Query 005216
Match_columns 708
No_of_seqs 246 out of 954
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:53:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 96.8 0.0081 2.8E-07 50.4 10.6 82 187-332 3-86 (95)
2 4fxv_A ELAV-like protein 1; RN 96.7 0.0044 1.5E-07 53.0 8.0 78 187-328 17-96 (99)
3 2lkz_A RNA-binding protein 5; 96.7 0.0031 1.1E-07 53.5 6.9 81 186-328 6-92 (95)
4 2jrs_A RNA-binding protein 39; 96.6 0.0095 3.2E-07 51.7 9.5 84 186-333 23-108 (108)
5 3s8s_A Histone-lysine N-methyl 96.6 0.0065 2.2E-07 53.0 8.3 79 187-329 4-84 (110)
6 3p5t_L Cleavage and polyadenyl 96.5 0.005 1.7E-07 51.4 6.9 80 190-331 2-83 (90)
7 2lxi_A RNA-binding protein 10; 96.5 0.0038 1.3E-07 52.4 6.1 76 190-328 2-80 (91)
8 1x5s_A Cold-inducible RNA-bind 96.5 0.015 5.2E-07 49.4 9.8 80 186-329 9-90 (102)
9 2dgs_A DAZ-associated protein 96.4 0.024 8.3E-07 47.9 10.5 82 186-332 7-90 (99)
10 3bs9_A Nucleolysin TIA-1 isofo 96.4 0.011 3.6E-07 48.7 7.9 78 187-328 4-83 (87)
11 4a8x_A RNA-binding protein wit 96.3 0.0078 2.7E-07 49.6 7.0 81 187-330 2-84 (88)
12 1whw_A Hypothetical protein ri 96.3 0.016 5.6E-07 48.9 9.1 82 186-331 5-88 (99)
13 1x5t_A Splicing factor 3B subu 96.3 0.015 5.2E-07 48.8 8.7 79 187-329 3-84 (96)
14 2dgp_A Bruno-like 4, RNA bindi 96.3 0.026 9E-07 48.3 10.3 80 186-329 10-94 (106)
15 1x5u_A Splicing factor 3B subu 96.3 0.023 7.9E-07 48.6 9.8 80 186-329 12-93 (105)
16 2dnh_A Bruno-like 5, RNA bindi 96.3 0.027 9.4E-07 48.1 10.3 79 186-329 12-95 (105)
17 2fy1_A RNA-binding motif prote 96.3 0.025 8.7E-07 49.6 10.2 77 187-328 5-83 (116)
18 2do4_A Squamous cell carcinoma 96.2 0.018 6.1E-07 48.9 8.9 79 186-329 14-94 (100)
19 3mdf_A Peptidyl-prolyl CIS-tra 96.2 0.012 4.1E-07 48.1 7.5 69 186-318 4-72 (85)
20 2x1f_A MRNA 3'-END-processing 96.2 0.017 5.6E-07 48.7 8.4 78 189-330 2-81 (96)
21 1fxl_A Paraneoplastic encephal 96.2 0.021 7E-07 52.8 9.7 101 188-352 1-109 (167)
22 2dgv_A HnRNP M, heterogeneous 96.1 0.025 8.4E-07 47.0 9.1 79 186-330 5-85 (92)
23 2cpz_A CUG triplet repeat RNA- 96.1 0.021 7.1E-07 49.9 9.0 80 186-329 22-103 (115)
24 3md1_A Nuclear and cytoplasmic 96.1 0.022 7.4E-07 46.3 8.6 76 190-329 2-79 (83)
25 2cq3_A RNA-binding protein 9; 96.1 0.044 1.5E-06 46.6 10.9 79 186-330 12-92 (103)
26 2e5h_A Zinc finger CCHC-type a 96.1 0.017 5.7E-07 48.3 7.9 69 186-318 13-81 (94)
27 2ywk_A Putative RNA-binding pr 96.1 0.019 6.5E-07 48.1 8.1 78 186-328 13-92 (95)
28 2dgo_A Cytotoxic granule-assoc 96.1 0.033 1.1E-06 48.5 9.9 79 186-328 12-92 (115)
29 1p27_B RNA-binding protein 8A; 96.0 0.032 1.1E-06 47.8 9.5 79 186-328 20-100 (106)
30 4f25_A Polyadenylate-binding p 96.0 0.02 6.8E-07 50.2 8.2 75 188-328 4-80 (115)
31 2cqc_A Arginine/serine-rich sp 96.0 0.021 7.1E-07 47.8 7.9 79 186-328 12-92 (95)
32 2cq0_A Eukaryotic translation 96.0 0.028 9.7E-07 47.9 8.8 80 186-329 12-93 (103)
33 2div_A TRNA selenocysteine ass 95.9 0.038 1.3E-06 46.6 9.6 80 186-329 6-92 (99)
34 2cph_A RNA binding motif prote 95.9 0.041 1.4E-06 47.1 9.8 82 186-330 12-96 (107)
35 2dhg_A TRNA selenocysteine ass 95.9 0.037 1.3E-06 47.1 9.4 78 186-328 6-87 (104)
36 2dnm_A SRP46 splicing factor; 95.9 0.028 9.6E-07 47.9 8.5 79 186-328 10-90 (103)
37 2cqi_A Nucleolysin TIAR; RNA r 95.9 0.047 1.6E-06 46.5 9.9 79 186-330 12-92 (103)
38 2cqd_A RNA-binding region cont 95.9 0.034 1.2E-06 48.6 9.1 79 186-328 14-93 (116)
39 3ulh_A THO complex subunit 4; 95.8 0.03 1E-06 48.0 8.6 79 185-328 25-105 (107)
40 2la6_A RNA-binding protein FUS 95.8 0.04 1.4E-06 46.6 9.2 79 186-328 10-98 (99)
41 1wi8_A EIF-4B, eukaryotic tran 95.8 0.035 1.2E-06 47.4 8.9 81 186-331 12-94 (104)
42 1oo0_B CG8781-PA, drosophila Y 95.8 0.036 1.2E-06 47.8 8.8 79 186-328 23-103 (110)
43 2cpj_A Non-POU domain-containi 95.7 0.045 1.6E-06 46.2 9.2 76 186-331 12-89 (99)
44 3ucg_A Polyadenylate-binding p 95.7 0.032 1.1E-06 46.0 8.0 76 188-328 5-82 (89)
45 2kt5_A RNA and export factor-b 95.7 0.051 1.8E-06 48.0 9.8 78 187-329 33-112 (124)
46 1b7f_A Protein (SXL-lethal pro 95.7 0.028 9.6E-07 52.1 8.5 101 188-352 2-110 (168)
47 2khc_A Testis-specific RNP-typ 95.7 0.029 9.9E-07 49.1 8.0 69 186-318 37-105 (118)
48 2cqg_A TDP-43, TAR DNA-binding 95.7 0.036 1.2E-06 47.2 8.4 81 186-330 12-92 (103)
49 1p1t_A Cleavage stimulation fa 95.7 0.019 6.4E-07 49.0 6.5 79 188-330 7-87 (104)
50 1h2v_Z 20 kDa nuclear CAP bind 95.7 0.041 1.4E-06 50.9 9.3 80 187-330 37-118 (156)
51 2dgw_A Probable RNA-binding pr 95.7 0.036 1.2E-06 46.0 8.1 76 186-328 7-84 (91)
52 2cqb_A Peptidyl-prolyl CIS-tra 95.7 0.025 8.6E-07 48.1 7.2 80 186-329 9-90 (102)
53 1x4h_A RNA-binding protein 28; 95.7 0.049 1.7E-06 47.0 9.2 79 187-329 13-99 (111)
54 3lqv_A PRE-mRNA branch site pr 95.7 0.051 1.7E-06 47.3 9.4 95 187-350 6-102 (115)
55 2d9p_A Polyadenylate-binding p 95.6 0.055 1.9E-06 46.0 9.4 78 186-329 12-91 (103)
56 2a3j_A U1 small nuclear ribonu 95.6 0.042 1.4E-06 49.2 8.9 87 187-337 27-116 (127)
57 1uaw_A Mouse-musashi-1; RNP-ty 95.6 0.039 1.3E-06 44.1 7.8 75 190-328 1-76 (77)
58 2dng_A Eukaryotic translation 95.6 0.052 1.8E-06 46.2 9.0 78 186-329 12-91 (103)
59 2cpd_A Apobec-1 stimulating pr 95.6 0.058 2E-06 45.5 9.2 73 186-328 12-86 (99)
60 2cqp_A RNA-binding protein 12; 95.6 0.023 7.7E-07 48.0 6.6 38 295-332 57-96 (98)
61 3s7r_A Heterogeneous nuclear r 95.6 0.027 9.1E-07 46.3 6.9 38 186-228 8-45 (87)
62 3ex7_B RNA-binding protein 8A; 95.6 0.049 1.7E-06 48.2 9.1 79 186-328 19-99 (126)
63 2dnp_A RNA-binding protein 14; 95.5 0.052 1.8E-06 44.9 8.6 72 185-328 5-78 (90)
64 2dnq_A RNA-binding protein 4B; 95.5 0.083 2.8E-06 43.7 9.9 72 186-329 5-78 (90)
65 1wg5_A Heterogeneous nuclear r 95.5 0.063 2.1E-06 45.9 9.2 84 187-337 13-99 (104)
66 2err_A Ataxin-2-binding protei 95.5 0.042 1.4E-06 47.6 8.1 77 186-328 26-104 (109)
67 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.5 0.039 1.3E-06 49.7 8.3 67 187-317 61-127 (140)
68 2cpf_A RNA binding motif prote 95.5 0.039 1.3E-06 46.5 7.7 81 187-328 3-85 (98)
69 2kxn_B Transformer-2 protein h 95.5 0.053 1.8E-06 48.5 9.0 79 186-328 43-123 (129)
70 2dgt_A RNA-binding protein 30; 95.5 0.064 2.2E-06 44.6 9.0 72 185-328 6-79 (92)
71 1x4a_A Splicing factor, argini 95.4 0.086 2.9E-06 45.3 10.0 75 187-328 20-96 (109)
72 1x4c_A Splicing factor, argini 95.4 0.055 1.9E-06 46.6 8.7 72 187-329 13-91 (108)
73 2ki2_A SS-DNA binding protein 95.4 0.028 9.5E-07 46.5 6.5 77 190-331 2-80 (90)
74 1s79_A Lupus LA protein; RRM, 95.4 0.038 1.3E-06 47.4 7.5 38 186-228 8-45 (103)
75 3nmr_A Cugbp ELAV-like family 95.4 0.061 2.1E-06 50.0 9.6 103 188-352 2-116 (175)
76 2do0_A HnRNP M, heterogeneous 95.4 0.062 2.1E-06 46.6 9.0 67 186-317 12-78 (114)
77 2cpe_A RNA-binding protein EWS 95.3 0.07 2.4E-06 46.2 9.1 34 295-328 65-100 (113)
78 1x4e_A RNA binding motif, sing 95.3 0.054 1.9E-06 44.2 7.8 68 187-318 3-70 (85)
79 1wg1_A KIAA1579 protein, homol 95.2 0.025 8.7E-07 46.7 5.7 37 295-331 40-78 (88)
80 2ytc_A PRE-mRNA-splicing facto 95.2 0.07 2.4E-06 43.5 8.3 36 186-226 9-44 (85)
81 3r27_A HnRNP L, heterogeneous 95.2 0.071 2.4E-06 45.5 8.4 74 185-328 17-94 (100)
82 1x5o_A RNA binding motif, sing 95.2 0.1 3.5E-06 45.2 9.8 67 187-318 23-89 (114)
83 1x4g_A Nucleolysin TIAR; struc 95.2 0.09 3.1E-06 45.2 9.3 75 186-330 22-98 (109)
84 3md3_A Nuclear and cytoplasmic 95.2 0.069 2.4E-06 49.1 9.2 97 190-351 1-107 (166)
85 2cpi_A CCR4-NOT transcription 95.2 0.044 1.5E-06 47.5 7.3 83 186-329 12-99 (111)
86 1wex_A Hypothetical protein (r 95.2 0.11 3.7E-06 44.6 9.7 74 186-329 12-89 (104)
87 1x4f_A Matrin 3; structural ge 95.2 0.091 3.1E-06 45.8 9.2 80 187-336 23-107 (112)
88 1sjq_A Polypyrimidine tract-bi 95.1 0.079 2.7E-06 45.6 8.6 74 186-329 13-90 (105)
89 2hgl_A HNRPF protein, heteroge 95.1 0.017 5.9E-07 52.4 4.6 78 187-328 42-122 (136)
90 2f3j_A RNA and export factor b 95.1 0.079 2.7E-06 50.3 9.4 85 187-336 86-172 (177)
91 2ek1_A RNA-binding protein 12; 95.1 0.032 1.1E-06 46.6 6.0 34 295-328 57-92 (95)
92 3beg_B Splicing factor, argini 95.1 0.075 2.6E-06 46.4 8.6 60 188-318 15-74 (115)
93 2lmi_A GRSF-1, G-rich sequence 95.1 0.073 2.5E-06 45.7 8.4 39 186-227 8-47 (107)
94 3ns6_A Eukaryotic translation 95.1 0.025 8.7E-07 48.1 5.3 80 188-328 5-90 (100)
95 1wf1_A RNA-binding protein RAL 95.1 0.069 2.4E-06 46.1 8.2 36 295-330 62-99 (110)
96 2mss_A Protein (musashi1); RNA 95.1 0.054 1.8E-06 43.0 7.0 31 191-226 1-31 (75)
97 2dgx_A KIAA0430 protein; RRM d 95.1 0.096 3.3E-06 44.0 8.8 77 185-328 5-87 (96)
98 2e44_A Insulin-like growth fac 95.0 0.13 4.4E-06 42.9 9.7 77 187-331 13-92 (96)
99 2j76_E EIF-4B, EIF4B, eukaryot 95.0 0.06 2.1E-06 45.6 7.6 79 186-329 16-96 (100)
100 2dha_A FLJ20171 protein; RRM d 95.0 0.033 1.1E-06 49.6 6.0 39 187-228 21-61 (123)
101 1why_A Hypothetical protein ri 94.9 0.11 3.8E-06 43.6 8.9 73 186-328 14-90 (97)
102 3n9u_C Cleavage and polyadenyl 94.8 0.075 2.6E-06 49.3 8.3 79 188-328 54-134 (156)
103 1whx_A Hypothetical protein ri 94.8 0.06 2.1E-06 46.7 7.2 73 188-330 9-83 (111)
104 2nlw_A Eukaryotic translation 94.8 0.14 4.6E-06 43.8 9.4 81 188-331 14-100 (105)
105 1u6f_A Tcubp1, RNA-binding pro 94.8 0.096 3.3E-06 47.2 8.7 77 188-328 41-119 (139)
106 2hvz_A Splicing factor, argini 94.8 0.12 4.1E-06 43.6 8.8 69 191-328 2-72 (101)
107 4f02_A Polyadenylate-binding p 94.8 0.1 3.4E-06 50.9 9.5 101 188-352 14-124 (213)
108 2ad9_A Polypyrimidine tract-bi 94.8 0.09 3.1E-06 46.4 8.1 74 186-329 28-105 (119)
109 1iqt_A AUF1, heterogeneous nuc 94.8 0.039 1.3E-06 43.8 5.3 20 295-314 41-60 (75)
110 1wez_A HnRNP H', FTP-3, hetero 94.7 0.073 2.5E-06 45.5 7.3 37 186-228 12-48 (102)
111 2dgu_A Heterogeneous nuclear r 94.7 0.098 3.4E-06 44.5 8.2 71 187-329 9-81 (103)
112 2dnl_A Cytoplasmic polyadenyla 94.7 0.055 1.9E-06 47.1 6.7 28 187-217 6-33 (114)
113 2i2y_A Fusion protein consists 94.7 0.2 6.9E-06 45.7 10.9 76 186-330 70-147 (150)
114 3d2w_A TAR DNA-binding protein 94.7 0.048 1.6E-06 45.3 5.9 37 185-226 7-43 (89)
115 2dh8_A DAZ-associated protein 94.7 0.057 1.9E-06 46.1 6.5 38 186-228 13-50 (105)
116 2cq1_A PTB-like protein L; RRM 94.7 0.12 4E-06 44.2 8.4 74 186-329 12-89 (101)
117 2dnn_A RNA-binding protein 12; 94.6 0.059 2E-06 46.8 6.5 35 188-228 15-49 (109)
118 1wf0_A TDP-43, TAR DNA-binding 94.6 0.036 1.2E-06 45.7 4.9 33 188-225 4-36 (88)
119 2dis_A Unnamed protein product 94.6 0.15 5.2E-06 43.6 9.2 81 186-328 5-89 (109)
120 2qfj_A FBP-interacting repress 94.6 0.16 5.5E-06 49.0 10.4 101 188-352 27-146 (216)
121 2kvi_A Nuclear polyadenylated 94.6 0.14 4.6E-06 43.0 8.5 71 186-328 7-80 (96)
122 3sde_A Paraspeckle component 1 94.5 0.15 5.3E-06 51.3 10.4 97 186-352 19-117 (261)
123 2pe8_A Splicing factor 45; RRM 94.5 0.16 5.5E-06 43.6 8.9 84 187-330 6-93 (105)
124 2cpy_A RNA-binding protein 12; 94.5 0.071 2.4E-06 46.4 6.7 38 186-228 12-50 (114)
125 2fc8_A NCL protein; structure 94.4 0.12 4E-06 43.8 7.9 36 295-330 54-91 (102)
126 2jvo_A Nucleolar protein 3; nu 94.4 0.15 5.3E-06 43.9 8.7 71 186-328 28-100 (108)
127 2krb_A Eukaryotic translation 94.4 0.14 4.9E-06 41.3 8.1 24 295-318 47-70 (81)
128 2jwn_A Embryonic polyadenylate 94.4 0.11 3.6E-06 45.8 7.8 76 189-329 36-113 (124)
129 2kn4_A Immunoglobulin G-bindin 94.4 0.14 4.7E-06 47.2 8.9 78 187-328 68-147 (158)
130 1x4d_A Matrin 3; structural ge 94.4 0.1 3.6E-06 44.6 7.3 74 187-330 13-91 (102)
131 2lea_A Serine/arginine-rich sp 94.3 0.085 2.9E-06 47.6 7.1 77 188-328 46-124 (135)
132 1x4b_A Heterogeneous nuclear r 94.3 0.13 4.3E-06 44.8 8.0 75 189-328 27-103 (116)
133 1l3k_A Heterogeneous nuclear r 94.3 0.16 5.5E-06 48.2 9.4 103 186-352 10-125 (196)
134 1nu4_A U1A RNA binding domain; 94.3 0.073 2.5E-06 44.6 6.1 40 295-334 51-92 (97)
135 2jvr_A Nucleolar protein 3; RN 94.3 0.11 3.7E-06 45.3 7.3 77 186-329 25-103 (111)
136 1rk8_A CG8781-PA, CG8781-PA pr 94.2 0.16 5.4E-06 47.3 9.1 79 186-328 69-149 (165)
137 2e5j_A Methenyltetrahydrofolat 94.2 0.27 9.2E-06 41.1 9.6 37 295-331 56-94 (97)
138 2la4_A Nuclear and cytoplasmic 94.1 0.17 5.8E-06 42.7 8.3 34 186-224 24-57 (101)
139 2m2b_A RNA-binding protein 10; 94.1 0.1 3.6E-06 46.6 7.2 67 187-318 21-89 (131)
140 2db1_A Heterogeneous nuclear r 94.0 0.077 2.6E-06 46.6 6.0 39 187-228 15-54 (118)
141 2rs2_A Musashi-1, RNA-binding 94.0 0.11 3.9E-06 44.7 7.0 78 187-328 23-101 (109)
142 2cjk_A Nuclear polyadenylated 93.9 0.066 2.2E-06 49.5 5.7 100 189-352 3-108 (167)
143 2xnq_A Nuclear polyadenylated 93.9 0.31 1.1E-05 40.9 9.4 71 186-328 19-92 (97)
144 3nmr_A Cugbp ELAV-like family 93.7 0.25 8.6E-06 45.7 9.4 67 187-318 93-159 (175)
145 2hgm_A HNRPF protein, heteroge 93.6 0.13 4.3E-06 45.9 6.6 27 187-216 40-66 (126)
146 1b7f_A Protein (SXL-lethal pro 93.5 0.25 8.4E-06 45.5 8.9 79 186-328 86-168 (168)
147 3md3_A Nuclear and cytoplasmic 93.4 0.27 9.3E-06 45.0 9.0 79 186-328 84-164 (166)
148 3smz_A Protein raver-1, ribonu 93.3 0.27 9.2E-06 49.9 9.6 59 295-353 57-117 (284)
149 2hgn_A Heterogeneous nuclear r 93.3 0.08 2.7E-06 48.1 4.9 35 187-227 44-78 (139)
150 2diu_A KIAA0430 protein; struc 93.2 0.11 3.7E-06 43.7 5.1 41 296-336 47-89 (96)
151 2qfj_A FBP-interacting repress 93.2 0.28 9.7E-06 47.2 9.1 77 188-328 124-202 (216)
152 2wbr_A GW182, gawky, LD47780P; 93.2 0.48 1.7E-05 39.2 8.9 72 187-328 5-78 (89)
153 2adc_A Polypyrimidine tract-bi 93.1 0.42 1.4E-05 47.0 10.3 37 186-227 31-68 (229)
154 1wel_A RNA-binding protein 12; 93.1 0.11 3.7E-06 45.9 5.4 33 295-328 67-101 (124)
155 3q2s_C Cleavage and polyadenyl 93.0 0.17 5.9E-06 50.0 7.3 80 188-329 67-148 (229)
156 1fxl_A Paraneoplastic encephal 92.8 0.4 1.4E-05 43.9 9.0 68 188-319 87-154 (167)
157 3tyt_A Heterogeneous nuclear r 92.4 0.55 1.9E-05 45.4 9.8 35 187-226 2-37 (205)
158 2voo_A Lupus LA protein; RNA-b 92.2 0.21 7.3E-06 47.9 6.5 35 189-228 109-143 (193)
159 1qm9_A Polypyrimidine tract-bi 92.2 0.42 1.4E-05 45.5 8.6 34 188-226 2-36 (198)
160 3ue2_A Poly(U)-binding-splicin 92.0 0.22 7.7E-06 43.7 5.9 86 188-330 19-108 (118)
161 2cjk_A Nuclear polyadenylated 92.0 0.39 1.3E-05 44.1 8.0 75 189-328 87-163 (167)
162 2g4b_A Splicing factor U2AF 65 91.7 0.37 1.3E-05 44.5 7.5 78 187-328 92-171 (172)
163 2ghp_A U4/U6 snRNA-associated 91.0 0.74 2.5E-05 46.7 9.6 99 187-353 39-139 (292)
164 1l3k_A Heterogeneous nuclear r 90.6 0.59 2E-05 44.1 7.9 78 187-329 102-181 (196)
165 3pgw_S U1-70K; protein-RNA com 90.6 0.62 2.1E-05 50.7 8.9 84 189-336 102-187 (437)
166 4f02_A Polyadenylate-binding p 90.4 0.53 1.8E-05 45.6 7.4 74 189-328 103-178 (213)
167 1jmt_A Splicing factor U2AF 35 90.2 0.69 2.4E-05 39.4 7.1 36 294-329 67-104 (104)
168 2yh0_A Splicing factor U2AF 65 90.1 0.8 2.7E-05 43.3 8.3 78 187-328 112-191 (198)
169 2g4b_A Splicing factor U2AF 65 90.0 1.5 5.3E-05 40.1 10.1 57 295-352 51-115 (172)
170 2dit_A HIV TAT specific factor 90.0 1 3.5E-05 38.7 8.1 44 295-338 64-109 (112)
171 3pgw_A U1-A; protein-RNA compl 89.5 1.5 5.3E-05 44.1 10.4 38 187-226 7-45 (282)
172 3u1l_A PRE-mRNA-splicing facto 89.4 0.95 3.2E-05 44.9 8.3 66 186-318 131-202 (240)
173 3smz_A Protein raver-1, ribonu 88.7 0.91 3.1E-05 45.9 7.9 81 187-332 182-265 (284)
174 3sde_A Paraspeckle component 1 88.6 1.1 3.8E-05 44.8 8.4 76 188-328 95-176 (261)
175 2yh0_A Splicing factor U2AF 65 86.8 2 6.9E-05 40.4 8.7 26 188-216 3-28 (198)
176 1qm9_A Polypyrimidine tract-bi 86.2 2 6.7E-05 40.6 8.2 73 187-328 118-194 (198)
177 3pgw_A U1-A; protein-RNA compl 85.3 2.2 7.5E-05 42.9 8.6 63 187-318 205-267 (282)
178 3s6e_A RNA-binding protein 39; 84.9 1.1 3.7E-05 39.0 5.1 35 295-329 55-91 (114)
179 3tyt_A Heterogeneous nuclear r 84.8 1.8 6.2E-05 41.7 7.3 67 186-318 120-188 (205)
180 2adc_A Polypyrimidine tract-bi 84.5 3.3 0.00011 40.3 9.2 74 187-329 149-226 (229)
181 2d9o_A DNAJ (HSP40) homolog, s 83.6 1.7 5.9E-05 36.7 5.7 35 295-329 54-88 (100)
182 2ghp_A U4/U6 snRNA-associated 83.3 1.8 6E-05 43.9 6.8 77 188-328 209-288 (292)
183 1fj7_A Nucleolin RBD1, protein 83.2 3.5 0.00012 34.2 7.6 35 294-329 57-93 (101)
184 3v4m_A Splicing factor U2AF 65 82.7 2.2 7.6E-05 36.3 6.1 35 295-329 59-95 (105)
185 2cpx_A Hypothetical protein FL 80.5 2.7 9.1E-05 35.9 6.0 35 294-328 66-102 (115)
186 2xs2_A Deleted in azoospermia- 78.9 1.9 6.7E-05 36.0 4.4 39 186-229 6-44 (102)
187 2fc9_A NCL protein; structure 75.0 3 0.0001 34.7 4.5 34 295-328 53-88 (101)
188 1sjr_A Polypyrimidine tract-bi 74.9 2.8 9.6E-05 38.9 4.6 35 295-329 84-122 (164)
189 2cq4_A RNA binding motif prote 74.9 2 7E-05 36.7 3.5 35 189-228 25-59 (114)
190 1fjc_A Nucleolin RBD2, protein 73.7 2.4 8.3E-05 34.9 3.5 35 295-329 53-89 (96)
191 1x5p_A Negative elongation fac 73.1 3.4 0.00012 34.1 4.3 35 295-329 49-85 (97)
192 2cqh_A IGF-II mRNA-binding pro 72.8 2.6 9.1E-05 34.4 3.5 35 295-329 44-81 (93)
193 2bz2_A Negative elongation fac 67.7 6.9 0.00024 34.0 5.3 35 295-329 73-109 (121)
194 2e5g_A U6 snRNA-specific termi 65.3 5 0.00017 32.8 3.7 32 187-223 6-37 (94)
195 2hzc_A Splicing factor U2AF 65 59.7 9.1 0.00031 30.4 4.3 26 188-216 5-30 (87)
196 2cq2_A Hypothetical protein LO 58.6 6.4 0.00022 34.1 3.2 23 296-318 64-86 (114)
197 2e5i_A Heterogeneous nuclear r 58.4 13 0.00045 32.6 5.3 37 296-332 62-103 (124)
198 2e5g_A U6 snRNA-specific termi 57.9 11 0.00038 30.6 4.6 35 296-331 46-82 (94)
199 3egn_A RNA-binding protein 40; 57.4 7.1 0.00024 34.7 3.5 35 294-328 91-127 (143)
200 1fje_B Nucleolin RBD12, protei 55.5 12 0.00039 34.2 4.7 59 294-353 53-121 (175)
201 1fje_B Nucleolin RBD12, protei 54.4 10 0.00034 34.6 4.1 36 293-328 134-171 (175)
202 2hzc_A Splicing factor U2AF 65 54.3 8.2 0.00028 30.7 3.1 22 295-317 53-74 (87)
203 3he5_A Synzip1; heterodimeric 52.9 7.8 0.00027 26.3 2.1 21 263-283 29-49 (49)
204 2diu_A KIAA0430 protein; struc 51.6 11 0.00037 31.5 3.3 38 186-224 6-44 (96)
205 2dhx_A Poly (ADP-ribose) polym 49.7 17 0.00058 30.8 4.2 35 188-225 7-44 (104)
206 2lcw_A RNA-binding protein FUS 54.7 3.6 0.00012 35.3 0.0 34 295-328 57-92 (116)
207 3zzy_A Polypyrimidine tract-bi 48.4 12 0.00043 33.0 3.4 35 296-330 67-105 (130)
208 2cq4_A RNA binding motif prote 46.4 8 0.00028 32.8 1.9 23 294-317 66-88 (114)
209 2lcw_A RNA-binding protein FUS 51.4 4.4 0.00015 34.7 0.0 28 187-217 5-32 (116)
210 2fc9_A NCL protein; structure 45.1 14 0.00047 30.4 3.1 28 186-216 12-39 (101)
211 2cqh_A IGF-II mRNA-binding pro 43.9 14 0.00048 29.8 2.9 30 186-218 5-34 (93)
212 2j8a_A Histone-lysine N-methyl 43.4 22 0.00074 31.6 4.1 37 190-231 3-43 (136)
213 2dnr_A Synaptojanin-1; RRM dom 38.9 17 0.00058 30.0 2.5 33 295-328 49-83 (91)
214 1fj7_A Nucleolin RBD1, protein 36.3 22 0.00075 29.1 3.0 27 188-217 16-42 (101)
215 1fjc_A Nucleolin RBD2, protein 36.1 23 0.00078 28.7 3.0 28 186-216 13-40 (96)
216 2cpx_A Hypothetical protein FL 35.9 26 0.00089 29.4 3.5 28 187-217 23-50 (115)
217 2kn4_A Immunoglobulin G-bindin 35.8 49 0.0017 29.5 5.6 62 293-354 11-93 (158)
218 3dxb_A Thioredoxin N-terminall 33.8 30 0.001 33.1 3.9 36 295-330 175-212 (222)
219 2xs2_A Deleted in azoospermia- 30.2 11 0.00038 31.1 0.1 19 295-313 50-68 (102)
220 2cq2_A Hypothetical protein LO 29.1 48 0.0016 28.5 3.9 37 187-228 23-61 (114)
221 3tht_A Alkylated DNA repair pr 28.9 34 0.0012 35.6 3.5 23 296-318 57-79 (345)
222 2dhx_A Poly (ADP-ribose) polym 26.9 1E+02 0.0035 25.9 5.4 45 296-340 48-95 (104)
223 3egn_A RNA-binding protein 40; 25.3 55 0.0019 28.7 3.9 29 186-217 42-70 (143)
224 1sjr_A Polypyrimidine tract-bi 24.9 60 0.0021 29.8 4.0 34 190-228 47-80 (164)
225 2rdd_B UPF0092 membrane protei 24.0 39 0.0013 22.7 1.9 17 553-569 4-20 (37)
226 3v4m_A Splicing factor U2AF 65 23.4 53 0.0018 27.4 3.2 41 188-230 4-51 (105)
227 3zzy_A Polypyrimidine tract-bi 23.1 69 0.0024 28.1 3.9 35 190-229 29-63 (130)
228 1ufw_A Synaptojanin 2; RNP dom 22.4 47 0.0016 27.6 2.5 19 295-313 58-76 (95)
229 2e5i_A Heterogeneous nuclear r 21.8 78 0.0027 27.5 4.0 32 192-228 28-59 (124)
230 2dit_A HIV TAT specific factor 21.5 92 0.0031 26.0 4.4 39 186-226 12-58 (112)
231 2lf0_A Uncharacterized protein 21.2 2.9E+02 0.0098 23.7 7.0 49 232-288 11-59 (123)
232 3twe_A Alpha4H; unknown functi 20.0 1.3E+02 0.0045 17.9 3.3 18 271-288 7-24 (27)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.0081 Score=50.44 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=59.3
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
+..+||.|.|||.+.++ +.|+++|+++ +.+.++.+.+|-
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~------------------------------------ 41 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITE---DMLRGIFEPF--GKIDNIVLMKDS------------------------------------ 41 (95)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEECCS------------------------------------
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEeecC------------------------------------
Confidence 45689999999997764 7899999987 457776665421
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCCC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPN 332 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P~ 332 (708)
...+..+.|||+|.+.++|..|.+.+... +...++|+.|.++.
T Consensus 42 -----------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 42 -----------------------DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp -----------------------SSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred -----------------------CCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 00123689999999999999999876654 23557777775443
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.72 E-value=0.0044 Score=52.95 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=57.3
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
.+..+|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 17 ~~gt~lfV~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~------------------------------------ 55 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQ---DELRSLFSSI--GEVESAKLIRDK------------------------------------ 55 (99)
T ss_dssp CCCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECS------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEeEeeecC------------------------------------
Confidence 34568999999998764 7899999987 567777776531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
...+..|.|||+|.+.++|..|.+.+... ....++|+.|
T Consensus 56 -----------------------~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 56 -----------------------VAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp -----------------------SSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -----------------------CCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 00112589999999999999999877544 2345667766
No 3
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.71 E-value=0.0031 Score=53.53 Aligned_cols=81 Identities=17% Similarity=0.200 Sum_probs=57.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.....||.|+|||.+.++ +.|+++|+++.+-.+.+|.+++|-
T Consensus 6 ~~~m~tlfV~nL~~~~te---e~L~~~F~~~G~i~v~~v~i~~d~----------------------------------- 47 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVV---DSIMTALSPYASLAVNNIRLIKDK----------------------------------- 47 (95)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHSTTTCCCCGGGEECCCCS-----------------------------------
T ss_pred CCccCEEEEeCCCCcCCH---HHHHHHHHhhCCccEEEEEEEecC-----------------------------------
Confidence 345679999999998764 889999998855455555554320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC------CCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN------PTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~------p~~~~v~~A 328 (708)
...++.|.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 48 ------------------------~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 48 ------------------------QTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp ------------------------SSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred ------------------------CCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 001236899999999999999999877643 234556555
No 4
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.61 E-value=0.0095 Score=51.68 Aligned_cols=84 Identities=14% Similarity=0.185 Sum_probs=61.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+..++|.|.|||.+.++ +.|+++|+++ |.+.++.+.+|-.
T Consensus 23 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITE---DMLRGIFEPF--GRIESIQLMMDSE---------------------------------- 63 (108)
T ss_dssp CSSCEEEEEECCCSSCCH---HHHHHHHTTT--SCEEEEEEEEETT----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcCC----------------------------------
Confidence 456799999999997664 7899999887 4577776664310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPND 333 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P~D 333 (708)
..+..|.|||+|.+..+|..|.+.+... ....++|+.|-+..|
T Consensus 64 -------------------------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~d 108 (108)
T 2jrs_A 64 -------------------------TGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 108 (108)
T ss_dssp -------------------------TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSCC
T ss_pred -------------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCCC
Confidence 0012589999999999999999877654 345677888866554
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.59 E-value=0.0065 Score=53.03 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=60.0
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
+..+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 4 ~p~~~lfV~nL~~~~te---~~L~~~F~~~--G~i~~v~i~~d~------------------------------------ 42 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRE---TFLKDMCRKY--GEVEEVEILLHP------------------------------------ 42 (110)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECT------------------------------------
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEECC------------------------------------
Confidence 45689999999997764 7899999987 568888877641
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
...++.|.|||+|++.++|+.|.+.+... ....+.|+.|+
T Consensus 43 -----------------------~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 43 -----------------------RTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp -----------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred -----------------------CCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 00123689999999999999999987654 23456777775
No 6
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.52 E-value=0.005 Score=51.36 Aligned_cols=80 Identities=5% Similarity=0.049 Sum_probs=53.9
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHH
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~ 269 (708)
+||.|.|||.+.++ +.|+++|+++.+..+.++.+.+|-
T Consensus 2 ~~l~V~nL~~~~t~---~~l~~~F~~~G~~~v~~v~i~~~~--------------------------------------- 39 (90)
T 3p5t_L 2 IALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENR--------------------------------------- 39 (90)
T ss_dssp --CEEESCCTTCCH---HHHHHHHHTTTCCCCCCEEEEECT---------------------------------------
T ss_pred eEEEEeCCCCCCCH---HHHHHHHHHhCCCceEEEEEEecC---------------------------------------
Confidence 68999999997764 789999998853367777766431
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCC
Q 005216 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEP 331 (708)
Q Consensus 270 ~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P 331 (708)
...+..|.|||+|.+..+|..|.+.+.... ...+.|+.|..|
T Consensus 40 --------------------~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 40 --------------------ANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp --------------------TTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred --------------------CCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 001125899999999999999998776543 345667766444
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.51 E-value=0.0038 Score=52.42 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=51.9
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHH
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~ 269 (708)
.+|.|+|||.+.++ +.|+++|+++.+ .+.++.+++|-
T Consensus 2 ~~i~v~nLp~~~te---~~l~~~F~~~G~-~v~~v~i~~d~--------------------------------------- 38 (91)
T 2lxi_A 2 NIVMLRMLPQAATE---DDIRGQLQSHGV-QAREVRLMRNK--------------------------------------- 38 (91)
T ss_dssp CEEEEETCCSSCCH---HHHHHHHHHHTC-CCSBCCSSSCS---------------------------------------
T ss_pred CEEEEeCCCCCCCH---HHHHHHHHHhCC-EeEEEEEEecC---------------------------------------
Confidence 68999999998764 789999998742 34444333210
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC---CCCCceeecC
Q 005216 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST---NPTDWLLEQA 328 (708)
Q Consensus 270 ~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~---~p~~~~v~~A 328 (708)
...++.|.|||+|.+.++|..|.+...+. +...++|+.|
T Consensus 39 --------------------~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 39 --------------------SSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp --------------------SSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred --------------------CCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 01123689999999999999998865332 2345666655
No 8
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.47 E-value=0.015 Score=49.45 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=57.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ +.|.++.+.+|-
T Consensus 9 ~~~~~~l~v~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 48 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNE---QSLEQVFSKY--GQISEVVVVKDR----------------------------------- 48 (102)
T ss_dssp CCCCSEEEEESCCTTCCH---HHHHHHHHHH--SCCCEEEECCCS-----------------------------------
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEEeCC-----------------------------------
Confidence 456789999999997764 7899999988 456666665320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP 329 (708)
...+..+.|||+|.+.++|..|.+.+.... ...++|+.|-
T Consensus 49 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 49 ------------------------ETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp ------------------------SSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred ------------------------CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 001136899999999999999998776542 3456666653
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.38 E-value=0.024 Score=47.90 Aligned_cols=82 Identities=15% Similarity=0.245 Sum_probs=57.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 7 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 46 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGE---TELREYFKKF--GVVTEVVMIYDA----------------------------------- 46 (99)
T ss_dssp CSSCCEEEEESCCSSCCH---HHHHHHHSSS--SCEEEEEECCCT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeCC-----------------------------------
Confidence 456789999999998764 7899999987 567776665320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPN 332 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P~ 332 (708)
...+..+.|||+|.+..+|..|.+ +... +...+.|+.|-.++
T Consensus 47 ------------------------~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 47 ------------------------EKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp ------------------------TTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred ------------------------CCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 001136899999999999999998 4432 23456677664433
No 10
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.35 E-value=0.011 Score=48.73 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=55.1
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
++.+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|-
T Consensus 4 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------ 42 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITT---AAIAAAFAPF--GRISDARVVKDM------------------------------------ 42 (87)
T ss_dssp --CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred CCceEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEecC------------------------------------
Confidence 45789999999997664 7899999987 457777665431
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..|.|||+|.+.++|..|.+.+.... ...+.|+.|
T Consensus 43 -----------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 43 -----------------------ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -----------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred -----------------------CCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 001125899999999999999998766532 334555544
No 11
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.35 E-value=0.0078 Score=49.63 Aligned_cols=81 Identities=10% Similarity=0.061 Sum_probs=55.9
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
....||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|. +
T Consensus 2 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~~----------------------------------~- 41 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTK---DHIMEIFSTY--GKIKMIDMPVER----------------------------------M- 41 (88)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEET----------------------------------T-
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEeCC----------------------------------C-
Confidence 34679999999998764 7899999887 456665554321 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPE 330 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~ 330 (708)
.+.+..|.|||+|.+.++|..|.+.+.... ...+.|+.|-.
T Consensus 42 -----------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 42 -----------------------HPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp -----------------------EEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred -----------------------CCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 001126899999999999999999776542 34456665533
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.33 E-value=0.016 Score=48.93 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=57.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 5 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 44 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSE---EDLEKLFSAY--GPLSELHYPIDS----------------------------------- 44 (99)
T ss_dssp CCSCEEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCCCT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEecC-----------------------------------
Confidence 345689999999997764 7899999987 456665553320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P 331 (708)
...+..+.|||+|.+.++|..|.+.+... +...+.|+.|-.+
T Consensus 45 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 45 ------------------------LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp ------------------------TTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred ------------------------CCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 00123689999999999999999876643 2345666666443
No 13
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.29 E-value=0.015 Score=48.79 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=55.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEE-EEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSH-TVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v-~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
...+||.|.|||.+.++ +.|+++|+++ |.+.++ .+.+|-
T Consensus 3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~~~i~~~~----------------------------------- 42 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDE---KLLYDTFSAF--GVILQTPKIMRDP----------------------------------- 42 (96)
T ss_dssp SCCCEEEEECCCTTCCH---HHHHHHHHTT--SCBSSCCEECCCT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEEcC-----------------------------------
Confidence 45689999999997764 7899999987 445555 443320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
...+..+.|||+|.+.++|..|.+.+... ....+.|+.|-
T Consensus 43 ------------------------~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 43 ------------------------DTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp ------------------------TTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred ------------------------CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 00113689999999999999999976654 23445666663
No 14
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.28 E-value=0.026 Score=48.31 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=57.8
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|- +
T Consensus 10 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------~ 50 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDE---KDLKPLFEEF--GKIYELTVLKDR----------------------------------F 50 (106)
T ss_dssp CTTCEEEEEESCCTTCCH---HHHHHHHHHH--SCCCEEECCCCS----------------------------------S
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEecC----------------------------------C
Confidence 456789999999997764 7899999988 456666554320 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC-----CCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN-----PTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~-----p~~~~v~~AP 329 (708)
..+..+.|||+|.+.++|..|.+.++... ...+.|+.|-
T Consensus 51 -------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 51 -------------------------TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp -------------------------SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred -------------------------CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 01236899999999999999998776543 3556777664
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.27 E-value=0.023 Score=48.59 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=57.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ +.|.++.+.+|- .
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~--------------------------------~-- 52 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSE---PLLWELFLQA--GPVVNTHMPKDR--------------------------------V-- 52 (105)
T ss_dssp CCTTTEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCBCS--------------------------------S--
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC--------------------------------C--
Confidence 456789999999997764 7899999987 456666554320 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
..+..+.|||+|.+.++|..|.+.++.. ....+.|+.|-
T Consensus 53 -------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 53 -------------------------TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp -------------------------SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred -------------------------CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 0123689999999999999999977654 23456777664
No 16
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.25 E-value=0.027 Score=48.09 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=57.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+..+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 12 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 51 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSE---EDVLRLFQPF--GVIDECTVLRGP----------------------------------- 51 (105)
T ss_dssp CCCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC-----------------------------------
Confidence 356789999999997764 7899999987 457777665420
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--C---CCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--P---TDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p---~~~~v~~AP 329 (708)
..+..+.|||+|.+..+|..|.+.+.... . ..+.|+.|-
T Consensus 52 -------------------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 52 -------------------------DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp -------------------------SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred -------------------------CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 01125899999999999999998776542 2 557777663
No 17
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.25 E-value=0.025 Score=49.61 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=55.6
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|- +
T Consensus 5 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------~- 44 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNE---KMLKAVFGKH--GPISEVLLIKDR----------------------------------T- 44 (116)
T ss_dssp CSCCEEEEECCTTTCCH---HHHHHHHHTS--SCCSEEEEECST----------------------------------T-
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEECC----------------------------------C-
Confidence 34689999999997764 7899999987 457777665420 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
.+..+.|||+|.+.++|..|.+.+.... ...+.|+.|
T Consensus 45 -------------------------g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 45 -------------------------SKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp -------------------------TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred -------------------------CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 1126899999999999999998776432 234556555
No 18
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.24 E-value=0.018 Score=48.88 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=57.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ |.+.++.+.+|-
T Consensus 14 ~~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 53 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTK---EELEEICKAH--GTVKDLRLVTNR----------------------------------- 53 (100)
T ss_dssp CCCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEECC-----------------------------------
Confidence 345789999999997764 7899999987 457777665420
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
..+..+.|||+|.+.++|..|.+.+... +...+.|+.|-
T Consensus 54 -------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 54 -------------------------AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp -------------------------TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred -------------------------CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 0112589999999999999999876643 33456676664
No 19
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=96.23 E-value=0.012 Score=48.14 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=50.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.++.++|.|.|||.+.++ +.|+++|+++ |.+.++.+.+|.
T Consensus 4 ~~~~~~l~V~nl~~~~~~---~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 43 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPLDY----------------------------------- 43 (85)
T ss_dssp CCCSSEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEECCEET-----------------------------------
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHhcc--CCEEEEEEEECC-----------------------------------
Confidence 346789999999997764 7899999987 456666554320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
...+..+.|||+|.+.++|..|.+.++..
T Consensus 44 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 44 ------------------------ETEKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp ------------------------TTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred ------------------------CCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence 00112689999999999999999876544
No 20
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.20 E-value=0.017 Score=48.70 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=55.6
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
+++|.|.|||.+.++ +.|+++|+++ |.+.++.+.+|-
T Consensus 2 ~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~-------------------------------------- 38 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTE---EQILDLCSNV--GPVINLKMMFDP-------------------------------------- 38 (96)
T ss_dssp CSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCBCT--------------------------------------
T ss_pred CcEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEeCC--------------------------------------
Confidence 479999999997764 7899999987 456665554320
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCC
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~ 330 (708)
...+..|.|||+|.+.++|..|.+.+... +...+.|+.|-+
T Consensus 39 ---------------------~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 39 ---------------------QTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp ---------------------TTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred ---------------------CCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 00123689999999999999999877654 234567777643
No 21
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.15 E-value=0.021 Score=52.84 Aligned_cols=101 Identities=11% Similarity=0.193 Sum_probs=68.2
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
+.+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|- .
T Consensus 1 s~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~~~~~~--------------------------------~---- 39 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQ---EEFRSLFGSI--GEIESCKLVRDK--------------------------------I---- 39 (167)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECT--------------------------------T----
T ss_pred CcceEEEcCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeCC--------------------------------C----
Confidence 3579999999998764 7899999987 457776665421 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCC------CCCcccCcc
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPE------PNDVYWPFF 339 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~------P~DIiW~NL 339 (708)
..+..|.|||+|.+.++|..|.+.+.... ...+.++.|.. ...+.-.||
T Consensus 40 -----------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl 96 (167)
T 1fxl_A 40 -----------------------TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 96 (167)
T ss_dssp -----------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESC
T ss_pred -----------------------CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCC
Confidence 01125899999999999999998765432 23455555542 234677777
Q ss_pred ccchHHHHHHHHH
Q 005216 340 SASFMRRWISKIV 352 (708)
Q Consensus 340 ~~~~~~r~~R~~~ 352 (708)
..+..+..++.++
T Consensus 97 ~~~~t~~~l~~~f 109 (167)
T 1fxl_A 97 PKTMTQKELEQLF 109 (167)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CCcCCHHHHHHHH
Confidence 7665555555544
No 22
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.14 E-value=0.025 Score=47.05 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=56.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+..+ +.|+++|+++ |.+.++.+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~~~i~~~~----------------------------------- 44 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTW---KMLKDKFNEC--GHVLYADIKMEN----------------------------------- 44 (92)
T ss_dssp SSSCCEEEECSCCTTCCH---HHHHHHHHTT--SCEEEEEEEESS-----------------------------------
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEccC-----------------------------------
Confidence 456789999999997664 7899999987 456665554210
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPE 330 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~ 330 (708)
.+..+.|||+|.+.++|..|.+.++... ...+.|+.|-.
T Consensus 45 --------------------------g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 45 --------------------------GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp --------------------------SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred --------------------------CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 1125899999999999999998766542 34456665543
No 23
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.14 E-value=0.021 Score=49.85 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=57.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+..++|.|.|||.+.++ +.|+++|+++ +.|.++.+.+|-.
T Consensus 22 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 62 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGD---QDLLQMFMPF--GNVVSAKVFIDKQ---------------------------------- 62 (115)
T ss_dssp CSTTCCEEEESCCSSCCH---HHHHHHHGGG--SCCSEEEEEECSS----------------------------------
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECCC----------------------------------
Confidence 345689999999998764 7899999987 4577776654310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
..+..+.|||+|.+.++|..|.+.+... ....++|+.|-
T Consensus 63 -------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 63 -------------------------TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp -------------------------SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred -------------------------CCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 0112589999999999999999876543 23445666553
No 24
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=96.13 E-value=0.022 Score=46.31 Aligned_cols=76 Identities=28% Similarity=0.390 Sum_probs=55.2
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHH
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~ 269 (708)
+||.|.|||.+.++ +.|+++|++. |.+.++.+.+|.
T Consensus 2 ~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~--------------------------------------- 37 (83)
T 3md1_A 2 FNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMWDM--------------------------------------- 37 (83)
T ss_dssp EEEEEECCCTTCCH---HHHHHHHTTS--TTEEEEEEEECT---------------------------------------
T ss_pred eEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEcC---------------------------------------
Confidence 79999999997764 7899999887 467777665431
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC
Q 005216 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (708)
Q Consensus 270 ~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP 329 (708)
...+..|.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 38 --------------------~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 38 --------------------QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp --------------------TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred --------------------CCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 001126899999999999999998776542 3445666663
No 25
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.12 E-value=0.044 Score=46.64 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=57.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~----------------------------------- 51 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFNE----------------------------------- 51 (103)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHGGGT--SCEEEEEEECCT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC-----------------------------------
Confidence 455789999999998764 7899999987 567776665320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~ 330 (708)
.. ..+.|||+|.+.++|..|.+.+... +...+.|+.|-.
T Consensus 52 ------------------------~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 52 ------------------------RG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp ------------------------TT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred ------------------------CC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 00 2589999999999999999876543 234456666543
No 26
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.10 E-value=0.017 Score=48.31 Aligned_cols=69 Identities=19% Similarity=0.312 Sum_probs=50.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+..++|.|.|||.+..+ +.|+++|+++ |.|.++.+.+|-
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~----------------------------------- 52 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTN---NDLYRIFSKY--GKVVKVTIMKDK----------------------------------- 52 (94)
T ss_dssp CCCTTSEEEESCCTTSCH---HHHHHHTTTT--SCEEEEEECCCS-----------------------------------
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEEeCC-----------------------------------
Confidence 456789999999997764 7899999887 456666664320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
...+..+.|||+|.+.++|..|.+.+...
T Consensus 53 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 81 (94)
T 2e5h_A 53 ------------------------DTRKSKGVAFILFLDKDSAQNCTRAINNK 81 (94)
T ss_dssp ------------------------SSCCCTTCEEEEESCHHHHHHHHHHTTTE
T ss_pred ------------------------CCCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 00112589999999999999999876543
No 27
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.06 E-value=0.019 Score=48.07 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=55.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 13 ~~~~~~l~v~nlp~~~~~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 52 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVRE---EILYELFLQA--GPLTKVTICKDR----------------------------------- 52 (95)
T ss_dssp TTGGGEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEECC-----------------------------------
Confidence 456789999999997764 7899999987 457777665420
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
. .+..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 53 ------------------------~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 53 ------------------------E-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp ------------------------T-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred ------------------------C-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 0 1125899999999999999998765432 234455544
No 28
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.06 E-value=0.033 Score=48.54 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=56.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 51 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITT---EDIKAAFAPF--GRISDARVVKDM----------------------------------- 51 (115)
T ss_dssp STTCEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC-----------------------------------
Confidence 456789999999997764 7899999987 457777776431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..+.|||+|.+.++|+.|.+.+.... ...+.|+.|
T Consensus 52 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 52 ------------------------ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp ------------------------TTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred ------------------------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 001125899999999999999998766432 234455544
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.02 E-value=0.032 Score=47.75 Aligned_cols=79 Identities=9% Similarity=0.085 Sum_probs=56.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 20 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 59 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLDR----------------------------------- 59 (106)
T ss_dssp BTTBEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCeEEEEEEecC-----------------------------------
Confidence 345689999999997764 7899999988 567777665431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 60 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 60 ------------------------RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp ------------------------TTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred ------------------------CCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 001125899999999999999998766542 345566554
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=95.99 E-value=0.02 Score=50.17 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=54.5
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
+..+|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|.
T Consensus 4 ~~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~d~------------------------------------- 41 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDE------------------------------------- 41 (115)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEET-------------------------------------
T ss_pred CCCEEEECCCCCCCCH---HHHHHHHhcc--CCEEEEEEeecC-------------------------------------
Confidence 3468999999998764 8899999988 567777765420
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
.. ..|.|||+|.+.++|+.|.+.+.... ...+.|+.|
T Consensus 42 ----------------------~~--~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 42 ----------------------NG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp ----------------------TE--EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ----------------------CC--CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 00 14799999999999999998766542 234556555
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.97 E-value=0.021 Score=47.78 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=56.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+..++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 12 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~----------------------------------- 51 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYDQ----------------------------------- 51 (95)
T ss_dssp CCGGGCEEEESCCSSCCH---HHHHHHHHTT--SCEEEEEEEECS-----------------------------------
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEEcC-----------------------------------
Confidence 456789999999997664 7899999987 457777665431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..+.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 52 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 52 ------------------------QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp ------------------------SSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ------------------------CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 001125899999999999999998765432 233455544
No 32
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.95 E-value=0.028 Score=47.85 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|- .
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~--------------------------------~-- 52 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRE---TDLQELFRPF--GSISRIYLAKDK--------------------------------T-- 52 (103)
T ss_dssp CSSSEEEEEESCCTTCCH---HHHHTTSTTT--CCEEEEEEEECS--------------------------------S--
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeecC--------------------------------C--
Confidence 456789999999997764 7899999987 457777665431 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP 329 (708)
..+..+.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 53 -------------------------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 53 -------------------------TGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp -------------------------SCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred -------------------------CCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 01125899999999999999998766542 3345666553
No 33
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.94 E-value=0.038 Score=46.59 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=56.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcce-EEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYL-SHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~-~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
.....||.|.|||.+.++ +.|+++|+++ +.+. ++.+.+|-
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~v~i~~~~---------------------------------- 46 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDE---NFISRAFATM--GETVMSVKIIRNR---------------------------------- 46 (99)
T ss_dssp CSSSSEEEECSCCTTCCH---HHHHHHHHHT--TCCCCEEEEEECS----------------------------------
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHHh--CCcceEEEEeecC----------------------------------
Confidence 445689999999998764 7899999987 4566 77665431
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCC----ceeecCC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTD----WLLEQAP 329 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~----~~v~~AP 329 (708)
...+..+.|||+|.+.++|..|.+.+.... ... ++|+.|-
T Consensus 47 -------------------------~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 47 -------------------------LTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp -------------------------SSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred -------------------------CCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 001125899999999999999999766431 222 6666653
No 34
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.91 E-value=0.041 Score=47.08 Aligned_cols=82 Identities=23% Similarity=0.301 Sum_probs=57.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|. +
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~--------------------------------~-- 52 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQ---REIRELFSTF--GELKTVRLPKKM--------------------------------T-- 52 (107)
T ss_dssp SSCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCCCC--------------------------------S--
T ss_pred CCCCCEEEEeCCCCcCCH---HHHHHHHHcc--CCeEEEEEecCC--------------------------------C--
Confidence 446789999999997764 7899999987 456666554320 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhc-ccC--CCCCceeecCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQ-QST--NPTDWLLEQAPE 330 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~-~~~--~p~~~~v~~AP~ 330 (708)
...+..+.|||+|.+.++|..|.+.+ ... ....+.|+.|-.
T Consensus 53 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 53 ------------------------GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp ------------------------SSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred ------------------------CCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 01123689999999999999999887 433 235567776643
No 35
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.90 E-value=0.037 Score=47.13 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=56.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhh-hCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKE-FHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~-~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
....++|.|.|||.+.++ +.|+++|++ + +.|.++.+.+|-
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~~--G~v~~v~i~~~~---------------------------------- 46 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDD---GMLYEFFVKVY--PSCRGGKVVLDQ---------------------------------- 46 (104)
T ss_dssp SSCCCCEEEECCCTTCCH---HHHHHHHHHHC--TTEEEEEEEECT----------------------------------
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHHhC--CCeEEEEEEECC----------------------------------
Confidence 345689999999998764 789999998 5 457777665420
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC---CCCceeecC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN---PTDWLLEQA 328 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~---p~~~~v~~A 328 (708)
. .+..+.|||+|.+.++|..|.+.+.... ...+.|+.|
T Consensus 47 -------------------------~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 47 -------------------------T-GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp -------------------------T-CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred -------------------------C-CCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 0 1125899999999999999998766533 234555555
No 36
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.88 E-value=0.028 Score=47.88 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=55.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 10 ~~~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 49 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSP---DSLRRVFEKY--GRVGDVYIPREP----------------------------------- 49 (103)
T ss_dssp CSCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEECCBCS-----------------------------------
T ss_pred CCCCeEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEeCC-----------------------------------
Confidence 345689999999998764 7899999987 456666554320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..+.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 50 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 50 ------------------------HTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp ------------------------SSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred ------------------------CCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 001136899999999999999998766543 344566655
No 37
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.88 E-value=0.047 Score=46.45 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=56.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 51 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTE---VLILQLFSQI--GPCKSCKMITEH----------------------------------- 51 (103)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHHHHH--SCEEEEEEECCC-----------------------------------
T ss_pred CCCCCEEEEeCCCccCCH---HHHHHHHHhc--CCEeEEEEEecC-----------------------------------
Confidence 345689999999997764 7899999988 457777665420
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~ 330 (708)
.. ..+.|||+|.+.++|..|.+.+... ....+.|+.|-.
T Consensus 52 ------------------------~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 52 ------------------------TS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp ------------------------CS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred ------------------------CC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 00 1479999999999999999876543 234566666643
No 38
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.86 E-value=0.034 Score=48.55 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=55.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ +.|.++.+.+|-
T Consensus 14 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 53 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTD---ASLRKYFEGF--GDIEEAVVITDR----------------------------------- 53 (116)
T ss_dssp SCSSSEEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEESCCS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeeEEEEEEcC-----------------------------------
Confidence 445789999999997764 7899999987 457776664320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC-CCCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST-NPTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~-~p~~~~v~~A 328 (708)
...+..+.|||+|.+.++|+.|.+.+... ....+.|+.|
T Consensus 54 ------------------------~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 54 ------------------------QTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp ------------------------SSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred ------------------------CCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 00113689999999999999998876531 2234566665
No 39
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=95.84 E-value=0.03 Score=48.00 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=56.7
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 185 PQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 185 ~~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
.....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~---------------------------------- 65 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVHYDR---------------------------------- 65 (107)
T ss_dssp CCCCSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECT----------------------------------
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC----------------------------------
Confidence 3456789999999997764 7899999987 457777665420
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
..+..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 66 --------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 66 --------------------------SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp --------------------------TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred --------------------------CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 01125899999999999999998765542 234555555
No 40
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=95.84 E-value=0.04 Score=46.56 Aligned_cols=79 Identities=15% Similarity=0.157 Sum_probs=54.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceE--------EEEEcccchHHHHHHHHHHHHHHHHhhccCCCCC
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLS--------HTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQE 257 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~--------v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~r 257 (708)
.+..++|.|.|||.+.++ +.|+++|++. |.+.+ +.+.+|-
T Consensus 10 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~--------------------------- 57 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTI---ESVADYFKQI--GIIKTNKKTGQPMINLYTDR--------------------------- 57 (99)
T ss_dssp CCCCSEEEEECCCSSCCH---HHHHHHHTTT--SCBCEETTTTEESEEEEECT---------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHh--CCEeeccccccccEEEEecC---------------------------
Confidence 456789999999998764 7899999987 34544 3333210
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 258 KNQQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 258 Pk~g~kvd~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..|.|||+|.+.++|+.|.+.+.... ...++|+.|
T Consensus 58 --------------------------------~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 58 --------------------------------ETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp --------------------------------TTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred --------------------------------CCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 001125899999999999999998766542 344555554
No 41
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.82 E-value=0.035 Score=47.37 Aligned_cols=81 Identities=9% Similarity=0.197 Sum_probs=56.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ + +.++.+.+|- .
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G-i~~v~i~~~~--------------------------------~-- 51 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPREP--------------------------------S-- 51 (104)
T ss_dssp SSSCEEEEEESCCSSCCH---HHHHHHTTTS--C-EEEEECCBCS--------------------------------S--
T ss_pred CCCCCEEEEeCCCCcCCH---HHHHHHHHHC--C-ceEEEEecCC--------------------------------C--
Confidence 446799999999998764 7899999987 4 7776664321 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P 331 (708)
...+..+.|||+|.+.++|..|. .+... ....+.|+.|-++
T Consensus 52 ------------------------~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 52 ------------------------NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp ------------------------CTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred ------------------------CCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence 00123689999999999999999 55443 2345667666443
No 42
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=95.78 E-value=0.036 Score=47.84 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 23 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 62 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLDR----------------------------------- 62 (110)
T ss_dssp BTTBEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEECCBCT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecC-----------------------------------
Confidence 446789999999997764 7899999988 456665554320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
...+..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 63 ------------------------~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 63 ------------------------RTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp ------------------------TTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ------------------------CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 00123689999999999999999876554 2334555554
No 43
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.75 E-value=0.045 Score=46.20 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=55.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+..+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~~~~------------------------------------- 49 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITE---EEMRKLFEKY--GKAGEVFIHK------------------------------------- 49 (99)
T ss_dssp CCCTTEEEEESCCTTCCH---HHHHHHTSTT--CCCSEEEEET-------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhhc--CCeEEEEEec-------------------------------------
Confidence 456689999999997764 7899999887 3455444320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEP 331 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P 331 (708)
..+.|||+|++.++|..|.+.++... ...+.|+.|-.+
T Consensus 50 ----------------------------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 50 ----------------------------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp ----------------------------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred ----------------------------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 03799999999999999998776543 355677777443
No 44
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=95.72 E-value=0.032 Score=45.96 Aligned_cols=76 Identities=11% Similarity=0.166 Sum_probs=54.0
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
+.+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|..
T Consensus 5 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 43 (89)
T 3ucg_A 5 DARSIYVGNVDYGATA---EELEAHFHGC--GSVNRVTILCDKF------------------------------------ 43 (89)
T ss_dssp HHTEEEEESCCTTCCH---HHHHHHHGGG--CCEEEEEEEESCS------------------------------------
T ss_pred cCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEecCC------------------------------------
Confidence 3579999999997764 7899999987 5677777764310
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
..+..+.|||+|.+.++|..|. .+... ....+.|+.|
T Consensus 44 -----------------------~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 44 -----------------------SGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp -----------------------SSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred -----------------------CCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 0112689999999999999998 55443 2334566655
No 45
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=95.72 E-value=0.051 Score=48.03 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=56.1
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|- +
T Consensus 33 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~~----------------------------------~- 72 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVDYDR----------------------------------S- 72 (124)
T ss_dssp SSCEEEEEESCCSSCCH---HHHHHHHHTT--SCCSEEEEECCS----------------------------------S-
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEECC----------------------------------C-
Confidence 35689999999997664 7899999987 457776665420 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
.+..|.|||+|.+.++|..|.+.+... +...+.|+.|.
T Consensus 73 -------------------------g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 73 -------------------------GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp -------------------------SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred -------------------------CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 112689999999999999999876543 23455666553
No 46
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.71 E-value=0.028 Score=52.08 Aligned_cols=101 Identities=13% Similarity=0.205 Sum_probs=67.9
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
+.+||.|.|||.+.++ +.|+++|+++ |.+.++.+.++. +
T Consensus 2 ~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i~~~~--------------------------------~---- 40 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTD---RELYALFRAI--GPINTCRIMRDY--------------------------------K---- 40 (168)
T ss_dssp CCSEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEET--------------------------------T----
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEeC--------------------------------C----
Confidence 4689999999998764 7899999987 446665553210 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC------CCCCcccCcc
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP------EPNDVYWPFF 339 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP------~P~DIiW~NL 339 (708)
..+..|.|||+|.+.++|..|.+.+... ....+.++.|. .+.-|.-.||
T Consensus 41 -----------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl 97 (168)
T 1b7f_A 41 -----------------------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNL 97 (168)
T ss_dssp -----------------------TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESC
T ss_pred -----------------------CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCC
Confidence 0112689999999999999999866543 22334454443 3455777888
Q ss_pred ccchHHHHHHHHH
Q 005216 340 SASFMRRWISKIV 352 (708)
Q Consensus 340 ~~~~~~r~~R~~~ 352 (708)
.....+..++.++
T Consensus 98 ~~~~t~~~l~~~f 110 (168)
T 1b7f_A 98 PRTITDDQLDTIF 110 (168)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHhh
Confidence 8766665555544
No 47
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=95.71 E-value=0.029 Score=49.12 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=51.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+..+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|- .
T Consensus 37 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~~--------------------------------~-- 77 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTD---TDLASTFLPF--GNVISAKVFIDK--------------------------------Q-- 77 (118)
T ss_dssp CCCSEEEEEECSCTTCCH---HHHHHHTTTS--CEEEEEEECCCS--------------------------------S--
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEeCC--------------------------------C--
Confidence 445689999999998764 7899999987 567666664320 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
..+..+.|||+|.+.++|..|.+.+...
T Consensus 78 -------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 78 -------------------------TSLSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp -------------------------SSCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred -------------------------CCCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 0123689999999999999999876543
No 48
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.70 E-value=0.036 Score=47.22 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=56.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-.
T Consensus 12 ~~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 52 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTE---QDLKEYFSTF--GEVLMVQVKKDLK---------------------------------- 52 (103)
T ss_dssp CCCCCCEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEEECSS----------------------------------
T ss_pred cCCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCeEEEEEEecCC----------------------------------
Confidence 345689999999997764 7899999987 4577777764310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCCCCceeecCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPE 330 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~p~~~~v~~AP~ 330 (708)
..+..+.|||+|.+..+|..|.+..+.-+...+.|+.|-.
T Consensus 53 -------------------------~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 53 -------------------------TGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp -------------------------SCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred -------------------------CCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 0112589999999999999998842222334456665543
No 49
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.68 E-value=0.019 Score=49.05 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=57.1
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
+.+||.|.|||.+..+ +.|+++|+++ |.+.++.+.+|-.
T Consensus 7 ~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~~~~------------------------------------ 45 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATE---EQLKDIFSEV--GPVVSFRLVYDRE------------------------------------ 45 (104)
T ss_dssp HHSCEEEESCCTTSCH---HHHHHHHHTT--SCCSEEEEEEETT------------------------------------
T ss_pred CccEEEEeCCCCcCCH---HHHHHHHHhc--CCeeEEEEEeCCC------------------------------------
Confidence 4589999999997664 7899999987 4577776654310
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPE 330 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~ 330 (708)
..+..|.|||+|.+..+|..|.+.+.... ...+.|+.|-.
T Consensus 46 -----------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 46 -----------------------TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp -----------------------TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred -----------------------CCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 00125899999999999999998776543 34567776643
No 50
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=95.67 E-value=0.041 Score=50.85 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=58.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...+||.|.|||.+.++ +.|+++|+++ +.|.++.+.+|-.
T Consensus 37 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~----------------------------------- 76 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTE---EQIYELFSKS--GDIKKIIMGLDKM----------------------------------- 76 (156)
T ss_dssp TTCCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-----------------------------------
Confidence 45689999999997764 7899999988 4577777764310
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~ 330 (708)
..+..+.|||+|.+.++|..|.+.+... ....+.|+.|..
T Consensus 77 ------------------------~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 77 ------------------------KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp ------------------------TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred ------------------------CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 0112589999999999999999876544 234566776643
No 51
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.67 E-value=0.036 Score=46.00 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=54.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|++. .+.++.+.+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~---~i~~v~i~~~~----------------------------------- 45 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTE---KNVMEFLAPL---KPVAIRIVRNA----------------------------------- 45 (91)
T ss_dssp CCCCCEEEEECCCSSCCH---HHHHHHHTTS---CCSEEEEEECT-----------------------------------
T ss_pred CCCccEEEEECCCCCCCH---HHHHHHHhhC---CceEEEEEECC-----------------------------------
Confidence 456789999999997764 7899999876 36666665420
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
..+..|.|||+|.+..+|+.|.+ +... ....+.|+.|
T Consensus 46 -------------------------~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 46 -------------------------HGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp -------------------------TSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred -------------------------CCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 01125899999999999999998 5543 2334555554
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.66 E-value=0.025 Score=48.07 Aligned_cols=80 Identities=14% Similarity=0.087 Sum_probs=55.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 9 ~~~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 48 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPLDY----------------------------------- 48 (102)
T ss_dssp CCCCSCEEEESCCSSCCH---HHHHHHHTTT--SCCCCEECCCCS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHhhcc--CCEEEEEEEecC-----------------------------------
Confidence 456789999999997764 7899999887 456555543220
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
...+..+.|||+|.+.++|..|.+.+... ....+.|+.|-
T Consensus 49 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 49 ------------------------ETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp ------------------------SSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred ------------------------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 00123689999999999999999876543 23345555553
No 53
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.65 E-value=0.049 Score=46.98 Aligned_cols=79 Identities=14% Similarity=0.226 Sum_probs=55.9
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------ 51 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEE---EALGEVLQQF--GDLKYVRVVLHP------------------------------------ 51 (111)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCBCS------------------------------------
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC------------------------------------
Confidence 45689999999998764 7899999987 456666554320
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcc------cC--CCCCceeecCC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQ------ST--NPTDWLLEQAP 329 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~------~~--~p~~~~v~~AP 329 (708)
...+..+.|||+|.+..+|..|.+.+. .. ....+.|+.|-
T Consensus 52 -----------------------~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 52 -----------------------DTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp -----------------------SSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred -----------------------CCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence 001136899999999999999998775 22 23455666553
No 54
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=95.65 E-value=0.051 Score=47.29 Aligned_cols=95 Identities=9% Similarity=0.094 Sum_probs=64.0
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...+||.|.|||.+..+ +.|+++|+++ |.+.++.+.+|
T Consensus 6 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~------------------------------------- 43 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITA---EEMYDIFGKY--GPIRQIRVGNT------------------------------------- 43 (115)
T ss_dssp TCCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEECS-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeC-------------------------------------
Confidence 34679999999997764 7899999987 55666655421
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCCCCcccCccccchH
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYWPFFSASFM 344 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P~DIiW~NL~~~~~ 344 (708)
.+..|.|||+|.+..+|..|.+.++... ...+.|+.|-.+.+- +|+.....
T Consensus 44 -------------------------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~--~~~~~~~~ 96 (115)
T 3lqv_A 44 -------------------------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF--QKMDTKKK 96 (115)
T ss_dssp -------------------------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT--TTSCHHHH
T ss_pred -------------------------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh--hhhhHhHh
Confidence 0014799999999999999999776543 355677766433322 55554444
Q ss_pred HHHHHH
Q 005216 345 RRWISK 350 (708)
Q Consensus 345 ~r~~R~ 350 (708)
+..++.
T Consensus 97 ~~~l~~ 102 (115)
T 3lqv_A 97 EEQLKL 102 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.65 E-value=0.055 Score=46.03 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=56.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~------------------------------------ 50 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDD---ERLRKAFSPF--GTITSAKVMME------------------------------------ 50 (103)
T ss_dssp CSSCCCEEEECCCTTCCH---HHHHHTTTTT--SCEEEEEEEEC------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcC------------------------------------
Confidence 346789999999998764 7899999987 45666665432
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
..+..+.|||+|.+..+|..|.+.++.. ....+.|+.|-
T Consensus 51 -------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 51 -------------------------GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp -------------------------SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred -------------------------CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 0112589999999999999999876654 23456666653
No 56
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=95.64 E-value=0.042 Score=49.20 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=61.8
Q ss_pred CcceEEEEeccCCCCC-CchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 187 PHQFTVLVRSIPVSAG-STIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~-~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
+...||.|.|||.+.. +++++.|.++|+++ |.|.++.+.+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~--G~I~~v~i~~------------------------------------- 67 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQ--GDILDIVVDL------------------------------------- 67 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECC-------------------------------------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccC--CCeEEEEecc-------------------------------------
Confidence 3468999999998654 34555677899988 4555543310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCCCCcccC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYWP 337 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P~DIiW~ 337 (708)
..+..|.|||+|.+..+|..|.+.+.... ...++|+.|-.++|...+
T Consensus 68 -------------------------~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 68 -------------------------SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp -------------------------CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred -------------------------CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 01125899999999999999998876543 346788888877777665
No 57
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.60 E-value=0.039 Score=44.05 Aligned_cols=75 Identities=11% Similarity=0.237 Sum_probs=51.7
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHH
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~ 269 (708)
.||.|.|||.+.++ +.|+++|++. |.+.++.+.+|-
T Consensus 1 ~~l~v~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~~--------------------------------------- 36 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVMRDP--------------------------------------- 36 (77)
T ss_dssp CCEEEESCCSSCCS---HHHHHHHTTT--SCCCCEEEECCC---------------------------------------
T ss_pred CEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEecCC---------------------------------------
Confidence 37899999998765 7899999987 456666665320
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC-CCCCceeecC
Q 005216 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST-NPTDWLLEQA 328 (708)
Q Consensus 270 ~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~-~p~~~~v~~A 328 (708)
...++.|.|||+|.+.++|..|.+..... +...+.|+.|
T Consensus 37 --------------------~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 37 --------------------LTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp --------------------CSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred --------------------CCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 00123689999999999999999876511 2234455544
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.58 E-value=0.052 Score=46.18 Aligned_cols=78 Identities=13% Similarity=0.218 Sum_probs=55.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ + +.++.+.+|- .
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g-i~~v~i~~~~-----------------------~----------- 51 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQ---GDIDAIFKDL--S-IRSVRLVRDK-----------------------D----------- 51 (103)
T ss_dssp SSSCEEEEEESCCTTCCH---HHHHHHTTTS--C-EEEEEEEECS-----------------------S-----------
T ss_pred CCCCeEEEEeCCCCCCCH---HHHHHHHHhC--C-ceEEEEeecC-----------------------C-----------
Confidence 446789999999998764 7899999987 4 7777776531 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
..+..+.|||+|.+.++|..|. .+... ....+.|+.|-
T Consensus 52 -------------------------~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 52 -------------------------TDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp -------------------------SCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred -------------------------CCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 0112589999999999999998 44432 23445666654
No 59
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.58 E-value=0.058 Score=45.53 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=53.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++.++.|.++.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~g~g~v~~~~~--------------------------------------- 49 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSE---EMIEKEFNNIKPGAVERVKK--------------------------------------- 49 (99)
T ss_dssp SSCCCEEEEESCCTTCCH---HHHHHHHHTTSTTCEEEEEE---------------------------------------
T ss_pred cCCcCEEEEeCCCCCCCH---HHHHHHHHhcCCcceEEEEE---------------------------------------
Confidence 446789999999997764 78999999886655543311
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
..+.|||+|.+..+|..|.+.++.. ....+.|+.|
T Consensus 50 ----------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 50 ----------------------------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp ----------------------------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ----------------------------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 0259999999999999999876643 2344556655
No 60
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.57 E-value=0.023 Score=47.96 Aligned_cols=38 Identities=24% Similarity=0.196 Sum_probs=29.5
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPN 332 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P~ 332 (708)
.+.|||+|.+.++|+.|.+.+... ....++|+.|-.|.
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 589999999999999999877654 34556777776553
No 61
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=95.57 E-value=0.027 Score=46.33 Aligned_cols=38 Identities=11% Similarity=0.281 Sum_probs=30.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
....+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 45 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSK---KDLKDYFTKF--GEVVDCTIKM 45 (87)
T ss_dssp CSCTTEEEEECCCTTCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEee
Confidence 456789999999997764 7899999887 5677777764
No 62
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=95.57 E-value=0.049 Score=48.23 Aligned_cols=79 Identities=9% Similarity=0.085 Sum_probs=55.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 19 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 58 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLDR----------------------------------- 58 (126)
T ss_dssp CSSSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCBCT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC-----------------------------------
Confidence 446789999999997764 7899999987 456666554320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 59 ------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 59 ------------------------RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp ------------------------TTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred ------------------------CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 001236899999999999999998776542 344556554
No 63
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.55 E-value=0.052 Score=44.92 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=52.5
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 185 PQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 185 ~~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
.....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~~~~~------------------------------------- 42 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTS---QELRSLFERR--GRVIECDVV------------------------------------- 42 (90)
T ss_dssp SSCCSCCEEEESCCTTCCH---HHHHHHHHHH--SCEEEEEEC-------------------------------------
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHcC--CCEEEEEEE-------------------------------------
Confidence 3456789999999997764 7899999987 345554331
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
.+.|||+|.+.++|..|.+.+... +...+.|+.|
T Consensus 43 ------------------------------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 43 ------------------------------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp ------------------------------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ------------------------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 128999999999999999876653 2345566655
No 64
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.53 E-value=0.083 Score=43.66 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=52.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ +.|.++.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~~~-------------------------------------- 41 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATE---QEIRSLFEQY--GKVLECDII-------------------------------------- 41 (90)
T ss_dssp SSCCEEEEEESCCSSCCH---HHHHHHHHTS--SCEEEEEEE--------------------------------------
T ss_pred CCCCeEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEE--------------------------------------
Confidence 356789999999997764 7899999887 345444331
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
.+.|||+|.+.++|..|.+.++.. +...+.|+.|-
T Consensus 42 -----------------------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 42 -----------------------------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp -----------------------------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 158999999999999999876653 23456666653
No 65
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.50 E-value=0.063 Score=45.92 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=56.3
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceE-EEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLS-HTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~-v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
...++|.|.|||.+..+ +.|+++|+++ +.+.+ +.+.+|
T Consensus 13 ~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~v~~~v~i~~~------------------------------------ 51 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSK---EEIVQFFSGL--EIVPNGMTLPVD------------------------------------ 51 (104)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHTTTC--CEEEEEEECCBC------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCcceeEEEEEC------------------------------------
Confidence 45689999999998764 7899999876 34443 333321
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCCCCcccC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYWP 337 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P~DIiW~ 337 (708)
...+..|.|||+|.+.++|..|.+. .... ...+.|..| .+.++.|.
T Consensus 52 ------------------------~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~~ 99 (104)
T 1wg5_A 52 ------------------------FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRTS 99 (104)
T ss_dssp ------------------------SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCCS
T ss_pred ------------------------CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHHh
Confidence 0012368999999999999999886 3322 234556555 35565544
No 66
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.50 E-value=0.042 Score=47.55 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=55.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 26 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 65 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFNE----------------------------------- 65 (109)
T ss_dssp TTCCCEEEEESCCTTCCH---HHHHHHGGGT--CCCSCEEECCBT-----------------------------------
T ss_pred CCCCCEEEEECCCCcCCH---HHHHHHHHhc--CCEEEEEEEECC-----------------------------------
Confidence 446789999999998764 7899999987 456665554210
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
.+ ..|.|||+|.+.++|..|.+.+... +...+.|+.|
T Consensus 66 ------------------------~~--~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 66 ------------------------RG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp ------------------------TB--CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ------------------------CC--CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 01 2589999999999999999876654 2344566655
No 67
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.48 E-value=0.039 Score=49.70 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=49.7
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|-
T Consensus 61 ~~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i~~~~------------------------------------ 99 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPLDY------------------------------------ 99 (140)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEECCCCT------------------------------------
T ss_pred CCCcEEEEEeCCCCCCH---HHHHHHHHhc--CCEEEEEEeecC------------------------------------
Confidence 45689999999997764 7899999987 456665553320
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~ 317 (708)
...+..|.|||+|.+.++|..|.+.+..
T Consensus 100 -----------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 100 -----------------------ETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp -----------------------TTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred -----------------------CCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 0012368999999999999999987654
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.48 E-value=0.039 Score=46.47 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=55.8
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|..
T Consensus 3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~----------------------------------- 42 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTE---ETLKGVFSKV--GAIKSCTISKKKN----------------------------------- 42 (98)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEEEC-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-----------------------------------
Confidence 35689999999997764 7899999987 4577777664310
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
. ... .+..+.|||+|.+.++|..|.+.+.... ...+.|+.|
T Consensus 43 -------------------~-~gt-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 43 -------------------K-AGV-LLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp -------------------T-TCC-EEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred -------------------C-CCC-cCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 0 000 0125899999999999999999765432 234555544
No 69
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=95.47 E-value=0.053 Score=48.54 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=57.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 43 ~~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~----------------------------------- 82 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYDQ----------------------------------- 82 (129)
T ss_dssp CCCSSCBCEETCTTSCCH---HHHHHHHTTT--SCEEEEEEECCS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC-----------------------------------
Confidence 345689999999998764 7899999987 457777665431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..+.|||+|.+.++|..|.+.+.... ...+.|+.|
T Consensus 83 ------------------------~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 83 ------------------------QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp ------------------------SSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred ------------------------CCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 001136899999999999999998776543 345566655
No 70
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.47 E-value=0.064 Score=44.58 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=51.9
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 185 PQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 185 ~~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
.....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~v~~~------------------------------------- 43 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTN---QELRAKFEEY--GPVIECDIV------------------------------------- 43 (92)
T ss_dssp CCCSSEEEEEESCCSSCCH---HHHHHHHHTT--SCCCEEEEC-------------------------------------
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEE-------------------------------------
Confidence 3456789999999997764 7899999887 345544331
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
.+.|||+|++.++|..|.+.+... ....+.|+.|
T Consensus 44 ------------------------------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 44 ------------------------------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp ------------------------------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred ------------------------------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 128999999999999999876543 2344556655
No 71
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.44 E-value=0.086 Score=45.31 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=53.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...+||.|.|||.+.++ +.|+++|+++ +.|.++.+.. +
T Consensus 20 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~~~i~~------------------------------------~- 57 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRT---KDIEDVFYKY--GAIRDIDLKN------------------------------------R- 57 (109)
T ss_dssp CCSSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEECC------------------------------------S-
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE------------------------------------C-
Confidence 45689999999997764 7899999987 4555544411 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
.+..+.|||+|++.++|..|.+.++.. +...+.|+.|
T Consensus 58 -------------------------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 58 -------------------------RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp -------------------------SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred -------------------------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 002589999999999999999876653 2334556555
No 72
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.43 E-value=0.055 Score=46.60 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=53.3
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...++|.|.|||.+.++ +.|+++|+++ +.|.++.+.+ |
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~~i~~------------------------------------~- 50 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSW---QDLKDHMREA--GDVCYADVYR------------------------------------D- 50 (108)
T ss_dssp SCCCEEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEET------------------------------------T-
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEec------------------------------------C-
Confidence 45789999999997764 7899999987 4565554431 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--C-----CCceeecCC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--P-----TDWLLEQAP 329 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p-----~~~~v~~AP 329 (708)
+.|||+|.+.++|+.|.+.+.... . ..+.|+.|-
T Consensus 51 -----------------------------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 51 -----------------------------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp -----------------------------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred -----------------------------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 799999999999999999776432 1 446666653
No 73
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=95.42 E-value=0.028 Score=46.54 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=53.0
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHH
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~ 269 (708)
+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|-
T Consensus 2 ~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~--------------------------------------- 37 (90)
T 2ki2_A 2 RNIYVGNLVYSATS---EQVKELFSQF--GKVFNVKLIYDR--------------------------------------- 37 (90)
T ss_dssp EEEEEEEECTTSSH---HHHTTTHHHH--TCCSEEEECCCS---------------------------------------
T ss_pred cEEEECCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEcC---------------------------------------
Confidence 68999999997764 7889999987 456666665321
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCC
Q 005216 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEP 331 (708)
Q Consensus 270 ~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P 331 (708)
...+..|.|||+|.+.+ |..|.+.+.... ...+.|+.|..+
T Consensus 38 --------------------~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 38 --------------------ETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp --------------------SSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred --------------------CCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 00113689999999999 999988766542 345667766433
No 74
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.41 E-value=0.038 Score=47.40 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
....+||.|.|+|.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te---~~L~~~F~~~--G~v~~v~i~~ 45 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRR 45 (103)
T ss_dssp CSGGGCEEEECCCTTCCH---HHHHHHHHTS--SCEEEEEEEC
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHhhc--CCEEEEEEEE
Confidence 345789999999998764 7899999987 5677777764
No 75
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.39 E-value=0.061 Score=50.04 Aligned_cols=103 Identities=16% Similarity=0.244 Sum_probs=69.1
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
.++||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|.. +.
T Consensus 2 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~-----------------------------~~----- 42 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSE---KDLRELFEQY--GAVYEINVLRDRS-----------------------------QN----- 42 (175)
T ss_dssp CCEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEECS-----------------------------SS-----
T ss_pred CceEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEecCC-----------------------------CC-----
Confidence 4689999999998764 7899999987 4577777765310 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC-----CCCceeecCC-------CCCCcc
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN-----PTDWLLEQAP-------EPNDVY 335 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~-----p~~~~v~~AP-------~P~DIi 335 (708)
..+..|.|||+|.+.++|..|.+.+.... ...+.+..+. +...|.
T Consensus 43 -----------------------~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 99 (175)
T 3nmr_A 43 -----------------------PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLF 99 (175)
T ss_dssp -----------------------SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEE
T ss_pred -----------------------CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEE
Confidence 01236899999999999999998765432 2233333322 334577
Q ss_pred cCccccchHHHHHHHHH
Q 005216 336 WPFFSASFMRRWISKIV 352 (708)
Q Consensus 336 W~NL~~~~~~r~~R~~~ 352 (708)
=.||..+..+..++.++
T Consensus 100 v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 100 IGMISKKCTENDIRVMF 116 (175)
T ss_dssp EESCCTTCCHHHHHHHH
T ss_pred EcCCCCcCCHHHHHHHH
Confidence 77887766666666544
No 76
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.39 E-value=0.062 Score=46.57 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=50.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ +.|.++.+.+|-
T Consensus 12 ~~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~~~----------------------------------- 51 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGW---KKLKEVFSMA--GVVVRADILEDK----------------------------------- 51 (114)
T ss_dssp CCCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC-----------------------------------
Confidence 345689999999997764 7899999987 467766665420
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~ 317 (708)
. .+..+.|||+|.+.++|..|.+.+..
T Consensus 52 ------------------------~-g~~~g~afV~f~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 52 ------------------------D-GKSRGIGTVTFEQSIEAVQAISMFNG 78 (114)
T ss_dssp ------------------------T-CSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------------------C-CCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 0 11258999999999999999987654
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.33 E-value=0.07 Score=46.18 Aligned_cols=34 Identities=18% Similarity=0.072 Sum_probs=26.0
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
.+.|||+|.+.++|..|.+.+... ....++|+.|
T Consensus 65 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 65 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp CSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 689999999999999999876543 2344556655
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.27 E-value=0.054 Score=44.17 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=50.7
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|- +
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~----------------------------------~- 42 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTD---QDLVKLCQPY--GKIVSTKAILDK----------------------------------T- 42 (85)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHTTSTTT--SCEEEEEEECCS----------------------------------S-
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC----------------------------------C-
Confidence 34679999999997764 7899999987 567777665421 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
..+..|.|||+|.+.++|..|.+.+...
T Consensus 43 ------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (85)
T 1x4e_A 43 ------------------------TNKCKGYGFVDFDSPSAAQKAVTALKAS 70 (85)
T ss_dssp ------------------------SCSCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred ------------------------CCCcCcEEEEEECCHHHHHHHHHHhcCC
Confidence 0123689999999999999999876543
No 79
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=95.24 E-value=0.025 Score=46.73 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=29.1
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P 331 (708)
.|.|||+|.+.++|..|.+.+... ....++|+.||..
T Consensus 40 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 479999999999999999977654 3455678888653
No 80
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.23 E-value=0.07 Score=43.45 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=27.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEE
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTV 226 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 226 (708)
....+||.|.|||.+.++ +.|+++|+++ |.+.++.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~---~~l~~~f~~~--G~i~~~~~ 44 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITE---TDLRNHFYQF--GEIRTITV 44 (85)
T ss_dssp CSSCCCEEEECCTTTSCH---HHHHHHHHTT--SCEEEEEE
T ss_pred CCCccEEEEcCCCCCCCH---HHHHHHHHhC--CCEeEEEE
Confidence 456789999999997663 7899999887 44655544
No 81
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=95.21 E-value=0.071 Score=45.52 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=53.7
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 185 PQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 185 ~~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
..+.+++|.|+|+|.+..+ +.|++.|+++ |.|.++.+.+
T Consensus 17 ~~~ps~~l~V~NLp~~~te---~~L~~lF~~f--G~V~~v~i~~------------------------------------ 55 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVE---ADLVEALQEF--GPISYVVVMP------------------------------------ 55 (100)
T ss_dssp CCCCCSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEET------------------------------------
T ss_pred cCCCCcEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEEEEc------------------------------------
Confidence 4566789999999987664 7899999987 5666654420
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC----CCCceeecC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN----PTDWLLEQA 328 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~----p~~~~v~~A 328 (708)
. .|.|||.|.+.++|..|.+.+.... ...+.|+.|
T Consensus 56 ---------------------------~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 56 ---------------------------K--KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp ---------------------------T--TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred ---------------------------C--CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 0 2699999999999999988765432 334555544
No 82
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.20 E-value=0.1 Score=45.20 Aligned_cols=67 Identities=13% Similarity=0.269 Sum_probs=50.8
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
....+|.|.|||.+.++ +.|+++|+++ |.+.++.+.+|. +
T Consensus 23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~~----------------------------------~- 62 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDE---QELENMLKPF--GQVISTRILRDS----------------------------------S- 62 (114)
T ss_dssp CCTTEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEEECS----------------------------------S-
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEECC----------------------------------C-
Confidence 45689999999997764 7899999887 457776665420 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
.+..+.|||+|.+..+|..|.+.+...
T Consensus 63 -------------------------g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 63 -------------------------GTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp -------------------------SCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred -------------------------CCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 112589999999999999999976643
No 83
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.20 E-value=0.09 Score=45.24 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=54.8
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+..+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+ |
T Consensus 22 ~~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~------------------------------------~ 60 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTD---QLMRQTFSPF--GQIMEIRVFP------------------------------------E 60 (109)
T ss_dssp CSSCCEEEEECCSSCCCH---HHHHHHHHHH--SCEEEEEEET------------------------------------T
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeC------------------------------------C
Confidence 345789999999997764 7899999987 4566655531 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~ 330 (708)
.+.|||+|.+..+|..|.+.+... ....+.|+.|-+
T Consensus 61 -----------------------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 61 -----------------------------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp -----------------------------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 279999999999999999876553 234456666543
No 84
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.069 Score=49.09 Aligned_cols=97 Identities=10% Similarity=0.130 Sum_probs=62.9
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHH
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~ 269 (708)
+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|-
T Consensus 1 R~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~--------------------------------------- 36 (166)
T 3md3_A 1 RVLYVGNLDKAITE---DILKQYFQVG--GPIANIKIMIDK--------------------------------------- 36 (166)
T ss_dssp CEEEEEEEETTCCH---HHHHHHHGGG--SCEEEEEEECCC---------------------------------------
T ss_pred CEEEECCCCCcCCH---HHHHHHHHhc--CCeEEEEEEECC---------------------------------------
Confidence 68999999998764 7899999987 457777665320
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC--------CCCCcccCcc
Q 005216 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP--------EPNDVYWPFF 339 (708)
Q Consensus 270 ~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP--------~P~DIiW~NL 339 (708)
..+..|.|||+|.+.++|..|.+.+.... ...+.++.|. +...+.=.||
T Consensus 37 ---------------------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl 95 (166)
T 3md3_A 37 ---------------------NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDL 95 (166)
T ss_dssp ---------------------C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESC
T ss_pred ---------------------CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCC
Confidence 01125899999999999999997765432 2234444332 2223555566
Q ss_pred ccchHHHHHHHH
Q 005216 340 SASFMRRWISKI 351 (708)
Q Consensus 340 ~~~~~~r~~R~~ 351 (708)
.....+..++.+
T Consensus 96 ~~~~t~~~l~~~ 107 (166)
T 3md3_A 96 NVNVDDETLRNA 107 (166)
T ss_dssp CTTCCHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 655445444443
No 85
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.19 E-value=0.044 Score=47.51 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=57.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHH---HHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVE---NFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQR 262 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~---~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~ 262 (708)
.....+|.|.|||.+.++ +.|+ ++|+++ |.|.++.+.+|.. . +
T Consensus 12 ~~~~~~l~V~nLp~~~~~---~~l~~~~~~F~~~--G~i~~v~i~~~~~----------------------~------~- 57 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLAD---PEVLKRPEYFGKF--GKIHKVVINNSTS----------------------Y------A- 57 (111)
T ss_dssp CCCSSCEEEEEECTTTCC---HHHHHSTTTTTTT--SCEEEEEEECCSS----------------------C------C-
T ss_pred ccCCCEEEEECCCCCCCH---HHHHHHHHHhhcc--CCEEEEEEecCCC----------------------c------C-
Confidence 345689999999998775 6777 899887 5677777754310 0 0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 263 KVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 263 kvd~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
...+..|.|||+|.+.++|+.|.+.+... ....++|+.|-
T Consensus 58 ---------------------------~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 58 ---------------------------GSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp ---------------------------SSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred ---------------------------ccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 00113689999999999999999976654 23455666653
No 86
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.18 E-value=0.11 Score=44.64 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=53.3
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+..++|.|.|||.+..+ +.|+++|+++ |.|.++.+.+ +
T Consensus 12 ~~p~~~l~V~nLp~~~te---~~L~~~F~~f--G~V~~v~i~~------------------------------------~ 50 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVE---ADLVEALEKF--GTICYVMMMP------------------------------------F 50 (104)
T ss_dssp CCCCSEEEEESCCSSCCH---HHHHHHHTTT--SCEEEEEEET------------------------------------T
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEC------------------------------------C
Confidence 445689999999997764 7899999987 5566654421 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC----CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST----NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~----~p~~~~v~~AP 329 (708)
.+.|||+|++.++|..|.+.+... +...+.|+.|-
T Consensus 51 -----------------------------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 51 -----------------------------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp -----------------------------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 269999999999999998865432 23455666653
No 87
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.16 E-value=0.091 Score=45.83 Aligned_cols=80 Identities=9% Similarity=0.067 Sum_probs=58.0
Q ss_pred CcceEEEEeccCCC-CCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 187 PHQFTVLVRSIPVS-AGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 187 ~~~~TVlv~~IP~~-~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
...++|.|.|||.+ .++ +.|+++|+++ |.|.++.+.+
T Consensus 23 ~p~~~l~V~NLp~~~~te---~~L~~lF~~f--G~V~~v~i~~------------------------------------- 60 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSD---SAVLKLAEPY--GKIKNYILMR------------------------------------- 60 (112)
T ss_dssp CCCCEEEEESCCCSSCCS---HHHHTTTTTT--SCCSEEEEET-------------------------------------
T ss_pred CCCCEEEEeCCCCccCCH---HHHHHHHHhc--CCEEEEEEec-------------------------------------
Confidence 45689999999997 665 7899999887 4566654420
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC----CCCCceeecCCCCCCccc
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST----NPTDWLLEQAPEPNDVYW 336 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~----~p~~~~v~~AP~P~DIiW 336 (708)
..+.|||+|.+.++|..|.+.+... ....+.|+.|-...++.+
T Consensus 61 ----------------------------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~~ 107 (112)
T 1x4f_A 61 ----------------------------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVS 107 (112)
T ss_dssp ----------------------------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSSC
T ss_pred ----------------------------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccccccc
Confidence 0279999999999999998876432 345677777765555543
No 88
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.14 E-value=0.079 Score=45.65 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=54.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+...+|.|.|||.+.++ +.|+++|+++ |.|.++.+.+ |
T Consensus 13 ~~~~~~LfV~nLp~~vte---~dL~~lF~~f--G~V~~v~i~~------------------------------------~ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLK------------------------------------G 51 (105)
T ss_dssp CCCCCEEEECSCCTTSCH---HHHHHHHHHH--CCEEEEEEET------------------------------------T
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEc------------------------------------C
Confidence 345789999999998764 7899999988 5677665531 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC----CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST----NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~----~p~~~~v~~AP 329 (708)
.|.|||+|.+.++|..|.+.+... ....+.|+.|.
T Consensus 52 -----------------------------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 -----------------------------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp -----------------------------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 279999999999999999865432 23445566553
No 89
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=95.12 E-value=0.017 Score=52.39 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=54.5
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCC-cceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPT-TYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
...++|.|.|||.+.++ +.|+++|+++.+. .+.++.+++|-
T Consensus 42 ~~~~~lfVgnLp~~~te---~dL~~~F~~~G~v~~v~~v~i~~d~----------------------------------- 83 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSV---EDVQNFLSDCTIHDGAAGVHFIYTR----------------------------------- 83 (136)
T ss_dssp CTTCEEEEESCCTTCCH---HHHHHHTTTCCCSSSSTTEEEEECS-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcCceeEEEEEECC-----------------------------------
Confidence 45689999999998764 7899999987431 15566666431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
. .++.|.|||+|++.++|..|.+ +... ....+.|..|
T Consensus 84 ------------------------~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 84 ------------------------E-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp ------------------------S-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred ------------------------C-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 0 1136899999999999999988 4432 2334556555
No 90
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=95.12 E-value=0.079 Score=50.25 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=60.5
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
....||.|.|||.+..+ +.|+++|+++ |.|.++.+.+|-
T Consensus 86 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~------------------------------------ 124 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVDYDR------------------------------------ 124 (177)
T ss_dssp TTCEEEEEECCCSCCCH---HHHHHHHHHT--SCCSEEEECCCT------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC------------------------------------
Confidence 45689999999997764 7899999987 456666664320
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCCCCccc
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYW 336 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P~DIiW 336 (708)
..+..+.|||+|.+..+|..|.+.+... +...+.|+.|..+....|
T Consensus 125 ------------------------~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~~~ 172 (177)
T 2f3j_A 125 ------------------------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLEH 172 (177)
T ss_dssp ------------------------TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGGCC
T ss_pred ------------------------CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 0113689999999999999999877654 235567777765444333
No 91
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=95.10 E-value=0.032 Score=46.64 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=25.3
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
.+.|||+|.+.++|..|.+.++... ...++|+.|
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 5899999999999999998765442 334455544
No 92
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=95.10 E-value=0.075 Score=46.39 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=45.7
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
..++|.|.|||.+.++ +.|+++|+++ +.|.++.+.. |
T Consensus 15 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~~~i~~------------------------------------~-- 51 (115)
T 3beg_B 15 SENRVVVSGLPPSGSW---QDLKDHMREA--GDVCYADVYR------------------------------------D-- 51 (115)
T ss_dssp --CCEEEEECCSSCCT---THHHHHHGGG--SCEEEEEECT------------------------------------T--
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEec------------------------------------C--
Confidence 4689999999997765 6789999887 4565554421 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
+.|||+|.+.++|+.|.+.+...
T Consensus 52 ----------------------------g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 52 ----------------------------GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp ----------------------------SEEEEEESSHHHHHHHHHHHTTC
T ss_pred ----------------------------CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999977654
No 93
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=95.10 E-value=0.073 Score=45.74 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=27.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCC-CcceEEEEE
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHP-TTYLSHTVI 227 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p-~~v~~v~i~ 227 (708)
....++|.|.|||.+..+ +.|+++|+++.+ +.|.++.+.
T Consensus 8 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~g~~~~v~~v~i~ 47 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTM---EDVLNFFSDCRIRNGENGIHFL 47 (107)
T ss_dssp CSSCCEEEEECCCSSCCS---HHHHHHTTTSCBTTTTTTEECC
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHhcCCcCCcceEEEE
Confidence 346789999999998775 789999987632 124444443
No 94
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=95.10 E-value=0.025 Score=48.09 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=54.9
Q ss_pred cceEEEEeccCCCCC---CchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 188 HQFTVLVRSIPVSAG---STIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~---~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
.+.||.|.|||...+ +...+.|+++|+++ |.|.++.+.+|-
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~---------------------------------- 48 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDE---------------------------------- 48 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEET----------------------------------
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcC----------------------------------
Confidence 357999999998211 12357889999887 467766665431
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--C-CCceeecC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--P-TDWLLEQA 328 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p-~~~~v~~A 328 (708)
...++.|.|||+|.+..+|+.|.+.+.... . ..+.|+.|
T Consensus 49 -------------------------~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 49 -------------------------ATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp -------------------------TTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred -------------------------CCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 001126899999999999999998776543 2 45666665
No 95
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=95.08 E-value=0.069 Score=46.06 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=27.0
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~ 330 (708)
.+.|||+|.+..+|+.|.+.+... +...+.|+.|-+
T Consensus 62 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 62 KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 479999999999999999876654 234566776643
No 96
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.08 E-value=0.054 Score=43.01 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=22.9
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEE
Q 005216 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTV 226 (708)
Q Consensus 191 TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 226 (708)
+|.|.|||.+.++ +.|+++|++. |.+.++.+
T Consensus 1 ~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i 31 (75)
T 2mss_A 1 KIFVGGLSVNTTV---EDVKHYFEQF--GKVDDAML 31 (75)
T ss_dssp CEEEECCCSSCCH---HHHHHHHHTT--SCCSEECC
T ss_pred CEEEecCCCCCCH---HHHHHHHHhc--CCEEEEEE
Confidence 4789999997764 7899999887 44555443
No 97
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.05 E-value=0.096 Score=43.97 Aligned_cols=77 Identities=17% Similarity=0.090 Sum_probs=54.0
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHH----HHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 005216 185 PQPHQFTVLVRSIPVSAGSTIGDTVE----NFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQ 260 (708)
Q Consensus 185 ~~~~~~TVlv~~IP~~~~~~~~~~l~----~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~ 260 (708)
......+|.|.|||.+.++ +.|+ ++|+++ |.|.++.+.+|-
T Consensus 5 ~~~~~~~l~V~nL~~~~~~---~~l~~~l~~~F~~~--G~v~~v~i~~~~------------------------------ 49 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSR---KELQQLLQEAFARH--GKVKSVELSPHT------------------------------ 49 (96)
T ss_dssp CCSSCEEEEEESCCTTSCH---HHHHHHHHHHHHHH--SCEEEEEECSCC------------------------------
T ss_pred CCCCCCEEEEECCCCCCCH---HHHHHHHHHhcccc--CcEEEEEEEeCC------------------------------
Confidence 3456689999999987653 4555 899887 457766664320
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 261 QRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 261 g~kvd~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
+ . .+.|||+|.+.++|+.|.+.+... ....++|+.|
T Consensus 50 ----~--------------------------~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 50 ----D--------------------------Y--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp ----S--------------------------T--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred ----C--------------------------C--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 0 0 258999999999999999877643 2345666665
No 98
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.05 E-value=0.13 Score=42.92 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=55.1
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEE-EEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSH-TVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v-~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
...++|.|.|||.+.++ +.|+++|+++ |.+.++ .+.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~~~~i~~~------------------------------------ 51 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQW---EVLDSLLVQY--GVVESCEQVNTD------------------------------------ 51 (96)
T ss_dssp CSCCCEEEEEECSSSCH---HHHHHHHHHH--SCEEEEEEECCS------------------------------------
T ss_pred CCCCEEEEEcCCCCCCH---HHHHHHHHhc--CCeEEEEEeecC------------------------------------
Confidence 34689999999997764 7899999887 445555 23221
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P 331 (708)
+.++.|||+|.+..+|..|.+.+... +...+.|+.|.+.
T Consensus 52 ---------------------------~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 52 ---------------------------SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp ---------------------------SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred ---------------------------CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 01334999999999999999876654 3456778877644
No 99
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.04 E-value=0.06 Score=45.63 Aligned_cols=79 Identities=10% Similarity=0.204 Sum_probs=52.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ | +.++.+.+|-+
T Consensus 16 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G-i~~v~i~~~~~---------------------------------- 55 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPREPS---------------------------------- 55 (100)
T ss_dssp ----CEEEESCCSSCCSS---SHHHHHSCSS--C-EEEEECSCCTT----------------------------------
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEEEecCC----------------------------------
Confidence 346799999999997765 6789999887 4 77666543200
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP 329 (708)
...+..|.|||+|.+.++|..|. .+.... ...+.|+.|-
T Consensus 56 ------------------------~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 56 ------------------------NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp ------------------------TTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred ------------------------cCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 00123689999999999999999 554432 3445666653
No 100
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.03 E-value=0.033 Score=49.60 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=29.5
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCC--CcceEEEEEc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHP--TTYLSHTVIH 228 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p--~~v~~v~i~~ 228 (708)
...++|.|.|||.+.++ +.|+++|+++.+ +.+.+|.+++
T Consensus 21 ~~~~~v~V~nLp~~~te---~dl~~~F~~~g~v~g~v~~v~i~~ 61 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATA---EEVVAFFGQHCPITGGKEGILFVT 61 (123)
T ss_dssp CSCCEEEECSCCTTCCH---HHHHHHHHTTSCCTTGGGGEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCccCCcceEEEEE
Confidence 34689999999998764 889999998754 3355666654
No 101
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.95 E-value=0.11 Score=43.57 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=53.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+...+|.|.|||.+.++ +.|+++|+++ +.|.++.+..
T Consensus 14 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~~~~------------------------------------- 51 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSL---AALAREFDRF--GSIRTIDHVK------------------------------------- 51 (97)
T ss_dssp CCCCSCEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEECS-------------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEeC-------------------------------------
Confidence 345689999999997764 7899999887 3455443210
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--C--CCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--N--PTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~--p~~~~v~~A 328 (708)
. .+.|||+|.+.++|+.|.+.++.. . ...+.|+.|
T Consensus 52 --------------------------~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 52 --------------------------G--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp --------------------------S--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred --------------------------C--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 0 369999999999999999876643 2 355677766
No 102
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=94.85 E-value=0.075 Score=49.29 Aligned_cols=79 Identities=9% Similarity=-0.013 Sum_probs=57.2
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
..++|.|.|||.+.++ +.|+++|+++.+..+.++.+++|-.
T Consensus 54 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~d~~------------------------------------ 94 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAENRA------------------------------------ 94 (156)
T ss_dssp --CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEECTT------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEecCC------------------------------------
Confidence 4589999999998764 7899999988543677877765410
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
..+..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 95 -----------------------tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 95 -----------------------NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -----------------------TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred -----------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 01125899999999999999999876542 344566665
No 103
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.84 E-value=0.06 Score=46.73 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=52.8
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
+.+||.|.|||.+..+ +.|+++|+++ |.+.++.+..
T Consensus 9 ~~~~l~V~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~--------------------------------------- 44 (111)
T 1whx_A 9 SKTVILAKNLPAGTLA---AEIQETFSRF--GSLGRVLLPE--------------------------------------- 44 (111)
T ss_dssp EEEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCS---------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEeC---------------------------------------
Confidence 4689999999997653 7899999887 4454433210
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~ 330 (708)
..+.|||+|.+..+|..|.+.++.. ....+.|+.|+.
T Consensus 45 --------------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 45 --------------------------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp --------------------------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred --------------------------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 1367999999999999999887654 234566776653
No 104
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=94.84 E-value=0.14 Score=43.84 Aligned_cols=81 Identities=10% Similarity=0.136 Sum_probs=56.7
Q ss_pred cceEEEEeccCCCCCCc---hHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 188 HQFTVLVRSIPVSAGST---IGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~---~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
..+||.|.|||.+.++. ..+.|+++|+++ |.|.++.+.++
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~~~----------------------------------- 56 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEE----------------------------------- 56 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECCCB-----------------------------------
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEeeCC-----------------------------------
Confidence 35799999999966543 467899999987 44655433210
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCC-CceeecCCCC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPT-DWLLEQAPEP 331 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~-~~~v~~AP~P 331 (708)
. .++.|.|||+|.+..+|+.|.+.+... ... .+.|+.|-+-
T Consensus 57 -------------------------~-g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 57 -------------------------D-GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp -------------------------T-TBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred -------------------------C-CCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 0 113589999999999999999987654 233 5777777543
No 105
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=94.81 E-value=0.096 Score=47.18 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=55.8
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
..+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 41 ~~~~l~V~nLp~~~~~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------- 78 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDE---VQLRQLFERY--GPIESVKIVCDR------------------------------------- 78 (139)
T ss_dssp TTSEEEEESCSTTCCH---HHHHHHHHHH--SCEEEEEEEEET-------------------------------------
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC-------------------------------------
Confidence 4589999999997764 7899999988 567777765431
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
...+..+.|||+|.+.++|..|.+.+... ....++|+.|
T Consensus 79 ----------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 79 ----------------------ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp ----------------------TTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred ----------------------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 00112589999999999999999876653 2344556555
No 106
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=94.80 E-value=0.12 Score=43.65 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=49.7
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHHH
Q 005216 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHY 270 (708)
Q Consensus 191 TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~~ 270 (708)
||.|.|||.+.++ +.|+++|+++ |.+.++.+.+ |
T Consensus 2 ~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~------------------------------------~----- 35 (101)
T 2hvz_A 2 KVYVGNLGTGAGK---GELERAFSYY--GPLRTVWIAR------------------------------------N----- 35 (101)
T ss_dssp EEEEECCCSSCSH---HHHHHHHHHH--CCCSEEEEES------------------------------------S-----
T ss_pred EEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEee------------------------------------C-----
Confidence 7899999997664 7889999887 4566655542 1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 271 GKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 271 ~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
..+.|||+|.+.++|..|.+.+... +...+.|+.|
T Consensus 36 -----------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 36 -----------------------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp -----------------------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred -----------------------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 1589999999999999998876543 2234555544
No 107
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.79 E-value=0.1 Score=50.87 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=67.7
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
...||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-.
T Consensus 14 p~~tlfVgnLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~------------------------------------ 52 (213)
T 4f02_A 14 PMASLYVGDLHPDVTE---AMLYEKFSPA--GPILSIRVCRDMI------------------------------------ 52 (213)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT------------------------------------
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEecccC------------------------------------
Confidence 4579999999998774 8899999998 5688887765310
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC--------CCCCcccC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP--------EPNDVYWP 337 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP--------~P~DIiW~ 337 (708)
..+..|.|||+|.+..+|..|.+.+.... ...+++..+. ....|.=.
T Consensus 53 -----------------------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~ 109 (213)
T 4f02_A 53 -----------------------TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIK 109 (213)
T ss_dssp -----------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEE
T ss_pred -----------------------CCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceEC
Confidence 01126899999999999999998765432 2223344332 22346666
Q ss_pred ccccchHHHHHHHHH
Q 005216 338 FFSASFMRRWISKIV 352 (708)
Q Consensus 338 NL~~~~~~r~~R~~~ 352 (708)
||..+..+.-++.++
T Consensus 110 nl~~~~t~~~l~~~F 124 (213)
T 4f02_A 110 NLDKSIDNKALYDTF 124 (213)
T ss_dssp SCCTTCCHHHHHHHH
T ss_pred CcccccHHHHHHHHH
Confidence 777665555555543
No 108
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.77 E-value=0.09 Score=46.40 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=53.8
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+...+|.|.|||.+.++ +.|+++|+++ |.|.++.+.+ |
T Consensus 28 ~~ps~~LfVgNLp~~vte---~dL~~lF~~f--G~V~~v~i~~------------------------------------~ 66 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLK------------------------------------G 66 (119)
T ss_dssp SSCCSEEEEESCCTTCCH---HHHHHHHTTT--SCCCEEEEEG------------------------------------G
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEeC------------------------------------C
Confidence 445689999999998764 7899999987 5666665531 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc----CCCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS----TNPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~----~~p~~~~v~~AP 329 (708)
.|.|||+|++.++|..|.+.+.. -....+.|+.|-
T Consensus 67 -----------------------------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 -----------------------------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp -----------------------------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 17999999999999999886542 133456666653
No 109
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=94.76 E-value=0.039 Score=43.84 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=18.3
Q ss_pred CcEEEEEecCHHHHHHHHHh
Q 005216 295 LQAAFVSFKSRYGAAIAFHM 314 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~ 314 (708)
.|.|||+|++.++|..|.+.
T Consensus 41 ~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 41 RGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CCCEEEECSSSHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHh
Confidence 68999999999999999885
No 110
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.75 E-value=0.073 Score=45.46 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=28.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
....++|.|.|||.+.++ +.|+++|+++. ++++.+++
T Consensus 12 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~G---~~~v~i~~ 48 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATE---NDIYNFFSPLN---PMRVHIEI 48 (102)
T ss_dssp CSSSCEEEEESCCTTCCH---HHHHHSSCSCC---CSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHcC---ceEEEEEE
Confidence 345689999999998764 78999998864 23666654
No 111
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=94.74 E-value=0.098 Score=44.47 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=50.5
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...++|.|.|||.+.++ +.|+++|+++ +.|.++.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~i~~v~~~--------------------------------------- 44 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTE---EILEKAFSQF--GKLERVKKL--------------------------------------- 44 (103)
T ss_dssp CCCCCEEEECCCTTCCH---HHHHHHHHHH--SCEEEEEEC---------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEE---------------------------------------
Confidence 34689999999997764 7899999887 345443221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
.+.|||+|.+.++|..|.+.+... +...+.|+.|-
T Consensus 45 ----------------------------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 45 ----------------------------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp ----------------------------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred ----------------------------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 138999999999999999876543 23345565553
No 112
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.74 E-value=0.055 Score=47.13 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=23.1
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhC
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFH 217 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~ 217 (708)
...++|.|.|||.+.++ +.|+++|+++.
T Consensus 6 ~~~~~lfVgnLp~~~te---~~L~~~F~~~G 33 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDE---DEITASFRRFG 33 (114)
T ss_dssp SCCCCEEEECCCTTCCH---HHHHHHTTTTC
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhcC
Confidence 34689999999998764 78999999874
No 113
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.73 E-value=0.2 Score=45.73 Aligned_cols=76 Identities=20% Similarity=0.146 Sum_probs=56.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+ |
T Consensus 70 ~~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~------------------------------------~ 108 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNK---TELERAFGYY--GPLRSVWVAR------------------------------------N 108 (150)
T ss_dssp STTSCEEEEESCCSCCSC---HHHHHHHHHH--SCEEEEEECS------------------------------------S
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEee------------------------------------C
Confidence 345689999999998765 7899999987 4566655531 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPE 330 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~ 330 (708)
+.|.|||+|.+..+|..|.+.++... ...++|+.|-+
T Consensus 109 ----------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 109 ----------------------------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp ----------------------------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred ----------------------------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 14799999999999999998776543 35567776643
No 114
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=94.71 E-value=0.048 Score=45.32 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=26.6
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEE
Q 005216 185 PQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTV 226 (708)
Q Consensus 185 ~~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 226 (708)
..++.+|+.|.|||.+.++ +.|+++|+++ |.|.++.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te---~~L~~~F~~~--G~i~~v~i 43 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTA---EELQQFFCQY--GEVVDVFI 43 (89)
T ss_dssp ----CCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEEE
Confidence 3466789999999998774 7899999987 45665544
No 115
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.68 E-value=0.057 Score=46.11 Aligned_cols=38 Identities=11% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
....++|.|.|||.+.++ +.|+++|+++ +.|.++.+.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~ 50 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQ---ETLRSYFSQY--GEVVDCVIMK 50 (105)
T ss_dssp SSSSSEECCBSCCTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEee
Confidence 446789999999998764 7899999987 5677777664
No 116
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.66 E-value=0.12 Score=44.19 Aligned_cols=74 Identities=9% Similarity=0.102 Sum_probs=52.8
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+...+|.|.|||.+.++ +.|+++|+++ |.|.++.+.+ |
T Consensus 12 ~~p~~~l~V~nLp~~~te---~~L~~~F~~f--G~v~~v~i~~------------------------------------~ 50 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTE---TEVIALGLPF--GKVTNILMLK------------------------------------G 50 (101)
T ss_dssp SSCCSEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEET------------------------------------T
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEC------------------------------------C
Confidence 345689999999987664 7899999887 5566554421 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC----CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST----NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~----~p~~~~v~~AP 329 (708)
.|.|||+|.+.++|..|.+.+... ....+.|+.|-
T Consensus 51 -----------------------------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 -----------------------------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp -----------------------------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 279999999999999998865422 23445666654
No 117
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.64 E-value=0.059 Score=46.77 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=27.4
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
..++|.|.|||.+.++ +.|+++|+.+ .+.++.+++
T Consensus 15 ~~~~v~V~nLp~~~te---~dl~~~F~~~---~v~~v~i~~ 49 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAME---NDVRDFFHGL---RVDAVHLLK 49 (109)
T ss_dssp HHHEEEEECCCSSCCH---HHHHHHTTTS---CCCEEEECC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHhccC---CeeEEEEEE
Confidence 4589999999998764 7899999886 356666654
No 118
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.62 E-value=0.036 Score=45.73 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=25.4
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEE
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHT 225 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~ 225 (708)
..+||.|.|||.+.++ +.|+++|+++ |.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~ 36 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTE---DELREFFSQY--GDVMDVF 36 (88)
T ss_dssp CCCEEEEESCCSSSCH---HHHHHHSTTT--SCCCEEE
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEE
Confidence 4689999999998764 7899999887 4455443
No 119
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.62 E-value=0.15 Score=43.64 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=54.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
+...+||.|.|||.+.++ +.|+++|+++.+ .+.++.+... |
T Consensus 5 s~~~~~l~V~nLp~~~t~---~~l~~~f~~~G~-~v~~v~i~~~-----------------------------------~ 45 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKR---EEILEEIAKVTE-GVLDVIVYAS-----------------------------------A 45 (109)
T ss_dssp CCCSEEEEEECCCTTSCH---HHHHHHHHHHST-TEEEEECCSS-----------------------------------S
T ss_pred ccCCCEEEEeCCCCcCCH---HHHHHHHHHhcC-CceEEEEEcc-----------------------------------C
Confidence 455789999999997664 789999998843 2555544310 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcc--cC--CCCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQ--ST--NPTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~--~~--~p~~~~v~~A 328 (708)
. ...+..+.|||+|.+.++|..|.+.+. .. ....+.|+.|
T Consensus 46 ~-----------------------~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 46 A-----------------------DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp C-----------------------TTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred C-----------------------CCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 0 001136899999999999999998774 22 2345666655
No 120
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=94.59 E-value=0.16 Score=48.99 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=66.0
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
..+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|. .+
T Consensus 27 ~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~---------------------------------~~-- 66 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGE---DTIRQAFAPF--GPIKSIDMSWDS---------------------------------VT-- 66 (216)
T ss_dssp HHTEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEECCC----------------------------------CC--
T ss_pred cCCEEEEECCCCCCCH---HHHHHHHHhC--CCEEEEEEeecC---------------------------------CC--
Confidence 3579999999998764 7899999988 557776665421 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC----------------
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP---------------- 329 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP---------------- 329 (708)
.+..+.|||+|.+.++|..|.+.+.... ...+.+..+.
T Consensus 67 ------------------------g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 122 (216)
T 2qfj_A 67 ------------------------MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEA 122 (216)
T ss_dssp -------------------------CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHH
T ss_pred ------------------------CccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhccc
Confidence 1136899999999999999998765542 2334454332
Q ss_pred -CCCCcccCccccchHHHHHHHHH
Q 005216 330 -EPNDVYWPFFSASFMRRWISKIV 352 (708)
Q Consensus 330 -~P~DIiW~NL~~~~~~r~~R~~~ 352 (708)
...-|+-.||.....+.-++.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f 146 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVF 146 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHH
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHH
Confidence 22456666666555454444443
No 121
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.14 Score=42.97 Aligned_cols=71 Identities=11% Similarity=0.285 Sum_probs=50.7
Q ss_pred CCcceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 186 QPHQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 186 ~~~~~TVlv~~IP~-~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
.+...||.|.|||. +.++ +.|+++|+++ |.|.++.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~---~~l~~~F~~~--G~v~~v~i-------------------------------------- 43 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSK---EDLFRIFSPY--GHIMQINI-------------------------------------- 43 (96)
T ss_dssp --CCEEEEEESSTTSCCCH---HHHHHHHTTT--CCCCEEEE--------------------------------------
T ss_pred CCCCCEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEE--------------------------------------
Confidence 45678999999997 7664 7899999887 34443322
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
. .+.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 44 ---------------------------~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 44 ---------------------------K--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp ---------------------------E--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred ---------------------------e--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 0 2799999999999999998766542 345566655
No 122
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=94.54 E-value=0.15 Score=51.26 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=71.9
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+.+ |.|.++.+.+
T Consensus 19 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~------------------------------------- 56 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITE---EDFKRLFERY--GEPSEVFINR------------------------------------- 56 (261)
T ss_dssp SCGGGEEEEESCCTTCCH---HHHHHHTGGG--CCCSEEEEET-------------------------------------
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEeC-------------------------------------
Confidence 345689999999998764 7899999887 4455544310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCCCCcccCccccch
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYWPFFSASF 343 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P~DIiW~NL~~~~ 343 (708)
..|.|||+|.+..+|..|.+.+... ....+.|+.|.+..-|.=.||....
T Consensus 57 ----------------------------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~ 108 (261)
T 3sde_A 57 ----------------------------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVV 108 (261)
T ss_dssp ----------------------------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTC
T ss_pred ----------------------------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCC
Confidence 0379999999999999998876544 3455778888888888888988776
Q ss_pred HHHHHHHHH
Q 005216 344 MRRWISKIV 352 (708)
Q Consensus 344 ~~r~~R~~~ 352 (708)
.+..++.++
T Consensus 109 t~~~l~~~F 117 (261)
T 3sde_A 109 SNELLEQAF 117 (261)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666655544
No 123
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=94.49 E-value=0.16 Score=43.63 Aligned_cols=84 Identities=10% Similarity=-0.033 Sum_probs=58.8
Q ss_pred CcceEEEEeccCC--CCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 187 PHQFTVLVRSIPV--SAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 187 ~~~~TVlv~~IP~--~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
...++|.+.|+.. +.+++..+.|++.|+++ |.|.++.+.+|-+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~--------------------------------- 50 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPG--------------------------------- 50 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSS---------------------------------
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCC---------------------------------
Confidence 3467999999964 33445678899999988 6788888765310
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~ 330 (708)
...+..|.|||+|.+..+|..|.+.++.. ....+.++.|++
T Consensus 51 -------------------------~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 51 -------------------------APDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp -------------------------CCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred -------------------------CCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 00112689999999999999999988765 334566777753
No 124
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.47 E-value=0.071 Score=46.40 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=28.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcc-eEEEEEc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTY-LSHTVIH 228 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v-~~v~i~~ 228 (708)
....+||.|.|||.+.++ +.|+++|+++ +.+ .++.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g~v~~~v~i~~ 50 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITK---MDVLQFLEGI--PVDENAVHVLV 50 (114)
T ss_dssp CSCCCEEEEESCCTTSCH---HHHHHHTTTS--CCCSTTEEECC
T ss_pred CCCccEEEEeCcCCcCCH---HHHHHHHHhC--CCcCCeEEEEE
Confidence 345789999999998764 7899999887 445 4455543
No 125
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.44 E-value=0.12 Score=43.78 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=27.3
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE 330 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~ 330 (708)
.+.|||+|.+.++|..|.+.+... ....+.|+.|-.
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 589999999999999999876654 234566766643
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=94.43 E-value=0.15 Score=43.86 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=51.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|||.+.++ +.|+++|+++ |.|.++.+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~-------------------------------------- 64 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQE---SELNEIFGPF--GPMKEVKIL-------------------------------------- 64 (108)
T ss_dssp CCSCSEEEECSSCTTCCH---HHHHHHHTTT--SCCCEEEEE--------------------------------------
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEE--------------------------------------
Confidence 345689999999997764 7899999887 344443221
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
.|.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 65 -----------------------------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 65 -----------------------------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp -----------------------------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 279999999999999999876654 2344566655
No 127
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=94.41 E-value=0.14 Score=41.26 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=20.9
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
.|.|||+|.+..+|..|.+.+...
T Consensus 47 ~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 47 KGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEEESSHHHHHHHHTTSSSC
T ss_pred eEEEEEEECCHHHHHHHHHHhcCc
Confidence 589999999999999999876544
No 128
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=94.41 E-value=0.11 Score=45.85 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=54.1
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
.+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|- .
T Consensus 36 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~-----------------------~-------------- 73 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTA---QDLEAHFSSC--GSINRITILCDK-----------------------F-------------- 73 (124)
T ss_dssp HTEEEEEEECTTCCH---HHHHHHHHTT--SCEEEEEEEEEC-----------------------T--------------
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecC-----------------------C--------------
Confidence 579999999997764 7899999987 567777776431 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
..+..|.|||+|.+.++|..|. .+... ....+.|+.|-
T Consensus 74 ----------------------~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 74 ----------------------SGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp ----------------------TSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred ----------------------CCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 0112589999999999999998 44433 23446666653
No 129
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.38 E-value=0.14 Score=47.19 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=55.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 68 ~~~~~l~v~nl~~~~~~---~~l~~~F~~~--G~v~~~~i~~~~------------------------------------ 106 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSP---DTLRRVFEKY--GRVGDVYIPRDR------------------------------------ 106 (158)
T ss_dssp CBCCEEEEESCCTTCCH---HHHHHHHHHH--SCEEEEECCCCS------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeecC------------------------------------
Confidence 45689999999998764 7899999888 456666554320
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
...+..|.|||+|.+..+|..|.+.++.. ....+.|+.|
T Consensus 107 -----------------------~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 107 -----------------------YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp -----------------------SCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred -----------------------CCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 00112689999999999999999876653 2344555554
No 130
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.36 E-value=0.1 Score=44.62 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=54.4
Q ss_pred CcceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 187 PHQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 187 ~~~~TVlv~~IP~-~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
...++|.|.|||. +.+ .+.|+++|+++ |.|.++.+.++
T Consensus 13 ~p~~~l~V~nLp~~~~t---e~dL~~lF~~f--G~V~~v~i~~~------------------------------------ 51 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNL---RYQLLQLVEPF--GVISNHLILNK------------------------------------ 51 (102)
T ss_dssp CCCCEEEEESCCCSSSH---HHHHHTTTGGG--SCEEEEEECSS------------------------------------
T ss_pred CCCCEEEEeCCCCCcCC---HHHHHHHHHhc--CCEEEEEEEcC------------------------------------
Confidence 3568999999998 765 37899999988 56777655310
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC----CCCCceeecCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST----NPTDWLLEQAPE 330 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~----~p~~~~v~~AP~ 330 (708)
.+.|||+|.+.++|..|.+.+... ....+.|+.|-.
T Consensus 52 -----------------------------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 52 -----------------------------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp -----------------------------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred -----------------------------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 157999999999999998876543 234566766653
No 131
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=94.33 E-value=0.085 Score=47.58 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=54.4
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
..+||.|.|||.+.+ .+.|+++|+++ |.|.++.+.+|-
T Consensus 46 ~~~~l~V~nLp~~~t---e~~L~~~F~~~--G~i~~v~i~~~~------------------------------------- 83 (135)
T 2lea_A 46 GMTSLKVDNLTYRTS---PDTLRRVFEKY--GRVGDVYIPRDR------------------------------------- 83 (135)
T ss_dssp GCCCEEEECCCSSCH---HHHHHHHHGGG--SCCSEEECCCCS-------------------------------------
T ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHhc--CCEEEEEEEecC-------------------------------------
Confidence 457999999999765 47899999987 456665554320
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..|.|||+|.+.++|..|.+.+.... ...+.|+.|
T Consensus 84 ----------------------~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 84 ----------------------YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp ----------------------SSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred ----------------------CCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 001236899999999999999998766543 345566655
No 132
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.30 E-value=0.13 Score=44.80 Aligned_cols=75 Identities=11% Similarity=0.217 Sum_probs=53.1
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
.++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 27 ~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~-------------------------------------- 63 (116)
T 1x4b_A 27 FRKLFIGGLSFETTE---ESLRNYYEQW--GKLTDCVVMRDP-------------------------------------- 63 (116)
T ss_dssp HTEEEEECCTTCCCH---HHHHHHHTSS--CCCSEEEEECCT--------------------------------------
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEECC--------------------------------------
Confidence 489999999998764 7899999887 457777665430
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
...+..+.|||+|.+..+|..|.+. ... +...+.|+.|
T Consensus 64 ---------------------~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 64 ---------------------ASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp ---------------------TTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred ---------------------CCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 0012368999999999999999876 322 2234556555
No 133
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=94.27 E-value=0.16 Score=48.16 Aligned_cols=103 Identities=7% Similarity=0.127 Sum_probs=66.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|.
T Consensus 10 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 49 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTD---ESLRSHFEQW--GTLTDCVVMRDP----------------------------------- 49 (196)
T ss_dssp CGGGGEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEEcC-----------------------------------
Confidence 446789999999998764 7899999988 557777766431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC-CCCCceeecCC------------CCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST-NPTDWLLEQAP------------EPN 332 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~-~p~~~~v~~AP------------~P~ 332 (708)
...+..|.|||+|.+.++|..|.+..... ....+.+..|. ...
T Consensus 50 ------------------------~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~ 105 (196)
T 1l3k_A 50 ------------------------NTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 105 (196)
T ss_dssp ------------------------TTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCS
T ss_pred ------------------------CCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcc
Confidence 00112589999999999999998762110 11223333332 224
Q ss_pred CcccCccccchHHHHHHHHH
Q 005216 333 DVYWPFFSASFMRRWISKIV 352 (708)
Q Consensus 333 DIiW~NL~~~~~~r~~R~~~ 352 (708)
.|.=.||.....+..++.++
T Consensus 106 ~l~V~nLp~~~t~~~l~~~F 125 (196)
T 1l3k_A 106 KIFVGGIKEDTEEHHLRDYF 125 (196)
T ss_dssp EEEEECCTTTCCHHHHHHHH
T ss_pred eEEEeCCCCCCCHHHHHHHH
Confidence 56667776665555555544
No 134
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=94.26 E-value=0.073 Score=44.57 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=30.1
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCCCCc
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDV 334 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P~DI 334 (708)
.|.|||+|.+..+|..|.+.++.. ....+.|+.|-.+.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 479999999999999999877654 2345677777555543
No 135
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=94.25 E-value=0.11 Score=45.27 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=53.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+..++|.|.|||.+.++ +.|+++|++..+ .|..+.+.. +
T Consensus 25 p~~~~~l~VgnLp~~~te---~dL~~~F~~~G~-~v~~v~i~~------------------------------------~ 64 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSW---QDLKDLARENSL-ETTFSSVNT------------------------------------R 64 (111)
T ss_dssp CCCCEEEEEECSSCCCCH---HHHHHHHHHHTC-CCSEEECSS------------------------------------C
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHHhCC-eeEEEEEEc------------------------------------C
Confidence 345789999999998764 789999998842 343322200 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
+..|.|||+|.+.++|..|.+.+... +...+.|+.|.
T Consensus 65 ---------------------------~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 65 ---------------------------DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp ---------------------------SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred ---------------------------CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 02589999999999999999877543 23456676663
No 136
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=94.24 E-value=0.16 Score=47.34 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=55.8
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+||.|.|||.+..+ +.|+++|+++ |.|..+.+..+-
T Consensus 69 ~~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~~~~----------------------------------- 108 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLDR----------------------------------- 108 (165)
T ss_dssp CC-CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHhhcC--CCEEEEEEEecC-----------------------------------
Confidence 445689999999997663 7899999988 567777775431
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
...+..|.|||+|.+..+|..|.+.+... ....+.|..|
T Consensus 109 ------------------------~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 109 ------------------------RTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp ------------------------TTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ------------------------CCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 00112589999999999999999877653 2334555544
No 137
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.18 E-value=0.27 Score=41.13 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=28.6
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P 331 (708)
.+.|||+|.+..+|..|.+.+... ....+.|+.|-++
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 56 RRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 589999999999999999877654 3456777776443
No 138
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.17 Score=42.70 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=25.4
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEE
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSH 224 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 224 (708)
.+..+||.|.|||.+.++ +.|+++|+++ |.|.++
T Consensus 24 ~~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~ 57 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATE---ADLIPLFQNF--GFILDF 57 (101)
T ss_dssp CSSCCEEEEESCCTTCCH---HHHHHHHHTT--SCCSEE
T ss_pred CCCCCEEEEcCCCcccCH---HHHHHHHHhC--CCEEEE
Confidence 345689999999997764 7899999887 444443
No 139
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=94.14 E-value=0.1 Score=46.59 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=48.4
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceE--EEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLS--HTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~--v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
....||.|.|||.+.++ +.|+++|+++. .|.. |.+++|-
T Consensus 21 ~~~~~lfV~nL~~~~te---~~L~~~F~~~G--~v~~~~v~i~~d~---------------------------------- 61 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTM---DSILGALAPYA--VLSSSNVRVIKDK---------------------------------- 61 (131)
T ss_dssp CCCCEEEECSCCTTCCS---HHHHHHHGGGC--CCCTTTEECCBCS----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhC--CcceeeEEEEEcC----------------------------------
Confidence 34679999999998775 78999999873 4432 4444320
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
...+..|.|||+|.+. +|..|.+.+...
T Consensus 62 -------------------------~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 62 -------------------------QTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp -------------------------SSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred -------------------------CCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 0012368999999999 999998887765
No 140
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.00 E-value=0.077 Score=46.58 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=28.8
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCC-cceEEEEEc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPT-TYLSHTVIH 228 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~~ 228 (708)
...+||.|.|||.+..+ +.|+++|+++.+. .|.++.+++
T Consensus 15 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~~~~v~~v~i~~ 54 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSI---EDVQNFLSDCTIHDGVAGVHFIY 54 (118)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHTTTSCBTTGGGGEEEEE
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCCccCceeEEEEE
Confidence 35689999999998764 7899999887431 256666654
No 141
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=94.00 E-value=0.11 Score=44.72 Aligned_cols=78 Identities=10% Similarity=0.224 Sum_probs=53.0
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|-
T Consensus 23 ~~~~~lfV~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~~~------------------------------------ 61 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVMRDP------------------------------------ 61 (109)
T ss_dssp ---CCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECCCT------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHcc--CCeEEEEEEECC------------------------------------
Confidence 45689999999997764 7899999987 567777665420
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC-CCCCceeecC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST-NPTDWLLEQA 328 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~-~p~~~~v~~A 328 (708)
...+..|.|||+|.+..+|..|.+..... +...+.|+.|
T Consensus 62 -----------------------~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 62 -----------------------LTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp -----------------------TTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred -----------------------CCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 00123689999999999999998764311 2334555554
No 142
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=93.92 E-value=0.066 Score=49.50 Aligned_cols=100 Identities=8% Similarity=0.136 Sum_probs=63.9
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
++||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|.
T Consensus 3 ~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~-------------------------------------- 39 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTE---DNLREYFGKY--GTVTDLKIMKDP-------------------------------------- 39 (167)
T ss_dssp GGEEEECSCCTTCCH---HHHHHHHTTT--CCEEEEECCCCT--------------------------------------
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEECC--------------------------------------
Confidence 579999999998764 7899999987 456666554320
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCCCCceeecCC------CCCCcccCccccc
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAP------EPNDVYWPFFSAS 342 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~p~~~~v~~AP------~P~DIiW~NL~~~ 342 (708)
...++.|.|||+|.+..+|..|.+..+.-+...+.+..|. .+..|.=.||..+
T Consensus 40 ---------------------~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~ 98 (167)
T 2cjk_A 40 ---------------------ATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPD 98 (167)
T ss_dssp ---------------------TTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTT
T ss_pred ---------------------CCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCC
Confidence 0012368999999999999999885322222233333332 2334666677666
Q ss_pred hHHHHHHHHH
Q 005216 343 FMRRWISKIV 352 (708)
Q Consensus 343 ~~~r~~R~~~ 352 (708)
..+.-++.++
T Consensus 99 ~t~~~l~~~F 108 (167)
T 2cjk_A 99 VRPKEFEEFF 108 (167)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5555555544
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=93.87 E-value=0.31 Score=40.92 Aligned_cols=71 Identities=10% Similarity=0.235 Sum_probs=51.9
Q ss_pred CCcceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcc
Q 005216 186 QPHQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (708)
Q Consensus 186 ~~~~~TVlv~~IP~-~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kv 264 (708)
.+..++|.|.|||. +.++ +.|+++|+++ |.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~---~~L~~~F~~~--G~v~~v~i-------------------------------------- 55 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSK---EDLFRIFSPY--GHIMQINI-------------------------------------- 55 (97)
T ss_dssp CCTTCEEEEESCCSSCCCH---HHHHHHHGGG--SCEEEEEE--------------------------------------
T ss_pred CCCCCEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEE--------------------------------------
Confidence 45678999999997 7764 7899999887 44543322
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 265 d~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
..|.|||+|.+..+|..|.+.+... ....++|+.|
T Consensus 56 -----------------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 56 -----------------------------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp -----------------------------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred -----------------------------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 0379999999999999999876554 2345566655
No 144
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=93.70 E-value=0.25 Score=45.72 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=51.3
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...++|.|.|+|.+.++ +.|+++|+++ |.+.++.+.+|-
T Consensus 93 ~~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~~~~~~------------------------------------ 131 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTE---NDIRVMFSSF--GQIEECRILRGP------------------------------------ 131 (175)
T ss_dssp GGGSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred CCCCeEEEcCCCCcCCH---HHHHHHHHhC--CCEEEEEEEECC------------------------------------
Confidence 35689999999997664 7899999987 457777665420
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
. .++.|.|||+|.+.++|..|.+.++..
T Consensus 132 -----------------------~-g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 132 -----------------------D-GLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp -----------------------T-SCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred -----------------------C-CCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 0 112589999999999999999887754
No 145
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=93.56 E-value=0.13 Score=45.94 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=22.9
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhh
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEF 216 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~ 216 (708)
...++|.|.|||.+.++ +.|+++|+++
T Consensus 40 ~~~~~lfVgnLp~~~te---~dL~~~F~~~ 66 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTK---EEIVQFFSGL 66 (126)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcC
Confidence 35689999999998764 8899999886
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=93.50 E-value=0.25 Score=45.47 Aligned_cols=79 Identities=15% Similarity=0.299 Sum_probs=56.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|+|.+.++ +.|+++|+++ |.+.++.+.+|-
T Consensus 86 ~~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~~~----------------------------------- 125 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITD---DQLDTIFGKY--GSIVQKNILRDK----------------------------------- 125 (168)
T ss_dssp TTTTCEEEEESCCTTCCH---HHHHHHHTSS--SCEEEEEEEECT-----------------------------------
T ss_pred cCCCCCEEEeCCCCCCCH---HHHHHhhhcC--CcEEEEEEEEcC-----------------------------------
Confidence 345689999999997663 7899999887 457666665420
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCC----CCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNP----TDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~p----~~~~v~~A 328 (708)
...++.|.|||+|++.++|..|.+.++.... ..+.|+.|
T Consensus 126 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 126 ------------------------LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp ------------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ------------------------CCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 0011258999999999999999998776532 44555543
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=93.43 E-value=0.27 Score=44.96 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=55.5
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....++|.|.|+|.+.++ +.|+++|+++ |.+.++.+.+|.
T Consensus 84 ~~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~~~----------------------------------- 123 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMWDM----------------------------------- 123 (166)
T ss_dssp CTTCEEEEEESCCTTCCH---HHHHHHHTTS--TTEEEEEEEECT-----------------------------------
T ss_pred CCCCceEEECCCCCCCCH---HHHHHHHhcc--CCeeEEEEEecC-----------------------------------
Confidence 345789999999997764 7899999887 457776665430
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...++.|.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 124 ------------------------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 124 ------------------------QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp ------------------------TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ------------------------CCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 001126899999999999999998776542 233444443
No 148
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=93.33 E-value=0.27 Score=49.90 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=45.8
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCCCCcccCccccchHHHHHHHHHH
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVV 353 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~ 353 (708)
.|.|||+|.+.++|..|.+.+... ....+.++.+|...-|.=.||..+..+.-++.++.
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 117 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVR 117 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHG
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHH
Confidence 479999999999999999876644 34556788888888888899987766666665543
No 149
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=93.31 E-value=0.08 Score=48.13 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=26.3
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEE
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVI 227 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 227 (708)
...++|.|.|||.+.++ +.|+++|+++. +++|.++
T Consensus 44 ~~~~~lfV~nLp~~~te---~dL~~~F~~~G---i~~v~i~ 78 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATE---NDIYNFFSPLN---PVRVHIE 78 (139)
T ss_dssp -CCCCEECCSCCTTCCH---HHHHHHHCSCC---CSEEECC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC---CeEEEEE
Confidence 35689999999998764 88999999873 3455554
No 150
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.18 E-value=0.11 Score=43.69 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=35.5
Q ss_pred cEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCCCCccc
Q 005216 296 QAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYW 336 (708)
Q Consensus 296 ~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P~DIiW 336 (708)
|.|||+|+++++|+.|.+.++... ...++++.|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 899999999999999998877654 46788999999999863
No 151
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=93.17 E-value=0.28 Score=47.22 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=55.6
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
..++|.|.|||.+.+ .+.|+++|+++ |.|.++.+.+|.
T Consensus 124 ~~~~l~v~nlp~~~t---~~~l~~~f~~~--G~v~~v~i~~~~------------------------------------- 161 (216)
T 2qfj_A 124 AFNRIYVASVHQDLS---DDDIKSVFEAF--GKIKSATLARDP------------------------------------- 161 (216)
T ss_dssp TSCEEEEECCCTTCC---HHHHHHHHTTS--SCEEEEEEEECT-------------------------------------
T ss_pred CCcEEEEeCCCCcCC---HHHHHHHHhcc--CCeeEEEEEecC-------------------------------------
Confidence 457999999999766 37899999987 567777776431
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..+.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 162 ----------------------~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 162 ----------------------TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp ----------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred ----------------------CCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 001126899999999999999999876542 234555544
No 152
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=93.15 E-value=0.48 Score=39.25 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=55.0
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
..+..++|.||+.+.++ +.|++.|.++. .|.++++..
T Consensus 5 ~~~~wL~VgNL~~~~te---~~L~~lF~q~G--~V~~~~l~~-------------------------------------- 41 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDG---PTLRTLCMQHG--PLVSFHPYL-------------------------------------- 41 (89)
T ss_dssp CCCCEEEEECCCTTCCC---HHHHHHHHHHS--CEEEEEEET--------------------------------------
T ss_pred CccceEEEeCCCccCCH---HHHHHHHHhhC--CEEEEEEcC--------------------------------------
Confidence 45789999999998876 78999999984 465544310
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
+.|.|||+|.++++|..|.+.+...+ ...++|+.|
T Consensus 42 ---------------------------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 42 ---------------------------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp ---------------------------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ---------------------------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 14899999999999999999876543 345677777
No 153
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=93.12 E-value=0.42 Score=46.95 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=28.5
Q ss_pred CCcceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceEEEEE
Q 005216 186 QPHQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTVI 227 (708)
Q Consensus 186 ~~~~~TVlv~~IP~-~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 227 (708)
.+..+||.|.|||. +.++ +.|+++|+++ |.|.++.+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te---~~L~~~F~~~--G~i~~v~i~ 68 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKIL 68 (229)
T ss_dssp CCCCSEEEEESCCTTTCCH---HHHHHHHHHH--TCEEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCH---HHHHHHHHhC--CCeEEEEEE
Confidence 34578999999998 7764 7899999988 456666554
No 154
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.08 E-value=0.11 Score=45.91 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=24.9
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
.|.|||+|.+..+|..|.+ +.... ...+.|..|
T Consensus 67 ~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 6899999999999999998 54432 244566655
No 155
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=93.03 E-value=0.17 Score=50.04 Aligned_cols=80 Identities=5% Similarity=0.066 Sum_probs=57.0
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
..++|.|.|||.+.++ +.|+++|+++....|.++.+.+|-.
T Consensus 67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~d~~------------------------------------ 107 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENRA------------------------------------ 107 (229)
T ss_dssp --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEECTT------------------------------------
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEecCC------------------------------------
Confidence 4579999999998764 7899999987422688887775410
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP 329 (708)
..+..+.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 108 -----------------------tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 108 -----------------------NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp -----------------------TCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred -----------------------CCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 01125899999999999999998766443 3456666663
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=92.76 E-value=0.4 Score=43.86 Aligned_cols=68 Identities=13% Similarity=0.300 Sum_probs=51.0
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
...+|.|.|+|.+.++ +.|+++|+++ |.+.++.+.+|.
T Consensus 87 ~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~~~------------------------------------- 124 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQ---KELEQLFSQY--GRIITSRILVDQ------------------------------------- 124 (167)
T ss_dssp TTCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT-------------------------------------
T ss_pred CCCcEEECCCCCcCCH---HHHHHHHHhc--CCEeEEEEEecC-------------------------------------
Confidence 4689999999997653 7899999987 456666665420
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN 319 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~ 319 (708)
....+.|.|||+|.+.++|..|.+.++...
T Consensus 125 ----------------------~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 125 ----------------------VTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp ----------------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ----------------------CCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 001125899999999999999999877653
No 157
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=92.38 E-value=0.55 Score=45.41 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=26.3
Q ss_pred CcceEEEEeccC-CCCCCchHHHHHHHhhhhCCCcceEEEE
Q 005216 187 PHQFTVLVRSIP-VSAGSTIGDTVENFFKEFHPTTYLSHTV 226 (708)
Q Consensus 187 ~~~~TVlv~~IP-~~~~~~~~~~l~~~f~~~~p~~v~~v~i 226 (708)
++..||.|.||| .+.++ +.|++.|+++ |.|.++.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~---~~L~~~F~~~--G~v~~v~i 37 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNC---DRVFNVFCLY--GNVEKVKF 37 (205)
T ss_dssp CCCSEEEEECCCTTTCCH---HHHHHHHTTT--SCEEEEEE
T ss_pred CCCCEEEEeCCCcccCCH---HHHHHHHHhc--CCeEEEEE
Confidence 345799999999 56653 7899999887 56766655
No 158
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=92.18 E-value=0.21 Score=47.91 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=28.3
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
.+||.|.|||.+.. .+.|+++|+++ |.|.++.+.+
T Consensus 109 ~~~l~V~nLp~~~t---~~~L~~~F~~~--G~v~~v~i~~ 143 (193)
T 2voo_A 109 NRSVYIKGFPTDAT---LDDIKEWLEDK--GQVLNIQMRR 143 (193)
T ss_dssp HTEEEEECCCTTCC---HHHHHHHHTTS--CCEEEEEEEE
T ss_pred cCEEEecCCCCcCC---HHHHHHHHhcC--CCEEEEEEEE
Confidence 47999999999765 38899999987 5677777764
No 159
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=92.17 E-value=0.42 Score=45.48 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=25.7
Q ss_pred cceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceEEEE
Q 005216 188 HQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTV 226 (708)
Q Consensus 188 ~~~TVlv~~IP~-~~~~~~~~~l~~~f~~~~p~~v~~v~i 226 (708)
+++||.|.|||. +.++ +.|+++|+++ |.+.++.+
T Consensus 2 ~~~~l~v~nlp~~~~~~---~~l~~~F~~~--G~i~~v~i 36 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKI 36 (198)
T ss_dssp CCCEEEEECCCSSSCCH---HHHHHHHHTT--CCCSEEEC
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEE
Confidence 457999999999 7664 7899999887 34555544
No 160
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=92.04 E-value=0.22 Score=43.74 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=60.8
Q ss_pred cceEEEEeccCC--CCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 188 HQFTVLVRSIPV--SAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 188 ~~~TVlv~~IP~--~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
.+++|.++|+-. +.++++.+.|++.|+++ |.|.++.+.+|.. + +
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~-----------------------------~---~ 64 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQ-----------------------------G---E 64 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEE-----------------------------S---S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCC-----------------------------C---c
Confidence 467999999953 45567889999999987 6788888876421 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPE 330 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~ 330 (708)
....+..|.|||+|.+..+|..|.+.+.... ...+.++.+|+
T Consensus 65 -----------------------~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 65 -----------------------EEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp -----------------------STTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred -----------------------ccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 0001125899999999999999999887653 34456666653
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=92.03 E-value=0.39 Score=44.10 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=52.6
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
..+|.|.|+|.+.++ +.|+++|+++ |.+.++.+.+|-
T Consensus 87 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~~-------------------------------------- 123 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRP---KEFEEFFSQW--GTIIDAQLMLDK-------------------------------------- 123 (167)
T ss_dssp CEEEEEEEECTTCCH---HHHHHHHHTT--SCCSEEECCCSS--------------------------------------
T ss_pred CCeEEECCCCCCCCH---HHHHHHHHhC--ccEEEEEEEEcC--------------------------------------
Confidence 579999999997664 7899999987 456665554320
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
...++.|.|||+|.+.++|..|.+ .... ....+.|+.|
T Consensus 124 ---------------------~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 124 ---------------------DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp ---------------------SSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred ---------------------CCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 001236899999999999999988 3322 2345667766
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=91.73 E-value=0.37 Score=44.51 Aligned_cols=78 Identities=13% Similarity=0.226 Sum_probs=54.9
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...++|.|.|+|.+.++ +.|+++|+++ |.+.++.+.+|- +
T Consensus 92 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~----------------------------------~- 131 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKDS----------------------------------A- 131 (172)
T ss_dssp TTTTCEEEECCCTTCCH---HHHHHHHHTT--SCEEEEEEEECT----------------------------------T-
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCceEEEEEecC----------------------------------C-
Confidence 34689999999997763 7899999987 557776665431 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
..++.|.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 132 ------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 132 ------------------------TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ------------------------TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ------------------------CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 01125899999999999999998776542 233445443
No 163
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=91.02 E-value=0.74 Score=46.73 Aligned_cols=99 Identities=19% Similarity=0.298 Sum_probs=68.1
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|.
T Consensus 39 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------ 77 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQ---NKVYKYFKHC--GPIIHVDVADSL------------------------------------ 77 (292)
T ss_dssp ---CEEEEEEECTTCCH---HHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC------------------------------------
Confidence 45789999999998764 7899999987 457777665420
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCCCCcccCccccchH
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYWPFFSASFM 344 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P~DIiW~NL~~~~~ 344 (708)
.+ ..|.|||+|.+..+|..|.+ +... +...+.++.++ ..-|.=.||.....
T Consensus 78 -----------------------~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~-~~~l~v~nlp~~~t 130 (292)
T 2ghp_A 78 -----------------------KK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT-ECTLWMTNFPPSYT 130 (292)
T ss_dssp -----------------------TS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-SCEEEEECCCTTCC
T ss_pred -----------------------CC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-CCEEEEECCCCCCC
Confidence 00 15899999999999999985 3322 22345566663 56677788877766
Q ss_pred HHHHHHHHH
Q 005216 345 RRWISKIVV 353 (708)
Q Consensus 345 ~r~~R~~~~ 353 (708)
+..++.++.
T Consensus 131 ~~~l~~~f~ 139 (292)
T 2ghp_A 131 QRNIRDLLQ 139 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=90.64 E-value=0.59 Score=44.10 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=54.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 102 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------ 140 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEE---HHLRDYFEQY--GKIEVIEIMTDR------------------------------------ 140 (196)
T ss_dssp -CCSEEEEECCTTTCCH---HHHHHHHTTT--SCEEEEEEEECT------------------------------------
T ss_pred CCcceEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEeecC------------------------------------
Confidence 44589999999997764 7899999987 567777665431
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
...+..|.|||+|.+.++|..|.+. ... +...+.|+.|-
T Consensus 141 -----------------------~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 141 -----------------------GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -----------------------TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred -----------------------CCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 0012368999999999999999875 222 22345566654
No 165
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=90.60 E-value=0.62 Score=50.73 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=58.6
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
..||.|.|||.+..+ +.|+++|+++ |.|..|.+++|-
T Consensus 102 ~~~lfV~nL~~~~te---~~L~~~F~~~--G~I~~v~i~~d~-------------------------------------- 138 (437)
T 3pgw_S 102 FKTLFVARVNYDTTE---SKLRREFEVY--GPIKRIHMVYSK-------------------------------------- 138 (437)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEEeeccC--------------------------------------
Confidence 479999999997764 7899999987 557666665430
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCCCCccc
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYW 336 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P~DIiW 336 (708)
...+..|.|||+|.+..+|..|.+.+.... ...+.|+.|-....=-|
T Consensus 139 ---------------------~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~~~ 187 (437)
T 3pgw_S 139 ---------------------RSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGW 187 (437)
T ss_pred ---------------------CCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCCC
Confidence 001236899999999999999998876543 34456666643333334
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=90.37 E-value=0.53 Score=45.61 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=54.7
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHH
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~ 268 (708)
..+|.|.|+|.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 103 ~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~~~i~~d~-------------------------------------- 139 (213)
T 4f02_A 103 VGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDE-------------------------------------- 139 (213)
T ss_dssp TTEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEET--------------------------------------
T ss_pred cccceECCcccccHH---HHHHHHHhhc--CCeEEEEeeccC--------------------------------------
Confidence 468999999997764 7899999987 567777665420
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 269 ~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
.. ..|.|||+|.+.++|..|.+.++... ...+.|+.|
T Consensus 140 ---------------------~~--~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 140 ---------------------NG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp ---------------------TE--EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ---------------------CC--CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 00 14899999999999999998876542 334566655
No 167
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=90.20 E-value=0.69 Score=39.44 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=27.8
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP 329 (708)
+.|.|||+|.+..+|..|.+.++... ...+.|+.+|
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 36999999999999999998876542 3445566665
No 168
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=90.06 E-value=0.8 Score=43.25 Aligned_cols=78 Identities=12% Similarity=0.192 Sum_probs=56.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
...++|.|.|+|.+.+ .+.|+++|+++ |.+.++.+.+|.
T Consensus 112 ~~~~~l~v~nl~~~~~---~~~l~~~f~~~--G~v~~~~~~~~~------------------------------------ 150 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLN---DDQVKELLTSF--GPLKAFNLVKDS------------------------------------ 150 (198)
T ss_dssp CCCCEEEEECCCTTCC---HHHHHHHHHTB--SCEEEEEEEECT------------------------------------
T ss_pred CCCCEEEEeCCCCCCC---HHHHHHHHHHc--CCccEEEEeecC------------------------------------
Confidence 4568999999999765 37899999987 456666665431
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
...+..|.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 151 -----------------------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 151 -----------------------ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp -----------------------TTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred -----------------------CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 001126899999999999999998776542 345666665
No 169
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=90.01 E-value=1.5 Score=40.12 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=35.6
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC------CCCCcccCccccchHHHHHHHHH
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP------EPNDVYWPFFSASFMRRWISKIV 352 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 352 (708)
.|.|||+|.+.++|..|. .+... ....+.++.+. .+.-|.=.||..+..+..++.++
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 115 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELL 115 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHH
Confidence 489999999999999998 44332 12233444332 23556666776665555555544
No 170
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.97 E-value=1 Score=38.72 Aligned_cols=44 Identities=14% Similarity=-0.039 Sum_probs=33.8
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCCCCcccCc
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYWPF 338 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P~DIiW~N 338 (708)
.|.|||+|.+..+|..|.+.+... ....+.|+.|.+..|.-++.
T Consensus 64 ~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 64 DGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp TCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred CEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 689999999999999999887654 34557788886666665544
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=89.51 E-value=1.5 Score=44.07 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=24.6
Q ss_pred CcceEEEEeccCCCCCC-chHHHHHHHhhhhCCCcceEEEE
Q 005216 187 PHQFTVLVRSIPVSAGS-TIGDTVENFFKEFHPTTYLSHTV 226 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~-~~~~~l~~~f~~~~p~~v~~v~i 226 (708)
...+||.|.|||.+.++ ++++.|.++|+++ |.|.++.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~--G~i~~v~~ 45 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQF--GQILDILV 45 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc--CCeEEEEE
Confidence 45689999999996553 3333355788766 45555433
No 172
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=89.44 E-value=0.95 Score=44.94 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=49.1
Q ss_pred CCcceEEEEeccCCCCC------CchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 005216 186 QPHQFTVLVRSIPVSAG------STIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKN 259 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~------~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk 259 (708)
....+||.|.|||.+.+ +...+.|+++|+++ |.|.+|.++.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~------------------------------- 177 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVE------------------------------- 177 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEG-------------------------------
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEEC-------------------------------
Confidence 34568999999998642 11357899999987 5676665531
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 260 QQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 260 ~g~kvd~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
..|.|||+|.+..+|..|.+.+...
T Consensus 178 ----------------------------------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 178 ----------------------------------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp ----------------------------------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ----------------------------------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 0279999999999999998876654
No 173
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=88.69 E-value=0.91 Score=45.87 Aligned_cols=81 Identities=9% Similarity=-0.019 Sum_probs=57.9
Q ss_pred CcceEEEEeccCCCC-CCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 187 PHQFTVLVRSIPVSA-GSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~-~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
....+|.|.|+|.+. + .+.|+++|+++ |.+.++.+.+|.
T Consensus 182 ~~~~~l~v~nlp~~~~~---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 221 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFND---VDALCRALSAV--HSPTFCQLACGQ----------------------------------- 221 (284)
T ss_dssp TSCSEEEEECCCTTCCC---HHHHHHHTCSS--SCCSEEEEEECS-----------------------------------
T ss_pred CCccEEEEecCCcccCC---HHHHHHHhhCC--CCeEEEEEEECC-----------------------------------
Confidence 456899999999973 4 37899999887 457676665320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCCCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPN 332 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~P~ 332 (708)
..++.|.|||+|.+..+|..|.+.+.... ...+.|..|....
T Consensus 222 -------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 222 -------------------------DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp -------------------------SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred -------------------------CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 01126899999999999999999876543 3456777774433
No 174
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=88.57 E-value=1.1 Score=44.78 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=54.8
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchH
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i 267 (708)
...+|.|.|+|.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 95 ~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------- 132 (261)
T 3sde_A 95 HGAALTVKNLSPVVSN---ELLEQAFSQF--GPVEKAVVVVDD------------------------------------- 132 (261)
T ss_dssp CSSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEET-------------------------------------
T ss_pred cCCcccccCCCCCCCH---HHHHHHHHhc--CCeEEEEeeeCC-------------------------------------
Confidence 4579999999987653 7899999887 467777666430
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC------CCCCceeecC
Q 005216 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST------NPTDWLLEQA 328 (708)
Q Consensus 268 ~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~------~p~~~~v~~A 328 (708)
..+..|.|||+|.+..+|..|.+.+.+. .+..+.|+.|
T Consensus 133 -----------------------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 133 -----------------------RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp -----------------------TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred -----------------------CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence 0112689999999999999999887432 2444555544
No 175
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=86.80 E-value=2 Score=40.37 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=21.1
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhh
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEF 216 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~ 216 (708)
.++||.|.|||.+.++ +.|+++|+++
T Consensus 3 ~~~~l~V~nLp~~~te---~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGITE---EAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCCH---HHHHHHHHHH
Confidence 4689999999998764 7888888876
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=86.17 E-value=2 Score=40.64 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=52.6
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCC-cceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPT-TYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
+...||.|.|+|.+.++ +.|+++|+++ | .+.++.+.. +
T Consensus 118 ~~~~~l~v~nl~~~~~~---~~l~~~f~~~--G~~v~~v~i~~------------------------------------~ 156 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSE---EDLKVLFSSN--GGVVKGFKFFQ------------------------------------K 156 (198)
T ss_dssp CCCCEEEECCCCTTCCH---HHHHHHHHHT--TSCCCEEEESS------------------------------------T
T ss_pred CCccEEEEeCCCCCCCH---HHHHHHHHHc--CCCceEEEEEe------------------------------------C
Confidence 45789999999997653 7899999887 4 555554421 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC---CCCceeecC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN---PTDWLLEQA 328 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~---p~~~~v~~A 328 (708)
..|.|||+|.+..+|..|.+.++... ...+.+..|
T Consensus 157 ----------------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 157 ----------------------------DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp ----------------------------TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred ----------------------------CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 03799999999999999999877643 234555554
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=85.34 E-value=2.2 Score=42.89 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=47.8
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
+..+||.|.|||.+.++ +.|+++|+++ |.|.++.+..+ +
T Consensus 205 ~~~~~l~v~nl~~~~~~---~~l~~~F~~~--G~i~~v~~~~~--------------------------------~---- 243 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNE---LMLSMLFNQF--PGFKEVRLVPG--------------------------------R---- 243 (282)
T ss_pred CCCCEEEEeCCCCcCCH---HHHHHHHHhc--CCeEEEEEecC--------------------------------C----
Confidence 45689999999987653 7899999876 45655544310 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
.|.|||+|.+.++|..|.+.++..
T Consensus 244 ----------------------------~g~afV~f~~~~~A~~A~~~l~g~ 267 (282)
T 3pgw_A 244 ----------------------------HDIAFVEFDNEVQAGAARDALQGF 267 (282)
T ss_pred ----------------------------CcEEEEEeCCHHHHHHHHHHcCCc
Confidence 269999999999999999987654
No 178
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=84.87 E-value=1.1 Score=39.04 Aligned_cols=35 Identities=14% Similarity=-0.000 Sum_probs=26.9
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP 329 (708)
.|.|||+|.+..+|..|.+.+.... ...+.++.+|
T Consensus 55 ~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 55 QGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 6999999999999999999887652 3345555554
No 179
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=84.84 E-value=1.8 Score=41.65 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=48.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcc--eEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTY--LSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRK 263 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v--~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~k 263 (708)
.+..+||.|.|||.+.++ +.|+++|++.. .| .++.+..+
T Consensus 120 ~~p~~~l~v~NLp~~~t~---~~L~~~F~~~G--~v~~~~v~~~~~---------------------------------- 160 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTE---ENFFEICDELG--VKRPTSVKVFSG---------------------------------- 160 (205)
T ss_dssp CCCCSEEEEEEECTTCCH---HHHHHHHHHHT--CCCCSEEEECSC----------------------------------
T ss_pred CCCcceEEEeCCCCCCCH---HHHHHHHHhcC--CcceEEEEEEcC----------------------------------
Confidence 345679999999997764 78999999873 34 44433211
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 005216 264 VDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 264 vd~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
. .+..+.|||.|.+.++|..|.+.++..
T Consensus 161 --------------------------~-~~~~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 161 --------------------------K-SERSSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp --------------------------C-SSSSEEEEEECSSHHHHHHHHHHHTTC
T ss_pred --------------------------C-CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 0 112589999999999999999987653
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=84.54 E-value=3.3 Score=40.34 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=53.3
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCC-cceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccc
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPT-TYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd 265 (708)
+...||.|.|+|.+.++ +.|+++|+++ | .+.++.+.. +
T Consensus 149 ~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~~i~~v~i~~------------------------------------~ 187 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSE---EDLKVLFSSN--GGVVKGFKFFQ------------------------------------K 187 (229)
T ss_dssp CSCSEEEEECCCTTCCH---HHHHHHHHTT--SCCEEEEEECS------------------------------------S
T ss_pred CCCCEEEEeCCCccCCH---HHHHHHHHHc--CCCeeEEEEEE------------------------------------C
Confidence 45689999999997653 7899999887 4 555554421 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC---CCCceeecCC
Q 005216 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN---PTDWLLEQAP 329 (708)
Q Consensus 266 ~i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~---p~~~~v~~AP 329 (708)
..+.|||+|.+.++|..|.+.+.... ...+.|..|-
T Consensus 188 ----------------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 188 ----------------------------DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp ----------------------------STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred ----------------------------CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 03799999999999999999776542 3455666553
No 181
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.59 E-value=1.7 Score=36.72 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=26.8
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCCCCCceeecCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAP 329 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~~p~~~~v~~AP 329 (708)
.|.|||+|.+..+|..|.+.........++|+.|-
T Consensus 54 rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 54 PGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 58999999999999999987544444556666653
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=83.30 E-value=1.8 Score=43.88 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=52.9
Q ss_pred cceEEEEeccCCC-CCCchHHHHHHHhhhhCCCcceEEEEEcccchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccch
Q 005216 188 HQFTVLVRSIPVS-AGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (708)
Q Consensus 188 ~~~TVlv~~IP~~-~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~ 266 (708)
..++|.|.|||.+ .++ +.|+++|+++ |.|.++.+.+|. +.
T Consensus 209 ~~~~l~v~nlp~~~~t~---~~l~~~F~~~--G~v~~v~i~~~~----------------------------------~~ 249 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDE---NLLRESFEGF--GSIEKINIPAGQ----------------------------------KE 249 (292)
T ss_dssp TTTEEEEEEECTTTCCH---HHHHHHHGGG--SCEEEEECCSCC----------------------------------C-
T ss_pred CCceEEEECCCcccCCH---HHHHHHHhcc--CCeeEEEEEecC----------------------------------Cc
Confidence 4579999999988 663 7899999987 456666554320 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 267 i~~~~~~i~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
. .++.|.|||+|.+..+|..|. .+.... ...+.|..|
T Consensus 250 -----------------------t-g~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 250 -----------------------H-SFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp --------------------------CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEEC
T ss_pred -----------------------C-CCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEe
Confidence 0 123689999999999999998 665432 334555555
No 183
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=83.17 E-value=3.5 Score=34.25 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=26.6
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP 329 (708)
..|.|||+|.+..+|..|.+ +.... ...+.|+.|-
T Consensus 57 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 57 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred cCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46899999999999999998 65432 3456676663
No 184
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=82.68 E-value=2.2 Score=36.28 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=27.3
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP 329 (708)
.|.|||+|.+..+|..|.+.++... ...++++.+|
T Consensus 59 ~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 59 CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 6899999999999999999887653 3445566554
No 185
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.54 E-value=2.7 Score=35.92 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=27.0
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
..+.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 66 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 66 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 46999999999999999998776542 345666655
No 186
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=78.87 E-value=1.9 Score=35.96 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=30.7
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcc
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 229 (708)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDE---TEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEEC
Confidence 345689999999997764 7899999987 56777777653
No 187
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.00 E-value=3 Score=34.71 Aligned_cols=34 Identities=24% Similarity=0.127 Sum_probs=25.9
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
.+.|||+|.+.++|+.|.+.++.. +...+.|+.|
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 53 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 689999999999999999876543 2344556655
No 188
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=74.92 E-value=2.8 Score=38.88 Aligned_cols=35 Identities=11% Similarity=0.024 Sum_probs=28.0
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCCC----CCceeecCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQSTNP----TDWLLEQAP 329 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~~p----~~~~v~~AP 329 (708)
.+.|||+|.+.++|..|.+.+....- ..++|+.|-
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 57899999999999999998876543 456777663
No 189
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.91 E-value=2 Score=36.72 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=28.3
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 189 ~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
.+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 25 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 59 (114)
T 2cq4_A 25 ARTVFCMQLAARIRP---RDLEDFFSAV--GKVRDVRIIS 59 (114)
T ss_dssp HTEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhC--CCEeEEEEEe
Confidence 479999999998764 7899999987 5677777754
No 190
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=73.72 E-value=2.4 Score=34.86 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=27.0
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
.|.|||+|.+..+|..|.+.+... ....+.|+.|.
T Consensus 53 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 589999999999999999876543 23446677663
No 191
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.13 E-value=3.4 Score=34.11 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=26.2
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP 329 (708)
.+.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 49 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 49 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 589999999999999999876543 23445666553
No 192
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.83 E-value=2.6 Score=34.41 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=26.7
Q ss_pred CcEEEEEecCHHHHHHHHHhccc-C--CCCCceeecCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQS-T--NPTDWLLEQAP 329 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~-~--~p~~~~v~~AP 329 (708)
.+.|||+|.+.++|..|.+.++. . ....+.|+.|-
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 47999999999999999987765 3 33456666653
No 193
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=67.66 E-value=6.9 Score=33.98 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=26.8
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP 329 (708)
.|.|||+|.+..+|..|.+.+.... ...+.|+.|-
T Consensus 73 kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 73 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 5899999999999999998766542 3456666654
No 194
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.26 E-value=5 Score=32.82 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=24.7
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceE
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLS 223 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~ 223 (708)
...++|.|.|||.+.++ +.|+++|+++ |.|.+
T Consensus 6 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~v~~ 37 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDS---AQLSEYFLAF--GPVAS 37 (94)
T ss_dssp TTCCEEEEECCCTTCCH---HHHHHHGGGT--SCEEE
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEE
Confidence 34579999999998764 7899999887 44544
No 195
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=59.73 E-value=9.1 Score=30.43 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=21.7
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhh
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEF 216 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~ 216 (708)
..+||.|.|||.+.++ +.|+++|++.
T Consensus 5 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 30 (87)
T 2hzc_A 5 SARRLYVGNIPFGITE---EAMMDFFNAQ 30 (87)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHH
Confidence 4689999999997764 7888999876
No 196
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.57 E-value=6.4 Score=34.08 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=20.7
Q ss_pred cEEEEEecCHHHHHHHHHhcccC
Q 005216 296 QAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 296 ~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
|.|||+|.+.++|..|.+.++..
T Consensus 64 gfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 64 PYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999987665
No 197
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=58.36 E-value=13 Score=32.57 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=29.0
Q ss_pred c-EEEEEecCHHHHHHHHHhcccCCC----CCceeecCCCCC
Q 005216 296 Q-AAFVSFKSRYGAAIAFHMQQSTNP----TDWLLEQAPEPN 332 (708)
Q Consensus 296 ~-~AFVtF~s~~~a~~a~q~~~~~~p----~~~~v~~AP~P~ 332 (708)
| .|||+|.+..+|..|.+.+....- ..++|+.|-.++
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5 599999999999999998876643 357788775444
No 198
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.91 E-value=11 Score=30.62 Aligned_cols=35 Identities=9% Similarity=-0.004 Sum_probs=23.9
Q ss_pred cEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCCC
Q 005216 296 QAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (708)
Q Consensus 296 ~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~P 331 (708)
..|||+|.+..+|..|.+ +... ....+.|+.|.+.
T Consensus 46 ~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 46 VFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred cEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 039999999999999998 5543 2334556666443
No 199
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=57.41 E-value=7.1 Score=34.75 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=26.4
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
..|.|||+|.+..+|..|.+.++... ...+.|+.|
T Consensus 91 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 91 MKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred cccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 36899999999999999998776542 334556555
No 200
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=55.49 E-value=12 Score=34.20 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=38.1
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecCCC--------CCCcccCccccchHHHHHHHHHH
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPE--------PNDVYWPFFSASFMRRWISKIVV 353 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~AP~--------P~DIiW~NL~~~~~~r~~R~~~~ 353 (708)
..|.|||+|.+.++|..|.+ +... ....+.++.|.. ..-|.=.||..+..+.-++.++.
T Consensus 53 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 121 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE 121 (175)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCT
T ss_pred cccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHH
Confidence 36899999999999999996 4332 223445554432 23466677776655655665543
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=54.37 E-value=10 Score=34.62 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=27.5
Q ss_pred CCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 293 HELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 293 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
+..|.|||+|.+..+|..|.+.++.. ....+.|+.|
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 34799999999999999999977643 2344666666
No 202
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=54.32 E-value=8.2 Score=30.72 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.0
Q ss_pred CcEEEEEecCHHHHHHHHHhccc
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQS 317 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~ 317 (708)
.+.|||+|.+.++|..|. .+..
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CcEEEEEcCCHHHHHHHH-hcCC
Confidence 689999999999999998 5543
No 203
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=52.89 E-value=7.8 Score=26.34 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=16.5
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 005216 263 KVDLVDHYGKRLENIEENSRL 283 (708)
Q Consensus 263 kvd~i~~~~~~i~~l~~~I~~ 283 (708)
|.|-|.|.++++..+.++|++
T Consensus 29 kkdliaylekeianlrkkiee 49 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 448899999999998888753
No 204
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.61 E-value=11 Score=31.49 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=26.8
Q ss_pred CCcceEEEEeccCCCCC-CchHHHHHHHhhhhCCCcceEE
Q 005216 186 QPHQFTVLVRSIPVSAG-STIGDTVENFFKEFHPTTYLSH 224 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~-~~~~~~l~~~f~~~~p~~v~~v 224 (708)
.|++.++.|.|||.+.+ +++++.|++.|+++. |.|.+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG-G~Vl~V 44 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG-GKVLSI 44 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT-CCEEEC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC-CeeEEE
Confidence 34454488999998655 346677889999872 366665
No 205
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.72 E-value=17 Score=30.75 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=25.7
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhh---CCCcceEEE
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEF---HPTTYLSHT 225 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~---~p~~v~~v~ 225 (708)
...+|.|+|+|++.++ +.|+-||++- ..|.|.++.
T Consensus 7 ~~~~I~V~~lPp~~~~---e~L~LYFEn~rrsGGG~V~~v~ 44 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPD---ELLTLYFENRRRSGGGPVLSWQ 44 (104)
T ss_dssp CCCEEEEESCCTTSCH---HHHHHHHHCTTTTCCCCEEEEE
T ss_pred CccEEEEECCCCCCCh---hHheEEEeCCCcCCCceeeEEE
Confidence 4579999999997764 7899999873 344565543
No 206
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=54.69 E-value=3.6 Score=35.26 Aligned_cols=34 Identities=21% Similarity=0.070 Sum_probs=24.2
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCC--CCCceeecC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~A 328 (708)
.+.|||+|.+.++|..|.+.+.... ...+.|+.|
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 57 KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 5799999999999999988665432 234455554
No 207
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=48.37 E-value=12 Score=33.04 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=27.2
Q ss_pred cEEEEEecCHHHHHHHHHhcccCCC----CCceeecCCC
Q 005216 296 QAAFVSFKSRYGAAIAFHMQQSTNP----TDWLLEQAPE 330 (708)
Q Consensus 296 ~~AFVtF~s~~~a~~a~q~~~~~~p----~~~~v~~AP~ 330 (708)
..|||+|.+..+|..|.+.+....- ..++++.|..
T Consensus 67 fqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 67 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred cEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 3599999999999999998876532 4567777743
No 208
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.42 E-value=8 Score=32.80 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=19.3
Q ss_pred CCcEEEEEecCHHHHHHHHHhccc
Q 005216 294 ELQAAFVSFKSRYGAAIAFHMQQS 317 (708)
Q Consensus 294 ~~~~AFVtF~s~~~a~~a~q~~~~ 317 (708)
..|.|||+|.+..+|..|. .+..
T Consensus 66 ~~g~afV~f~~~~~a~~A~-~l~g 88 (114)
T 2cq4_A 66 SKGIAYVEFCEIQSVPLAI-GLTG 88 (114)
T ss_dssp CCCCEEEEESCGGGHHHHH-HHTT
T ss_pred cCcEEEEEeCcHHHHHHHH-HcCC
Confidence 3689999999999999998 5543
No 209
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=51.40 E-value=4.4 Score=34.68 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=22.2
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhC
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFH 217 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~ 217 (708)
...++|.|.|||.+.++ +.|+++|+++.
T Consensus 5 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G 32 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTI---ESVADYFKQIG 32 (116)
Confidence 45689999999997654 67888998773
No 210
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.07 E-value=14 Score=30.43 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhh
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEF 216 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~ 216 (708)
....++|.|.|||.+.++ +.|+++|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATE---ETLQEVFEKA 39 (101)
T ss_dssp SCCCSEEEEESCCTTCCH---HHHHHHCSSC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC
Confidence 345789999999998764 7899999875
No 211
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.87 E-value=14 Score=29.84 Aligned_cols=30 Identities=7% Similarity=0.179 Sum_probs=24.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCC
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHP 218 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~p 218 (708)
....+||.|.|||.+.++ +.|+++|+++.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~ 34 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTA---DDLRQLFGDRKL 34 (93)
T ss_dssp CCCCCCEEEECCCTTCCH---HHHHHHHHHTTC
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHHcCC
Confidence 345689999999998764 789999998753
No 212
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=43.35 E-value=22 Score=31.63 Aligned_cols=37 Identities=11% Similarity=0.291 Sum_probs=28.8
Q ss_pred eEEEEecc----CCCCCCchHHHHHHHhhhhCCCcceEEEEEcccc
Q 005216 190 FTVLVRSI----PVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTS 231 (708)
Q Consensus 190 ~TVlv~~I----P~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~ 231 (708)
..|.|.|+ |.+..+ +.|++||+++ |.|.++.+..|-.
T Consensus 3 ~kI~VgnL~~~~~~~tte---~~Lk~~Fs~f--GeV~~~~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQD---ISIKNYFKKY--GEISHFEAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCCH---HHHHHHHHTT--SCCSEEEEEECTT
T ss_pred cEEEEeCCCCCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC
Confidence 46899999 887764 7899999987 5677777766643
No 213
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.85 E-value=17 Score=30.04 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=0.0
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC--CCCCceeecC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~--~p~~~~v~~A 328 (708)
.+.+||||++.++|..|.+ +... ....++|+.|
T Consensus 49 ~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 49 EDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred cCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
No 214
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=36.35 E-value=22 Score=29.12 Aligned_cols=27 Identities=7% Similarity=0.230 Sum_probs=22.1
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhC
Q 005216 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFH 217 (708)
Q Consensus 188 ~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~ 217 (708)
..++|.|.|||.+.++ +.|+++|+++.
T Consensus 16 ~~~~l~V~nLp~~~t~---~~l~~~F~~~G 42 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSV---AELKVAISELF 42 (101)
T ss_dssp CSEEEEEECCCTTSCH---HHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 5789999999997764 77888888763
No 215
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=36.09 E-value=23 Score=28.66 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhh
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEF 216 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~ 216 (708)
....+||.|.|||.+.++ +.|+++|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t~---~~l~~~F~~~ 40 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITE---DELKEVFEDA 40 (96)
T ss_dssp TTGGGEEEEESCCSSCCH---HHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhhC
Confidence 446789999999997764 7899999876
No 216
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.92 E-value=26 Score=29.43 Aligned_cols=28 Identities=7% Similarity=0.253 Sum_probs=22.7
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhC
Q 005216 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFH 217 (708)
Q Consensus 187 ~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~ 217 (708)
+..+||.|.|||.+.++ +.|+++|+++.
T Consensus 23 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~G 50 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTE---RDLVSLFARFQ 50 (115)
T ss_dssp SCCSEEEEECCCTTCCH---HHHHHHTHHHH
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 35689999999997764 78899998873
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=35.76 E-value=49 Score=29.47 Aligned_cols=62 Identities=3% Similarity=-0.138 Sum_probs=39.7
Q ss_pred CCCcEEEEEecCHHHHHHHHHhcccC------------CC---------CCceeecCCCCCCcccCccccchHHHHHHHH
Q 005216 293 HELQAAFVSFKSRYGAAIAFHMQQST------------NP---------TDWLLEQAPEPNDVYWPFFSASFMRRWISKI 351 (708)
Q Consensus 293 ~~~~~AFVtF~s~~~a~~a~q~~~~~------------~p---------~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~ 351 (708)
+..|.|||+|.+..+|..|.+..... .+ ........+....|+-.||.....+.-++.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 34799999999999999987654321 00 0111122334567788899877777777766
Q ss_pred HHH
Q 005216 352 VVV 354 (708)
Q Consensus 352 ~~~ 354 (708)
+..
T Consensus 91 F~~ 93 (158)
T 2kn4_A 91 FEK 93 (158)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 218
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=33.80 E-value=30 Score=33.10 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=28.7
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCC--CCCceeecCCC
Q 005216 295 LQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPE 330 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q~~~~~~--p~~~~v~~AP~ 330 (708)
.|.+||.|++..+|..|.+.+.... ...+.++.+|+
T Consensus 175 ~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 175 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred eeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 5899999999999999999987653 45566666663
No 219
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=30.15 E-value=11 Score=31.10 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=17.7
Q ss_pred CcEEEEEecCHHHHHHHHH
Q 005216 295 LQAAFVSFKSRYGAAIAFH 313 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q 313 (708)
.|.|||+|.+.++|..|.+
T Consensus 50 ~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 50 KGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEESSCCCHHHHTT
T ss_pred cceEEEEECCHHHHHHHHh
Confidence 6899999999999999987
No 220
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.09 E-value=48 Score=28.46 Aligned_cols=37 Identities=3% Similarity=-0.057 Sum_probs=27.8
Q ss_pred CcceEEEE--eccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 187 PHQFTVLV--RSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 187 ~~~~TVlv--~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
...+++.| -|+|.+.++ +.|+++|+++ |.|.++.+..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te---~~L~~~F~~f--G~v~~v~i~~ 61 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSR---NQLLPVLEKC--GLVDALLMPP 61 (114)
T ss_dssp SCCSEEEEETCTGGGTCCH---HHHHHHHHHH--SCEEEEECCT
T ss_pred CCCCEEEEECCCCCCCCCH---HHHHHHHHhc--CCeEEEEEeC
Confidence 34578999 559987764 7899999998 4677776643
No 221
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=28.90 E-value=34 Score=35.56 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=20.6
Q ss_pred cEEEEEecCHHHHHHHHHhcccC
Q 005216 296 QAAFVSFKSRYGAAIAFHMQQST 318 (708)
Q Consensus 296 ~~AFVtF~s~~~a~~a~q~~~~~ 318 (708)
|.|||+|++.++|+.|.+.+...
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999987653
No 222
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.93 E-value=1e+02 Score=25.93 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=29.6
Q ss_pred cEEEEEecCHHHHHHHHHh-cccCCCCCceeecCC--CCCCcccCccc
Q 005216 296 QAAFVSFKSRYGAAIAFHM-QQSTNPTDWLLEQAP--EPNDVYWPFFS 340 (708)
Q Consensus 296 ~~AFVtF~s~~~a~~a~q~-~~~~~p~~~~v~~AP--~P~DIiW~NL~ 340 (708)
+.|.|||.+...|+.+.+. -+.-+...+.|.+.| +|+-+.-++|.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLP 95 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecCC
Confidence 8999999999999888765 222234555565544 45555555554
No 223
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=25.30 E-value=55 Score=28.65 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhC
Q 005216 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFH 217 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~~~~~~~~l~~~f~~~~ 217 (708)
.....||.|.|||.+..+ +.|+++|+++.
T Consensus 42 ~~~~~~l~V~nLp~~~te---~~L~~~F~~~G 70 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQE---KDLKYIFGRYV 70 (143)
T ss_dssp CSCCSEEEEEEECTTCCH---HHHHHHHGGGC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 345689999999997764 78999999874
No 224
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=24.85 E-value=60 Score=29.80 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=27.2
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
.+|.|.|+|.+.++ +.|++.|+++ |.|.++.+..
T Consensus 47 l~l~VgNL~~~vte---d~L~~~Fs~f--G~V~~V~i~~ 80 (164)
T 1sjr_A 47 LRIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFT 80 (164)
T ss_dssp EEEEECSCCSCCCH---HHHHHHHHHH--SCEEEEEEEE
T ss_pred EEEEEeCcCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 56789999987664 7899999998 6788887753
No 225
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=24.03 E-value=39 Score=22.71 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=12.4
Q ss_pred HhhhHHHHHHHHHHHHH
Q 005216 553 FFLAPLILPFLLIYLCL 569 (708)
Q Consensus 553 s~i~Plil~~~~~yF~~ 569 (708)
+.+.|+++.++.+||++
T Consensus 4 ~~~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMI 20 (37)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34667888888888765
No 226
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=23.44 E-value=53 Score=27.43 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=29.7
Q ss_pred cceEEEEecc--CCCCCC-----chHHHHHHHhhhhCCCcceEEEEEccc
Q 005216 188 HQFTVLVRSI--PVSAGS-----TIGDTVENFFKEFHPTTYLSHTVIHQT 230 (708)
Q Consensus 188 ~~~TVlv~~I--P~~~~~-----~~~~~l~~~f~~~~p~~v~~v~i~~~~ 230 (708)
.++.|.++|+ |.+..+ ++.+.|++.|+++ |.|.++.+.+|.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~ 51 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPV 51 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCB
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccC
Confidence 4578999998 443332 3567888999887 678888888765
No 227
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=23.15 E-value=69 Score=28.14 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=27.6
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEcc
Q 005216 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (708)
Q Consensus 190 ~TVlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 229 (708)
-.|.|.|+|.+.++ +.|++.|+++ |.|.+|.+..+
T Consensus 29 L~I~V~NL~~~vte---~~L~~lFs~y--G~V~~V~i~~~ 63 (130)
T 3zzy_A 29 LRIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFTK 63 (130)
T ss_dssp EEEEEESCCSCCCH---HHHHHHHTTS--SCEEEEEEEEE
T ss_pred EEEEECCCCCCCCH---HHHHHHHhCc--CCEEEEEEEcC
Confidence 46779999987664 7899999988 67888877654
No 228
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.39 E-value=47 Score=27.56 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred CcEEEEEecCHHHHHHHHH
Q 005216 295 LQAAFVSFKSRYGAAIAFH 313 (708)
Q Consensus 295 ~~~AFVtF~s~~~a~~a~q 313 (708)
.+.+||||++.++|..|.+
T Consensus 58 ~d~~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD 76 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH
T ss_pred cCcEEEEEcChHHHHHHHh
No 229
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.83 E-value=78 Score=27.45 Aligned_cols=32 Identities=3% Similarity=-0.005 Sum_probs=25.2
Q ss_pred EEEeccCCCCCCchHHHHHHHhhhhCCCcceEEEEEc
Q 005216 192 VLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (708)
Q Consensus 192 Vlv~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 228 (708)
|.|.|+|.+.++ +.|++.|+++ |.|.++.+..
T Consensus 28 l~V~NL~~~vt~---~~L~~~Fs~y--G~V~~v~i~~ 59 (124)
T 2e5i_A 28 LSIQNPLYPITV---DVLYTVCNPV--GKVQRIVIFK 59 (124)
T ss_dssp EEEESCCSCCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred EEEcCcCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 458999987663 7899999988 6788887754
No 230
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.47 E-value=92 Score=25.96 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=27.1
Q ss_pred CCcceEEEEeccCCCC----C----CchHHHHHHHhhhhCCCcceEEEE
Q 005216 186 QPHQFTVLVRSIPVSA----G----STIGDTVENFFKEFHPTTYLSHTV 226 (708)
Q Consensus 186 ~~~~~TVlv~~IP~~~----~----~~~~~~l~~~f~~~~p~~v~~v~i 226 (708)
.....||.++|+.... + +.+.+.|+++|+++ |.|.++.+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 3457899999995422 1 12457899999987 56777755
No 231
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=21.18 E-value=2.9e+02 Score=23.66 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHhhh
Q 005216 232 NLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYGKRLENIEENSRLERSEV 288 (708)
Q Consensus 232 ~L~~L~~~~~~~~~~le~~~~k~~~rPk~g~kvd~i~~~~~~i~~l~~~I~~~~~~~ 288 (708)
++.+|-.+-++..+++...... ...+.|.-+++|++.++.+|+..+...
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~r--------gd~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLV--------EAADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT--------TCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666654331 123568888999999999999877643
No 232
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.03 E-value=1.3e+02 Score=17.90 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 005216 271 GKRLENIEENSRLERSEV 288 (708)
Q Consensus 271 ~~~i~~l~~~I~~~~~~~ 288 (708)
-++++++++++++.|++.
T Consensus 7 ykeledlqerlrklrkkl 24 (27)
T 3twe_A 7 YKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 357778888888777754
Done!