BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005217
(708 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain-
Containing Protein 1 (Putative Splicing Factor Yt521)
Length = 180
Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 453 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 512
DA+FF+IKS + ++V + VW++ P KKL+ A++ A+ V L+FSV SG
Sbjct: 25 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 78
Query: 513 QFVGLAEMAGPVDFNKNVEYW------QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNE 566
+F G A ++ + +W G F + W +++P + H+T NE
Sbjct: 79 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 138
Query: 567 NKPVTNSRDTQEIKLEQGLKLIKIF 591
+KPV RD QEI+LE G +L +F
Sbjct: 139 HKPVKIGRDGQEIELECGTQLCLLF 163
>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain-
Containing Protein 2
Length = 141
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 455 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQF 514
++F++KS + ++ S + +W++TP+ +KL+ A+ E S V+L+FSV SG F
Sbjct: 9 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWE------SSIVYLVFSVQGSGHF 62
Query: 515 VGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSR 574
G + M+ + K+ + W G F V+W + +P H+ N+NK V SR
Sbjct: 63 QGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISR 121
Query: 575 DTQEIKLEQGLKLIKIFK 592
D QE++ + G +L+++++
Sbjct: 122 DGQELEPQVGEQLLQLWE 139
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 437 PDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQK 496
P R + F ++T VI+ Y+ ++ +IK+SVW TP G K L +
Sbjct: 157 PVRQKEFSKTFKRQFTKC-LTVIQGYAI--INAAIKFSVWNITPKGKKNLILSTMRNSSM 213
Query: 497 SRSCPVFLLFSVNTSGQFVGLAEMAGPVDFN 527
++ SV +G GL E+ +D N
Sbjct: 214 RKNIS-----SVFGAGGMRGLEEVDLVLDLN 239
>pdb|4EE2|A Chain A, Crystal Structure Of Anthrax Protective Antigen K446m
Mutant To 1.91-A Resolution
Length = 736
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 531 EYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQG-LKLIK 589
+Y+Q W+G VK S H+T+ ++ + + + ++ +I+LE+G L IK
Sbjct: 59 QYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIK 118
Query: 590 I--FKDHPSKTCILDDFGFYET 609
I +++P++ + DF Y T
Sbjct: 119 IQYQRENPTEKGL--DFKLYWT 138
>pdb|3Q8C|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 5.5)
pdb|3Q8E|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 8.5)
Length = 735
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 531 EYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQG-LKLIK 589
+Y+Q W+G VK S H+T+ ++ + + + ++ +I+LE+G L IK
Sbjct: 58 QYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIK 117
Query: 590 I--FKDHPSKTCILDDFGFYET 609
I +++P++ + DF Y T
Sbjct: 118 IQYQRENPTEKGL--DFKLYWT 137
>pdb|1T6B|X Chain X, Crystal Structure Of B. Anthracis Protective Antigen
Complexed With Human Anthrax Toxin Receptor
pdb|3Q8A|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 5.5)
pdb|3Q8B|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 9.0)
Length = 735
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 531 EYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQG-LKLIK 589
+Y+Q W+G VK S H+T+ ++ + + + ++ +I+LE+G L IK
Sbjct: 58 QYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIK 117
Query: 590 I--FKDHPSKTCILDDFGFYET 609
I +++P++ + DF Y T
Sbjct: 118 IQYQRENPTEKGL--DFKLYWT 137
>pdb|1ACC|A Chain A, Anthrax Protective Antigen
Length = 735
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 531 EYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQG-LKLIK 589
+Y+Q W+G VK S H+T+ ++ + + + ++ +I+LE+G L IK
Sbjct: 58 QYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVINKASNSNKIRLEKGRLYQIK 117
Query: 590 I--FKDHPSKTCILDDFGFYET 609
I +++P++ + DF Y T
Sbjct: 118 IQYQRENPTEKGL--DFKLYWT 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,164,362
Number of Sequences: 62578
Number of extensions: 890176
Number of successful extensions: 1202
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 10
length of query: 708
length of database: 14,973,337
effective HSP length: 106
effective length of query: 602
effective length of database: 8,340,069
effective search space: 5020721538
effective search space used: 5020721538
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)