Query 005217
Match_columns 708
No_of_seqs 199 out of 365
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:55:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yud_A YTH domain-containing p 100.0 3.6E-54 1.2E-58 418.2 9.4 166 434-614 8-179 (180)
2 2yu6_A YTH domain-containing p 100.0 3.1E-52 1.1E-56 390.8 11.3 138 450-594 4-141 (141)
3 2hd9_A UPF0310 protein PH1033; 96.3 0.0087 3E-07 56.2 7.4 125 455-591 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 94.9 0.04 1.4E-06 51.8 6.5 125 454-590 4-147 (147)
5 2eve_A Hypothetical protein ps 55.1 22 0.00075 34.3 6.4 130 455-594 2-152 (157)
6 3eop_A Thymocyte nuclear prote 37.2 30 0.001 34.0 4.3 131 455-592 2-168 (176)
7 2ar1_A Hypothetical protein; s 24.0 1.1E+02 0.0037 29.9 5.7 75 453-534 18-102 (172)
8 3goe_A DNA repair protein RAD6 15.2 1.2E+02 0.004 26.6 3.3 45 456-506 11-55 (82)
9 2jvf_A De novo protein M7; tet 10.4 43 0.0015 29.1 -0.8 15 569-583 9-23 (96)
10 3ia2_A Arylesterase; alpha-bet 8.3 1E+02 0.0035 28.3 0.8 27 101-127 3-29 (271)
No 1
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3.6e-54 Score=418.17 Aligned_cols=166 Identities=31% Similarity=0.531 Sum_probs=156.3
Q ss_pred cCCCCcccCCCCCCCCCCCCceEEEEecCChhhHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCC
Q 005217 434 SLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 513 (708)
Q Consensus 434 ~~~~~~~qyN~~df~~~y~~ARFFIIKS~nedNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGq 513 (708)
...+++++||+.++.. +++|||||||++++|||+||+||||+||++||++|++||+++ .+||||||||+||+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~------~~V~L~FSVn~Sg~ 79 (180)
T 2yud_A 8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSA------RSVILIFSVRESGK 79 (180)
T ss_dssp CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHS------SCEEEEEEETTTSE
T ss_pred hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhC------CeEEEEEEeCCCCc
Confidence 3466789999988774 899999999999999999999999999999999999999997 48999999999999
Q ss_pred eeEEEEecCCCCCCCCchhhc------cccCCCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHH
Q 005217 514 FVGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKL 587 (708)
Q Consensus 514 FqG~AeM~SpVDf~ks~d~Wq------qdKw~G~F~VkWi~vkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qL 587 (708)
|||||||+++++++....+|+ +++|+|.|+|+||+++||||..++||+|+|||||||+++||||||++++|++|
T Consensus 80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L 159 (180)
T 2yud_A 80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 159 (180)
T ss_dssp EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHH
T ss_pred EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHH
Confidence 999999999999988888996 46799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccccchhhhHHHHHHH
Q 005217 588 IKIFKDHPSKTCILDDFGFYETRQKTI 614 (708)
Q Consensus 588 LkIF~~~~~~tSILDDF~~Ye~rek~~ 614 (708)
|+||+.+ ++++||+.|+|+.
T Consensus 160 ~~lf~~~-------~~~~~~~~~~~~~ 179 (180)
T 2yud_A 160 CLLFPPD-------ESIDLYQVIHKMR 179 (180)
T ss_dssp HHHSCCC-------SSSCSHHHHHHHH
T ss_pred HHhcccC-------cCccHHHHHHhhc
Confidence 9999986 5799999999874
No 2
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=3.1e-52 Score=390.84 Aligned_cols=138 Identities=28% Similarity=0.551 Sum_probs=132.7
Q ss_pred CCCCceEEEEecCChhhHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCC
Q 005217 450 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 529 (708)
Q Consensus 450 ~y~~ARFFIIKS~nedNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpVDf~ks 529 (708)
...++|||||||+++||||+|++||||+||++||++|++||+++ .+||||||||+||+|||||+|++++|+ ..
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~------~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~ 76 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWES------SIVYLVFSVQGSGHFQGFSRMSSEIGR-EK 76 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHS------SCEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcC------CcEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence 35789999999999999999999999999999999999999998 399999999999999999999999999 56
Q ss_pred chhhccccCCCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 005217 530 VEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 594 (708)
Q Consensus 530 ~d~WqqdKw~G~F~VkWi~vkDVPf~~lrHI~N~~NENKPVt~SRDgQEIe~e~G~qLLkIF~~~ 594 (708)
..+|++++|+|.|+|+||+++||||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~~ 141 (141)
T 2yu6_A 77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL 141 (141)
T ss_dssp CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGTC
T ss_pred CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhhC
Confidence 67899999999999999999999999999999999999999999999999999999999999874
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=96.25 E-value=0.0087 Score=56.18 Aligned_cols=125 Identities=11% Similarity=0.173 Sum_probs=81.3
Q ss_pred eEEEEecCChhhHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeCCC--------CCeeEEEEecCCCCC
Q 005217 455 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDF 526 (708)
Q Consensus 455 RFFIIKS~nedNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~S--------GqFqG~AeM~SpVDf 526 (708)
+|.|+|| +.|++...++.|+|-. .+..+..-++ - .....+||++-+.. ..|.|++++++..-.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~---m----k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSR---V----KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTT---C----CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHh---C----CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 6899998 8999999999999977 5554432221 1 23467888887765 799999999985532
Q ss_pred CCCchhhccccC-----CCccceeEEEeecCCCccccccccCCCCC-----CceeecCCCcccchHHHHHHHHHH
Q 005217 527 NKNVEYWQQDKW-----TGCFPVKWHIVKDVPNSLLKHITLENNEN-----KPVTNSRDTQEIKLEQGLKLIKIF 591 (708)
Q Consensus 527 ~ks~d~WqqdKw-----~G~F~VkWi~vkDVPf~~lrHI~N~~NEN-----KPVt~SRDgQEIe~e~G~qLLkIF 591 (708)
+.+ .+|-+.+| --...|+++.+..|++..++. .+.+=.| ..+ .-+--++|..+....||+.+
T Consensus 73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 221 12222222 123568888889998877664 3332111 111 02337999999999998764
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=94.94 E-value=0.04 Score=51.78 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=77.3
Q ss_pred ceEEEEecCChhhHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC------CCCCeeEEEEecCCCC--
Q 005217 454 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVD-- 525 (708)
Q Consensus 454 ARFFIIKS~nedNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN------~SGqFqG~AeM~SpVD-- 525 (708)
.+|.|+|+- ++++...++.|+|-. .+..+.+-++ - .....+||+... .-..|.|++++++..-
T Consensus 4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr~---M----k~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D 74 (147)
T 2p5d_A 4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTINK---V----KVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD 74 (147)
T ss_dssp CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHTT---C----CTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred ccceeeecC-HHHHHHHHHcCeeec-CHHHHHHHHh---C----CCCCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence 479999886 677999999999966 4444332221 1 123566777332 3458999999998542
Q ss_pred ---CCCCchhhccccCCCccceeEEEe--ecCCCcccc----ccccC--CCCCCceeecCCCcccchHHHHHHHHH
Q 005217 526 ---FNKNVEYWQQDKWTGCFPVKWHIV--KDVPNSLLK----HITLE--NNENKPVTNSRDTQEIKLEQGLKLIKI 590 (708)
Q Consensus 526 ---f~ks~d~WqqdKw~G~F~VkWi~v--kDVPf~~lr----HI~N~--~NENKPVt~SRDgQEIe~e~G~qLLkI 590 (708)
|+....|...+..--..+|+|+.. +.||...|+ +|++. |.+ .-|..+ -++|..+.-..||++
T Consensus 75 ~t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 75 SSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CCCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS--EEEECHHHHHHHHTC
T ss_pred CcccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC--ceECCHHHHHHHHhC
Confidence 222222221221223688999987 888887777 22222 222 224555 899999998888853
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=55.14 E-value=22 Score=34.33 Aligned_cols=130 Identities=14% Similarity=0.322 Sum_probs=75.5
Q ss_pred eEEEEec----CChhhHHHHhhcCeeecCCchHH-HHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCC-----
Q 005217 455 KFFVIKS----YSEDDVHKSIKYSVWASTPNGNK-KLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGP----- 523 (708)
Q Consensus 455 RFFIIKS----~nedNIhkSIKyGVWaSTp~nnk-KLn~AFrea~~k~~~~pVfLfFSVN-~SGqFqG~AeM~Sp----- 523 (708)
+|.++|| |+.||+.. -+...|.-..+-.. .+- |+. ......||+.-| ....+.|+|++++.
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqArN~m---r~M----k~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~ 73 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQARNFL---RTM----AEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDP 73 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHHHHH---HHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEECG
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHHHHH---Hhc----CCCCEEEEEecCCCCCEEEEEEEEeEccCCCc
Confidence 4788886 67888887 55578975543222 111 222 123556666666 88999999999984
Q ss_pred CCCCCCchhhcc------ccCCCccceeEEEe--ecCCCccccccccCCCCCCceee-cC-CCcccchHHHHHHHHHHhc
Q 005217 524 VDFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTN-SR-DTQEIKLEQGLKLIKIFKD 593 (708)
Q Consensus 524 VDf~ks~d~Wqq------dKw~G~F~VkWi~v--kDVPf~~lrHI~N~~NENKPVt~-SR-DgQEIe~e~G~qLLkIF~~ 593 (708)
..|+....||.. -+|. .+.|+-+.. +-|+...+|... ++.+..-|+. +| --|-|..++-..||+|=.+
T Consensus 74 t~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~~~ 151 (157)
T 2eve_A 74 TALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALRLE 151 (157)
T ss_dssp GGGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHHC-
T ss_pred ccccccCcCcCcccCCCCCCEE-EEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHHhhh
Confidence 345566667732 2443 445555443 445555555331 2333334444 23 3477888888888888554
Q ss_pred C
Q 005217 594 H 594 (708)
Q Consensus 594 ~ 594 (708)
+
T Consensus 152 ~ 152 (157)
T 2eve_A 152 H 152 (157)
T ss_dssp -
T ss_pred h
Confidence 4
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=37.17 E-value=30 Score=33.99 Aligned_cols=131 Identities=17% Similarity=0.242 Sum_probs=77.0
Q ss_pred eEEEEec-------------CChhhHHHH-hhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEE
Q 005217 455 KFFVIKS-------------YSEDDVHKS-IKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAE 519 (708)
Q Consensus 455 RFFIIKS-------------~nedNIhkS-IKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SGqFqG~Ae 519 (708)
+|.++|| |+.||+... .+...|.=..+-..|-. .|+. .- ....||+--| +--.+.|+|+
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~--mR~M---k~-GD~~fFYHSnck~pgIvGi~e 75 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNF--LRAM---KL-GEEAFFYHSNCKEPGIAGLMK 75 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHH--HHHC---CT-TCEEEEEECCSSSCEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHH--HHhc---CC-CCEEEEEecCCCCCeEEEEEE
Confidence 5778886 677888765 34567886644332211 1222 12 2455555545 7889999999
Q ss_pred ecCCC-----CCCCCchhhcc------ccCCCccceeEEEe--ecCCCccccccc-------cCCCCCCceeecC-CCcc
Q 005217 520 MAGPV-----DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHIT-------LENNENKPVTNSR-DTQE 578 (708)
Q Consensus 520 M~SpV-----Df~ks~d~Wqq------dKw~G~F~VkWi~v--kDVPf~~lrHI~-------N~~NENKPVt~SR-DgQE 578 (708)
++... .|+....||.. -||. .+.|+-+.. +-|+..++|... -++.+..-|+.+| --|-
T Consensus 76 Vv~e~ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~P 154 (176)
T 3eop_A 76 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQP 154 (176)
T ss_dssp EEEEEEECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEE
T ss_pred EeeccccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCcee
Confidence 99742 35666667642 2564 466666654 346666666542 1343444455555 3466
Q ss_pred cchHHHHHHHHHHh
Q 005217 579 IKLEQGLKLIKIFK 592 (708)
Q Consensus 579 Ie~e~G~qLLkIF~ 592 (708)
|..++-..||++-+
T Consensus 155 Vt~~ew~~I~~l~~ 168 (176)
T 3eop_A 155 LTQEEFDFVLSLEE 168 (176)
T ss_dssp ECHHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHh
Confidence 77777777777744
No 7
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=23.95 E-value=1.1e+02 Score=29.94 Aligned_cols=75 Identities=27% Similarity=0.434 Sum_probs=46.7
Q ss_pred CceEEEEec----CChhhHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCCC---
Q 005217 453 DAKFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPV--- 524 (708)
Q Consensus 453 ~ARFFIIKS----~nedNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SGqFqG~AeM~SpV--- 524 (708)
.-+|.++|| |+.||+.. -....|.-..+-..+- -.++. ......||+.-| .-..+.|+|++++..
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN--~mr~M----k~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD 90 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARN--NMRAM----SVGDKVLFYHSNTKEPGVAGLAEVVRLAYDD 90 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHH--HHHHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEEC
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHH--HHHhc----CCCCEEEEEecCCCCCEEEEEEEEeeeccCC
Confidence 346999997 67888887 4446797554432211 11222 123455556555 889999999999843
Q ss_pred --CCCCCchhhc
Q 005217 525 --DFNKNVEYWQ 534 (708)
Q Consensus 525 --Df~ks~d~Wq 534 (708)
.|+....||.
T Consensus 91 ~t~fdp~s~YyD 102 (172)
T 2ar1_A 91 FTALDKTSEYFD 102 (172)
T ss_dssp GGGGCTTSTTCC
T ss_pred cccccccCcccC
Confidence 3555666764
No 8
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=15.18 E-value=1.2e+02 Score=26.64 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=33.2
Q ss_pred EEEEecCChhhHHHHhhcCeeecCCchHHHHHHHHHHHHhhcCCCCEEEEE
Q 005217 456 FFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLF 506 (708)
Q Consensus 456 FFIIKS~nedNIhkSIKyGVWaSTp~nnkKLn~AFrea~~k~~~~pVfLfF 506 (708)
-.+++|.--+|++.+|+ ......+|-+||++++..+....|.|+|
T Consensus 11 ~~~~~~~~~~dl~f~I~------~~t~v~kLi~ayc~~~~I~~~~~IrllF 55 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIP------VDFTVKDLIKRYCTEVKISFHERIRLEF 55 (82)
T ss_dssp EEEEEESSSCCEEEEEE------TTSBHHHHHHHHHHHHTCCCCTTCEEEE
T ss_pred HHhhhccCCCCeEEEec------CCCCHHHHHHHHHHHcCCCcCceEEEEE
Confidence 35566666666664443 3456789999999999887777899988
No 9
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=10.41 E-value=43 Score=29.05 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.1
Q ss_pred ceeecCCCcccchHH
Q 005217 569 PVTNSRDTQEIKLEQ 583 (708)
Q Consensus 569 PVt~SRDgQEIe~e~ 583 (708)
-|++.||||||+.++
T Consensus 9 tikiqrdgqeieidi 23 (96)
T 2jvf_A 9 TIKIQRDGQEIEIDI 23 (96)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEeeCCeEEEEEE
Confidence 578899999998653
No 10
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A
Probab=8.25 E-value=1e+02 Score=28.26 Aligned_cols=27 Identities=22% Similarity=0.615 Sum_probs=15.2
Q ss_pred ccccCCCCCCcccccCCCccccccCCC
Q 005217 101 YVSQDGVDMTSGVYGDNGSLMYHHGYG 127 (708)
Q Consensus 101 Yvn~dg~e~~~gvy~dn~Sl~y~~Gyg 127 (708)
++..||+.|.+-.+|+...+|+.||++
T Consensus 3 ~~~~~g~~l~y~~~G~g~~vvllHG~~ 29 (271)
T 3ia2_A 3 FVAKDGTQIYFKDWGSGKPVLFSHGWL 29 (271)
T ss_dssp EECTTSCEEEEEEESSSSEEEEECCTT
T ss_pred EEcCCCCEEEEEccCCCCeEEEECCCC
Confidence 455566665555555555566655554
Done!