Query 005216
Match_columns 708
No_of_seqs 246 out of 954
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 19:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1134 Uncharacterized conser 100.0 1E-116 3E-121 1007.3 58.3 682 3-690 4-707 (728)
2 COG5594 Uncharacterized integr 100.0 1E-115 3E-120 963.2 53.0 641 2-653 20-723 (827)
3 PF02714 DUF221: Domain of unk 100.0 2E-65 4.3E-70 549.7 33.6 318 298-615 1-325 (325)
4 PF13967 RSN1_TM: Late exocyto 100.0 7.4E-34 1.6E-38 271.5 13.7 156 5-168 1-157 (157)
5 PF04547 Anoctamin: Calcium-ac 98.9 4.7E-07 1E-11 101.9 28.6 206 398-615 163-397 (452)
6 PF14703 DUF4463: Domain of un 98.0 4E-06 8.6E-11 71.4 3.8 53 226-278 1-85 (85)
7 KOG2513 Protein required for m 97.9 0.0017 3.6E-08 72.4 22.8 256 341-616 261-557 (647)
8 TIGR01659 sex-lethal sex-letha 95.4 0.12 2.6E-06 55.9 11.3 103 186-352 104-214 (346)
9 PLN03134 glycine-rich RNA-bind 94.3 0.27 5.9E-06 46.2 9.2 77 188-328 33-111 (144)
10 PLN03120 nucleic acid binding 94.2 0.24 5.3E-06 50.6 9.0 73 189-329 4-78 (260)
11 TIGR01628 PABP-1234 polyadenyl 94.1 0.2 4.3E-06 58.3 9.4 154 191-354 2-201 (562)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 93.8 0.3 6.6E-06 52.9 9.7 101 189-353 3-111 (352)
13 TIGR01648 hnRNP-R-Q heterogene 93.5 0.44 9.5E-06 54.8 10.6 39 188-231 57-95 (578)
14 KOG0144 RNA-binding protein CU 93.5 0.46 9.9E-06 51.1 9.9 125 190-319 35-189 (510)
15 PF00076 RRM_1: RNA recognitio 92.8 0.37 7.9E-06 38.3 6.5 23 295-317 39-61 (70)
16 PF14259 RRM_6: RNA recognitio 92.7 0.37 8.1E-06 38.6 6.4 60 192-316 1-60 (70)
17 KOG0149 Predicted RNA-binding 92.3 0.31 6.8E-06 48.4 6.2 33 191-228 14-46 (247)
18 KOG0122 Translation initiation 91.0 0.82 1.8E-05 45.7 7.5 77 188-328 188-266 (270)
19 TIGR01661 ELAV_HUD_SF ELAV/HuD 90.9 0.66 1.4E-05 50.2 7.7 66 189-318 269-334 (352)
20 TIGR01628 PABP-1234 polyadenyl 90.4 0.85 1.8E-05 53.0 8.5 38 188-230 177-214 (562)
21 TIGR01659 sex-lethal sex-letha 90.3 1 2.2E-05 48.8 8.3 67 188-318 192-258 (346)
22 TIGR01648 hnRNP-R-Q heterogene 88.8 1.7 3.6E-05 50.2 8.9 36 296-331 270-307 (578)
23 KOG0145 RNA-binding protein EL 88.0 5.6 0.00012 40.2 10.8 132 191-331 43-209 (360)
24 KOG4211 Splicing factor hnRNP- 87.4 1.4 3E-05 48.4 6.7 37 187-229 8-44 (510)
25 KOG0125 Ataxin 2-binding prote 86.7 2.7 5.8E-05 43.9 8.0 88 189-342 96-195 (376)
26 KOG2514 Uncharacterized conser 86.7 4.7 0.0001 47.4 10.8 52 401-452 436-487 (861)
27 PF07810 TMC: TMC domain; Int 85.0 1.6 3.5E-05 38.9 4.8 53 529-586 48-105 (111)
28 TIGR01645 half-pint poly-U bin 84.3 5 0.00011 46.6 9.6 45 294-338 245-291 (612)
29 KOG4206 Spliceosomal protein s 82.8 1.3 2.8E-05 43.9 3.6 46 292-337 49-96 (221)
30 TIGR01622 SF-CC1 splicing fact 80.3 4.8 0.0001 45.3 7.7 36 188-228 88-123 (457)
31 PF13893 RRM_5: RNA recognitio 79.4 2.5 5.4E-05 32.3 3.5 24 295-318 21-44 (56)
32 TIGR01649 hnRNP-L_PTB hnRNP-L/ 78.5 4.5 9.7E-05 46.0 6.8 36 189-229 2-37 (481)
33 PLN03121 nucleic acid binding 76.8 3.6 7.8E-05 41.6 4.6 38 187-229 3-40 (243)
34 KOG0109 RNA-binding protein LA 76.7 2.3 5.1E-05 43.6 3.3 114 192-317 5-134 (346)
35 TIGR01642 U2AF_lg U2 snRNP aux 75.2 11 0.00023 43.2 8.7 76 189-328 295-372 (509)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 73.7 22 0.00048 40.4 10.7 36 188-228 274-310 (481)
37 KOG0127 Nucleolar protein fibr 73.6 9.1 0.0002 42.8 7.0 33 190-227 293-325 (678)
38 KOG0117 Heterogeneous nuclear 72.7 11 0.00023 41.2 7.1 134 189-328 83-245 (506)
39 KOG0107 Alternative splicing f 69.8 3.9 8.3E-05 39.1 2.7 34 294-327 46-81 (195)
40 smart00361 RRM_1 RNA recogniti 69.5 6.4 0.00014 31.7 3.7 25 294-318 36-60 (70)
41 PF04059 RRM_2: RNA recognitio 64.2 9.7 0.00021 33.1 4.0 23 295-317 45-67 (97)
42 KOG0117 Heterogeneous nuclear 60.9 13 0.00028 40.6 5.0 84 269-352 95-185 (506)
43 smart00362 RRM_2 RNA recogniti 60.7 11 0.00024 29.1 3.5 23 295-317 39-61 (72)
44 smart00360 RRM RNA recognition 55.2 16 0.00035 27.9 3.6 23 294-316 37-59 (71)
45 KOG0146 RNA-binding protein ET 54.2 24 0.00052 36.0 5.2 49 294-354 59-112 (371)
46 KOG0148 Apoptosis-promoting RN 53.5 14 0.0003 37.9 3.5 37 188-229 5-41 (321)
47 smart00362 RRM_2 RNA recogniti 53.4 17 0.00037 27.9 3.5 32 191-227 1-32 (72)
48 PF07292 NID: Nmi/IFP 35 domai 50.5 4 8.6E-05 34.8 -0.7 32 186-217 49-81 (88)
49 cd00590 RRM RRM (RNA recogniti 50.1 20 0.00044 27.6 3.5 24 295-318 40-63 (74)
50 cd00590 RRM RRM (RNA recogniti 43.7 37 0.00081 26.1 4.1 33 191-228 1-33 (74)
51 KOG0108 mRNA cleavage and poly 38.9 93 0.002 34.8 7.4 75 190-328 19-95 (435)
52 KOG4208 Nucleolar RNA-binding 36.4 32 0.00069 33.9 2.9 23 294-316 91-113 (214)
53 KOG1457 RNA binding protein (c 36.3 41 0.0009 33.5 3.7 23 295-317 77-99 (284)
54 PF14362 DUF4407: Domain of un 35.8 1.9E+02 0.0042 30.5 9.2 59 557-616 46-107 (301)
55 PF01102 Glycophorin_A: Glycop 35.0 32 0.00069 31.3 2.5 19 13-31 75-93 (122)
56 PF05620 DUF788: Protein of un 34.9 3E+02 0.0064 26.5 9.4 51 573-623 60-119 (170)
57 TIGR01622 SF-CC1 splicing fact 33.8 72 0.0016 35.8 5.8 39 187-230 184-222 (457)
58 PF14257 DUF4349: Domain of un 29.7 5.8E+02 0.013 26.2 11.4 26 263-288 160-185 (262)
59 PF11823 DUF3343: Protein of u 29.2 79 0.0017 25.6 3.8 36 296-334 2-37 (73)
60 KOG0123 Polyadenylate-binding 28.6 1.8E+02 0.0038 31.9 7.5 75 192-333 79-153 (369)
61 PF11608 Limkain-b1: Limkain b 26.8 1.1E+02 0.0023 26.0 4.1 40 295-334 39-80 (90)
62 PF06570 DUF1129: Protein of u 26.1 4.1E+02 0.009 26.3 9.1 20 627-646 183-202 (206)
63 PF02654 CobS: Cobalamin-5-pho 25.7 4.4E+02 0.0095 26.8 9.4 106 539-646 103-213 (235)
64 PF03699 UPF0182: Uncharacteri 25.6 1.3E+03 0.028 28.1 25.7 19 564-582 211-229 (774)
65 TIGR01642 U2AF_lg U2 snRNP aux 25.5 1E+02 0.0022 35.1 5.3 25 295-319 464-488 (509)
66 PF04059 RRM_2: RNA recognitio 24.6 80 0.0017 27.5 3.1 30 190-222 2-31 (97)
67 PF06790 UPF0259: Uncharacteri 24.4 6.8E+02 0.015 25.8 10.4 81 433-513 71-154 (248)
68 PF04835 Pox_A9: A9 protein co 24.2 1.4E+02 0.003 22.8 3.8 46 573-620 4-49 (54)
69 COG0724 RNA-binding proteins ( 22.9 91 0.002 31.2 3.9 35 189-228 115-149 (306)
70 KOG1548 Transcription elongati 22.7 1.6E+02 0.0034 31.5 5.4 45 274-318 286-337 (382)
71 PF02388 FemAB: FemAB family; 22.2 2.4E+02 0.0052 31.3 7.2 83 218-304 228-315 (406)
72 PF09874 DUF2101: Predicted me 21.7 2.8E+02 0.006 27.5 6.4 95 550-654 50-149 (206)
No 1
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=1.5e-116 Score=1007.29 Aligned_cols=682 Identities=41% Similarity=0.724 Sum_probs=625.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCceeecceeecCCCCCccccC-ccccccCc-ccchhhhhcCCHHHHHHHc
Q 005216 3 VSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSSNRRRRF-NLEMLIPS-AGWVSRAWKHSEEDLLESS 80 (708)
Q Consensus 3 ~~~~~~sl~~~~~~~~~~~~~F~~lR~~~~~~~vY~pr~~~~~~~~~~~~~-~~~~~~~~-~~Wi~~~~~~~~~~i~~~~ 80 (708)
.+++..+-.++...+..++.+|.+++.+++|.++|.|++...+.+..+... ..+.+++. ++|+.++++.+|+|++++|
T Consensus 4 ~~~~~~~s~~~~~~~~~~~~~~~~l~l~~~~~~vy~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wl~~~~k~~~~ei~~~~ 83 (728)
T KOG1134|consen 4 FESIGISSTLNLNSAFAFLFLFLFLRLQPRNFRVYLPIWSLKGLRSSPIESKVEPVPSSVNFGWLPALLKIPDEEILEHA 83 (728)
T ss_pred cccccccccccchhhHHHHHHHHHHHhhhcceEEEEeeeeeccccCcCccccCCCCCCcccccchHHHhcCCHHHHHHHh
Confidence 334455556666677777788888888899999999999987765432221 11225566 9999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCccccccCCCCCCCCCcccccccCCCCcchhHHHHHHHHHHHH
Q 005216 81 GLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIF 160 (708)
Q Consensus 81 GlDa~~flrflk~~~~if~~~~~~~~~iLlPin~~~~~~~~~~~~~~~~~~l~~~Ti~Nv~~~s~~lw~h~i~~~l~~~~ 160 (708)
|+||++||||+++++++|+++++++++|++|+|+++++.++.+ .++++++|++|++.+++++|+|++++|+++++
T Consensus 84 GlDa~~~L~~~~~~~~lf~~~~~l~~~illPVn~~~~~~~~~~-----~~s~~~ls~snv~~~s~~lw~Hv~~~y~~~~~ 158 (728)
T KOG1134|consen 84 GLDAYVFLRFLKLGIKLFAVLSLLSVPILLPVNWTNGNLELGN-----EDSLDKLSISNVQPGSSLLWAHVFFTYLFTFF 158 (728)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhheEEeeEEEecCcccccc-----cchhhhhhheeccCCCCCEEEEeehhHHHHHH
Confidence 9999999999999999999999999999999999999886531 12799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHH
Q 005216 161 VCYLLYSEYKYICVKRMDYFYSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYA 240 (708)
Q Consensus 161 ~~~~l~~e~~~~~~~R~~~l~~~~~~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~ 240 (708)
++|++++||+++..+|+++++++.+.+++.|++++++|+..+.+..+..+++|...+|+++.++++++|..++.++.+++
T Consensus 159 ~~~~l~~e~~~~~~~R~~~l~~~~~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 238 (728)
T KOG1134|consen 159 TLFILYREYKHVASIRQAYLASPKYRPDQSSVLVRNVPPPDGVSVSVIVRHFFSLNHPVKVRSHQVVYNESKLSKLLSKL 238 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCcCccccchhhhcccCCCCCchhhHHhhhhhccCCceeehhHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999765556678888999999999999999999999999999999
Q ss_pred HHH-HHHHHhhccC----CCCCC--C------CCCccchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHH
Q 005216 241 KKL-YGRLIHLQSD----SNQEK--N------QQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYG 307 (708)
Q Consensus 241 ~~~-~~~le~~~~k----~~~rP--k------~g~kvd~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~ 307 (708)
+|+ ++++.+.+.+ ..+|| | +|+||||||||++|+++++++|+++|+...++ +..+.|||||+|+.+
T Consensus 239 ~k~~~~~l~~~~~~~~~~~~~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i~~~~~~~~~~-~~~~~aFVtf~sr~~ 317 (728)
T KOG1134|consen 239 KKLRENKLYKEHKRLKSNPKKRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDIEELRESLYEE-KPLPAAFVTFKSRYG 317 (728)
T ss_pred HHHhHHHHHHhhhhhccccccCCcceeeeeeeecceecHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEEEEeeHH
Confidence 998 4444332211 12688 3 68999999999999999999999999998776 458999999999999
Q ss_pred HHHHHHhcccCCCCCceeecCCCCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhHhhhh
Q 005216 308 AAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFL 387 (708)
Q Consensus 308 a~~a~q~~~~~~p~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~i~~~iPva~i~~l~~l~~l~~~~p~l 387 (708)
|+.|+|..++.++.+|.++.||||+||.|+|+..+..+|+.|+++++++++++++||++|+|+|++++|+++|++.+||+
T Consensus 318 A~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~l~nl~~l~~~~Pfl 397 (728)
T KOG1134|consen 318 AAVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQALTNLEGLSKVFPFL 397 (728)
T ss_pred HHHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHhhhhHHHHHHHHHHhhcccchHHHHHHH
Q 005216 388 KSILTIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNI 467 (708)
Q Consensus 388 ~~~~~~~~~~~~i~~~lP~lil~i~n~llp~ii~~ls~~eg~~t~S~~~~s~~~k~f~f~~~n~flv~~i~~s~~~~l~~ 467 (708)
+.+.+.+.++++++|+||++++.++++++|.++++++++|||.|+|+.|++.+.|+|+|+++|+|++++++|+++.++..
T Consensus 398 k~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~sa~~~~~~ 477 (728)
T KOG1134|consen 398 KPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGSALRQLLS 477 (728)
T ss_pred hhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHH
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hh-CCCChHHHHhhhcCchhHHHHHHHHHHhhhhhhHHhHhhHHHHHHHHhccCCCCCCCC----CCC-CCcCCccchhh
Q 005216 468 VL-DPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDD----FEV-PAIHYHSELPR 541 (708)
Q Consensus 468 ~~-~p~~i~~~L~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~~li~~~~~~~~~~~T~r~----~~~-~~f~~~~~y~~ 541 (708)
+. +|.+++..+|.++|++++||++|++++|+.|.+++++|+++|+++.+++.+..+|+|+ +++ +.+++|..||+
T Consensus 478 ~l~~p~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~~~p~~~~~~g~~yP~ 557 (728)
T KOG1134|consen 478 ILSTPRLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPRDREERYEPLSSFYFGTIYPR 557 (728)
T ss_pred HhcCHhHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchhhhhhhcCCccccchhhhccH
Confidence 87 6899999999999999999999999999999999999999999999998888889986 555 88999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005216 542 ILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLS 621 (708)
Q Consensus 542 ~l~~~~i~l~Ys~i~Plil~~~~~yF~~~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~i~q~~~~g~~~l~~~~ 621 (708)
.+++++|+++||+++|+|+|||++||++.|+|||||++|||.++|||||++||.+++++++|+++||++|+|+|++++++
T Consensus 558 ~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~~wp~ih~~ii~~l~l~ql~l~gl~~~k~~~ 637 (728)
T KOG1134|consen 558 ILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGRFWPDIHRRIIFGLILFQLILFGLFSLKKGA 637 (728)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecccccccccchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceehhhHHHHHHHHHHHHhcccCccccccChhhhhhhCcccccchh-hHhhhhhhhcccCCCCccccc
Q 005216 622 TASTLIFPLPVLTLLFNEYCRKRFLPNFIAYPAEVLIKKDREDQDDAT-IAEFFDSLAITYRHPAFLAVH 690 (708)
Q Consensus 622 ~~~~~~~~l~~~t~~f~~~~~~~~~~~~~~~pl~~~~~~d~~~~~~~~-~~~~~~~~~~~Y~~P~l~~~~ 690 (708)
..+.+++|++++|+.+|.+|..+|.|.+.++|++++...|..|+..++ ++...+.+.++|.||++.+++
T Consensus 638 ~~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 707 (728)
T KOG1134|consen 638 VASVLLFPLIVLTILFHIYCKGRFLPLFIAYPIEEAEVDDTLDEEREPNMENLYNYLKSAYVLPVFLSGS 707 (728)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhccccccccchhhhhhccCCccccCCChhhccccccccccCccccccc
Confidence 999999999999999999999999999999999999999998876555 445678889999999999876
No 2
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=1.4e-115 Score=963.20 Aligned_cols=641 Identities=28% Similarity=0.462 Sum_probs=585.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCceeecceeecCCCCCccccCccccccCcccchhhhhcCCHHHHHHHcC
Q 005216 2 LVSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSSNRRRRFNLEMLIPSAGWVSRAWKHSEEDLLESSG 81 (708)
Q Consensus 2 ~~~~~~~sl~~~~~~~~~~~~~F~~lR~~~~~~~vY~pr~~~~~~~~~~~~~~~~~~~~~~~Wi~~~~~~~~~~i~~~~G 81 (708)
+.+++.|++.+++.++++++++|++||+| ++++|+||+..++.++..+ .+.++|.|||+.++++++|+.+++++|
T Consensus 20 s~~~~~t~l~f~~~~~~~~l~~f~iLR~r--~k~lY~pr~~~~~~~~~~P---~~~~ss~~gWl~~L~~i~d~~~l~~aG 94 (827)
T COG5594 20 STSAVITQLVFAGLIFLVFLILFLILRKR--WKRLYAPRTNFDGQNECLP---EPNPSSYWGWLEPLVKIPDEFLLQYAG 94 (827)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHhcCcceeecCCCcccC---CCCccchHHHHHHHHhCCHHHHHHHcC
Confidence 46889999999999999999999999976 7999999999887652221 124789999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCccccccCCCCCCCCCcccccccCCCCcchhHHHHHHHHHHHHH
Q 005216 82 LDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFV 161 (708)
Q Consensus 82 lDa~~flrflk~~~~if~~~~~~~~~iLlPin~~~~~~~~~~~~~~~~~~l~~~Ti~Nv~~~s~~lw~h~i~~~l~~~~~ 161 (708)
+|||+||||+|||++++++.|+++++||+|||++.++..+. +..+.++++++|++|+++ ++++|+|++.+|++.+++
T Consensus 95 lD~y~fLrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~g--n~~s~s~l~~Ls~~Nv~~-~n~~~aHvf~~~~f~~~v 171 (827)
T COG5594 95 LDGYFFLRFLKMLIKLLFILSLILIPILLPVNYHFQKATNG--NSDSESGLDKLSISNVSP-SNRLYAHVFLSWFFFGYV 171 (827)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHEeeeeeecccccccC--CccchhhhhHhhhhcccC-CCceeeeeehhHHHHHHH
Confidence 99999999999999999999999999999999877554322 123568999999999996 789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC---------CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccch
Q 005216 162 CYLLYSEYKYICVKRMDYFYSSKP---------QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSN 232 (708)
Q Consensus 162 ~~~l~~e~~~~~~~R~~~l~~~~~---------~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~ 232 (708)
+|.+++|++.++.+||++++++.+ +.++|||+++++|.+..+ .+.+.++|+++.-+++.+..+|||.+.
T Consensus 172 lfii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~--~e~L~~~~~kl~~~~i~~~~l~~~~~~ 249 (827)
T COG5594 172 LFIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRS--DEELKELFDKLKVGEIDSDVLCRDLGT 249 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcC--chhHHHHHhhcCeeeeccchhhhhhHH
Confidence 999999999999999999999853 348999999999995443 245889999998888888999999999
Q ss_pred HHHHHHHHHHHHHHHHhh---------cc------C---------------------CCCCC--C--------CCCccch
Q 005216 233 LCRLMDYAKKLYGRLIHL---------QS------D---------------------SNQEK--N--------QQRKVDL 266 (708)
Q Consensus 233 L~~L~~~~~~~~~~le~~---------~~------k---------------------~~~rP--k--------~g~kvd~ 266 (708)
++++.++|++..+++|.. +. | ..+|| | .|||||+
T Consensus 250 l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkVda 329 (827)
T COG5594 250 LQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKVDA 329 (827)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhccceecH
Confidence 999999999988887721 00 0 02377 1 5899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCCCCce-eecCCCCCCcccCccccchHH
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWL-LEQAPEPNDVYWPFFSASFMR 345 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~p~~~~-v~~AP~P~DIiW~NL~~~~~~ 345 (708)
|||+++++.+++++|++.|+...... .+++|||||+|+..||+|+|....+++.... ++.||+|+||+|+|+..++++
T Consensus 330 I~y~s~~l~~l~~~i~~~r~~~~~~t-~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~Nl~ls~~~ 408 (827)
T COG5594 330 IDYYSAKLTKLDAEIENARKSLYENT-PTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRKE 408 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccC-ccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccccchHHHHH
Confidence 99999999999999999999876543 3779999999999999999999888887665 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhHhhhhhhhh-hhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005216 346 RWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSIL-TIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLS 424 (708)
Q Consensus 346 r~~R~~~~~~~~~~l~i~~~iPva~i~~l~~l~~l~~~~p~l~~~~-~~~~~~~~i~~~lP~lil~i~n~llp~ii~~ls 424 (708)
|..|++.++++.++++++|++|||+++.++|++++.+.+||++.+. +.|+++++++|+||++++.+++.++|+++++++
T Consensus 409 r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~l~~ivP~fir~Ls 488 (827)
T COG5594 409 RLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWLS 488 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999994 566999999999999999999999999999999
Q ss_pred HhccCcchhHHHHHHhhhhHHHHHHHHHHhhcccchHHHHHHHhh-CCCChHHHHhhhcCchhHHHHHHHHHHhhhhhhH
Q 005216 425 SIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVL-DPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISS 503 (708)
Q Consensus 425 ~~eg~~t~S~~~~s~~~k~f~f~~~n~flv~~i~~s~~~~l~~~~-~p~~i~~~L~~~lp~~s~ffi~yii~~~~~~~~~ 503 (708)
++||..|+|+.|+.++.|||.|+|+|.|+|.++++++.+.+.+.. +|.+++..||+++|++|+||++|+++||+++.++
T Consensus 489 ~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~~s~~~llA~~lpk~SnFfi~~iilqgl~~~~~ 568 (827)
T COG5594 489 YMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEPTSIMTLLANNLPKASNFFISYIILQGLSGFPG 568 (827)
T ss_pred HhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcChHhHHHHHHhccHHHHHHHHHHHHHhcccccch
Confidence 999999999999999999999999999999999998877777766 8999999999999999999999999999999999
Q ss_pred HhHhhHHHHHHHHhccCCCCCCCC-----CCCCCcCCccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 005216 504 ELFQIFPLICSLISKPFTKSKDDD-----FEVPAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQF 578 (708)
Q Consensus 504 ~Ll~~~~li~~~~~~~~~~~T~r~-----~~~~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yF~~~y~v~Ky~l 578 (708)
+|+|+++|+.+.++.++.++|||+ ..++.|+||..||+.+++++|+++||+++|+|+.||++||++.|++|||++
T Consensus 569 ~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylaykY~l 648 (827)
T COG5594 569 TLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYNL 648 (827)
T ss_pred HHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988888999996 578999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceehhhHHHHHHHHHHHHhcccCccccccC
Q 005216 579 INVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYP 653 (708)
Q Consensus 579 lyvy~~~~esgG~~~~~~~~~~~~~l~i~q~~~~g~~~l~~~~~~~~~~~~l~~~t~~f~~~~~~~~~~~~~~~p 653 (708)
+|+++.++||||++||+|++|+++|+++||+||+|+|++.++|+.+.+++|++.+|+++|.+|+..|.|+.++.-
T Consensus 649 ~Yv~~~~~es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~~ls~~~~p~~~~Tvi~~~~~~~~f~pl~~~ik 723 (827)
T COG5594 649 IYVSNHSPESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKMFDPLSKYIK 723 (827)
T ss_pred hhccCCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcceeEeehHHHHHHHHHHHHHHHHhhccccccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999997754443
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=2e-65 Score=549.69 Aligned_cols=318 Identities=34% Similarity=0.706 Sum_probs=307.2
Q ss_pred EEEEecCHHHHHHHHHhcccCCCCCceeecCCCCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 005216 298 AFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNL 377 (708)
Q Consensus 298 AFVtF~s~~~a~~a~q~~~~~~p~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~i~~~iPva~i~~l~~l 377 (708)
|||||+++++|+.|+|...+++|++|++++||||+||+|+||+.+..+|..|++++++++++++++|++|++++++++|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l 80 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL 80 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhHhhhhhhhh-hhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHhhhhHHHHHHHHHHhhc
Q 005216 378 NQLEIWFPFLKSIL-TIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATV 456 (708)
Q Consensus 378 ~~l~~~~p~l~~~~-~~~~~~~~i~~~lP~lil~i~n~llp~ii~~ls~~eg~~t~S~~~~s~~~k~f~f~~~n~flv~~ 456 (708)
+++++..|++++.. .++...++++|++|+++++++|.++|.+++.++++|||.|+|+.|+++++|+|+||++|++++++
T Consensus 81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~ 160 (325)
T PF02714_consen 81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS 160 (325)
T ss_pred cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999984 45677899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhh-CCCChHHHHhhhcCchhHHHHHHHHHHhhhhhhHHhHhhHHHHHHHHhccCCCCCCCC----C-CC
Q 005216 457 FSGSVLYQLNIVL-DPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDD----F-EV 530 (708)
Q Consensus 457 i~~s~~~~l~~~~-~p~~i~~~L~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~~li~~~~~~~~~~~T~r~----~-~~ 530 (708)
+++++++.+.++. +|+++.+.+|+++|++++||++|++++++.+.+++|+|+++++++.+++++..+|||| . ++
T Consensus 161 l~~~~~~~~~~~~~~~~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~~ 240 (325)
T PF02714_consen 161 LAGTILSALKNIINNPGSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTEP 240 (325)
T ss_pred hhHHHHHHHHHHHhCcchHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence 9999999988877 7999999999999999999999999999999999999999999999988776799997 4 89
Q ss_pred CCcCCccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCCCCccccHHHHHHHHHHHHHHHHHH
Q 005216 531 PAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAI 610 (708)
Q Consensus 531 ~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yF~~~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~i~q~~ 610 (708)
++|+||..||+.+++++|+++||+++|+++|+|++||++.|++||||++|||++++||||++||.+++++++|++++|++
T Consensus 241 ~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~es~G~~~~~~~~~~~~~l~i~q~~ 320 (325)
T PF02714_consen 241 PPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYESGGRLWPTAFNRLLFGLVIFQFT 320 (325)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 005216 611 AVGIF 615 (708)
Q Consensus 611 ~~g~~ 615 (708)
|+|+|
T Consensus 321 ~~g~f 325 (325)
T PF02714_consen 321 MIGLF 325 (325)
T ss_pred HHHhC
Confidence 99986
No 4
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport
Probab=100.00 E-value=7.4e-34 Score=271.52 Aligned_cols=156 Identities=36% Similarity=0.599 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCceeecceeecCC-CCCccccCccccccCcccchhhhhcCCHHHHHHHcCCc
Q 005216 5 ALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKG-SSNRRRRFNLEMLIPSAGWVSRAWKHSEEDLLESSGLD 83 (708)
Q Consensus 5 ~~~~sl~~~~~~~~~~~~~F~~lR~~~~~~~vY~pr~~~~~-~~~~~~~~~~~~~~~~~~Wi~~~~~~~~~~i~~~~GlD 83 (708)
++++++++|++++++++++|+++|+| ++++|+||.+.++ .++++ +.++++|+|+|++++++++|+|++++||+|
T Consensus 1 s~~~sl~~~~~i~~~~~~~F~~lR~~--~~~iY~pR~~~~~~~~~~~---~~~~~~g~f~Wi~~~~~~~d~~i~~~~GlD 75 (157)
T PF13967_consen 1 SFLTSLAINLIIFLVLLLLFCILRKR--FPRIYQPRSYLPHPEPERP---PPLPSRGFFGWIKPVFKISDDEILRHCGLD 75 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--cHHhcccccccCCcccccC---CCCCCCCchHHHHHHHcCCHHHHHHHcCCC
Confidence 58999999999999999999999976 8999999999863 22222 122357999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCccccccCCCCCCCCCcccccccCCCCcchhHHHHHHHHHHHHHHH
Q 005216 84 AVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCY 163 (708)
Q Consensus 84 a~~flrflk~~~~if~~~~~~~~~iLlPin~~~~~~~~~~~~~~~~~~l~~~Ti~Nv~~~s~~lw~h~i~~~l~~~~~~~ 163 (708)
|++|+||+|+++++|+++++++++||+|+|++|++.++. ....++++++|++|++++++++|+|++++|+++++++|
T Consensus 76 a~~flrflr~~~~~f~~~~i~~~~vLlPi~~~~~~~~~~---~~~~~~l~~~tisnv~~~s~~lw~h~v~~~i~~~~~~~ 152 (157)
T PF13967_consen 76 AYVFLRFLRMLIKIFLFLSILSLPVLLPINYTGGDDDGD---SDNESGLDRLTISNVPKGSSRLWAHVVFAYIFTFYVLY 152 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeeeEEeCCCCccc---cccccccccccHHhhcCCCCeehHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999876532 11227999999999998999999999999999999999
Q ss_pred HHHHH
Q 005216 164 LLYSE 168 (708)
Q Consensus 164 ~l~~e 168 (708)
++++|
T Consensus 153 ~l~~E 157 (157)
T PF13967_consen 153 LLWRE 157 (157)
T ss_pred hheeC
Confidence 99876
No 5
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=98.94 E-value=4.7e-07 Score=101.87 Aligned_cols=206 Identities=14% Similarity=0.207 Sum_probs=136.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHhhhhHHHHHHHHHHhhcccchHHHHHHHhh-CCCChHH
Q 005216 398 QVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVL-DPKNIPS 476 (708)
Q Consensus 398 ~~i~~~lP~lil~i~n~llp~ii~~ls~~eg~~t~S~~~~s~~~k~f~f~~~n~flv~~i~~s~~~~l~~~~-~p~~i~~ 476 (708)
+++.+++-++++.++|.+...+...+.++|.|.|.++.|.+...|.|.|+++|.+.-.... +.+......- ++ +..+
T Consensus 163 ~~~~~vl~~v~i~il~~iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-aF~~~~~~~~~~~-~~~~ 240 (452)
T PF04547_consen 163 SLIPTVLNAVVILILNFIYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-AFFYGVRQEECQP-CLSR 240 (452)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccccCC-CHHH
Confidence 4444444455556677777788899999999999999999999999999999998644332 2222211100 22 2211
Q ss_pred HHhhhcCchhHHHHHHHHHHhhhhhhHHhHhhHHHHHHHHhcc-C---CCCCC----C--------------CCCCCCcC
Q 005216 477 RLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKP-F---TKSKD----D--------------DFEVPAIH 534 (708)
Q Consensus 477 ~L~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~~li~~~~~~~-~---~~~T~----r--------------~~~~~~f~ 534 (708)
| +.-+..+++++-+.+...|.. .|.+.+..+++ . ..++. + |.+.++++
T Consensus 241 -L-------~~ql~~~~~~~qi~~~~~e~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~ 310 (452)
T PF04547_consen 241 -L-------RIQLFTIMVTKQIINNLLEVV--LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYD 310 (452)
T ss_pred -H-------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCC
Confidence 1 223344444444444445544 34555444332 1 11111 0 14556666
Q ss_pred Cc---cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCC---CCccccHHHHHHHHHHHHHHHH
Q 005216 535 YH---SELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKY---ETAGKFWPIVHNSMIFSLVLMH 608 (708)
Q Consensus 535 ~~---~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yF~~~y~v~Ky~llyvy~~~~---esgG~~~~~~~~~~~~~l~i~q 608 (708)
-. .+|..+..-+-.+..|+++.|+...+|++.-.+-.-+|++.+++.++||. .++=..|-.++..+...-++..
T Consensus 311 ~~g~~~dY~emviQFGyv~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~tN 390 (452)
T PF04547_consen 311 PDGLFDDYLEMVIQFGYVTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVITN 390 (452)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHHH
Confidence 43 78999999999999999999999999999999999999999999997653 2222359999888777666666
Q ss_pred HHHHHHH
Q 005216 609 AIAVGIF 615 (708)
Q Consensus 609 ~~~~g~~ 615 (708)
..++++.
T Consensus 391 ~~li~~~ 397 (452)
T PF04547_consen 391 AALIAFT 397 (452)
T ss_pred HHHHHhh
Confidence 6666655
No 6
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=98.04 E-value=4e-06 Score=71.42 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=41.3
Q ss_pred EEcccchHHHHHHHHHHHHHHHHhhccC-----C----------C--------CCC----C----CC-CccchHHHHHHH
Q 005216 226 VIHQTSNLCRLMDYAKKLYGRLIHLQSD-----S----------N--------QEK----N----QQ-RKVDLVDHYGKR 273 (708)
Q Consensus 226 i~~~~~~L~~L~~~~~~~~~~le~~~~k-----~----------~--------~rP----k----~g-~kvd~i~~~~~~ 273 (708)
+|||+++|++|+++|+++.++||+...+ . . .|| + || +||||||||++|
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kVDaIdyy~~e 80 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSNKKRPRHRTGFLGLFGGKKVDAIDYYREE 80 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCccccccccCCCCCCCcCCCCCCCcchHHHHHHHH
Confidence 5899999999999999999999952210 0 0 122 1 56 999999999999
Q ss_pred HHHHH
Q 005216 274 LENIE 278 (708)
Q Consensus 274 i~~l~ 278 (708)
+++|+
T Consensus 81 l~~Ln 85 (85)
T PF14703_consen 81 LKELN 85 (85)
T ss_pred HHHhC
Confidence 99875
No 7
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.0017 Score=72.40 Aligned_cols=256 Identities=16% Similarity=0.246 Sum_probs=144.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhHhhhhhhhhhhhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005216 341 ASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVPPVM 420 (708)
Q Consensus 341 ~~~~~r~~R~~~~~~~~~~l~i~~~iPva~i~~l~~l~~l~~~~p~l~~~~~~~~~~~~i~~~lP~lil~i~n~llp~ii 420 (708)
.+.+.|.+|+.++.+-++++++....++.+...-... |.......| +.+ +-.++|++++.++..++..+-
T Consensus 261 yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~ie~--------~~~s~~~~~-~~s-ils~lP~iv~~~li~~~t~~Y 330 (647)
T KOG2513|consen 261 YPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQIEV--------WVLSDYGGP-LIS-ILSYLPTIVYAVLIPVLTRIY 330 (647)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHcCCc-hHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999998888887777766666655543221 112222233 222 345788888877776666555
Q ss_pred ----HHHHHhccCcchhHHHHHHhhhhHHHHHHHHHHhhcccchHHHHHHHhhCCCChHHHHhhhcCchhHHH------H
Q 005216 421 ----EFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIPSRLGVAVPAQASFF------I 490 (708)
Q Consensus 421 ----~~ls~~eg~~t~S~~~~s~~~k~f~f~~~n~flv~~i~~s~~~~l~~~~~p~~i~~~L~~~lp~~s~ff------i 490 (708)
.+|.++|.|.|+|..+++...|.+.|+|+|.++--...+-....+. ..-..|+..+-.+-.++ +
T Consensus 331 ~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l~d~~------~Lk~~l~~~li~sQ~l~~~~e~~~ 404 (647)
T KOG2513|consen 331 KKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLLRDME------LLKQQLATLLITSQSLLNLMEIAL 404 (647)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556889999999999999999999999999864333221111111 11111111111100000 0
Q ss_pred HHHHHHhhhhhhHHhHhhH--HHHHHHHh---------ccCCCCCCCC-------------CCCCCcCCcc---chhhHH
Q 005216 491 AYVVTSGWTGISSELFQIF--PLICSLIS---------KPFTKSKDDD-------------FEVPAIHYHS---ELPRIL 543 (708)
Q Consensus 491 ~yii~~~~~~~~~~Ll~~~--~li~~~~~---------~~~~~~T~r~-------------~~~~~f~~~~---~y~~~l 543 (708)
.|...+.--+ -+..|.. ........ +-+.++| |+ .+..--.|.. .|=.+.
T Consensus 405 p~f~~~~~r~--~~~~~f~t~~~ae~~~s~~~~i~~~~~~~~~~s-~~~~a~~~~~~~qa~~E~~~~~ydgtf~Dylel~ 481 (647)
T KOG2513|consen 405 PYFKIRTKRY--ENYIRFRTKSFAEELASAQAKIDGESPGFPAPS-REPEAQLFPSLKQAELESGLAEYDGTFDDYLELL 481 (647)
T ss_pred hHHHHhhhhh--hhhhhHHHHHHHHhhccchhhhcccccCCCCcc-cccchhhcccchhhhhcchhhhhcchhHHHHHHH
Confidence 0111110000 0001110 00001000 0000011 11 1122222332 244667
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCC----CCccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 005216 544 LFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKY----ETAGKFWPIVHNSMIFSLVLMHAIAVGIFT 616 (708)
Q Consensus 544 ~~~~i~l~Ys~i~Plil~~~~~yF~~~y~v~Ky~llyvy~~~~----esgG~~~~~~~~~~~~~l~i~q~~~~g~~~ 616 (708)
+-|-..++||++.|+-..+|++-=.+.+=+|-+.++.+.++|. ++-|. |..++..+-+.-++....++|+..
T Consensus 482 lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG~-Wq~~l~~lSvls~vtncaLi~~~~ 557 (647)
T KOG2513|consen 482 LQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIGA-WQNALELLSVLSCVTNCALIGMYP 557 (647)
T ss_pred HHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhHH-HHHHHHHHHHHHHHHhHHHHhccc
Confidence 7778889999999999999999999999999999999998763 66676 988887766555555555555443
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=95.42 E-value=0.12 Score=55.86 Aligned_cols=103 Identities=13% Similarity=0.193 Sum_probs=69.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
..+..+|.|.|||.+.++ +.|+++|++. +.|.+|.+++|..
T Consensus 104 ~~~~~~LfVgnLp~~~te---~~L~~lF~~~--G~V~~v~i~~d~~---------------------------------- 144 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTD---RELYALFRTI--GPINTCRIMRDYK---------------------------------- 144 (346)
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecCC----------------------------------
Confidence 456789999999998764 7899999987 4477777664210
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC-C-----CCCCcccC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA-P-----EPNDVYWP 337 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A-P-----~P~DIiW~ 337 (708)
. .+..++|||+|.++++|..|.+.+.... ...++|+.| | ....|+-.
T Consensus 145 ------------------------t-g~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~ 199 (346)
T TIGR01659 145 ------------------------T-GYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVT 199 (346)
T ss_pred ------------------------C-CccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEe
Confidence 0 0125899999999999999998766432 234555544 2 22336666
Q ss_pred ccccchHHHHHHHHH
Q 005216 338 FFSASFMRRWISKIV 352 (708)
Q Consensus 338 NL~~~~~~r~~R~~~ 352 (708)
||..+..+.-+|.++
T Consensus 200 nLp~~vtee~L~~~F 214 (346)
T TIGR01659 200 NLPRTITDDQLDTIF 214 (346)
T ss_pred CCCCcccHHHHHHHH
Confidence 776665555555544
No 9
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=94.32 E-value=0.27 Score=46.17 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=54.8
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
...+|.|.|||.+.++ +.|+++|+++ +.|.++.++.|-
T Consensus 33 ~~~~lfVgnL~~~~te---~~L~~~F~~~--G~I~~v~i~~d~------------------------------------- 70 (144)
T PLN03134 33 MSTKLFIGGLSWGTDD---ASLRDAFAHF--GDVVDAKVIVDR------------------------------------- 70 (144)
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEEecC-------------------------------------
Confidence 3568999999998764 7899999886 567777665431
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..+.|||+|.+.++|+.|.+.+.... ...++|+.|
T Consensus 71 ----------------------~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 71 ----------------------ETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred ----------------------CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 001235899999999999999998765432 234555544
No 10
>PLN03120 nucleic acid binding protein; Provisional
Probab=94.18 E-value=0.24 Score=50.61 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=52.9
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
.+||.|.|||.+.++ +.|++||+.. |.|.++.+.+|-
T Consensus 4 ~rtVfVgNLs~~tTE---~dLrefFS~~--G~I~~V~I~~d~-------------------------------------- 40 (260)
T PLN03120 4 VRTVKVSNVSLKATE---RDIKEFFSFS--GDIEYVEMQSEN-------------------------------------- 40 (260)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeecC--------------------------------------
Confidence 479999999998764 7899999887 677777664310
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
. ..+.|||||+++.+|..|.. +... ....++|++|+
T Consensus 41 -----------------------~-~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 41 -----------------------E-RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred -----------------------C-CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 0 14799999999999999985 4332 23455566554
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=94.07 E-value=0.2 Score=58.25 Aligned_cols=154 Identities=13% Similarity=0.117 Sum_probs=82.5
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHH------HHHHHHHHHHHHhhccC-----C-----
Q 005216 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRL------MDYAKKLYGRLIHLQSD-----S----- 254 (708)
Q Consensus 191 TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L------~~~~~~~~~~le~~~~k-----~----- 254 (708)
||.|.|||.+.++ +.|+++|+++ |.|.+|.+++|...=..+ ....+.+++.++.+..+ .
T Consensus 2 sl~VgnLp~~vte---~~L~~~F~~~--G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~ 76 (562)
T TIGR01628 2 SLYVGDLDPDVTE---AKLYDLFKPF--GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMW 76 (562)
T ss_pred eEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeec
Confidence 7999999998764 7899999988 568899999875411000 11222333333322111 0
Q ss_pred -CCCC---C----------CCCccchHHHHHHHHHHHHHH---HHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 005216 255 -NQEK---N----------QQRKVDLVDHYGKRLENIEEN---SRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (708)
Q Consensus 255 -~~rP---k----------~g~kvd~i~~~~~~i~~l~~~---I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~ 317 (708)
.+.| + ..+.+|. +++.++-++ |...+-......+..|+|||.|.+.++|..|.+.+..
T Consensus 77 s~~~~~~~~~~~~~vfV~nLp~~~~~-----~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 77 SQRDPSLRRSGVGNIFVKNLDKSVDN-----KALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred ccccccccccCCCceEEcCCCccCCH-----HHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 1112 0 1112221 222222221 1111111111223468999999999999999987653
Q ss_pred CC--CCCceee-----------cCCCCCCcccCccccchHHHHHHHHHHH
Q 005216 318 TN--PTDWLLE-----------QAPEPNDVYWPFFSASFMRRWISKIVVV 354 (708)
Q Consensus 318 ~~--p~~~~v~-----------~AP~P~DIiW~NL~~~~~~r~~R~~~~~ 354 (708)
.. ...+.+. ..+..+.|+-.||..+..+..++.++..
T Consensus 152 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~ 201 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAK 201 (562)
T ss_pred cEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHh
Confidence 21 1112211 2233455888888887777777766543
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=93.80 E-value=0.3 Score=52.90 Aligned_cols=101 Identities=13% Similarity=0.205 Sum_probs=70.4
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
..+|+|.|||.+..+ +.|+++|+++ |.|.++.+++|- .+
T Consensus 3 ~~~l~V~nLp~~~~e---~~l~~~F~~~--G~i~~v~i~~d~---------------------------------~~--- 41 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQ---EEIRSLFTSI--GEIESCKLVRDK---------------------------------VT--- 41 (352)
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHcc--CCEEEEEEEEcC---------------------------------CC---
Confidence 468999999998764 7899999997 567788777541 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC------CCCCcccCccc
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP------EPNDVYWPFFS 340 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP------~P~DIiW~NL~ 340 (708)
.+..|+|||+|.+.++|..|...+.... ...+.++.|- ....|.-.||.
T Consensus 42 -----------------------g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~ 98 (352)
T TIGR01661 42 -----------------------GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLP 98 (352)
T ss_pred -----------------------CccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCcc
Confidence 1136899999999999999998776542 2344555442 23357777777
Q ss_pred cchHHHHHHHHHH
Q 005216 341 ASFMRRWISKIVV 353 (708)
Q Consensus 341 ~~~~~r~~R~~~~ 353 (708)
.+..+..++.++.
T Consensus 99 ~~~~~~~l~~~f~ 111 (352)
T TIGR01661 99 KTMTQHELESIFS 111 (352)
T ss_pred ccCCHHHHHHHHh
Confidence 7766666665543
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=93.53 E-value=0.44 Score=54.83 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=31.7
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccc
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTS 231 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~ 231 (708)
...+|.|.|||.+.++ +.|++.|++. +.|.++.+.+|..
T Consensus 57 ~~~~lFVgnLp~~~tE---d~L~~~F~~~--G~I~~vrl~~D~s 95 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYE---DELVPLFEKA--GPIYELRLMMDFS 95 (578)
T ss_pred CCCEEEeCCCCCCCCH---HHHHHHHHhh--CCEEEEEEEECCC
Confidence 4579999999998765 7899999987 5688888888743
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=93.53 E-value=0.46 Score=51.09 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=65.2
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHH---------HHHHHHHHHHHHHHhhccCCC-C---
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLC---------RLMDYAKKLYGRLIHLQSDSN-Q--- 256 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~---------~L~~~~~~~~~~le~~~~k~~-~--- 256 (708)
--..|-.||+.-.| ++++++|+++ |.|.+|.+.+|-..=+ .-.++.+++++.|...+.-.+ .
T Consensus 35 vKlfVgqIprt~sE---~dlr~lFe~y--g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 35 VKLFVGQIPRTASE---KDLRELFEKY--GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred hhheeccCCccccH---HHHHHHHHHh--CceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34678899986543 6788999988 6788888887743111 112333344443322111000 0
Q ss_pred --CCCCCCccc---hH---------HHHHHHHHHHHHHH---HHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC
Q 005216 257 --EKNQQRKVD---LV---------DHYGKRLENIEENS---RLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN 319 (708)
Q Consensus 257 --rPk~g~kvd---~i---------~~~~~~i~~l~~~I---~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~ 319 (708)
||--+++.. .- ..-+++++++-.+. ++.+--.+....+.|+|||+|.+.+.|..|...++...
T Consensus 110 qvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 110 QVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred eecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 110011100 00 01123444444332 22221111223458999999999999999998877543
No 15
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=92.85 E-value=0.37 Score=38.32 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.3
Q ss_pred CcEEEEEecCHHHHHHHHHhccc
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQS 317 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~ 317 (708)
.+.|||+|++.++|..|.+.++.
T Consensus 39 ~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 39 KGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTT
T ss_pred cceEEEEEcCHHHHHHHHHHcCC
Confidence 68999999999999999987654
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=92.74 E-value=0.37 Score=38.65 Aligned_cols=60 Identities=25% Similarity=0.385 Sum_probs=43.4
Q ss_pred EEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHHHH
Q 005216 192 VLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYG 271 (708)
Q Consensus 192 Vlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~~~ 271 (708)
|+|+|||.+.++ +.|.++|+.. +.|.++.+.++ +
T Consensus 1 v~i~nlp~~~~~---~~l~~~f~~~--g~v~~v~~~~~--------------------------------~--------- 34 (70)
T PF14259_consen 1 VYISNLPPSTTE---EDLRNFFSRF--GPVEKVRLIKN--------------------------------K--------- 34 (70)
T ss_dssp EEEESSTTT--H---HHHHHHCTTS--SBEEEEEEEES--------------------------------T---------
T ss_pred CEEeCCCCCCCH---HHHHHHHHhc--CCcceEEEEee--------------------------------e---------
Confidence 689999997663 7899999887 44666666521 0
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcc
Q 005216 272 KRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQ 316 (708)
Q Consensus 272 ~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~ 316 (708)
+ ....+.|||+|.++.+|..|.+...
T Consensus 35 ------------------~-~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 35 ------------------D-GQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp ------------------T-SSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ------------------c-cccCCEEEEEeCCHHHHHHHHHHCC
Confidence 0 0136899999999999999998764
No 17
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=92.31 E-value=0.31 Score=48.43 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=25.8
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 191 TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
-|.|-|+|.++.+ +.|++||+++ |.+++.+++.
T Consensus 14 KifVggL~w~T~~---~~l~~yFeqf--GeI~eavvit 46 (247)
T KOG0149|consen 14 KIFVGGLAWETHK---ETLRRYFEQF--GEIVEAVVIT 46 (247)
T ss_pred EEEEcCcccccch---HHHHHHHHHh--CceEEEEEEe
Confidence 3899999998764 8899999998 5666666653
No 18
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=90.98 E-value=0.82 Score=45.75 Aligned_cols=77 Identities=22% Similarity=0.217 Sum_probs=55.0
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
..-||.|+|+|.+.++ +.|++.|..+ |.+.++.+++|-
T Consensus 188 D~~tvRvtNLsed~~E---~dL~eLf~~f--g~i~rvylardK------------------------------------- 225 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMRE---DDLEELFRPF--GPITRVYLARDK------------------------------------- 225 (270)
T ss_pred ccceeEEecCccccCh---hHHHHHhhcc--CccceeEEEEcc-------------------------------------
Confidence 4569999999998775 5677777766 446777777640
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCCCC--ceeecC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTD--WLLEQA 328 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~p~~--~~v~~A 328 (708)
+...+.|-|||||.++++|+.|...+....-.+ ++|+.|
T Consensus 226 ----------------------~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 226 ----------------------ETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ----------------------ccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 001236999999999999999998887654433 345544
No 19
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=90.90 E-value=0.66 Score=50.24 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=50.7
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
.++|.|.|||.+.++ +.|+++|+.+ |.|.++.+++|..
T Consensus 269 ~~~lfV~NL~~~~~e---~~L~~~F~~f--G~v~~v~i~~d~~------------------------------------- 306 (352)
T TIGR01661 269 GYCIFVYNLSPDTDE---TVLWQLFGPF--GAVQNVKIIRDLT------------------------------------- 306 (352)
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeEcCC-------------------------------------
Confidence 357999999997764 7899999987 5677777765310
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
. ..+.|.|||+|.+.++|..|.+.++..
T Consensus 307 ---------------------t-~~skG~aFV~F~~~~~A~~Ai~~lnG~ 334 (352)
T TIGR01661 307 ---------------------T-NQCKGYGFVSMTNYDEAAMAILSLNGY 334 (352)
T ss_pred ---------------------C-CCccceEEEEECCHHHHHHHHHHhCCC
Confidence 0 112589999999999999999987754
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=90.38 E-value=0.85 Score=52.99 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=29.3
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEccc
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQT 230 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~ 230 (708)
...+|.|+|+|.+.++ +.|+++|+++ |.+.++.+.+|.
T Consensus 177 ~~~~l~V~nl~~~~te---e~L~~~F~~f--G~i~~~~i~~~~ 214 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNE---DKLRELFAKF--GEITSAAVMKDG 214 (562)
T ss_pred CCCeEEEeCCCCcCCH---HHHHHHHHhc--CCEEEEEEEECC
Confidence 4468999999997764 7899999887 567777776653
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=90.25 E-value=1 Score=48.80 Aligned_cols=67 Identities=16% Similarity=0.340 Sum_probs=49.2
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
.+.+|.|.|||.+.++ +.|+++|+++ +.|.++.+.+|-
T Consensus 192 ~~~~lfV~nLp~~vte---e~L~~~F~~f--G~V~~v~i~~d~------------------------------------- 229 (346)
T TIGR01659 192 KDTNLYVTNLPRTITD---DQLDTIFGKY--GQIVQKNILRDK------------------------------------- 229 (346)
T ss_pred ccceeEEeCCCCcccH---HHHHHHHHhc--CCEEEEEEeecC-------------------------------------
Confidence 4678999999997764 7889999877 456665554320
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
...+..+.|||+|++.++|..|.+.+...
T Consensus 230 ----------------------~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 230 ----------------------LTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred ----------------------CCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 00122589999999999999999987654
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=88.80 E-value=1.7 Score=50.21 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=27.6
Q ss_pred cEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCC
Q 005216 296 QAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEP 331 (708)
Q Consensus 296 ~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P 331 (708)
+.|||.|++.++|..|.+.+.... ...++|+.|..+
T Consensus 270 gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 270 DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 479999999999999998776543 345677777544
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=88.04 E-value=5.6 Score=40.21 Aligned_cols=132 Identities=19% Similarity=0.189 Sum_probs=75.8
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHH---------HHHHHHHHHHHHh--hccCC----C
Q 005216 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRL---------MDYAKKLYGRLIH--LQSDS----N 255 (708)
Q Consensus 191 TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L---------~~~~~~~~~~le~--~~~k~----~ 255 (708)
-+.|.-+|.+..+ ++++..|... |+++++.++||--.=+.| -++.+++.+.+.. ++.|. -
T Consensus 43 NLIvNYLPQ~MTq---dE~rSLF~Si--GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQ---DELRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred eeeeeecccccCH---HHHHHHhhcc--cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3666778887654 7899999876 678888888874322221 1344555555553 33332 1
Q ss_pred CCC-----C------CC-CccchHHHHHHHHHHHHHHHHHHH-hhhhhc---CCCCcEEEEEecCHHHHHHHHHhcccCC
Q 005216 256 QEK-----N------QQ-RKVDLVDHYGKRLENIEENSRLER-SEVSMA---RHELQAAFVSFKSRYGAAIAFHMQQSTN 319 (708)
Q Consensus 256 ~rP-----k------~g-~kvd~i~~~~~~i~~l~~~I~~~~-~~~~~~---~~~~~~AFVtF~s~~~a~~a~q~~~~~~ 319 (708)
.|| | .| .|. .-++|+|++-...-..- .++..+ .-..|.+||.|+...+|..|...+...+
T Consensus 118 ARPSs~~Ik~aNLYvSGlPkt----MtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKT----MTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChhhhcccceEEecCCcc----chHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 266 1 11 111 11334444433322211 111111 1136999999999999999999999888
Q ss_pred CCC----ceeecCCCC
Q 005216 320 PTD----WLLEQAPEP 331 (708)
Q Consensus 320 p~~----~~v~~AP~P 331 (708)
|.. ..|+-|-.|
T Consensus 194 P~g~tepItVKFannP 209 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNP 209 (360)
T ss_pred CCCCCCCeEEEecCCc
Confidence 865 344555444
No 24
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=87.36 E-value=1.4 Score=48.40 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=27.0
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 229 (708)
...+-|.++++|.+..+ +.|.+||+.. .|++..+.++
T Consensus 8 ~~~~~vr~rGLPwsat~---~ei~~Ff~~~---~I~~~~~~r~ 44 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATE---KEILDFFSNC---GIENLEIPRR 44 (510)
T ss_pred CcceEEEecCCCccccH---HHHHHHHhcC---ceeEEEEecc
Confidence 45688999999997654 7788999865 4555555555
No 25
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=86.68 E-value=2.7 Score=43.92 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=60.6
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
.+-+.|+|||=+-+| -.|+..|+++ |.|.+|.|++|-
T Consensus 96 pkRLhVSNIPFrFRd---pDL~aMF~kf--G~VldVEIIfNE-------------------------------------- 132 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRD---PDLRAMFEKF--GKVLDVEIIFNE-------------------------------------- 132 (376)
T ss_pred CceeEeecCCccccC---ccHHHHHHhh--CceeeEEEEecc--------------------------------------
Confidence 467999999976554 4567777776 678999888751
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCC--CCcee----------ecCCCCCCccc
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNP--TDWLL----------EQAPEPNDVYW 336 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~p--~~~~v----------~~AP~P~DIiW 336 (708)
.+. .|.+||||++..+|..|.+.++...- .+..| +.-|-|.-.-|
T Consensus 133 ---------------------RGS--KGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v~p~~~g~ 189 (376)
T KOG0125|consen 133 ---------------------RGS--KGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKVLPYPNGW 189 (376)
T ss_pred ---------------------CCC--CccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcccCCCcccc
Confidence 112 48999999999999999999886421 11111 22345556678
Q ss_pred Cccccc
Q 005216 337 PFFSAS 342 (708)
Q Consensus 337 ~NL~~~ 342 (708)
+++...
T Consensus 190 ~~~~a~ 195 (376)
T KOG0125|consen 190 KLLPAV 195 (376)
T ss_pred ccccch
Confidence 877654
No 26
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.67 E-value=4.7 Score=47.43 Aligned_cols=52 Identities=13% Similarity=0.267 Sum_probs=43.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHhhhhHHHHHHHHH
Q 005216 401 TGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIF 452 (708)
Q Consensus 401 ~~~lP~lil~i~n~llp~ii~~ls~~eg~~t~S~~~~s~~~k~f~f~~~n~f 452 (708)
+..+-.+++.++|.+---+..+++.+|.+.|.|+.|.++.-|.|.||++|..
T Consensus 436 a~~in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~y 487 (861)
T KOG2514|consen 436 AVIINLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYY 487 (861)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhc
Confidence 3344445566667777777889999999999999999999999999999975
No 27
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=85.03 E-value=1.6 Score=38.93 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=39.8
Q ss_pred CCCCcCCcc-----chhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCC
Q 005216 529 EVPAIHYHS-----ELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKY 586 (708)
Q Consensus 529 ~~~~f~~~~-----~y~~~l~~~~i~l~Ys~i~Plil~~~~~yF~~~y~v~Ky~llyvy~~~~ 586 (708)
..++|+.+. .|+|. +..+|+.|||..|++ +++-+++.+++.|+.+++.++|+.
T Consensus 48 g~~eF~i~~nvL~liY~Qt--l~WiG~ffsPlLP~i---~~ik~~i~FYvKk~sll~~c~p~~ 105 (111)
T PF07810_consen 48 GKPEFDIPKNVLDLIYNQT--LVWIGMFFSPLLPAI---NVIKLFILFYVKKFSLLYNCQPPQ 105 (111)
T ss_pred CCCCccHhhhHHHHHHcch--hhhhhHHhchhHHHH---HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345555544 46654 457899999888874 677788888999999999998863
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=84.27 E-value=5 Score=46.59 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=33.1
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCCCCcccCc
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYWPF 338 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P~DIiW~N 338 (708)
..|+|||.|.+.++|..|.+.+.... ...++|..|..|.|=.|..
T Consensus 245 sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~p 291 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQP 291 (612)
T ss_pred cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCCC
Confidence 46899999999999999998876542 3456677666555555643
No 29
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=82.81 E-value=1.3 Score=43.94 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=35.1
Q ss_pred CCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCCCCcccC
Q 005216 292 RHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYWP 337 (708)
Q Consensus 292 ~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P~DIiW~ 337 (708)
.|-.|.|||+|++..+|-.|...++.-. ...++++.|=+++||+=+
T Consensus 49 ~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 49 PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 4458999999999998888877665432 245678888888888766
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=80.31 E-value=4.8 Score=45.33 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=28.3
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
..+||.|.|||.+.++ +.|+++|++. |.|.+|.+++
T Consensus 88 ~~~~l~V~nlp~~~~~---~~l~~~F~~~--G~v~~v~i~~ 123 (457)
T TIGR01622 88 DDRTVFVLQLALKARE---RDLYEFFSKV--GKVRDVQCIK 123 (457)
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEee
Confidence 4689999999997764 7799999887 4677776654
No 31
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=79.37 E-value=2.5 Score=32.29 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=21.1
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
.+.|||+|.+.++|..|.+.++..
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 489999999999999999877654
No 32
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=78.54 E-value=4.5 Score=46.04 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=28.9
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcc
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 229 (708)
+++|.|.|||.+.++ +.|++.|+++ |.|.++.++.+
T Consensus 2 s~vv~V~nLp~~~te---~~L~~~f~~f--G~V~~v~i~~~ 37 (481)
T TIGR01649 2 SPVVHVRNLPQDVVE---ADLVEALIPF--GPVSYVMMLPG 37 (481)
T ss_pred ccEEEEcCCCCCCCH---HHHHHHHHhc--CCeeEEEEECC
Confidence 579999999998764 7889999987 56777777653
No 33
>PLN03121 nucleic acid binding protein; Provisional
Probab=76.75 E-value=3.6 Score=41.65 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=31.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 229 (708)
+.-|||.|+||+.+..+ +.|++||+.. |.|.++.+.+|
T Consensus 3 ~~g~TV~V~NLS~~tTE---~dLrefFS~~--G~I~~V~I~~D 40 (243)
T PLN03121 3 PGGYTAEVTNLSPKATE---KDVYDFFSHC--GAIEHVEIIRS 40 (243)
T ss_pred CCceEEEEecCCCCCCH---HHHHHHHHhc--CCeEEEEEecC
Confidence 34599999999998764 8899999986 77888888754
No 34
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=76.68 E-value=2.3 Score=43.64 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=61.9
Q ss_pred EEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccc--hHHHHHHHHHHHHHHHHhhc------------cCCCCC
Q 005216 192 VLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTS--NLCRLMDYAKKLYGRLIHLQ------------SDSNQE 257 (708)
Q Consensus 192 Vlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~--~L~~L~~~~~~~~~~le~~~------------~k~~~r 257 (708)
+.|-|+|.+.++ .+++..|+++ ++|.++-|+.|.+ .+++-... +.+.+.|.+|+ +|.+-+
T Consensus 5 LFIGNLp~~~~~---~elr~lFe~y--gkVlECDIvKNYgFVHiEdktaa-edairNLhgYtLhg~nInVeaSksKsk~s 78 (346)
T KOG0109|consen 5 LFIGNLPREATE---QELRSLFEQY--GKVLECDIVKNYGFVHIEDKTAA-EDAIRNLHGYTLHGVNINVEASKSKSKAS 78 (346)
T ss_pred hhccCCCcccch---HHHHHHHHhh--CceEeeeeecccceEEeeccccc-HHHHhhcccceecceEEEEEeccccCCCc
Confidence 457799987664 6788889988 7899999988876 33332222 23344455443 121112
Q ss_pred CC--CCCccchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 005216 258 KN--QQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (708)
Q Consensus 258 Pk--~g~kvd~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~ 317 (708)
+| .|...+. ++ -+|+.++.++.---+..+ --.++|||-|+...+|..|...+..
T Consensus 79 tkl~vgNis~t---ct--n~ElRa~fe~ygpviecd-ivkdy~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 79 TKLHVGNISPT---CT--NQELRAKFEKYGPVIECD-IVKDYAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred cccccCCCCcc---cc--CHHHhhhhcccCCceeee-eecceeEEEEeeccchHHHHhcccc
Confidence 23 2222221 10 012222222111100001 1158999999999999999866543
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=75.22 E-value=11 Score=43.16 Aligned_cols=76 Identities=13% Similarity=0.279 Sum_probs=52.1
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
.++|.|.|||...++ +.|+++|+.+ |.+..+.+++|.
T Consensus 295 ~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~~~~~~~~-------------------------------------- 331 (509)
T TIGR01642 295 KDRIYIGNLPLYLGE---DQIKELLESF--GDLKAFNLIKDI-------------------------------------- 331 (509)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEecC--------------------------------------
Confidence 478999999987654 7788888887 345555554320
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCC--CCceeecC
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNP--TDWLLEQA 328 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~p--~~~~v~~A 328 (708)
...+..|.|||+|.+..+|..|.+.+..... ..+.|+.|
T Consensus 332 ---------------------~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 332 ---------------------ATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred ---------------------CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 0012368999999999999999988765432 33455544
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=73.73 E-value=22 Score=40.45 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=26.6
Q ss_pred cceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 188 HQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 188 ~~~TVlv~~IP~-~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
...+|+|.|||. +.+ .+.|++.|+++ |.|.++.+.+
T Consensus 274 ~~~~l~v~nL~~~~vt---~~~L~~lF~~y--G~V~~vki~~ 310 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVN---CDRLFNLFCVY--GNVERVKFMK 310 (481)
T ss_pred CCCEEEEeCCCCCCCC---HHHHHHHHHhc--CCeEEEEEEe
Confidence 457999999997 444 37889999887 5676665543
No 37
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=73.59 E-value=9.1 Score=42.80 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=25.2
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEE
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVI 227 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 227 (708)
+||.|+|+|-+..+ +.|.++|+++. .+..+.+|
T Consensus 293 ~tVFvRNL~fD~tE---Eel~~~fskFG--~v~ya~iV 325 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTE---EELKEHFSKFG--EVKYAIIV 325 (678)
T ss_pred ceEEEecCCccccH---HHHHHHHHhhc--cceeEEEE
Confidence 89999999987764 88999999884 45444454
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=72.66 E-value=11 Score=41.20 Aligned_cols=134 Identities=16% Similarity=0.094 Sum_probs=68.2
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcc-cchHH--------HHHHHHHHHHHHHHhhccCCCCCCC
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ-TSNLC--------RLMDYAKKLYGRLIHLQSDSNQEKN 259 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~-~~~L~--------~L~~~~~~~~~~le~~~~k~~~rPk 259 (708)
-.-|.|-.||+|.-+ +.|.-.|++. |.+-++.+-.| .+--. .-.++.+++.+.|..++-+.+++=+
T Consensus 83 G~EVfvGkIPrD~~E---deLvplfEki--G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFE---DELVPLFEKI--GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CceEEecCCCccccc---hhhHHHHHhc--cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 457999999998654 6778888877 44444444333 11000 0113344455555544332222111
Q ss_pred CCCccch-------HHHHHHHHHHHHHHHHHHHh---------hhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCCCC-
Q 005216 260 QQRKVDL-------VDHYGKRLENIEENSRLERS---------EVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTD- 322 (708)
Q Consensus 260 ~g~kvd~-------i~~~~~~i~~l~~~I~~~~~---------~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~p~~- 322 (708)
|+-.+|- |-. ..+-+++.+++++.-+ +..+..|+.|.|||.+.|-++|.++.|.+...+-.-
T Consensus 158 vc~Svan~RLFiG~IPK-~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klw 236 (506)
T KOG0117|consen 158 VCVSVANCRLFIGNIPK-TKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLW 236 (506)
T ss_pred EEEeeecceeEeccCCc-cccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeec
Confidence 1111110 000 0111222222332211 111223458999999999999999999987765433
Q ss_pred ---ceeecC
Q 005216 323 ---WLLEQA 328 (708)
Q Consensus 323 ---~~v~~A 328 (708)
..|..|
T Consensus 237 gn~~tVdWA 245 (506)
T KOG0117|consen 237 GNAITVDWA 245 (506)
T ss_pred CCcceeecc
Confidence 345555
No 39
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=69.84 E-value=3.9 Score=39.12 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=28.0
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC--CCCceeec
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQ 327 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~ 327 (708)
+.+.|||+|++..+|.-|...|..++ ...+.||+
T Consensus 46 PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 46 PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 37999999999999999999887776 34566765
No 40
>smart00361 RRM_1 RNA recognition motif.
Probab=69.47 E-value=6.4 Score=31.70 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.7
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
..|.|||+|++..+|..|.+.++..
T Consensus 36 ~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 36 KRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3689999999999999999887654
No 41
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=64.21 E-value=9.7 Score=33.12 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=18.2
Q ss_pred CcEEEEEecCHHHHHHHHHhccc
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQS 317 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~ 317 (708)
.|+|||-|.+.++|....+..+.
T Consensus 45 ~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 45 LGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred eEEEEEEcCCHHHHHHHHHHHcC
Confidence 68888888888888887776654
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=60.89 E-value=13 Score=40.61 Aligned_cols=84 Identities=13% Similarity=0.045 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHH---Hhhhh-hcCCCCcEEEEEecCHHHHHHHHHhcccC--CC-CCceeecCCCCCCcccCcccc
Q 005216 269 HYGKRLENIEENSRLE---RSEVS-MARHELQAAFVSFKSRYGAAIAFHMQQST--NP-TDWLLEQAPEPNDVYWPFFSA 341 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~---~~~~~-~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p-~~~~v~~AP~P~DIiW~NL~~ 341 (708)
-|+.+|.-+.++|-+. |-..+ .+..+.|+|||||.+...|+.|...+.+. ++ ..+.|...-.-.-..=.|+-.
T Consensus 95 ~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK 174 (506)
T KOG0117|consen 95 VFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPK 174 (506)
T ss_pred ccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCc
Confidence 4667777777766542 22111 12234799999999999999999988765 12 223333333345555566665
Q ss_pred chHHHHHHHHH
Q 005216 342 SFMRRWISKIV 352 (708)
Q Consensus 342 ~~~~r~~R~~~ 352 (708)
++.+--++.-+
T Consensus 175 ~k~keeIlee~ 185 (506)
T KOG0117|consen 175 TKKKEEILEEM 185 (506)
T ss_pred cccHHHHHHHH
Confidence 65554444433
No 43
>smart00362 RRM_2 RNA recognition motif.
Probab=60.75 E-value=11 Score=29.06 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=18.9
Q ss_pred CcEEEEEecCHHHHHHHHHhccc
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQS 317 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~ 317 (708)
.+.|||+|++..+|..|.+.+..
T Consensus 39 ~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 39 KGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CceEEEEeCCHHHHHHHHHHhCC
Confidence 57999999999999988876543
No 44
>smart00360 RRM RNA recognition motif.
Probab=55.21 E-value=16 Score=27.90 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.1
Q ss_pred CCcEEEEEecCHHHHHHHHHhcc
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQ 316 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~ 316 (708)
..+.|||+|++..+|..|.+.+.
T Consensus 37 ~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 37 SKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCceEEEEeCCHHHHHHHHHHcC
Confidence 36899999999999999988665
No 45
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=54.22 E-value=24 Score=35.97 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=38.7
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCCC-----CCceeecCCCCCCcccCccccchHHHHHHHHHHH
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQSTNP-----TDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVV 354 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~~~~p-----~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~ 354 (708)
..|+|||-|++..+|+.|...+++++- ..+.|+.| .+.++|.+||.--.
T Consensus 59 sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A------------DTdkER~lRRMQQm 112 (371)
T KOG0146|consen 59 SKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA------------DTDKERTLRRMQQM 112 (371)
T ss_pred CCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec------------cchHHHHHHHHHHH
Confidence 369999999999999999999987752 45667665 26788999986543
No 46
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=53.49 E-value=14 Score=37.86 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=27.6
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcc
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 229 (708)
..+|+.|-|+.++..+ +.|...|+++ |.|.++.+++|
T Consensus 5 ~prtlyvgnld~~vte---~~i~~lf~qi--g~v~~~k~i~~ 41 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTE---DFIATLFNQI--GSVTKTKVIFD 41 (321)
T ss_pred CCceEEeeccChhhHH---HHHHHHHHhc--cccccceeehh
Confidence 3589999999886554 6678888887 45667777766
No 47
>smart00362 RRM_2 RNA recognition motif.
Probab=53.44 E-value=17 Score=27.88 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=23.0
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEE
Q 005216 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVI 227 (708)
Q Consensus 191 TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 227 (708)
||.|+|+|.+..+ +.++++|++.. .+.++.+.
T Consensus 1 ~v~i~~l~~~~~~---~~l~~~~~~~g--~v~~~~~~ 32 (72)
T smart00362 1 TLFVGNLPPDVTE---EDLKELFSKFG--PIESVKIP 32 (72)
T ss_pred CEEEcCCCCcCCH---HHHHHHHHhcC--CEEEEEEe
Confidence 6889999987653 77888998763 45555444
No 48
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=50.48 E-value=4 Score=34.79 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCcceEEEEeccCCCC-CCchHHHHHHHhhhhC
Q 005216 186 QPHQFTVLVRSIPVSA-GSTIGDTVENFFKEFH 217 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~-~~~~~~~l~~~f~~~~ 217 (708)
..+.+||+|+|||... ++.+++.|+=||++-.
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~LeIhFqK~s 81 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLEIHFQKPS 81 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEEEEEecCC
Confidence 4678999999999843 3345555555666543
No 49
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=50.09 E-value=20 Score=27.65 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.3
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
.+.|||+|++.++|+.|.+.++..
T Consensus 40 ~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 40 KGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC
Confidence 689999999999999998876544
No 50
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=43.70 E-value=37 Score=26.07 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=24.4
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 191 TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
+|.|+|+|.+.++ +.++++|+.. +.+.++.+..
T Consensus 1 ~i~i~~l~~~~~~---~~i~~~~~~~--g~i~~~~~~~ 33 (74)
T cd00590 1 TLFVGNLPPDVTE---EDLRELFSKF--GKVESVRIVR 33 (74)
T ss_pred CEEEeCCCCccCH---HHHHHHHHhc--CCEEEEEEee
Confidence 5889999997653 7888999886 5566665553
No 51
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=38.92 E-value=93 Score=34.77 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=54.8
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHH
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~ 269 (708)
++|.|.|||.+..+ +.|.+.|++. |.|.++.+++|-
T Consensus 19 ~~v~vgnip~~~se---~~l~~~~~~~--g~v~s~~~v~D~--------------------------------------- 54 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSE---EQLLSIFSGV--GPVLSFRLVYDR--------------------------------------- 54 (435)
T ss_pred cceEecCCCCcccH---HHHHHHHhcc--Cccceeeecccc---------------------------------------
Confidence 89999999997654 7888999877 457777666541
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCC--CCceeecC
Q 005216 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNP--TDWLLEQA 328 (708)
Q Consensus 270 ~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~p--~~~~v~~A 328 (708)
+.+++.|.||+.|.++++|..|...+.+.+. ..++|..|
T Consensus 55 --------------------~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 55 --------------------ETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred --------------------cCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 0123479999999999999999988876543 44555444
No 52
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=36.39 E-value=32 Score=33.94 Aligned_cols=23 Identities=35% Similarity=0.267 Sum_probs=20.2
Q ss_pred CCcEEEEEecCHHHHHHHHHhcc
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQ 316 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~ 316 (708)
+-++|||.|.|.+-|.+|+.+..
T Consensus 91 SKgYAFVEFEs~eVA~IaAETMN 113 (214)
T KOG4208|consen 91 SKGYAFVEFESEEVAKIAAETMN 113 (214)
T ss_pred cCceEEEEeccHHHHHHHHHHhh
Confidence 36999999999999999998754
No 53
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=36.29 E-value=41 Score=33.54 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=20.0
Q ss_pred CcEEEEEecCHHHHHHHHHhccc
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQS 317 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~ 317 (708)
.+.|||||.|.+.|..|...+..
T Consensus 77 ~pvaFatF~s~q~A~aamnaLNG 99 (284)
T KOG1457|consen 77 KPVAFATFTSHQFALAAMNALNG 99 (284)
T ss_pred cceEEEEecchHHHHHHHHHhcC
Confidence 48999999999999999887754
No 54
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=35.77 E-value=1.9e+02 Score=30.49 Aligned_cols=59 Identities=14% Similarity=0.248 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhceeecCCCCCcc---ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 005216 557 PLILPFLLIYLCLAYIIYRNQFINVYEPKYETAG---KFWPIVHNSMIFSLVLMHAIAVGIFT 616 (708)
Q Consensus 557 Plil~~~~~yF~~~y~v~Ky~llyvy~~~~esgG---~~~~~~~~~~~~~l~i~q~~~~g~~~ 616 (708)
|..+++|+++.++-+.+||+-+.-+-.... ++. ..+|+++--++.|+++++....-+|.
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~-~~~~~~~~~~R~~lAvliaivIs~pl~l~iF~ 107 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDG-SRKRLLQALPRLLLAVLIAIVISEPLELKIFE 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999998886644332 121 34555555556666666666555553
No 55
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.02 E-value=32 Score=31.28 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 005216 13 NSGLCVLFFTLYSILRKQP 31 (708)
Q Consensus 13 ~~~~~~~~~~~F~~lR~~~ 31 (708)
.++++.++++.||+.|+|.
T Consensus 75 aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445666777888888763
No 56
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=34.87 E-value=3e+02 Score=26.52 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=30.6
Q ss_pred HHHHHhceeecCCCCCccccHHH---------HHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005216 573 IYRNQFINVYEPKYETAGKFWPI---------VHNSMIFSLVLMHAIAVGIFTIKKLSTA 623 (708)
Q Consensus 573 v~Ky~llyvy~~~~esgG~~~~~---------~~~~~~~~l~i~q~~~~g~~~l~~~~~~ 623 (708)
+--|.+-+.-+|.++.+|++=.. +..++.--+++.=++-++.......|..
T Consensus 60 ~~~~~l~~~~rp~~~~~g~Lv~~G~DL~~~G~l~ey~~Diiylt~~vq~l~~~s~~~w~l 119 (170)
T PF05620_consen 60 FCYYFLEKMARPKYDETGELVDAGEDLNQPGGLTEYMFDIIYLTWFVQVLSIISNKFWWL 119 (170)
T ss_pred HHHHHHHHhCCCCcCCCCCeecCcccccCCcchHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556667888755543222 5667777777777776666664444443
No 57
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=33.76 E-value=72 Score=35.79 Aligned_cols=39 Identities=10% Similarity=0.249 Sum_probs=29.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEccc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQT 230 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~ 230 (708)
+...||.|.|||.+..+ +.|+++|+.+ |.+.++.+.+|-
T Consensus 184 p~~~~l~v~nl~~~~te---~~l~~~f~~~--G~i~~v~~~~d~ 222 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITE---QELRQIFEPF--GDIEDVQLHRDP 222 (457)
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC
Confidence 45689999999987654 7889999876 456667666543
No 58
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.67 E-value=5.8e+02 Score=26.20 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=18.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhh
Q 005216 263 KVDLVDHYGKRLENIEENSRLERSEV 288 (708)
Q Consensus 263 kvd~i~~~~~~i~~l~~~I~~~~~~~ 288 (708)
+++.+--.+++|.+++.+|+..+.+.
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555567788888888888776543
No 59
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.21 E-value=79 Score=25.64 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=27.3
Q ss_pred cEEEEEecCHHHHHHHHHhcccCCCCCceeecCCCCCCc
Q 005216 296 QAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDV 334 (708)
Q Consensus 296 ~~AFVtF~s~~~a~~a~q~~~~~~p~~~~v~~AP~P~DI 334 (708)
....+||+|..+|-.+-+.+.+.+ ..++..|-|++|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~g---i~~~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNG---IPVRLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCC---CcEEEeCCChhc
Confidence 468999999999988888765543 345667778877
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=28.60 E-value=1.8e+02 Score=31.93 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=0.0
Q ss_pred EEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHHHH
Q 005216 192 VLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYG 271 (708)
Q Consensus 192 Vlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~~~ 271 (708)
|.|.|+|++.++ +.+.+.|+.. |.++++.+..|..-
T Consensus 79 ~~i~nl~~~~~~---~~~~d~f~~~--g~ilS~kv~~~~~g--------------------------------------- 114 (369)
T KOG0123|consen 79 VFIKNLDESIDN---KSLYDTFSEF--GNILSCKVATDENG--------------------------------------- 114 (369)
T ss_pred eeecCCCcccCc---HHHHHHHHhh--cCeeEEEEEEcCCC---------------------------------------
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCCCCceeecCCCCCC
Q 005216 272 KRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPND 333 (708)
Q Consensus 272 ~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~p~~~~v~~AP~P~D 333 (708)
..|. ||.|+++.+|+.|.+.+.+.--..=.+..+++.+.
T Consensus 115 ----------------------~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 115 ----------------------SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred ----------------------ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
No 61
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=26.84 E-value=1.1e+02 Score=26.02 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=24.2
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCCCCc
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDV 334 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P~DI 334 (708)
.++|.+.|.+++.|..|..-..... .....|+..|.+.|.
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~~ 80 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNREF 80 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S---
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcccc
Confidence 5899999999999999987666544 345666777766654
No 62
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.07 E-value=4.1e+02 Score=26.29 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHhcccC
Q 005216 627 IFPLPVLTLLFNEYCRKRFL 646 (708)
Q Consensus 627 ~~~l~~~t~~f~~~~~~~~~ 646 (708)
.+.+-++++...+|++++|.
T Consensus 183 ~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 183 YIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34455566677888888875
No 63
>PF02654 CobS: Cobalamin-5-phosphate synthase; InterPro: IPR003805 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CobS protein, a cobalamin-5-phosphate synthase that catyalzes the reactions: Adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP Adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP The protein product from these catalyses is associated with a large complex of proteins and is induced by cobinamide. CobS is involved in part III of cobalamin biosynthesis, one of the late steps in adenosylcobalamin synthesis that, together with CobU, CobT, and CobC proteins, defines the nucleotide loop assembly pathway [, ].; GO: 0008818 cobalamin 5'-phosphate synthase activity, 0009236 cobalamin biosynthetic process
Probab=25.73 E-value=4.4e+02 Score=26.77 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc---eeecCCCCCccccHHHHH--HHHHHHHHHHHHHHHH
Q 005216 539 LPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFI---NVYEPKYETAGKFWPIVH--NSMIFSLVLMHAIAVG 613 (708)
Q Consensus 539 y~~~l~~~~i~l~Ys~i~Plil~~~~~yF~~~y~v~Ky~ll---yvy~~~~esgG~~~~~~~--~~~~~~l~i~q~~~~g 613 (708)
|+...+++.+.+-|+.+.-+...-......+....-|...+ +..+|+.+.-|..+..-. +++..++.+.=+..+.
T Consensus 103 ~Gv~al~~~lllk~~~l~~l~~~~~~~~l~i~~~~~r~~~~~~~~~~~p~~~Glg~~f~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T PF02654_consen 103 FGVLALVLVLLLKYAALSSLPSHGLALALLIAPVLARLSMLLLAAFSKPRPEGLGALFVGSAKKRQVLIALIILLLLALF 182 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhHHhccCChhHHHHHHHHHHHHHHH
Confidence 34445555555555555444322222333333444555433 233444444455554332 2334444432222222
Q ss_pred HHHHhcccccceehhhHHHHHHHHHHHHhcccC
Q 005216 614 IFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFL 646 (708)
Q Consensus 614 ~~~l~~~~~~~~~~~~l~~~t~~f~~~~~~~~~ 646 (708)
+. ...+......+...+.+..+.++++++++
T Consensus 183 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~lG 213 (235)
T PF02654_consen 183 LG--GIPWIGLLALLVALLLALLLARYARRRLG 213 (235)
T ss_pred Hh--hhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 21 11122333344455667778888888876
No 64
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=25.65 E-value=1.3e+03 Score=28.12 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhceee
Q 005216 564 LIYLCLAYIIYRNQFINVY 582 (708)
Q Consensus 564 ~~yF~~~y~v~Ky~llyvy 582 (708)
++..++.||.+||+++|.-
T Consensus 211 ~l~~a~~y~L~ry~Ll~s~ 229 (774)
T PF03699_consen 211 FLLKAVGYWLDRYELLYSQ 229 (774)
T ss_pred HHHHHHHHHHHHHhHeecC
Confidence 4556788999999999983
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=25.52 E-value=1e+02 Score=35.11 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.2
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQSTN 319 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~~ 319 (708)
.|.|||+|.+..+|+.|.+.+....
T Consensus 464 ~G~~fV~F~~~e~A~~A~~~lnGr~ 488 (509)
T TIGR01642 464 VGKVFLEYADVRSAEKAMEGMNGRK 488 (509)
T ss_pred cceEEEEECCHHHHHHHHHHcCCCE
Confidence 4889999999999999999987654
No 66
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=24.58 E-value=80 Score=27.49 Aligned_cols=30 Identities=23% Similarity=0.363 Sum_probs=19.3
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcce
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYL 222 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~ 222 (708)
-|||++|||...++ +.|.+.+++.++|++.
T Consensus 2 TTvMirNIPn~~t~---~~L~~~l~~~~~g~yD 31 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQ---EMLIQILDEHFKGKYD 31 (97)
T ss_pred eeEEEecCCCCCCH---HHHHHHHHHhccCcce
Confidence 49999999996553 4455555544555543
No 67
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=24.42 E-value=6.8e+02 Score=25.77 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=44.1
Q ss_pred hHHHHHHhhhhHHHHHHHHHHh-hcccchHHHHHHHhh--CCCChHHHHhhhcCchhHHHHHHHHHHhhhhhhHHhHhhH
Q 005216 433 SDIQKSACNKVLWFMIWNIFFA-TVFSGSVLYQLNIVL--DPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIF 509 (708)
Q Consensus 433 S~~~~s~~~k~f~f~~~n~flv-~~i~~s~~~~l~~~~--~p~~i~~~L~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~ 509 (708)
|..|+.+.-|......+...+. +.+.|+...-++... ++.++.+.++.++|.--.+++-.++..-++..++.++=++
T Consensus 71 s~eqq~~ll~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~L~ivP 150 (248)
T PF06790_consen 71 SPEQQNVLLKASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFMLFIVP 150 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4445555555555554444443 223355555555544 4456777788877765555544444444455566666666
Q ss_pred HHHH
Q 005216 510 PLIC 513 (708)
Q Consensus 510 ~li~ 513 (708)
+...
T Consensus 151 GI~l 154 (248)
T PF06790_consen 151 GIIL 154 (248)
T ss_pred HHHH
Confidence 6544
No 68
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=24.23 E-value=1.4e+02 Score=22.84 Aligned_cols=46 Identities=17% Similarity=0.490 Sum_probs=30.8
Q ss_pred HHHHHhceeecCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005216 573 IYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKL 620 (708)
Q Consensus 573 v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~i~q~~~~g~~~l~~~ 620 (708)
..|+.++|.|+.+..++ .+|-.++ +.+++.+++-+.-++++.+.+.
T Consensus 4 l~rH~~myfce~k~R~N-sF~fVii-k~vismimylilGi~L~yis~~ 49 (54)
T PF04835_consen 4 LFRHCFMYFCENKLRPN-SFWFVII-KSVISMIMYLILGIALIYISSN 49 (54)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHH-HHHHHHHHHHHHHHHHhhhccC
Confidence 46889999998765544 4565544 4566777777777777665543
No 69
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=22.86 E-value=91 Score=31.18 Aligned_cols=35 Identities=20% Similarity=0.463 Sum_probs=26.6
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
.+||.|.|||.+.++ +.|.++|.++.+ +.++.+.+
T Consensus 115 ~~~l~v~nL~~~~~~---~~l~~~F~~~g~--~~~~~~~~ 149 (306)
T COG0724 115 NNTLFVGNLPYDVTE---EDLRELFKKFGP--VKRVRLVR 149 (306)
T ss_pred CceEEEeCCCCCCCH---HHHHHHHHhcCc--eeEEEeee
Confidence 499999999987764 789999998844 45555544
No 70
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=22.70 E-value=1.6e+02 Score=31.54 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhhhh-------cCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 274 LENIEENSRLERSEVSM-------ARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 274 i~~l~~~I~~~~~~~~~-------~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
+.++++.+.++.++... +..+-|.|=|+|++...|..|.|+.+..
T Consensus 286 ~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 66777777776665432 1234789999999999999999998754
No 71
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.19 E-value=2.4e+02 Score=31.29 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=40.9
Q ss_pred CCcceEEEEE-cccch-HHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHhhhhhcCC--
Q 005216 218 PTTYLSHTVI-HQTSN-LCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYGKRLENIEENSRLERSEVSMARH-- 293 (708)
Q Consensus 218 p~~v~~v~i~-~~~~~-L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~~~~~i~~l~~~I~~~~~~~~~~~~-- 293 (708)
++. ....++ .|.++ +..+.++.+++.++++.++++..++| ++...++-.+++++.+++++++.++-......
T Consensus 228 ~d~-a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~---k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~ 303 (406)
T PF02388_consen 228 GDK-AKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP---KKKNKLKELEEQLASLEKRIEEAEELIAEYGDEI 303 (406)
T ss_dssp CCC-EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEE
T ss_pred CCC-eEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 555 333343 66665 44566666666666665443322222 11223445666677777777666653222111
Q ss_pred C-CcEEEEEecC
Q 005216 294 E-LQAAFVSFKS 304 (708)
Q Consensus 294 ~-~~~AFVtF~s 304 (708)
. .+.-||.+.+
T Consensus 304 ~la~~l~~~~g~ 315 (406)
T PF02388_consen 304 PLAGALFIYYGD 315 (406)
T ss_dssp EEEEEEEEEETT
T ss_pred eEEEEEEEEECC
Confidence 1 3444666654
No 72
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=21.72 E-value=2.8e+02 Score=27.48 Aligned_cols=95 Identities=12% Similarity=0.177 Sum_probs=49.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCCCCccccHHHHHHHHHHHHHHHHH-HHHHHHHHhccc---ccce
Q 005216 550 ITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHA-IAVGIFTIKKLS---TAST 625 (708)
Q Consensus 550 l~Ys~i~Plil~~~~~yF~~~y~v~Ky~llyvy~~~~esgG~~~~~~~~~~~~~l~i~q~-~~~g~~~l~~~~---~~~~ 625 (708)
.++..-.|+.++.+++||+...++-+.|.=..++. .+.+....|+-+.-+ +..|...+++.. ....
T Consensus 50 ~v~~~~~~~~i~~~i~yf~yLrYiL~~~~~f~id~----------epYR~FY~~Isli~~l~~~gyvlvr~~s~~~~~y~ 119 (206)
T PF09874_consen 50 YVFFISPLILIPLFIFYFIYLRYILIRNRNFMIDF----------EPYRFFYYGISLIGFLSFLGYVLVRRFSFEVYPYY 119 (206)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhccceeEech----------hHHHHHHHHHhhhhheeecchhhheeccchhhhHH
Confidence 34444456666777778877665544443333321 233333444333222 333444444432 2222
Q ss_pred eh-hhHHHHHHHHHHHHhcccCccccccCh
Q 005216 626 LI-FPLPVLTLLFNEYCRKRFLPNFIAYPA 654 (708)
Q Consensus 626 ~~-~~l~~~t~~f~~~~~~~~~~~~~~~pl 654 (708)
.. +...+..++|.++.+.+|.+...+=-.
T Consensus 120 ~yL~~v~laVl~fr~~Fr~ky~RdyTyG~V 149 (206)
T PF09874_consen 120 TYLGFVFLAVLAFRYYFRSKYGRDYTYGVV 149 (206)
T ss_pred HHHHHHHHHHHHHhhheeeeecccceeEEE
Confidence 22 223335567899999999998766444
Done!