Query 005217
Match_columns 708
No_of_seqs 199 out of 365
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 19:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1901 Uncharacterized high-g 100.0 3.8E-83 8.3E-88 691.5 34.2 459 91-623 3-468 (487)
2 PF04146 YTH: YT521-B-like dom 100.0 2.8E-48 6.1E-53 363.3 9.0 136 453-594 1-140 (140)
3 KOG1902 Putative signal transd 100.0 4.7E-41 1E-45 349.6 11.7 149 440-596 60-213 (441)
4 PRK00809 hypothetical protein; 94.1 0.21 4.6E-06 48.4 7.9 122 455-588 2-142 (144)
5 PF01878 EVE: EVE domain; Int 81.4 3.5 7.5E-05 38.9 5.8 128 455-590 1-143 (143)
6 PF03875 Statherin: Statherin; 42.4 24 0.00053 28.1 2.5 28 126-164 14-41 (42)
7 PRK02268 hypothetical protein; 42.4 1.5E+02 0.0032 29.4 8.5 122 455-592 3-137 (141)
8 PF10539 Dev_Cell_Death: Devel 35.8 70 0.0015 31.3 5.1 116 462-591 8-130 (130)
9 KOG0260 RNA polymerase II, lar 28.1 1.6E+03 0.034 30.0 18.4 8 136-143 1438-1445(1605)
10 smart00767 DCD DCD is a plant 15.4 4.4E+02 0.0094 26.2 6.2 84 504-592 43-131 (132)
No 1
>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]
Probab=100.00 E-value=3.8e-83 Score=691.49 Aligned_cols=459 Identities=44% Similarity=0.666 Sum_probs=327.8
Q ss_pred CCCCCCccccccccCCCCCCcccccCCCcccc-ccCCCC--CCCCCCCCCCCCCCcCCCCCccccCCCCCCC-CCCCCCC
Q 005217 91 NVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMY-HHGYGY--APYPPYSPATSPVPTMGTDGQLYGPQHYQYP-HYFQPIT 166 (708)
Q Consensus 91 ~~~~W~~y~~Yvn~dg~e~~~gvy~dn~Sl~y-~~Gygy--~pYg~Ysp~~sP~p~~g~DgQlyg~q~y~yp-~yyq~~~ 166 (708)
.+.+ ++|+-|.|.|++.+. ++.+.+.+++. ...+++ .||.|+++ .++++|.|++++.+|++++. ++|-
T Consensus 3 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~~~~~~~~~--- 74 (487)
T KOG1901|consen 3 SGLY-TDYGVVSNSESVQPD-GGQGQESANTSYPTSLGYHSFPYNPSSY---AASSLGSDGSLGEPQQNPLYSPSYG--- 74 (487)
T ss_pred CCCc-CCccccccCcccccC-CccCCCcccccCCccccccCCCCCCCcc---cccCCCCCccccccccccccCCCcC---
Confidence 4456 899999999994434 44555555444 333333 23444433 34588999999999999997 5554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCcccccCCCCCCcccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005217 167 PTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPA 246 (708)
Q Consensus 167 ~~~~~y~~s~~~~~q~e~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~~~~~~~~~~p~~~~~~s~gsyg~g~~~~~~p~ 246 (708)
+...|+........++++....... ...+..+. +. +.+..|... ..+.++ ..-+.+.|.
T Consensus 75 ~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------~~--~~~~~p~~~---~~~~~~-~~~~~~~~~ 133 (487)
T KOG1901|consen 75 PVSLPTASTSGSSTFSNLTLRKAPG---FSSSGPKQ------------GG--SMPSDPRGS---AQRNSS-ISASPGYPP 133 (487)
T ss_pred cccCccccccCcccccchhhhcccc---cccccccc------------Cc--CCCCCCccc---cccccc-ccCCCCCCC
Confidence 2223333333333344443322221 01111111 10 122222221 111121 122223444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCcC
Q 005217 247 SGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMG-AAQGFM 325 (708)
Q Consensus 247 ~gy~~~~~~~dg~~~~~~w~d~~~~s~~~~~~~~~~s~s~~~~~~~~~~~nq~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 325 (708)
.+|.+|++.++..... +..++..+.+++.+....+.+.++ ...+|+
T Consensus 134 ~~~~~P~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 180 (487)
T KOG1901|consen 134 LPYSAPKFASDLIPGK---------------------------------PPPPISGNTGPPTPDSKGPVSSSGHNAQGYY 180 (487)
T ss_pred cccCCCccccccccCC---------------------------------CCCCccccCCCCCcccCCcccCCcccccccc
Confidence 5777777666541100 111222222333333333333332 345666
Q ss_pred ccCccCC-CcccccCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCccCCCC-CCccccccccCCCCCCCCC
Q 005217 326 NMNRMYP-NKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGN-ENMDGLNELNRGPRAKGAK 403 (708)
Q Consensus 326 ~~~~~y~-~~~y~~~g~~~~~~~~~g~~~~~~~~~~r~w~~~~~k~~~~~~~~~~~~~~~-~~~d~~~e~nrgpr~~~~~ 403 (708)
+.++. .+.|+.+..+...+..|+...+.....+|+|..+++..+..+.. ......+ ...+.++|+|||||+...+
T Consensus 181 --~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nrg~~s~~~~ 257 (487)
T KOG1901|consen 181 --DQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWGIN-YPRLPSDEAGSDSLNEQNRGPRSSDSR 257 (487)
T ss_pred --cccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCccccccc-CCCccccccccccccccccCccccccc
Confidence 55555 34565566555568889999999889999999999765544422 2222333 2378899999999999999
Q ss_pred CCCCCCCCcccccccccccCCCCcccCCcccCCCCcccCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCchH
Q 005217 404 NQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGN 483 (708)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~df~~~y~~ARFFIIKS~nedNIhkSIKyGVWaSTp~nn 483 (708)
++.........+...+. .+...+++++++||+++|...|.+||||||||++|||||+||||+|||+|+++|
T Consensus 258 ~~~~~~~~~~~~~~~s~---------~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GN 328 (487)
T KOG1901|consen 258 GQDINSSGPTEAGSASA---------PESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGN 328 (487)
T ss_pred CccccCCcchhcccccc---------ccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCCc
Confidence 88755543333322111 111256889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchhhccccCCCccceeEEEeecCCCccccccccC
Q 005217 484 KKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE 563 (708)
Q Consensus 484 kKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpVDf~ks~d~WqqdKw~G~F~VkWi~vkDVPf~~lrHI~N~ 563 (708)
||||+|||+++.|.++||||||||||+||||||+|||++||||+++++||+||||.|.|+||||+||||||..||||+++
T Consensus 329 KkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~Le 408 (487)
T KOG1901|consen 329 KKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIILE 408 (487)
T ss_pred hhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEee
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeecCCCcccchHHHHHHHHHHhcCCCCcccccchhhhHHHHHHHHHHHHHhhh
Q 005217 564 NNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQKTIQEKKAKQQQ 623 (708)
Q Consensus 564 ~NENKPVt~SRDgQEIe~e~G~qLLkIF~~~~~~tSILDDF~~Ye~rek~~~e~r~~~~~ 623 (708)
+|||||||++||+|||.+++|++||+||+++.++|||||||.|||+||+.|+++|+|+..
T Consensus 409 NNeNKPVTnSRDTQEV~leqGievlkIfk~y~~~TSiLDDf~~Ye~rq~~~~~~k~r~~~ 468 (487)
T KOG1901|consen 409 NNENKPVTNSRDTQEVPLEQGIEVLKIFKSYAAKTSILDDFGFYEERQKIIQDKKARQPP 468 (487)
T ss_pred cCCCCCcccccccceecHHHHHHHHHHHHhhcceeeecccccchHHHHHHhhhcccccCc
Confidence 999999999999999999999999999999999999999999999999999999998864
No 2
>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.
Probab=100.00 E-value=2.8e-48 Score=363.32 Aligned_cols=136 Identities=50% Similarity=0.887 Sum_probs=114.3
Q ss_pred CceEEEEecCChhhHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchh
Q 005217 453 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEY 532 (708)
Q Consensus 453 ~ARFFIIKS~nedNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpVDf~ks~d~ 532 (708)
++|||||||+|++|||+|+++|||+|+++++++|++||+++ ++||||||||+||+|||||+|+|+++++....+
T Consensus 1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~------~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~ 74 (140)
T PF04146_consen 1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKES------RNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF 74 (140)
T ss_dssp --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHS------S-EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhC------CCEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence 57999999999999999999999999999999999999998 389999999999999999999999999998999
Q ss_pred hc----cccCCCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 005217 533 WQ----QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 594 (708)
Q Consensus 533 Wq----qdKw~G~F~VkWi~vkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF~~~ 594 (708)
|. ..+|.|.|+|+||++++|||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~~G~~l~~~f~~~ 140 (140)
T PF04146_consen 75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPEIGEQLLKIFDNQ 140 (140)
T ss_dssp --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CCHHHHHHHHCGT-
T ss_pred ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHHHHHHHHHHHhhC
Confidence 95 469999999999999999999999999999999999999999999999999999999864
No 3
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=100.00 E-value=4.7e-41 Score=349.63 Aligned_cols=149 Identities=36% Similarity=0.615 Sum_probs=138.6
Q ss_pred ccCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEE
Q 005217 440 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAE 519 (708)
Q Consensus 440 ~qyN~~df~~~y~~ARFFIIKS~nedNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~Ae 519 (708)
+++++...+. ..+|||||||.|.+||.+|++.|||+||+.|++||+.||+++ ..||||||||.||||||||+
T Consensus 60 ~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~Ar 131 (441)
T KOG1902|consen 60 DQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFAR 131 (441)
T ss_pred hhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhhh
Confidence 5666665554 688999999999999999999999999999999999999998 48999999999999999999
Q ss_pred ecCCCCCCCCchhhcc-----ccCCCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 005217 520 MAGPVDFNKNVEYWQQ-----DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 594 (708)
Q Consensus 520 M~SpVDf~ks~d~Wqq-----dKw~G~F~VkWi~vkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF~~~ 594 (708)
|+|+|...++-..|.+ ..|++.|+||||++++|||.++.||+|+|||||||++|||||||++++|+|||.|+...
T Consensus 132 MsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~~~ 211 (441)
T KOG1902|consen 132 MSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLPPD 211 (441)
T ss_pred hcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcCCC
Confidence 9999998888777865 67999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 005217 595 PS 596 (708)
Q Consensus 595 ~~ 596 (708)
++
T Consensus 212 p~ 213 (441)
T KOG1902|consen 212 PS 213 (441)
T ss_pred cc
Confidence 64
No 4
>PRK00809 hypothetical protein; Provisional
Probab=94.08 E-value=0.21 Score=48.42 Aligned_cols=122 Identities=11% Similarity=0.158 Sum_probs=74.7
Q ss_pred eEEEEecCChhhHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC------CCCCeeEEEEecCCCCCCC
Q 005217 455 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVDFNK 528 (708)
Q Consensus 455 RFFIIKS~nedNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN------~SGqFqG~AeM~SpVDf~k 528 (708)
+|+|+=+ |+||+.+....|||-.....-.-|.+ . .....+||++-+ .-..|.|+|++++..-.+.
T Consensus 2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr~----M----k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~ 72 (144)
T PRK00809 2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIEK----V----KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS 72 (144)
T ss_pred ceEEEec-CHHHHHHHHhCCEeecchhhhhHHhh----C----CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence 6777766 99999999999999996442222221 1 134678888887 5789999999998752222
Q ss_pred Cchhhc------cccCCCccceeEEEeec--CCCcccc-c---cccCCCCCCce-eecCCCcccchHHHHHHH
Q 005217 529 NVEYWQ------QDKWTGCFPVKWHIVKD--VPNSLLK-H---ITLENNENKPV-TNSRDTQEIKLEQGLKLI 588 (708)
Q Consensus 529 s~d~Wq------qdKw~G~F~VkWi~vkD--VPf~~lr-H---I~N~~NENKPV-t~SRDgQEIe~e~G~qLL 588 (708)
+ .+|. .+.+--..+|+++.+.+ ||...|. + |++.-.=...+ ..+| .||..+....|+
T Consensus 73 t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L~fik~~~~w~~~l~R~~~--~~I~~~d~~~I~ 142 (144)
T PRK00809 73 T-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPLIPKLKFIENKKQWSGHLRNRAM--RPIPEEDYKLIE 142 (144)
T ss_pred c-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHHHhhhhhhhcccccchhhhcCCC--ccCCHHHHHHHh
Confidence 2 2332 12222467899998878 7766551 1 12211001222 4555 777777665554
No 5
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=81.35 E-value=3.5 Score=38.88 Aligned_cols=128 Identities=14% Similarity=0.209 Sum_probs=62.5
Q ss_pred eEEEEecC----ChhhHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCCCCCC--
Q 005217 455 KFFVIKSY----SEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPVDFN-- 527 (708)
Q Consensus 455 RFFIIKS~----nedNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SGqFqG~AeM~SpVDf~-- 527 (708)
+|+|+|+. +-+++ .-.+..+|.-..+...+- .+++.+ ...-+||+.-+ +.+.|.|+++.++..-.+
T Consensus 1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk----~GD~vifY~s~~~~~~ivai~~V~~~~~~d~~ 73 (143)
T PF01878_consen 1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK----PGDKVIFYHSGCKERGIVAIGEVVSEPYPDPT 73 (143)
T ss_dssp -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC------TT-EEEEEETSSSS-EEEEEEEEEEEEEE-GG
T ss_pred CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC----CCCEEEEEEcCCCCCEEEEEEEEeccccCCCc
Confidence 68999998 76666 444455555443322222 444432 24567777766 689999999999864221
Q ss_pred ---CCchhhcccc--CCCccceeEEEeec--CCCccccccccCCCCCCceeec-CCCcccchHHHHHHHHH
Q 005217 528 ---KNVEYWQQDK--WTGCFPVKWHIVKD--VPNSLLKHITLENNENKPVTNS-RDTQEIKLEQGLKLIKI 590 (708)
Q Consensus 528 ---ks~d~WqqdK--w~G~F~VkWi~vkD--VPf~~lrHI~N~~NENKPVt~S-RDgQEIe~e~G~qLLkI 590 (708)
....++.... .....+|+++.+-+ |+...|+.. ..+.+-.-+++. .--.+|..+.-..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~-~~l~~l~~i~~~r~s~~~it~~~~~~I~~~ 143 (143)
T PF01878_consen 74 AFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAE-PELENLSFIRNKRLSVFPITEEDFEAIMEM 143 (143)
T ss_dssp GTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC--GGGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred cccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcC-CccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence 1112122111 22356788886544 444555432 011111112222 23356666666666553
No 6
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=42.39 E-value=24 Score=28.13 Aligned_cols=28 Identities=46% Similarity=0.928 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCC
Q 005217 126 YGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQP 164 (708)
Q Consensus 126 ygy~pYg~Ysp~~sP~p~~g~DgQlyg~q~y~yp~yyq~ 164 (708)
|+|.-|||| -|+|-- -|| +|.|| |+|||
T Consensus 14 ~~~grygpy----qp~peq----~ly-pqpyq--p~yqq 41 (42)
T PF03875_consen 14 FFYGRYGPY----QPFPEQ----PLY-PQPYQ--PPYQQ 41 (42)
T ss_pred hcccccCCc----CCCCCC----cCC-CCCCC--Ccccc
Confidence 344446777 455542 266 66555 44553
No 7
>PRK02268 hypothetical protein; Provisional
Probab=42.35 E-value=1.5e+02 Score=29.39 Aligned_cols=122 Identities=10% Similarity=0.129 Sum_probs=69.2
Q ss_pred eEEEEecCChhhHHHHhhcCeeecCCchHH-HHHHHHHHHHhhcCCCCEEEEEEeC-------CCCCeeEEEEecCCCCC
Q 005217 455 KFFVIKSYSEDDVHKSIKYSVWASTPNGNK-KLDAAYQEAQQKSRSCPVFLLFSVN-------TSGQFVGLAEMAGPVDF 526 (708)
Q Consensus 455 RFFIIKS~nedNIhkSIKyGVWaSTp~nnk-KLn~AFrea~~k~~~~pVfLfFSVN-------~SGqFqG~AeM~SpVDf 526 (708)
+|.| =.-|+||+.+.++.|+|-.. |+.+ -|.+ - ....-+|++|=. .=..|.+++++++.--+
T Consensus 3 ~yWI-~v~s~~hv~~g~~~gf~qv~-hgK~apl~R----m----kpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Y 72 (141)
T PRK02268 3 RYWI-GVVSAEHVRRGVEGGFMQVC-HGKAAPLRR----M----KPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPY 72 (141)
T ss_pred ceEE-EEccHHHHHHHHhCCEEEeC-CCccchhhc----C----CCCCEEEEEeceEecCCCcccceEEEEEEEcCCceE
Confidence 4553 35679999999999999774 4433 1221 1 123567777722 34689999999986322
Q ss_pred CCCchhhccccCC-CccceeEEEeecCCCccc----cccccCCCCCCceeecCCCcccchHHHHHHHHHHh
Q 005217 527 NKNVEYWQQDKWT-GCFPVKWHIVKDVPNSLL----KHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFK 592 (708)
Q Consensus 527 ~ks~d~WqqdKw~-G~F~VkWi~vkDVPf~~l----rHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF~ 592 (708)
...+. ..|. =.++|+|+.+.++|++-| ++|++.-+=.... -.---||.-+-.+.+.+.+.
T Consensus 73 q~~m~----~~f~P~Rr~v~~~~~~e~pi~pLi~~L~Fi~~k~~Wg~~f--r~g~~eI~e~Df~~I~~am~ 137 (141)
T PRK02268 73 QVEMA----PGFIPWRRDVDYYPCAETPIRPLLDHLDFTEDRKNWGYQF--RFGHFEISKHDFETIASAMT 137 (141)
T ss_pred ecccC----CCceeEEEEeeEeecCccchHHhhcccceeeCcchhhHhh--cCCcEecCHHHHHHHHHHhc
Confidence 21110 0111 135799999999998754 3443322211122 11236676666655555543
No 8
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=35.83 E-value=70 Score=31.32 Aligned_cols=116 Identities=15% Similarity=0.265 Sum_probs=77.6
Q ss_pred CChhhHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCCchhhcccc----
Q 005217 462 YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDK---- 537 (708)
Q Consensus 462 ~nedNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpVDf~ks~d~WqqdK---- 537 (708)
+|.+-+....++.+.-....... |-+. ...+-++|||= -..++..|+=|-+|.-..+....-|..+.
T Consensus 8 Cn~~T~~ECf~~~lFGLP~~~~~-----~V~~--I~pG~~LFLfn--~~~r~L~GifeA~S~G~~ni~p~Af~~~~~~~~ 78 (130)
T PF10539_consen 8 CNNKTKPECFRRQLFGLPAGHKD-----FVKK--IKPGMPLFLFN--YSDRKLYGIFEATSDGGMNIEPYAFSGSGSGES 78 (130)
T ss_pred ECCCCHHHHHhcccccCChhhhh-----HHhe--eCCCCEEEEEE--cCCCEEEEEEEecCCCccCcChhhhCCCCCCCc
Confidence 34455666777777777654322 1111 12345677642 36789999999999887777777787633
Q ss_pred -C--CCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHH
Q 005217 538 -W--TGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIF 591 (708)
Q Consensus 538 -w--~G~F~VkWi~vkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF 591 (708)
+ .=.|.|.| .+..||-+.++|++-+|=.+ ..+=-.||...+.+.||.||
T Consensus 79 ~fPAQVrf~i~~-~C~PL~E~~fk~aI~~Ny~~----~~kF~~eLs~~Qv~~L~~LF 130 (130)
T PF10539_consen 79 PFPAQVRFRIRW-DCPPLPESQFKPAIKDNYYD----KNKFRFELSHQQVRKLLSLF 130 (130)
T ss_pred ccceEEEEEEee-eeecCCHHHHHHHHHHhCCC----CCcccCcCCHHHHHHHHHhC
Confidence 2 22577777 56689999999998543211 12446899999999999997
No 9
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=28.12 E-value=1.6e+03 Score=30.00 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.1
Q ss_pred CCCCCCCc
Q 005217 136 PATSPVPT 143 (708)
Q Consensus 136 p~~sP~p~ 143 (708)
-++||.+.
T Consensus 1438 ~~~sp~~s 1445 (1605)
T KOG0260|consen 1438 SPASPGSS 1445 (1605)
T ss_pred CCCCCCCC
Confidence 33344433
No 10
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=15.38 E-value=4.4e+02 Score=26.17 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=0.0
Q ss_pred EEEEeCCCCCeeEEEEecCCCCCCCCchhhccccCCCccc--eeEEE---eecCCCccccccccCCCCCCceeecCCCcc
Q 005217 504 LLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFP--VKWHI---VKDVPNSLLKHITLENNENKPVTNSRDTQE 578 (708)
Q Consensus 504 LfFSVN~SGqFqG~AeM~SpVDf~ks~d~WqqdKw~G~F~--VkWi~---vkDVPf~~lrHI~N~~NENKPVt~SRDgQE 578 (708)
||.=--...++.|+=+-+|.--.+....-|...+ ...|+ |++.+ ++.|+-+.|++.+.+|=.++ .+=-.|
T Consensus 43 LFLfn~~~r~L~GifeA~S~G~~ni~p~Af~~~~-~s~fPaQVrf~i~~~C~PL~E~~f~~aI~~nY~~~----~kF~~e 117 (132)
T smart00767 43 LFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKK-ESRFPAQVRFRIRKDCKPLPESEFRSAILENYDGP----SKFRFE 117 (132)
T ss_pred EEEEecCCceeeeEEEeccCCcCCcChhHhcCCC-CCccCcEEEEEEeeeecCCCHHHHHHHHHHhCcCC----cccccc
Q ss_pred cchHHHHHHHHHHh
Q 005217 579 IKLEQGLKLIKIFK 592 (708)
Q Consensus 579 Ie~e~G~qLLkIF~ 592 (708)
|...+-+.|+.||.
T Consensus 118 Ls~~Qv~~L~~LF~ 131 (132)
T smart00767 118 LSHAQVLRLLDLFA 131 (132)
T ss_pred CCHHHHHHHHHHhc
Done!