Query 005218
Match_columns 708
No_of_seqs 638 out of 4439
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 19:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1145 Mitochondrial translat 100.0 4E-110 9E-115 894.3 54.2 583 113-705 57-680 (683)
2 PRK05306 infB translation init 100.0 3E-101 6E-106 897.2 63.7 574 112-695 211-787 (787)
3 TIGR00487 IF-2 translation ini 100.0 2E-100 3E-105 873.7 63.0 573 115-696 3-586 (587)
4 COG0532 InfB Translation initi 100.0 8E-100 2E-104 827.5 54.0 500 186-697 2-508 (509)
5 CHL00189 infB translation init 100.0 5.3E-99 1E-103 870.7 61.6 571 113-696 155-742 (742)
6 PRK04004 translation initiatio 100.0 2.8E-80 6.1E-85 708.7 50.8 474 186-697 3-562 (586)
7 TIGR00491 aIF-2 translation in 100.0 2.1E-78 4.5E-83 690.4 50.2 462 188-687 3-550 (590)
8 PRK14845 translation initiatio 100.0 5.7E-72 1.2E-76 662.8 49.1 451 202-689 474-1010(1049)
9 KOG1144 Translation initiation 100.0 2.8E-56 6E-61 489.5 32.0 473 188-685 474-1027(1064)
10 COG0486 ThdF Predicted GTPase 100.0 5.8E-50 1.3E-54 431.7 14.0 290 9-352 52-376 (454)
11 TIGR00450 mnmE_trmE_thdF tRNA 100.0 4E-45 8.6E-50 406.9 15.8 293 3-352 36-360 (442)
12 PRK05291 trmE tRNA modificatio 100.0 3.6E-45 7.8E-50 409.3 12.0 290 3-351 45-369 (449)
13 KOG1191 Mitochondrial GTPase [ 100.0 5.4E-35 1.2E-39 314.1 13.3 289 24-356 118-454 (531)
14 TIGR01394 TypA_BipA GTP-bindin 100.0 2E-29 4.2E-34 289.8 27.5 338 190-574 2-387 (594)
15 TIGR00475 selB selenocysteine- 100.0 2.9E-29 6.2E-34 288.8 24.7 235 190-428 1-242 (581)
16 PRK12317 elongation factor 1-a 100.0 4.9E-29 1.1E-33 278.6 22.5 233 188-428 5-291 (425)
17 PRK10218 GTP-binding protein; 100.0 1.6E-28 3.4E-33 282.0 26.5 254 187-444 3-292 (607)
18 PRK12736 elongation factor Tu; 100.0 1.5E-28 3.2E-33 271.7 23.6 252 186-442 9-295 (394)
19 COG5256 TEF1 Translation elong 100.0 3E-28 6.4E-33 258.8 23.7 252 188-445 6-317 (428)
20 PRK10512 selenocysteinyl-tRNA- 100.0 2.8E-28 6E-33 281.6 24.7 246 190-443 1-259 (614)
21 TIGR01393 lepA GTP-binding pro 100.0 1.1E-27 2.4E-32 276.0 28.9 298 189-520 3-326 (595)
22 PRK12735 elongation factor Tu; 100.0 5E-28 1.1E-32 267.6 23.0 251 187-442 10-297 (396)
23 TIGR00483 EF-1_alpha translati 100.0 7.8E-28 1.7E-32 268.9 23.8 233 187-427 5-292 (426)
24 KOG0462 Elongation factor-type 100.0 3.4E-28 7.5E-33 263.4 18.9 251 187-444 58-332 (650)
25 PTZ00141 elongation factor 1- 100.0 9.4E-28 2E-32 268.4 23.0 236 188-428 6-299 (446)
26 CHL00071 tufA elongation facto 100.0 8.7E-28 1.9E-32 266.8 22.6 237 187-428 10-288 (409)
27 TIGR00485 EF-Tu translation el 100.0 8.7E-28 1.9E-32 265.8 22.4 252 187-441 10-294 (394)
28 PRK05433 GTP-binding protein L 100.0 2.9E-27 6.2E-32 272.7 26.9 426 188-685 6-485 (600)
29 PRK00049 elongation factor Tu; 100.0 1.7E-27 3.7E-32 263.3 23.9 251 187-442 10-297 (396)
30 COG1217 TypA Predicted membran 100.0 1.7E-27 3.7E-32 253.4 21.9 255 188-446 4-294 (603)
31 PLN03127 Elongation factor Tu; 100.0 2.2E-27 4.8E-32 265.0 22.3 234 187-427 59-330 (447)
32 PLN03126 Elongation factor Tu; 100.0 4.1E-27 8.8E-32 264.3 22.6 236 187-427 79-356 (478)
33 COG0481 LepA Membrane GTPase L 100.0 3.6E-27 7.8E-32 251.7 20.7 327 187-523 7-383 (603)
34 PLN00043 elongation factor 1-a 100.0 5.3E-27 1.1E-31 262.2 22.9 237 187-428 5-299 (447)
35 TIGR02034 CysN sulfate adenyly 99.9 1.7E-26 3.8E-31 256.0 23.8 249 190-443 1-299 (406)
36 TIGR00484 EF-G translation elo 99.9 8.2E-26 1.8E-30 266.2 27.2 301 188-519 9-438 (689)
37 PTZ00327 eukaryotic translatio 99.9 2.2E-26 4.8E-31 256.7 20.6 236 188-428 33-329 (460)
38 PRK05124 cysN sulfate adenylyl 99.9 7.6E-26 1.6E-30 254.9 24.8 254 187-443 25-327 (474)
39 PRK00007 elongation factor G; 99.9 1.4E-25 3E-30 264.2 27.8 302 188-520 9-441 (693)
40 PRK12739 elongation factor G; 99.9 1.4E-25 2.9E-30 264.3 26.9 255 187-443 6-390 (691)
41 TIGR03680 eif2g_arch translati 99.9 7.5E-26 1.6E-30 251.1 21.9 236 188-428 3-291 (406)
42 PRK00741 prfC peptide chain re 99.9 4.3E-25 9.3E-30 250.9 26.7 338 187-570 8-463 (526)
43 PRK13351 elongation factor G; 99.9 5.1E-25 1.1E-29 259.9 26.6 254 188-443 7-389 (687)
44 PRK05506 bifunctional sulfate 99.9 2.8E-25 6E-30 259.6 23.0 252 188-445 23-325 (632)
45 PRK04000 translation initiatio 99.9 4.7E-25 1E-29 244.8 23.0 237 187-428 7-296 (411)
46 TIGR00503 prfC peptide chain r 99.9 1.3E-24 2.8E-29 247.0 26.1 338 187-570 9-464 (527)
47 PRK12740 elongation factor G; 99.9 1.2E-24 2.7E-29 256.2 25.2 295 195-520 1-420 (668)
48 COG1160 Predicted GTPases [Gen 99.9 1.1E-25 2.3E-30 243.3 12.0 290 45-358 31-357 (444)
49 COG2895 CysN GTPases - Sulfate 99.9 1.8E-24 4E-29 224.2 19.9 291 187-504 4-350 (431)
50 PF11987 IF-2: Translation-ini 99.9 5.2E-26 1.1E-30 204.8 6.6 96 484-580 13-108 (108)
51 COG3276 SelB Selenocysteine-sp 99.9 2.2E-24 4.8E-29 230.9 20.2 230 191-428 2-237 (447)
52 COG0480 FusA Translation elong 99.9 7.3E-23 1.6E-27 236.7 27.7 257 186-444 7-392 (697)
53 KOG0458 Elongation factor 1 al 99.9 4.3E-23 9.3E-28 226.4 19.5 236 188-428 176-471 (603)
54 PRK07560 elongation factor EF- 99.9 7.7E-23 1.7E-27 242.3 22.5 255 188-443 19-374 (731)
55 COG0050 TufB GTPases - transla 99.9 3.4E-23 7.4E-28 209.8 15.2 235 188-431 11-283 (394)
56 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 5.8E-23 1.3E-27 198.8 16.1 162 190-351 1-165 (168)
57 PF00009 GTP_EFTU: Elongation 99.9 7.5E-24 1.6E-28 210.8 9.3 163 188-351 2-186 (188)
58 TIGR00490 aEF-2 translation el 99.9 4.4E-22 9.5E-27 235.3 20.0 254 188-443 18-373 (720)
59 COG4108 PrfC Peptide chain rel 99.9 1.7E-21 3.8E-26 207.0 17.7 254 188-443 11-381 (528)
60 KOG0460 Mitochondrial translat 99.9 1.6E-21 3.4E-26 201.2 16.6 237 187-431 52-327 (449)
61 cd04171 SelB SelB subfamily. 99.9 1.6E-21 3.5E-26 187.5 15.2 156 191-349 2-163 (164)
62 COG5258 GTPBP1 GTPase [General 99.9 2.5E-21 5.4E-26 202.3 17.1 241 185-428 113-418 (527)
63 COG1160 Predicted GTPases [Gen 99.9 1.1E-21 2.4E-26 212.3 13.5 152 190-352 4-165 (444)
64 KOG0461 Selenocysteine-specifi 99.9 4.6E-21 1E-25 197.6 17.1 238 188-428 6-268 (522)
65 TIGR03156 GTP_HflX GTP-binding 99.9 2E-21 4.4E-26 211.1 13.9 211 123-349 115-349 (351)
66 cd01890 LepA LepA subfamily. 99.9 4.1E-21 8.8E-26 188.4 13.7 156 190-350 1-175 (179)
67 cd01884 EF_Tu EF-Tu subfamily. 99.9 5.3E-21 1.1E-25 191.6 14.0 150 190-341 3-172 (195)
68 PF02421 FeoB_N: Ferrous iron 99.9 1E-21 2.2E-26 188.5 8.4 147 190-347 1-156 (156)
69 COG1159 Era GTPase [General fu 99.8 4.6E-21 1E-25 197.5 13.2 158 188-351 5-171 (298)
70 cd01889 SelB_euk SelB subfamil 99.8 6.5E-21 1.4E-25 190.2 13.8 162 190-351 1-185 (192)
71 PLN00116 translation elongatio 99.8 7.3E-20 1.6E-24 219.5 24.9 115 188-302 18-163 (843)
72 cd04166 CysN_ATPS CysN_ATPS su 99.8 7.8E-21 1.7E-25 192.4 12.6 152 191-343 1-185 (208)
73 cd03692 mtIF2_IVc mtIF2_IVc: t 99.8 1.2E-20 2.6E-25 163.1 11.8 84 596-686 1-84 (84)
74 KOG0465 Mitochondrial elongati 99.8 6E-20 1.3E-24 201.6 19.7 302 186-519 36-468 (721)
75 cd01891 TypA_BipA TypA (tyrosi 99.8 1.9E-20 4.1E-25 187.1 14.0 156 189-345 2-175 (194)
76 TIGR00436 era GTP-binding prot 99.8 2.2E-20 4.7E-25 196.6 14.8 153 191-351 2-163 (270)
77 TIGR03594 GTPase_EngA ribosome 99.8 2.9E-20 6.3E-25 208.2 16.6 163 188-356 171-348 (429)
78 cd04120 Rab12 Rab12 subfamily. 99.8 3.9E-20 8.5E-25 186.4 15.3 155 191-351 2-162 (202)
79 PRK15494 era GTPase Era; Provi 99.8 3.2E-20 6.9E-25 201.3 15.6 158 187-352 50-216 (339)
80 PRK03003 GTP-binding protein D 99.8 3.2E-20 7E-25 210.1 15.9 165 188-357 210-387 (472)
81 PTZ00416 elongation factor 2; 99.8 2.7E-19 5.8E-24 214.3 24.2 115 188-302 18-157 (836)
82 cd01864 Rab19 Rab19 subfamily. 99.8 6.6E-20 1.4E-24 177.7 15.1 155 189-349 3-163 (165)
83 cd01894 EngA1 EngA1 subfamily. 99.8 4.7E-20 1E-24 175.8 13.6 147 193-350 1-156 (157)
84 cd04124 RabL2 RabL2 subfamily. 99.8 7.7E-20 1.7E-24 177.0 14.8 153 190-351 1-157 (161)
85 cd01897 NOG NOG1 is a nucleola 99.8 7.5E-20 1.6E-24 177.3 14.7 152 190-350 1-166 (168)
86 cd01867 Rab8_Rab10_Rab13_like 99.8 7.6E-20 1.7E-24 177.8 14.1 157 189-351 3-164 (167)
87 cd00881 GTP_translation_factor 99.8 1.2E-19 2.7E-24 178.5 15.1 159 191-350 1-185 (189)
88 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 1.7E-19 3.8E-24 181.2 16.2 155 190-352 1-168 (201)
89 cd04119 RJL RJL (RabJ-Like) su 99.8 1.5E-19 3.2E-24 174.3 14.9 155 190-350 1-165 (168)
90 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.2E-19 2.6E-24 175.9 14.3 156 190-351 3-163 (166)
91 cd01865 Rab3 Rab3 subfamily. 99.8 1.9E-19 4.2E-24 174.6 15.8 156 190-351 2-162 (165)
92 cd01861 Rab6 Rab6 subfamily. 99.8 1.7E-19 3.8E-24 173.4 14.8 153 190-349 1-159 (161)
93 cd04106 Rab23_lke Rab23-like s 99.8 1.8E-19 3.8E-24 173.5 14.8 154 190-349 1-160 (162)
94 KOG0084 GTPase Rab1/YPT1, smal 99.8 1.4E-19 3E-24 175.1 13.7 161 188-354 8-174 (205)
95 PRK00093 GTP-binding protein D 99.8 1.9E-19 4.2E-24 202.0 17.1 164 187-355 171-347 (435)
96 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.3E-19 2.8E-24 173.7 13.3 153 190-350 2-160 (162)
97 cd04160 Arfrp1 Arfrp1 subfamil 99.8 9.5E-20 2.1E-24 176.4 12.6 156 191-349 1-166 (167)
98 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1.8E-19 3.9E-24 178.6 14.6 160 190-352 1-166 (182)
99 cd01883 EF1_alpha Eukaryotic e 99.8 5.6E-20 1.2E-24 187.6 11.3 147 191-341 1-194 (219)
100 cd01868 Rab11_like Rab11-like. 99.8 2.3E-19 4.9E-24 173.6 14.9 154 190-350 4-163 (165)
101 cd04136 Rap_like Rap-like subf 99.8 1.2E-19 2.7E-24 174.5 13.0 154 190-350 2-161 (163)
102 cd04145 M_R_Ras_like M-Ras/R-R 99.8 1.7E-19 3.6E-24 173.8 13.8 153 190-350 3-162 (164)
103 cd04134 Rho3 Rho3 subfamily. 99.8 1.5E-19 3.2E-24 180.0 13.8 162 190-352 1-174 (189)
104 cd04149 Arf6 Arf6 subfamily. 99.8 1.4E-19 2.9E-24 176.9 13.2 154 188-349 8-167 (168)
105 cd04122 Rab14 Rab14 subfamily. 99.8 2E-19 4.2E-24 174.7 14.3 156 190-351 3-163 (166)
106 PRK03003 GTP-binding protein D 99.8 2.1E-19 4.5E-24 203.5 16.7 153 188-351 37-198 (472)
107 cd04113 Rab4 Rab4 subfamily. 99.8 2.5E-19 5.5E-24 172.5 14.7 155 190-350 1-160 (161)
108 cd00877 Ran Ran (Ras-related n 99.8 2.9E-19 6.4E-24 174.1 15.3 154 190-351 1-158 (166)
109 cd04154 Arl2 Arl2 subfamily. 99.8 2.2E-19 4.7E-24 175.8 13.8 155 187-349 12-172 (173)
110 cd04157 Arl6 Arl6 subfamily. 99.8 2.7E-19 5.9E-24 172.0 14.3 152 191-349 1-161 (162)
111 smart00173 RAS Ras subfamily o 99.8 2E-19 4.4E-24 173.6 13.3 155 190-351 1-161 (164)
112 cd01866 Rab2 Rab2 subfamily. 99.8 4.2E-19 9.2E-24 172.9 15.6 156 190-351 5-165 (168)
113 cd01895 EngA2 EngA2 subfamily. 99.8 4.5E-19 9.7E-24 171.3 15.5 157 188-349 1-172 (174)
114 cd04175 Rap1 Rap1 subgroup. T 99.8 2.7E-19 5.8E-24 173.1 13.9 155 190-351 2-162 (164)
115 COG5257 GCD11 Translation init 99.8 4.3E-19 9.4E-24 182.3 16.0 235 188-427 9-296 (415)
116 cd01874 Cdc42 Cdc42 subfamily. 99.8 2.3E-19 5E-24 176.6 13.1 157 190-350 2-173 (175)
117 cd04121 Rab40 Rab40 subfamily. 99.8 7.7E-19 1.7E-23 175.2 16.8 158 188-352 5-167 (189)
118 cd04164 trmE TrmE (MnmE, ThdF, 99.8 6E-19 1.3E-23 167.9 15.3 146 189-350 1-155 (157)
119 cd04127 Rab27A Rab27a subfamil 99.8 4.5E-19 9.8E-24 174.2 14.8 157 189-351 4-176 (180)
120 cd04150 Arf1_5_like Arf1-Arf5- 99.8 3.9E-19 8.5E-24 172.0 14.1 152 190-349 1-158 (159)
121 smart00175 RAB Rab subfamily o 99.8 6.3E-19 1.4E-23 169.6 15.4 155 190-351 1-161 (164)
122 cd01879 FeoB Ferrous iron tran 99.8 2.6E-19 5.7E-24 171.2 12.7 148 194-351 1-156 (158)
123 cd04109 Rab28 Rab28 subfamily. 99.8 9.3E-19 2E-23 178.0 17.3 158 190-353 1-167 (215)
124 cd04132 Rho4_like Rho4-like su 99.8 5.4E-19 1.2E-23 175.0 15.2 161 190-353 1-168 (187)
125 smart00177 ARF ARF-like small 99.8 6.4E-19 1.4E-23 173.3 15.5 155 188-350 12-172 (175)
126 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 4.7E-19 1E-23 173.8 14.5 155 189-351 2-163 (172)
127 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 5.7E-19 1.2E-23 174.9 15.0 161 188-352 2-170 (183)
128 cd04151 Arl1 Arl1 subfamily. 99.8 3.2E-19 6.9E-24 171.7 12.8 151 191-349 1-157 (158)
129 cd04133 Rop_like Rop subfamily 99.8 3.4E-19 7.4E-24 175.7 13.3 161 190-351 2-172 (176)
130 cd04144 Ras2 Ras2 subfamily. 99.8 3.7E-19 8E-24 177.2 13.7 154 191-352 1-163 (190)
131 PRK09518 bifunctional cytidyla 99.8 3.1E-19 6.8E-24 211.2 15.3 207 188-400 449-673 (712)
132 cd04112 Rab26 Rab26 subfamily. 99.8 9.7E-19 2.1E-23 174.4 16.3 159 190-354 1-165 (191)
133 cd01862 Rab7 Rab7 subfamily. 99.8 8.2E-19 1.8E-23 170.4 15.1 157 190-351 1-166 (172)
134 KOG0092 GTPase Rab5/YPT51 and 99.8 4.6E-19 1E-23 170.9 13.0 161 188-354 4-169 (200)
135 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 5.1E-19 1.1E-23 170.5 13.3 161 188-354 21-187 (221)
136 cd04140 ARHI_like ARHI subfami 99.8 5.4E-19 1.2E-23 171.5 13.7 153 190-349 2-162 (165)
137 cd01875 RhoG RhoG subfamily. 99.8 5.1E-19 1.1E-23 176.6 13.8 162 189-351 3-176 (191)
138 cd04135 Tc10 TC10 subfamily. 99.8 4.9E-19 1.1E-23 172.8 13.3 159 190-350 1-172 (174)
139 TIGR03594 GTPase_EngA ribosome 99.8 6.9E-19 1.5E-23 197.1 16.3 150 191-351 1-159 (429)
140 cd01888 eIF2_gamma eIF2-gamma 99.8 4.3E-19 9.3E-24 179.0 13.1 158 190-350 1-197 (203)
141 cd04142 RRP22 RRP22 subfamily. 99.8 3.6E-19 7.9E-24 178.9 12.5 157 190-352 1-174 (198)
142 PTZ00369 Ras-like protein; Pro 99.8 5.1E-19 1.1E-23 176.1 13.4 157 189-352 5-167 (189)
143 KOG0394 Ras-related GTPase [Ge 99.8 3.3E-19 7.1E-24 170.1 10.8 166 187-355 7-181 (210)
144 PLN00223 ADP-ribosylation fact 99.8 1.2E-18 2.6E-23 172.5 15.3 156 188-351 16-177 (181)
145 cd04116 Rab9 Rab9 subfamily. 99.8 1E-18 2.3E-23 169.9 14.5 155 189-349 5-168 (170)
146 cd01860 Rab5_related Rab5-rela 99.8 1E-18 2.2E-23 168.4 14.3 155 190-350 2-161 (163)
147 cd00879 Sar1 Sar1 subfamily. 99.8 1E-18 2.2E-23 173.5 14.6 160 187-350 17-189 (190)
148 cd04168 TetM_like Tet(M)-like 99.8 6.9E-19 1.5E-23 181.6 13.9 160 191-351 1-234 (237)
149 cd01898 Obg Obg subfamily. Th 99.8 8.5E-19 1.8E-23 170.1 13.7 153 191-350 2-169 (170)
150 cd04156 ARLTS1 ARLTS1 subfamil 99.8 9.1E-19 2E-23 168.3 13.8 153 191-349 1-159 (160)
151 PRK04213 GTP-binding protein; 99.8 1.1E-18 2.5E-23 174.9 14.9 156 188-351 8-191 (201)
152 cd04117 Rab15 Rab15 subfamily. 99.8 1.1E-18 2.5E-23 168.9 14.4 151 190-349 1-159 (161)
153 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.3E-18 2.8E-23 170.4 14.7 158 191-353 2-166 (170)
154 cd04114 Rab30 Rab30 subfamily. 99.8 1.4E-18 3E-23 168.7 14.7 155 189-350 7-167 (169)
155 smart00174 RHO Rho (Ras homolo 99.8 9.3E-19 2E-23 170.8 13.5 157 192-351 1-171 (174)
156 PRK00093 GTP-binding protein D 99.8 1.3E-18 2.8E-23 195.4 16.4 149 190-349 2-159 (435)
157 cd01863 Rab18 Rab18 subfamily. 99.8 1.8E-18 3.9E-23 166.5 14.9 153 190-349 1-159 (161)
158 PRK00089 era GTPase Era; Revie 99.8 9.6E-19 2.1E-23 186.2 14.3 158 188-351 4-170 (292)
159 cd04110 Rab35 Rab35 subfamily. 99.8 1.8E-18 3.9E-23 173.7 15.4 158 189-352 6-167 (199)
160 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.3E-18 2.9E-23 170.7 14.0 154 188-349 14-173 (174)
161 PLN03071 GTP-binding nuclear p 99.8 1.6E-18 3.5E-23 176.9 14.8 157 187-351 11-171 (219)
162 cd04126 Rab20 Rab20 subfamily. 99.8 9.6E-19 2.1E-23 178.5 13.1 159 190-352 1-190 (220)
163 cd00878 Arf_Arl Arf (ADP-ribos 99.8 9.5E-19 2.1E-23 168.0 12.3 151 191-349 1-157 (158)
164 cd04176 Rap2 Rap2 subgroup. T 99.8 1E-18 2.3E-23 168.6 12.7 153 190-350 2-161 (163)
165 cd01878 HflX HflX subfamily. 99.8 1.6E-18 3.5E-23 174.3 14.4 151 188-350 40-203 (204)
166 PTZ00133 ADP-ribosylation fact 99.8 2.2E-18 4.8E-23 170.7 15.1 156 188-351 16-177 (182)
167 cd04158 ARD1 ARD1 subfamily. 99.8 1.8E-18 3.8E-23 168.9 14.2 154 191-351 1-160 (169)
168 smart00178 SAR Sar1p-like memb 99.8 1.6E-18 3.5E-23 171.9 14.0 159 187-349 15-182 (184)
169 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.3E-18 2.8E-23 178.1 13.6 158 191-349 1-220 (224)
170 cd04123 Rab21 Rab21 subfamily. 99.8 2.1E-18 4.6E-23 165.2 14.3 155 190-350 1-160 (162)
171 cd01871 Rac1_like Rac1-like su 99.8 1.5E-18 3.2E-23 170.6 13.2 159 190-349 2-172 (174)
172 cd04118 Rab24 Rab24 subfamily. 99.8 3.1E-18 6.6E-23 170.6 15.6 157 190-352 1-166 (193)
173 cd04125 RabA_like RabA-like su 99.8 2.9E-18 6.4E-23 170.2 15.4 155 190-352 1-162 (188)
174 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 2.1E-18 4.5E-23 171.1 14.1 161 189-350 5-178 (182)
175 cd04139 RalA_RalB RalA/RalB su 99.8 2.1E-18 4.5E-23 165.8 13.7 155 190-351 1-161 (164)
176 cd04131 Rnd Rnd subfamily. Th 99.8 2.6E-18 5.6E-23 169.7 14.6 159 190-350 2-174 (178)
177 cd04101 RabL4 RabL4 (Rab-like4 99.8 3.7E-18 8.1E-23 164.7 15.3 155 190-350 1-162 (164)
178 cd04115 Rab33B_Rab33A Rab33B/R 99.8 4.4E-18 9.6E-23 166.1 15.9 155 189-351 2-168 (170)
179 cd04161 Arl2l1_Arl13_like Arl2 99.8 3E-18 6.5E-23 167.1 14.7 154 191-349 1-166 (167)
180 cd01892 Miro2 Miro2 subfamily. 99.8 2.5E-18 5.4E-23 168.1 13.8 157 187-351 2-165 (169)
181 cd04159 Arl10_like Arl10-like 99.8 3.8E-18 8.2E-23 162.1 14.5 152 192-349 2-158 (159)
182 cd04177 RSR1 RSR1 subgroup. R 99.8 2.7E-18 5.9E-23 167.1 13.7 156 190-351 2-163 (168)
183 cd01870 RhoA_like RhoA-like su 99.8 2.4E-18 5.3E-23 168.0 13.2 159 190-351 2-174 (175)
184 cd00157 Rho Rho (Ras homology) 99.8 2.5E-18 5.3E-23 166.8 12.9 159 190-349 1-170 (171)
185 KOG0078 GTP-binding protein SE 99.8 2.4E-18 5.3E-23 168.8 12.7 161 186-352 9-174 (207)
186 PLN03110 Rab GTPase; Provision 99.8 4.9E-18 1.1E-22 172.9 15.6 157 188-352 11-174 (216)
187 cd01893 Miro1 Miro1 subfamily. 99.8 3.3E-18 7.3E-23 166.2 13.6 157 190-351 1-163 (166)
188 cd04137 RheB Rheb (Ras Homolog 99.8 3.3E-18 7.3E-23 168.1 13.6 159 190-355 2-166 (180)
189 smart00176 RAN Ran (Ras-relate 99.8 4.5E-18 9.8E-23 171.1 14.5 149 195-351 1-153 (200)
190 cd01886 EF-G Elongation factor 99.8 2.7E-18 5.8E-23 180.4 13.3 140 191-335 1-158 (270)
191 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 6.1E-18 1.3E-22 173.7 15.7 162 189-351 13-187 (232)
192 TIGR03598 GTPase_YsxC ribosome 99.8 4.4E-18 9.4E-23 167.9 14.1 149 187-341 16-179 (179)
193 PRK12299 obgE GTPase CgtA; Rev 99.8 5.7E-18 1.2E-22 182.9 16.1 159 188-352 157-328 (335)
194 cd00154 Rab Rab family. Rab G 99.8 5.3E-18 1.2E-22 160.8 14.0 153 190-348 1-158 (159)
195 PRK09518 bifunctional cytidyla 99.8 5.3E-18 1.1E-22 200.8 17.0 153 188-351 274-435 (712)
196 cd04147 Ras_dva Ras-dva subfam 99.8 4E-18 8.7E-23 171.0 13.6 155 191-352 1-163 (198)
197 cd04143 Rhes_like Rhes_like su 99.8 6.2E-18 1.3E-22 175.6 15.0 156 190-352 1-171 (247)
198 cd04111 Rab39 Rab39 subfamily. 99.8 6.2E-18 1.3E-22 171.6 14.6 157 190-352 3-166 (211)
199 PRK11058 GTPase HflX; Provisio 99.8 5.1E-18 1.1E-22 188.7 15.0 150 190-351 198-361 (426)
200 PLN03118 Rab family protein; P 99.8 6.3E-18 1.4E-22 171.2 14.3 158 188-352 13-177 (211)
201 cd04155 Arl3 Arl3 subfamily. 99.8 5E-18 1.1E-22 165.5 13.0 155 187-349 12-172 (173)
202 cd04169 RF3 RF3 subfamily. Pe 99.8 7.6E-18 1.7E-22 176.8 15.2 116 189-305 2-139 (267)
203 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 5.9E-18 1.3E-22 172.9 13.1 160 190-351 2-175 (222)
204 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 8.4E-18 1.8E-22 163.6 13.3 152 192-349 2-163 (164)
205 cd04163 Era Era subfamily. Er 99.8 1.7E-17 3.6E-22 158.7 15.1 155 189-349 3-166 (168)
206 cd01885 EF2 EF2 (for archaea a 99.7 3.5E-18 7.7E-23 174.3 10.9 113 190-302 1-138 (222)
207 cd04130 Wrch_1 Wrch-1 subfamil 99.7 8.8E-18 1.9E-22 164.4 13.3 157 190-349 1-171 (173)
208 TIGR00231 small_GTP small GTP- 99.7 1.3E-17 2.8E-22 157.2 13.5 151 190-348 2-160 (161)
209 PLN03108 Rab family protein; P 99.7 1.7E-17 3.7E-22 168.2 15.0 157 189-351 6-167 (210)
210 cd04146 RERG_RasL11_like RERG/ 99.7 7.4E-18 1.6E-22 163.3 10.8 154 191-351 1-163 (165)
211 cd01881 Obg_like The Obg-like 99.7 9.7E-18 2.1E-22 163.2 11.7 149 194-349 1-174 (176)
212 KOG0098 GTPase Rab2, small G p 99.7 6.8E-18 1.5E-22 161.4 10.1 156 189-350 6-166 (216)
213 TIGR02528 EutP ethanolamine ut 99.7 1.1E-17 2.4E-22 158.0 11.3 135 191-348 2-141 (142)
214 PRK15467 ethanolamine utilizat 99.7 1.2E-17 2.7E-22 161.7 11.1 140 191-351 3-146 (158)
215 PRK12298 obgE GTPase CgtA; Rev 99.7 2.5E-17 5.4E-22 181.3 14.8 161 188-353 158-334 (390)
216 cd03702 IF2_mtIF2_II This fami 99.7 3.9E-17 8.5E-22 143.6 11.9 93 365-457 2-94 (95)
217 cd00880 Era_like Era (E. coli 99.7 4.1E-17 8.9E-22 153.9 13.0 154 194-350 1-162 (163)
218 cd04129 Rho2 Rho2 subfamily. 99.7 3.2E-17 6.9E-22 162.9 12.9 161 190-352 2-173 (187)
219 cd00876 Ras Ras family. The R 99.7 3.5E-17 7.6E-22 156.4 12.7 153 191-350 1-159 (160)
220 PRK12297 obgE GTPase CgtA; Rev 99.7 5.9E-17 1.3E-21 179.3 15.9 154 190-353 159-328 (424)
221 PF00025 Arf: ADP-ribosylation 99.7 7.9E-17 1.7E-21 158.7 15.2 157 187-350 12-174 (175)
222 PRK00454 engB GTP-binding prot 99.7 7.6E-17 1.6E-21 160.5 15.2 156 187-351 22-193 (196)
223 PRK12296 obgE GTPase CgtA; Rev 99.7 5.7E-17 1.2E-21 181.6 15.4 161 187-355 157-343 (500)
224 TIGR02729 Obg_CgtA Obg family 99.7 4E-17 8.6E-22 176.1 13.6 156 188-350 156-327 (329)
225 cd04148 RGK RGK subfamily. Th 99.7 7.4E-17 1.6E-21 164.9 14.4 156 190-353 1-164 (221)
226 cd04167 Snu114p Snu114p subfam 99.7 2.8E-17 6.1E-22 166.9 11.1 113 190-302 1-136 (213)
227 PF00071 Ras: Ras family; Int 99.7 6.6E-17 1.4E-21 155.7 12.6 155 191-351 1-160 (162)
228 KOG0080 GTPase Rab18, small G 99.7 3.4E-17 7.3E-22 152.7 9.7 157 189-351 11-173 (209)
229 COG0218 Predicted GTPase [Gene 99.7 1.5E-16 3.3E-21 156.1 14.9 157 188-351 23-196 (200)
230 PRK09554 feoB ferrous iron tra 99.7 1.1E-16 2.5E-21 189.1 15.7 152 189-351 3-167 (772)
231 KOG0087 GTPase Rab11/YPT3, sma 99.7 5.9E-17 1.3E-21 158.4 10.8 159 186-350 11-174 (222)
232 cd04103 Centaurin_gamma Centau 99.7 7.2E-17 1.6E-21 156.3 11.4 149 190-349 1-156 (158)
233 KOG0464 Elongation factor G [T 99.7 1.1E-17 2.3E-22 175.9 5.7 255 188-444 36-419 (753)
234 cd01873 RhoBTB RhoBTB subfamil 99.7 2.1E-16 4.5E-21 158.5 13.0 158 190-350 3-194 (195)
235 TIGR00437 feoB ferrous iron tr 99.7 1.5E-16 3.2E-21 184.0 13.2 145 196-351 1-154 (591)
236 KOG0095 GTPase Rab30, small G 99.7 1.7E-16 3.6E-21 146.2 10.8 154 189-350 7-167 (213)
237 KOG0093 GTPase Rab3, small G p 99.7 2.1E-16 4.6E-21 145.4 10.2 155 189-352 21-183 (193)
238 KOG1423 Ras-like GTPase ERA [C 99.7 3.2E-16 6.9E-21 160.6 12.3 169 186-357 69-276 (379)
239 KOG0079 GTP-binding protein H- 99.7 2.4E-16 5.2E-21 145.1 10.0 159 190-355 9-172 (198)
240 PTZ00132 GTP-binding nuclear p 99.7 1.3E-15 2.9E-20 154.6 16.6 156 188-351 8-167 (215)
241 cd04170 EF-G_bact Elongation f 99.7 2.9E-16 6.4E-21 165.1 11.4 122 191-313 1-140 (268)
242 KOG0459 Polypeptide release fa 99.7 4.7E-16 1E-20 164.1 12.7 257 185-445 75-391 (501)
243 cd03701 IF2_IF5B_II IF2_IF5B_I 99.7 9.2E-16 2E-20 135.5 11.6 93 365-457 2-94 (95)
244 cd00882 Ras_like_GTPase Ras-li 99.6 5.9E-16 1.3E-20 144.0 10.4 150 194-348 1-156 (157)
245 COG2229 Predicted GTPase [Gene 99.6 2.7E-15 5.9E-20 144.3 14.9 158 187-350 8-176 (187)
246 KOG0086 GTPase Rab4, small G p 99.6 9.7E-16 2.1E-20 141.7 10.3 154 189-348 9-167 (214)
247 cd01876 YihA_EngB The YihA (En 99.6 3.4E-15 7.5E-20 143.1 13.8 152 192-350 2-169 (170)
248 cd01896 DRG The developmentall 99.6 2.8E-15 6.1E-20 154.5 13.3 148 191-353 2-227 (233)
249 cd04105 SR_beta Signal recogni 99.6 5.4E-15 1.2E-19 149.2 14.7 159 190-349 1-202 (203)
250 COG0370 FeoB Fe2+ transport sy 99.6 3.1E-15 6.8E-20 169.1 14.3 153 189-352 3-164 (653)
251 KOG0463 GTP-binding protein GP 99.6 2.4E-15 5.2E-20 156.9 12.1 214 189-404 133-409 (641)
252 cd04102 RabL3 RabL3 (Rab-like3 99.6 6.1E-15 1.3E-19 148.6 13.6 149 190-340 1-178 (202)
253 KOG0075 GTP-binding ADP-ribosy 99.6 3.3E-15 7.2E-20 137.6 9.8 158 190-353 21-183 (186)
254 KOG0073 GTP-binding ADP-ribosy 99.6 2.1E-14 4.6E-19 135.0 13.7 158 187-351 14-177 (185)
255 PF10662 PduV-EutP: Ethanolami 99.6 3.7E-15 8.1E-20 140.3 8.3 135 190-348 2-142 (143)
256 KOG0091 GTPase Rab39, small G 99.6 4.1E-15 9E-20 139.2 8.4 158 189-352 8-173 (213)
257 PF01926 MMR_HSR1: 50S ribosom 99.6 8.7E-15 1.9E-19 133.9 10.3 106 191-298 1-116 (116)
258 KOG1143 Predicted translation 99.6 1.4E-14 3.1E-19 151.2 13.0 238 190-428 168-472 (591)
259 COG1100 GTPase SAR1 and relate 99.6 2.3E-14 5E-19 145.3 13.7 163 190-352 6-185 (219)
260 COG2262 HflX GTPases [General 99.6 2.3E-14 5.1E-19 153.5 13.9 154 187-352 190-356 (411)
261 KOG0083 GTPase Rab26/Rab37, sm 99.6 1.9E-15 4.1E-20 136.8 4.2 179 194-381 2-187 (192)
262 KOG0088 GTPase Rab21, small G 99.5 7E-15 1.5E-19 136.9 6.3 157 188-350 12-173 (218)
263 cd04104 p47_IIGP_like p47 (47- 99.5 5.3E-14 1.1E-18 141.3 12.5 160 189-352 1-184 (197)
264 KOG0070 GTP-binding ADP-ribosy 99.5 3.7E-14 8E-19 136.8 9.9 157 188-352 16-178 (181)
265 COG1084 Predicted GTPase [Gene 99.5 6.8E-14 1.5E-18 145.8 12.4 158 185-351 164-335 (346)
266 KOG0395 Ras-related GTPase [Ge 99.5 6.8E-14 1.5E-18 140.2 11.9 159 188-353 2-166 (196)
267 KOG0097 GTPase Rab14, small G 99.5 6.2E-14 1.4E-18 128.1 9.4 147 189-344 11-165 (215)
268 KOG0393 Ras-related small GTPa 99.5 4.7E-14 1E-18 139.3 7.8 160 188-351 3-178 (198)
269 KOG1489 Predicted GTP-binding 99.5 1.2E-13 2.6E-18 142.8 11.0 154 188-349 195-364 (366)
270 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.5E-13 5.5E-18 136.1 12.8 158 190-353 1-185 (196)
271 PLN00023 GTP-binding protein; 99.5 2E-13 4.3E-18 144.9 11.7 116 188-303 20-165 (334)
272 COG1163 DRG Predicted GTPase [ 99.5 4.4E-13 9.5E-18 139.3 13.1 152 190-355 64-292 (365)
273 PRK09866 hypothetical protein; 99.4 1.1E-12 2.3E-17 148.0 14.6 112 237-350 230-351 (741)
274 KOG0081 GTPase Rab27, small G 99.4 6.5E-14 1.4E-18 130.6 3.9 155 190-350 10-179 (219)
275 PF08477 Miro: Miro-like prote 99.4 3.1E-13 6.6E-18 123.6 7.5 109 191-300 1-119 (119)
276 PTZ00099 rab6; Provisional 99.4 1.2E-12 2.7E-17 129.1 12.1 134 214-353 5-143 (176)
277 cd01882 BMS1 Bms1. Bms1 is an 99.4 2.1E-12 4.6E-17 132.5 13.6 145 186-341 36-185 (225)
278 COG3596 Predicted GTPase [Gene 99.4 5.2E-13 1.1E-17 136.3 8.6 164 187-351 37-221 (296)
279 cd01899 Ygr210 Ygr210 subfamil 99.4 4.2E-12 9E-17 136.3 13.6 81 192-272 1-111 (318)
280 COG0536 Obg Predicted GTPase [ 99.4 4.4E-12 9.5E-17 132.9 11.8 160 190-354 160-335 (369)
281 KOG0076 GTP-binding ADP-ribosy 99.3 2.4E-12 5.2E-17 122.4 7.4 162 188-353 16-188 (197)
282 KOG0467 Translation elongation 99.3 3.2E-12 6.9E-17 144.3 9.5 113 188-301 8-136 (887)
283 KOG0466 Translation initiation 99.3 1.1E-12 2.5E-17 134.1 5.2 208 189-400 38-295 (466)
284 KOG0469 Elongation factor 2 [T 99.3 1.6E-11 3.5E-16 132.5 12.2 115 188-302 18-163 (842)
285 KOG0071 GTP-binding ADP-ribosy 99.3 2.7E-11 5.8E-16 111.2 11.6 155 189-351 17-177 (180)
286 KOG4252 GTP-binding protein [S 99.3 1.4E-12 2.9E-17 124.1 2.7 208 184-402 15-230 (246)
287 KOG0074 GTP-binding ADP-ribosy 99.3 1.2E-11 2.6E-16 113.5 7.9 155 187-349 15-176 (185)
288 PRK09602 translation-associate 99.2 5.5E-11 1.2E-15 131.4 13.7 82 190-271 2-113 (396)
289 PF09439 SRPRB: Signal recogni 99.2 1.3E-11 2.8E-16 121.4 7.6 114 188-306 2-129 (181)
290 cd01850 CDC_Septin CDC/Septin. 99.2 6.8E-11 1.5E-15 124.9 13.5 112 190-303 5-157 (276)
291 PF14578 GTP_EFTU_D4: Elongati 99.2 7.3E-11 1.6E-15 99.9 10.0 79 594-686 3-81 (81)
292 KOG0468 U5 snRNP-specific prot 99.2 3.2E-11 6.9E-16 134.0 9.8 116 187-302 126-262 (971)
293 cd03703 aeIF5B_II aeIF5B_II: T 99.2 1E-10 2.3E-15 104.8 11.2 90 365-455 2-107 (110)
294 KOG0090 Signal recognition par 99.2 6E-11 1.3E-15 116.8 10.1 158 188-350 37-237 (238)
295 KOG1532 GTPase XAB1, interacts 99.2 3.7E-11 8.1E-16 121.9 7.2 168 185-352 15-264 (366)
296 cd01853 Toc34_like Toc34-like 99.1 3.5E-10 7.6E-15 117.6 13.3 118 185-303 27-163 (249)
297 COG4917 EutP Ethanolamine util 99.1 5.4E-11 1.2E-15 107.5 6.2 137 190-349 2-143 (148)
298 PTZ00258 GTP-binding protein; 99.1 4.1E-10 8.8E-15 123.4 13.5 86 186-271 18-126 (390)
299 KOG0072 GTP-binding ADP-ribosy 99.1 1.1E-10 2.5E-15 107.6 6.5 158 188-352 17-179 (182)
300 PRK13768 GTPase; Provisional 99.1 2.1E-10 4.6E-15 119.7 9.1 115 237-351 97-246 (253)
301 PRK09435 membrane ATPase/prote 99.1 3.7E-10 7.9E-15 121.6 11.1 112 235-353 147-261 (332)
302 TIGR02836 spore_IV_A stage IV 99.1 5.3E-10 1.2E-14 120.8 11.6 139 190-336 18-219 (492)
303 KOG0077 Vesicle coat complex C 99.1 3.7E-10 8E-15 106.8 8.9 159 186-348 17-189 (193)
304 KOG3883 Ras family small GTPas 99.1 1.4E-09 3.1E-14 101.4 12.0 161 186-352 6-175 (198)
305 KOG0096 GTPase Ran/TC4/GSP1 (n 99.1 1.1E-09 2.4E-14 105.8 11.4 154 189-351 10-168 (216)
306 KOG1707 Predicted Ras related/ 99.1 1.5E-10 3.3E-15 128.3 6.1 157 186-349 6-172 (625)
307 KOG1673 Ras GTPases [General f 99.1 5.1E-10 1.1E-14 104.5 8.6 169 189-358 20-192 (205)
308 KOG0410 Predicted GTP binding 99.1 3.4E-10 7.5E-15 117.5 8.1 147 187-350 176-339 (410)
309 KOG2486 Predicted GTPase [Gene 99.0 6.6E-10 1.4E-14 113.5 9.4 160 187-350 134-314 (320)
310 smart00053 DYNc Dynamin, GTPas 99.0 1.6E-09 3.5E-14 111.7 12.0 118 188-305 25-208 (240)
311 PF10396 TrmE_N: GTP-binding p 99.0 4.4E-11 9.5E-16 108.1 0.4 57 4-61 40-114 (114)
312 TIGR00991 3a0901s02IAP34 GTP-b 99.0 2.8E-09 6.1E-14 112.9 13.3 116 187-303 36-167 (313)
313 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 1.7E-09 3.6E-14 111.0 10.4 113 191-303 1-125 (232)
314 PF00350 Dynamin_N: Dynamin fa 99.0 1.3E-09 2.8E-14 105.8 8.8 63 237-299 101-168 (168)
315 KOG1490 GTP-binding protein CR 99.0 1.2E-09 2.7E-14 118.9 8.6 159 184-347 163-336 (620)
316 TIGR00750 lao LAO/AO transport 98.9 4.7E-09 1E-13 112.4 11.3 111 235-352 125-238 (300)
317 TIGR00073 hypB hydrogenase acc 98.9 4.7E-09 1E-13 106.3 10.4 149 188-350 21-205 (207)
318 PF03029 ATP_bind_1: Conserved 98.9 2.4E-09 5.2E-14 110.7 6.8 114 238-351 92-236 (238)
319 TIGR00101 ureG urease accessor 98.8 8.1E-09 1.8E-13 104.0 9.0 99 236-350 91-194 (199)
320 cd01900 YchF YchF subfamily. 98.8 5.7E-09 1.2E-13 109.7 6.7 81 192-272 1-104 (274)
321 PF05049 IIGP: Interferon-indu 98.8 7.4E-09 1.6E-13 112.4 7.5 159 188-350 34-216 (376)
322 PRK09601 GTP-binding protein Y 98.8 9.6E-09 2.1E-13 111.5 8.1 83 190-272 3-108 (364)
323 COG1703 ArgK Putative periplas 98.8 2.8E-08 6.1E-13 103.2 10.4 161 188-355 50-257 (323)
324 PF03308 ArgK: ArgK protein; 98.7 6.4E-09 1.4E-13 106.7 4.5 156 188-354 28-232 (266)
325 PF04548 AIG1: AIG1 family; I 98.7 4.3E-08 9.4E-13 99.7 9.6 157 190-352 1-186 (212)
326 COG0012 Predicted GTPase, prob 98.7 8.9E-08 1.9E-12 102.7 12.2 84 189-272 2-109 (372)
327 KOG4423 GTP-binding protein-li 98.7 2.7E-09 5.9E-14 102.7 0.4 159 190-352 26-194 (229)
328 COG0378 HypB Ni2+-binding GTPa 98.7 6.6E-08 1.4E-12 94.9 9.0 143 188-350 11-199 (202)
329 KOG3886 GTP-binding protein [S 98.6 4.1E-08 8.9E-13 97.9 5.5 148 189-336 4-163 (295)
330 cd01858 NGP_1 NGP-1. Autoanti 98.6 6.2E-08 1.3E-12 93.6 6.7 56 188-247 101-157 (157)
331 TIGR00993 3a0901s04IAP86 chlor 98.6 3E-07 6.6E-12 104.9 12.0 116 186-303 115-250 (763)
332 cd04178 Nucleostemin_like Nucl 98.6 8.1E-08 1.8E-12 94.5 6.3 58 186-247 114-172 (172)
333 PRK10463 hydrogenase nickel in 98.6 9.6E-08 2.1E-12 100.6 7.0 58 289-350 230-287 (290)
334 TIGR03597 GTPase_YqeH ribosome 98.6 1E-07 2.2E-12 104.6 7.3 57 189-249 154-216 (360)
335 KOG1486 GTP-binding protein DR 98.6 6.7E-07 1.4E-11 90.3 12.1 82 190-272 63-151 (364)
336 cd01859 MJ1464 MJ1464. This f 98.5 1.7E-07 3.7E-12 90.2 7.1 92 252-351 4-95 (156)
337 PRK13796 GTPase YqeH; Provisio 98.5 6.4E-07 1.4E-11 98.5 10.5 57 188-248 159-221 (365)
338 cd03693 EF1_alpha_II EF1_alpha 98.4 1E-06 2.2E-11 77.4 9.2 79 598-686 7-87 (91)
339 KOG1954 Endocytosis/signaling 98.4 9.8E-07 2.1E-11 93.4 10.1 116 187-303 56-225 (532)
340 cd01855 YqeH YqeH. YqeH is an 98.4 3.3E-07 7.2E-12 91.3 5.7 56 188-247 126-190 (190)
341 COG5192 BMS1 GTP-binding prote 98.4 2.1E-06 4.6E-11 94.6 11.8 110 184-303 64-177 (1077)
342 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 5.9E-07 1.3E-11 85.2 5.9 53 191-247 85-138 (141)
343 PF00735 Septin: Septin; Inte 98.3 1.4E-06 3E-11 92.4 9.0 113 190-303 5-156 (281)
344 cd01849 YlqF_related_GTPase Yl 98.3 6.6E-07 1.4E-11 86.3 6.1 57 187-247 98-155 (155)
345 cd01342 Translation_Factor_II_ 98.3 5E-06 1.1E-10 69.6 10.5 80 598-685 3-82 (83)
346 KOG1487 GTP-binding protein DR 98.3 2E-06 4.3E-11 87.3 9.2 82 191-273 61-149 (358)
347 cd01855 YqeH YqeH. YqeH is an 98.3 1.9E-06 4.1E-11 85.8 8.8 103 246-351 20-124 (190)
348 PRK09563 rbgA GTPase YlqF; Rev 98.3 9.1E-07 2E-11 94.2 6.8 59 186-248 118-177 (287)
349 cd03696 selB_II selB_II: this 98.3 3.5E-06 7.6E-11 72.6 9.1 78 598-685 3-82 (83)
350 COG1161 Predicted GTPases [Gen 98.3 8.4E-07 1.8E-11 95.9 5.8 58 186-247 129-187 (322)
351 cd01856 YlqF YlqF. Proteins o 98.3 1.6E-06 3.6E-11 84.9 6.7 58 186-247 112-170 (171)
352 TIGR03596 GTPase_YlqF ribosome 98.3 1.2E-06 2.7E-11 92.7 6.2 57 187-247 116-173 (276)
353 TIGR00157 ribosome small subun 98.2 2.9E-06 6.3E-11 88.3 7.7 95 248-349 24-120 (245)
354 KOG0448 Mitofusin 1 GTPase, in 98.2 6.3E-06 1.4E-10 93.6 10.3 117 187-304 107-276 (749)
355 cd01858 NGP_1 NGP-1. Autoanti 98.2 5E-06 1.1E-10 80.2 8.1 90 256-352 4-95 (157)
356 cd01856 YlqF YlqF. Proteins o 98.2 6.7E-06 1.4E-10 80.6 9.0 98 244-351 2-100 (171)
357 TIGR00092 GTP-binding protein 98.1 3.6E-06 7.8E-11 91.7 7.0 83 190-272 3-109 (368)
358 cd03690 Tet_II Tet_II: This su 98.1 1.2E-05 2.6E-10 69.7 8.8 79 361-440 1-83 (85)
359 cd01851 GBP Guanylate-binding 98.1 6.7E-06 1.5E-10 84.4 8.3 83 190-272 8-103 (224)
360 PRK12289 GTPase RsgA; Reviewed 98.1 2.5E-06 5.5E-11 93.1 5.2 58 190-251 173-238 (352)
361 PRK12288 GTPase RsgA; Reviewed 98.1 3.4E-06 7.4E-11 92.0 5.7 58 190-251 206-271 (347)
362 smart00010 small_GTPase Small 98.1 2.6E-06 5.6E-11 77.7 3.9 112 190-341 1-115 (124)
363 cd01849 YlqF_related_GTPase Yl 98.1 8.3E-06 1.8E-10 78.6 7.3 83 262-351 1-84 (155)
364 KOG1491 Predicted GTP-binding 98.1 7.5E-06 1.6E-10 86.4 7.0 85 188-272 19-126 (391)
365 TIGR03596 GTPase_YlqF ribosome 98.1 8.1E-06 1.8E-10 86.5 7.4 99 244-352 4-103 (276)
366 cd03698 eRF3_II_like eRF3_II_l 98.1 3.9E-05 8.4E-10 66.1 10.3 76 598-684 4-81 (83)
367 cd03695 CysN_NodQ_II CysN_NodQ 98.0 4.6E-05 9.9E-10 65.4 10.4 77 598-684 3-79 (81)
368 cd03694 GTPBP_II Domain II of 98.0 4E-05 8.6E-10 66.7 10.1 79 598-684 3-85 (87)
369 cd04092 mtEFG2_II_like mtEFG2_ 98.0 3.3E-05 7.2E-10 66.5 9.4 76 365-441 2-82 (83)
370 cd01859 MJ1464 MJ1464. This f 98.0 1E-05 2.3E-10 77.8 6.5 56 188-247 100-156 (156)
371 PRK10416 signal recognition pa 98.0 4E-05 8.6E-10 82.8 11.4 145 187-345 112-303 (318)
372 PF03193 DUF258: Protein of un 98.0 6.3E-06 1.4E-10 79.8 4.7 60 189-252 35-102 (161)
373 TIGR00157 ribosome small subun 98.0 7.4E-06 1.6E-10 85.3 5.0 58 189-251 120-185 (245)
374 PRK12289 GTPase RsgA; Reviewed 97.9 1.6E-05 3.5E-10 86.8 7.3 86 256-349 85-172 (352)
375 cd04088 EFG_mtEFG_II EFG_mtEFG 97.9 5.9E-05 1.3E-09 64.8 9.1 76 365-441 2-82 (83)
376 cd03691 BipA_TypA_II BipA_TypA 97.9 6.3E-05 1.4E-09 65.1 9.3 77 364-441 1-85 (86)
377 COG5019 CDC3 Septin family pro 97.9 8E-05 1.7E-09 79.9 11.7 115 188-304 22-177 (373)
378 TIGR00064 ftsY signal recognit 97.9 5.6E-05 1.2E-09 79.9 10.1 97 235-345 153-261 (272)
379 PRK09563 rbgA GTPase YlqF; Rev 97.9 2.1E-05 4.6E-10 83.7 6.9 100 243-352 6-106 (287)
380 PLN00043 elongation factor 1-a 97.9 0.00068 1.5E-08 76.7 18.9 178 494-686 90-316 (447)
381 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 2.9E-05 6.2E-10 73.6 6.0 77 255-339 6-84 (141)
382 cd04089 eRF3_II eRF3_II: domai 97.8 0.00013 2.9E-09 62.7 9.5 75 599-685 5-81 (82)
383 cd03689 RF3_II RF3_II: this su 97.8 0.00012 2.6E-09 63.5 9.1 74 367-441 2-83 (85)
384 cd03693 EF1_alpha_II EF1_alpha 97.8 0.0001 2.2E-09 64.7 8.7 80 361-442 2-87 (91)
385 cd03697 EFTU_II EFTU_II: Elong 97.8 7.4E-05 1.6E-09 65.0 7.6 78 599-684 4-83 (87)
386 cd03698 eRF3_II_like eRF3_II_l 97.8 0.00013 2.7E-09 62.9 8.6 75 363-440 1-81 (83)
387 cd03694 GTPBP_II Domain II of 97.8 0.00011 2.4E-09 63.9 8.2 63 365-428 2-70 (87)
388 KOG3905 Dynein light intermedi 97.8 0.00027 5.8E-09 74.2 12.1 162 182-351 45-289 (473)
389 TIGR00483 EF-1_alpha translati 97.8 0.00088 1.9E-08 75.5 17.5 181 494-685 90-309 (426)
390 PRK14722 flhF flagellar biosyn 97.8 0.00013 2.7E-09 80.1 10.3 146 185-342 133-322 (374)
391 PRK00098 GTPase RsgA; Reviewed 97.7 3.1E-05 6.8E-10 82.9 5.4 59 188-250 163-229 (298)
392 KOG1547 Septin CDC10 and relat 97.7 0.00012 2.6E-09 73.9 9.0 112 190-303 47-198 (336)
393 PRK00098 GTPase RsgA; Reviewed 97.7 5.2E-05 1.1E-09 81.2 7.0 84 258-348 78-163 (298)
394 cd01854 YjeQ_engC YjeQ/EngC. 97.7 5.3E-05 1.2E-09 80.7 7.1 83 258-348 76-160 (287)
395 KOG2655 Septin family protein 97.7 0.00018 3.8E-09 77.8 10.5 115 189-304 21-173 (366)
396 PRK12736 elongation factor Tu; 97.7 0.0013 2.7E-08 73.4 17.8 183 495-686 81-295 (394)
397 KOG0447 Dynamin-like GTP bindi 97.7 0.00025 5.4E-09 78.5 11.7 131 188-318 307-511 (980)
398 cd04091 mtEFG1_II_like mtEFG1_ 97.7 0.00025 5.5E-09 60.7 9.5 74 365-441 2-80 (81)
399 KOG1424 Predicted GTP-binding 97.7 3.4E-05 7.5E-10 85.4 4.8 55 189-247 314-369 (562)
400 TIGR01425 SRP54_euk signal rec 97.7 0.00012 2.5E-09 81.7 9.1 113 188-302 99-252 (429)
401 PRK14974 cell division protein 97.7 0.00021 4.6E-09 77.5 10.7 97 235-345 221-323 (336)
402 TIGR03597 GTPase_YqeH ribosome 97.7 0.00011 2.3E-09 81.0 8.2 99 247-350 50-151 (360)
403 cd03112 CobW_like The function 97.6 0.00021 4.5E-09 69.3 9.0 63 236-301 86-158 (158)
404 cd01854 YjeQ_engC YjeQ/EngC. 97.6 5.7E-05 1.2E-09 80.5 5.4 59 189-251 161-227 (287)
405 COG1162 Predicted GTPases [Gen 97.6 4.5E-05 9.7E-10 80.5 4.4 61 188-252 163-231 (301)
406 TIGR00485 EF-Tu translation el 97.6 0.0021 4.6E-08 71.7 17.9 180 495-685 81-294 (394)
407 KOG2485 Conserved ATP/GTP bind 97.6 7.2E-05 1.6E-09 78.5 5.6 60 187-247 141-206 (335)
408 PRK01889 GTPase RsgA; Reviewed 97.6 0.00023 5E-09 78.2 9.6 83 258-348 110-193 (356)
409 PF03144 GTP_EFTU_D2: Elongati 97.6 0.0003 6.5E-09 58.9 8.1 67 618-684 2-73 (74)
410 PLN03126 Elongation factor Tu; 97.6 0.00041 8.8E-09 79.0 11.8 106 570-687 267-375 (478)
411 KOG1707 Predicted Ras related/ 97.6 0.00056 1.2E-08 77.1 12.3 161 187-355 423-586 (625)
412 PTZ00141 elongation factor 1- 97.6 0.0023 4.9E-08 72.5 17.4 178 494-686 90-316 (446)
413 smart00275 G_alpha G protein a 97.6 0.00033 7.1E-09 76.5 10.2 79 223-302 171-264 (342)
414 cd03699 lepA_II lepA_II: This 97.6 0.00049 1.1E-08 59.7 9.3 76 365-441 2-85 (86)
415 cd00066 G-alpha G protein alph 97.6 0.0002 4.3E-09 77.5 8.3 79 223-302 148-241 (317)
416 PRK10512 selenocysteinyl-tRNA- 97.6 0.0023 5E-08 75.2 17.7 177 494-685 56-257 (614)
417 PLN03127 Elongation factor Tu; 97.6 0.0024 5.1E-08 72.3 17.1 178 495-686 130-348 (447)
418 PF00448 SRP54: SRP54-type pro 97.6 0.00021 4.6E-09 71.9 7.8 95 235-344 82-183 (196)
419 cd03696 selB_II selB_II: this 97.6 0.00038 8.2E-09 59.9 8.3 63 365-428 2-66 (83)
420 cd04089 eRF3_II eRF3_II: domai 97.5 0.00042 9E-09 59.6 8.4 63 363-428 1-65 (82)
421 PRK12317 elongation factor 1-a 97.5 0.0024 5.3E-08 71.9 16.9 181 494-685 89-307 (425)
422 PRK00049 elongation factor Tu; 97.5 0.0039 8.5E-08 69.6 18.4 182 495-686 81-297 (396)
423 PF05783 DLIC: Dynein light in 97.5 0.0011 2.4E-08 75.0 13.9 86 186-274 22-114 (472)
424 PRK12735 elongation factor Tu; 97.5 0.005 1.1E-07 68.7 19.1 183 495-686 81-297 (396)
425 PRK12727 flagellar biosynthesi 97.5 0.00065 1.4E-08 77.1 11.5 145 184-343 345-527 (559)
426 KOG0082 G-protein alpha subuni 97.5 0.00032 7E-09 75.8 8.5 79 223-302 182-275 (354)
427 PRK12288 GTPase RsgA; Reviewed 97.5 0.00032 6.9E-09 76.7 8.5 87 258-349 118-205 (347)
428 KOG0052 Translation elongation 97.5 0.00011 2.4E-09 79.3 4.9 114 189-303 7-156 (391)
429 cd03695 CysN_NodQ_II CysN_NodQ 97.5 0.00099 2.2E-08 57.2 9.6 63 365-428 2-66 (81)
430 TIGR00475 selB selenocysteine- 97.4 0.005 1.1E-07 72.0 18.5 178 494-684 55-257 (581)
431 KOG2484 GTPase [General functi 97.4 8.5E-05 1.8E-09 80.1 3.4 60 184-247 247-307 (435)
432 PRK00771 signal recognition pa 97.4 0.00024 5.2E-09 79.7 6.7 142 187-343 93-274 (437)
433 COG3276 SelB Selenocysteine-sp 97.3 0.00089 1.9E-08 73.5 9.8 109 568-686 143-254 (447)
434 cd03697 EFTU_II EFTU_II: Elong 97.3 0.0007 1.5E-08 58.9 6.8 63 365-428 2-68 (87)
435 PRK04000 translation initiatio 97.3 0.012 2.7E-07 65.9 18.4 187 494-685 90-315 (411)
436 CHL00071 tufA elongation facto 97.3 0.0064 1.4E-07 68.2 16.1 82 596-687 221-306 (409)
437 PTZ00327 eukaryotic translatio 97.3 0.017 3.7E-07 65.5 19.5 191 494-685 122-348 (460)
438 cd04090 eEF2_II_snRNP Loc2 eEF 97.2 0.0017 3.7E-08 57.3 8.6 75 365-440 2-91 (94)
439 PF03144 GTP_EFTU_D2: Elongati 97.2 0.0003 6.5E-09 58.9 3.6 64 378-441 1-74 (74)
440 PRK14721 flhF flagellar biosyn 97.2 0.0029 6.4E-08 70.6 11.9 145 184-344 186-370 (420)
441 cd03114 ArgK-like The function 97.2 0.00079 1.7E-08 64.6 6.3 59 235-300 90-148 (148)
442 PRK13796 GTPase YqeH; Provisio 97.1 0.0012 2.7E-08 72.7 8.6 96 249-350 58-157 (365)
443 cd03700 eEF2_snRNP_like_II EF2 97.1 0.0019 4.2E-08 56.8 8.0 74 366-440 3-91 (93)
444 PRK11889 flhF flagellar biosyn 97.1 0.001 2.2E-08 73.0 6.7 143 187-343 239-419 (436)
445 cd01342 Translation_Factor_II_ 97.0 0.0044 9.5E-08 51.4 9.2 74 365-440 2-81 (83)
446 TIGR03348 VI_IcmF type VI secr 97.0 0.001 2.2E-08 83.7 6.6 112 185-302 107-256 (1169)
447 PRK05703 flhF flagellar biosyn 96.9 0.0056 1.2E-07 68.8 11.5 144 186-344 218-401 (424)
448 cd03115 SRP The signal recogni 96.9 0.0025 5.5E-08 62.3 7.4 66 235-303 81-153 (173)
449 COG1419 FlhF Flagellar GTP-bin 96.8 0.0086 1.9E-07 65.8 11.6 142 187-342 201-379 (407)
450 PRK12726 flagellar biosynthesi 96.8 0.0067 1.4E-07 66.5 10.6 142 186-342 203-383 (407)
451 cd03692 mtIF2_IVc mtIF2_IVc: t 96.8 0.01 2.2E-07 51.3 9.8 74 366-441 3-83 (84)
452 KOG2423 Nucleolar GTPase [Gene 96.8 0.00042 9.1E-09 74.5 1.2 58 187-248 305-363 (572)
453 COG3640 CooC CO dehydrogenase 96.8 0.0022 4.7E-08 65.2 6.2 63 237-302 134-198 (255)
454 TIGR01393 lepA GTP-binding pro 96.8 0.041 8.9E-07 64.6 17.5 182 494-686 75-275 (595)
455 PRK12723 flagellar biosynthesi 96.8 0.01 2.3E-07 65.7 11.9 143 188-344 173-356 (388)
456 TIGR03680 eif2g_arch translati 96.8 0.045 9.8E-07 61.3 17.1 186 494-684 85-309 (406)
457 PRK06995 flhF flagellar biosyn 96.7 0.0036 7.8E-08 71.0 8.0 144 186-344 253-435 (484)
458 PF14578 GTP_EFTU_D4: Elongati 96.7 0.013 2.8E-07 50.1 9.1 76 363-442 4-81 (81)
459 PRK11537 putative GTP-binding 96.7 0.013 2.8E-07 63.5 11.4 113 188-303 3-164 (318)
460 TIGR02034 CysN sulfate adenyly 96.7 0.012 2.6E-07 65.9 11.6 64 620-686 235-298 (406)
461 PRK05124 cysN sulfate adenylyl 96.6 0.075 1.6E-06 60.7 17.5 182 494-686 112-326 (474)
462 KOG0460 Mitochondrial translat 96.6 0.0022 4.8E-08 68.0 4.5 153 488-682 174-335 (449)
463 PRK06731 flhF flagellar biosyn 96.6 0.019 4.2E-07 60.6 11.6 141 188-342 74-252 (270)
464 PRK05433 GTP-binding protein L 96.5 0.092 2E-06 61.8 18.1 182 494-687 79-280 (600)
465 COG1618 Predicted nucleotide k 96.5 0.079 1.7E-06 51.2 14.0 140 187-351 3-175 (179)
466 PRK10867 signal recognition pa 96.5 0.0067 1.5E-07 68.1 7.9 64 235-301 182-252 (433)
467 COG3523 IcmF Type VI protein s 96.5 0.0045 9.8E-08 76.3 6.9 112 185-303 121-270 (1188)
468 TIGR00959 ffh signal recogniti 96.5 0.0068 1.5E-07 68.0 7.6 64 235-301 181-251 (428)
469 PRK14723 flhF flagellar biosyn 96.4 0.0079 1.7E-07 71.5 8.5 143 187-344 183-367 (767)
470 PRK12724 flagellar biosynthesi 96.4 0.0074 1.6E-07 67.1 7.5 138 188-343 222-401 (432)
471 PRK13695 putative NTPase; Prov 96.4 0.011 2.5E-07 57.9 8.0 76 257-350 93-171 (174)
472 COG5256 TEF1 Translation elong 96.3 0.025 5.4E-07 62.0 10.4 104 571-688 211-316 (428)
473 PRK05506 bifunctional sulfate 96.3 0.15 3.2E-06 60.6 18.0 181 494-686 109-322 (632)
474 TIGR01394 TypA_BipA GTP-bindin 96.3 0.27 5.9E-06 57.7 19.8 80 597-685 202-285 (594)
475 cd03688 eIF2_gamma_II eIF2_gam 96.3 0.023 5.1E-07 51.3 8.5 67 360-427 2-90 (113)
476 COG0523 Putative GTPases (G3E 96.3 0.021 4.5E-07 61.9 9.7 145 190-344 2-193 (323)
477 cd03688 eIF2_gamma_II eIF2_gam 96.2 0.039 8.4E-07 49.9 9.3 74 597-670 7-90 (113)
478 TIGR02475 CobW cobalamin biosy 96.0 0.049 1.1E-06 59.6 11.4 25 188-212 3-27 (341)
479 cd03110 Fer4_NifH_child This p 96.0 0.015 3.3E-07 57.1 6.8 67 235-303 91-157 (179)
480 PRK01889 GTPase RsgA; Reviewed 96.0 0.0065 1.4E-07 66.8 4.5 62 186-251 192-261 (356)
481 PF09547 Spore_IV_A: Stage IV 96.0 0.037 8.1E-07 60.9 10.2 51 278-336 169-219 (492)
482 cd04088 EFG_mtEFG_II EFG_mtEFG 96.0 0.062 1.3E-06 45.9 9.6 66 618-685 16-82 (83)
483 cd04092 mtEFG2_II_like mtEFG2_ 96.0 0.064 1.4E-06 45.9 9.6 65 618-684 16-81 (83)
484 KOG3887 Predicted small GTPase 96.0 0.018 3.8E-07 58.7 6.8 109 190-303 28-149 (347)
485 COG1162 Predicted GTPases [Gen 95.9 0.039 8.4E-07 58.6 9.4 87 257-349 76-164 (301)
486 cd02036 MinD Bacterial cell di 95.8 0.035 7.6E-07 54.0 8.4 63 238-302 64-127 (179)
487 cd02038 FleN-like FleN is a me 95.7 0.016 3.4E-07 54.8 5.3 103 194-301 5-109 (139)
488 PF02492 cobW: CobW/HypB/UreG, 95.7 0.017 3.7E-07 57.0 5.5 111 190-303 1-155 (178)
489 KOG3859 Septins (P-loop GTPase 95.7 0.011 2.5E-07 61.1 4.2 114 189-303 42-190 (406)
490 cd04178 Nucleostemin_like Nucl 95.7 0.013 2.8E-07 57.7 4.5 42 262-303 1-44 (172)
491 KOG0705 GTPase-activating prot 95.7 0.015 3.3E-07 65.1 5.4 155 189-352 30-189 (749)
492 COG0552 FtsY Signal recognitio 95.6 0.016 3.5E-07 62.0 5.3 25 187-211 137-161 (340)
493 PRK14738 gmk guanylate kinase; 95.6 0.024 5.3E-07 57.4 6.4 28 186-213 10-37 (206)
494 PF00503 G-alpha: G-protein al 95.5 0.019 4.1E-07 63.9 5.9 80 223-302 222-316 (389)
495 cd02042 ParA ParA and ParB of 95.5 0.034 7.5E-07 49.3 6.2 71 192-272 2-73 (104)
496 cd00071 GMPK Guanosine monopho 95.4 0.026 5.6E-07 53.3 5.5 52 192-246 2-55 (137)
497 COG0194 Gmk Guanylate kinase [ 95.3 0.011 2.3E-07 58.5 2.6 54 188-244 3-56 (191)
498 cd01983 Fer4_NifH The Fer4_Nif 95.3 0.047 1E-06 46.7 6.4 71 192-275 2-73 (99)
499 TIGR03263 guanyl_kin guanylate 95.3 0.038 8.2E-07 54.2 6.4 54 190-246 2-56 (180)
500 PRK14737 gmk guanylate kinase; 95.2 0.015 3.3E-07 57.9 3.2 53 188-243 3-56 (186)
No 1
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-110 Score=894.35 Aligned_cols=583 Identities=51% Similarity=0.781 Sum_probs=514.5
Q ss_pred CCCceeecchhhHHHHHHHHhccCHHHHHHHHHhcccccccC--CCCCChh----HHHHHHHHhCCceee----------
Q 005218 113 SQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSE--FEPLSID----VAELVVMELGFNVRR---------- 176 (708)
Q Consensus 113 ~~~~~v~~~~~~a~~~la~~l~~~~~~l~~~L~~~~~~~e~~--~~~~~~~----~~~~~~~~~~~~~~~---------- 176 (708)
..++.++++..++..+|+..++.....+.+.|+.+...++.. +..++.- ..+.+..++......
T Consensus 57 ~~~~~~~v~~~m~~~kla~~~~~~~~~v~e~l~sv~~a~~~~~~~~~ld~~~I~ev~~~~~~~~~~~~~~~~~~~e~~~~ 136 (683)
T KOG1145|consen 57 LKKKNFSVWNYMTAAKLAAALKCSVDEVQEALLSVGFAYNLAIADSNLDTKGILEVVELILMKYRFVLLPAETSVEEKAA 136 (683)
T ss_pred ccCccccccccccHHHHhhhhcCCHHHHHHHHHhccccccccccccccchHHHHHHHHHHhhccccccCChhhhhhhhhh
Confidence 346778999999999999999999999999998877633211 1222221 222222222211100
Q ss_pred ----ecCCCCCCCCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh
Q 005218 177 ----IHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (708)
Q Consensus 177 ----l~~~~~~~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~ 252 (708)
-+..+...+.+|||.|.||||++|||||||++|++..++..+.+|+|++++++.+.+++|..++|+|||||..|..
T Consensus 137 ~~~~~~~a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~a 216 (683)
T KOG1145|consen 137 DVAPQPEADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSA 216 (683)
T ss_pred hcccCCccCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHH
Confidence 0222334577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEE
Q 005218 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
||.+++..+|+++||+.++||+++||.+.+++++..++|+|+++||||.++++++++.++|..+++..+.++++++++++
T Consensus 217 MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 217 MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccceEEEEeccc
Q 005218 333 SAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMV 412 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~kVr~i~~~~ 412 (708)
||++|.|++.|.+++..+++.+.++++|.+|++++|+|+..++++|.++|.+|.+|||+.|+.+++|.++||||+|+|++
T Consensus 297 SAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~~w~KVr~l~D~n 376 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGKSWCKVRALFDHN 376 (683)
T ss_pred ecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEechhhhhhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHH----HHHhHHH-----------hhhccC
Q 005218 413 GKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDR----VRKINEE-----------RTENLE 477 (708)
Q Consensus 413 ~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~----~~~~~~~-----------~~~~~~ 477 (708)
|+++++|.||+||+|.||+++|.+||.+..|+++++|+++...|+...+..+ ++..... ++....
T Consensus 377 Gk~i~~A~Ps~pv~V~GwkdlP~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~ 456 (683)
T KOG1145|consen 377 GKPIDEATPSQPVEVLGWKDLPIAGDEVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGEN 456 (683)
T ss_pred CCCccccCCCCceEeecccCCCCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999986643322 1111111 111000
Q ss_pred -----CCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCch
Q 005218 478 -----PSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPT 552 (708)
Q Consensus 478 -----~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~~ 552 (708)
.-+..+..+.+|+|||+|++||+|||.++|+.|++++|+++|++++||+||++|+++|+++.|+|++|||+.++.
T Consensus 457 ~~~~~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~~daiI~~FnV~~~~~ 536 (683)
T KOG1145|consen 457 IGRKTRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQASDAIIYGFNVKASPS 536 (683)
T ss_pred cccceecccccCCcceEEEEEecccchHHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHhcCcEEEEEecCCChH
Confidence 001112346799999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hHHHHHHHcCCeEEEcchhhhhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeC
Q 005218 553 SVSQAATQAGIKILMHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRS 632 (708)
Q Consensus 553 ~~~~~a~~~~V~i~~~~iIY~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~ 632 (708)
. +++|.+.||+|++|||||+|+||+++.|.++|||..+++++|+|+|+++|.++.+++ ...||||+|.+|+++++
T Consensus 537 ~-~~~a~~~gVkI~~~nVIY~LieDv~~~ls~rlp~v~e~~vvGea~Vl~~F~i~~~rk----r~~VAGC~V~~G~~~K~ 611 (683)
T KOG1145|consen 537 V-KQLAAAKGVKIRLYNVIYRLIEDVRELLSERLPPVEEQEVVGEAEVLATFDIREKRK----RVPVAGCRVNNGVIKKS 611 (683)
T ss_pred H-HHHHhccCceEeehhHHHHHHHHHHHHHHhhCCCceEEeeccceeeeeeEeeccccc----cccccceEeecceEeec
Confidence 6 899999999999999999999999999999999999999999999999999987521 14799999999999999
Q ss_pred CeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcccC-CCCCCCEEEEEEEEEecCccccccCCcee
Q 005218 633 STMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWH-DFQVGDIIQCLEQVLVKPKFISSESGTVR 705 (708)
Q Consensus 633 ~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~~-~~~~gD~ie~y~~~~~~~~~~~~~~~~~~ 705 (708)
+.||++|||++||+|.|.||||.|+||++|++|.||||.|++|+ +|++||+|+||+ +.+...+++-..
T Consensus 612 ~~~rlvR~g~vV~~G~l~SlKh~KedV~~vkkg~ECGl~~~d~~~~f~~GD~i~~ye-----~k~i~~e~~~~p 680 (683)
T KOG1145|consen 612 CKIRLVRNGKVVFEGELDSLKHLKEDVTEVKKGHECGLTFDDGNEDFKEGDKIQCYE-----KKRILEETSWVP 680 (683)
T ss_pred ceEEEEeCCcEEEEechhHHhhhhhhhhhhcCCCeeeeEeccCCcCCCcCCEEEEee-----hhhhhhhcccCC
Confidence 99999999999999999999999999999999999999999999 999999999999 445555554433
No 2
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.8e-101 Score=897.23 Aligned_cols=574 Identities=47% Similarity=0.745 Sum_probs=518.1
Q ss_pred cCCCceeecchhhHHHHHHHHhccCHHHHHHHHHhcccccccCCCCCChhHHHHHHHHhCCceeeecC---CCCCCCCCC
Q 005218 112 SSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVAELVVMELGFNVRRIHS---SEGTEILPR 188 (708)
Q Consensus 112 ~~~~~~v~~~~~~a~~~la~~l~~~~~~l~~~L~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~ 188 (708)
....+.|.+++.+++.+||..|+....++++.|+.++. +...++.++.+.++.++.+++..+..... ....++..|
T Consensus 211 ~~~~~~i~i~~~itv~ela~~~~~~~~~ii~~l~~~g~-~~~~n~~l~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~R 289 (787)
T PRK05306 211 EKIPREVVIPETITVAELAEKMAVKAAEVIKKLFKLGV-MATINQSLDQETAELLAEEFGHEVKLVSLLEDDDEEDLVPR 289 (787)
T ss_pred cccceeEEcCCCcCHHHHHHHHCCCHHHHHHHHHHcCC-eecCCCccCHHHHHHHHHHcCCEEEEccccccccccccccC
Confidence 34567899999999999999999999999999999886 44688899999999999999987765432 134457789
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
+|+|+|+||+|||||||+++|++..+...+.+|+|+++..+.+.+ ++..++|||||||+.|..++.++++.+|++||||
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVV 368 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET-NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVV 368 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE-CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEE
Confidence 999999999999999999999998888888899999999988888 7899999999999999999999999999999999
Q ss_pred EccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHH
Q 005218 269 AADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALL 348 (708)
Q Consensus 269 Da~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~ 348 (708)
|+++|+.+++.++|.++...++|+||++||+|+.+.+.+++...+...+...+.|++.++++++||++|.|+++|+++|.
T Consensus 369 dAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 369 AADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred ECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhh
Confidence 99999999999999999989999999999999987666666666666665566677778999999999999999999998
Q ss_pred HHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccceEEEEecccCCcccccCCCCcEEEe
Q 005218 349 LQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 349 ~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
...+.+.+..+++.|+.++|++++.+++.|.+++++|.+|+|++||.|++|+.+++|++|.+.+++.+++|.||++|.|.
T Consensus 449 ~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~~~gkVr~m~~~~~~~v~~A~pGd~V~I~ 528 (787)
T PRK05306 449 LQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYGRVRAMVDDNGKRVKEAGPSTPVEIL 528 (787)
T ss_pred hhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECCcEEEEEEEECCCCCCCCEEcCCCeEEEe
Confidence 87766667777888999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred ccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHH
Q 005218 429 GLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALK 508 (708)
Q Consensus 429 gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~ 508 (708)
||+++|.+||+|+++.++++|++++++|+...+...+..-....+..+.........+.+++|||||++||+|||.++|.
T Consensus 529 gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~ 608 (787)
T PRK05306 529 GLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLE 608 (787)
T ss_pred CCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHH
Confidence 99999999999999999999999999998766554432110011111111111224567999999999999999999999
Q ss_pred hCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCchhHHHHHHHcCCeEEEcchhhhhHHHHHHHHhhcCCC
Q 005218 509 TLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKILMHSIIYHLLDDFGNLVVDKAPG 588 (708)
Q Consensus 509 ~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~~~~~~~a~~~~V~i~~~~iIY~L~d~~~~~~~~~~~~ 588 (708)
+|.+++++++|++++||+||++||.+|++++|+||||||++++.+ +++|++.||+|++|+|||+|+|+++++|.++++|
T Consensus 609 ~l~~~~v~~~i~~~~vG~it~~Dv~la~~~~a~ii~Fnv~~~~~~-~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~ 687 (787)
T PRK05306 609 KLSTDEVKVNIIHSGVGAITESDVTLAAASNAIIIGFNVRPDAKA-RKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEP 687 (787)
T ss_pred hhcccCCceEEEeeccCCCCHHHHHHHHhcCCEEEEEcCCCCHHH-HHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCc
Confidence 999999999999999999999999999999999999999999988 8999999999999999999999999999999999
Q ss_pred ceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeE
Q 005218 589 TFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNEC 668 (708)
Q Consensus 589 ~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ec 668 (708)
.++++++|+|+|+++|++++.+ +||||+|++|+|++|+++||+|+|++||+|+|.||||+|+||+||.+|+||
T Consensus 688 ~~~e~~~g~a~v~~vF~~~k~~-------~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ec 760 (787)
T PRK05306 688 EYEEEIIGQAEVREVFKVSKVG-------TIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYEC 760 (787)
T ss_pred hhheeeeeeEEEEEEEecCCCC-------eEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEE
Confidence 9999999999999999998765 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCCCCCCCEEEEEEEEEecCc
Q 005218 669 GLVIRDWHDFQVGDIIQCLEQVLVKPK 695 (708)
Q Consensus 669 gi~~~~~~~~~~gD~ie~y~~~~~~~~ 695 (708)
||.|++|+||++||+||||+.++++++
T Consensus 761 gi~~~~~~d~~~gD~ie~~~~~~~~~~ 787 (787)
T PRK05306 761 GIGLENYNDIKEGDIIEAYEMVEVKRT 787 (787)
T ss_pred EEEeeccccCCCCCEEEEEEEEEecCC
Confidence 999999999999999999999998864
No 3
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=1.6e-100 Score=873.70 Aligned_cols=573 Identities=45% Similarity=0.714 Sum_probs=510.9
Q ss_pred CceeecchhhHHHHHHHHhccCHHHHHHHHHhcccccccCCCCCChhHHHHHHHHhCCceeeec-----------CCCCC
Q 005218 115 DKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVAELVVMELGFNVRRIH-----------SSEGT 183 (708)
Q Consensus 115 ~~~v~~~~~~a~~~la~~l~~~~~~l~~~L~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~ 183 (708)
++.+.+++.+++.+||..++....++++.|+.++.. ...++.++.|.++.++.+++..+.... .....
T Consensus 3 ~~~~~~~~~~~v~~la~~~~~~~~~~~~~l~~~g~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (587)
T TIGR00487 3 PSVIVIGGTLTVSELANKMNIKVSDIIKKLMLLGVM-VTINQVLDKETAELVAEEFGVKVEVRVTLEETEAEEQDEDSGD 81 (587)
T ss_pred ceEEEeCCCeEHHHHHHHHCcCHHHHHHHHHHCCCE-ecCCcCcCHHHHHHHHHHhCCceEEeccchhhhhhcccccccc
Confidence 456888999999999999999999999999999874 467889999999999999987654321 11123
Q ss_pred CCCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccE
Q 005218 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDI 263 (708)
Q Consensus 184 ~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDi 263 (708)
.+.+++++|+++||+|||||||+++|++..+...+.+|+|+++..+.+.+.++..++|||||||++|..++.+++..+|+
T Consensus 82 ~~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 82 LLVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCE
Confidence 46679999999999999999999999999888888899999999888887444499999999999999999999999999
Q ss_pred EEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 264 VVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 264 vllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+++|+|++++..+|+.+++..+...++|+|+++||+|+.+.+++++...+...+.....|++..+++++||++|.|+++|
T Consensus 162 aILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eL 241 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDEL 241 (587)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHH
Confidence 99999999999999999999988889999999999999876666777777666665566777789999999999999999
Q ss_pred HHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccceEEEEecccCCcccccCCCC
Q 005218 344 EVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAM 423 (708)
Q Consensus 344 ~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~kVr~i~~~~~~~v~~a~~g~ 423 (708)
+++|..+.+...++.+++.|+.++|++++.+++.|.++++++.+|+|++||.|++|+.+++||+|.+.+++.+++|.||+
T Consensus 242 l~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~~~kVr~l~~~~g~~v~~a~~g~ 321 (587)
T TIGR00487 242 LDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAAYGRVRAMIDENGKSVKEAGPSK 321 (587)
T ss_pred HHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCCccEEEEEECCCCCCCCEECCCC
Confidence 99998776666666777899999999999999999999999999999999999999999999999998999999999999
Q ss_pred cEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHH
Q 005218 424 PVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAV 503 (708)
Q Consensus 424 ~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi 503 (708)
+|.|.||+++|.+||+|.+++++++|++++++|++..++..+..-....+............+.+++|||||++||+|||
T Consensus 322 ~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal 401 (587)
T TIGR00487 322 PVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAI 401 (587)
T ss_pred EEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHH
Confidence 99999999999999999999999999999999876554332210000000111100011245789999999999999999
Q ss_pred HHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCchhHHHHHHHcCCeEEEcchhhhhHHHHHHHHh
Q 005218 504 TDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKILMHSIIYHLLDDFGNLVV 583 (708)
Q Consensus 504 ~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~~~~~~~a~~~~V~i~~~~iIY~L~d~~~~~~~ 583 (708)
.++|.++++++++++|++++||+||++||.+|++++|+||||||++++++ +++|++.||+|++|+|||||+|+++++|+
T Consensus 402 ~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~Fnv~~~~~~-~~~a~~~~v~i~~~~iIY~l~d~~~~~~~ 480 (587)
T TIGR00487 402 KNSLEKLNNEEVKVKVIHSGVGGITETDISLASASNAIIIGFNVRPDATA-KNVAEAENVDIRYYSVIYKLIDEIRAAMK 480 (587)
T ss_pred HHHHHhhcccCCeEEEEEeecCCCchhhHHHHHhcCCEEEEEecCCCHHH-HHHHHHcCCeEEEeChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred hcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceec
Q 005218 584 DKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVA 663 (708)
Q Consensus 584 ~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~ 663 (708)
++++|.++++++|+|+|+++|++++.+ +||||+|++|++++|+++||+|+|++||.|+|.||||+|+||+||+
T Consensus 481 ~~~~~~~~~~~~g~a~v~~vf~~~~~~-------~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~ 553 (587)
T TIGR00487 481 GMLDPEYEEEIIGQAEVRQVFNVPKIG-------NIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVS 553 (587)
T ss_pred hccCcceeeEeeeeEEEEEEEecCCCC-------EEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEEC
Confidence 999999999999999999999988644 9999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEcccCCCCCCCEEEEEEEEEecCcc
Q 005218 664 KGNECGLVIRDWHDFQVGDIIQCLEQVLVKPKF 696 (708)
Q Consensus 664 kG~ecgi~~~~~~~~~~gD~ie~y~~~~~~~~~ 696 (708)
+|+||||.|++|+||++||+||||+.++++++|
T Consensus 554 ~g~ecgi~~~~~~~~~~gD~i~~~~~~~~~~~l 586 (587)
T TIGR00487 554 NGYECGIGIKNYNDIKEGDIIEAFEVQEVKRTL 586 (587)
T ss_pred CCCEEEEEEeccccCCCCCEEEEEEEEEecccc
Confidence 999999999999999999999999999999876
No 4
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-100 Score=827.52 Aligned_cols=500 Identities=48% Similarity=0.747 Sum_probs=469.9
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec--CCeeEEEeeCCCcchhhhhhhcccccccE
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDI 263 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~--~g~~v~liDTpG~~~f~~~~~~~~~~aDi 263 (708)
..|+|.|++|||++|||||||+++++.+++..+.+|+|++++.+.+.++ +...++|+|||||+.|+.||.++.+.+|+
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 3589999999999999999999999999999999999999999999986 34899999999999999999999999999
Q ss_pred EEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 264 VVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 264 vllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
++||+|+++|+++||.+.+++++..++|+||++||+|+++.+++.+..++.++++..+.|++.+.++++||++|+|+++|
T Consensus 82 aILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eL 161 (509)
T COG0532 82 AILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDEL 161 (509)
T ss_pred EEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccceEEEEecccCCcccccCCCC
Q 005218 344 EVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAM 423 (708)
Q Consensus 344 ~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~kVr~i~~~~~~~v~~a~~g~ 423 (708)
++.|..+++.++++..++.++.++++++..++|+|.+++.++++|+|+.||.+++|..+|+|++|.+..+++++.+.|+.
T Consensus 162 L~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~ 241 (509)
T COG0532 162 LELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSK 241 (509)
T ss_pred HHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhH--HHHH--HH-HHhHHHhhhccCCCCCCCCCccccEEEEecccc
Q 005218 424 PVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKK--FEKD--RV-RKINEERTENLEPSEDVPKRAEMPVIVKADVQG 498 (708)
Q Consensus 424 ~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~--~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~G 498 (708)
++.+.|++++|.+|+.++++++++.|+.+++.|... .+.. .. .++++. ..... ...+.+.+|+|||||++|
T Consensus 242 ~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~k~~~viiKaDt~G 317 (509)
T COG0532 242 PVEILGLSEVPAAGDVFIVVKDEKKARAIAELRVVLLREAELASKKKGELEEL-IAEIK---IRGELKELNVILKADTQG 317 (509)
T ss_pred CeEEeccccccccCceEEecCChHHHhhhhhHhhhhhhhhhhhhHHHHHHHHH-HHhhh---ccCCcceecEEEEEcccc
Confidence 999999999999999999999999999999998855 2111 11 011111 01111 012467799999999999
Q ss_pred cHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCchhHHHHHHHcCCeEEEcchhhhhHHHH
Q 005218 499 TVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKILMHSIIYHLLDDF 578 (708)
Q Consensus 499 slEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~~~~~~~a~~~~V~i~~~~iIY~L~d~~ 578 (708)
|+|||..+|+++..++++++|++++||+||++||.+|++++|+|+||||++++.+ +++|+..+|+|++|+|||+|+|++
T Consensus 318 SlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~as~avIigFnV~~~~~a-~~~ae~~~V~I~~~~iIY~lied~ 396 (509)
T COG0532 318 SLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASDAVIIGFNVRVDPEA-RRLAESEGVKIRYYDVIYKLIEDV 396 (509)
T ss_pred hHHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHHhcCCEEEEEecCCCHHH-HHHHHhcCCcEEEcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988 899999999999999999999999
Q ss_pred HHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccc
Q 005218 579 GNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQD 658 (708)
Q Consensus 579 ~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~ 658 (708)
+++|+++|+|.+++++.|.|+++++|.+++.+ .||||+|++|++++|+++|++|||.+||+|+|.||||+|+|
T Consensus 397 ~~~~~g~l~p~~~e~~~g~~~~r~v~~~~k~g-------~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kdd 469 (509)
T COG0532 397 EAAMKGMLEPEKKERVIGLAEVRAVFKLPKVG-------AIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDD 469 (509)
T ss_pred HHHHHhccchhhhhhcccceEEEEEEEcCCCC-------eEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCcc
Confidence 99999999999999999999999999999854 99999999999999999999999999999999999999999
Q ss_pred cceeccCCeEEEEEcccCCCCCCCEEEEEEEEEecCccc
Q 005218 659 VDTVAKGNECGLVIRDWHDFQVGDIIQCLEQVLVKPKFI 697 (708)
Q Consensus 659 V~ev~kG~ecgi~~~~~~~~~~gD~ie~y~~~~~~~~~~ 697 (708)
|+||++|+||||.|++|+|+++||+||+|+.++.++++.
T Consensus 470 v~ev~~G~ecgI~i~~~~di~~gD~le~~~~~~~~r~l~ 508 (509)
T COG0532 470 VKEVRKGQECGIAIENYRDIKEGDILEVFEPVEVKRTLK 508 (509)
T ss_pred HhHhccCcEEEEEecCcccCCCCCEEEEEEEEeechhhc
Confidence 999999999999999999999999999999999998774
No 5
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=5.3e-99 Score=870.69 Aligned_cols=571 Identities=37% Similarity=0.606 Sum_probs=507.3
Q ss_pred CCCceeecchhhHHHHHHHHhccCHHHHHHHHHhcccccccCCCCCChhHHHHHHHHhCCceeeecC-----------C-
Q 005218 113 SQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVAELVVMELGFNVRRIHS-----------S- 180 (708)
Q Consensus 113 ~~~~~v~~~~~~a~~~la~~l~~~~~~l~~~L~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~- 180 (708)
..++.+.++..+++.+||..|+....++++.|+.++. +...++.++.+.++.++.+++..+..... .
T Consensus 155 ~~~~~i~~~~~~tv~~la~~~~~~~~~ii~~l~~~g~-~~~~n~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 233 (742)
T CHL00189 155 NKPKSISIHSPLTIQELSTLLCIPETEIIKSLFLKGI-SVTVNQIIDISIISQVADDFGINIISEEKNNINEKTSNLDNT 233 (742)
T ss_pred CCCeeEEeCCCcCHHHHHHHHCcCHHHHHHHHHHcCc-CccCCCccCHHHHHHHHHHcCCeEEEeccchhhhhhhccccc
Confidence 4567899999999999999999999999999999986 45688899999999999999876543210 0
Q ss_pred --CCCCCCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec---CCeeEEEeeCCCcchhhhhhh
Q 005218 181 --EGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS---TGASITFLDTPGHAAFSAMRK 255 (708)
Q Consensus 181 --~~~~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~---~g~~v~liDTpG~~~f~~~~~ 255 (708)
...++.+++++|+|+||+|||||||+++|++..+...+.+|+|+++..+.+.+. .+..++|||||||+.|..++.
T Consensus 234 ~~~~~~l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~ 313 (742)
T CHL00189 234 SAFTENSINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRS 313 (742)
T ss_pred ccchhhhcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHH
Confidence 123466799999999999999999999999998888888999999887766653 358999999999999999999
Q ss_pred cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeee
Q 005218 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
+++..+|++|||+|++++..+|+.+++..+...++|+|+++||+|+...+.+++.+.+...+...+.+++.+|++++||+
T Consensus 314 rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 314 RGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred HHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 99999999999999999999999999999988999999999999998665555666665554444556667899999999
Q ss_pred cCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccceEEEEecccCCc
Q 005218 336 KKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKS 415 (708)
Q Consensus 336 tg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~kVr~i~~~~~~~ 415 (708)
+|.|+++|+++|..+.+...++.+++.|+.++++++..+++.|.+++++|.+|+|++||.|++|+.+|+|++|.+..+..
T Consensus 394 tG~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~~~gkVr~m~~~~~~~ 473 (742)
T CHL00189 394 QGTNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGTSYAKIRGMINSLGNK 473 (742)
T ss_pred CCCCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECCcceEEEEEEcCCCcC
Confidence 99999999999998877667777778899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEec
Q 005218 416 TDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKAD 495 (708)
Q Consensus 416 v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad 495 (708)
+++|.||++|.|.||++.|.+||+|.+++++++|+.+++.|....+...-..+. +............+.+|+|||||
T Consensus 474 v~~a~pgdiV~I~gl~~~~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iiKad 550 (742)
T CHL00189 474 INLATPSSVVEIWGLSSVPATGEHFQVFNSEKEAKLKIIKNKENNKKDTTKRIT---LSTTKTINKKDNKKQINLIIKTD 550 (742)
T ss_pred ccEEcCCCceEecCcccCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc---hHHHHHHhhhcCCceeeEEEEeC
Confidence 999999999999999989999999999999999999998876544321111010 00000001122567899999999
Q ss_pred ccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCchhHHHHHHHcCCeEEEcchhhhhH
Q 005218 496 VQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKILMHSIIYHLL 575 (708)
Q Consensus 496 ~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~~~~~~~a~~~~V~i~~~~iIY~L~ 575 (708)
++||+|||.++|.++++++|+++|++++||+||++||.+|++++|+||||||++++++ +++|++.||+|++|+|||+|+
T Consensus 551 ~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~it~~Dv~lA~~~~a~ii~Fnv~~~~~~-~~~a~~~~v~i~~~~iIY~li 629 (742)
T CHL00189 551 TQGSIEAIINSISQIPQKKVQLNILYASLGEVTETDVEFASTTNAEILAFNTNLAPGA-KKAARKLNIIIKEYQVIYDLL 629 (742)
T ss_pred CcchHHHHHHHHHhcCCCcEEEEEEEeecCCCCHHHHHHHHhcCCEEEEeeCCCCHHH-HHHHHHcCCEEEEeChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 899999999999999999999
Q ss_pred HHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeecc
Q 005218 576 DDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKRE 655 (708)
Q Consensus 576 d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~ 655 (708)
|+++++|+++++|.++++++|+|+|+++|++++ + +||||+|++|.+++|+++||+|+|++||+|+|.||||+
T Consensus 630 d~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k-~-------~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~ 701 (742)
T CHL00189 630 EYIEALMEDLLDPEYKKVPIGEAEVKTVFPLAK-R-------FVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRV 701 (742)
T ss_pred HHHHHHHhhccCceeeeeeceeEEeeEEEecCC-C-------EEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhc
Confidence 999999999999999999999999999999885 3 89999999999999999999999999999999999999
Q ss_pred ccccceeccCCeEEEEEcccCCCCCCCEEEEEEEEEecCcc
Q 005218 656 KQDVDTVAKGNECGLVIRDWHDFQVGDIIQCLEQVLVKPKF 696 (708)
Q Consensus 656 k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie~y~~~~~~~~~ 696 (708)
|+||+||.+|+||||.|++|+||++||+||||+.++++++|
T Consensus 702 k~~v~ev~~g~ecgi~i~~~~d~~~gD~ie~y~~~~~~~~l 742 (742)
T CHL00189 702 KEDVEEAQEGNECGIFIEEFQLWQSGDKIHAFELIPKKKSL 742 (742)
T ss_pred CccccEeCCCCEEEEEeeCCCCCCcCCEEEEEEEEEecCCC
Confidence 99999999999999999999999999999999999998865
No 6
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.8e-80 Score=708.72 Aligned_cols=474 Identities=33% Similarity=0.518 Sum_probs=400.6
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC-----C-------e-----eEEEeeCCCcc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-----G-------A-----SITFLDTPGHA 248 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~-----g-------~-----~v~liDTpG~~ 248 (708)
..|+|.|+++||+|||||||+|+|++..+...+.+++|++++........ + . .++|||||||+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 35889999999999999999999998887778888999998766554310 1 1 27899999999
Q ss_pred hhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCC-CCc--------------ch-----
Q 005218 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA-ADP--------------ER----- 308 (708)
Q Consensus 249 ~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~-~~~--------------~~----- 308 (708)
.|..++.++++.+|++++|+|+++++.+++.+.+..+...++|+++++||+|+.. +.. ..
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f 162 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQEL 162 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999999988888999999999999852 110 01
Q ss_pred ------hhhhhhhcccchh------ccCCcceEEEEeeecCCCchhHHHHHHHHHHH---cccccccCCCcceeEEEEEe
Q 005218 309 ------VKNQLGAEGLELE------DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM---MNLKARVDGPAQAYVVEARL 373 (708)
Q Consensus 309 ------~~~~l~~~~~~~~------~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~---~~~~~~~~~p~~~~V~e~~~ 373 (708)
+...+...++..+ .+++.++++++||++|.|+++|++.+...++. ..+..+++.|+.++|++++.
T Consensus 163 ~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~ 242 (586)
T PRK04004 163 EEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKE 242 (586)
T ss_pred HHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEE
Confidence 1122333343332 45677899999999999999999998765432 23455677899999999999
Q ss_pred eCCCCcEEEEEEEeeEEcCCCEEEEccccc----eEEEEecc-----------cCCcccccCCCCcEEEe--ccCCCCCC
Q 005218 374 DKGRGPLTTAIVKAGTLVCGQHVVVGHEWG----RIRAIRDM-----------VGKSTDKARPAMPVEIE--GLKGLPMA 436 (708)
Q Consensus 374 ~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~----kVr~i~~~-----------~~~~v~~a~~g~~V~i~--gl~~~~~~ 436 (708)
+++.|+++++++.+|+|++||.|++++.++ +||+|.+. .++.++++.|+.+|.|. ||.++ .+
T Consensus 243 ~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~-~~ 321 (586)
T PRK04004 243 ERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDA-LA 321 (586)
T ss_pred eCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCcccc-CC
Confidence 999999999999999999999999999876 89999976 46788999999999986 99988 89
Q ss_pred CCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceE
Q 005218 437 GDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLF 516 (708)
Q Consensus 437 Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~ 516 (708)
|+.|.++.+++ +..+ ++...+ .+.. .. ...+.+|+|||||++||+|||+++|.++.
T Consensus 322 g~~~~v~~~~~-~~~~---~~~~~~--~~~~--------~~-----~~~~~~~vivkad~~Gs~EAi~~~l~~~~----- 377 (586)
T PRK04004 322 GSPLRVVRDED-VEEV---KEEVEE--EIEE--------IR-----IETDEEGVVVKADTLGSLEALVNELREEG----- 377 (586)
T ss_pred CCeEEEeCcHH-HHHH---HHHHHH--HHHh--------cc-----ccccccCEEEEeCCccHHHHHHHHHHhCC-----
Confidence 99999998853 3222 211111 0100 00 13568999999999999999999999764
Q ss_pred EEEEEecCCCCCHhhHHhHHhc------CCEEEEeCCCCCchhHHHHHHHcCCeEEEcchhhhhHHHHHHHHhhcCCCce
Q 005218 517 VNVVHVGVGSVTQSDVDLAQAC------GACIVGFNVKSPPTSVSQAATQAGIKILMHSIIYHLLDDFGNLVVDKAPGTF 590 (708)
Q Consensus 517 i~Iv~~~VG~it~sDv~~A~~~------~a~Il~Fnv~~~~~~~~~~a~~~~V~i~~~~iIY~L~d~~~~~~~~~~~~~~ 590 (708)
++|++++||+||++||.+|+++ +|+||||||++++++ +++|++.||+|++|+|||||+|+++++|.++++|..
T Consensus 378 i~i~~~~vG~it~~Dv~lA~~~~~~~~~~a~Il~FnV~~~~~a-~~~A~~~~V~I~~~~iIY~lid~~~~~~~~~~~~~~ 456 (586)
T PRK04004 378 IPIRKADVGDISKRDVIEASTVAEKDPLYGVILAFNVKVLPDA-EEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEK 456 (586)
T ss_pred CCEEEeccCCCCHHHHHHHHhhhccCCCceEEEEecCCCCHHH-HHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhcchh
Confidence 8999999999999999999999 999999999999998 899999999999999999999999999999988764
Q ss_pred e---eeeeeceeEe----eEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEee-CCeEEEEEEEeeeecccccccee
Q 005218 591 E---TQVAGEAEVL----NIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLR-SGEVVFEGSCISLKREKQDVDTV 662 (708)
Q Consensus 591 ~---~~~~g~a~v~----~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R-~~~~i~~g~i~slk~~k~~V~ev 662 (708)
. ++++|.|+|+ ++|+.++ +.||||+|++|++++|++ |+| +|+.+ |+|.||||+|+||+||
T Consensus 457 ~~~~~~~~g~a~v~il~~~vf~~~~--------~~IaGc~V~~G~i~~~~~--v~r~~g~~i--G~i~Slk~~k~~V~ev 524 (586)
T PRK04004 457 EKILEKIVRPAKIRILPGYVFRQSD--------PAIVGVEVLGGTIKPGVP--LIKEDGKRV--GTIKQIQDQGENVKEA 524 (586)
T ss_pred hhhhheeeceEEEEEccceeEecCC--------CeEEEEEEEeCEEecCCE--EEEECCEEE--EEEehhhccCCcccEe
Confidence 4 6889999999 7888654 599999999999999985 789 88655 9999999999999999
Q ss_pred ccCCeEEEEEccc---CCCCCCCEEEEEEEEEecCccc
Q 005218 663 AKGNECGLVIRDW---HDFQVGDIIQCLEQVLVKPKFI 697 (708)
Q Consensus 663 ~kG~ecgi~~~~~---~~~~~gD~ie~y~~~~~~~~~~ 697 (708)
++|+||||.|++| +||++||+|+||...+..+.|.
T Consensus 525 ~~G~Ecgi~i~~~~~g~~~~~gD~i~~~~~~~~~~~l~ 562 (586)
T PRK04004 525 KAGMEVAISIDGPTVGRQIKEGDILYVDIPEEHAKILE 562 (586)
T ss_pred CCCCEEEEEEecccccCCCCCCCEEEEEEEehhHHHHH
Confidence 9999999999999 8999999999999988877665
No 7
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=2.1e-78 Score=690.42 Aligned_cols=462 Identities=32% Similarity=0.518 Sum_probs=387.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC-----------------eeEEEeeCCCcchh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG-----------------ASITFLDTPGHAAF 250 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g-----------------~~v~liDTpG~~~f 250 (708)
|+|.|+++||+|||||||+|+|++..+...+.+|+|+++....+..+.. ..++|||||||+.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 6889999999999999999999999888788888999888776654211 13899999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCC---------------cchhh-----
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD---------------PERVK----- 310 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~---------------~~~~~----- 310 (708)
..++.++++.+|++++|+|++++..+++.+.+..+...++|+++++||+|+.... ...+.
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~ 162 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDT 162 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999999998888899999999999996310 00111
Q ss_pred ------hhhhhcccchh------ccCCcceEEEEeeecCCCchhHHHHHHHHHHH---cccccccCCCcceeEEEEEeeC
Q 005218 311 ------NQLGAEGLELE------DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM---MNLKARVDGPAQAYVVEARLDK 375 (708)
Q Consensus 311 ------~~l~~~~~~~~------~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~---~~~~~~~~~p~~~~V~e~~~~~ 375 (708)
.++.++++..+ .|++.++++++||+||+|+++|+++|....+. ..++.+++.|+.++|++++.++
T Consensus 163 ~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~ 242 (590)
T TIGR00491 163 KVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEET 242 (590)
T ss_pred HHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEcC
Confidence 12344444433 46678999999999999999999999765543 2455667889999999999999
Q ss_pred CCCcEEEEEEEeeEEcCCCEEEEccccc----eEEEEecccC-----------CcccccCCCCcE--EEeccCCCCCCCC
Q 005218 376 GRGPLTTAIVKAGTLVCGQHVVVGHEWG----RIRAIRDMVG-----------KSTDKARPAMPV--EIEGLKGLPMAGD 438 (708)
Q Consensus 376 ~~G~v~~~~V~~G~L~~gd~v~~g~~~~----kVr~i~~~~~-----------~~v~~a~~g~~V--~i~gl~~~~~~Gd 438 (708)
|.|+++++++.+|+|++||.|++|+.++ +||+|.+..+ ..+.++.|+.++ .+.||.+ +.+|+
T Consensus 243 G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~-~~aG~ 321 (590)
T TIGR00491 243 GLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD-VMAGS 321 (590)
T ss_pred CCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC-CCCCC
Confidence 9999999999999999999999999875 9999998752 467776666554 5578887 48999
Q ss_pred eEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEE
Q 005218 439 DIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVN 518 (708)
Q Consensus 439 ~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~ 518 (708)
.|.++++++.. +.++...+. .+ . . ..+.+.+|+|||||++||+|||.++|.+++ ++
T Consensus 322 ~~~~~~~e~~~----~~~~~~~~~--~~---~-----~-----~~~~~~~~vivkad~~Gs~EAl~~~l~~~~-----i~ 377 (590)
T TIGR00491 322 PIRVVTDEEIE----KVKEEILKE--VE---E-----I-----KIDTDEEGVVVKADTLGSLEALVNELRDMG-----VP 377 (590)
T ss_pred EEEEcCcHHHH----HHHHHHHHH--hh---h-----c-----ccccccccEEEEecCcchHHHHHHHHHhCC-----Cc
Confidence 99888766421 111111110 00 0 0 013567999999999999999999999876 88
Q ss_pred EEEecCCCCCHhhHHhHHhcC------CEEEEeCCCCCchhHHHHHHHcCCeEEEcchhhhhHHHHHHHHhhcCCCcee-
Q 005218 519 VVHVGVGSVTQSDVDLAQACG------ACIVGFNVKSPPTSVSQAATQAGIKILMHSIIYHLLDDFGNLVVDKAPGTFE- 591 (708)
Q Consensus 519 Iv~~~VG~it~sDv~~A~~~~------a~Il~Fnv~~~~~~~~~~a~~~~V~i~~~~iIY~L~d~~~~~~~~~~~~~~~- 591 (708)
|++++||+||++||.+|++++ |+||||||++++++ +++|+++||+|++|+|||||+|+++++|+++++|.++
T Consensus 378 i~~~~vG~it~~Dv~~A~~~~~~~~~~a~Il~Fnv~~~~~a-~~~A~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~ 456 (590)
T TIGR00491 378 IKKADIGDVSKRDVVEAGIAKQEDRVYGAIIAFNVKVLPGA-EQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRK 456 (590)
T ss_pred EEEecCCCCcHhHHHHHhhcccCCCCceEEEEecCCCCHHH-HHHHHHcCCEEEEeCcHHHHHHHHHHHHHhhhcchhhh
Confidence 999999999999999999985 99999999999998 8999999999999999999999999999999998765
Q ss_pred --eeeeeceeEe----eEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEee-CCeEEEEEEEeeeeccccccceecc
Q 005218 592 --TQVAGEAEVL----NIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLR-SGEVVFEGSCISLKREKQDVDTVAK 664 (708)
Q Consensus 592 --~~~~g~a~v~----~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R-~~~~i~~g~i~slk~~k~~V~ev~k 664 (708)
++++|.|+|+ ++|+.++ |.||||+|++|+|++|++ |+| +|.++ |+|.||||+|+||+||++
T Consensus 457 ~~~~~~~~a~v~il~~~vf~~~~--------~~i~G~~V~~G~i~~~~~--v~r~~~~~i--G~i~slk~~k~~V~ev~~ 524 (590)
T TIGR00491 457 WMEAIIKPAKIRLIPKLVFRQSK--------PAIVGVEVLTGVIRQGYP--LMKDDGETV--GTVRSMQDKGENVKSASA 524 (590)
T ss_pred hcceeEEEEEEEEeeheeeeCCC--------CeEEEEEEecCEEecCCe--EEecCCEEE--EEEchhcccCccccEECC
Confidence 7899999999 7888654 599999999999999985 577 46655 999999999999999999
Q ss_pred CCeEEEEEccc---CCCCCCCEEEEE
Q 005218 665 GNECGLVIRDW---HDFQVGDIIQCL 687 (708)
Q Consensus 665 G~ecgi~~~~~---~~~~~gD~ie~y 687 (708)
|+||||.|++| ++|++||+|++.
T Consensus 525 G~Ecgi~i~~~~~g~~~~~gD~l~~~ 550 (590)
T TIGR00491 525 GQEVAIAIKDVVYGRTIHEGDTLYVD 550 (590)
T ss_pred CCEEEEEEeCccccCCCCCCCEEEEe
Confidence 99999999998 899999999875
No 8
>PRK14845 translation initiation factor IF-2; Provisional
Probab=100.00 E-value=5.7e-72 Score=662.76 Aligned_cols=451 Identities=30% Similarity=0.476 Sum_probs=385.5
Q ss_pred chHHHHHhhcCcccccccCceEEeeeEEEEEecCCe-----------------eEEEeeCCCcchhhhhhhcccccccEE
Q 005218 202 KTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGA-----------------SITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 202 KSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~-----------------~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
|||||++|++.+++..+.+|+|++++++.+.++.+. .++|||||||+.|..++.+++..+|++
T Consensus 474 KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDiv 553 (1049)
T PRK14845 474 NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLA 553 (1049)
T ss_pred cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEE
Confidence 999999999999999999999999999988874211 289999999999999999999999999
Q ss_pred EEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC-CCCc--------------chhhh-----------hhhhccc
Q 005218 265 VLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP-AADP--------------ERVKN-----------QLGAEGL 318 (708)
Q Consensus 265 llVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~-~~~~--------------~~~~~-----------~l~~~~~ 318 (708)
++|+|+++++.+++.+.+..+...++|+|+|+||+|+. +++. ++..+ ++.+.++
T Consensus 554 lLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~ 633 (1049)
T PRK14845 554 VLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGF 633 (1049)
T ss_pred EEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 99999999999999999999988899999999999995 3321 11111 1233443
Q ss_pred ch------hccCCcceEEEEeeecCCCchhHHHHHHHHHHH---cccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeE
Q 005218 319 EL------EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM---MNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGT 389 (708)
Q Consensus 319 ~~------~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~---~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~ 389 (708)
.. +.|++.++++++||+||+||++|+++|..+++. ..+..+++.|+.++|++++.+++.|+++++++.+|+
T Consensus 634 ~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~ 713 (1049)
T PRK14845 634 DADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGT 713 (1049)
T ss_pred chhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCE
Confidence 32 356778999999999999999999998776553 235566788999999999999999999999999999
Q ss_pred EcCCCEEEEccc----cceEEEEecc-----------cCCcccccCCCCcEEEe--ccCCCCCCCCeEEEeCCHHHHHHh
Q 005218 390 LVCGQHVVVGHE----WGRIRAIRDM-----------VGKSTDKARPAMPVEIE--GLKGLPMAGDDIIVVDSEERARML 452 (708)
Q Consensus 390 L~~gd~v~~g~~----~~kVr~i~~~-----------~~~~v~~a~~g~~V~i~--gl~~~~~~Gd~~~~v~~~~~a~~~ 452 (708)
|++||.|++|+. +++||+|.+. .+..++++.|+.+|.|. ||.++ .+|+.|.++.++++++.+
T Consensus 714 Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~-~aG~~~~v~~~e~~~~~~ 792 (1049)
T PRK14845 714 LRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV-LAGSPIRIVPTKEKIEKA 792 (1049)
T ss_pred EecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcccc-CCCCeEEEeCCHHHHHHH
Confidence 999999999986 7999999853 24578999999999996 89887 899999999999887653
Q ss_pred hhhhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhH
Q 005218 453 SSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDV 532 (708)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv 532 (708)
.+ ...+ ++... ..+.+.+|+|||||++||+|||.++|++++ ++|++++||+||++||
T Consensus 793 ~~---~~~~-----~~~~~----------~~~~~~~~vivKaDt~GSlEAl~~~L~~~~-----i~i~~~~vG~it~~DV 849 (1049)
T PRK14845 793 KE---EVMK-----EVEEA----------KIETDKEGILIKADTLGSLEALANELRKAG-----IPIKKAEVGDITKKDV 849 (1049)
T ss_pred HH---HHHH-----HHhhh----------ccCcceeeEEEEecccchHHHHHHHHHhCC-----CCEEEeeCCCCCHHHH
Confidence 21 1111 11000 013567999999999999999999999875 8999999999999999
Q ss_pred HhHHh------cCCEEEEeCCCCCchhHHHHHHHcCCeEEEcchhhhhHHHHHHHHhhcCCCcee---eeeeeceeEe--
Q 005218 533 DLAQA------CGACIVGFNVKSPPTSVSQAATQAGIKILMHSIIYHLLDDFGNLVVDKAPGTFE---TQVAGEAEVL-- 601 (708)
Q Consensus 533 ~~A~~------~~a~Il~Fnv~~~~~~~~~~a~~~~V~i~~~~iIY~L~d~~~~~~~~~~~~~~~---~~~~g~a~v~-- 601 (708)
.+|++ .+|+||||||++++++ +++|++.||+|++|+|||||+|+++++|+++++|..+ +.++|.|+|+
T Consensus 850 ~~A~~~~~~~~~~a~Il~FnV~v~~~a-~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~~~~~~~~~~~~~~~~p~~v~il 928 (1049)
T PRK14845 850 IEALSYKQENPLYGVILGFNVKVLPEA-QEEAEKYGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLL 928 (1049)
T ss_pred HHHHhhhccCCCCcEEEEecCCCCHHH-HHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhchhhhhhhhcccCceEEEec
Confidence 99999 4799999999999998 8999999999999999999999999999999998744 5689999999
Q ss_pred --eEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEee-CCeEEEEEEEeeeeccccccceeccCCeEEEEEccc---
Q 005218 602 --NIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLR-SGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--- 675 (708)
Q Consensus 602 --~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R-~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--- 675 (708)
++|+.++ |.||||+|++|++++|+ +|+| +|.++ |+|.||||+|++|+||++|+||||.|+++
T Consensus 929 p~~vF~~~~--------~~IaG~~V~~G~i~~~~--~l~r~~~~~i--G~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~g 996 (1049)
T PRK14845 929 PDCIFRRSN--------PAIVGVEVLEGTLRVGV--TLIKEDGMKV--GTVRSIKDRGENVKEAKAGKAVAIAIEGAILG 996 (1049)
T ss_pred cceEEeCCC--------CeEEEEEEeeCEEecCc--EEEecCCEEE--EEEchHhccCccccEeCCCCEEEEEEeccccc
Confidence 8998764 59999999999999996 5678 55554 99999999999999999999999999997
Q ss_pred CCCCCCCEEEEEEE
Q 005218 676 HDFQVGDIIQCLEQ 689 (708)
Q Consensus 676 ~~~~~gD~ie~y~~ 689 (708)
++|++||++.++-.
T Consensus 997 r~~~~gD~l~~~i~ 1010 (1049)
T PRK14845 997 RHVDEGETLYVDVP 1010 (1049)
T ss_pred CCCCCCCEEEEecC
Confidence 59999999988743
No 9
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-56 Score=489.52 Aligned_cols=473 Identities=29% Similarity=0.447 Sum_probs=380.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-----------------CCeeEEEeeCCCcchh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-----------------TGASITFLDTPGHAAF 250 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-----------------~g~~v~liDTpG~~~f 250 (708)
|.|.+||+||+++|||-|++.|++.++..++.+|+|+.++..++... .-..+.+||||||+.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 67899999999999999999999999999999999999998887652 1124889999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCC-C--Cc---------------------
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA-A--DP--------------------- 306 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~-~--~~--------------------- 306 (708)
+.++.++...||++|+|+|..+|+.+|+++.++.++..+.|+||++||+|... + .+
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~ 633 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKE 633 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999852 1 10
Q ss_pred --chhhhhhhhcccchh------ccCCcceEEEEeeecCCCchhHHHHHHHHHHH-cccccccCCCcceeEEEEEeeCCC
Q 005218 307 --ERVKNQLGAEGLELE------DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM-MNLKARVDGPAQAYVVEARLDKGR 377 (708)
Q Consensus 307 --~~~~~~l~~~~~~~~------~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~-~~~~~~~~~p~~~~V~e~~~~~~~ 377 (708)
..+..++.++++... ..+..+.++|+||.+|+||.+|+-+|..+++. +..+......+.+.|+++...+|.
T Consensus 634 R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~ 713 (1064)
T KOG1144|consen 634 RLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGH 713 (1064)
T ss_pred HHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCC
Confidence 111222333343322 23446789999999999999999999987753 333344566789999999999999
Q ss_pred CcEEEEEEEeeEEcCCCEEEEccccc----eEEEEeccc--------C--CcccccCCCCcEEEe--ccCCCCCCCCeEE
Q 005218 378 GPLTTAIVKAGTLVCGQHVVVGHEWG----RIRAIRDMV--------G--KSTDKARPAMPVEIE--GLKGLPMAGDDII 441 (708)
Q Consensus 378 G~v~~~~V~~G~L~~gd~v~~g~~~~----kVr~i~~~~--------~--~~v~~a~~g~~V~i~--gl~~~~~~Gd~~~ 441 (708)
|+.+.+++.+|.|+.||.|++++..| .||++.... + ...+++.+.+.|.|. +|... .+|..+.
T Consensus 714 GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEka-iaG~~l~ 792 (1064)
T KOG1144|consen 714 GTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKA-IAGTRLL 792 (1064)
T ss_pred CceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHH-hcCCeeE
Confidence 99999999999999999988865544 345443221 1 123445555666665 55544 6999999
Q ss_pred EeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEE
Q 005218 442 VVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVH 521 (708)
Q Consensus 442 ~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~ 521 (708)
+|..+++-..+.+.--. .+.. .+.. ......+|+|.|.++||||||+++|.. ++|+|..
T Consensus 793 VvgpeDd~e~lk~~~m~-----dl~~----~l~~-------Id~sgeGv~vqastlgslealleflk~-----~kIPv~g 851 (1064)
T KOG1144|consen 793 VVGPEDDIEELKEEAME-----DLES----VLSR-------IDKSGEGVYVQASTLGSLEALLEFLKT-----VKIPVSG 851 (1064)
T ss_pred EeCCcccHHHHHHHHHH-----HHHH----HHHH-------hhccCCceEEEecccchHHHHHHHHhh-----cCccccc
Confidence 99655444333221100 1110 0111 135678999999999999999999986 4599999
Q ss_pred ecCCCCCHhhHHhHHhc------CCEEEEeCCCCCchhHHHHHHHcCCeEEEcchhhhhHHHHHHHHhhcCCCceeeeee
Q 005218 522 VGVGSVTQSDVDLAQAC------GACIVGFNVKSPPTSVSQAATQAGIKILMHSIIYHLLDDFGNLVVDKAPGTFETQVA 595 (708)
Q Consensus 522 ~~VG~it~sDv~~A~~~------~a~Il~Fnv~~~~~~~~~~a~~~~V~i~~~~iIY~L~d~~~~~~~~~~~~~~~~~~~ 595 (708)
.|+|||...||+.|+++ .|+||||+|++..++ +.+|.+.||+|++.+|||||||.+..|.++.++. ......
T Consensus 852 i~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA-~e~Ad~~gVkIF~adiIYhLfD~f~~y~e~~ke~-kkke~~ 929 (1064)
T KOG1144|consen 852 IGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREA-RELADEMGVKIFCADIIYHLFDAFTKYIEEIKEE-KKKESA 929 (1064)
T ss_pred ccccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHH-HHHHHhhCceeeehhHHHHHHHHHHHHHHHHHHH-HHhhcc
Confidence 99999999999999997 699999999999998 8999999999999999999999999999988774 334556
Q ss_pred eceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcc-
Q 005218 596 GEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRD- 674 (708)
Q Consensus 596 g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~- 674 (708)
..|.+..++.+-..+.+++++|.|.|+.|..|.++.|+++||.. .+.+.-|+|.||+++++.|..+++|++++|.|++
T Consensus 930 ~~AvFPc~L~ilpn~ifN~RdPiv~GV~V~~GilkiGTPiCv~~-r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~~ 1008 (1064)
T KOG1144|consen 930 DEAVFPCVLQILPNCIFNKRDPIVLGVDVEEGILKIGTPICVPK-REFIDLGRVASIENNHKPVDYAKKGQEVAIKIEAS 1008 (1064)
T ss_pred CceeeeeehhhhhHhhccCCCCeEEEEEeecCeeecCCceEEec-cceeeeeeeeeecccCcccchhhcCCeEEEEEecC
Confidence 67777666666666667778899999999999999999998887 7788899999999999999999999999999987
Q ss_pred --------cCCCCCCCEEE
Q 005218 675 --------WHDFQVGDIIQ 685 (708)
Q Consensus 675 --------~~~~~~gD~ie 685 (708)
.++|...|++-
T Consensus 1009 ~~e~~~mfGRHf~~~D~Ly 1027 (1064)
T KOG1144|consen 1009 NGEEQKMFGRHFDMEDILY 1027 (1064)
T ss_pred CCCCcchhhcccCccchHH
Confidence 37888888763
No 10
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=100.00 E-value=5.8e-50 Score=431.70 Aligned_cols=290 Identities=20% Similarity=0.233 Sum_probs=236.8
Q ss_pred hhcccccccccCCCc-----ccccccCchhhhhccccc-------------CCccccCCCCcchhhhccCcccchhhhhh
Q 005218 9 RSANARVVASKSLKY-----APSSITTSAESSCSCLQG-------------LRYHDVSMKVSLIRCFHASPELLARRRDE 70 (708)
Q Consensus 9 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-------------~~~r~a~~geft~Raf~ngk~dl~~~~~e 70 (708)
.+.| .....+|.++ ||+|||+++.+...||++ +|+|+|+|||||+|||+||||||+ |||
T Consensus 52 ~i~d-~~~~~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~GaR~AepGEFs~RAFLNgK~DLt--qAE 128 (454)
T COG0486 52 HIKD-ENGEIIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKLGARLAEPGEFSKRAFLNGKLDLT--QAE 128 (454)
T ss_pred EEEc-CCCcEeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHcCCeecCCCcchHHHHhcCCccHH--HHH
Confidence 3344 4455566664 799999999999999874 699999999999999999999999 999
Q ss_pred hhhhhhhccccccccccccccCCCCCcccccCCCCCCcccccCCCceeecchhhHHHHHHHHhccCHHHHHHHHHhcccc
Q 005218 71 DSFGLKTARRESNKGKFRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEK 150 (708)
Q Consensus 71 ~~~~li~a~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~la~~l~~~~~~l~~~L~~~~~~ 150 (708)
||+|||+| +|+.|+ ++|+++|.|.++..+..|++.|+.+.+.
T Consensus 129 ai~dLI~A-----------~te~a~---------------------------r~A~~~l~G~ls~~i~~lr~~li~~~a~ 170 (454)
T COG0486 129 AIADLIDA-----------KTEQAA---------------------------RIALRQLQGALSQLINELREALLELLAQ 170 (454)
T ss_pred HHHHHHhC-----------CCHHHH---------------------------HHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999 9999999999999999999999999998
Q ss_pred cccCCCCCChhHHHH----HHHHhC---Ccee-eecCCCCCCCCCCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCc
Q 005218 151 VDSEFEPLSIDVAEL----VVMELG---FNVR-RIHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGG 221 (708)
Q Consensus 151 ~e~~~~~~~~~~~~~----~~~~~~---~~~~-~l~~~~~~~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~g 221 (708)
+|...|++++|..+. +...+. ..+. .+..+..++++++|.+++|+|+||||||||+|+|++++.++ ++.||
T Consensus 171 vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~G 250 (454)
T COG0486 171 VEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAG 250 (454)
T ss_pred heEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCC
Confidence 885555444432222 222221 1121 24677889999999999999999999999999999999887 99999
Q ss_pred eEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhh--------cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEE
Q 005218 222 ITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRK--------RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV 293 (708)
Q Consensus 222 tT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~--------~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piI 293 (708)
||||+....+.+ +|+++.++||||.++.....+ ..+..||++++|+|++.+...++...+. +...++|++
T Consensus 251 TTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i 328 (454)
T COG0486 251 TTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPII 328 (454)
T ss_pred CccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEE
Confidence 999999999999 999999999999886554333 3478999999999999987777777776 455689999
Q ss_pred EEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 294 VAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 294 vViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
+|+||.||......... ......+++.+||++|+|++.|.+.|...+.
T Consensus 329 ~v~NK~DL~~~~~~~~~-----------~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 329 VVLNKADLVSKIELESE-----------KLANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred EEEechhcccccccchh-----------hccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 99999999754321110 1112347899999999999999999988654
No 11
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=100.00 E-value=4e-45 Score=406.88 Aligned_cols=293 Identities=18% Similarity=0.163 Sum_probs=228.4
Q ss_pred hhhhhhhhcccccccccCCCc-----ccccccCchhhhhccccc-------------CCccccCCCCcchhhhccCcccc
Q 005218 3 WRQILKRSANARVVASKSLKY-----APSSITTSAESSCSCLQG-------------LRYHDVSMKVSLIRCFHASPELL 64 (708)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-------------~~~r~a~~geft~Raf~ngk~dl 64 (708)
|+.++.++++| ....+|.++ +|+||||++.+...||++ .|+|+|+|||||+|||+||||||
T Consensus 36 ~~~~~~~~~~~-~~~~iD~~l~~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~g~R~A~pGEFT~RAflNGk~DL 114 (442)
T TIGR00450 36 MRIQYGHIIDS-NNKCKDDELLFKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKSGARLAQPGEFTQRAFLNGKMDL 114 (442)
T ss_pred cEEEEEEEECC-CCCEeeeEEEEEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHcCCeEcCCchhhHHHHhcCCccH
Confidence 44556667777 456778774 699999999999999764 59999999999999999999999
Q ss_pred hhhhhhhhhhhhhccccccccccccccCCCCCcccccCCCCCCcccccCCCceeecchhhHHHHHHHHhccCHHHHHHHH
Q 005218 65 ARRRDEDSFGLKTARRESNKGKFRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDIL 144 (708)
Q Consensus 65 ~~~~~e~~~~li~a~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~la~~l~~~~~~l~~~L 144 (708)
+ |||||+|||+| +|+.|+ ++|+.+|+|.++..+..|++.|
T Consensus 115 ~--qaEav~dlI~a-----------~t~~~~---------------------------~~A~~~l~G~ls~~~~~~r~~l 154 (442)
T TIGR00450 115 T--QAEAINELILA-----------PNNKVK---------------------------DIALNKLAGELDQKIEAIRKSL 154 (442)
T ss_pred H--HHHHHHHHHhC-----------CCHHHH---------------------------HHHHHhcCcHHHHHHHHHHHHH
Confidence 9 99999999999 999999 9999999999999999999999
Q ss_pred HhcccccccCCCCCChhHH-HHHHHHhC---Ccee-eecCCCCCCCCCCCCEEEEEecCCCCchHHHHHhhcCccc-ccc
Q 005218 145 VNVGEKVDSEFEPLSIDVA-ELVVMELG---FNVR-RIHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKE 218 (708)
Q Consensus 145 ~~~~~~~e~~~~~~~~~~~-~~~~~~~~---~~~~-~l~~~~~~~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~ 218 (708)
+.+.+.+|...|+.+++.. ..+...+. ..+. .+.+. .++.++.+++|+++|+||+|||||+|+|++...+ .++
T Consensus 155 ~~~~a~iea~iDf~ee~~~~~~~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~ 233 (442)
T TIGR00450 155 LQLLAQVEVNIDYEEDDDEQDSLNQLLLSIIAELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSD 233 (442)
T ss_pred HHHHHHeeEECCcCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCC
Confidence 9999998865555444321 11111111 1111 12333 4477889999999999999999999999988764 478
Q ss_pred cCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh--------hhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCC
Q 005218 219 AGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM--------RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANV 290 (708)
Q Consensus 219 ~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~--------~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~ 290 (708)
.+|+|+|+....+.+ +|.++.+|||||++++... ...+++.+|++++|+|++++...+.. .+..+...++
T Consensus 234 ~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~ 311 (442)
T TIGR00450 234 IKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKK 311 (442)
T ss_pred CCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCC
Confidence 899999998888888 8999999999998665432 23467899999999999987665544 4555555689
Q ss_pred CEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 291 PIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 291 piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
|+|+|+||+|+...+. ..+. ..+ ..+++++||++ .|++++++.|.....
T Consensus 312 piIlV~NK~Dl~~~~~----~~~~------~~~--~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 312 PFILVLNKIDLKINSL----EFFV------SSK--VLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred CEEEEEECccCCCcch----hhhh------hhc--CCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 9999999999964311 1111 111 24689999998 699999998877543
No 12
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=100.00 E-value=3.6e-45 Score=409.27 Aligned_cols=290 Identities=20% Similarity=0.220 Sum_probs=228.6
Q ss_pred hhhhhhhhcccccccccCCCc-----ccccccCchhhhhccccc-------------CCccccCCCCcchhhhccCcccc
Q 005218 3 WRQILKRSANARVVASKSLKY-----APSSITTSAESSCSCLQG-------------LRYHDVSMKVSLIRCFHASPELL 64 (708)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-------------~~~r~a~~geft~Raf~ngk~dl 64 (708)
|+.++.+.+++ ...+|.++ +|+||||++.+...|+++ .|+|+|+|||||+|||+||||||
T Consensus 45 ~~~~~~~~~~~--~~~iD~~l~~~f~~P~S~TGEd~vEi~~HG~~~v~~~il~~l~~~g~r~A~pGEFt~RAflngk~dL 122 (449)
T PRK05291 45 RTAHYGHIRDP--GEVIDEVLVLYFPAPNSFTGEDVVEIQCHGGPAVLNLILELLLALGARLAEPGEFTKRAFLNGKLDL 122 (449)
T ss_pred cEEEEEEEecC--CcccceEEEEEecCCCCccCCcEEEEECCCCHHHHHHHHHHHHHcCCEEccCccchHHHHhcCCcCH
Confidence 45556666775 56678775 799999999999999764 59999999999999999999999
Q ss_pred hhhhhhhhhhhhhccccccccccccccCCCCCcccccCCCCCCcccccCCCceeecchhhHHHHHHHHhccCHHHHHHHH
Q 005218 65 ARRRDEDSFGLKTARRESNKGKFRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDIL 144 (708)
Q Consensus 65 ~~~~~e~~~~li~a~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~la~~l~~~~~~l~~~L 144 (708)
+ |||+|+|||+| +|+.|+ ++|+.+|.|.+++.+..|++.|
T Consensus 123 ~--qaEai~~li~a-----------~t~~~~---------------------------~~al~~l~G~l~~~~~~~r~~l 162 (449)
T PRK05291 123 T--QAEAIADLIDA-----------KTEAAA---------------------------RLALRQLQGALSKLINELREEL 162 (449)
T ss_pred H--HHHHHHHHHhC-----------CCHHHH---------------------------HHHHHhcCcHHHHHHHHHHHHH
Confidence 9 99999999999 999999 9999999999999999999999
Q ss_pred HhcccccccCCCCCChhHHH----HHHHH---hCCceee-ecCCCCCCCCCCCCEEEEEecCCCCchHHHHHhhcCccc-
Q 005218 145 VNVGEKVDSEFEPLSIDVAE----LVVME---LGFNVRR-IHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLV- 215 (708)
Q Consensus 145 ~~~~~~~e~~~~~~~~~~~~----~~~~~---~~~~~~~-l~~~~~~~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~- 215 (708)
+.+.+.+|...|+.+++..+ .+... +...+.. +.....++.++++++|+++|+||+|||||+|+|++.+..
T Consensus 163 ~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~ 242 (449)
T PRK05291 163 LELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAI 242 (449)
T ss_pred HHHHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcc
Confidence 99988887554444433211 11111 1111221 123344566778899999999999999999999988764
Q ss_pred ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh--------hhcccccccEEEEEEEccCCCChhHHHHHHHhhh
Q 005218 216 AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM--------RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANA 287 (708)
Q Consensus 216 ~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~--------~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~ 287 (708)
.++.+|+|+|+....+.+ +|.++.+|||||++++... ....+..+|++++|+|++++...+....|.. .
T Consensus 243 v~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~ 319 (449)
T PRK05291 243 VTDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--L 319 (449)
T ss_pred cCCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--c
Confidence 478899999998888888 8899999999998765432 2235789999999999998776666555554 4
Q ss_pred cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 288 ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 288 ~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
.++|+++|+||+|+.+..... .....+++++||++|.|+++|+++|....
T Consensus 320 ~~~piiiV~NK~DL~~~~~~~--------------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 320 KDKPVIVVLNKADLTGEIDLE--------------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred CCCCcEEEEEhhhccccchhh--------------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 578999999999996422111 01124789999999999999999998764
No 13
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-35 Score=314.08 Aligned_cols=289 Identities=21% Similarity=0.199 Sum_probs=208.3
Q ss_pred ccccccCchhhhhcccc----------------cCCccccCCCCcchhhhccCcccchhhhhhhhhhhhhcccccccccc
Q 005218 24 APSSITTSAESSCSCLQ----------------GLRYHDVSMKVSLIRCFHASPELLARRRDEDSFGLKTARRESNKGKF 87 (708)
Q Consensus 24 ~~~~~~~~~~~~~~~~~----------------~~~~r~a~~geft~Raf~ngk~dl~~~~~e~~~~li~a~~~~~~~~~ 87 (708)
+|.|||+++...-.|+. ..|+|+|+|||||+|||+|||+||+ |+|++.+||+|
T Consensus 118 gp~sFtgeD~~el~~hgs~avv~~~l~a~~~sg~~~ir~a~~geft~Raf~ngk~~Lt--q~eg~~~lI~a--------- 186 (531)
T KOG1191|consen 118 GPQSFTGEDVVELQTHGSSAVVVGVLTALGASGIPGIRLAEPGEFTRRAFLNGKLDLT--QAEGIIDLIVA--------- 186 (531)
T ss_pred CCceeeeeeeEEEEEecCccchhhHHHHhhhccCCCccccCchhhhhhhhhccccchh--hhcChhhhhhh---------
Confidence 56667766665555433 3479999999999999999999999 99999999999
Q ss_pred ccccCCCCCcccccCCCCCCcccccCCCceeecchhhHHHHHHHHhccCHHHHHHHHHhcccccccCCCCCChhHH---H
Q 005218 88 RKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVA---E 164 (708)
Q Consensus 88 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~la~~l~~~~~~l~~~L~~~~~~~e~~~~~~~~~~~---~ 164 (708)
+|+.|+ ..|+.++.|........|++.++...+.++...++.++... +
T Consensus 187 --~t~~q~---------------------------~~Al~~v~g~~~~l~~~~r~~lIe~~a~l~a~idf~e~~~l~~~~ 237 (531)
T KOG1191|consen 187 --ETESQR---------------------------RAALDEVAGEALALCFGWRKILIEALAGLEARIDFEEERPLEEIE 237 (531)
T ss_pred --hhHhhh---------------------------hhhhhhhcchhHHhhhhHHHHHHHHHhccceeechhhcCchhhcc
Confidence 999999 89999999988666666888877766665533322111110 0
Q ss_pred ---HHH--HHhCCce-eeecCCCCCCCCCCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCe
Q 005218 165 ---LVV--MELGFNV-RRIHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGA 237 (708)
Q Consensus 165 ---~~~--~~~~~~~-~~l~~~~~~~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~ 237 (708)
... +.+...+ ..+...+..+.++.++.|+|+|+||+|||||+|+|.++++.+ ++.+|||||.....+.. +|+
T Consensus 238 t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-~G~ 316 (531)
T KOG1191|consen 238 TVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-NGV 316 (531)
T ss_pred chhhhhHHHHHHHHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-CCe
Confidence 000 0011111 123555667788999999999999999999999999999876 99999999999999998 999
Q ss_pred eEEEeeCCCcch--------hhhhhh-cccccccEEEEEEEccCCCChhHHHHHHHhhh------------cCCCEEEEE
Q 005218 238 SITFLDTPGHAA--------FSAMRK-RGAAVTDIVVLVVAADDGVMPQTLEAIAHANA------------ANVPIVVAI 296 (708)
Q Consensus 238 ~v~liDTpG~~~--------f~~~~~-~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~------------~~~piIvVi 296 (708)
++.|.||||.++ ...++. ..+..||++++|+|+..+.+.++......+.. ...|+|++.
T Consensus 317 ~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~ 396 (531)
T KOG1191|consen 317 PVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVA 396 (531)
T ss_pred EEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEe
Confidence 999999999876 122222 45789999999999977777777665555432 236789999
Q ss_pred eCCCCCCCCcchhhhhhhhcccchhccCCcce-EEEEeeecCCCchhHHHHHHHHHHHccc
Q 005218 297 NKCDKPAADPERVKNQLGAEGLELEDWGGKVQ-VVEVSAVKKTGLDDLEVALLLQAEMMNL 356 (708)
Q Consensus 297 NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~-vi~vSAktg~GI~~L~~~I~~~~~~~~~ 356 (708)
||+|+...-++ .......+ .-....+..+ +.++||+|++|++.|.++|......+..
T Consensus 397 nk~D~~s~~~~-~~~~~~~~--~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 397 NKSDLVSKIPE-MTKIPVVY--PSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred chhhccCcccc-ccCCceec--cccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 99999643111 11100000 0001112234 5569999999999999999987765543
No 14
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.97 E-value=2e-29 Score=289.77 Aligned_cols=338 Identities=25% Similarity=0.307 Sum_probs=247.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCccc----------------ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLV----------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM 253 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~----------------~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~ 253 (708)
.+|+|+||+|||||||+++|+..... .....|+|.......+.+ +++.++|||||||.+|...
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFGGE 80 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHHHH
Confidence 58999999999999999999863221 122468888887778888 8999999999999999999
Q ss_pred hhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccch--hccCCcceEEE
Q 005218 254 RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLEL--EDWGGKVQVVE 331 (708)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~--~~~~~~~~vi~ 331 (708)
+.++++.+|++++|+|+.+|..+|+..+|..+...++|+|+|+||+|+.+.+...+..++......+ ......+|+++
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~ 160 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVY 160 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEe
Confidence 9999999999999999999999999999999999999999999999997655544444333221100 00112468999
Q ss_pred EeeecCC----------CchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc
Q 005218 332 VSAVKKT----------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE 401 (708)
Q Consensus 332 vSAktg~----------GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~ 401 (708)
+||++|. |++.|++.|..... .+..+++.|+.++|++++.+++.|.++.++|.+|+|++||.|++.+.
T Consensus 161 ~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP--~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~ 238 (594)
T TIGR01394 161 ASGRAGWASLDLDDPSDNMAPLFDAIVRHVP--APKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR 238 (594)
T ss_pred chhhcCcccccCcccccCHHHHHHHHHHhCC--CCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC
Confidence 9999996 78999998887542 23345678999999999999999999999999999999999999875
Q ss_pred c-----ceEEEEeccc---CCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhh
Q 005218 402 W-----GRIRAIRDMV---GKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERT 473 (708)
Q Consensus 402 ~-----~kVr~i~~~~---~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 473 (708)
. .+|++|+... ..++++|.||+.|.|.|++++ ..||++....+.. .+
T Consensus 239 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i-~~Gdtl~~~~~~~------------------------~l 293 (594)
T TIGR01394 239 DGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI-NIGETIADPEVPE------------------------AL 293 (594)
T ss_pred CCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc-CCCCEEeCCCccc------------------------cC
Confidence 2 4688887553 468999999999999999886 7899997543311 00
Q ss_pred hccCCCCCCCCCccccEEEEeccc---ccH------HHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEE
Q 005218 474 ENLEPSEDVPKRAEMPVIVKADVQ---GTV------QAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVG 544 (708)
Q Consensus 474 ~~~~~~~~~~~~~~~~~iiKad~~---Gsl------EAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~ 544 (708)
... ....+.+.+.+.+... |.- ..|.+.|.++..+++.+.|-...- ++..+++
T Consensus 294 ~~~-----~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~-------------~~~~~v~ 355 (594)
T TIGR01394 294 PTI-----TVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTES-------------ADKFEVS 355 (594)
T ss_pred CCC-----CCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecC-------------CCeEEEE
Confidence 000 0123566667765433 432 348888888877777777755421 1345555
Q ss_pred eCCCCCchh-HHHHHHHcCCeEE--Ecchhhhh
Q 005218 545 FNVKSPPTS-VSQAATQAGIKIL--MHSIIYHL 574 (708)
Q Consensus 545 Fnv~~~~~~-~~~~a~~~~V~i~--~~~iIY~L 574 (708)
+-=...-++ ++++.+ .|+.+. .-.|+|+-
T Consensus 356 g~GelHL~il~e~lrr-eg~e~~~~~P~V~yre 387 (594)
T TIGR01394 356 GRGELHLSILIETMRR-EGFELQVGRPQVIYKE 387 (594)
T ss_pred EECHHHHHHHHHHHhc-cCceEEEeCCEEEEEe
Confidence 433333333 233333 355544 45688874
No 15
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=2.9e-29 Score=288.84 Aligned_cols=235 Identities=26% Similarity=0.377 Sum_probs=193.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCc---ccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~---~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.+|+++||+|||||||+++|++.. +.....+|+|.++....+.+ ++..+.|||||||+.|...+..++..+|++++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEKFISNAIAGGGGIDAALL 79 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 479999999999999999999743 33455689999998888887 66999999999999999999999999999999
Q ss_pred EEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 267 VVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
|+|+++++++|+.+++..+...++| +|+|+||+|+.+... +...+++...... ..+....+++++||++|.|+++++
T Consensus 80 VVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~-~~~~~~~~ii~vSA~tG~GI~eL~ 158 (581)
T TIGR00475 80 VVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNS-YIFLKNAKIFKTSAKTGQGIGELK 158 (581)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHH-hCCCCCCcEEEEeCCCCCCchhHH
Confidence 9999999999999999888888999 999999999964221 0111222211000 011124689999999999999999
Q ss_pred HHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCC
Q 005218 345 VALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPA 422 (708)
Q Consensus 345 ~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g 422 (708)
+.|....+..... ..+.|+..+|.+++..++.|++++|.+.+|++++||.|.++|. ..+|++|+ .+++.+++|.||
T Consensus 159 ~~L~~l~~~~~~~-~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq-~~~~~v~~a~aG 236 (581)
T TIGR00475 159 KELKNLLESLDIK-RIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQ-AQNQDVEIAYAG 236 (581)
T ss_pred HHHHHHHHhCCCc-CcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEE-ECCccCCEEECC
Confidence 9998877655433 2467999999999999999999999999999999999999974 46899998 468899999999
Q ss_pred CcEEEe
Q 005218 423 MPVEIE 428 (708)
Q Consensus 423 ~~V~i~ 428 (708)
+.|.|.
T Consensus 237 ~rval~ 242 (581)
T TIGR00475 237 QRIALN 242 (581)
T ss_pred CEEEEE
Confidence 999874
No 16
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.96 E-value=4.9e-29 Score=278.59 Aligned_cols=233 Identities=29% Similarity=0.377 Sum_probs=184.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-------------------------------cccCceEEeeeEEEEEecCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-------------------------------KEAGGITQHMGAFVVGMSTG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-------------------------------~~~~gtT~di~~~~v~~~~g 236 (708)
..++|+++||+|+|||||+++|+.....+ ...+|+|+|.....+.+ ++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CC
Confidence 45789999999999999999998543221 12589999999988887 88
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccC--CCChhHHHHHHHhhhcCC-CEEEEEeCCCCCCCCcchh---h
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD--GVMPQTLEAIAHANAANV-PIVVAINKCDKPAADPERV---K 310 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~--g~~~q~~~~l~~l~~~~~-piIvViNK~Dl~~~~~~~~---~ 310 (708)
+.++|||||||++|...+..++..+|++++|+|+++ +...++.+++..+...+. |+++++||+|+.+.+.+.+ .
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999998877778899999999999999 888999998888877776 5899999999975333222 1
Q ss_pred hhhhhcccchhccC---CcceEEEEeeecCCCchh------------HHHHHHHHHHHcccccccCCCcceeEEEEEeeC
Q 005218 311 NQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEARLDK 375 (708)
Q Consensus 311 ~~l~~~~~~~~~~~---~~~~vi~vSAktg~GI~~------------L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~ 375 (708)
+++... +..++ ..++++++||++|.|+++ |+++|.. ...+..+.+.|+..+|.+++..+
T Consensus 164 ~~i~~~---l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~---~~~~~~~~~~p~r~~i~~~~~~~ 237 (425)
T PRK12317 164 EEVSKL---LKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN---LKPPEKPTDKPLRIPIQDVYSIS 237 (425)
T ss_pred HHHHHH---HHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc---CCCCccccCCCcEEEEEEEEeeC
Confidence 222211 11111 136899999999999987 4444432 12222335679999999999999
Q ss_pred CCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEe
Q 005218 376 GRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 376 ~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
+.|++++|+|.+|++++||.|.++|. ..+|++|+. ++.+++.|.||+.|.+.
T Consensus 238 g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~-~~~~~~~a~aG~~v~i~ 291 (425)
T PRK12317 238 GVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEM-HHEELPQAEPGDNIGFN 291 (425)
T ss_pred CCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEE-CCcccCEECCCCeEEEE
Confidence 99999999999999999999999874 468999985 57789999999999873
No 17
>PRK10218 GTP-binding protein; Provisional
Probab=99.96 E-value=1.6e-28 Score=281.95 Aligned_cols=254 Identities=29% Similarity=0.329 Sum_probs=204.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc----------------cccCceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA----------------KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~----------------~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
.+..+|+|+||+|||||||+++|+...... ....|+|.......+.+ +++.++|||||||.+|
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df 81 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADF 81 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchh
Confidence 356789999999999999999998632211 12468888877777777 8899999999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccch--hccCCcce
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLEL--EDWGGKVQ 328 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~--~~~~~~~~ 328 (708)
...+..+++.+|++++|+|+.++...++..++..+...++|.|+++||+|+.+++.+....++.+....+ ......+|
T Consensus 82 ~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P 161 (607)
T PRK10218 82 GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP 161 (607)
T ss_pred HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence 9999999999999999999999999999999999888999999999999998776665555444331111 11123578
Q ss_pred EEEEeeecCC----------CchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEE
Q 005218 329 VVEVSAVKKT----------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVV 398 (708)
Q Consensus 329 vi~vSAktg~----------GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~ 398 (708)
++++||++|. |+..|++.|..... .+..+++.|+.++|++++.+++.|.++.++|.+|+|++||.|++
T Consensus 162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP--~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~ 239 (607)
T PRK10218 162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP--APDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTI 239 (607)
T ss_pred EEEeEhhcCcccCCccccccchHHHHHHHHHhCC--CCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEE
Confidence 9999999998 57788888776542 23334678999999999999999999999999999999999988
Q ss_pred ccc-----cceEEEEecc---cCCcccccCCCCcEEEeccCCCCCCCCeEEEeC
Q 005218 399 GHE-----WGRIRAIRDM---VGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVD 444 (708)
Q Consensus 399 g~~-----~~kVr~i~~~---~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~ 444 (708)
.+. ..+|.+|... ....+++|.||+.|.+.|++++ .+||++....
T Consensus 240 ~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GdTl~~~~ 292 (607)
T PRK10218 240 IDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL-NISDTVCDTQ 292 (607)
T ss_pred ecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc-ccCcEEecCC
Confidence 654 2456666533 4568899999999999999986 7999986543
No 18
>PRK12736 elongation factor Tu; Reviewed
Probab=99.96 E-value=1.5e-28 Score=271.70 Aligned_cols=252 Identities=28% Similarity=0.306 Sum_probs=192.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcc----------------cccccCceEEeeeEEEEEecCCeeEEEeeCCCcch
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~----------------~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~ 249 (708)
.+..++|+++||+|+|||||+++|++... .....+|+|.+.....+.. ++..++|+|||||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence 34568999999999999999999976211 1123579999987776665 778999999999999
Q ss_pred hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCc--chhhhhhhhcccchhccCCc
Q 005218 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGK 326 (708)
Q Consensus 250 f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~ 326 (708)
|...+..++..+|++++|+|+++|+.+++.+++..+...++| +|+++||+|+.+... +.+.+++.............
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 167 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDD 167 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 998888889999999999999999999999999999999999 678999999963211 11111222211000000124
Q ss_pred ceEEEEeeecCC--------CchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEE
Q 005218 327 VQVVEVSAVKKT--------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVV 398 (708)
Q Consensus 327 ~~vi~vSAktg~--------GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~ 398 (708)
+|++++||++|. ++++|++.|..... .+..+.+.|+..+|.+++..++.|++++|+|.+|++++||.|++
T Consensus 168 ~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp--~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i 245 (394)
T PRK12736 168 IPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP--TPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEI 245 (394)
T ss_pred ccEEEeeccccccCCCcchhhHHHHHHHHHHhCC--CCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEE
Confidence 799999999983 56777777766432 22334568999999999999999999999999999999999998
Q ss_pred ccc----cceEEEEecccCCcccccCCCCcEEE--eccC--CCCCCCCeEEE
Q 005218 399 GHE----WGRIRAIRDMVGKSTDKARPAMPVEI--EGLK--GLPMAGDDIIV 442 (708)
Q Consensus 399 g~~----~~kVr~i~~~~~~~v~~a~~g~~V~i--~gl~--~~~~~Gd~~~~ 442 (708)
.+. ..+|++|+. +++++++|.||+.|.+ .|++ ++ ..|+.+..
T Consensus 246 ~p~~~~~~~~V~sI~~-~~~~~~~a~aGd~v~l~l~~i~~~~i-~~G~vl~~ 295 (394)
T PRK12736 246 VGIKETQKTVVTGVEM-FRKLLDEGQAGDNVGVLLRGVDRDEV-ERGQVLAK 295 (394)
T ss_pred ecCCCCeEEEEEEEEE-CCEEccEECCCCEEEEEECCCcHHhC-CcceEEec
Confidence 653 357999984 6789999999999866 4543 22 46776653
No 19
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3e-28 Score=258.81 Aligned_cols=252 Identities=27% Similarity=0.314 Sum_probs=201.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-------------------------------ccccCceEEeeeEEEEEecCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-------------------------------AKEAGGITQHMGAFVVGMSTG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-------------------------------~~~~~gtT~di~~~~v~~~~g 236 (708)
.-.+++++||+++|||||+.+|+.+-.. .....|.|.++....+.. +.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k 84 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DK 84 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CC
Confidence 4578999999999999999999653211 122469999999998888 88
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC-------CChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcch
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-------VMPQTLEAIAHANAANVP-IVVAINKCDKPAADPER 308 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g-------~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~ 308 (708)
+.++++|+|||++|...+..++.+||++|||+|+.++ ...|+.+++-.+...++. +||++||||+++++.++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 8999999999999999999999999999999999997 789999999999988987 99999999999988776
Q ss_pred hhhhhhhcccchhccC---CcceEEEEeeecCCCch------------hHHHHHHHHHHHcccccccCCCcceeEEEEEe
Q 005218 309 VKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLD------------DLEVALLLQAEMMNLKARVDGPAQAYVVEARL 373 (708)
Q Consensus 309 ~~~~l~~~~~~~~~~~---~~~~vi~vSAktg~GI~------------~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~ 373 (708)
+.+...+.......++ .+++|+||||.+|+|+. .|+++|.. . ..+..+.+.|+...|.+++.
T Consensus 165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~-~--~~p~~~~d~Plr~pI~~v~~ 241 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQ-L--EPPERPLDKPLRLPIQDVYS 241 (428)
T ss_pred HHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHhc-c--CCCCCCCCCCeEeEeeeEEE
Confidence 6544333322222222 24789999999999983 56666652 2 22223368899999999999
Q ss_pred eCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEe--ccCC--CCCCCCeEEEeCC
Q 005218 374 DKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIE--GLKG--LPMAGDDIIVVDS 445 (708)
Q Consensus 374 ~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~~--~~~~Gd~~~~v~~ 445 (708)
..+.|++..|+|.+|.|++|+.|++.|. .+.|+++... .+++..+.||+.|.+. |+.. + ..||.+.-..+
T Consensus 242 i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~-~~~~~~a~~GD~i~~~vrgv~~~dI-~~Gdv~~~~~n 317 (428)
T COG5256 242 ISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH-HEEISQAEPGDNVGFNVRGVEKNDI-RRGDVIGHSDN 317 (428)
T ss_pred ecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec-ccccccCCCCCeEEEEecCCchhcc-CCccEeccCCC
Confidence 8899999999999999999999999885 4679999854 8899999999998753 4322 3 57776654443
No 20
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.96 E-value=2.8e-28 Score=281.56 Aligned_cols=246 Identities=28% Similarity=0.409 Sum_probs=195.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCc---ccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~---~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
..|+++||+|||||||+++|++.+ .......|+|.+.....+...++..+.|||||||++|...+..++..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 368999999999999999998743 33345579999988777766567889999999999999888889999999999
Q ss_pred EEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCC-cchhhhhhhhcccchhccC-CcceEEEEeeecCCCchhH
Q 005218 267 VVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAAD-PERVKNQLGAEGLELEDWG-GKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~-~~~~vi~vSAktg~GI~~L 343 (708)
|+|+++++.+|+.+++..+...++| +|+|+||+|+.+.. .+....++... +...+ ...+++++||++|.|+++|
T Consensus 81 VVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~---l~~~~~~~~~ii~VSA~tG~gI~~L 157 (614)
T PRK10512 81 VVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAV---LREYGFAEAKLFVTAATEGRGIDAL 157 (614)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHH---HHhcCCCCCcEEEEeCCCCCCCHHH
Confidence 9999999999999999988888888 57999999996421 11122222211 11111 2468999999999999999
Q ss_pred HHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCC
Q 005218 344 EVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARP 421 (708)
Q Consensus 344 ~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~ 421 (708)
++.|..... +..+.+.|+..+|.+++..+|.|++++|++.+|++++||.|.+.+. ..+|++|+. ++.++.+|.|
T Consensus 158 ~~~L~~~~~---~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~-~~~~v~~a~a 233 (614)
T PRK10512 158 REHLLQLPE---REHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHA-QNQPTEQAQA 233 (614)
T ss_pred HHHHHHhhc---cccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEec-CCcCCCEEeC
Confidence 999987532 2223567999999999999999999999999999999999999764 458999984 5789999999
Q ss_pred CCcEEEe--c-cC--CCCCCCCeEEEe
Q 005218 422 AMPVEIE--G-LK--GLPMAGDDIIVV 443 (708)
Q Consensus 422 g~~V~i~--g-l~--~~~~~Gd~~~~v 443 (708)
|+.|.+. | +. ++ ..||.+...
T Consensus 234 G~rval~l~g~~~~~~i-~rGdvl~~~ 259 (614)
T PRK10512 234 GQRIALNIAGDAEKEQI-NRGDWLLAD 259 (614)
T ss_pred CCeEEEEecCCCChhhC-CCcCEEeCC
Confidence 9998774 3 32 22 578877644
No 21
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.96 E-value=1.1e-27 Score=275.96 Aligned_cols=298 Identities=23% Similarity=0.289 Sum_probs=223.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccc---------------cccCceEEeeeEEEEEec----CCeeEEEeeCCCcch
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVA---------------KEAGGITQHMGAFVVGMS----TGASITFLDTPGHAA 249 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~---------------~~~~gtT~di~~~~v~~~----~g~~v~liDTpG~~~ 249 (708)
..+|+|+||+|||||||+++|+.....+ ....|+|.+.....+.+. ..+.++|||||||.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999998643211 123578877665555442 237899999999999
Q ss_pred hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceE
Q 005218 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQV 329 (708)
Q Consensus 250 f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 329 (708)
|...+.++++.||++|+|+|++++...++...|..+...++|+|+|+||+|+.+.+.+...+++.+.. . + ...++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~l-g---~-~~~~v 157 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVI-G---L-DASEA 157 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHh-C---C-CcceE
Confidence 99999999999999999999999999999988887777899999999999997544433333332210 0 0 11258
Q ss_pred EEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcccc--ceEEE
Q 005218 330 VEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW--GRIRA 407 (708)
Q Consensus 330 i~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~--~kVr~ 407 (708)
+++||++|.|+++|+++|...+ +.+..+++.|+.++|++++.+++.|.++.++|.+|+|++||.|.+.+.. .+|..
T Consensus 158 i~vSAktG~GI~~Lle~I~~~l--p~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~ 235 (595)
T TIGR01393 158 ILASAKTGIGIEEILEAIVKRV--PPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDE 235 (595)
T ss_pred EEeeccCCCCHHHHHHHHHHhC--CCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeE
Confidence 9999999999999999998754 3344456789999999999999999999999999999999999987643 35767
Q ss_pred Eeccc--CCcccccCCCCcEEEe-ccCCC--CCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCCC
Q 005218 408 IRDMV--GKSTDKARPAMPVEIE-GLKGL--PMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDV 482 (708)
Q Consensus 408 i~~~~--~~~v~~a~~g~~V~i~-gl~~~--~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (708)
+.... ..+++++.||+.+.+. |++++ -.+||++....+... . .+... .
T Consensus 236 i~~~~~~~~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~-~---------------------~l~~~-----~ 288 (595)
T TIGR01393 236 VGVFTPKLTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAK-E---------------------PLPGF-----K 288 (595)
T ss_pred EEEecCCceECCEEcCCCEEEEeccccccCccCCCCEEECCCCccc-c---------------------CCCCC-----c
Confidence 65333 2567899999977765 55432 258999975433100 0 00000 0
Q ss_pred CCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEE
Q 005218 483 PKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVV 520 (708)
Q Consensus 483 ~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv 520 (708)
...+.+..-|.+...+..+.|.++|.++.-++..+.+-
T Consensus 289 ~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~ 326 (595)
T TIGR01393 289 EVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYE 326 (595)
T ss_pred CCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEE
Confidence 12345666788889999999999999998888777764
No 22
>PRK12735 elongation factor Tu; Reviewed
Probab=99.96 E-value=5e-28 Score=267.63 Aligned_cols=251 Identities=27% Similarity=0.325 Sum_probs=191.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC-------cc---------cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT-------SL---------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~-------~~---------~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
+..++|+++||+|||||||+++|++. .. .....+|+|.+.....+.. ++..++|+|||||++|
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHADY 88 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHHH
Confidence 45578999999999999999999862 11 1123579999987777665 7789999999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEE-EEEeCCCCCCCCc--chhhhhhhhcccchhccCCcc
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKV 327 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piI-vViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~ 327 (708)
...+..++..+|++++|+|+.++...|+.+++..+...++|.+ +++||+|+.+... +.+..++..........+.++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~ 168 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDT 168 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCce
Confidence 8888889999999999999999999999999999988899965 6899999964211 111112221111110011247
Q ss_pred eEEEEeeecCC----------CchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEE
Q 005218 328 QVVEVSAVKKT----------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVV 397 (708)
Q Consensus 328 ~vi~vSAktg~----------GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~ 397 (708)
+++++||++|. ++.+|++.|..... .+....+.|+..+|.+++..++.|++++|+|.+|++++||.|+
T Consensus 169 ~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~--~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~ 246 (396)
T PRK12735 169 PIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP--EPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVE 246 (396)
T ss_pred eEEecchhccccCCCCCcccccHHHHHHHHHhcCC--CCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEE
Confidence 99999999995 56778877776432 2233456799999999999999999999999999999999999
Q ss_pred Eccc----cceEEEEecccCCcccccCCCCcEEEe--ccC--CCCCCCCeEEE
Q 005218 398 VGHE----WGRIRAIRDMVGKSTDKARPAMPVEIE--GLK--GLPMAGDDIIV 442 (708)
Q Consensus 398 ~g~~----~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~--~~~~~Gd~~~~ 442 (708)
+.+. ..+|++|+ .+++++++|.||+.|.+. |++ ++ ..|+.+.-
T Consensus 247 i~p~~~~~~~~VksI~-~~~~~v~~a~aGd~v~l~L~~i~~~~i-~rG~vl~~ 297 (396)
T PRK12735 247 IVGIKETQKTTVTGVE-MFRKLLDEGQAGDNVGVLLRGTKREDV-ERGQVLAK 297 (396)
T ss_pred EecCCCCeEEEEEEEE-ECCeEeCEECCCCEEEEEeCCCcHHHC-CcceEEEc
Confidence 8764 34699998 467899999999998873 442 22 36776553
No 23
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=7.8e-28 Score=268.93 Aligned_cols=233 Identities=27% Similarity=0.368 Sum_probs=182.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccc-------------------------------ccccCceEEeeeEEEEEecC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-------------------------------AKEAGGITQHMGAFVVGMST 235 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~-------------------------------~~~~~gtT~di~~~~v~~~~ 235 (708)
....+|+++||+|+|||||+++|+..... ....+|+|.|.....+.+ +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence 34578999999999999999999752211 112469999999888887 8
Q ss_pred CeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC---CChhHHHHHHHhhhcCC-CEEEEEeCCCCCCCCcchh--
Q 005218 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG---VMPQTLEAIAHANAANV-PIVVAINKCDKPAADPERV-- 309 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g---~~~q~~~~l~~l~~~~~-piIvViNK~Dl~~~~~~~~-- 309 (708)
+..++|||||||++|...+..++..+|++++|+|++++ ...++.+++..+...+. |+|+++||+|+.+.+.+++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 89999999999999988888888999999999999998 67778777766665554 5899999999975443322
Q ss_pred -hhhhhhcccchhccC---CcceEEEEeeecCCCchh------------HHHHHHHHHHHcccccccCCCcceeEEEEEe
Q 005218 310 -KNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEARL 373 (708)
Q Consensus 310 -~~~l~~~~~~~~~~~---~~~~vi~vSAktg~GI~~------------L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~ 373 (708)
..++... +...+ ..++++++||++|.|+++ |+++|.. ...+....+.|+..+|.+++.
T Consensus 164 ~~~ei~~~---~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~---~~~~~~~~~~p~r~~i~~v~~ 237 (426)
T TIGR00483 164 IKKEVSNL---IKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA---LEPPEKPTDKPLRIPIQDVYS 237 (426)
T ss_pred HHHHHHHH---HHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc---CCCCCCccCCCcEEEEEEEEe
Confidence 1222211 11111 246899999999999986 6666543 222233356799999999999
Q ss_pred eCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEE
Q 005218 374 DKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEI 427 (708)
Q Consensus 374 ~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i 427 (708)
.++.|++++|+|.+|.+++||.|+++|. ..+|++|+ .++..+++|.||+.|.+
T Consensus 238 ~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~-~~~~~~~~a~aG~~v~i 292 (426)
T TIGR00483 238 ITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIE-MHHEQIEQAEPGDNIGF 292 (426)
T ss_pred cCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEE-ECCcccCEEcCCCEEEE
Confidence 9999999999999999999999999874 46799998 45778999999999987
No 24
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.4e-28 Score=263.36 Aligned_cols=251 Identities=26% Similarity=0.303 Sum_probs=205.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc---------------cccccCceEEeeeEEEEEec--CCeeEEEeeCCCcch
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL---------------VAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAA 249 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~---------------~~~~~~gtT~di~~~~v~~~--~g~~v~liDTpG~~~ 249 (708)
.+-.+++|+.|++||||||.++|+..-. .....+|+|.......+.+. .++.+++||||||-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3567899999999999999999964222 23356799998777766662 238999999999999
Q ss_pred hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceE
Q 005218 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQV 329 (708)
Q Consensus 250 f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 329 (708)
|+....+.+..||++|||+||..|++.||...+..+.+.+..+|.|+||+|++.++++++..++.+.-... ..++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~-----~~~~ 212 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIP-----PAEV 212 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC-----ccce
Confidence 99999999999999999999999999999999999999999999999999999999999888876542221 2379
Q ss_pred EEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccc----eE
Q 005218 330 VEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWG----RI 405 (708)
Q Consensus 330 i~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~----kV 405 (708)
+.+|||+|.|+++++++|.+. .+.++...+.|+++.+++++++.++|.++.++|..|.++.||.|.+..+.. ++
T Consensus 213 i~vSAK~G~~v~~lL~AII~r--VPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~ 290 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRR--VPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKV 290 (650)
T ss_pred EEEEeccCccHHHHHHHHHhh--CCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEE
Confidence 999999999999999999986 455666788999999999999999999999999999999999998865422 34
Q ss_pred EEEecccCCcccccCCCCcEEEe-ccCCC--CCCCCeEEEeC
Q 005218 406 RAIRDMVGKSTDKARPAMPVEIE-GLKGL--PMAGDDIIVVD 444 (708)
Q Consensus 406 r~i~~~~~~~v~~a~~g~~V~i~-gl~~~--~~~Gd~~~~v~ 444 (708)
-.+...+...+.+..+|+...|. +.+++ +..||++....
T Consensus 291 vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 291 VGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred eEEeccCceeeeeecccccceeEecccccccccccceeeecc
Confidence 44455666667777777776655 33322 36899887655
No 25
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.96 E-value=9.4e-28 Score=268.39 Aligned_cols=236 Identities=25% Similarity=0.265 Sum_probs=186.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc-------------------------------cccccCceEEeeeEEEEEecCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-------------------------------VAKEAGGITQHMGAFVVGMSTG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~-------------------------------~~~~~~gtT~di~~~~v~~~~g 236 (708)
...+|+++||+++|||||+.+|+.... ......|+|.+.....+.+ ++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CC
Confidence 457899999999999999999975211 1123469999998888887 88
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCC-------ChhHHHHHHHhhhcCCC-EEEEEeCCCCC--CCCc
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-------MPQTLEAIAHANAANVP-IVVAINKCDKP--AADP 306 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~-------~~q~~~~l~~l~~~~~p-iIvViNK~Dl~--~~~~ 306 (708)
+.++|+|||||++|...+..++..+|++++|+|+++|+ ..|+.+++..+...++| +|+++||||+. +++.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 99999999999999999999999999999999999987 37999999999999998 67999999953 3333
Q ss_pred chhhhhhhhcccchhccC---CcceEEEEeeecCCCchh------------HHHHHHHHHHHcccccccCCCcceeEEEE
Q 005218 307 ERVKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEA 371 (708)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~---~~~~vi~vSAktg~GI~~------------L~~~I~~~~~~~~~~~~~~~p~~~~V~e~ 371 (708)
+++.....+....+...+ ..+|++++||++|.|+.+ |++.|... ..+..+.+.|+..+|.++
T Consensus 165 ~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~---~~~~~~~~~p~r~~I~~v 241 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL---EPPKRPVDKPLRLPLQDV 241 (446)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC---CCCCcCCCCCeEEEEEEE
Confidence 333222222111111111 257999999999999964 66665432 222334567999999999
Q ss_pred EeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEe
Q 005218 372 RLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 372 ~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
+..++.|++++|+|.+|++++||.|+++|. ..+|++|+. ++.++++|.||+.|.+.
T Consensus 242 ~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~-~~~~~~~a~aG~~v~i~ 299 (446)
T PTZ00141 242 YKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEM-HHEQLAEAVPGDNVGFN 299 (446)
T ss_pred EecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEe-cCcccCEECCCCEEEEE
Confidence 999999999999999999999999999885 357999984 56789999999999873
No 26
>CHL00071 tufA elongation factor Tu
Probab=99.96 E-value=8.7e-28 Score=266.81 Aligned_cols=237 Identities=29% Similarity=0.320 Sum_probs=182.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc----------------cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~----------------~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
...++|+++||+|+|||||+++|++... .....+|+|++.....+.. ++..+.|+|||||.+|
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY 88 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHHH
Confidence 3457899999999999999999986421 1123489999988777766 7889999999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCc--chhhhhhhhcccchhcc-CCc
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADP--ERVKNQLGAEGLELEDW-GGK 326 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~-~~~ 326 (708)
...+.+++..+|++++|+|+..++..|+.+++..+...++| +|+++||+|+.+... +.+..++....... .+ ...
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~-~~~~~~ 167 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKY-DFPGDD 167 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHh-CCCCCc
Confidence 88888899999999999999999999999999999999999 778999999964221 11112222111000 11 124
Q ss_pred ceEEEEeeecCCCc------------------hhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEee
Q 005218 327 VQVVEVSAVKKTGL------------------DDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAG 388 (708)
Q Consensus 327 ~~vi~vSAktg~GI------------------~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G 388 (708)
+|++++||++|.++ ..|+++|.... ..+..+.+.|+..+|.+++..++.|.+++|+|.+|
T Consensus 168 ~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~--~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG 245 (409)
T CHL00071 168 IPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI--PTPERDTDKPFLMAIEDVFSITGRGTVATGRIERG 245 (409)
T ss_pred ceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC--CCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecC
Confidence 79999999999743 44555555432 12223457899999999999999999999999999
Q ss_pred EEcCCCEEEEcc----ccceEEEEecccCCcccccCCCCcEEEe
Q 005218 389 TLVCGQHVVVGH----EWGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 389 ~L~~gd~v~~g~----~~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
++++||.|.+.+ ...+|++|+. +++.+++|.||+.|.+.
T Consensus 246 ~l~~Gd~v~i~p~~~~~~~~VksI~~-~~~~v~~a~aGd~v~i~ 288 (409)
T CHL00071 246 TVKVGDTVEIVGLRETKTTTVTGLEM-FQKTLDEGLAGDNVGIL 288 (409)
T ss_pred EEeeCCEEEEeeCCCCcEEEEEEEEE-cCcCCCEECCCceeEEE
Confidence 999999998643 2357999984 56789999999999764
No 27
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=8.7e-28 Score=265.78 Aligned_cols=252 Identities=28% Similarity=0.353 Sum_probs=185.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc----------------ccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS----------------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~----------------~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
++.++|+++||+|+|||||+++|++.. ......+|+|.+.....+.. ++..++|||||||++|
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY 88 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHHH
Confidence 455789999999999999999997320 01123479999987776665 7788999999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEE-EEEeCCCCCCCCc--chhhhhhhhcccchhccCCcc
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKV 327 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piI-vViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~ 327 (708)
...+..++..+|++++|+|+.+|..+|+.+++..+...++|.+ +++||+|+.+... +.+.+++............++
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDT 168 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCc
Confidence 9888888899999999999999999999999999998899965 6899999964211 111112222111111011247
Q ss_pred eEEEEeeecCC-CchhHHHHHHHHHH----Hc-ccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcc-
Q 005218 328 QVVEVSAVKKT-GLDDLEVALLLQAE----MM-NLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH- 400 (708)
Q Consensus 328 ~vi~vSAktg~-GI~~L~~~I~~~~~----~~-~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~- 400 (708)
|++++||++|. |..++.+.+..+.+ .. .+..+.+.|+..+|.+++..++.|++++|+|.+|++++||.|++.+
T Consensus 169 ~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~ 248 (394)
T TIGR00485 169 PIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGL 248 (394)
T ss_pred cEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecC
Confidence 99999999985 44444332222221 11 2233456799999999999999999999999999999999999865
Q ss_pred ---ccceEEEEecccCCcccccCCCCcEEE--eccC--CCCCCCCeEE
Q 005218 401 ---EWGRIRAIRDMVGKSTDKARPAMPVEI--EGLK--GLPMAGDDII 441 (708)
Q Consensus 401 ---~~~kVr~i~~~~~~~v~~a~~g~~V~i--~gl~--~~~~~Gd~~~ 441 (708)
...+|++|+. ++.++++|.||+.|.+ .+++ ++ ..|+.+.
T Consensus 249 ~~~~~~~VksI~~-~~~~~~~a~aGd~v~l~l~~i~~~~i-~rG~vl~ 294 (394)
T TIGR00485 249 KDTRKTTVTGVEM-FRKELDEGRAGDNVGLLLRGIKREEI-ERGMVLA 294 (394)
T ss_pred CCCcEEEEEEEEE-CCeEEEEECCCCEEEEEeCCccHHHC-CccEEEe
Confidence 2457999984 5788999999999876 3442 22 3566654
No 28
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.96 E-value=2.9e-27 Score=272.73 Aligned_cols=426 Identities=20% Similarity=0.261 Sum_probs=281.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc---------------ccccCceEEeeeEEEEEec----CCeeEEEeeCCCcc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV---------------AKEAGGITQHMGAFVVGMS----TGASITFLDTPGHA 248 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~---------------~~~~~gtT~di~~~~v~~~----~g~~v~liDTpG~~ 248 (708)
+..+|+|+||++||||||+++|+..... .....|+|.......+.+. .++.++|||||||.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 4569999999999999999999763211 1123577776655555442 36889999999999
Q ss_pred hhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcce
Q 005218 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQ 328 (708)
Q Consensus 249 ~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 328 (708)
+|...+.++++.+|++|+|+|+++++..++...|..+...++|+|+|+||+|+...+.+....++.+. +.. ....
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~-lg~----~~~~ 160 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDV-IGI----DASD 160 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHH-hCC----Ccce
Confidence 99999999999999999999999999999999888887789999999999999765444333333221 000 1125
Q ss_pred EEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcccc--ceEE
Q 005218 329 VVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW--GRIR 406 (708)
Q Consensus 329 vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~--~kVr 406 (708)
++++||++|.|+++|+++|...+. .+..+++.|+.++|++++.+++.|.++.++|.+|+|++||.|.+.++. .+|.
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~lp--~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~ 238 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERIP--PPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVD 238 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhCc--cccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEE
Confidence 899999999999999999987643 333456789999999999999999999999999999999999987643 3566
Q ss_pred EEecc--cCCcccccCCCCcEEEe-ccCCC--CCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCC
Q 005218 407 AIRDM--VGKSTDKARPAMPVEIE-GLKGL--PMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSED 481 (708)
Q Consensus 407 ~i~~~--~~~~v~~a~~g~~V~i~-gl~~~--~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (708)
++... +..+++++.||+.+.+. |++++ -.+||++....++.. . .+...
T Consensus 239 ~i~~~~~~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~-~---------------------~l~~~----- 291 (600)
T PRK05433 239 EVGVFTPKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAE-E---------------------PLPGF----- 291 (600)
T ss_pred EeeccCCCceECcEEcCCCEEEEecccccccccCCCCEEECCCCccc-c---------------------CCCCC-----
Confidence 76533 35678999999987775 55432 268999975543200 0 00000
Q ss_pred CCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCC----ch-hHHH
Q 005218 482 VPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSP----PT-SVSQ 556 (708)
Q Consensus 482 ~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~----~~-~~~~ 556 (708)
....+.+..-|.+...+..+.|.++|.++.-++..+.+- + .+..+.+-||-+... -+ ++++
T Consensus 292 ~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-----~---------e~~~~l~~g~r~gf~G~lHlev~~er 357 (600)
T PRK05433 292 KEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE-----P---------ETSQALGFGFRCGFLGLLHMEIIQER 357 (600)
T ss_pred CCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE-----e---------cCCcceecceEeecHHHHHHHHHHHH
Confidence 012345556677888889999999999998877776653 1 111222333333221 12 3345
Q ss_pred HHHHcCCeEEE--cchhhhhH---------HHHHH-----HHhhcCCCceeeeeeeceeEeeEE-----E-eCCCCCCCC
Q 005218 557 AATQAGIKILM--HSIIYHLL---------DDFGN-----LVVDKAPGTFETQVAGEAEVLNIF-----E-LKGRSKAKG 614 (708)
Q Consensus 557 ~a~~~~V~i~~--~~iIY~L~---------d~~~~-----~~~~~~~~~~~~~~~g~a~v~~vf-----~-~~~~~~~~~ 614 (708)
+.++.|+.+.. -+|+|+-. ++-.. .+...++|...-.+ .|..-| . ++.++
T Consensus 358 L~~e~~~~v~~~~P~V~Yreti~~g~~~~~~~p~~~pds~~~~~llEP~~~~~i----~~P~~~~G~vm~~~~~rR---- 429 (600)
T PRK05433 358 LEREFDLDLITTAPSVVYEVTLTDGEVIEVDNPSKLPDPGKIEEIEEPIVKATI----IVPQEYVGAVMELCQEKR---- 429 (600)
T ss_pred HHHhhCceEEEecCEEEEEEEEeCCcEEEEECcccCCCccccceEECCEEEEEE----EecHHHHHHHHHHHHHcC----
Confidence 55555666554 46777752 10000 01122222221111 111111 0 12221
Q ss_pred CCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeee-eccccccceeccCCeEEEEEcccCCCCCCCEEE
Q 005218 615 DDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISL-KREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQ 685 (708)
Q Consensus 615 ~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~sl-k~~k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie 685 (708)
..+.|+.-.++ . -.+.|+-....| ..+-++.+.+.+|. |..=-.|.++++.|.+-
T Consensus 430 --G~~~~~~~~~~------~------~~i~~~~Pl~e~~~~~~~~Lks~T~G~--gs~~~~~~~Y~~~~~~~ 485 (600)
T PRK05433 430 --GVQKDMEYLGN------R------VELTYELPLAEIVFDFFDRLKSVSRGY--ASLDYEFIGYRESDLVK 485 (600)
T ss_pred --CEEeCcEecCC------e------EEEEEEechHHhhhhHHHHhHhhcCCE--EEEEEEECCcccccEEE
Confidence 36666664321 1 124466688888 99999999999998 33333455666666543
No 29
>PRK00049 elongation factor Tu; Reviewed
Probab=99.96 E-value=1.7e-27 Score=263.31 Aligned_cols=251 Identities=27% Similarity=0.327 Sum_probs=190.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc----------------cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~----------------~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
+...+|+++||+|+|||||+++|++... .....+|+|.+.....+.. ++..++|+|||||.+|
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHADY 88 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHHH
Confidence 3457899999999999999999986211 1123579999988777665 7889999999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEE-EEEeCCCCCCCCc--chhhhhhhhcccchhccCCcc
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKV 327 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piI-vViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~ 327 (708)
......++..+|++++|+|+.++..+++.+++..+...++|.+ +++||+|+.+... +.+..++......+.....++
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 168 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDT 168 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 8888889999999999999999999999999999999999975 6899999964211 111122222111110012357
Q ss_pred eEEEEeeecCC----------CchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEE
Q 005218 328 QVVEVSAVKKT----------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVV 397 (708)
Q Consensus 328 ~vi~vSAktg~----------GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~ 397 (708)
|++++||++|. |+..|+++|..... .+....+.|+..+|.+++..++.|++++|+|.+|++++||.++
T Consensus 169 ~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~--~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~ 246 (396)
T PRK00049 169 PIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP--TPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 246 (396)
T ss_pred cEEEeecccccCCCCcccccccHHHHHHHHHhcCC--CCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEE
Confidence 99999999986 45677777766422 2233456899999999999999999999999999999999998
Q ss_pred Ecc----ccceEEEEecccCCcccccCCCCcEEEe--ccC--CCCCCCCeEEE
Q 005218 398 VGH----EWGRIRAIRDMVGKSTDKARPAMPVEIE--GLK--GLPMAGDDIIV 442 (708)
Q Consensus 398 ~g~----~~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~--~~~~~Gd~~~~ 442 (708)
+.+ ...+|++|+ .++..+++|.||+.|.+. +++ ++ ..|+.+.-
T Consensus 247 i~p~~~~~~~~VksI~-~~~~~~~~a~~Gd~v~l~l~~i~~~~i-~~G~vl~~ 297 (396)
T PRK00049 247 IVGIRDTQKTTVTGVE-MFRKLLDEGQAGDNVGALLRGIKREDV-ERGQVLAK 297 (396)
T ss_pred EeecCCCceEEEEEEE-ECCcEeCEEcCCCEEEEEeCCCCHHHC-CcceEEec
Confidence 865 335799998 457889999999998873 332 12 35665543
No 30
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-27 Score=253.40 Aligned_cols=255 Identities=31% Similarity=0.381 Sum_probs=212.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc----------------cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA----------------KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~----------------~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~ 251 (708)
.-.+|+|+.|++||||||++.|+.++... ....|+|.-.....+.+ +++.++++|||||.+|.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCcc
Confidence 34689999999999999999998755321 22469998777777788 99999999999999999
Q ss_pred hhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchh--ccCCcceE
Q 005218 252 AMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELE--DWGGKVQV 329 (708)
Q Consensus 252 ~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~--~~~~~~~v 329 (708)
...++.+.-.|.++|++||.+|.++||+-.++.+...+.+.|||+||+|.+++.++++..+..+....+. ...-++|+
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPi 162 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPI 162 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcE
Confidence 9999999999999999999999999999999999999999999999999999998888776544322221 11236799
Q ss_pred EEEeeecCC----------CchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEc
Q 005218 330 VEVSAVKKT----------GLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVG 399 (708)
Q Consensus 330 i~vSAktg~----------GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g 399 (708)
+..||+.|. ++..||+.|.+.. +.+..+.+.|++..+...-++.+.|.+..|+|.+|++++|+.|.+-
T Consensus 163 vYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv--p~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i 240 (603)
T COG1217 163 VYASARNGTASLDPEDEADDMAPLFETILDHV--PAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALI 240 (603)
T ss_pred EEeeccCceeccCccccccchhHHHHHHHHhC--CCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEE
Confidence 999999984 5788999998874 3445678899999999888999999999999999999999998875
Q ss_pred c-----ccceEEEEecccC---CcccccCCCCcEEEeccCCCCCCCCeEEEeCCH
Q 005218 400 H-----EWGRIRAIRDMVG---KSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSE 446 (708)
Q Consensus 400 ~-----~~~kVr~i~~~~~---~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~ 446 (708)
. ..+||..+....| ..+.+|.+|+.|.|.|+.++ ..||+++-.++.
T Consensus 241 ~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~-~igdTi~d~~~~ 294 (603)
T COG1217 241 KSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI-NIGDTICDPDNP 294 (603)
T ss_pred cCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccc-cccccccCCCCc
Confidence 4 4567887776655 57889999999999999986 567776655443
No 31
>PLN03127 Elongation factor Tu; Provisional
Probab=99.95 E-value=2.2e-27 Score=265.03 Aligned_cols=234 Identities=29% Similarity=0.338 Sum_probs=182.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC------cc----------cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT------SL----------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~------~~----------~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
+..++|+++||+|||||||+++|.+. .. .....+|+|++.....+.. ++.+++|+|||||++|
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHADY 137 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccch
Confidence 45588999999999999999999622 11 1223489999988887776 7889999999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcchhhh----hhhhcccchhcc-C
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKN----QLGAEGLELEDW-G 324 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~~~~----~l~~~~~~~~~~-~ 324 (708)
...+..++..+|++++|+|+.++..+|+.+++..+...++| +|+++||+|+.+. ++..+ ++.+.. ....+ .
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~--~~~~~~i~~~i~~~l-~~~~~~~ 214 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD--EELLELVEMELRELL-SFYKFPG 214 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH--HHHHHHHHHHHHHHH-HHhCCCC
Confidence 88888888899999999999999999999999999999999 5789999999642 22212 221111 11112 2
Q ss_pred CcceEEEEeee---cCCC-------chhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCC
Q 005218 325 GKVQVVEVSAV---KKTG-------LDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQ 394 (708)
Q Consensus 325 ~~~~vi~vSAk---tg~G-------I~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd 394 (708)
..+|++++||+ +|.| +.+|+++|..... .+....+.|+..+|.+++..++.|++++|+|.+|.+++||
T Consensus 215 ~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp--~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd 292 (447)
T PLN03127 215 DEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP--EPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 292 (447)
T ss_pred CcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC--CCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCC
Confidence 35789999876 5555 5677777766432 2233456799999999999999999999999999999999
Q ss_pred EEEEcc------ccceEEEEecccCCcccccCCCCcEEE
Q 005218 395 HVVVGH------EWGRIRAIRDMVGKSTDKARPAMPVEI 427 (708)
Q Consensus 395 ~v~~g~------~~~kVr~i~~~~~~~v~~a~~g~~V~i 427 (708)
.|++.+ ...+|++|+ .+++.+++|.||+.|.+
T Consensus 293 ~v~i~p~~~~g~~~~~VksI~-~~~~~v~~a~aGd~v~l 330 (447)
T PLN03127 293 EVEIVGLRPGGPLKTTVTGVE-MFKKILDQGQAGDNVGL 330 (447)
T ss_pred EEEEcccCCCCcEEEEEEEEE-EECcEeCEEcCCCEEEE
Confidence 998763 245899998 45778999999999987
No 32
>PLN03126 Elongation factor Tu; Provisional
Probab=99.95 E-value=4.1e-27 Score=264.26 Aligned_cols=236 Identities=28% Similarity=0.300 Sum_probs=183.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc----------------cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~----------------~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
+..++|+++||+|+|||||+++|++... ......|+|.+.....+.. ++..++|||||||++|
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~f 157 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADY 157 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHHH
Confidence 4567899999999999999999985211 2234579999988877777 7889999999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCC--cchhhhhhhhcccchhcc-CCc
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAAD--PERVKNQLGAEGLELEDW-GGK 326 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~--~~~~~~~l~~~~~~~~~~-~~~ 326 (708)
...+..++..+|++++|+|+.+|+..|+.+++..+...++| +|+++||+|+.+.. .+.+..++....... .| ..+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~-g~~~~~ 236 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY-EFPGDD 236 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc-CCCcCc
Confidence 99889999999999999999999999999999999999999 78899999996421 111111222211000 11 136
Q ss_pred ceEEEEeeecCCCc------------------hhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEee
Q 005218 327 VQVVEVSAVKKTGL------------------DDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAG 388 (708)
Q Consensus 327 ~~vi~vSAktg~GI------------------~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G 388 (708)
+|++++||.+|.++ ..|++.|.... ..+..+.+.|+..+|.+++..++.|.+++|.|.+|
T Consensus 237 ~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~--~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG 314 (478)
T PLN03126 237 IPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYI--PIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERG 314 (478)
T ss_pred ceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhC--CCCCCccccceeeEEEEEEEeCCceEEEEEEEEcC
Confidence 89999999998543 23444444321 11223356799999999999999999999999999
Q ss_pred EEcCCCEEEEccc----cceEEEEecccCCcccccCCCCcEEE
Q 005218 389 TLVCGQHVVVGHE----WGRIRAIRDMVGKSTDKARPAMPVEI 427 (708)
Q Consensus 389 ~L~~gd~v~~g~~----~~kVr~i~~~~~~~v~~a~~g~~V~i 427 (708)
.+++||.|++++. ..+|++|+. ++..++.|.||+.|.+
T Consensus 315 ~i~~Gd~v~i~p~~~~~~~~VksI~~-~~~~v~~A~aG~~v~l 356 (478)
T PLN03126 315 TVKVGETVDIVGLRETRSTTVTGVEM-FQKILDEALAGDNVGL 356 (478)
T ss_pred eEecCCEEEEecCCCceEEEEEEEEE-CCeECCEEeCCceeee
Confidence 9999999999874 357999984 5788999999999887
No 33
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=3.6e-27 Score=251.69 Aligned_cols=327 Identities=24% Similarity=0.346 Sum_probs=240.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc---------------ccccccCceEEeeeEEEEEec----CCeeEEEeeCCCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS---------------LVAKEAGGITQHMGAFVVGMS----TGASITFLDTPGH 247 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~---------------~~~~~~~gtT~di~~~~v~~~----~g~~v~liDTpG~ 247 (708)
.+-.+++|+.|.+||||||.++|+... ......+|+|.......+.+. ..+.++|||||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 355789999999999999999996532 234456899998877776664 3488999999999
Q ss_pred chhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-ccchhccCCc
Q 005218 248 AAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GLELEDWGGK 326 (708)
Q Consensus 248 ~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~~~~~~~~~ 326 (708)
-+|+-...+++..|.++|||+||+.|+..||+...-.+...+.-+|-|+||+||+.++++++.+++.+. ++. .
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid------~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGID------A 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCC------c
Confidence 999999999999999999999999999999999988888899999999999999999999998887653 222 1
Q ss_pred ceEEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccce--
Q 005218 327 VQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGR-- 404 (708)
Q Consensus 327 ~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~k-- 404 (708)
...+.+|||||.|+++++++|... .+.++.+++.|+.+.+++++++.++|.++..+|..|++++||.|.+..+..+
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~--iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~ 238 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEK--IPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYE 238 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhh--CCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEE
Confidence 257899999999999999999986 4556678899999999999999999999999999999999999998765332
Q ss_pred EEEE--ecccCCcccccCCCCcEEEe-ccCCCC--CCCCeEEEeCCHHHHHHhhhhhhhH---------HHHHHHHHhHH
Q 005218 405 IRAI--RDMVGKSTDKARPAMPVEIE-GLKGLP--MAGDDIIVVDSEERARMLSSGRKKK---------FEKDRVRKINE 470 (708)
Q Consensus 405 Vr~i--~~~~~~~v~~a~~g~~V~i~-gl~~~~--~~Gd~~~~v~~~~~a~~~~~~~~~~---------~~~~~~~~~~~ 470 (708)
|..+ ............+|+..-+. |++++. ..||++..+.+. ....+-.+++.+ ...+..+.+.+
T Consensus 239 V~evGvftP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p-~~e~LpGfk~~~P~Vf~GlyPid~~dye~Lrd 317 (603)
T COG0481 239 VDEVGIFTPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNP-ATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRD 317 (603)
T ss_pred EEEEeeccCCccccccccCCceeEEEEeeeecccCcccceEeccCCC-ccccCCCCCcCCceEEEeecccChhHHHHHHH
Confidence 3333 23344566778899887654 666543 589999977643 223333333311 11111211111
Q ss_pred HhhhccCCCC----CCC-CCccccEEEEecccccH--HHHHHHHH-hCCC------CceEEEEEEec
Q 005218 471 ERTENLEPSE----DVP-KRAEMPVIVKADVQGTV--QAVTDALK-TLNS------PQLFVNVVHVG 523 (708)
Q Consensus 471 ~~~~~~~~~~----~~~-~~~~~~~iiKad~~Gsl--EAi~~~l~-~~~~------~~v~i~Iv~~~ 523 (708)
. ++.+..++ -++ .-..+++=++|..+|.| |-|.+-|+ +|+- +.|.++|...+
T Consensus 318 A-leKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~TaPsV~Y~v~~~~ 383 (603)
T COG0481 318 A-LEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYKVELTD 383 (603)
T ss_pred H-HHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEecCCceEEEEEEcC
Confidence 1 11110000 011 23468888899999987 45777775 3432 45666665544
No 34
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.95 E-value=5.3e-27 Score=262.25 Aligned_cols=237 Identities=24% Similarity=0.268 Sum_probs=184.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc-------------------------------cccccCceEEeeeEEEEEecC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL-------------------------------VAKEAGGITQHMGAFVVGMST 235 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~-------------------------------~~~~~~gtT~di~~~~v~~~~ 235 (708)
+...+|+++||+++|||||+.+|+.... ......|+|.++....+.+ +
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence 3457899999999999999999864211 1122469999998888777 8
Q ss_pred CeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCC-------hhHHHHHHHhhhcCCC-EEEEEeCCCCCC--CC
Q 005218 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVM-------PQTLEAIAHANAANVP-IVVAINKCDKPA--AD 305 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~-------~q~~~~l~~l~~~~~p-iIvViNK~Dl~~--~~ 305 (708)
++.++|+|||||++|...+..++..+|++|+|+|+++|.. .|+.+++..+...++| +|+++||+|+.+ .+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhh
Confidence 8999999999999999999999999999999999998742 6999999999889996 788999999862 22
Q ss_pred cchhhhhhhhcccchhccC---CcceEEEEeeecCCCchh------------HHHHHHHHHHHcccccccCCCcceeEEE
Q 005218 306 PERVKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVE 370 (708)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~---~~~~vi~vSAktg~GI~~------------L~~~I~~~~~~~~~~~~~~~p~~~~V~e 370 (708)
..++.+...+....+...+ ..++++++||++|+|+.+ |++.|.. ...+..+.+.|+..+|.+
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~---i~~p~~~~~~plr~~I~~ 240 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ---INEPKRPSDKPLRLPLQD 240 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh---cCCCccccCCCcEEEEEE
Confidence 2222211111111111111 247899999999999853 5555543 222333457899999999
Q ss_pred EEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEe
Q 005218 371 ARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 371 ~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
++..++.|++++|+|.+|.+++||.|+++|. ..+|++|+ .++.++.+|.||+.|.+.
T Consensus 241 v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~-~~~~~v~~a~aGd~v~i~ 299 (447)
T PLN00043 241 VYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVE-MHHESLQEALPGDNVGFN 299 (447)
T ss_pred EEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEE-ECCeEeCEecCCCeEEEE
Confidence 9999999999999999999999999999985 46799998 457899999999998874
No 35
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.95 E-value=1.7e-26 Score=256.05 Aligned_cols=249 Identities=24% Similarity=0.224 Sum_probs=181.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCccc---------------------------------ccccCceEEeeeEEEEEecCC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLV---------------------------------AKEAGGITQHMGAFVVGMSTG 236 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~---------------------------------~~~~~gtT~di~~~~v~~~~g 236 (708)
.+|+++||+|+|||||+++|+..... .....|+|++.....+.+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 47999999999999999999643211 112358889988888877 78
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcchhhhhhhh
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLGA 315 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~~ 315 (708)
.+++|+|||||++|...+..++..+|++++|+|+..|+.+|+.+++..+...++| +|+++||+|+.+.+.+.+.....+
T Consensus 80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~ 159 (406)
T TIGR02034 80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKD 159 (406)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHH
Confidence 8999999999999988888899999999999999999999999999888877775 888999999975443322211111
Q ss_pred cccchhccC-CcceEEEEeeecCCCchh------------HHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEE
Q 005218 316 EGLELEDWG-GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTT 382 (708)
Q Consensus 316 ~~~~~~~~~-~~~~vi~vSAktg~GI~~------------L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~ 382 (708)
....+..++ .+++++++||++|.|+++ |++.|... ..+....+.|+...|.+++.....+.-+.
T Consensus 160 ~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~---~~~~~~~~~p~r~~i~~v~~~~~~~~g~~ 236 (406)
T TIGR02034 160 YLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETV---EVERDAQDLPLRFPVQYVNRPNLDFRGYA 236 (406)
T ss_pred HHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHhc---CCCCCcCCCCcccceEEEeecCCCcEEEE
Confidence 111111111 246899999999999986 44544432 12222346788887877754322223367
Q ss_pred EEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEeccCCC-CCCCCeEEEe
Q 005218 383 AIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGL-PMAGDDIIVV 443 (708)
Q Consensus 383 ~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~-~~~Gd~~~~v 443 (708)
|.|.+|++++||.|.+.|. ..+|++|+. ++.++++|.||+.|.+..-... -..|+.+...
T Consensus 237 G~v~~G~l~~gd~v~i~P~~~~~~VksI~~-~~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~ 299 (406)
T TIGR02034 237 GTIASGSVHVGDEVVVLPSGRSSRVARIVT-FDGDLEQARAGQAVTLTLDDEIDISRGDLLAAA 299 (406)
T ss_pred EEEecceeecCCEEEEeCCCcEEEEEEEEE-CCcccCEeCCCCEEEEEECCccccCCccEEEcC
Confidence 9999999999999999874 468999984 5678999999999998643211 1467766543
No 36
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.94 E-value=8.2e-26 Score=266.24 Aligned_cols=301 Identities=26% Similarity=0.257 Sum_probs=223.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc------------------cccCceEEeeeEEEEEecCCeeEEEeeCCCcch
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA------------------KEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~------------------~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~ 249 (708)
+-++|+|+||+|+|||||+|+|+...... ...+|+|.+.....+.+ +++.++|||||||.+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHVD 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCcc
Confidence 45799999999999999999997432211 12468999988888888 899999999999999
Q ss_pred hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-cc----------
Q 005218 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL---------- 318 (708)
Q Consensus 250 f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~---------- 318 (708)
|...+..+++.+|++++|+|+.++...++...+..+...++|+++++||+|+...+.....+.+... +.
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis 167 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIG 167 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEeccc
Confidence 9888888999999999999999999999999999998889999999999999865433222222110 00
Q ss_pred --------------------------------------------------------------------chhc--------
Q 005218 319 --------------------------------------------------------------------ELED-------- 322 (708)
Q Consensus 319 --------------------------------------------------------------------~~~~-------- 322 (708)
..+.
T Consensus 168 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~ 247 (689)
T TIGR00484 168 AEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKG 247 (689)
T ss_pred cCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 0000
Q ss_pred --cCCcceEEEEeeecCCCchhHHHHHHHHHHHcc-----------------cccccCCCcceeEEEEEeeCCCCcEEEE
Q 005218 323 --WGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMN-----------------LKARVDGPAQAYVVEARLDKGRGPLTTA 383 (708)
Q Consensus 323 --~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~-----------------~~~~~~~p~~~~V~e~~~~~~~G~v~~~ 383 (708)
.+..+|++..||+++.|++.|++.|...+..+. ...+++.|+.++|+++..+++.|.++.+
T Consensus 248 ~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~ 327 (689)
T TIGR00484 248 VLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQLTFV 327 (689)
T ss_pred HhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeEEEE
Confidence 013468899999999999999999998654321 1123467899999999999999999999
Q ss_pred EEEeeEEcCCCEEEEcccc-----ceEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhh
Q 005218 384 IVKAGTLVCGQHVVVGHEW-----GRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKK 458 (708)
Q Consensus 384 ~V~~G~L~~gd~v~~g~~~-----~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~ 458 (708)
+|.+|+|++||.|+..... +++..+......+++++.+|+.+.|.|+++. .+||++....+..
T Consensus 328 RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~~----------- 395 (689)
T TIGR00484 328 RVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT-TTGDTLCDPKIDV----------- 395 (689)
T ss_pred EEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCC-CCCCEEeCCCCcc-----------
Confidence 9999999999999865422 2344445445568899999999999999887 7899996332100
Q ss_pred HHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEE
Q 005218 459 KFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV 519 (708)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~I 519 (708)
.+ ... ....+.+.+.|.+...+-.+.|.++|.++..++..+.|
T Consensus 396 -----~~--------~~~-----~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v 438 (689)
T TIGR00484 396 -----IL--------ERM-----EFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRT 438 (689)
T ss_pred -----cc--------CCC-----CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEE
Confidence 00 000 00235566677777777777777777776655555444
No 37
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.94 E-value=2.2e-26 Score=256.69 Aligned_cols=236 Identities=21% Similarity=0.278 Sum_probs=182.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc---cccccCceEEeeeEEEEE---------------ecC--------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL---VAKEAGGITQHMGAFVVG---------------MST-------------- 235 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~---~~~~~~gtT~di~~~~v~---------------~~~-------------- 235 (708)
...+|+++||++||||||+.+|++... ......|+|.+.++.... ++.
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 447899999999999999999987543 335557888887665431 111
Q ss_pred ---CeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC-CChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCc-chh
Q 005218 236 ---GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-VMPQTLEAIAHANAANVP-IVVAINKCDKPAADP-ERV 309 (708)
Q Consensus 236 ---g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g-~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~-~~~ 309 (708)
...++|+|||||++|...+..++..+|++++|+|+.++ ..+|+.+++..+...+++ +|+|+||+|+.+.+. ++.
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~ 192 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQ 192 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHH
Confidence 24789999999999999989999999999999999986 789999999888777776 889999999964211 111
Q ss_pred hhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCC--------CCcEE
Q 005218 310 KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG--------RGPLT 381 (708)
Q Consensus 310 ~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~--------~G~v~ 381 (708)
.+++.+... ..+....+++++||++|.|++.|++.|..... .+..+.+.|++.+|.++|...+ .|+++
T Consensus 193 ~~ei~~~l~--~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp--~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv 268 (460)
T PTZ00327 193 YEEIRNFVK--GTIADNAPIIPISAQLKYNIDVVLEYICTQIP--IPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVA 268 (460)
T ss_pred HHHHHHHHH--hhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC--CCCCCCCCCcEEEEEEEEeecccCCcccCCceEEE
Confidence 222222110 11224579999999999999999999986432 2223456788888998875543 79999
Q ss_pred EEEEEeeEEcCCCEEEEcccc---------------ceEEEEecccCCcccccCCCCcEEEe
Q 005218 382 TAIVKAGTLVCGQHVVVGHEW---------------GRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 382 ~~~V~~G~L~~gd~v~~g~~~---------------~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
+|++.+|++++||.|.++|.. .+|++|+ .++..+++|.||+.|.|.
T Consensus 269 ~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~-~~~~~v~~a~aG~~vai~ 329 (460)
T PTZ00327 269 GGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLF-AENNELQYAVPGGLIGVG 329 (460)
T ss_pred EEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEE-ECCeECCEEcCCCEEEEE
Confidence 999999999999999999742 4799998 568899999999998885
No 38
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.94 E-value=7.6e-26 Score=254.89 Aligned_cols=254 Identities=19% Similarity=0.186 Sum_probs=183.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc---------------------------------cccCceEEeeeEEEEEe
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA---------------------------------KEAGGITQHMGAFVVGM 233 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~---------------------------------~~~~gtT~di~~~~v~~ 233 (708)
+..++|+++||+|+|||||+++|+.....+ ....|+|.+.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 455899999999999999999997543211 11257788887777776
Q ss_pred cCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCC-CEEEEEeCCCCCCCCcchhhhh
Q 005218 234 STGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANV-PIVVAINKCDKPAADPERVKNQ 312 (708)
Q Consensus 234 ~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~-piIvViNK~Dl~~~~~~~~~~~ 312 (708)
++..++|||||||++|...+..++..+|++++|+|+.+|+.+|+.+++..+...++ |+|+++||+|+.+.+.+.+...
T Consensus 105 -~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i 183 (474)
T PRK05124 105 -EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERI 183 (474)
T ss_pred -CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHH
Confidence 78899999999999998888888999999999999999999999998888777765 5889999999975443322211
Q ss_pred hhhcccchhcc--CCcceEEEEeeecCCCchhHHH--------HHHHHHHHccc-ccccCCCcceeEEEEEeeCCCCcEE
Q 005218 313 LGAEGLELEDW--GGKVQVVEVSAVKKTGLDDLEV--------ALLLQAEMMNL-KARVDGPAQAYVVEARLDKGRGPLT 381 (708)
Q Consensus 313 l~~~~~~~~~~--~~~~~vi~vSAktg~GI~~L~~--------~I~~~~~~~~~-~~~~~~p~~~~V~e~~~~~~~G~v~ 381 (708)
..+....+..+ ....+++++||++|.|++++.+ .|...++.... ....+.|+..+|.+++........+
T Consensus 184 ~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~ 263 (474)
T PRK05124 184 REDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGY 263 (474)
T ss_pred HHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccce
Confidence 11111101111 1247899999999999987532 13333333322 2234678888888775432222225
Q ss_pred EEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEeccC--CCCCCCCeEEEe
Q 005218 382 TAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIEGLK--GLPMAGDDIIVV 443 (708)
Q Consensus 382 ~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~gl~--~~~~~Gd~~~~v 443 (708)
.|+|.+|+|++||.|+++|. ..+|++|+. ++..+..|.||+.|.+..-. ++ ..|+.+...
T Consensus 264 ~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~-~~~~v~~A~aG~~V~l~L~~~~~i-~rG~VL~~~ 327 (474)
T PRK05124 264 AGTLASGVVKVGDRVKVLPSGKESNVARIVT-FDGDLEEAFAGEAITLVLEDEIDI-SRGDLLVAA 327 (474)
T ss_pred EEEEEeEEEecCCEEEEecCCceEEEEEEEE-cCccccCcCCCCEEEEEeCCcccc-CCccEEECC
Confidence 79999999999999999985 357999984 46688999999999886532 22 467776644
No 39
>PRK00007 elongation factor G; Reviewed
Probab=99.94 E-value=1.4e-25 Score=264.17 Aligned_cols=302 Identities=26% Similarity=0.251 Sum_probs=227.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc---c---------------ccccCceEEeeeEEEEEecCCeeEEEeeCCCcch
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL---V---------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~---~---------------~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~ 249 (708)
+-++|+|+||+|+|||||+|+|+.... . ....+|+|++.....+.+ .++.++|+|||||.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHH
Confidence 457999999999999999999974211 1 113578999988888888 899999999999999
Q ss_pred hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-cc----------
Q 005218 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL---------- 318 (708)
Q Consensus 250 f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~---------- 318 (708)
|.....++++.+|++++|+|+..|+..|+..++..+...++|+|+++||+|+.+.+.....+.+.+. +.
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis 167 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIG 167 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecCc
Confidence 9888888999999999999999999999999999999999999999999999765433222222100 00
Q ss_pred ---------------------c-------------------------------------hh-------------------
Q 005218 319 ---------------------E-------------------------------------LE------------------- 321 (708)
Q Consensus 319 ---------------------~-------------------------------------~~------------------- 321 (708)
. ++
T Consensus 168 a~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~ 247 (693)
T PRK00007 168 AEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALRK 247 (693)
T ss_pred cCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 0 00
Q ss_pred --ccCCcceEEEEeeecCCCchhHHHHHHHHHHHcc------------------cccccCCCcceeEEEEEeeCCCCcEE
Q 005218 322 --DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMN------------------LKARVDGPAQAYVVEARLDKGRGPLT 381 (708)
Q Consensus 322 --~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~------------------~~~~~~~p~~~~V~e~~~~~~~G~v~ 381 (708)
..+..+|++..||+++.|++.|++.|...+..+. ...+++.|+.++|+++..+++.|.++
T Consensus 248 ~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia 327 (693)
T PRK00007 248 ATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKLT 327 (693)
T ss_pred HHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCCcEE
Confidence 0013468899999999999999999988654321 01234678999999999999999999
Q ss_pred EEEEEeeEEcCCCEEEEcccc--c---eEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhh
Q 005218 382 TAIVKAGTLVCGQHVVVGHEW--G---RIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGR 456 (708)
Q Consensus 382 ~~~V~~G~L~~gd~v~~g~~~--~---kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~ 456 (708)
.++|.+|+|++||.|+..... . ++..+......+++++.||+.+.|.|+++. .+||++.......
T Consensus 328 ~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~GdtL~~~~~~~--------- 397 (693)
T PRK00007 328 FFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT-TTGDTLCDEKNPI--------- 397 (693)
T ss_pred EEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccC-CcCCEeeCCCCcc---------
Confidence 999999999999999864322 2 344455455678999999999999999886 7999986332100
Q ss_pred hhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEE
Q 005218 457 KKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVV 520 (708)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv 520 (708)
.+ .... ...+.+.+-|.+...+....|.++|.++..++..+.|.
T Consensus 398 -------~l--------~~~~-----~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~ 441 (693)
T PRK00007 398 -------IL--------ESME-----FPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVS 441 (693)
T ss_pred -------cc--------CCCC-----CCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEE
Confidence 00 0000 02356777777777777888888888777666555553
No 40
>PRK12739 elongation factor G; Reviewed
Probab=99.94 E-value=1.4e-25 Score=264.33 Aligned_cols=255 Identities=27% Similarity=0.249 Sum_probs=201.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccc------------------ccccCceEEeeeEEEEEecCCeeEEEeeCCCcc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV------------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~------------------~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~ 248 (708)
.+.++|+|+||+|+|||||+++|+..... ....+|+|.+.....+.+ +++.++|+|||||.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHH
Confidence 35678999999999999999999753111 113579999998888888 89999999999999
Q ss_pred hhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-cc---------
Q 005218 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL--------- 318 (708)
Q Consensus 249 ~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~--------- 318 (708)
+|...+.++++.+|++++|+|+.+++..|+..++..+...++|+|+++||+|+...+.....+++... +.
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEecc
Confidence 99998999999999999999999999999999999999999999999999999865433222222110 00
Q ss_pred -----------------------------------------------------------chh------------------
Q 005218 319 -----------------------------------------------------------ELE------------------ 321 (708)
Q Consensus 319 -----------------------------------------------------------~~~------------------ 321 (708)
.++
T Consensus 165 s~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~ 244 (691)
T PRK12739 165 GAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIR 244 (691)
T ss_pred cccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHH
Confidence 000
Q ss_pred ---ccCCcceEEEEeeecCCCchhHHHHHHHHHHHcc-----------------cccccCCCcceeEEEEEeeCCCCcEE
Q 005218 322 ---DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMN-----------------LKARVDGPAQAYVVEARLDKGRGPLT 381 (708)
Q Consensus 322 ---~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~-----------------~~~~~~~p~~~~V~e~~~~~~~G~v~ 381 (708)
..+..+|++..||.++.|++.|++.|...+..+. ...+++.|+.++|+++..+++.|.++
T Consensus 245 ~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~ 324 (691)
T PRK12739 245 KATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLT 324 (691)
T ss_pred HHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEE
Confidence 0012368999999999999999999998754321 11245678999999999999999999
Q ss_pred EEEEEeeEEcCCCEEEEcccc-----ceEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEe
Q 005218 382 TAIVKAGTLVCGQHVVVGHEW-----GRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVV 443 (708)
Q Consensus 382 ~~~V~~G~L~~gd~v~~g~~~-----~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v 443 (708)
.++|.+|+|++||.|+..... +++..+......+++++.+|+.+.|.|+++. .+||++...
T Consensus 325 ~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~ 390 (691)
T PRK12739 325 FFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT-TTGDTLCDE 390 (691)
T ss_pred EEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcc-cCCCEEeCC
Confidence 999999999999999865432 2445555555678999999999999999986 799999643
No 41
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.94 E-value=7.5e-26 Score=251.13 Aligned_cols=236 Identities=25% Similarity=0.317 Sum_probs=178.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc---cccccCceEEeeeEEEEE--------------e----c-------CCeeE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL---VAKEAGGITQHMGAFVVG--------------M----S-------TGASI 239 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~---~~~~~~gtT~di~~~~v~--------------~----~-------~g~~v 239 (708)
...+|+++||+|||||||+++|.+... ......|+|.+.....+. . + .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 346899999999999999999976432 123345777766533221 0 0 14689
Q ss_pred EEeeCCCcchhhhhhhcccccccEEEEEEEccCCC-ChhHHHHHHHhhhcCC-CEEEEEeCCCCCCCCcc-hhhhhhhhc
Q 005218 240 TFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEAIAHANAANV-PIVVAINKCDKPAADPE-RVKNQLGAE 316 (708)
Q Consensus 240 ~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~-~~q~~~~l~~l~~~~~-piIvViNK~Dl~~~~~~-~~~~~l~~~ 316 (708)
+|||||||++|...+..++..+|++++|+|++++. ..|+.+++..+...++ |+++++||+|+.+.... .....+...
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~ 162 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF 162 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence 99999999999999888999999999999999987 8899999888877765 58999999999643211 111222211
Q ss_pred ccchhccCCcceEEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCC--------CCcEEEEEEEee
Q 005218 317 GLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG--------RGPLTTAIVKAG 388 (708)
Q Consensus 317 ~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~--------~G~v~~~~V~~G 388 (708)
.. ..+...++++++||++|.|+++|+++|..... .+..+.+.|+..+|.+++...+ +|.+++|++.+|
T Consensus 163 l~--~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~--~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G 238 (406)
T TIGR03680 163 VK--GTVAENAPIIPVSALHNANIDALLEAIEKFIP--TPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG 238 (406)
T ss_pred hh--hcccCCCeEEEEECCCCCChHHHHHHHHHhCC--CCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeC
Confidence 10 11123568999999999999999999987543 2233456789999999885543 677999999999
Q ss_pred EEcCCCEEEEcccc--------------ceEEEEecccCCcccccCCCCcEEEe
Q 005218 389 TLVCGQHVVVGHEW--------------GRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 389 ~L~~gd~v~~g~~~--------------~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
++++||.|.++|.. .+|++|+ .++.++++|.||+.|.|.
T Consensus 239 ~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~-~~~~~~~~a~~G~~v~i~ 291 (406)
T TIGR03680 239 KLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLR-AGGYKVEEARPGGLVGVG 291 (406)
T ss_pred EEeCCCEEEEccCccccccccccccccceEEeEEE-ECCEECCEEcCCCEEEEe
Confidence 99999999998752 4799998 467889999999999874
No 42
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.94 E-value=4.3e-25 Score=250.89 Aligned_cols=338 Identities=19% Similarity=0.218 Sum_probs=243.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc----------------------cccCceEEeeeEEEEEecCCeeEEEeeC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA----------------------KEAGGITQHMGAFVVGMSTGASITFLDT 244 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~----------------------~~~~gtT~di~~~~v~~~~g~~v~liDT 244 (708)
.+..+|+|+||+|+|||||+++|+.....+ ....|+|.......+.+ +++.++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 356799999999999999999996422111 11235555555556666 8899999999
Q ss_pred CCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-cc-----
Q 005218 245 PGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL----- 318 (708)
Q Consensus 245 pG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~----- 318 (708)
|||.+|.....++++.+|++|+|+|+++++..++...+..+...++|+++++||+|+...+..++..++.+. +.
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 999999988888999999999999999999999999999888889999999999999765543222222110 00
Q ss_pred --------------------------------------------chhc------------------------------cC
Q 005218 319 --------------------------------------------ELED------------------------------WG 324 (708)
Q Consensus 319 --------------------------------------------~~~~------------------------------~~ 324 (708)
.++. .+
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~ 246 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAG 246 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcC
Confidence 0000 01
Q ss_pred CcceEEEEeeecCCCchhHHHHHHHHHHHccccc-------ccCCCcceeEEEEEe---eCCCCcEEEEEEEeeEEcCCC
Q 005218 325 GKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-------RVDGPAQAYVVEARL---DKGRGPLTTAIVKAGTLVCGQ 394 (708)
Q Consensus 325 ~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~-------~~~~p~~~~V~e~~~---~~~~G~v~~~~V~~G~L~~gd 394 (708)
..+|+++.||+++.|+..|++.|...+..+.... +...++.++|+++.. ++++|.++.++|.+|++++|+
T Consensus 247 ~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~ 326 (526)
T PRK00741 247 ELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGM 326 (526)
T ss_pred CeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEECCCC
Confidence 2378999999999999999999999765442211 123568999999984 468999999999999999999
Q ss_pred EEEEcccc-----ceEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhH
Q 005218 395 HVVVGHEW-----GRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKIN 469 (708)
Q Consensus 395 ~v~~g~~~-----~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~ 469 (708)
.|+..... +++..+.......+++|.||+.+.+.+++.. .+||++..-. . + . +
T Consensus 327 ~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~-~~GDTL~~~~--~----~-~----------~---- 384 (526)
T PRK00741 327 KVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI-QIGDTFTQGE--K----L-K----------F---- 384 (526)
T ss_pred EEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCC-ccCCCccCCC--c----c-c----------c----
Confidence 99876533 2345566666778999999999999999886 7999986321 0 0 0 0
Q ss_pred HHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCC
Q 005218 470 EERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKS 549 (708)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~ 549 (708)
.... . -.+.+..-|.+...+-.+.+...|.+|..++ .+.+....- ++..||++-=.+
T Consensus 385 ----~~i~----~-~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED-~l~~~~~~~-------------t~e~il~g~G~l 441 (526)
T PRK00741 385 ----TGIP----N-FAPELFRRVRLKNPLKQKQLQKGLVQLSEEG-AVQVFRPLD-------------NNDLILGAVGQL 441 (526)
T ss_pred ----CCCC----C-CCccEEEEEEECCchhHHHHHHHHHHHhhcC-CeEEEECCC-------------CCCEEEEEEeHH
Confidence 0000 1 2367888999999999999999999998877 466655432 345666653322
Q ss_pred Cch-hHHHHHHHcCCeEEEcch
Q 005218 550 PPT-SVSQAATQAGIKILMHSI 570 (708)
Q Consensus 550 ~~~-~~~~~a~~~~V~i~~~~i 570 (708)
.-+ ++.++..+.||.+.....
T Consensus 442 hleV~~~RL~~ey~v~v~~~~~ 463 (526)
T PRK00741 442 QFEVVAHRLKNEYNVEAIYEPV 463 (526)
T ss_pred HHHHHHHHHHHHhCCEEEEecC
Confidence 222 234445555666655443
No 43
>PRK13351 elongation factor G; Reviewed
Probab=99.94 E-value=5.1e-25 Score=259.94 Aligned_cols=254 Identities=29% Similarity=0.344 Sum_probs=200.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc------------------cccCceEEeeeEEEEEecCCeeEEEeeCCCcch
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA------------------KEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~------------------~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~ 249 (708)
+..+|+|+||+|+|||||+++|+...... ....++|.......+.+ ++..++|||||||.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 45799999999999999999997532110 11256677766667777 889999999999999
Q ss_pred hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-cc----------
Q 005218 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL---------- 318 (708)
Q Consensus 250 f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~---------- 318 (708)
|...+..+++.+|++++|+|++++...++...|..+...++|+++++||+|+...+.....+++... +.
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P~~ 165 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIG 165 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 9999999999999999999999999999999999888889999999999999876543333332110 00
Q ss_pred -----------------c-----------------------------------------hh-------------------
Q 005218 319 -----------------E-----------------------------------------LE------------------- 321 (708)
Q Consensus 319 -----------------~-----------------------------------------~~------------------- 321 (708)
. ++
T Consensus 166 ~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~ 245 (687)
T PRK13351 166 SEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLRE 245 (687)
T ss_pred cCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 0 00
Q ss_pred --ccCCcceEEEEeeecCCCchhHHHHHHHHHHHccc----------------ccccCCCcceeEEEEEeeCCCCcEEEE
Q 005218 322 --DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL----------------KARVDGPAQAYVVEARLDKGRGPLTTA 383 (708)
Q Consensus 322 --~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~----------------~~~~~~p~~~~V~e~~~~~~~G~v~~~ 383 (708)
..+..+|++..||++|.|++.|++.|......+.. ..++++|+.++|+++..+++.|.++.+
T Consensus 246 ~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~ 325 (687)
T PRK13351 246 GTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYL 325 (687)
T ss_pred HHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEE
Confidence 00124789999999999999999999987543321 114567899999999999999999999
Q ss_pred EEEeeEEcCCCEEEEcccc-----ceEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEe
Q 005218 384 IVKAGTLVCGQHVVVGHEW-----GRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVV 443 (708)
Q Consensus 384 ~V~~G~L~~gd~v~~g~~~-----~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v 443 (708)
+|.+|+|++||.|++.+.. +++..+.......++++.||+.+.|.|+++. .+||++...
T Consensus 326 RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~ 389 (687)
T PRK13351 326 RVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL-ETGDTLHDS 389 (687)
T ss_pred EEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccC-ccCCEEeCC
Confidence 9999999999999887632 3455555556778999999999999999987 689999644
No 44
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.93 E-value=2.8e-25 Score=259.58 Aligned_cols=252 Identities=22% Similarity=0.194 Sum_probs=182.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccccc---------------------------------ccCceEEeeeEEEEEec
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAK---------------------------------EAGGITQHMGAFVVGMS 234 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~---------------------------------~~~gtT~di~~~~v~~~ 234 (708)
..++|+|+||+|+|||||+++|+.....+. ...|+|++.....+.+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~- 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT- 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc-
Confidence 446899999999999999999986443221 1246777777777776
Q ss_pred CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCC-CEEEEEeCCCCCCCCcchhhhhh
Q 005218 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANV-PIVVAINKCDKPAADPERVKNQL 313 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~-piIvViNK~Dl~~~~~~~~~~~l 313 (708)
++.+++|+|||||++|...+..++..+|++++|+|+..|+.+|+.+++..+...++ |+|+++||+|+.+.+.+.+....
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~ 181 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIV 181 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHH
Confidence 78899999999999998888888999999999999999999999999888877775 58899999999754433322211
Q ss_pred hhcccchhccC-CcceEEEEeeecCCCchh------------HHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcE
Q 005218 314 GAEGLELEDWG-GKVQVVEVSAVKKTGLDD------------LEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPL 380 (708)
Q Consensus 314 ~~~~~~~~~~~-~~~~vi~vSAktg~GI~~------------L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v 380 (708)
.+....+..++ .+.+++++||++|.|+++ |++.|... ..+..+.+.|+...|.+++.......-
T Consensus 182 ~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~---~~~~~~~~~p~r~~i~~v~~~~~~~~g 258 (632)
T PRK05506 182 ADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV---EIASDRNLKDFRFPVQYVNRPNLDFRG 258 (632)
T ss_pred HHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC---CCCCCcCCCCceeeEEEEEecCCCceE
Confidence 11111111111 246799999999999974 44444332 111223467888888877643211222
Q ss_pred EEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEeccC--CCCCCCCeEEEeCC
Q 005218 381 TTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIEGLK--GLPMAGDDIIVVDS 445 (708)
Q Consensus 381 ~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~gl~--~~~~~Gd~~~~v~~ 445 (708)
+.|+|.+|++++||.|+++|. ..+|++|+ .++..++.|.||+.|.+..-. ++ ..|+.+....+
T Consensus 259 ~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~-~~~~~~~~a~aG~~v~i~l~~~~~i-~rG~vL~~~~~ 325 (632)
T PRK05506 259 FAGTVASGVVRPGDEVVVLPSGKTSRVKRIV-TPDGDLDEAFAGQAVTLTLADEIDI-SRGDMLARADN 325 (632)
T ss_pred EEEEEecceeecCCEEEEcCCCceEEEEEEE-ECCceeCEEcCCCeEEEEecCcccc-CCccEEecCCC
Confidence 579999999999999999874 46799998 456789999999999986432 22 46887765543
No 45
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.93 E-value=4.7e-25 Score=244.79 Aligned_cols=237 Identities=26% Similarity=0.343 Sum_probs=177.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc---cccccCceEEeeeEEEEEec-------------------------CCee
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL---VAKEAGGITQHMGAFVVGMS-------------------------TGAS 238 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~---~~~~~~gtT~di~~~~v~~~-------------------------~g~~ 238 (708)
+...+|+++||.+||||||+.+|.+... ......|+|.+.......+. ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 3557899999999999999999976321 22335688887654221110 0368
Q ss_pred EEEeeCCCcchhhhhhhcccccccEEEEEEEccCCC-ChhHHHHHHHhhhcCC-CEEEEEeCCCCCCCCcch-hhhhhhh
Q 005218 239 ITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEAIAHANAANV-PIVVAINKCDKPAADPER-VKNQLGA 315 (708)
Q Consensus 239 v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~-~~q~~~~l~~l~~~~~-piIvViNK~Dl~~~~~~~-~~~~l~~ 315 (708)
++|||||||++|......++..+|++++|+|++++. ..++.+++..+...+. |+++|+||+|+.+.+... ..+.+..
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~ 166 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKE 166 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHH
Confidence 999999999999888888888999999999999987 7888888888776765 589999999996532110 1112211
Q ss_pred cccchhccCCcceEEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCC--------CCcEEEEEEEe
Q 005218 316 EGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG--------RGPLTTAIVKA 387 (708)
Q Consensus 316 ~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~--------~G~v~~~~V~~ 387 (708)
... ..+....+++++||++|.|+++|++.|...+. .+..+.+.|+..+|.++|...+ +|.+++|+|.+
T Consensus 167 ~l~--~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~--~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~ 242 (411)
T PRK04000 167 FVK--GTVAENAPIIPVSALHKVNIDALIEAIEEEIP--TPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQ 242 (411)
T ss_pred Hhc--cccCCCCeEEEEECCCCcCHHHHHHHHHHhCC--CCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEe
Confidence 100 00123468999999999999999999987542 2233457789999999885443 57799999999
Q ss_pred eEEcCCCEEEEcccc--------------ceEEEEecccCCcccccCCCCcEEEe
Q 005218 388 GTLVCGQHVVVGHEW--------------GRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 388 G~L~~gd~v~~g~~~--------------~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
|++++||.|.++|.. .+|++|+ .++..+++|.||+.|.|.
T Consensus 243 G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~-~~~~~~~~a~~G~~v~i~ 296 (411)
T PRK04000 243 GVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLR-AGGEKVEEARPGGLVGVG 296 (411)
T ss_pred CEEecCCEEEEcCCcceecccccccccceEEEeEEE-ECCEECCEEcCCCEEEEE
Confidence 999999999998753 4799998 457889999999998875
No 46
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.93 E-value=1.3e-24 Score=247.00 Aligned_cols=338 Identities=17% Similarity=0.186 Sum_probs=239.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc----------------------cccCceEEeeeEEEEEecCCeeEEEeeC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA----------------------KEAGGITQHMGAFVVGMSTGASITFLDT 244 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~----------------------~~~~gtT~di~~~~v~~~~g~~v~liDT 244 (708)
.+..+|+|+||+|+|||||+++|+.....+ ....|+|.......+.+ +++.++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 456799999999999999999986322111 11235666666566666 8899999999
Q ss_pred CCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-c------
Q 005218 245 PGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-G------ 317 (708)
Q Consensus 245 pG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~------ 317 (708)
|||.+|.....++++.+|++|+|+|+++++..++...+..+...++|+++++||+|+...+..++...+... +
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 999999988888899999999999999999999999998888889999999999999755433222211110 0
Q ss_pred -----------------------c-----------------c----------------------hh-----------ccC
Q 005218 318 -----------------------L-----------------E----------------------LE-----------DWG 324 (708)
Q Consensus 318 -----------------------~-----------------~----------------------~~-----------~~~ 324 (708)
+ . ++ ..+
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 247 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGG 247 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcC
Confidence 0 0 00 012
Q ss_pred CcceEEEEeeecCCCchhHHHHHHHHHHHccccc-------ccCCCcceeEEEEEe--e-CCCCcEEEEEEEeeEEcCCC
Q 005218 325 GKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-------RVDGPAQAYVVEARL--D-KGRGPLTTAIVKAGTLVCGQ 394 (708)
Q Consensus 325 ~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~-------~~~~p~~~~V~e~~~--~-~~~G~v~~~~V~~G~L~~gd 394 (708)
.-+|+++.||.++.|++.|++.|...+..+..+. +.+.++.++|+++.. + +++|.++.++|.+|+|++|+
T Consensus 248 ~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~ 327 (527)
T TIGR00503 248 EMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGM 327 (527)
T ss_pred CeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCC
Confidence 2368999999999999999999999765442211 124678999999987 6 58999999999999999999
Q ss_pred EEEEccccc--eEEEE---ecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhH
Q 005218 395 HVVVGHEWG--RIRAI---RDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKIN 469 (708)
Q Consensus 395 ~v~~g~~~~--kVr~i---~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~ 469 (708)
.|+...... ++..+ .......+++|.||+.+.+.++... .+||++.. .. . + . +
T Consensus 328 ~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~-~~GDtl~~-~~-~----~-~----------~---- 385 (527)
T TIGR00503 328 KLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI-QIGDTFTQ-GE-K----I-K----------F---- 385 (527)
T ss_pred EEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCc-ccCCEecC-CC-c----e-e----------e----
Confidence 998765332 33334 4445578999999999999999886 79999864 11 0 0 0 0
Q ss_pred HHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCC
Q 005218 470 EERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKS 549 (708)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~ 549 (708)
... ..-.+.+..-|.+...+-.+.+...|.+|..++. +.+....- ++..||+.-=..
T Consensus 386 ----~~i-----~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~-------------t~e~il~g~Gel 442 (527)
T TIGR00503 386 ----TGI-----PNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLD-------------NNDLIVGAVGVL 442 (527)
T ss_pred ----cCC-----CCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCC-------------CCCEEEEEEeHH
Confidence 000 0024678888999999999999999999987774 66654331 345566543222
Q ss_pred Cch-hHHHHHHHcCCeEEEcch
Q 005218 550 PPT-SVSQAATQAGIKILMHSI 570 (708)
Q Consensus 550 ~~~-~~~~~a~~~~V~i~~~~i 570 (708)
.-+ ++.++..+.||.+.....
T Consensus 443 hleV~~~RL~~ey~v~v~~~~~ 464 (527)
T TIGR00503 443 QFDVVVYRLKEEYNVEARYEPV 464 (527)
T ss_pred HHHHHHHHHHHHhCCeEEEeCC
Confidence 222 224444555666554433
No 47
>PRK12740 elongation factor G; Reviewed
Probab=99.93 E-value=1.2e-24 Score=256.15 Aligned_cols=295 Identities=28% Similarity=0.318 Sum_probs=223.6
Q ss_pred EecCCCCchHHHHHhhcCcccc------------------cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhc
Q 005218 195 MGHVDHGKTSLLDALRQTSLVA------------------KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKR 256 (708)
Q Consensus 195 vG~~nvGKSSLln~L~~~~~~~------------------~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~ 256 (708)
+||+|+|||||+++|+.....+ ...+|+|.+.....+.+ +++.++|||||||.+|...+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~~~~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDFTGEVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHHHHHHHH
Confidence 6999999999999996433211 12368888877778887 8999999999999999888888
Q ss_pred ccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-cc-----------------
Q 005218 257 GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL----------------- 318 (708)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~----------------- 318 (708)
++..+|++++|+|++.+...++...+..+...++|+++|+||+|+...+.....+.+.+. +.
T Consensus 80 ~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~ 159 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTG 159 (668)
T ss_pred HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceE
Confidence 999999999999999999999999998888889999999999999765433333332210 00
Q ss_pred ---------------------------------------------------------ch--h----------ccCCcceE
Q 005218 319 ---------------------------------------------------------EL--E----------DWGGKVQV 329 (708)
Q Consensus 319 ---------------------------------------------------------~~--~----------~~~~~~~v 329 (708)
.+ + ..+..+|+
T Consensus 160 ~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv 239 (668)
T PRK12740 160 VVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPV 239 (668)
T ss_pred EEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 00 0 01124789
Q ss_pred EEEeeecCCCchhHHHHHHHHHHHccc---------------ccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCC
Q 005218 330 VEVSAVKKTGLDDLEVALLLQAEMMNL---------------KARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQ 394 (708)
Q Consensus 330 i~vSAktg~GI~~L~~~I~~~~~~~~~---------------~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd 394 (708)
+..||++|.|++.|++.|...+..+.. ..+++.|+.++|+++..+++.|.++.++|.+|+|++||
T Consensus 240 ~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~ 319 (668)
T PRK12740 240 FCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGD 319 (668)
T ss_pred EeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCC
Confidence 999999999999999999986543311 12456788999999999999999999999999999999
Q ss_pred EEEEcccc-----ceEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhH
Q 005218 395 HVVVGHEW-----GRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKIN 469 (708)
Q Consensus 395 ~v~~g~~~-----~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~ 469 (708)
.|++++.. +++..+......+++++.+|+.+.|.|++.+ ..||++....+.. .+
T Consensus 320 ~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdtl~~~~~~~----------------~~---- 378 (668)
T PRK12740 320 TLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA-ATGDTLCDKGDPI----------------LL---- 378 (668)
T ss_pred EEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCcc-CCCCEEeCCCCcc----------------cc----
Confidence 99987643 3455666556788999999999999999875 7999986432210 00
Q ss_pred HHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEE
Q 005218 470 EERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVV 520 (708)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv 520 (708)
.+.. . ..+.+.+.|.+...+..+.|.++|.++..++..+.|.
T Consensus 379 ----~~~~----~-~~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~ 420 (668)
T PRK12740 379 ----EPME----F-PEPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVE 420 (668)
T ss_pred ----CCCC----C-CCcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEE
Confidence 0000 1 2466778888888888888888888887666655554
No 48
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=243.30 Aligned_cols=290 Identities=23% Similarity=0.215 Sum_probs=205.2
Q ss_pred cccCCCCcchhhhccCcccchhhhhhhhhhhhhccccccccccccccCCCCCcccccCCCCCCcccccCCCceeecchhh
Q 005218 45 HDVSMKVSLIRCFHASPELLARRRDEDSFGLKTARRESNKGKFRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGM 124 (708)
Q Consensus 45 r~a~~geft~Raf~ngk~dl~~~~~e~~~~li~a~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 124 (708)
-...||..+.|-|..+++.=-+-.+-+..+|.....+....+++++|..+. .......-.||..+++
T Consensus 31 V~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai-------------~eADvilfvVD~~~Gi 97 (444)
T COG1160 31 VSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAI-------------EEADVILFVVDGREGI 97 (444)
T ss_pred eecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHH-------------HhCCEEEEEEeCCCCC
Confidence 345789988888877665432111222223332222223333333776665 2233456888999988
Q ss_pred HHH--HHHHHhccCHHHHHHHHHhcccccccCCCCCChhHHHHHHHHhCCceee------------------ecCCCCCC
Q 005218 125 AVV--ELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVAELVVMELGFNVRR------------------IHSSEGTE 184 (708)
Q Consensus 125 a~~--~la~~l~~~~~~l~~~L~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~------------------l~~~~~~~ 184 (708)
+.. .++..|+..-+++ +...+++|+... +....+++.+.++..+.. ++..+..+
T Consensus 98 t~~D~~ia~~Lr~~~kpv----iLvvNK~D~~~~--e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~ 171 (444)
T COG1160 98 TPADEEIAKILRRSKKPV----ILVVNKIDNLKA--EELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEE 171 (444)
T ss_pred CHHHHHHHHHHHhcCCCE----EEEEEcccCchh--hhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCccccc
Confidence 776 6888777443333 567788876522 445677888877766542 11111111
Q ss_pred CC--CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcch----------hh
Q 005218 185 IL--PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAA----------FS 251 (708)
Q Consensus 185 ~~--~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~----------f~ 251 (708)
.. ..+++|+|+|+||+|||||+|+|+++++.+ ++.+|||+|.....+.+ ++..+.|+||+|.+. |+
T Consensus 172 ~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~S 250 (444)
T COG1160 172 EEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYS 250 (444)
T ss_pred ccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEe
Confidence 22 257999999999999999999999998876 89999999999999998 999999999999543 33
Q ss_pred hhhh-cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCC---cchhhhhhhhcccchhccCCcc
Q 005218 252 AMRK-RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKV 327 (708)
Q Consensus 252 ~~~~-~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~ 327 (708)
..+. ..+..||++++|+|++.+...|+...+.++...+.++++|+||||+...+ .+.....+.. .-.+.+..
T Consensus 251 v~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~----~l~~l~~a 326 (444)
T COG1160 251 VARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRR----KLPFLDFA 326 (444)
T ss_pred ehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHH----HhccccCC
Confidence 3333 45789999999999999999999999999999999999999999997642 1222233332 12334567
Q ss_pred eEEEEeeecCCCchhHHHHHHHHHHHccccc
Q 005218 328 QVVEVSAVKKTGLDDLEVALLLQAEMMNLKA 358 (708)
Q Consensus 328 ~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~ 358 (708)
|++++||++|.|+++|++.+....+....+.
T Consensus 327 ~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri 357 (444)
T COG1160 327 PIVFISALTGQGLDKLFEAIKEIYECATRRI 357 (444)
T ss_pred eEEEEEecCCCChHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999988776555443
No 49
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.8e-24 Score=224.21 Aligned_cols=291 Identities=21% Similarity=0.241 Sum_probs=212.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc---------------------------------cccCceEEeeeEEEEEe
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA---------------------------------KEAGGITQHMGAFVVGM 233 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~---------------------------------~~~~gtT~di~~~~v~~ 233 (708)
+...+++.+|+++.|||||+.+|+++...+ ....|+|.|+.+.++..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 356789999999999999999998754321 11259999999999887
Q ss_pred cCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcchhhhh
Q 005218 234 STGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQ 312 (708)
Q Consensus 234 ~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~~~~~ 312 (708)
...++.+.|||||+.|...+..+++.||++|+++|+..|+.+|++.+.-.+...+++ +++++|||||.+.+.+.+.+.
T Consensus 84 -~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 84 -EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred -ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 889999999999999999999999999999999999999999999998888888888 899999999999887665544
Q ss_pred hhhcccchhccC-CcceEEEEeeecCCCc------------hhHHHHHHHHHHHcccc-cccCCCcceeEEEEEee--CC
Q 005218 313 LGAEGLELEDWG-GKVQVVEVSAVKKTGL------------DDLEVALLLQAEMMNLK-ARVDGPAQAYVVEARLD--KG 376 (708)
Q Consensus 313 l~~~~~~~~~~~-~~~~vi~vSAktg~GI------------~~L~~~I~~~~~~~~~~-~~~~~p~~~~V~e~~~~--~~ 376 (708)
..++....+..+ ....++|+||+.|+|+ +.|++.|... ... .....|++.+|..+.-. ..
T Consensus 163 ~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v----~i~~~~~~~~~RfPVQ~V~Rp~~df 238 (431)
T COG2895 163 VADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETV----EIADDRSAKAFRFPVQYVNRPNLDF 238 (431)
T ss_pred HHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhc----cccccccccceeeceEEecCCCCcc
Confidence 433322222222 2347999999999998 3455554432 111 12334566666655433 24
Q ss_pred CCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEeccCCCC-CCCCeEEEeCCHHHHHHhh
Q 005218 377 RGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP-MAGDDIIVVDSEERARMLS 453 (708)
Q Consensus 377 ~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~-~~Gd~~~~v~~~~~a~~~~ 453 (708)
+|. .|++.+|++++||.|++.|+ ..+|+.|...+| .+++|.+|+.|.+.--+++. .-||.++..++.-..
T Consensus 239 RGy--aGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg-~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~~~~---- 311 (431)
T COG2895 239 RGY--AGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG-ELAQASAGEAVTLVLADEIDISRGDLIVAADAPPAV---- 311 (431)
T ss_pred ccc--ceeeeccceecCCeEEEccCCCeeeEEEEeccCC-chhhccCCceEEEEEcceeecccCcEEEccCCCcch----
Confidence 555 79999999999999999875 357999987766 57889999999998666653 468877766554221
Q ss_pred hhhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEec---ccccHHHHH
Q 005218 454 SGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKAD---VQGTVQAVT 504 (708)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad---~~GslEAi~ 504 (708)
.+++ ....-|+.+. |-.+...+.+|.. +.+++++|+
T Consensus 312 --------~~~f----~A~vvWm~~~---pl~pGr~Y~lK~~t~~v~a~V~~i~ 350 (431)
T COG2895 312 --------ADAF----DADVVWMDEE---PLLPGRSYDLKIATRTVRARVEEIK 350 (431)
T ss_pred --------hhhc----ceeEEEecCC---CCCCCceEEEEecceEEEEEeeeeE
Confidence 1111 1234455442 3345667888863 456666664
No 50
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=99.92 E-value=5.2e-26 Score=204.83 Aligned_cols=96 Identities=40% Similarity=0.750 Sum_probs=89.1
Q ss_pred CCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCchhHHHHHHHcCC
Q 005218 484 KRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGI 563 (708)
Q Consensus 484 ~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~~~~~~~a~~~~V 563 (708)
+.+.+|+|||||++||+|||+++|.++++++|+++|++++||+||++||.+|++++|+|+|||+++++++ .++|+++||
T Consensus 13 ~~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~~~a~Ii~FNv~~~~~~-~~~a~~~~V 91 (108)
T PF11987_consen 13 EIKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASASNAIIIAFNVKVSPDA-KDLAKKSGV 91 (108)
T ss_dssp CSSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHHHC-EEEESSS-B-HHH-HHCHHSSTS
T ss_pred CCceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHhhCCEEEEeeCCCCHHH-HHHHHHcCC
Confidence 5788999999999999999999999999999999999999999999999999999999999999999998 889999999
Q ss_pred eEEEcchhhhhHHHHHH
Q 005218 564 KILMHSIIYHLLDDFGN 580 (708)
Q Consensus 564 ~i~~~~iIY~L~d~~~~ 580 (708)
+|++|+|||+|+|++++
T Consensus 92 ~I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 92 KIRSHNVIYDLIDDIKK 108 (108)
T ss_dssp EEEESTTCCHHHHHHHH
T ss_pred EEEEeCHHHHHHHHhhC
Confidence 99999999999999974
No 51
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.2e-24 Score=230.94 Aligned_cols=230 Identities=25% Similarity=0.391 Sum_probs=194.0
Q ss_pred EEEEEecCCCCchHHHHHhhcCcc---cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSL---VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~---~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.|+..||.++|||||+.++.+... ......|+|.|+..+.... ..+.+.|+|+|||++|...+..++...|.++||
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 588999999999999999987554 3355689999999999888 666999999999999999999999999999999
Q ss_pred EEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHH
Q 005218 268 VAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (708)
Q Consensus 268 vDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~ 346 (708)
+|+++|++.|+.+++..+...+++ .++|+||+|+.+. .++.+.+.+...... ..+.+++.+|+++|+||++|.+.
T Consensus 81 V~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i~~Il~~l~--l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 81 VAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKIKQILADLS--LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred EeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHHHHHHhhcc--cccccccccccccCCCHHHHHHH
Confidence 999999999999999999999998 5999999999642 233222222111111 23568899999999999999999
Q ss_pred HHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcccc--ceEEEEecccCCcccccCCCCc
Q 005218 347 LLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW--GRIRAIRDMVGKSTDKARPAMP 424 (708)
Q Consensus 347 I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~--~kVr~i~~~~~~~v~~a~~g~~ 424 (708)
|..+.+ ....+.+.|+..+|..+|..+|.|+|++|.+.+|.++.||.+++.|.. -+||+|+ .++.++++|.+|+.
T Consensus 157 l~~L~~--~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq-~~d~d~~~a~AG~R 233 (447)
T COG3276 157 LIDLLE--EIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQ-AHDVDVEEAKAGQR 233 (447)
T ss_pred HHHhhh--hhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeee-ecCcchhhccccce
Confidence 998775 344456789999999999999999999999999999999999998754 4799999 56778999999999
Q ss_pred EEEe
Q 005218 425 VEIE 428 (708)
Q Consensus 425 V~i~ 428 (708)
|.+.
T Consensus 234 VgLa 237 (447)
T COG3276 234 VGLA 237 (447)
T ss_pred eeee
Confidence 9874
No 52
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=7.3e-23 Score=236.66 Aligned_cols=257 Identities=31% Similarity=0.347 Sum_probs=205.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccc------------------cccCceEEeeeEEEEEecCC-eeEEEeeCCC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVA------------------KEAGGITQHMGAFVVGMSTG-ASITFLDTPG 246 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~------------------~~~~gtT~di~~~~v~~~~g-~~v~liDTpG 246 (708)
+.+-++|+|+||.+||||||..+|+.....+ ...+|+|.......+.+ .+ +.++||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence 4567899999999999999999996533221 12369999988888888 75 9999999999
Q ss_pred cchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhh-----------
Q 005218 247 HAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGA----------- 315 (708)
Q Consensus 247 ~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~----------- 315 (708)
|-+|.....+.++.+|++++|+|+..|+++|+...|+++...++|.|+++||||....+.....+++..
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~ 165 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQL 165 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeec
Confidence 999999999999999999999999999999999999999999999999999999976543222111110
Q ss_pred ---------------------cc----------------c------------------chhcc-----------------
Q 005218 316 ---------------------EG----------------L------------------ELEDW----------------- 323 (708)
Q Consensus 316 ---------------------~~----------------~------------------~~~~~----------------- 323 (708)
++ . .++.+
T Consensus 166 pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~ 245 (697)
T COG0480 166 PIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRK 245 (697)
T ss_pred cccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHH
Confidence 00 0 00000
Q ss_pred ----CCcceEEEEeeecCCCchhHHHHHHHHHHHcc------------------cccccCCCcceeEEEEEeeCCCCcEE
Q 005218 324 ----GGKVQVVEVSAVKKTGLDDLEVALLLQAEMMN------------------LKARVDGPAQAYVVEARLDKGRGPLT 381 (708)
Q Consensus 324 ----~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~------------------~~~~~~~p~~~~V~e~~~~~~~G~v~ 381 (708)
+...|+++-||.++.|++.|++++.+.+..+. ...+.++|+.+.++++..++..|.++
T Consensus 246 ~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~ 325 (697)
T COG0480 246 GTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLT 325 (697)
T ss_pred hhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEE
Confidence 11468999999999999999999998754321 02234789999999999999999999
Q ss_pred EEEEEeeEEcCCCEEEEcccc--ceEEEEecc---cCCcccccCCCCcEEEeccCCCCCCCCeEEEeC
Q 005218 382 TAIVKAGTLVCGQHVVVGHEW--GRIRAIRDM---VGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVD 444 (708)
Q Consensus 382 ~~~V~~G~L~~gd~v~~g~~~--~kVr~i~~~---~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~ 444 (708)
.+++.+|+|++|+.++.++.. .+|..|... ....++++.+|+.+.+.|+++. .+||++...+
T Consensus 326 ~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~-~tGdTl~~~~ 392 (697)
T COG0480 326 FVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA-TTGDTLCDEN 392 (697)
T ss_pred EEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEccccc-ccCCeeecCC
Confidence 999999999999999987644 445555444 4468899999999999999986 7999999776
No 53
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.3e-23 Score=226.44 Aligned_cols=236 Identities=21% Similarity=0.263 Sum_probs=188.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc-------------------------------cccccCceEEeeeEEEEEecCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-------------------------------VAKEAGGITQHMGAFVVGMSTG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~-------------------------------~~~~~~gtT~di~~~~v~~~~g 236 (708)
.-.+++++||+++|||||+.+|+..-- ......|+|.++....++. ..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes-~~ 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES-KS 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-Cc
Confidence 457899999999999999999865211 1123479999999998886 88
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCC-------ChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcch
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-------MPQTLEAIAHANAANVP-IVVAINKCDKPAADPER 308 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~-------~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~ 308 (708)
..++|+|+|||.+|...+..++..||+++||+|++.+. ..|+.++...++..|+. +||++||||+++++.++
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHH
Confidence 99999999999999999999999999999999999753 45899999999988886 99999999999999877
Q ss_pred hhhhhhhcccch-hc--c-CCcceEEEEeeecCCCch------hH---------HHHHHHHHHHcccccccCCCcceeEE
Q 005218 309 VKNQLGAEGLEL-ED--W-GGKVQVVEVSAVKKTGLD------DL---------EVALLLQAEMMNLKARVDGPAQAYVV 369 (708)
Q Consensus 309 ~~~~l~~~~~~~-~~--~-~~~~~vi~vSAktg~GI~------~L---------~~~I~~~~~~~~~~~~~~~p~~~~V~ 369 (708)
+.+.....+..+ +. | ..++.|+|||+.+|+|+- +| ++.|.. ... +..+.+.|+...|.
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~--p~~~~~kPl~ltIs 411 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKI--PERPIDKPLRLTIS 411 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccC--CCCcccCCeEEEhh
Confidence 665443333222 11 2 235689999999999983 23 333333 211 22235679999999
Q ss_pred EEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEe
Q 005218 370 EARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 370 e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
+++..+..|..++|++.+|.+++|+.|+++++ .+.|+.+.. +..+...+.+|+.|.+.
T Consensus 412 di~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~-~~~~~~~a~AGD~Vsl~ 471 (603)
T KOG0458|consen 412 DIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTS-NDEPKTWAVAGDNVSLK 471 (603)
T ss_pred heeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeec-CCCcceeEeeCCEEEEe
Confidence 99999999999999999999999999999885 467999974 46677888889988874
No 54
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.90 E-value=7.7e-23 Score=242.27 Aligned_cols=255 Identities=25% Similarity=0.318 Sum_probs=187.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc----------------cccCceEEeeeEEEEEe--c-CCeeEEEeeCCCcc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA----------------KEAGGITQHMGAFVVGM--S-TGASITFLDTPGHA 248 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~----------------~~~~gtT~di~~~~v~~--~-~g~~v~liDTpG~~ 248 (708)
+.++|+++||+|+|||||+++|+.....+ ....|+|.+.....+.+ . +++.++|+|||||.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 45789999999999999999997543221 12246666654433332 2 47889999999999
Q ss_pred hhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc----chhhhhhhh----cc---
Q 005218 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP----ERVKNQLGA----EG--- 317 (708)
Q Consensus 249 ~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~----~~~~~~l~~----~~--- 317 (708)
+|.....++++.+|++|+|+|+..|+..++..+|..+...++|.|+++||+|+...+. +.....+.. ..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l 178 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLI 178 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999889999999999999999999999999999988888899999999999864432 111111111 00
Q ss_pred --cchh----cc---CCcceEEEEeeecCCCch----------------------------------hHHHHHHHHHHHc
Q 005218 318 --LELE----DW---GGKVQVVEVSAVKKTGLD----------------------------------DLEVALLLQAEMM 354 (708)
Q Consensus 318 --~~~~----~~---~~~~~vi~vSAktg~GI~----------------------------------~L~~~I~~~~~~~ 354 (708)
+... .| ...-.+++.||+.+.|+. .|++.|...+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP 258 (731)
T PRK07560 179 KGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNP 258 (731)
T ss_pred HHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCCh
Confidence 0000 01 111246788999998886 5677776643322
Q ss_pred c-----------------------cccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEe
Q 005218 355 N-----------------------LKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIR 409 (708)
Q Consensus 355 ~-----------------------~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~ 409 (708)
. ...+++.|+.++|+++..+++.|.++.++|.+|+|++||.|+..+. ..+|+.|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~ 338 (731)
T PRK07560 259 IEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVG 338 (731)
T ss_pred hhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheeh
Confidence 1 0123456889999999999999999999999999999999987553 34566665
Q ss_pred cc---cCCcccccCCCCcEEEeccCCCCCCCCeEEEe
Q 005218 410 DM---VGKSTDKARPAMPVEIEGLKGLPMAGDDIIVV 443 (708)
Q Consensus 410 ~~---~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v 443 (708)
.. ...+++++.||+.|.|.|+++. .+||++...
T Consensus 339 ~~~g~~~~~v~~a~AGdIv~i~gl~~~-~~GdtL~~~ 374 (731)
T PRK07560 339 IYMGPEREEVEEIPAGNIAAVTGLKDA-RAGETVVSV 374 (731)
T ss_pred hhhcCCCceeeeECCCCEEEEEccccc-ccCCEEeCC
Confidence 44 3468899999999999999876 589998644
No 55
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.4e-23 Score=209.83 Aligned_cols=235 Identities=32% Similarity=0.399 Sum_probs=175.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC----------------cccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT----------------SLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~----------------~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~ 251 (708)
.-.+|+.+||.|||||||.-++... +.......|+|.......++. ....+-.+|+|||.+|.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaDYv 89 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYV 89 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHHHH
Confidence 4578999999999999999998431 011234579999988888877 88999999999999999
Q ss_pred hhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcch-------hhhhhhhcccchhcc
Q 005218 252 AMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPER-------VKNQLGAEGLELEDW 323 (708)
Q Consensus 252 ~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~-------~~~~l~~~~~~~~~~ 323 (708)
..+..++.+.|.+|||++|++|.++|+++++...+..++| +++++||+|+.+ +++. +++-|.++++ -
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd-d~ellelVemEvreLLs~y~f----~ 164 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD-DEELLELVEMEVRELLSEYGF----P 164 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC-cHHHHHHHHHHHHHHHHHcCC----C
Confidence 9999999999999999999999999999999999999998 888999999985 2221 1122222222 1
Q ss_pred CCcceEEEEeeecC-CC-------chhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCE
Q 005218 324 GGKVQVVEVSAVKK-TG-------LDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQH 395 (708)
Q Consensus 324 ~~~~~vi~vSAktg-~G-------I~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~ 395 (708)
+.+.|++.-||+.. +| |.+|++++.... +.+..+.+.||...|-+++...++|++++|+|.+|+|++|+.
T Consensus 165 gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi--p~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~e 242 (394)
T COG0050 165 GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI--PTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEE 242 (394)
T ss_pred CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC--CCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCE
Confidence 34678999888653 33 345555554432 233445678999999999999999999999999999999999
Q ss_pred EEEcccc----ceEEEEecccCCcccccCCCCcEE--EeccC
Q 005218 396 VVVGHEW----GRIRAIRDMVGKSTDKARPAMPVE--IEGLK 431 (708)
Q Consensus 396 v~~g~~~----~kVr~i~~~~~~~v~~a~~g~~V~--i~gl~ 431 (708)
+.+.... ..+..+. ...+.++++.+|+.|- +.|.+
T Consensus 243 veivG~~~~~kttvtgve-mfrk~ld~~~AGdnvg~llRg~~ 283 (394)
T COG0050 243 VEIVGIKETQKTTVTGVE-MFRKLLDEGQAGDNVGVLLRGVK 283 (394)
T ss_pred EEEecccccceeEEEhHH-HHHHHHhccccCCCcceEEEecc
Confidence 8774422 1233322 2345566667776654 44554
No 56
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=5.8e-23 Score=198.77 Aligned_cols=162 Identities=65% Similarity=0.979 Sum_probs=132.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec--CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~--~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
|.|+++|++|+|||||+|+|....+.....+++|+++....+... .+..+.+|||||+..|..++..++..+|++++|
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v 80 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence 579999999999999999999888877777889998877777663 378999999999999998888889999999999
Q ss_pred EEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccch-hccCCcceEEEEeeecCCCchhHHHH
Q 005218 268 VAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLEL-EDWGGKVQVVEVSAVKKTGLDDLEVA 346 (708)
Q Consensus 268 vDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~-~~~~~~~~vi~vSAktg~GI~~L~~~ 346 (708)
+|++++...++.+.+..+...++|+++|+||+|+.....+.+...+....... +.+...++++++||++|.|+++|+++
T Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T cd01887 81 VAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEA 160 (168)
T ss_pred EECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHH
Confidence 99999888888888888888899999999999997544334434333322211 12334568999999999999999999
Q ss_pred HHHHH
Q 005218 347 LLLQA 351 (708)
Q Consensus 347 I~~~~ 351 (708)
|....
T Consensus 161 l~~~~ 165 (168)
T cd01887 161 ILLLA 165 (168)
T ss_pred HHHhh
Confidence 98764
No 57
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=7.5e-24 Score=210.80 Aligned_cols=163 Identities=33% Similarity=0.452 Sum_probs=129.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc------------------ccccCceEEeeeEEEEE--ecCCeeEEEeeCCCc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV------------------AKEAGGITQHMGAFVVG--MSTGASITFLDTPGH 247 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~------------------~~~~~gtT~di~~~~v~--~~~g~~v~liDTpG~ 247 (708)
+-++|+++||+|+|||||+++|+..... .....++|.+.....+. . .+..++|+|||||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence 3468999999999999999999754421 12336788888777777 5 8999999999999
Q ss_pred chhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccC--C
Q 005218 248 AAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWG--G 325 (708)
Q Consensus 248 ~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~--~ 325 (708)
.+|...+.+++..+|++|+|+|+.+|...++.+++..+...++|+|+|+||+|+......+..+++.........+. .
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEE 160 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTS
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccc
Confidence 99999999999999999999999999999999999999999999999999999973322333333321111111222 2
Q ss_pred cceEEEEeeecCCCchhHHHHHHHHH
Q 005218 326 KVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 326 ~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
.+|++++||++|.|+++|++.|.+.+
T Consensus 161 ~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 161 IVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhC
Confidence 57999999999999999999998753
No 58
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.88 E-value=4.4e-22 Score=235.31 Aligned_cols=254 Identities=26% Similarity=0.313 Sum_probs=176.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc---------------cc-ccccCceEEeeeEEE----EEecCCeeEEEeeCCCc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS---------------LV-AKEAGGITQHMGAFV----VGMSTGASITFLDTPGH 247 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~---------------~~-~~~~~gtT~di~~~~----v~~~~g~~v~liDTpG~ 247 (708)
+.++|+++||+|||||||+++|+... +. .....|+|.+..... +.+ +++.++|||||||
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~ 96 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGH 96 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCc
Confidence 45799999999999999999997531 11 112256776644332 333 6789999999999
Q ss_pred chhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc--------ccc
Q 005218 248 AAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE--------GLE 319 (708)
Q Consensus 248 ~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~--------~~~ 319 (708)
.+|......+++.+|++|+|+|+.+|+..++..++..+...++|.++++||+|+...+.......+... ...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~ 176 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKL 176 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhh
Confidence 999988889999999999999999999999999999888889999999999999754332221111110 000
Q ss_pred h-----hc----cC---CcceEEEEeeecCC------------C----------------------chhHHHHHHHHHHH
Q 005218 320 L-----ED----WG---GKVQVVEVSAVKKT------------G----------------------LDDLEVALLLQAEM 353 (708)
Q Consensus 320 ~-----~~----~~---~~~~vi~vSAktg~------------G----------------------I~~L~~~I~~~~~~ 353 (708)
+ +. +. ......+.|++.++ + ++.|++.|...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPs 256 (720)
T TIGR00490 177 IKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPS 256 (720)
T ss_pred hhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCC
Confidence 0 00 00 00112223443331 1 12334444433211
Q ss_pred cc-----------------------cccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEE
Q 005218 354 MN-----------------------LKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAI 408 (708)
Q Consensus 354 ~~-----------------------~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i 408 (708)
+. ...+++.|+.++|+++..+++.|.+++++|.+|+|++||.|++.+. ..+|+.|
T Consensus 257 P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l 336 (720)
T TIGR00490 257 PIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQV 336 (720)
T ss_pred hhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEE
Confidence 10 0113456889999999999999999999999999999999987653 3467776
Q ss_pred ecc---cCCcccccCCCCcEEEeccCCCCCCCCeEEEe
Q 005218 409 RDM---VGKSTDKARPAMPVEIEGLKGLPMAGDDIIVV 443 (708)
Q Consensus 409 ~~~---~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v 443 (708)
... ...+++++.||+.|.|.|+++. ..||++...
T Consensus 337 ~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~ 373 (720)
T TIGR00490 337 GVYMGPERVEVDEIPAGNIVAVIGLKDA-VAGETICTT 373 (720)
T ss_pred EEeccCCccCccEECCCCEEEEECcccc-ccCceeecC
Confidence 544 3468999999999999999876 689998643
No 59
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.7e-21 Score=206.98 Aligned_cols=254 Identities=23% Similarity=0.305 Sum_probs=192.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc----------------------ccccCceEEeeeEEEEEecCCeeEEEeeCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV----------------------AKEAGGITQHMGAFVVGMSTGASITFLDTP 245 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~----------------------~~~~~gtT~di~~~~v~~~~g~~v~liDTp 245 (708)
+-.+.+|+-||++|||||...|+---.+ +...+|+......-.+.+ .++.++|+|||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTP 89 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTP 89 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCC
Confidence 4568999999999999999998531111 122357766666666677 89999999999
Q ss_pred CcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-ccch----
Q 005218 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GLEL---- 320 (708)
Q Consensus 246 G~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~~~---- 320 (708)
||++|+.-+.+.+..+|.+|+|+|+..|+.+||+.++.-++..++|++-++||+|....++-++..++.+. ++..
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999876654444433220 0000
Q ss_pred -------------------------------------------------------------------------hc--cCC
Q 005218 321 -------------------------------------------------------------------------ED--WGG 325 (708)
Q Consensus 321 -------------------------------------------------------------------------~~--~~~ 325 (708)
+. .+.
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~ 249 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGE 249 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCC
Confidence 00 022
Q ss_pred cceEEEEeeecCCCchhHHHHHHHHHHHcccc-------cccCCCcceeEEEEEee---CCCCcEEEEEEEeeEEcCCCE
Q 005218 326 KVQVVEVSAVKKTGLDDLEVALLLQAEMMNLK-------ARVDGPAQAYVVEARLD---KGRGPLTTAIVKAGTLVCGQH 395 (708)
Q Consensus 326 ~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~-------~~~~~p~~~~V~e~~~~---~~~G~v~~~~V~~G~L~~gd~ 395 (708)
-.|+|+-||+++.|++.+++.+...+..+... .+.+..+.++|+++..+ +++..++..+|.+|.+..|+.
T Consensus 250 ~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMk 329 (528)
T COG4108 250 LTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMK 329 (528)
T ss_pred ccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCce
Confidence 36999999999999999999999876544322 12345689999998775 468899999999999999999
Q ss_pred EEEccccceEE-----EEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEe
Q 005218 396 VVVGHEWGRIR-----AIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVV 443 (708)
Q Consensus 396 v~~g~~~~kVr-----~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v 443 (708)
+....+...++ .......+.+.+|.||+.|.|..--.+ ..||+|..=
T Consensus 330 v~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~-~IGDT~t~G 381 (528)
T COG4108 330 VTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTI-QIGDTFTEG 381 (528)
T ss_pred eeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCce-eecceeecC
Confidence 88765433332 222335678899999998877543222 578887644
No 60
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.6e-21 Score=201.17 Aligned_cols=237 Identities=30% Similarity=0.349 Sum_probs=178.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC----------------cccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT----------------SLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~----------------~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
....+|.-+||++||||||.-++..- +......+|+|.......++. ...++--+|+|||.+|
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHADY 130 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchHHH
Confidence 34578999999999999999998431 111234579999877777766 7788999999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCc------chhhhhhhhcccchhcc
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADP------ERVKNQLGAEGLELEDW 323 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~------~~~~~~l~~~~~~~~~~ 323 (708)
...+..+..+-|.+|+|+.++||.++|+++++..++.-+++ +++++||.|+.+... -++++.|.++++ -
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf----~ 206 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF----D 206 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC----C
Confidence 99999999999999999999999999999999999999998 889999999974211 112223333332 2
Q ss_pred CCcceEEEEeeec---CC----C---chhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCC
Q 005218 324 GGKVQVVEVSAVK---KT----G---LDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCG 393 (708)
Q Consensus 324 ~~~~~vi~vSAkt---g~----G---I~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~g 393 (708)
+.+.|++.-||+. |. | |.+|++++... .+.+..+.+.||...|-+++...|+|+|++|++.+|+|+.|
T Consensus 207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsy--ip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG 284 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSY--IPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKG 284 (449)
T ss_pred CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhcc--CCCcccccCCCceeehhheeeecCCceEEEEEEeecccccC
Confidence 5578999988764 32 2 33444444332 22333456789999999999999999999999999999999
Q ss_pred CEEEEccccceEE----EEecccCCcccccCCCCcEEEe--ccC
Q 005218 394 QHVVVGHEWGRIR----AIRDMVGKSTDKARPAMPVEIE--GLK 431 (708)
Q Consensus 394 d~v~~g~~~~kVr----~i~~~~~~~v~~a~~g~~V~i~--gl~ 431 (708)
+.+-+......++ .++ ..++.+++|.+|+.+.+. |++
T Consensus 285 ~e~eivG~~~~lkttvtgie-mF~K~ld~a~AGDn~G~LlRGik 327 (449)
T KOG0460|consen 285 DEVEIVGHNKTLKTTVTGIE-MFRKSLDEAQAGDNLGALLRGIK 327 (449)
T ss_pred CEEEEeccCcceeeEeehHH-HHHHHHHhcccccceehhhhcCC
Confidence 9997755333333 333 456788999999987643 554
No 61
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=1.6e-21 Score=187.48 Aligned_cols=156 Identities=33% Similarity=0.481 Sum_probs=117.4
Q ss_pred EEEEEecCCCCchHHHHHhhcCcc---cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSL---VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~---~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
+|+++|++|+|||||+|+|.+... .....+++|.+.....+.+..+..+.+|||||++.|......+++.+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 689999999999999999986432 22345688888877777663378999999999999987777788999999999
Q ss_pred EEccCCCChhHHHHHHHhhhcCC-CEEEEEeCCCCCCCCc-chhhhhhhhcccchhcc-CCcceEEEEeeecCCCchhHH
Q 005218 268 VAADDGVMPQTLEAIAHANAANV-PIVVAINKCDKPAADP-ERVKNQLGAEGLELEDW-GGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 268 vDa~~g~~~q~~~~l~~l~~~~~-piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~-~~~~~vi~vSAktg~GI~~L~ 344 (708)
+|+++++..++.+.+..+...+. |+++++||+|+..... ......+.+. +... ....+++++||++|.|+++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~v~~l~ 158 (164)
T cd04171 82 VAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIREL---LAGTFLADAPIFPVSAVTGEGIEELK 158 (164)
T ss_pred EECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHH---HHhcCcCCCcEEEEeCCCCcCHHHHH
Confidence 99998877787777666555565 8999999999964210 1111222111 1111 124689999999999999999
Q ss_pred HHHHH
Q 005218 345 VALLL 349 (708)
Q Consensus 345 ~~I~~ 349 (708)
+.|..
T Consensus 159 ~~l~~ 163 (164)
T cd04171 159 EYLDE 163 (164)
T ss_pred HHHhh
Confidence 88754
No 62
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.87 E-value=2.5e-21 Score=202.27 Aligned_cols=241 Identities=31% Similarity=0.427 Sum_probs=183.1
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcCccccc--------------ccCceEEeeeEEEEEecCC--------------
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAK--------------EAGGITQHMGAFVVGMSTG-------------- 236 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~--------------~~~gtT~di~~~~v~~~~g-------------- 236 (708)
..+....|+.+||+|+|||||+..|........ -..|.|-++....+.+++|
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 345667899999999999999999965433211 1246666666655555322
Q ss_pred --------eeEEEeeCCCcchhhhhhhccc--ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc
Q 005218 237 --------ASITFLDTPGHAAFSAMRKRGA--AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP 306 (708)
Q Consensus 237 --------~~v~liDTpG~~~f~~~~~~~~--~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~ 306 (708)
.-+.|+||-||+.+.....+++ ...|..+|++.|++|++..+.+++..+...+.|+|++++|+|+...+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr 272 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDR 272 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHH
Confidence 3588999999999988777776 789999999999999999999999999999999999999999964321
Q ss_pred -chhhhhhhhc-------ccch------------hccC-CcceEEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcc
Q 005218 307 -ERVKNQLGAE-------GLEL------------EDWG-GKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQ 365 (708)
Q Consensus 307 -~~~~~~l~~~-------~~~~------------~~~~-~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~ 365 (708)
..+.+++... .+.. -+.+ .-+|+|.+|+.||+|++-|.+.+..+-... .....+||.
T Consensus 273 ~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~rr--~~~d~g~fl 350 (527)
T COG5258 273 FQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKRR--RWDDEGPFL 350 (527)
T ss_pred HHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCccc--ccCCCCCeE
Confidence 1111221110 0000 0112 257999999999999998887766532111 335678999
Q ss_pred eeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc-cc-----eEEEEecccCCcccccCCCCcEEEe
Q 005218 366 AYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE-WG-----RIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 366 ~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~-~~-----kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
++|.+++...+.|+++.|.|.+|.++.||++++||. .| +|++|+ .+.-.+.+|.||..+.+.
T Consensus 351 mYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIe-mh~~rvdsa~aG~iig~A 418 (527)
T COG5258 351 MYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIE-MHHYRVDSAKAGSIIGIA 418 (527)
T ss_pred EEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEE-EeeEEeccccCCcEEEEE
Confidence 999999999999999999999999999999999983 34 478887 677789999999988764
No 63
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=1.1e-21 Score=212.29 Aligned_cols=152 Identities=22% Similarity=0.330 Sum_probs=128.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh-----h----hhhcccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS-----A----MRKRGAA 259 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~-----~----~~~~~~~ 259 (708)
+.|+|+|+||||||||+|+|++++.++ ++.||+|||-.+....+ .+..+.++||+|.+... . .....+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 789999999999999999999999887 89999999999888888 88899999999976432 2 2224678
Q ss_pred cccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 260 ~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
.||++|||+|+..|+++++.+....++..++|+|+|+||+|-. ..+....++...|+ -.++++||.+|.|
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~--~~e~~~~efyslG~--------g~~~~ISA~Hg~G 152 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL--KAEELAYEFYSLGF--------GEPVPISAEHGRG 152 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc--hhhhhHHHHHhcCC--------CCceEeehhhccC
Confidence 9999999999999999999999999998889999999999975 22333333433332 2689999999999
Q ss_pred chhHHHHHHHHHH
Q 005218 340 LDDLEVALLLQAE 352 (708)
Q Consensus 340 I~~L~~~I~~~~~ 352 (708)
+.+|++.+...+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999998653
No 64
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.6e-21 Score=197.58 Aligned_cols=238 Identities=25% Similarity=0.335 Sum_probs=187.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC-------cccccccCceEEeeeEEEEEecC--------CeeEEEeeCCCcchhhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT-------SLVAKEAGGITQHMGAFVVGMST--------GASITFLDTPGHAAFSA 252 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~-------~~~~~~~~gtT~di~~~~v~~~~--------g~~v~liDTpG~~~f~~ 252 (708)
-..++.++||+++|||||..+|..- .-+.+..+|+|.|.+...+.... ...++|+|+|||.....
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 3478999999999999999999532 12335568999998877665432 34569999999998888
Q ss_pred hhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcch--hhhhhhh--cccchhccCCcce
Q 005218 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER--VKNQLGA--EGLELEDWGGKVQ 328 (708)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~--~~~~l~~--~~~~~~~~~~~~~ 328 (708)
....+....|+.++|+|+..|.+.|+.+++-.....-...+||+||+|....+... +.+.-.. ..+....+.++.|
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~P 165 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSP 165 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCc
Confidence 77788899999999999999999999998876655556789999999985432111 1111111 1222335667899
Q ss_pred EEEEeeecC----CCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcc--cc
Q 005218 329 VVEVSAVKK----TGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EW 402 (708)
Q Consensus 329 vi~vSAktg----~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~--~~ 402 (708)
++++||+.| +++.+|.+.|..++ ..+..++.+|+...|...+..+|.|+|.+|.+.+|.++.|+.|.+-. ..
T Consensus 166 I~~vsa~~G~~~~~~i~eL~e~l~s~i--f~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~ 243 (522)
T KOG0461|consen 166 IVEVSAADGYFKEEMIQELKEALESRI--FEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEK 243 (522)
T ss_pred eeEEecCCCccchhHHHHHHHHHHHhh--cCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchh
Confidence 999999999 88999999888764 44566788999999999999999999999999999999999998853 55
Q ss_pred ceEEEEecccCCcccccCCCCcEEEe
Q 005218 403 GRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 403 ~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
.+|++|+ ....++.+|.+|+...+.
T Consensus 244 rkVKslq-mf~~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 244 RKVKSLQ-MFKQRVTSAAAGDRAGFC 268 (522)
T ss_pred hhhhhHH-HHhhhhhhhhcccceeee
Confidence 6899987 556788889999887654
No 65
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.86 E-value=2e-21 Score=211.10 Aligned_cols=211 Identities=21% Similarity=0.249 Sum_probs=142.8
Q ss_pred hhHHHHHHHHhccCHHHHHHHHHhcccccccCCCCCChhHHHH----HHHH---hCCceeee-cCCCCCCCCC---CCCE
Q 005218 123 GMAVVELAKQSGASITTLQDILVNVGEKVDSEFEPLSIDVAEL----VVME---LGFNVRRI-HSSEGTEILP---RPPV 191 (708)
Q Consensus 123 ~~a~~~la~~l~~~~~~l~~~L~~~~~~~e~~~~~~~~~~~~~----~~~~---~~~~~~~l-~~~~~~~~~~---~~~~ 191 (708)
++++++|.+.+.+....++. |..+++.++. . ..+++..+. +... +...+..+ .....+...+ ..++
T Consensus 115 qv~la~l~~~l~r~~~~~~~-l~~~~~~i~~-~-g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ 191 (351)
T TIGR03156 115 QVELAQLKYLLPRLVGGWTH-LSRQGGGIGT-R-GPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPT 191 (351)
T ss_pred HHHHHhccchhhhhhhhHHH-HHhhcCCCCC-C-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcE
Confidence 67788999999999988877 7777666553 1 112211111 1111 11111111 1111222222 4589
Q ss_pred EEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCc-c--------hhhhhhhccccccc
Q 005218 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH-A--------AFSAMRKRGAAVTD 262 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~-~--------~f~~~~~~~~~~aD 262 (708)
|+++|.||||||||+|+|++.....++.+++|+|.....+.++++.++.||||||. + .|...+ ..+..||
T Consensus 192 ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~AD 270 (351)
T TIGR03156 192 VALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREAD 270 (351)
T ss_pred EEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCC
Confidence 99999999999999999999887667888999999888888867889999999997 2 232222 2478999
Q ss_pred EEEEEEEccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 263 IVVLVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 263 ivllVvDa~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
++++|+|++++...+.. ..+..+...++|+++|+||+|+... ..+. ... . ...+++++||++|.
T Consensus 271 lil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~v~-~~~-------~--~~~~~i~iSAktg~ 338 (351)
T TIGR03156 271 LLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PRIE-RLE-------E--GYPEAVFVSAKTGE 338 (351)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--HhHH-HHH-------h--CCCCEEEEEccCCC
Confidence 99999999986554433 3333333347899999999999642 1111 110 0 11368999999999
Q ss_pred CchhHHHHHHH
Q 005218 339 GLDDLEVALLL 349 (708)
Q Consensus 339 GI~~L~~~I~~ 349 (708)
|+++|+++|..
T Consensus 339 GI~eL~~~I~~ 349 (351)
T TIGR03156 339 GLDLLLEAIAE 349 (351)
T ss_pred CHHHHHHHHHh
Confidence 99999999865
No 66
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=4.1e-21 Score=188.36 Aligned_cols=156 Identities=33% Similarity=0.439 Sum_probs=115.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccc---------------cccCceEEeeeEEEEEe----cCCeeEEEeeCCCcchh
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVA---------------KEAGGITQHMGAFVVGM----STGASITFLDTPGHAAF 250 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~---------------~~~~gtT~di~~~~v~~----~~g~~v~liDTpG~~~f 250 (708)
.+|+++|++|||||||+++|++..... ....|+|.+.....+.+ ..+..+.||||||+++|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 479999999999999999998743211 11235565544333322 25678999999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEE
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVV 330 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 330 (708)
..++..+++.+|++|+|+|++++...++...+..+...++|+++|+||+|+.+.......+.+.+.. .. ...+++
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~----~~-~~~~~~ 155 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVL----GL-DPSEAI 155 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHh----CC-CcccEE
Confidence 9999999999999999999999888888887777767789999999999996433222222222110 00 112589
Q ss_pred EEeeecCCCchhHHHHHHHH
Q 005218 331 EVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 331 ~vSAktg~GI~~L~~~I~~~ 350 (708)
++||++|.|+++|+++|...
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred EeeccCCCCHHHHHHHHHhh
Confidence 99999999999999999764
No 67
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.85 E-value=5.3e-21 Score=191.59 Aligned_cols=150 Identities=35% Similarity=0.399 Sum_probs=116.3
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcc----------------cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM 253 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~----------------~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~ 253 (708)
++|+++||+|+|||||+++|++... .....+|+|.+.....+.. ++..++|+|||||.+|...
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHHHHHH
Confidence 6899999999999999999975310 1123579999987777766 7889999999999999988
Q ss_pred hhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcc---hhhhhhhhcccchhccCCcceE
Q 005218 254 RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPE---RVKNQLGAEGLELEDWGGKVQV 329 (708)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~---~~~~~l~~~~~~~~~~~~~~~v 329 (708)
...++..+|++++|+|+..++.+++.+++..+...++| +|+++||+|+.. +.+ .+.+++......+.....++|+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~~~~~~~~~~i~~~l~~~g~~~~~v~i 160 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD-DEELLELVEMEVRELLSKYGFDGDNTPI 160 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-cHHHHHHHHHHHHHHHHHhcccccCCeE
Confidence 88899999999999999999999999999999999998 789999999963 211 1112222211111001135899
Q ss_pred EEEeeecCCCch
Q 005218 330 VEVSAVKKTGLD 341 (708)
Q Consensus 330 i~vSAktg~GI~ 341 (708)
+++||++|.|+.
T Consensus 161 ipiSa~~g~n~~ 172 (195)
T cd01884 161 VRGSALKALEGD 172 (195)
T ss_pred EEeeCccccCCC
Confidence 999999999863
No 68
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=1e-21 Score=188.46 Aligned_cols=147 Identities=22% Similarity=0.356 Sum_probs=111.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh------hhhccc--ccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA------MRKRGA--AVT 261 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~------~~~~~~--~~a 261 (708)
++|+++|.||+|||||+|+|++.+...+..||+|.+.....+.+ ++..+.|+||||...+.. ....++ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 47999999999999999999999988899999999998888888 889999999999543321 112233 689
Q ss_pred cEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchh-hhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|++++|+|+++ .++.+....++...++|+++|+||+|+.......+ .+.+.+ .+ .+|++++||++|.|+
T Consensus 80 D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~------~L--g~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 80 DLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSE------RL--GVPVIPVSARTGEGI 149 (156)
T ss_dssp SEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHH------HH--TS-EEEEBTTTTBTH
T ss_pred CEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHH------Hh--CCCEEEEEeCCCcCH
Confidence 99999999987 46677778888899999999999999853221111 111111 11 369999999999999
Q ss_pred hhHHHHH
Q 005218 341 DDLEVAL 347 (708)
Q Consensus 341 ~~L~~~I 347 (708)
++|+++|
T Consensus 150 ~~L~~~I 156 (156)
T PF02421_consen 150 DELKDAI 156 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999875
No 69
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=4.6e-21 Score=197.46 Aligned_cols=158 Identities=22% Similarity=0.301 Sum_probs=125.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcch--------hhhhhhccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAA--------FSAMRKRGA 258 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~--------f~~~~~~~~ 258 (708)
+...|+|+|+||+|||||+|+|++...++ ++.+.|||+.....+.. +..++.|+||||... .......++
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45679999999999999999999999987 88999999988887776 789999999999321 222334568
Q ss_pred ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 259 ~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
..+|+++||+|+++++.+.+...+..++..+.|+|+++||+|+...... +....... ........++++||++|.
T Consensus 84 ~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~-l~~~~~~~----~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV-LLKLIAFL----KKLLPFKEIVPISALKGD 158 (298)
T ss_pred ccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH-HHHHHHHH----HhhCCcceEEEeeccccC
Confidence 9999999999999999888888888888877899999999998653321 11111111 111223479999999999
Q ss_pred CchhHHHHHHHHH
Q 005218 339 GLDDLEVALLLQA 351 (708)
Q Consensus 339 GI~~L~~~I~~~~ 351 (708)
|++.|.+.|...+
T Consensus 159 n~~~L~~~i~~~L 171 (298)
T COG1159 159 NVDTLLEIIKEYL 171 (298)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999988754
No 70
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=6.5e-21 Score=190.16 Aligned_cols=162 Identities=30% Similarity=0.363 Sum_probs=119.5
Q ss_pred CEEEEEecCCCCchHHHHHhhcC-------cccccccCceEEeeeEEEEEec-------------CCeeEEEeeCCCcch
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQT-------SLVAKEAGGITQHMGAFVVGMS-------------TGASITFLDTPGHAA 249 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~-------~~~~~~~~gtT~di~~~~v~~~-------------~g~~v~liDTpG~~~ 249 (708)
++|+++|++|+|||||+++|+.. .......+|+|.+.....+.+. .++.++|||||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999863 2223456788988776666552 278999999999988
Q ss_pred hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhhhhc-ccchhcc-CCc
Q 005218 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAE-GLELEDW-GGK 326 (708)
Q Consensus 250 f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~-~~~~~~~-~~~ 326 (708)
+......++..+|++++|+|++++...++.+.+..+...+.|+++++||+|+..... +...+.+.+. ...+... ...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN 160 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 766666677889999999999998888877766666666889999999999964221 1112222111 0001110 124
Q ss_pred ceEEEEeeecCCCchhHHHHHHHHH
Q 005218 327 VQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 327 ~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
++++++||++|.|+++|+++|..+.
T Consensus 161 ~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 161 SPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CCEEEEeccCCCCHHHHHHHHHhcc
Confidence 6899999999999999999998864
No 71
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.85 E-value=7.3e-20 Score=219.52 Aligned_cols=115 Identities=29% Similarity=0.400 Sum_probs=96.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc----------------cccCceEEeeeEEEEEec---------------CC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA----------------KEAGGITQHMGAFVVGMS---------------TG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~----------------~~~~gtT~di~~~~v~~~---------------~g 236 (708)
+-++|+|+||+|||||||+++|+.....+ ....|+|.+.....+.+. ++
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 45689999999999999999997544221 122466666444444431 36
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~ 302 (708)
+.++|+|||||.+|...+..+++.+|++|+|+|+.+|+..|+..+|+++...++|+|+++||+|+.
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 789999999999999999999999999999999999999999999999999999999999999997
No 72
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.84 E-value=7.8e-21 Score=192.37 Aligned_cols=152 Identities=24% Similarity=0.282 Sum_probs=113.7
Q ss_pred EEEEEecCCCCchHHHHHhhcCccccc-------------------------------ccCceEEeeeEEEEEecCCeeE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAK-------------------------------EAGGITQHMGAFVVGMSTGASI 239 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~-------------------------------~~~gtT~di~~~~v~~~~g~~v 239 (708)
+|+|+||+|+|||||+++|+.....+. ..+|+|++.....+.+ ++.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 589999999999999999976443221 1278999988888877 88999
Q ss_pred EEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcchhhhhhhhccc
Q 005218 240 TFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLGAEGL 318 (708)
Q Consensus 240 ~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~~~~~ 318 (708)
.|||||||++|...+..++..+|++|+|+|++++...++...+..+...+.| +|+|+||+|+...+.........+...
T Consensus 80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~ 159 (208)
T cd04166 80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLA 159 (208)
T ss_pred EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence 9999999999987777788999999999999999888888777777666655 788999999975432221111111111
Q ss_pred chhccC-CcceEEEEeeecCCCchhH
Q 005218 319 ELEDWG-GKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 319 ~~~~~~-~~~~vi~vSAktg~GI~~L 343 (708)
....++ ...+++++||++|.|+++.
T Consensus 160 ~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 160 FAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHcCCCCceEEEEeCCCCCCCccC
Confidence 111121 1357999999999999754
No 73
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.84 E-value=1.2e-20 Score=163.07 Aligned_cols=84 Identities=49% Similarity=0.869 Sum_probs=80.5
Q ss_pred eceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc
Q 005218 596 GEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW 675 (708)
Q Consensus 596 g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~ 675 (708)
|+|+|.++|++++.+ +||||+|.+|.+++|++++++|+++++|+|+|.||++++++|+++.+|+||||.|++|
T Consensus 1 g~~~V~~vf~~~~~g-------~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~ 73 (84)
T cd03692 1 GEAEVRAVFKISKVG-------NIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENF 73 (84)
T ss_pred CEEEEEEEEECCCCc-------EEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCc
Confidence 789999999987544 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEE
Q 005218 676 HDFQVGDIIQC 686 (708)
Q Consensus 676 ~~~~~gD~ie~ 686 (708)
+||++||+|||
T Consensus 74 ~d~~~Gdvi~~ 84 (84)
T cd03692 74 NDIKVGDIIEA 84 (84)
T ss_pred ccCCCCCEEEC
Confidence 99999999996
No 74
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=6e-20 Score=201.55 Aligned_cols=302 Identities=24% Similarity=0.225 Sum_probs=225.5
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCccc------------------ccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLV------------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~------------------~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
+.+-.+|.|+.|-++|||||.++.+..... .....|+|....+..+.| ..+++++||||||
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGH 114 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCc
Confidence 346678999999999999999998643211 123468898888888888 7999999999999
Q ss_pred chhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhccc---------
Q 005218 248 AAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGL--------- 318 (708)
Q Consensus 248 ~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~--------- 318 (708)
-+|....++.++..|.+++|+|+..|++.|+...|++++..++|.|.++||+|..++++-+..+++.....
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiP 194 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIP 194 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEcc
Confidence 99999999999999999999999999999999999999999999999999999988765443333221000
Q ss_pred ---------------------------------------------------------------chhc-------------
Q 005218 319 ---------------------------------------------------------------ELED------------- 322 (708)
Q Consensus 319 ---------------------------------------------------------------~~~~------------- 322 (708)
.+++
T Consensus 195 ig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIR 274 (721)
T KOG0465|consen 195 IGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIR 274 (721)
T ss_pred ccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHH
Confidence 0000
Q ss_pred ----cCCcceEEEEeeecCCCchhHHHHHHHHHHHcc------cc------------cccCC-CcceeEEEEEeeCCCCc
Q 005218 323 ----WGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMN------LK------------ARVDG-PAQAYVVEARLDKGRGP 379 (708)
Q Consensus 323 ----~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~------~~------------~~~~~-p~~~~V~e~~~~~~~G~ 379 (708)
....+|++.-||+.+.|++-|++++...+..+. .. ...+. |+.+..++....+. |.
T Consensus 275 r~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-Gq 353 (721)
T KOG0465|consen 275 RATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-GQ 353 (721)
T ss_pred HHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc-cc
Confidence 013479999999999999999999987643110 00 01222 88888888888877 99
Q ss_pred EEEEEEEeeEEcCCCEEEEccccceEE-----EEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhh
Q 005218 380 LTTAIVKAGTLVCGQHVVVGHEWGRIR-----AIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSS 454 (708)
Q Consensus 380 v~~~~V~~G~L~~gd~v~~g~~~~kVr-----~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~ 454 (708)
....+|.+|+|+.||+|+...+..||| .|+....+.|+++.+|+.+.+.|++. ..||+|.--.+-.
T Consensus 354 LTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGidc--asGDTftd~~~~~------- 424 (721)
T KOG0465|consen 354 LTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGIDC--ASGDTFTDKQNLA------- 424 (721)
T ss_pred eEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecccc--ccCceeccCcccc-------
Confidence 999999999999999999988776665 45555668999999999999999965 4899987332100
Q ss_pred hhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEE
Q 005218 455 GRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNV 519 (708)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~I 519 (708)
+ ..+....-.+.+.+-||.-+.-..++...+|..+..++..+.+
T Consensus 425 ----------~-----------~m~si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv 468 (721)
T KOG0465|consen 425 ----------L-----------SMESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRV 468 (721)
T ss_pred ----------c-----------eeeeeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEE
Confidence 0 0000011134566667777777777777777777666544433
No 75
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=1.9e-20 Score=187.12 Aligned_cols=156 Identities=33% Similarity=0.408 Sum_probs=115.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC--ccccc--------------ccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT--SLVAK--------------EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~--~~~~~--------------~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~ 252 (708)
..+|+++|++|+|||||+++|++. .+... ...|+|.+.....+.. ++..+.||||||+++|..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~ 80 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADFGG 80 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHHHH
Confidence 358999999999999999999863 22211 1256676666666666 789999999999999999
Q ss_pred hhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccch--hccCCcceEE
Q 005218 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLEL--EDWGGKVQVV 330 (708)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~--~~~~~~~~vi 330 (708)
++..+++.+|++++|+|++++..+++...+..+...++|+++|+||+|+...........+......+ ......++++
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 160 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEE
Confidence 99999999999999999999877777777777767789999999999997544333333322211011 0011246899
Q ss_pred EEeeecCCCchhHHH
Q 005218 331 EVSAVKKTGLDDLEV 345 (708)
Q Consensus 331 ~vSAktg~GI~~L~~ 345 (708)
++||++|.|+.++.+
T Consensus 161 ~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 161 YASAKNGWASLNLED 175 (194)
T ss_pred Eeehhcccccccccc
Confidence 999999999866533
No 76
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=2.2e-20 Score=196.64 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=113.3
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchh--------hhhhhcccccc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF--------SAMRKRGAAVT 261 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f--------~~~~~~~~~~a 261 (708)
+|+++|+||||||||+|+|++..+.. +..++||++........ ++.++.||||||+... ......++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999988764 78889999866554444 6778999999996432 11223567899
Q ss_pred cEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|++++|+|+++....+ ...+..+...+.|+++|+||+|+.. .......+... .......+++++||++|.|++
T Consensus 81 Dvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~----~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKY----AILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHH----HhhcCCCceEEEecCCCCCHH
Confidence 9999999999865443 4455566667899999999999963 22222222111 111122379999999999999
Q ss_pred hHHHHHHHHH
Q 005218 342 DLEVALLLQA 351 (708)
Q Consensus 342 ~L~~~I~~~~ 351 (708)
+|+++|...+
T Consensus 154 ~L~~~l~~~l 163 (270)
T TIGR00436 154 FLAAFIEVHL 163 (270)
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 77
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=2.9e-20 Score=208.24 Aligned_cols=163 Identities=25% Similarity=0.329 Sum_probs=128.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh----------hh-h
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA----------MR-K 255 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~----------~~-~ 255 (708)
..++|+++|++|+|||||+|+|++.+.. .++.+|+|++.....+.. ++..+.+|||||++.+.. ++ .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 4579999999999999999999987765 478899999988777777 788999999999754432 12 2
Q ss_pred cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcc---hhhhhhhhcccchhccCCcceEEEE
Q 005218 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE---RVKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~---~~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
.+++.+|++|+|+|++++.+.++...+..+...++|+|+|+||+|+.. +.+ .+...+... + .+...++++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~---~-~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK-DEKTREEFKKELRRK---L-PFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC-CHHHHHHHHHHHHHh---c-ccCCCCceEEE
Confidence 467899999999999999999999999888888999999999999972 211 122222211 1 11234789999
Q ss_pred eeecCCCchhHHHHHHHHHHHccc
Q 005218 333 SAVKKTGLDDLEVALLLQAEMMNL 356 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~~~~~~~~ 356 (708)
||++|.|++++++++...++....
T Consensus 325 SA~~g~~v~~l~~~i~~~~~~~~~ 348 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYENANR 348 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999887765443
No 78
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.83 E-value=3.9e-20 Score=186.37 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=116.0
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.|+++|..|||||||++++....+.....++++.++....+.+ ++ ..+.+|||||++.|..++..+++.||++|+||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998887777777777776666666 44 77899999999999999999999999999999
Q ss_pred EccCCCChhHHHH----HHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 269 AADDGVMPQTLEA----IAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 269 Da~~g~~~q~~~~----l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
|+++..+.+.... +......+.|+++|+||+|+.... .+.... +..+.......+++++||++|.|++++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~--~v~~~~---~~~~a~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR--EISRQQ---GEKFAQQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc--ccCHHH---HHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 9998544333332 222223478999999999995321 111111 1111111113579999999999999999
Q ss_pred HHHHHHH
Q 005218 345 VALLLQA 351 (708)
Q Consensus 345 ~~I~~~~ 351 (708)
++|....
T Consensus 156 ~~l~~~~ 162 (202)
T cd04120 156 LKLVDDI 162 (202)
T ss_pred HHHHHHH
Confidence 9998754
No 79
>PRK15494 era GTPase Era; Provisional
Probab=99.83 E-value=3.2e-20 Score=201.31 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=118.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcch-hhhh-------hhcc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-FSAM-------RKRG 257 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~-f~~~-------~~~~ 257 (708)
++..+|+++|+||||||||+|+|++..+.. ++.+++|++.....+.. ++.++.||||||+.. +..+ ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 355699999999999999999999988765 67788999877766776 788999999999743 2211 1234
Q ss_pred cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecC
Q 005218 258 AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg 337 (708)
+..||++++|+|+.++....+...+..+...+.|.|+|+||+|+.+.......+.+. ......+++++||++|
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~-------~~~~~~~i~~iSAktg 201 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLT-------ENHPDSLLFPISALSG 201 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHH-------hcCCCcEEEEEeccCc
Confidence 789999999999988766666666666666778989999999996432111212211 1122357999999999
Q ss_pred CCchhHHHHHHHHHH
Q 005218 338 TGLDDLEVALLLQAE 352 (708)
Q Consensus 338 ~GI~~L~~~I~~~~~ 352 (708)
.|+++|+++|...+.
T Consensus 202 ~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 202 KNIDGLLEYITSKAK 216 (339)
T ss_pred cCHHHHHHHHHHhCC
Confidence 999999999987543
No 80
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=3.2e-20 Score=210.05 Aligned_cols=165 Identities=22% Similarity=0.313 Sum_probs=128.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcc----------hhhhhhh-
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHA----------AFSAMRK- 255 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~----------~f~~~~~- 255 (708)
..++|+++|+||||||||+|+|++..+. .++.+|+|+|.....+.+ ++..+.||||||++ .|..++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-CCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 5689999999999999999999988764 478899999988777777 88899999999953 3333332
Q ss_pred cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcc-hhhhhhhhcccchhccCCcceEEEEee
Q 005218 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE-RVKNQLGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~vi~vSA 334 (708)
.+++.||++++|+|++++...++...+..+...++|+|+|+||+|+.+.... .....+... +. .....|++++||
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~---l~-~~~~~~~~~~SA 364 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRE---LA-QVPWAPRVNISA 364 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHh---cc-cCCCCCEEEEEC
Confidence 3578999999999999999999998888888889999999999999642211 111122111 11 112368999999
Q ss_pred ecCCCchhHHHHHHHHHHHcccc
Q 005218 335 VKKTGLDDLEVALLLQAEMMNLK 357 (708)
Q Consensus 335 ktg~GI~~L~~~I~~~~~~~~~~ 357 (708)
++|.|+++|++.+...++....+
T Consensus 365 k~g~gv~~lf~~i~~~~~~~~~~ 387 (472)
T PRK03003 365 KTGRAVDKLVPALETALESWDTR 387 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHhccc
Confidence 99999999999999877655444
No 81
>PTZ00416 elongation factor 2; Provisional
Probab=99.83 E-value=2.7e-19 Score=214.27 Aligned_cols=115 Identities=30% Similarity=0.405 Sum_probs=96.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc----------------cccCceEEeeeEEEEEec---------CCeeEEEe
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA----------------KEAGGITQHMGAFVVGMS---------TGASITFL 242 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~----------------~~~~gtT~di~~~~v~~~---------~g~~v~li 242 (708)
+.++|+|+||+|+|||||+++|+.....+ ....|+|.+.....+.+. .++.++|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 45699999999999999999998643211 123466766544444442 26789999
Q ss_pred eCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC
Q 005218 243 DTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 243 DTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~ 302 (708)
|||||.+|......+++.+|++|+|+|+.+|+..|+..+|+.+...++|+|+++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 999999999999999999999999999999999999999999999999999999999997
No 82
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=6.6e-20 Score=177.68 Aligned_cols=155 Identities=15% Similarity=0.249 Sum_probs=112.4
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.++|+++|++|+|||||+++|....+.....+..+.++....+.+ ++ ..+.||||||++.|..++...++.+|++++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 378999999999999999999987776555555555555555555 44 578999999999999888888999999999
Q ss_pred EEEccCCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 267 VVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 267 VvDa~~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+|+++....+ +...+......++|+++|+||+|+........ ..... +....+..+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~----~~~~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLF-EEACT----LAEKNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCH-HHHHH----HHHHcCCcEEEEEECCCCCCHHH
Confidence 99998854332 33333333345789999999999964322111 11111 11111224689999999999999
Q ss_pred HHHHHHH
Q 005218 343 LEVALLL 349 (708)
Q Consensus 343 L~~~I~~ 349 (708)
+++.|.+
T Consensus 157 ~~~~l~~ 163 (165)
T cd01864 157 AFLLMAT 163 (165)
T ss_pred HHHHHHH
Confidence 9999875
No 83
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=4.7e-20 Score=175.76 Aligned_cols=147 Identities=20% Similarity=0.303 Sum_probs=115.0
Q ss_pred EEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh--------hhhcccccccE
Q 005218 193 TVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA--------MRKRGAAVTDI 263 (708)
Q Consensus 193 ~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~--------~~~~~~~~aDi 263 (708)
+++|++|+|||||+|+|.+.... .+..+++|++........ .+..+.+|||||+..+.. .....++.+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 58999999999999999987643 356778898887777776 789999999999887543 33356788999
Q ss_pred EEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 264 VVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 264 vllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+++|+|+.++........+..+...+.|+++|+||+|+...... ...+... +..+++++||++|.|++++
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~--------~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--AAEFYSL--------GFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--HHHHHhc--------CCCCeEEEecccCCCHHHH
Confidence 99999998877777777777777778999999999999653221 1111111 1126899999999999999
Q ss_pred HHHHHHH
Q 005218 344 EVALLLQ 350 (708)
Q Consensus 344 ~~~I~~~ 350 (708)
+++|.++
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9998764
No 84
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.83 E-value=7.7e-20 Score=176.96 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=110.8
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
++|+++|++|+|||||+++|....+.....+.+..++.......+ ....+.+|||||++.|..++..+++.+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 479999999999999999999888766555544444443333332 3467889999999999999999999999999999
Q ss_pred EccCCCChhHHHH-HHHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHH
Q 005218 269 AADDGVMPQTLEA-IAHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (708)
Q Consensus 269 Da~~g~~~q~~~~-l~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~ 345 (708)
|++++...+.... +..+.. .++|+++|+||+|+.... ....... ...+ ..+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~---~~~~--~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV----TQKKFNF---AEKH--NLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH----HHHHHHH---HHHc--CCeEEEEeCCCCCCHHHHHH
Confidence 9987544333332 233322 378999999999984311 1111110 0111 35899999999999999999
Q ss_pred HHHHHH
Q 005218 346 ALLLQA 351 (708)
Q Consensus 346 ~I~~~~ 351 (708)
.+...+
T Consensus 152 ~l~~~~ 157 (161)
T cd04124 152 DAIKLA 157 (161)
T ss_pred HHHHHH
Confidence 998754
No 85
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=7.5e-20 Score=177.33 Aligned_cols=152 Identities=17% Similarity=0.211 Sum_probs=106.3
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh---------hhccccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM---------RKRGAAV 260 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~---------~~~~~~~ 260 (708)
|+|+++|++|+|||||+|+|.+..+.....+++|.++....+.. ++.+++||||||+...... .......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 58999999999999999999998876666677787776666655 6789999999998431110 0011123
Q ss_pred ccEEEEEEEccCCCC---hhHHHHHHHhhhc--CCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeee
Q 005218 261 TDIVVLVVAADDGVM---PQTLEAIAHANAA--NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 261 aDivllVvDa~~g~~---~q~~~~l~~l~~~--~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
+|++++|+|+++... ......+..+... +.|+++|+||+|+.... .... ... .... ...+++++||+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~--~~~~-~~~----~~~~-~~~~~~~~Sa~ 151 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE--DLSE-IEE----EEEL-EGEEVLKISTL 151 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh--hHHH-HHH----hhhh-ccCceEEEEec
Confidence 689999999987432 2223344444433 78999999999996432 1111 111 1111 23589999999
Q ss_pred cCCCchhHHHHHHHH
Q 005218 336 KKTGLDDLEVALLLQ 350 (708)
Q Consensus 336 tg~GI~~L~~~I~~~ 350 (708)
+|.|+++++++|...
T Consensus 152 ~~~gi~~l~~~l~~~ 166 (168)
T cd01897 152 TEEGVDEVKNKACEL 166 (168)
T ss_pred ccCCHHHHHHHHHHH
Confidence 999999999998764
No 86
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.82 E-value=7.6e-20 Score=177.84 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=114.2
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.++|+++|++|+|||||+++|.+..+.....++++.++....+..+ ....+.+|||||++.+..++...++.+|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 4789999999999999999999988877666666666555455552 235789999999999998888889999999999
Q ss_pred EEccCCCChhH----HHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 268 VAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 268 vDa~~g~~~q~----~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+|++++...+. ...+......+.|+++|+||+|+.+..... .+..... ...+ ..+++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS-KEEGEAL---ADEY--GIKFLETSAKANINVEEA 156 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC-HHHHHHH---HHHc--CCEEEEEeCCCCCCHHHH
Confidence 99987433222 222222223578999999999997422111 1111111 1111 358999999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
++.|.+..
T Consensus 157 ~~~i~~~~ 164 (167)
T cd01867 157 FFTLAKDI 164 (167)
T ss_pred HHHHHHHH
Confidence 99998764
No 87
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.82 E-value=1.2e-19 Score=178.52 Aligned_cols=159 Identities=36% Similarity=0.473 Sum_probs=121.4
Q ss_pred EEEEEecCCCCchHHHHHhhcCccccc----------------ccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhh
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAK----------------EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR 254 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~----------------~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~ 254 (708)
+|+++|.+|+|||||+|+|.+...... ..+++|.+.....+.. .+..+.||||||+..+...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~ 79 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDFSSEV 79 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHHHHHH
Confidence 489999999999999999987765432 2346677766666666 67899999999999998888
Q ss_pred hcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCC-Ccchhhhhhhhcccchh---------ccC
Q 005218 255 KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELE---------DWG 324 (708)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~---------~~~ 324 (708)
..+++.+|++++|+|++++...+..+.+..+...+.|+++++||+|+... ........+.+...... ...
T Consensus 80 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (189)
T cd00881 80 IRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNG 159 (189)
T ss_pred HHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccC
Confidence 88899999999999999988888888887777789999999999999752 11111222211110000 012
Q ss_pred CcceEEEEeeecCCCchhHHHHHHHH
Q 005218 325 GKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 325 ~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
...+++++||++|.|+++++++|...
T Consensus 160 ~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 160 LLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred CcceEEEEecccCcCHHHHHHHHHhh
Confidence 35789999999999999999998875
No 88
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=1.7e-19 Score=181.20 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=114.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec--CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~--~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
++|+++|++|+|||||+++|++..+.....++++.++....+.++ ....+.||||||++.|..++..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 479999999999999999999988776667777767655555552 346789999999999999999999999999999
Q ss_pred EEccCCCChhHHHHH----HHh----hhcCCCEEEEEeCCCCCCCC---cchhhhhhhhcccchhccCCcceEEEEeeec
Q 005218 268 VAADDGVMPQTLEAI----AHA----NAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 268 vDa~~g~~~q~~~~l----~~l----~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
+|+++....+....| ... ...++|+++|+||+|+.... .++..+.... .+..+++++||++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~e~Sak~ 152 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE--------NGFIGWFETSAKE 152 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH--------cCCceEEEEeCCC
Confidence 999874333322222 111 12568999999999996311 1111111111 1124799999999
Q ss_pred CCCchhHHHHHHHHHH
Q 005218 337 KTGLDDLEVALLLQAE 352 (708)
Q Consensus 337 g~GI~~L~~~I~~~~~ 352 (708)
|.|+++++++|...+.
T Consensus 153 ~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 153 GINIEEAMRFLVKNIL 168 (201)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
No 89
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.82 E-value=1.5e-19 Score=174.35 Aligned_cols=155 Identities=21% Similarity=0.242 Sum_probs=112.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
++|+++|++|+|||||+++|++..+.....++++.++....+... ....+.||||||++.+..++...++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 479999999999999999999988877777777777655555542 3468899999999999988888999999999999
Q ss_pred EccCCCChh----HHHHHHHhhh-----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 269 AADDGVMPQ----TLEAIAHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 269 Da~~g~~~q----~~~~l~~l~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
|.++....+ +...+..... .+.|+++|+||+|+....... ....... ...+ ..+++++||++|.|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~g 154 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS-EDEGRLW---AESK--GFKYFETSACTGEG 154 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC-HHHHHHH---HHHc--CCeEEEEECCCCCC
Confidence 998743322 2222222221 468999999999996311100 1111110 1111 25799999999999
Q ss_pred chhHHHHHHHH
Q 005218 340 LDDLEVALLLQ 350 (708)
Q Consensus 340 I~~L~~~I~~~ 350 (708)
+++++++|.+.
T Consensus 155 i~~l~~~l~~~ 165 (168)
T cd04119 155 VNEMFQTLFSS 165 (168)
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 90
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.82 E-value=1.2e-19 Score=175.89 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=113.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....++++.++....+... ....+.+|||||++.+..++...++.+|++++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 589999999999999999999988877667777766665555552 2357899999999999998888999999999999
Q ss_pred EccCCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 269 AADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 269 Da~~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
|+++..... +...+......+.|+++|+||+|+........ +...... .. ..++++++||++|.|+++++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~-~~~~~~~---~~--~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDY-SEAQEFA---DE--LGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCH-HHHHHHH---HH--cCCeEEEEECCCCcCHHHHH
Confidence 998743222 22222222224689999999999864321111 1111110 11 13589999999999999999
Q ss_pred HHHHHHH
Q 005218 345 VALLLQA 351 (708)
Q Consensus 345 ~~I~~~~ 351 (708)
+.|.+..
T Consensus 157 ~~i~~~~ 163 (166)
T cd01869 157 MTMAREI 163 (166)
T ss_pred HHHHHHH
Confidence 9998754
No 91
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.82 E-value=1.9e-19 Score=174.64 Aligned_cols=156 Identities=14% Similarity=0.097 Sum_probs=110.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....++++.++....+..+ ....+.+|||||++.+..++...++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 589999999999999999999988866555655555443333331 3367999999999999999999999999999999
Q ss_pred EccCCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 269 AADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 269 Da~~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
|.++....+ |...+......+.|+++|+||+|+........ ...... ...+ ..+++++||++|.|+++|+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSS-ERGRQL---ADQL--GFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCH-HHHHHH---HHHc--CCEEEEEECCCCCCHHHHH
Confidence 998743222 22222222224689999999999964321111 111100 0111 2479999999999999999
Q ss_pred HHHHHHH
Q 005218 345 VALLLQA 351 (708)
Q Consensus 345 ~~I~~~~ 351 (708)
++|...+
T Consensus 156 ~~l~~~~ 162 (165)
T cd01865 156 ERLVDII 162 (165)
T ss_pred HHHHHHH
Confidence 9998753
No 92
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.82 E-value=1.7e-19 Score=173.36 Aligned_cols=153 Identities=15% Similarity=0.154 Sum_probs=115.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.+|+++|++|+|||||+++|++..+...+.++++.++....+.. ++ ..+.+|||||++.+..++...++.+|++++|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999988888889998887777766 44 5689999999999998888899999999999
Q ss_pred EEccCCCChhHHHH-HHHhh-h--cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 268 VAADDGVMPQTLEA-IAHAN-A--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 268 vDa~~g~~~q~~~~-l~~l~-~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+|+++....+.... +..+. . .+.|+++++||+|+...... ...+.... ... ..++++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~-~~~~~~~~---~~~--~~~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 80 YDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQV-STEEGEKK---AKE--LNAMFIETSAKAGHNVKEL 153 (161)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCcc-CHHHHHHH---HHH--hCCEEEEEeCCCCCCHHHH
Confidence 99987543333222 22222 2 25899999999999532211 11111111 011 1368999999999999999
Q ss_pred HHHHHH
Q 005218 344 EVALLL 349 (708)
Q Consensus 344 ~~~I~~ 349 (708)
+++|..
T Consensus 154 ~~~i~~ 159 (161)
T cd01861 154 FRKIAS 159 (161)
T ss_pred HHHHHH
Confidence 999876
No 93
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.82 E-value=1.8e-19 Score=173.47 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=112.3
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec---CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS---TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~---~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.+|+++|++|+|||||+++|.+..+.....++++.++....+.+. ....+.||||||++.|...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 379999999999999999999888776666777777655555442 35689999999999999999999999999999
Q ss_pred EEEccCCCChhHHHHHHH-hh--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 267 VVAADDGVMPQTLEAIAH-AN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l~~-l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|+|+++....+....|.. +. ..++|+++|+||+|+........ ++.... ...+ ..+++++||++|.|++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN-EEAEAL---AKRL--QLPLFRTSVKDDFNVTEL 154 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH-HHHHHH---HHHc--CCeEEEEECCCCCCHHHH
Confidence 999987443333332221 11 24789999999999964221111 111110 0111 248999999999999999
Q ss_pred HHHHHH
Q 005218 344 EVALLL 349 (708)
Q Consensus 344 ~~~I~~ 349 (708)
+++|..
T Consensus 155 ~~~l~~ 160 (162)
T cd04106 155 FEYLAE 160 (162)
T ss_pred HHHHHH
Confidence 998865
No 94
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.4e-19 Score=175.11 Aligned_cols=161 Identities=18% Similarity=0.215 Sum_probs=127.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.-++|.++|..|||||.|+.++....+..+...++..|+....+.+. ...++.+|||+|+++|..+...+++.|+++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 44789999999999999999999999999999999999998888883 33579999999999999999999999999999
Q ss_pred EEEccCCC----ChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcce-EEEEeeecCCCch
Q 005218 267 VVAADDGV----MPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQ-VVEVSAVKKTGLD 341 (708)
Q Consensus 267 VvDa~~g~----~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~-vi~vSAktg~GI~ 341 (708)
|||.++.. ..+|+..+......++|.++|+||+|+.+...-...+ ...+.... ..| ++++|||.+.|++
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~-----a~~fa~~~-~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEE-----AQEFADEL-GIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHH-----HHHHHHhc-CCcceeecccCCccCHH
Confidence 99999843 3455656666666789999999999996432111000 01111111 235 9999999999999
Q ss_pred hHHHHHHHHHHHc
Q 005218 342 DLEVALLLQAEMM 354 (708)
Q Consensus 342 ~L~~~I~~~~~~~ 354 (708)
+.|..|.......
T Consensus 162 ~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 162 DAFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988765443
No 95
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=1.9e-19 Score=202.02 Aligned_cols=164 Identities=27% Similarity=0.348 Sum_probs=127.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh----------hhhh-
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF----------SAMR- 254 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f----------~~~~- 254 (708)
..+++|+++|+||+|||||+|+|++.+.. .++.+|+|++.....+.. ++..+.||||||+... ..++
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 35789999999999999999999987754 478899999988777776 8889999999996432 2222
Q ss_pred hcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEe
Q 005218 255 KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vS 333 (708)
.++++.+|++|+|+|++++...++...+..+...++|+++|+||||+.+.. ...+...+... + .+...+|++++|
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~---l-~~~~~~~i~~~S 325 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRR---L-PFLDYAPIVFIS 325 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHh---c-ccccCCCEEEEe
Confidence 246789999999999999999999999988888899999999999996321 11122222211 1 122357999999
Q ss_pred eecCCCchhHHHHHHHHHHHcc
Q 005218 334 AVKKTGLDDLEVALLLQAEMMN 355 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~~~~~~ 355 (708)
|++|.|++++++.+........
T Consensus 326 A~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999987665443
No 96
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.81 E-value=1.3e-19 Score=173.70 Aligned_cols=153 Identities=22% Similarity=0.277 Sum_probs=107.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....+++...+ ...+.++ ....+.+|||||++.+..++..+++.+|++++|+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 5799999999999999999998877655555443332 3333441 2355788999999999999999999999999999
Q ss_pred EccCCCChhHHHH-HHHh----hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 269 AADDGVMPQTLEA-IAHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 269 Da~~g~~~q~~~~-l~~l----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|.++....+.... +..+ ...++|+++|+||+|+...... ........ ..+ ..+++++||++|.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~---~~~--~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVS--SRQGQDLA---KSY--GIPYIETSAKTRQGVEEA 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceec--HHHHHHHH---HHh--CCeEEEecCCCCCCHHHH
Confidence 9987432222221 1111 2347899999999999642111 11111110 111 348999999999999999
Q ss_pred HHHHHHH
Q 005218 344 EVALLLQ 350 (708)
Q Consensus 344 ~~~I~~~ 350 (708)
+++|.+.
T Consensus 154 ~~~l~~~ 160 (162)
T cd04138 154 FYTLVRE 160 (162)
T ss_pred HHHHHHH
Confidence 9998764
No 97
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=9.5e-20 Score=176.41 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=106.9
Q ss_pred EEEEEecCCCCchHHHHHhhcCccc----ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLV----AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~----~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+|+++|++|+|||||+++|.+.... ......+|.......+.+ ++..+.+|||||++.+..++...++.+|++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~ 79 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESLRSLWDKYYAECHAIIY 79 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 5899999999999999999764322 111223344444445566 78999999999999999988888999999999
Q ss_pred EEEccCCCC-hhHHHHHHHhh----hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~-~q~~~~l~~l~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++... ......+..+. ..++|+++++||+|+..... +.....+....... ....++++++||++|.|+
T Consensus 80 vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g~gv 157 (167)
T cd04160 80 VIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEI--GRRDCLVLPVSALEGTGV 157 (167)
T ss_pred EEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccc--cCCceEEEEeeCCCCcCH
Confidence 999986421 11122222221 24789999999999865321 12222221111000 112468999999999999
Q ss_pred hhHHHHHHH
Q 005218 341 DDLEVALLL 349 (708)
Q Consensus 341 ~~L~~~I~~ 349 (708)
++++++|.+
T Consensus 158 ~e~~~~l~~ 166 (167)
T cd04160 158 REGIEWLVE 166 (167)
T ss_pred HHHHHHHhc
Confidence 999999864
No 98
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.81 E-value=1.8e-19 Score=178.62 Aligned_cols=160 Identities=13% Similarity=0.139 Sum_probs=112.5
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
++|+++|..|+|||||+++|.+..+...+.+++..++....+.. ++ ..+.+|||+|++.|..++..+++.||++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 47999999999999999999998887667777766665555555 44 6789999999999999999999999999999
Q ss_pred EEccCCCChhH----HHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 268 VAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 268 vDa~~g~~~q~----~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+|+++....+. .+.+........| |+|+||+|+...........+......+.... ..+++++||++|.|++++
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAM-KAPLIFCSTSHSINVQKI 157 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHc-CCEEEEEeCCCCCCHHHH
Confidence 99988533322 2222222223455 68899999953211111011111111111111 258999999999999999
Q ss_pred HHHHHHHHH
Q 005218 344 EVALLLQAE 352 (708)
Q Consensus 344 ~~~I~~~~~ 352 (708)
+++|...+.
T Consensus 158 f~~l~~~l~ 166 (182)
T cd04128 158 FKIVLAKAF 166 (182)
T ss_pred HHHHHHHHH
Confidence 999987654
No 99
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.81 E-value=5.6e-20 Score=187.64 Aligned_cols=147 Identities=29% Similarity=0.358 Sum_probs=111.7
Q ss_pred EEEEEecCCCCchHHHHHhhcCcc-------------------------------cccccCceEEeeeEEEEEecCCeeE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSL-------------------------------VAKEAGGITQHMGAFVVGMSTGASI 239 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~-------------------------------~~~~~~gtT~di~~~~v~~~~g~~v 239 (708)
+|+++||+|+|||||+++|+.... .....+|+|++.....+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 589999999999999999953211 1122469999999988888 89999
Q ss_pred EEeeCCCcchhhhhhhcccccccEEEEEEEccC-------CCChhHHHHHHHhhhcC-CCEEEEEeCCCCCCC--Ccc--
Q 005218 240 TFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD-------GVMPQTLEAIAHANAAN-VPIVVAINKCDKPAA--DPE-- 307 (708)
Q Consensus 240 ~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~-------g~~~q~~~~l~~l~~~~-~piIvViNK~Dl~~~--~~~-- 307 (708)
+|||||||.+|...+..++..+|++++|+|+++ +...++.+.+..+...+ .|+|+++||+|+... +..
T Consensus 80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 999999999998888888899999999999998 45667888777776666 578999999999742 211
Q ss_pred -hhhhhhhhcccchhccC---CcceEEEEeeecCCCch
Q 005218 308 -RVKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 308 -~~~~~l~~~~~~~~~~~---~~~~vi~vSAktg~GI~ 341 (708)
.+.+.+.. .+..++ ..++++++||++|.|++
T Consensus 160 ~~i~~~l~~---~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 160 DEIKKELSP---FLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHH---HHHHcCCCcCCceEEEeecCcCCCCC
Confidence 22222221 111211 24789999999999997
No 100
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.81 E-value=2.3e-19 Score=173.61 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=113.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.+|+++|++|+|||||+++|.+..+.....++++.++....+.. ++ ..+.+|||||++.+..++..+++.+|++++|
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999998887766777777776666666 44 5789999999999999888889999999999
Q ss_pred EEccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 268 VAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 268 vDa~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+|+++....+.. ..+......++|+++|+||+|+....... .+...... ..+ .++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~-~~~~~~~~---~~~--~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP-TEEAKAFA---EKN--GLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC-HHHHHHHH---HHc--CCEEEEEECCCCCCHHHH
Confidence 999873332222 22222223468999999999996432111 11111110 111 358999999999999999
Q ss_pred HHHHHHH
Q 005218 344 EVALLLQ 350 (708)
Q Consensus 344 ~~~I~~~ 350 (708)
++.|...
T Consensus 157 ~~~l~~~ 163 (165)
T cd01868 157 FKQLLTE 163 (165)
T ss_pred HHHHHHH
Confidence 9998764
No 101
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.81 E-value=1.2e-19 Score=174.54 Aligned_cols=154 Identities=25% Similarity=0.256 Sum_probs=107.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
++|+++|++|||||||+++|....+.....+++. +.....+..+ ....+.||||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 5899999999999999999998877654444443 3333334442 2356788999999999999999999999999999
Q ss_pred EccCCCChhHHHH-HHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 269 AADDGVMPQTLEA-IAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 269 Da~~g~~~q~~~~-l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|.++....+.... +..+. ..++|+++|+||+|+.+..... ....... ...+ ..+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVS-REEGQAL---ARQW--GCPFYETSAKSKINVDEV 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceec-HHHHHHH---HHHc--CCeEEEecCCCCCCHHHH
Confidence 9987433222221 22222 2478999999999996422111 1111110 1122 268999999999999999
Q ss_pred HHHHHHH
Q 005218 344 EVALLLQ 350 (708)
Q Consensus 344 ~~~I~~~ 350 (708)
+++|...
T Consensus 155 ~~~l~~~ 161 (163)
T cd04136 155 FADLVRQ 161 (163)
T ss_pred HHHHHHh
Confidence 9998764
No 102
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.81 E-value=1.7e-19 Score=173.82 Aligned_cols=153 Identities=22% Similarity=0.215 Sum_probs=107.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.+|+++|++|+|||||++++.+..+.....+.++ +.......+ ++ ..+.+|||||++++..++..+++.+|++++|
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 6899999999999999999998776544444433 322333334 33 5788999999999999999999999999999
Q ss_pred EEccCCCChhHH----HHHHH-hhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMPQTL----EAIAH-ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~q~~----~~l~~-l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|+++....+.. ..+.. ....+.|+++++||+|+........ ...... .... .++++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSR-EEGQEL---ARKL--KIPYIETSAKDRLNVDK 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecH-HHHHHH---HHHc--CCcEEEeeCCCCCCHHH
Confidence 999874322222 22222 1234789999999999964321111 111110 1111 25899999999999999
Q ss_pred HHHHHHHH
Q 005218 343 LEVALLLQ 350 (708)
Q Consensus 343 L~~~I~~~ 350 (708)
+++.|...
T Consensus 155 l~~~l~~~ 162 (164)
T cd04145 155 AFHDLVRV 162 (164)
T ss_pred HHHHHHHh
Confidence 99998764
No 103
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=1.5e-19 Score=180.00 Aligned_cols=162 Identities=22% Similarity=0.253 Sum_probs=112.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....+++..++.. .+..+ ....+.||||||++.|..++..+++.+|++++|+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 379999999999999999999988876555655544432 22331 3367999999999999988888999999999999
Q ss_pred EccCCCChhHHH--HHHHhh--hcCCCEEEEEeCCCCCCCCcch-hhhh------hhhcccchhccCCcceEEEEeeecC
Q 005218 269 AADDGVMPQTLE--AIAHAN--AANVPIVVAINKCDKPAADPER-VKNQ------LGAEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 269 Da~~g~~~q~~~--~l~~l~--~~~~piIvViNK~Dl~~~~~~~-~~~~------l~~~~~~~~~~~~~~~vi~vSAktg 337 (708)
|.++....+..+ .+..+. ..+.|+++|+||+|+....... .... ..+.+..+....+.++++++||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 998854333322 222222 2478999999999996432111 0000 0111111112223368999999999
Q ss_pred CCchhHHHHHHHHHH
Q 005218 338 TGLDDLEVALLLQAE 352 (708)
Q Consensus 338 ~GI~~L~~~I~~~~~ 352 (708)
.|++++|++|...+.
T Consensus 160 ~~v~e~f~~l~~~~~ 174 (189)
T cd04134 160 RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998764
No 104
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.81 E-value=1.4e-19 Score=176.95 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=108.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
+.++|+++|++|+|||||+++|....+. ...|+++.++. .+.. .+..+.+|||||++.+..++..+++.+|++|+|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4579999999999999999999876653 33444444432 3334 678999999999999998888899999999999
Q ss_pred EEccCCCC-hhHHHHHHHhh----hcCCCEEEEEeCCCCCCC-CcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~~-~q~~~~l~~l~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+++... ......+..+. ..++|+++|+||+|+.+. +.+++.+.+.... ......+++++||++|.|++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~----~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTR----IRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCc----cCCCcEEEEEeeCCCCCChH
Confidence 99987432 22233332222 246899999999999642 2222222221100 01123478999999999999
Q ss_pred hHHHHHHH
Q 005218 342 DLEVALLL 349 (708)
Q Consensus 342 ~L~~~I~~ 349 (708)
+++++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 105
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=2e-19 Score=174.65 Aligned_cols=156 Identities=16% Similarity=0.178 Sum_probs=111.5
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....+.+..++....+... ....+.+|||||++.|..++..+++.+|++|+|+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999887765555555555544444442 2357899999999999999888999999999999
Q ss_pred EccCCCChhHHHHH----HHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 269 AADDGVMPQTLEAI----AHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 269 Da~~g~~~q~~~~l----~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
|+++....+....| ......+.|+++|+||+|+....... .++.... ... ...+++++||++|.|+++++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~-~~~~~~~---~~~--~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT-YEEAKQF---ADE--NGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC-HHHHHHH---HHH--cCCEEEEEECCCCCCHHHHH
Confidence 99985433333222 22223567899999999996432111 1111111 011 13589999999999999999
Q ss_pred HHHHHHH
Q 005218 345 VALLLQA 351 (708)
Q Consensus 345 ~~I~~~~ 351 (708)
+.+....
T Consensus 157 ~~l~~~~ 163 (166)
T cd04122 157 LETAKKI 163 (166)
T ss_pred HHHHHHH
Confidence 9887643
No 106
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=2.1e-19 Score=203.47 Aligned_cols=153 Identities=24% Similarity=0.329 Sum_probs=120.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcch--------hhhhhhccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA--------FSAMRKRGA 258 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~--------f~~~~~~~~ 258 (708)
..++|+|+|+||||||||+|+|++...+ ....+|+|++.....+.+ ++..+.||||||++. +......++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987764 477889999988888777 888999999999763 333344578
Q ss_pred ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 259 ~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
+.||++|+|+|++++....+...+..+...++|+|+|+||+|+.....+ ...+...+ + . ..+++||++|.
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~--~~~~~~~g-----~--~-~~~~iSA~~g~ 185 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD--AAALWSLG-----L--G-EPHPVSALHGR 185 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh--hHHHHhcC-----C--C-CeEEEEcCCCC
Confidence 8999999999999988777777777777789999999999999642211 11111111 1 1 34799999999
Q ss_pred CchhHHHHHHHHH
Q 005218 339 GLDDLEVALLLQA 351 (708)
Q Consensus 339 GI~~L~~~I~~~~ 351 (708)
|+++|+++|...+
T Consensus 186 gi~eL~~~i~~~l 198 (472)
T PRK03003 186 GVGDLLDAVLAAL 198 (472)
T ss_pred CcHHHHHHHHhhc
Confidence 9999999998754
No 107
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.81 E-value=2.5e-19 Score=172.55 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=114.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....++.+.++....+..+ ....+.||||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 479999999999999999999888876666666666665555552 2357899999999999988888899999999999
Q ss_pred EccCCCChhH----HHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 269 AADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 269 Da~~g~~~q~----~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
|+++....+. +..+..+...++|+++++||+|+....... ....... ...+ .++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVT-FLEASRF---AQEN--GLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCC-HHHHHHH---HHHc--CCEEEEEECCCCCCHHHHH
Confidence 9998543333 233333444688999999999996421110 1111110 0111 2689999999999999999
Q ss_pred HHHHHH
Q 005218 345 VALLLQ 350 (708)
Q Consensus 345 ~~I~~~ 350 (708)
+++...
T Consensus 155 ~~~~~~ 160 (161)
T cd04113 155 LKCARS 160 (161)
T ss_pred HHHHHh
Confidence 998763
No 108
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.81 E-value=2.9e-19 Score=174.08 Aligned_cols=154 Identities=15% Similarity=0.150 Sum_probs=110.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|||||||+++++...+.....+++..++....+... ....+.+|||||++.+..++...+..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 479999999999999999999777655555555445444444332 3468899999999999888888899999999999
Q ss_pred EccCCCChhHHHHH-HHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHH
Q 005218 269 AADDGVMPQTLEAI-AHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (708)
Q Consensus 269 Da~~g~~~q~~~~l-~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~ 345 (708)
|.+++...+....| ..+. ..++|+++|+||+|+...........+. . ....+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-------~-~~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFH-------R-KKNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHH-------H-HcCCEEEEEeCCCCCChHHHHH
Confidence 99885443333222 2221 1279999999999996322111111111 1 1245899999999999999999
Q ss_pred HHHHHH
Q 005218 346 ALLLQA 351 (708)
Q Consensus 346 ~I~~~~ 351 (708)
+|...+
T Consensus 153 ~l~~~~ 158 (166)
T cd00877 153 WLARKL 158 (166)
T ss_pred HHHHHH
Confidence 998765
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.81 E-value=2.2e-19 Score=175.81 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=107.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.+.++|+++|++|+|||||+++|.+..+.. ..+++ .+....+.+ ++..+.+|||||++.+..++..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-~~~t~--g~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDT-ISPTL--GFQIKTLEY-EGYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCcc--ccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 356899999999999999999999775432 22222 233334455 67899999999999998888888999999999
Q ss_pred EEEccCCCCh-hHHHHHHHh----hhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMP-QTLEAIAHA----NAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~-q~~~~l~~l----~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++.... +....+..+ ...+.|+++|+||+|+..... +.+...+.... .....++++++||++|.|+
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDK----ISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccc----cCCCceEEEeccCCCCcCH
Confidence 9999875221 112222222 235789999999999964321 12211111100 0112468999999999999
Q ss_pred hhHHHHHHH
Q 005218 341 DDLEVALLL 349 (708)
Q Consensus 341 ~~L~~~I~~ 349 (708)
++++++|..
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999998853
No 110
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.81 E-value=2.7e-19 Score=172.01 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=104.7
Q ss_pred EEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvD 269 (708)
+|+++|++|||||||+++|.+... .....+++..+. ..+.. .+..+.+|||||++.+..++..+++.+|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEK-GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEE-CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 489999999999999999998653 223333333222 22334 77899999999999999999999999999999999
Q ss_pred ccCCCChh-HHHHHHHh------hhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 270 ADDGVMPQ-TLEAIAHA------NAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 270 a~~g~~~q-~~~~l~~l------~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+++..... ....+..+ ...++|+++|+||+|+.+... .++...+.... . .....+++++||++|.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~--~--~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 78 SSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLEN--I--KDKPWHIFASNALTGEGLD 153 (162)
T ss_pred CCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCcc--c--cCceEEEEEeeCCCCCchH
Confidence 98754221 11122211 124789999999999965322 11211111100 0 1123468999999999999
Q ss_pred hHHHHHHH
Q 005218 342 DLEVALLL 349 (708)
Q Consensus 342 ~L~~~I~~ 349 (708)
+++++|..
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 111
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.81 E-value=2e-19 Score=173.61 Aligned_cols=155 Identities=22% Similarity=0.270 Sum_probs=107.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....++++ +........+ ....+.+|||||++++..++..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 3799999999999999999998877655444433 3333333332 2367889999999999999999999999999999
Q ss_pred EccCCCChhHHHHH-HH----hhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 269 AADDGVMPQTLEAI-AH----ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 269 Da~~g~~~q~~~~l-~~----l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|+++....+....| .. ....++|+++|+||+|+........ ...... ...+ ..+++++||++|.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST-EEGKEL---ARQW--GCPFLETSAKERVNVDEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH-HHHHHH---HHHc--CCEEEEeecCCCCCHHHH
Confidence 99874322222221 11 1224789999999999964221110 111100 0111 268999999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
+++|....
T Consensus 154 ~~~l~~~~ 161 (164)
T smart00173 154 FYDLVREI 161 (164)
T ss_pred HHHHHHHH
Confidence 99998754
No 112
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.81 E-value=4.2e-19 Score=172.90 Aligned_cols=156 Identities=16% Similarity=0.179 Sum_probs=112.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|||||||+++|++..+.....+.++.+.....+... ....+.+|||||++.|..++..+++.+|++++|+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999888766555555555554555542 2357899999999999988888999999999999
Q ss_pred EccCCCChhHHHHH----HHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 269 AADDGVMPQTLEAI----AHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 269 Da~~g~~~q~~~~l----~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
|+++....+....| ......+.|+++|+||+|+....... ..+.... .... ..+++++||++|.|+++++
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 85 DITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS-YEEGEAF---AKEH--GLIFMETSAKTASNVEEAF 158 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC-HHHHHHH---HHHc--CCEEEEEeCCCCCCHHHHH
Confidence 99874333333222 22223478999999999996322111 1111111 0111 3579999999999999999
Q ss_pred HHHHHHH
Q 005218 345 VALLLQA 351 (708)
Q Consensus 345 ~~I~~~~ 351 (708)
+.+.+.+
T Consensus 159 ~~~~~~~ 165 (168)
T cd01866 159 INTAKEI 165 (168)
T ss_pred HHHHHHH
Confidence 9987754
No 113
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=4.5e-19 Score=171.31 Aligned_cols=157 Identities=25% Similarity=0.356 Sum_probs=117.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh----------hhhh-h
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF----------SAMR-K 255 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f----------~~~~-~ 255 (708)
++++|+++|++|+|||||+|+|.+.... ..+.+++|++.....+.. ++..+.+|||||+... ..+. .
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 3678999999999999999999987754 366778888876666666 7788999999997433 1111 2
Q ss_pred cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcch---hhhhhhhcccchhccCCcceEEEE
Q 005218 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER---VKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~---~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
..+..+|++++|+|++++...+....+..+...+.|+++++||+|+.+..... ..+.+... +. .....+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRK---LP-FLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhh---cc-cccCCceEEE
Confidence 34678999999999999887777777777777789999999999997542111 12222211 11 1124689999
Q ss_pred eeecCCCchhHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLL 349 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~ 349 (708)
||++|.|++++++++.+
T Consensus 156 Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 156 SALTGQGVDKLFDAIDE 172 (174)
T ss_pred eccCCCCHHHHHHHHHH
Confidence 99999999999998875
No 114
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.81 E-value=2.7e-19 Score=173.06 Aligned_cols=155 Identities=23% Similarity=0.252 Sum_probs=108.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|.+|+|||||++++....+.....+++...+ ...+... ..+.+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 5899999999999999999997766544444443332 3344442 2456789999999999999999999999999999
Q ss_pred EccCCCChhHHH-HHHHh----hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 269 AADDGVMPQTLE-AIAHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 269 Da~~g~~~q~~~-~l~~l----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|.++....+... .+..+ ...+.|+++|+||+|+........ ...... ...+ ..+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK-EQGQNL---ARQW--GCAFLETSAKAKINVNEI 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH-HHHHHH---HHHh--CCEEEEeeCCCCCCHHHH
Confidence 998643322221 22222 235789999999999964221111 111110 0111 258999999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
+++|....
T Consensus 155 ~~~l~~~l 162 (164)
T cd04175 155 FYDLVRQI 162 (164)
T ss_pred HHHHHHHh
Confidence 99998653
No 115
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.3e-19 Score=182.27 Aligned_cols=235 Identities=25% Similarity=0.324 Sum_probs=176.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc---ccccccCceEEeeeEEEEEec-------------------C------CeeE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGMS-------------------T------GASI 239 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~---~~~~~~~gtT~di~~~~v~~~-------------------~------g~~v 239 (708)
...+|..+||++||||||..+|.+-. ....-..|+|...++....+. . -..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 45799999999999999999997632 222334566665544322210 0 1468
Q ss_pred EEeeCCCcchhhhhhhcccccccEEEEEEEccC-CCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcchhhhhhhhc-
Q 005218 240 TFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD-GVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQLGAE- 316 (708)
Q Consensus 240 ~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~-g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~~~~~l~~~- 316 (708)
.|+|.|||+-....+..+....|.++||++++. ..++|+.+++-.+.-.++. +|++-||+||.+. ++..+...+.
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~--E~AlE~y~qIk 166 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR--ERALENYEQIK 166 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH--HHHHHHHHHHH
Confidence 999999999988888889999999999999987 4689999999888777765 8999999999742 3322222211
Q ss_pred ccchhccCCcceEEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeC--------CCCcEEEEEEEee
Q 005218 317 GLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDK--------GRGPLTTAIVKAG 388 (708)
Q Consensus 317 ~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~--------~~G~v~~~~V~~G 388 (708)
.+....+-.+.|++|+||..+.||+-|+++|.... +.+..+.+.|+.++|..+|-.. -+|-+..|.+.+|
T Consensus 167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I--ptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G 244 (415)
T COG5257 167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI--PTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQG 244 (415)
T ss_pred HHhcccccCCCceeeehhhhccCHHHHHHHHHHhC--CCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeee
Confidence 11112334567999999999999999999999864 4455667889999999887543 3567889999999
Q ss_pred EEcCCCEEEEccc--------------cceEEEEecccCCcccccCCCCcEEE
Q 005218 389 TLVCGQHVVVGHE--------------WGRIRAIRDMVGKSTDKARPAMPVEI 427 (708)
Q Consensus 389 ~L~~gd~v~~g~~--------------~~kVr~i~~~~~~~v~~a~~g~~V~i 427 (708)
.|+.||.+-+-|- +.+|.+|+ ..+..+++|.||=-|.|
T Consensus 245 ~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~-ag~~~~~ea~PGGLvgv 296 (415)
T COG5257 245 VLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQ-AGGEDVEEARPGGLVGV 296 (415)
T ss_pred eEecCCeEEecCCeEeecCCceEEEEeeEEEEEEE-eCCeeeeeccCCceEEE
Confidence 9999999988651 23577777 67788999999876665
No 116
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.80 E-value=2.3e-19 Score=176.59 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=111.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.+|+++|.+|+|||||+++|....+...+.|++..++. ..+.. ++ +.+.||||||++.|..++..+++.+|++|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 58999999999999999999998886666676655543 23344 44 6788999999999999888899999999999
Q ss_pred EEccCCCChhHHH-HH-HHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhhh---------cccchhccCCcceEEEEee
Q 005218 268 VAADDGVMPQTLE-AI-AHAN--AANVPIVVAINKCDKPAADPERVKNQLGA---------EGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 268 vDa~~g~~~q~~~-~l-~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~vi~vSA 334 (708)
+|.++....+... .| ..+. ..++|+|+|+||+|+.+.. ...+.+.. .+..+....+..+++++||
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~--~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 157 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP--STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh--hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 9998854333322 12 2222 2478999999999985421 11111110 0111111122358999999
Q ss_pred ecCCCchhHHHHHHHH
Q 005218 335 VKKTGLDDLEVALLLQ 350 (708)
Q Consensus 335 ktg~GI~~L~~~I~~~ 350 (708)
++|.|++++++.+...
T Consensus 158 ~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 158 LTQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988764
No 117
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.80 E-value=7.7e-19 Score=175.21 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=115.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
...+|+++|..+||||||+.+|....+.....++++.++....+.. ++ ..+.||||||++.|..++..+++.+|++|
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999988776655566677765555555 44 67899999999999999998999999999
Q ss_pred EEEEccCCCChhHHHHH-HHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 266 LVVAADDGVMPQTLEAI-AHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~l-~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|+|.++..+.+....| ..+. ..+.|+|+|+||+|+.....-. .++..... .. ...+++++||++|.|+++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~-~~~~~~~a---~~--~~~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA-TEQAQAYA---ER--NGMTFFEVSPLCNFNITE 157 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC-HHHHHHHH---HH--cCCEEEEecCCCCCCHHH
Confidence 99999985433332222 2222 2478999999999995421110 11111110 11 135899999999999999
Q ss_pred HHHHHHHHHH
Q 005218 343 LEVALLLQAE 352 (708)
Q Consensus 343 L~~~I~~~~~ 352 (708)
+|++|...+.
T Consensus 158 ~F~~l~~~i~ 167 (189)
T cd04121 158 SFTELARIVL 167 (189)
T ss_pred HHHHHHHHHH
Confidence 9999987553
No 118
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.80 E-value=6e-19 Score=167.93 Aligned_cols=146 Identities=26% Similarity=0.367 Sum_probs=114.3
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh--------hhcccc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM--------RKRGAA 259 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~--------~~~~~~ 259 (708)
|.+|+++|++|+|||||+++|.+..... ...+++|.+.....+.. .+.++.+|||||+.++... ....+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 4689999999999999999999887643 66789998887777776 7889999999998665422 224567
Q ss_pred cccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 260 ~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
.+|++++|+|+++.........+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-------------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-------------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-------------ccccCCCceEEEECCCCCC
Confidence 9999999999998666655555544 467999999999999653221 0111245899999999999
Q ss_pred chhHHHHHHHH
Q 005218 340 LDDLEVALLLQ 350 (708)
Q Consensus 340 I~~L~~~I~~~ 350 (708)
+++|+++|...
T Consensus 145 v~~l~~~l~~~ 155 (157)
T cd04164 145 LDELKEALLEL 155 (157)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 119
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.80 E-value=4.5e-19 Score=174.15 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=112.5
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-----------CCeeEEEeeCCCcchhhhhhhcc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-----------TGASITFLDTPGHAAFSAMRKRG 257 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-----------~g~~v~liDTpG~~~f~~~~~~~ 257 (708)
-++|+++|++|+|||||+++|.+..+.....++++.++....+.+. ....+.||||||++.|..++..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 3789999999999999999999888776666666666554444431 23678999999999999999999
Q ss_pred cccccEEEEEEEccCCCChhHHHHH-HHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEE
Q 005218 258 AAVTDIVVLVVAADDGVMPQTLEAI-AHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~~~q~~~~l-~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
++.+|++++|+|+++....+....| ..+. ..+.|+++|+||+|+.+..... .+..... ...+ .++++++
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~e~ 157 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS-EEQAKAL---ADKY--GIPYFET 157 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC-HHHHHHH---HHHc--CCeEEEE
Confidence 9999999999999874332322222 1221 2367899999999996422111 0111111 0111 2589999
Q ss_pred eeecCCCchhHHHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~~~ 351 (708)
||++|.|++++++.|....
T Consensus 158 Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 158 SAATGTNVEKAVERLLDLV 176 (180)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998643
No 120
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.80 E-value=3.9e-19 Score=171.97 Aligned_cols=152 Identities=21% Similarity=0.195 Sum_probs=106.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvD 269 (708)
.+|+++|.+|+|||||+++|....+. ...|++..++ ..+.. ....+.||||||++.+..++..+++.+|++++|+|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 37999999999999999999766664 3444443333 23444 67899999999999999999999999999999999
Q ss_pred ccCCC-ChhHHHHHHHhh----hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 270 ADDGV-MPQTLEAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 270 a~~g~-~~q~~~~l~~l~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+++.. ..+..+.+..+. ..+.|+++++||+|+.+... .++...+ +... .....+.++++||++|.|++++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---~~~~-~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKL---GLHS-LRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHh---Cccc-cCCCCEEEEEeeCCCCCCHHHH
Confidence 98732 122233333322 13589999999999964322 1222222 1110 0112346789999999999999
Q ss_pred HHHHHH
Q 005218 344 EVALLL 349 (708)
Q Consensus 344 ~~~I~~ 349 (708)
+++|..
T Consensus 153 ~~~l~~ 158 (159)
T cd04150 153 LDWLSN 158 (159)
T ss_pred HHHHhc
Confidence 999853
No 121
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.80 E-value=6.3e-19 Score=169.60 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=114.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.+|+++|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.+|||||++.+..++...++.+|++++|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 47999999999999999999988887666677777666666666 44 5789999999999998888899999999999
Q ss_pred EEccCCCChhHHHHH-HHh---hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 268 VAADDGVMPQTLEAI-AHA---NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 268 vDa~~g~~~q~~~~l-~~l---~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+|+++....+....| ..+ ...++|+++++||+|+....... .+..... .... .++++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 80 YDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS-REEAEAF---AEEH--GLPFFETSAKTNTNVEEA 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCC-HHHHHHH---HHHc--CCeEEEEeCCCCCCHHHH
Confidence 999875433333222 222 22578999999999986421111 0111110 1111 257999999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
+++|...+
T Consensus 154 ~~~i~~~~ 161 (164)
T smart00175 154 FEELAREI 161 (164)
T ss_pred HHHHHHHH
Confidence 99998754
No 122
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.80 E-value=2.6e-19 Score=171.20 Aligned_cols=148 Identities=28% Similarity=0.312 Sum_probs=111.2
Q ss_pred EEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh------hhccc--ccccEEE
Q 005218 194 VMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM------RKRGA--AVTDIVV 265 (708)
Q Consensus 194 IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~------~~~~~--~~aDivl 265 (708)
++|++|+|||||+|+|.+......+.+++|.+.....+.+ ++..+.||||||+..+... +..++ ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee-CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 5899999999999999988766677889999987777777 6789999999999876642 33444 4899999
Q ss_pred EEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHH
Q 005218 266 LVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~ 345 (708)
+|+|+++. .+....+..+...++|+++|+||+|+.+... ........ ...+ ..+++++||++|.|++++++
T Consensus 80 ~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~--~~~~~~~~---~~~~--~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 80 NVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRG--IKIDLDKL---SELL--GVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccccc--chhhHHHH---HHhh--CCCeEEEEccCCCCHHHHHH
Confidence 99999873 3344445556667899999999999964321 11111110 0111 25899999999999999999
Q ss_pred HHHHHH
Q 005218 346 ALLLQA 351 (708)
Q Consensus 346 ~I~~~~ 351 (708)
+|...+
T Consensus 151 ~l~~~~ 156 (158)
T cd01879 151 AIAELA 156 (158)
T ss_pred HHHHHh
Confidence 987753
No 123
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.80 E-value=9.3e-19 Score=178.00 Aligned_cols=158 Identities=16% Similarity=0.063 Sum_probs=115.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC--CeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST--GASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~--g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
++|+++|++|+|||||+++|.+..+...+.++++.|+....+.+++ ...+.||||||++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999999888777778888887666666633 47889999999999999999999999999999
Q ss_pred EEccCCCChhHH----HHHHHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 268 VAADDGVMPQTL----EAIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 268 vDa~~g~~~q~~----~~l~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
+|+++....+.. ..+.... ..+.|+++|+||+|+...... ........ ...+ ..+++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v-~~~~~~~~---~~~~--~~~~~~iSAktg~gv 154 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV-KDDKHARF---AQAN--GMESCLVSAKTGDRV 154 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc-CHHHHHHH---HHHc--CCEEEEEECCCCCCH
Confidence 999874332322 2222221 124579999999999632111 11111110 0111 247899999999999
Q ss_pred hhHHHHHHHHHHH
Q 005218 341 DDLEVALLLQAEM 353 (708)
Q Consensus 341 ~~L~~~I~~~~~~ 353 (708)
++++++|...+..
T Consensus 155 ~~lf~~l~~~l~~ 167 (215)
T cd04109 155 NLLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999886543
No 124
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.80 E-value=5.4e-19 Score=174.95 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=112.5
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec--CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~--~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
++|+++|++|+|||||+++|.+..+.....+++..++... +... ....+.||||||++.|..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 4799999999999999999999888766666666655433 3331 345789999999999999988899999999999
Q ss_pred EEccCCCChhHHH-HH-HHhh--hcCCCEEEEEeCCCCCCCCcc-hhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMPQTLE-AI-AHAN--AANVPIVVAINKCDKPAADPE-RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~q~~~-~l-~~l~--~~~~piIvViNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|+++....+... .| ..+. ..++|+|+|+||+|+...... +..... ....+....+..+++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~--~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPA--QAESVAKKQGAFAYLECSAKTMENVEE 157 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHH--HHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence 9998754333322 12 1121 247899999999999642210 000000 000011111223789999999999999
Q ss_pred HHHHHHHHHHH
Q 005218 343 LEVALLLQAEM 353 (708)
Q Consensus 343 L~~~I~~~~~~ 353 (708)
+++.+...+..
T Consensus 158 ~f~~l~~~~~~ 168 (187)
T cd04132 158 VFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 125
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.80 E-value=6.4e-19 Score=173.28 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=110.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
+.++|+++|++|+|||||+++|....+. ...|+++.++. .+.. .+..+.||||||++.+..++..+++.||++|+|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY-KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE-CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4589999999999999999999766553 34455554443 3344 678999999999999999999999999999999
Q ss_pred EEccCCC-ChhHHHHHHHhh----hcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGV-MPQTLEAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~-~~q~~~~l~~l~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+++.. .....+.+..+. ..++|+++|+||+|+.+.. .+++.+.+ +... .....+.++++||++|.|++
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---~~~~-~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKL---GLHS-IRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHh---Cccc-cCCCcEEEEEeeCCCCCCHH
Confidence 9998742 222333343332 2368999999999996432 12222222 1110 01123457899999999999
Q ss_pred hHHHHHHHH
Q 005218 342 DLEVALLLQ 350 (708)
Q Consensus 342 ~L~~~I~~~ 350 (708)
+++++|...
T Consensus 164 e~~~~l~~~ 172 (175)
T smart00177 164 EGLTWLSNN 172 (175)
T ss_pred HHHHHHHHH
Confidence 999999765
No 126
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.80 E-value=4.7e-19 Score=173.84 Aligned_cols=155 Identities=21% Similarity=0.248 Sum_probs=111.6
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
..+|+++|.+|+|||||++++....+.....+++...+ ...+.. ++ ..+.||||||++.|..++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 46899999999999999999998887655555554333 223344 34 678999999999999999999999999999
Q ss_pred EEEccCCCChhHHHH----HHHhh-hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 267 VVAADDGVMPQTLEA----IAHAN-AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 267 VvDa~~g~~~q~~~~----l~~l~-~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|+|.++....+.... +.... ..++|+++|+||+|+.+... +... .+..+.. ...++++++||++|.|++
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~--v~~~---~~~~~a~-~~~~~~~e~Sa~~~~~v~ 153 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ--VTTE---EGRNLAR-EFNCPFFETSAALRHYID 153 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc--cCHH---HHHHHHH-HhCCEEEEEecCCCCCHH
Confidence 999998655444332 22222 24789999999999854211 1110 0111111 113589999999999999
Q ss_pred hHHHHHHHHH
Q 005218 342 DLEVALLLQA 351 (708)
Q Consensus 342 ~L~~~I~~~~ 351 (708)
++|++|....
T Consensus 154 ~~f~~l~~~~ 163 (172)
T cd04141 154 DAFHGLVREI 163 (172)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 127
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.80 E-value=5.7e-19 Score=174.90 Aligned_cols=161 Identities=22% Similarity=0.224 Sum_probs=109.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec--CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~--~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
...+|+++|++|+|||||+++|....+... .++++.+.....+... .+..+.+|||||++.|..++..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 357899999999999999999988776532 3433333333333221 4678999999999999988888899999999
Q ss_pred EEEEccCCCChhHH-H----HHHHhhhcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 266 LVVAADDGVMPQTL-E----AIAHANAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 266 lVvDa~~g~~~q~~-~----~l~~l~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
+|+|+++....+.. . ........++|+++|+||+|+.... .+.....+...... .....+++++||++|.|
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~SA~~~~g 157 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELS---ASTPWHVQPACAIIGEG 157 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccC---CCCceEEEEeecccCCC
Confidence 99999874221111 1 1122233578999999999996421 12221111100000 01125789999999999
Q ss_pred chhHHHHHHHHHH
Q 005218 340 LDDLEVALLLQAE 352 (708)
Q Consensus 340 I~~L~~~I~~~~~ 352 (708)
+++|+++|.+...
T Consensus 158 i~~l~~~l~~~l~ 170 (183)
T cd04152 158 LQEGLEKLYEMIL 170 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 128
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.80 E-value=3.2e-19 Score=171.73 Aligned_cols=151 Identities=22% Similarity=0.222 Sum_probs=104.9
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa 270 (708)
+|+++|++|+|||||+++|....+.. ..+++..+ ...+.. .+..+.+|||||++.|..++..++..+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~--~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFN--VETVTY-KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcC--eEEEEE-CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 58999999999999999998766542 23333222 233444 678999999999999999888899999999999999
Q ss_pred cCCCCh-hHHHHHHH-hh---hcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 271 DDGVMP-QTLEAIAH-AN---AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 271 ~~g~~~-q~~~~l~~-l~---~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
++.... ...+.+.. +. ..++|+++|+||+|+.+.. ..++...+ +... ......+++++||++|.|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~---~~~~-~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKL---GLSE-LKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHh---Cccc-cCCCcEEEEEeeccCCCCHHHHH
Confidence 873211 11222222 12 2478999999999996432 12222222 1110 01123479999999999999999
Q ss_pred HHHHH
Q 005218 345 VALLL 349 (708)
Q Consensus 345 ~~I~~ 349 (708)
++|.+
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99864
No 129
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.80 E-value=3.4e-19 Score=175.73 Aligned_cols=161 Identities=18% Similarity=0.187 Sum_probs=112.3
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
++|+++|++++|||||+.++....+...+.+++..++. ..+..+ ....+.+|||+|++.|..++..+++.+|++|+|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 57999999999999999999998887666666654442 233332 3467899999999999999999999999999999
Q ss_pred EccCCCChhHH-H-HHHHhh--hcCCCEEEEEeCCCCCCCCcch-----hhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 269 AADDGVMPQTL-E-AIAHAN--AANVPIVVAINKCDKPAADPER-----VKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 269 Da~~g~~~q~~-~-~l~~l~--~~~~piIvViNK~Dl~~~~~~~-----~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
|.++..+.+.. . .+..+. ..+.|+++|+||+||.+..... ......+.+..+....+..+++++||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99985443332 2 222222 2478999999999995421000 0000011111111111223699999999999
Q ss_pred chhHHHHHHHHH
Q 005218 340 LDDLEVALLLQA 351 (708)
Q Consensus 340 I~~L~~~I~~~~ 351 (708)
++++|+.+.+.+
T Consensus 161 V~~~F~~~~~~~ 172 (176)
T cd04133 161 VKAVFDAAIKVV 172 (176)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 130
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=3.7e-19 Score=177.23 Aligned_cols=154 Identities=23% Similarity=0.271 Sum_probs=107.8
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
+|+++|.+|||||||+++|....+.....++++..+ ...+.+ ++ ..+.||||||++.|..++..+++.+|++|+|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 489999999999999999998877655544443332 223333 33 46889999999999999999999999999999
Q ss_pred EccCCCChhHHH----HHHHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 269 AADDGVMPQTLE----AIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 269 Da~~g~~~q~~~----~l~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|.++..+..... .+.... ..++|+|+|+||+|+........ ...... ...+ ..+++++||++|.|++
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~-~~~~~~---~~~~--~~~~~e~SAk~~~~v~ 152 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST-EEGAAL---ARRL--GCEFIEASAKTNVNVE 152 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH-HHHHHH---HHHh--CCEEEEecCCCCCCHH
Confidence 998754333222 222222 14689999999999964221110 111110 0111 2579999999999999
Q ss_pred hHHHHHHHHHH
Q 005218 342 DLEVALLLQAE 352 (708)
Q Consensus 342 ~L~~~I~~~~~ 352 (708)
+++++|.....
T Consensus 153 ~l~~~l~~~l~ 163 (190)
T cd04144 153 RAFYTLVRALR 163 (190)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 131
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=3.1e-19 Score=211.20 Aligned_cols=207 Identities=18% Similarity=0.208 Sum_probs=145.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcc----------hhhhhhh-
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHA----------AFSAMRK- 255 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~----------~f~~~~~- 255 (708)
..++|+++|+||||||||+|+|++.++. .++.+|||++.....+.+ ++..+.||||||+. .|..++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 4589999999999999999999998864 477899999988777777 78899999999963 2333332
Q ss_pred cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEee
Q 005218 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSA 334 (708)
.+++.+|++++|+|++++...++...+..+...++|+|+|+||+|+.+... +.+...+... + ......+++++||
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~---l-~~~~~~~ii~iSA 603 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTE---F-DRVTWARRVNLSA 603 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHh---c-cCCCCCCEEEEEC
Confidence 347899999999999999999999888888788999999999999964321 1111112111 1 1123468899999
Q ss_pred ecCCCchhHHHHHHHHHHHccccccc---CCCcceeEEEEEeeC-CCCcEEE-EEEEeeEEcCCCEEEEcc
Q 005218 335 VKKTGLDDLEVALLLQAEMMNLKARV---DGPAQAYVVEARLDK-GRGPLTT-AIVKAGTLVCGQHVVVGH 400 (708)
Q Consensus 335 ktg~GI~~L~~~I~~~~~~~~~~~~~---~~p~~~~V~e~~~~~-~~G~v~~-~~V~~G~L~~gd~v~~g~ 400 (708)
++|.|+++|++.+.+..+....+.++ +..+...+ +....+ ..|.... -.+.++..+|-..+++.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~-~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f~~ 673 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQ-AEHPHPLRGGKQPRILFATQASTRPPRFVIFTT 673 (712)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHH-hhCCCCccCCeeeeEEEEECCCCCCCEEEEEcC
Confidence 99999999999998877654433221 11122111 222222 1233332 234667777877777754
No 132
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=9.7e-19 Score=174.37 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=112.5
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.+|+++|++|+|||||+++|....+.. ...++++.++....+.++ ....+.||||||++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 479999999999999999999888764 445555555544444441 236789999999999988888889999999999
Q ss_pred EEccCCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 268 VAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 268 vDa~~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+|+++....+ +...+......++|+++|+||+|+...... ...+.... ...+ ..+++++||++|.|+++|
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~-~~~~~~~l---~~~~--~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVV-KREDGERL---AKEY--GVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcccc-CHHHHHHH---HHHc--CCeEEEEeCCCCCCHHHH
Confidence 9998743322 222222223347899999999999532110 01111111 1112 258999999999999999
Q ss_pred HHHHHHHHHHc
Q 005218 344 EVALLLQAEMM 354 (708)
Q Consensus 344 ~~~I~~~~~~~ 354 (708)
+++|...+...
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999876544
No 133
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.80 E-value=8.2e-19 Score=170.36 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=111.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....+.++.++....+.++ ....+.+|||||++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 479999999999999999999988766555666666555555552 2356779999999999999989999999999999
Q ss_pred EccCCCChhHHHHH-----HHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 269 AADDGVMPQTLEAI-----AHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 269 Da~~g~~~q~~~~l-----~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+++....+....| ..+. ..++|+++|+||+|+....... .+..... ... .+..+++++||++|.|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~---~~~-~~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVS-TKKAQQW---CQS-NGNIPYFETSAKEAINV 155 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccC-HHHHHHH---HHH-cCCceEEEEECCCCCCH
Confidence 99874332222222 1111 1278999999999996321110 1111110 111 12368999999999999
Q ss_pred hhHHHHHHHHH
Q 005218 341 DDLEVALLLQA 351 (708)
Q Consensus 341 ~~L~~~I~~~~ 351 (708)
++++++|...+
T Consensus 156 ~~l~~~i~~~~ 166 (172)
T cd01862 156 EQAFETIARKA 166 (172)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 134
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.6e-19 Score=170.86 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=118.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+..+|+++|..+||||||+-++..+.+.....++|.-.+....+..+ ...++.+|||+|+++|..+...|+++|+++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 45789999999999999999999999988777777766666666652 33788899999999999999999999999999
Q ss_pred EEEccCCCChhHH-HHHHHhhhc---CCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 267 VVAADDGVMPQTL-EAIAHANAA---NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 267 VvDa~~g~~~q~~-~~l~~l~~~---~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|||+++.-+.+.. ..+..+... ++-+.+|+||+||.....-... +.. .+.+ .....++++|||||.|+++
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~-ea~----~yAe-~~gll~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFE-EAQ----AYAE-SQGLLFFETSAKTGENVNE 157 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHH-HHH----HHHH-hcCCEEEEEecccccCHHH
Confidence 9999984433322 223334332 3336679999999652111111 110 0111 1235899999999999999
Q ss_pred HHHHHHHHHHHc
Q 005218 343 LEVALLLQAEMM 354 (708)
Q Consensus 343 L~~~I~~~~~~~ 354 (708)
+|..|.+.+...
T Consensus 158 if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 158 IFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHhccCc
Confidence 999999875443
No 135
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=5.1e-19 Score=170.45 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=123.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+..+++++|..+||||||+++++.+.+..++.++|..|+....+.+. ..+.+.||||||+++|..+...|+++++++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 44899999999999999999999999999999999999888887763 34678999999999999999999999999999
Q ss_pred EEEccCCCC-hhHHHHHHHhhh---c-CCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 267 VVAADDGVM-PQTLEAIAHANA---A-NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 267 VvDa~~g~~-~q~~~~l~~l~~---~-~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|||.++..+ .++...+..+.. . ++-+++|+||.||.+. .++..+-.+ ....++ +..++++||++|.||.
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk--rqvs~eEg~--~kAkel--~a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK--RQVSIEEGE--RKAKEL--NAEFIETSAKAGENVK 174 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch--hhhhHHHHH--HHHHHh--CcEEEEecccCCCCHH
Confidence 999988433 333333443332 2 3458899999999753 111111111 001111 3478999999999999
Q ss_pred hHHHHHHHHHHHc
Q 005218 342 DLEVALLLQAEMM 354 (708)
Q Consensus 342 ~L~~~I~~~~~~~ 354 (708)
.||..|...+..+
T Consensus 175 ~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 175 QLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHhccCc
Confidence 9999988765433
No 136
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.80 E-value=5.4e-19 Score=171.53 Aligned_cols=153 Identities=24% Similarity=0.305 Sum_probs=105.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||++++++..+.....+.+...+. ..+..+ ....+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEE-EEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999988876554443332221 112221 4467899999999999988888889999999999
Q ss_pred EccCCCChhHH----HHHHHhhh---cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 269 AADDGVMPQTL----EAIAHANA---ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 269 Da~~g~~~q~~----~~l~~l~~---~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|.++....+.. +.+..... .++|+++|+||+|+.....-. ....... ...+ .++++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~e~SA~~g~~v~ 154 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVS-SNEGAAC---ATEW--NCAFMETSAKTNHNVQ 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeec-HHHHHHH---HHHh--CCcEEEeecCCCCCHH
Confidence 99875433222 22222221 468999999999996421100 0110000 0111 3578999999999999
Q ss_pred hHHHHHHH
Q 005218 342 DLEVALLL 349 (708)
Q Consensus 342 ~L~~~I~~ 349 (708)
+++++|..
T Consensus 155 ~~f~~l~~ 162 (165)
T cd04140 155 ELFQELLN 162 (165)
T ss_pred HHHHHHHh
Confidence 99999875
No 137
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.80 E-value=5.1e-19 Score=176.59 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=113.3
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
..+|+++|..++|||||+.++....+.....+++..++.. .+..+ ....+.+|||||++.|..++..+++.+|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA-QTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE-EEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4689999999999999999999988876666666544432 23331 346789999999999999999999999999999
Q ss_pred EEccCCCChhHHH-HHH-Hhh--hcCCCEEEEEeCCCCCCCCcc-hhhhhh------hhcccchhccCCcceEEEEeeec
Q 005218 268 VAADDGVMPQTLE-AIA-HAN--AANVPIVVAINKCDKPAADPE-RVKNQL------GAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 268 vDa~~g~~~q~~~-~l~-~l~--~~~~piIvViNK~Dl~~~~~~-~~~~~l------~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
||.++..+.+... .|. .+. ..++|+++|+||+||.+.... ...... .+.+..+....+..+++++||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 9998854333332 221 121 247899999999999642110 000000 00111111112235899999999
Q ss_pred CCCchhHHHHHHHHH
Q 005218 337 KTGLDDLEVALLLQA 351 (708)
Q Consensus 337 g~GI~~L~~~I~~~~ 351 (708)
|.|++++|++|.+.+
T Consensus 162 g~~v~e~f~~l~~~~ 176 (191)
T cd01875 162 QDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 138
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.80 E-value=4.9e-19 Score=172.79 Aligned_cols=159 Identities=20% Similarity=0.222 Sum_probs=108.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
++|+++|++|+|||||+++|.+..+.....+.+. +.....+..+ ..+.+.+|||||++.|...+...++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 4799999999999999999998887655544443 3333334442 2356789999999999988888999999999999
Q ss_pred EccCCCChhH-----HHHHHHhhhcCCCEEEEEeCCCCCCCCcchh-hhhh------hhcccchhccCCcceEEEEeeec
Q 005218 269 AADDGVMPQT-----LEAIAHANAANVPIVVAINKCDKPAADPERV-KNQL------GAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 269 Da~~g~~~q~-----~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~-~~~l------~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
|.++....+. ...+... ..+.|+++|+||+|+.+...... .... .+.+.......+..+++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 9987533222 2222222 46899999999999964321110 0000 00011111112334799999999
Q ss_pred CCCchhHHHHHHHH
Q 005218 337 KTGLDDLEVALLLQ 350 (708)
Q Consensus 337 g~GI~~L~~~I~~~ 350 (708)
|.|++++++.+...
T Consensus 159 ~~gi~~~f~~~~~~ 172 (174)
T cd04135 159 QKGLKTVFDEAILA 172 (174)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988764
No 139
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=6.9e-19 Score=197.13 Aligned_cols=150 Identities=22% Similarity=0.322 Sum_probs=122.4
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcc--------hhhhhhhcccccc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHA--------AFSAMRKRGAAVT 261 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~--------~f~~~~~~~~~~a 261 (708)
+|+++|+||||||||+|+|++...+. ...+|+|++.....+.+ ++..+.+|||||+. .+......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 48999999999999999999887654 67899999988888888 88999999999973 3444555678999
Q ss_pred cEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|++++|+|+.++....+.+.+..+...++|+++|+||+|+..... ...++... +..+++++||++|.|++
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--~~~~~~~l--------g~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--VAAEFYSL--------GFGEPIPISAEHGRGIG 149 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--cHHHHHhc--------CCCCeEEEeCCcCCChH
Confidence 999999999999999888888888888999999999999864321 11122111 12368999999999999
Q ss_pred hHHHHHHHHH
Q 005218 342 DLEVALLLQA 351 (708)
Q Consensus 342 ~L~~~I~~~~ 351 (708)
+|++.+....
T Consensus 150 ~ll~~i~~~l 159 (429)
T TIGR03594 150 DLLDAILELL 159 (429)
T ss_pred HHHHHHHHhc
Confidence 9999988754
No 140
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.79 E-value=4.3e-19 Score=178.97 Aligned_cols=158 Identities=27% Similarity=0.343 Sum_probs=111.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcc---cccccCceEEeeeEEEEEec--------------------------CC----
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSL---VAKEAGGITQHMGAFVVGMS--------------------------TG---- 236 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~---~~~~~~gtT~di~~~~v~~~--------------------------~g---- 236 (708)
++|+++||.|+|||||+.+|.+... ......+.|.......+.+. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975521 22223444544443332220 03
Q ss_pred --eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC-CChhHHHHHHHhhhcCC-CEEEEEeCCCCCCCCc-chhhh
Q 005218 237 --ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-VMPQTLEAIAHANAANV-PIVVAINKCDKPAADP-ERVKN 311 (708)
Q Consensus 237 --~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g-~~~q~~~~l~~l~~~~~-piIvViNK~Dl~~~~~-~~~~~ 311 (708)
..++|||||||+.|...+..++..+|++++|+|++++ ...++.+.+..+...+. |+++|+||+|+.+... ....+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHH
Confidence 7899999999999988888889999999999999984 56777777777665565 6899999999964211 11112
Q ss_pred hhhhcccchhcc-CCcceEEEEeeecCCCchhHHHHHHHH
Q 005218 312 QLGAEGLELEDW-GGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 312 ~l~~~~~~~~~~-~~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
.+.+. +..+ ....+++++||++|.|+++|+++|...
T Consensus 161 ~i~~~---~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 161 QIKKF---VKGTIAENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred HHHHH---HhccccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 22111 1111 124689999999999999999999764
No 141
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.79 E-value=3.6e-19 Score=178.85 Aligned_cols=157 Identities=21% Similarity=0.172 Sum_probs=108.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhh--------hhhcccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSA--------MRKRGAA 259 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~--------~~~~~~~ 259 (708)
.+|+++|.+|||||||+++|.+.++.....|+++.++....+.+ ++ +.+.||||||++.+.. .+...++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 47999999999999999999998887767777766654444445 45 6788999999765421 1334578
Q ss_pred cccEEEEEEEccCCCChhHHHHH-HHhh------hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEE
Q 005218 260 VTDIVVLVVAADDGVMPQTLEAI-AHAN------AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 260 ~aDivllVvDa~~g~~~q~~~~l-~~l~------~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
.+|++|+|+|+++..+.+....| ..+. ..++|+++|+||+|+....... .+.+.. +......++++++
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~-~~~~~~----~~~~~~~~~~~e~ 154 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP-RHVLSV----LVRKSWKCGYLEC 154 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc-HHHHHH----HHHHhcCCcEEEe
Confidence 99999999999875433322222 2221 3568999999999995421110 111111 1010124689999
Q ss_pred eeecCCCchhHHHHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~~~~ 352 (708)
||++|.|+++||+.+....-
T Consensus 155 Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 155 SAKYNWHILLLFKELLISAT 174 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999987654
No 142
>PTZ00369 Ras-like protein; Provisional
Probab=99.79 E-value=5.1e-19 Score=176.07 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=109.8
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.++|+++|++|+|||||++++.+..+.....+++..++ ...+..+ ....+.+|||||+++|..++..+++.+|++++|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 47999999999999999999998877655545444333 2223332 345688999999999999999999999999999
Q ss_pred EEccCCCChhHHHHH-HHh----hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMPQTLEAI-AHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~q~~~~l-~~l----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|+++....+....| ..+ ...++|+++|+||+|+.....-.. ...... ...+ ..+++++||++|.|+++
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~-~~~~~~---~~~~--~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVST-GEGQEL---AKSF--GIPFLETSAKQRVNVDE 157 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH-HHHHHH---HHHh--CCEEEEeeCCCCCCHHH
Confidence 999875332222221 111 234789999999999854221110 011100 0111 25899999999999999
Q ss_pred HHHHHHHHHH
Q 005218 343 LEVALLLQAE 352 (708)
Q Consensus 343 L~~~I~~~~~ 352 (708)
++++|.+.+.
T Consensus 158 ~~~~l~~~l~ 167 (189)
T PTZ00369 158 AFYELVREIR 167 (189)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 143
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.79 E-value=3.3e-19 Score=170.13 Aligned_cols=166 Identities=20% Similarity=0.211 Sum_probs=126.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
+..++|.|+|.+|||||||+|++.+.++...+..++.-|+....+..+ .-..+.+|||+|+++|..+....++.||+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 345899999999999999999999999988888888888887777773 2357889999999999999999999999999
Q ss_pred EEEEccCCCChhHHHHHHH-----hh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecC
Q 005218 266 LVVAADDGVMPQTLEAIAH-----AN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~l~~-----l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg 337 (708)
+|+|.++.-..+.++.|+. +. ....|+||++||+|+.+.....+... .......-.+++|++++|||.+
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~---~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEK---KAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHH---HHHHHHHhcCCceeEEeccccc
Confidence 9999988655555555532 21 13568999999999965321111110 1111222345789999999999
Q ss_pred CCchhHHHHHHHHHHHcc
Q 005218 338 TGLDDLEVALLLQAEMMN 355 (708)
Q Consensus 338 ~GI~~L~~~I~~~~~~~~ 355 (708)
.|+++.|+.+.+.+...+
T Consensus 164 ~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 164 TNVDEAFEEIARRALANE 181 (210)
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 999999999988765443
No 144
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=1.2e-18 Score=172.47 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=110.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
+..+|+++|.+|+|||||+++|....+. ...|++..++ ..+.. .+..+.+|||||++.+..++..+++.+|++|+|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~-~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 3478999999999999999999876654 3445444443 23455 788999999999999999999999999999999
Q ss_pred EEccCCCC-hhHHHHHHHhh----hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~~-~q~~~~l~~l~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+++... ......+..+. ..++|+++++||+|+.+... +++...+ ++... ......++++||++|+|++
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l---~l~~~-~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL---GLHSL-RQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh---Ccccc-CCCceEEEeccCCCCCCHH
Confidence 99987432 22222333221 14689999999999965322 1112211 11100 0112356789999999999
Q ss_pred hHHHHHHHHH
Q 005218 342 DLEVALLLQA 351 (708)
Q Consensus 342 ~L~~~I~~~~ 351 (708)
+++++|....
T Consensus 168 e~~~~l~~~~ 177 (181)
T PLN00223 168 EGLDWLSNNI 177 (181)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 145
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.79 E-value=1e-18 Score=169.94 Aligned_cols=155 Identities=21% Similarity=0.159 Sum_probs=110.6
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
..+|+++|++|+|||||+++|.+..+.....+.++.++....+..+ ....+.||||||++.+..++..+++.+|++++|
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLT 84 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEE
Confidence 4789999999999999999999888776556666655544444442 345788999999999999999999999999999
Q ss_pred EEccCCCChhHHHHH----HHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 268 VAADDGVMPQTLEAI----AHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 268 vDa~~g~~~q~~~~l----~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
+|.++....+....| .... ..++|+++|+||+|+..... ..++..+.. ..+ +..+++++||++|.|
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~---~~~-~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 85 FAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQV--STEEAQAWC---REN-GDYPYFETSAKDATN 158 (170)
T ss_pred EECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccccc--CHHHHHHHH---HHC-CCCeEEEEECCCCCC
Confidence 999875433322222 1111 24689999999999953211 111111110 111 224789999999999
Q ss_pred chhHHHHHHH
Q 005218 340 LDDLEVALLL 349 (708)
Q Consensus 340 I~~L~~~I~~ 349 (708)
++++++.+.+
T Consensus 159 v~~~~~~~~~ 168 (170)
T cd04116 159 VAAAFEEAVR 168 (170)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 146
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.79 E-value=1e-18 Score=168.35 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=108.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....+.+..++....+.++ .+..+.+|||||++.+...+...++.+|++++|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988766444444444444444442 3467899999999999888888889999999999
Q ss_pred EccCCCChhH-HHHHHHh---hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 269 AADDGVMPQT-LEAIAHA---NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 269 Da~~g~~~q~-~~~l~~l---~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
|+++....+. ...+..+ ...++|+++++||+|+........ ...... ...+ .++++++||++|.|+++++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVST-EEAQEY---ADEN--GLLFFETSAKTGENVNELF 155 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCH-HHHHHH---HHHc--CCEEEEEECCCCCCHHHHH
Confidence 9987432211 1222222 224688999999999864221111 111110 1111 2579999999999999999
Q ss_pred HHHHHH
Q 005218 345 VALLLQ 350 (708)
Q Consensus 345 ~~I~~~ 350 (708)
++|...
T Consensus 156 ~~l~~~ 161 (163)
T cd01860 156 TEIAKK 161 (163)
T ss_pred HHHHHH
Confidence 999875
No 147
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.79 E-value=1e-18 Score=173.47 Aligned_cols=160 Identities=24% Similarity=0.269 Sum_probs=110.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.+..+|+++|++|+|||||+++|.+..+.. ..+ |.......+.+ ++..+.+|||||+..+...+..+++.+|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~--T~~~~~~~i~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVP--TLHPTSEELTI-GNIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCC--ccCcceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 456899999999999999999999876532 222 33333344555 68899999999999998888888899999999
Q ss_pred EEEccCCCC-hhHHHHHHHh----hhcCCCEEEEEeCCCCCCC-Ccchhhhhhhhcccch-------hccCCcceEEEEe
Q 005218 267 VVAADDGVM-PQTLEAIAHA----NAANVPIVVAINKCDKPAA-DPERVKNQLGAEGLEL-------EDWGGKVQVVEVS 333 (708)
Q Consensus 267 VvDa~~g~~-~q~~~~l~~l----~~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~-------~~~~~~~~vi~vS 333 (708)
|+|+++... ......+..+ ...+.|+++++||+|+... +.+.+.+.+....... +.....++++++|
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCS 172 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeE
Confidence 999987421 1122222222 1346899999999999642 2222332222111100 1112345799999
Q ss_pred eecCCCchhHHHHHHHH
Q 005218 334 AVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~ 350 (708)
|++|.|+++++++|...
T Consensus 173 a~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 173 VVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ecCCCChHHHHHHHHhh
Confidence 99999999999999763
No 148
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=6.9e-19 Score=181.62 Aligned_cols=160 Identities=29% Similarity=0.361 Sum_probs=124.8
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccc------------------cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVA------------------KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~------------------~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~ 252 (708)
+|+++||+|+|||||+++|+.....+ ....|+|.+.....+.+ ++.+++|||||||.+|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchHH
Confidence 58999999999999999997643221 12345666666666777 889999999999999999
Q ss_pred hhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcc-c-------------
Q 005218 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEG-L------------- 318 (708)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~-~------------- 318 (708)
.+..+++.+|++++|+|++++...++..++..+...++|+++++||+|+..++.++...++.... .
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~ 159 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPN 159 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeee
Confidence 99999999999999999999999999999998888899999999999998655443333322100 0
Q ss_pred ---------------------chhc---------------------cCCcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 319 ---------------------ELED---------------------WGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 319 ---------------------~~~~---------------------~~~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
.++. .+..+|+++.||.++.|+..|++.|...+
T Consensus 160 ~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 160 ICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred eeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 0000 02347999999999999999999998753
No 149
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.79 E-value=8.5e-19 Score=170.10 Aligned_cols=153 Identities=22% Similarity=0.188 Sum_probs=104.6
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCe-eEEEeeCCCcchh----hhh---hhccccccc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGA-SITFLDTPGHAAF----SAM---RKRGAAVTD 262 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~-~v~liDTpG~~~f----~~~---~~~~~~~aD 262 (708)
+|+++|++|||||||+|+|.+.....+..+++|++.....+.. ++. .+.||||||+.+. ..+ ..+.+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999987765566677777765555555 554 9999999997422 112 223355799
Q ss_pred EEEEEEEccCC-CChhHHHHH-HHhhh-----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeee
Q 005218 263 IVVLVVAADDG-VMPQTLEAI-AHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 263 ivllVvDa~~g-~~~q~~~~l-~~l~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
++++|+|+++. ...+....| +.+.. .++|+++|+||+|+.+... ....+... ... ....+++++||+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~---~~~-~~~~~~~~~Sa~ 154 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE--LFELLKEL---LKE-LWGKPVFPISAL 154 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh--hHHHHHHH---Hhh-CCCCCEEEEecC
Confidence 99999999986 233333222 22221 3689999999999964322 11111111 011 013579999999
Q ss_pred cCCCchhHHHHHHHH
Q 005218 336 KKTGLDDLEVALLLQ 350 (708)
Q Consensus 336 tg~GI~~L~~~I~~~ 350 (708)
+|.|+++++++|.++
T Consensus 155 ~~~gi~~l~~~i~~~ 169 (170)
T cd01898 155 TGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998763
No 150
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.79 E-value=9.1e-19 Score=168.31 Aligned_cols=153 Identities=24% Similarity=0.275 Sum_probs=105.4
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa 270 (708)
+|+++|++|+|||||+++|.+..+... .+++. +....+.......+.+|||||++.+..++..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~--~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG--FNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccC--cceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 489999999999999999998876532 33332 222334443568999999999999988888889999999999999
Q ss_pred cCCCC-hhHHHHHHHh----hhcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 271 DDGVM-PQTLEAIAHA----NAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 271 ~~g~~-~q~~~~l~~l----~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
++... ......+..+ ...+.|+++|+||+|+.... ...+...+..... . .....+++++||++|.|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKY--C-SDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCccc--C-CCCcEEEEecccccCCChHHHH
Confidence 87432 1122222222 12578999999999996422 2222222111111 0 1123579999999999999999
Q ss_pred HHHHH
Q 005218 345 VALLL 349 (708)
Q Consensus 345 ~~I~~ 349 (708)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98864
No 151
>PRK04213 GTP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=174.91 Aligned_cols=156 Identities=24% Similarity=0.375 Sum_probs=107.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCc-----------chhhhhhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH-----------AAFSAMRKR 256 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~-----------~~f~~~~~~ 256 (708)
+.++|+++|++|+|||||+|+|.+..+..+..+|+|++.... .. + .+.+|||||+ +.+..++..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~--~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHY--DW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEE--ee-c--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 457999999999999999999998887777788998875433 33 2 6999999994 344443333
Q ss_pred ----ccccccEEEEEEEccCCC-----------ChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhh-cccch
Q 005218 257 ----GAAVTDIVVLVVAADDGV-----------MPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGA-EGLEL 320 (708)
Q Consensus 257 ----~~~~aDivllVvDa~~g~-----------~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~-~~~~~ 320 (708)
.+..+|++++|+|++... ...+.+++..+...++|+++|+||+|+.+.. .....++.. .+..
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~- 160 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLY- 160 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhcCC-
Confidence 345678999999986421 2234555666666789999999999996433 112222211 1110
Q ss_pred hccC-CcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 321 EDWG-GKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 321 ~~~~-~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
..+. ...+++++||++| |+++++++|....
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 0110 0136899999999 9999999998754
No 152
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.79 E-value=1.1e-18 Score=168.87 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=111.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.+|+++|++|+|||||++++....+.....++++.++....+.. ++ ..+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 37999999999999999999998887666777776665555555 44 5788999999999999888899999999999
Q ss_pred EEccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCcc--hhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPE--RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~~--~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|.++....+.. +.+......+.|+++|+||+|+...... .....+. ..+ ..+++++||++|.|++
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~e~Sa~~~~~v~ 151 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLA------KEY--GMDFFETSACTNSNIK 151 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH------HHc--CCEEEEEeCCCCCCHH
Confidence 999874332222 2222222346899999999999542211 1111111 112 2589999999999999
Q ss_pred hHHHHHHH
Q 005218 342 DLEVALLL 349 (708)
Q Consensus 342 ~L~~~I~~ 349 (708)
++|++|.+
T Consensus 152 ~~f~~l~~ 159 (161)
T cd04117 152 ESFTRLTE 159 (161)
T ss_pred HHHHHHHh
Confidence 99999875
No 153
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.79 E-value=1.3e-18 Score=170.39 Aligned_cols=158 Identities=14% Similarity=0.126 Sum_probs=113.1
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvD 269 (708)
+|+++|++|+|||||+++|.+..+...+.+++..++....+... ....+.||||||++.|..++..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 69999999999999999999988877777777777655545442 24679999999999999999999999999999999
Q ss_pred ccCCCChhHHHH-HHHhhh----cCCCEEEEEeCCCCCCCCcchh-hhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 270 ADDGVMPQTLEA-IAHANA----ANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 270 a~~g~~~q~~~~-l~~l~~----~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+++....+.... +..+.. ...|+++|+||+|+........ ....... ...+ ..+++++||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~---~~~~--~~~~~e~Sa~~g~~v~~l 156 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL---AAEM--QAEYWSVSALSGENVREF 156 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH---HHHc--CCeEEEEECCCCCCHHHH
Confidence 987322222222 222221 2356999999999954321111 1111111 0111 247899999999999999
Q ss_pred HHHHHHHHHH
Q 005218 344 EVALLLQAEM 353 (708)
Q Consensus 344 ~~~I~~~~~~ 353 (708)
++.|...+..
T Consensus 157 f~~l~~~~~~ 166 (170)
T cd04108 157 FFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 154
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=1.4e-18 Score=168.65 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=113.5
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
-++|+++|++|+|||||+++|....+.....++++.+.....+.+ .+ ..+.+|||||++.+...+..++..+|++++
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 478999999999999999999977766555566666665555555 44 568899999999999888889999999999
Q ss_pred EEEccCCCCh----hHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 267 VVAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 267 VvDa~~g~~~----q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+|++++... .+...+..+...+.|+++|+||+|+.... .+...+.. .+... ...+++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~--~i~~~~~~---~~~~~-~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR--EVSQQRAE---EFSDA-QDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--ccCHHHHH---HHHHH-cCCeEEEeeCCCCCCHHH
Confidence 9999875332 23333344444578999999999996422 11111111 01111 125799999999999999
Q ss_pred HHHHHHHH
Q 005218 343 LEVALLLQ 350 (708)
Q Consensus 343 L~~~I~~~ 350 (708)
+++.|...
T Consensus 160 l~~~i~~~ 167 (169)
T cd04114 160 LFLDLACR 167 (169)
T ss_pred HHHHHHHH
Confidence 99998864
No 155
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.79 E-value=9.3e-19 Score=170.80 Aligned_cols=157 Identities=19% Similarity=0.270 Sum_probs=107.7
Q ss_pred EEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEc
Q 005218 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa 270 (708)
|+++|++|+|||||+++|.+..+.....+++...+. ..+.++ ....+.+|||||++.+..++...++.+|++|+|+|.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 589999999999999999998887666565544433 233342 234689999999999998888899999999999999
Q ss_pred cCCCChhHHH--HHHHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhh---------hcccchhccCCcceEEEEeeecC
Q 005218 271 DDGVMPQTLE--AIAHAN--AANVPIVVAINKCDKPAADPERVKNQLG---------AEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 271 ~~g~~~q~~~--~l~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~---------~~~~~~~~~~~~~~vi~vSAktg 337 (708)
++....+... .+..+. ..++|+++|+||+|+.... .. ...+. +....+....+..+++++||++|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDK-ST-LRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ 157 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhCh-hh-hhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence 8743222221 122222 2479999999999996421 10 00000 00011111122347999999999
Q ss_pred CCchhHHHHHHHHH
Q 005218 338 TGLDDLEVALLLQA 351 (708)
Q Consensus 338 ~GI~~L~~~I~~~~ 351 (708)
.|++++++.+...+
T Consensus 158 ~~v~~lf~~l~~~~ 171 (174)
T smart00174 158 EGVREVFEEAIRAA 171 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999988753
No 156
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=1.3e-18 Score=195.37 Aligned_cols=149 Identities=23% Similarity=0.339 Sum_probs=119.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcch--------hhhhhhccccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA--------FSAMRKRGAAV 260 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~--------f~~~~~~~~~~ 260 (708)
++|+++|+||||||||+|+|.+...+ ....+|+|++.....+.+ ++..+.+|||||+.. +......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 68999999999999999999988765 477889999988888887 789999999999876 22223456789
Q ss_pred ccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 261 aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
+|++|+|+|++++....+.+....+...++|+++|+||+|+.+. +....++...+ ...++++||++|.|+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~--~~~~~~~~~lg--------~~~~~~iSa~~g~gv 150 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE--EADAYEFYSLG--------LGEPYPISAEHGRGI 150 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc--hhhHHHHHhcC--------CCCCEEEEeeCCCCH
Confidence 99999999999988887777778888889999999999997531 11111111111 124789999999999
Q ss_pred hhHHHHHHH
Q 005218 341 DDLEVALLL 349 (708)
Q Consensus 341 ~~L~~~I~~ 349 (708)
++|++.|..
T Consensus 151 ~~l~~~I~~ 159 (435)
T PRK00093 151 GDLLDAILE 159 (435)
T ss_pred HHHHHHHHh
Confidence 999999987
No 157
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.79 E-value=1.8e-18 Score=166.47 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=109.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....+.++.++....+.+. ....+.+|||||++.+..+....++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 479999999999999999999887765455555544443333342 3467999999999999888888899999999999
Q ss_pred EccCCCChhHHHHH-H----HhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 269 AADDGVMPQTLEAI-A----HANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 269 Da~~g~~~q~~~~l-~----~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|+++....+....| . .....+.|+++|+||+|+....... +...... .. ..++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~--~~~~~~~---~~--~~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTR--EEGLKFA---RK--HNMLFIETSAKTRDGVQQA 153 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCH--HHHHHHH---HH--cCCEEEEEecCCCCCHHHH
Confidence 99874433333222 1 1224578999999999996322111 1111110 01 1368999999999999999
Q ss_pred HHHHHH
Q 005218 344 EVALLL 349 (708)
Q Consensus 344 ~~~I~~ 349 (708)
++.+..
T Consensus 154 ~~~~~~ 159 (161)
T cd01863 154 FEELVE 159 (161)
T ss_pred HHHHHH
Confidence 998875
No 158
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=9.6e-19 Score=186.15 Aligned_cols=158 Identities=23% Similarity=0.294 Sum_probs=118.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchh--------hhhhhccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF--------SAMRKRGA 258 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f--------~~~~~~~~ 258 (708)
+...|+++|+||||||||+|+|++..... +..+.+|++........ ++..+.|+||||+... .......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 45679999999999999999999988765 67788888766555544 6689999999996432 22333467
Q ss_pred ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 259 ~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
..+|++++|+|++++........+..+...+.|+++|+||+|+... .......+... .......+++++||++|.
T Consensus 83 ~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~-~~~l~~~~~~l----~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD-KEELLPLLEEL----SELMDFAEIVPISALKGD 157 (292)
T ss_pred hcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC-HHHHHHHHHHH----HhhCCCCeEEEecCCCCC
Confidence 8999999999999877766667777777668999999999999631 12222222211 111224579999999999
Q ss_pred CchhHHHHHHHHH
Q 005218 339 GLDDLEVALLLQA 351 (708)
Q Consensus 339 GI~~L~~~I~~~~ 351 (708)
|+++|+++|...+
T Consensus 158 gv~~L~~~L~~~l 170 (292)
T PRK00089 158 NVDELLDVIAKYL 170 (292)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998764
No 159
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.78 E-value=1.8e-18 Score=173.67 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=113.4
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.++|+++|++|+|||||+++|.+..+.....++++.++....+.++ ....+.||||||++.|..++..+++.+|++++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 4799999999999999999999888766566666656554555542 235788999999999999999999999999999
Q ss_pred EEccCCCChhHHH-HHHHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 268 VAADDGVMPQTLE-AIAHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 268 vDa~~g~~~q~~~-~l~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
+|+++....+... .+..+. ....|+++|+||+|+....... ........ ..+ ..+++++||++|.|+++++
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~-~~~~~~~~---~~~--~~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE-TEDAYKFA---GQM--GISLFETSAKENINVEEMF 159 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC-HHHHHHHH---HHc--CCEEEEEECCCCcCHHHHH
Confidence 9998743322222 222222 2368999999999996432111 11111100 111 2589999999999999999
Q ss_pred HHHHHHHH
Q 005218 345 VALLLQAE 352 (708)
Q Consensus 345 ~~I~~~~~ 352 (708)
++|...+.
T Consensus 160 ~~l~~~~~ 167 (199)
T cd04110 160 NCITELVL 167 (199)
T ss_pred HHHHHHHH
Confidence 99987653
No 160
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=1.3e-18 Score=170.70 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=108.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
...+|+++|++|+|||||+++|....+.. ..+++..++ ..+.. ++..+.||||||++.|...+..+++.+|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVY-KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEE-CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 34789999999999999999998776643 233333333 33444 678999999999999998888889999999999
Q ss_pred EEccCCCCh-hHHHHHHHhh----hcCCCEEEEEeCCCCCCC-CcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGVMP-QTLEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~~~-q~~~~l~~l~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+++.... ...+.+..+. ..++|+++++||+|+... +.+++.+.+.... .. ...++++++||++|.|++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~--~~--~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTS--IR--DHTWHIQGCCALTGEGLP 165 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccc--cc--CCceEEEecccCCCCCHH
Confidence 999874321 1222232221 136899999999999653 2222222221110 01 123579999999999999
Q ss_pred hHHHHHHH
Q 005218 342 DLEVALLL 349 (708)
Q Consensus 342 ~L~~~I~~ 349 (708)
+++++|..
T Consensus 166 e~~~~l~~ 173 (174)
T cd04153 166 EGLDWIAS 173 (174)
T ss_pred HHHHHHhc
Confidence 99999864
No 161
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.78 E-value=1.6e-18 Score=176.93 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=114.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
...++|+++|++|+|||||+++++...+.....+++..++....+..+ ....+.+|||||++.|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 355799999999999999999998887766555655555544444332 3478999999999999999988999999999
Q ss_pred EEEEccCCCChhHHHHH-HHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 266 LVVAADDGVMPQTLEAI-AHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~l-~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|||.++....+....| ..+. ..++|+++|+||+|+...... ...+ . +.. ...++++++||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~--~~~~-~----~~~-~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-T----FHR-KKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCC--HHHH-H----HHH-hcCCEEEEcCCCCCCCHHH
Confidence 99999985443333222 1111 257899999999999532211 1111 1 111 1235899999999999999
Q ss_pred HHHHHHHHH
Q 005218 343 LEVALLLQA 351 (708)
Q Consensus 343 L~~~I~~~~ 351 (708)
+|++|...+
T Consensus 163 ~f~~l~~~~ 171 (219)
T PLN03071 163 PFLYLARKL 171 (219)
T ss_pred HHHHHHHHH
Confidence 999998765
No 162
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.78 E-value=9.6e-19 Score=178.46 Aligned_cols=159 Identities=17% Similarity=0.134 Sum_probs=109.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvD 269 (708)
.+|+++|.+|+|||||+++|....+.. ..+++..++. ...+ ..+.+.||||||++.|..++..+++.+|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~--~~~~-~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFY--LKQW-GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEE--EEEe-eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 479999999999999999999888753 3444443432 2233 56789999999999999999999999999999999
Q ss_pred ccCCCChhHHH-HHHHhh---hcCCCEEEEEeCCCCCCCCc--------ch------hhhhhhhcccchh-ccC------
Q 005218 270 ADDGVMPQTLE-AIAHAN---AANVPIVVAINKCDKPAADP--------ER------VKNQLGAEGLELE-DWG------ 324 (708)
Q Consensus 270 a~~g~~~q~~~-~l~~l~---~~~~piIvViNK~Dl~~~~~--------~~------~~~~l~~~~~~~~-~~~------ 324 (708)
+++....+... .|..+. ..++|+|+|+||+||..... .. ......+.+..+. .++
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 99854333332 222222 34689999999999964110 00 0000000111111 111
Q ss_pred ------CcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 325 ------GKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 325 ------~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
..++++++||++|.||+++|+.+...+.
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1258999999999999999999987654
No 163
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.78 E-value=9.5e-19 Score=167.99 Aligned_cols=151 Identities=25% Similarity=0.303 Sum_probs=105.8
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa 270 (708)
+|+++|++|+|||||+++|.+.... ...+++ .+....+.+ .+..+.+|||||++.+...+...+..+|++++|+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~--~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTI--GFNVETVEY-KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCc--CcceEEEEE-CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 5899999999999999999987732 222222 222333444 678999999999999988888888999999999999
Q ss_pred cCCC-ChhHHHHHHH----hhhcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 271 DDGV-MPQTLEAIAH----ANAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 271 ~~g~-~~q~~~~l~~----l~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
+++. .......+.. ....+.|+++++||+|+.... .+++.+.+.... ......+++++||++|.|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK----ILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh----ccCCcEEEEEeeCCCCCCHHHHH
Confidence 8742 1122222222 223578999999999996432 122222221110 11224689999999999999999
Q ss_pred HHHHH
Q 005218 345 VALLL 349 (708)
Q Consensus 345 ~~I~~ 349 (708)
++|..
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 98864
No 164
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.78 E-value=1e-18 Score=168.59 Aligned_cols=153 Identities=22% Similarity=0.237 Sum_probs=107.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.+|+++|.+|+|||||++++....+.....+++ .+.....+.. ++ ..+.||||||++.|..++..+++.+|++++|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch-hheEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 589999999999999999999887765544433 2333334444 33 4678999999999999999999999999999
Q ss_pred EEccCCCChhHHHH-HHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMPQTLEA-IAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~q~~~~-l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|.++....+.... +..+. ..++|+++|+||+|+........ ...... ...+ ..+++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSS-AEGRAL---AEEW--GCPFMETSAKSKTMVNE 153 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCH-HHHHHH---HHHh--CCEEEEecCCCCCCHHH
Confidence 99988432222222 22222 25789999999999854211110 011100 0112 25899999999999999
Q ss_pred HHHHHHHH
Q 005218 343 LEVALLLQ 350 (708)
Q Consensus 343 L~~~I~~~ 350 (708)
++++|...
T Consensus 154 l~~~l~~~ 161 (163)
T cd04176 154 LFAEIVRQ 161 (163)
T ss_pred HHHHHHHh
Confidence 99998763
No 165
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.78 E-value=1.6e-18 Score=174.29 Aligned_cols=151 Identities=23% Similarity=0.329 Sum_probs=107.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcch---------hhhhhhccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA---------FSAMRKRGA 258 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~---------f~~~~~~~~ 258 (708)
.-++|+|+|++|||||||+|+|.+........+++|.+.....+.+.++..+.||||||+.+ +.... ..+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~ 118 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEV 118 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence 34799999999999999999999987665555677777666666663445899999999732 11111 235
Q ss_pred ccccEEEEEEEccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEee
Q 005218 259 AVTDIVVLVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 259 ~~aDivllVvDa~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSA 334 (708)
..+|++++|+|++++...... +.+..+...++|+++|+||+|+..... .... ......+++++||
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~--~~~~---------~~~~~~~~~~~Sa 187 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE--LEER---------LEAGRPDAVFISA 187 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH--HHHH---------hhcCCCceEEEEc
Confidence 689999999999986544333 333333334689999999999964321 1100 0112457999999
Q ss_pred ecCCCchhHHHHHHHH
Q 005218 335 VKKTGLDDLEVALLLQ 350 (708)
Q Consensus 335 ktg~GI~~L~~~I~~~ 350 (708)
++|.|+++++++|...
T Consensus 188 ~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 188 KTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998753
No 166
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=2.2e-18 Score=170.69 Aligned_cols=156 Identities=20% Similarity=0.199 Sum_probs=109.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
+..+|+++|++|+|||||++++....+.. ..|++..++ ..+.. .+..+.+|||||++.+..++..+++.+|++|+|
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEY-KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 45789999999999999999997665543 344444333 33445 778999999999999999999999999999999
Q ss_pred EEccCCC-ChhHHHHHHHhh-h---cCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGV-MPQTLEAIAHAN-A---ANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~-~~q~~~~l~~l~-~---~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+++.. .......+..+. . .+.|+++|+||.|+.+... +++...+ +... .....++++++||++|.|++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l---~~~~-~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKL---GLHS-VRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHh---CCCc-ccCCcEEEEeeeCCCCCCHH
Confidence 9998632 122222333222 1 3689999999999964321 2222222 1110 00123467799999999999
Q ss_pred hHHHHHHHHH
Q 005218 342 DLEVALLLQA 351 (708)
Q Consensus 342 ~L~~~I~~~~ 351 (708)
+++++|....
T Consensus 168 e~~~~l~~~i 177 (182)
T PTZ00133 168 EGLDWLSANI 177 (182)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 167
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.78 E-value=1.8e-18 Score=168.89 Aligned_cols=154 Identities=21% Similarity=0.164 Sum_probs=106.3
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa 270 (708)
+|+++|.+|+|||||+++|.+..+. ...+++..++ ..+.. .+..+.+|||||++.+..++..+++.+|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~--~~~~~-~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNV--ETVEY-KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeE--EEEEE-CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 5899999999999999999987553 2333333333 34455 788999999999999988888889999999999999
Q ss_pred cCCCC-hhHHHHHHHhh----hcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 271 DDGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 271 ~~g~~-~q~~~~l~~l~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
++... ......+..+. ..+.|+++|+||+|+.+.. .++..+.+...... ......++++||++|.|+++++
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLC---CGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCcccc---CCCcEEEEeCcCCCCCCHHHHH
Confidence 87421 12222222222 2357999999999996431 12222221111100 1112468899999999999999
Q ss_pred HHHHHHH
Q 005218 345 VALLLQA 351 (708)
Q Consensus 345 ~~I~~~~ 351 (708)
++|.+..
T Consensus 154 ~~l~~~~ 160 (169)
T cd04158 154 DWLSRQL 160 (169)
T ss_pred HHHHHHH
Confidence 9998653
No 168
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.78 E-value=1.6e-18 Score=171.90 Aligned_cols=159 Identities=22% Similarity=0.222 Sum_probs=111.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.+.++|+++|.+|||||||+++|.+..+.. ..+ |.+.....+.. ++.++.+|||||+..+..++..++..+|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQP--TQHPTSEELAI-GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCC--ccccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 456899999999999999999999876543 222 33333344455 78899999999999998888899999999999
Q ss_pred EEEccCCCC-hhHHHHHHHhh----hcCCCEEEEEeCCCCCCC-Ccchhhhhhhhcccch---hccCCcceEEEEeeecC
Q 005218 267 VVAADDGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLEL---EDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 267 VvDa~~g~~-~q~~~~l~~l~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~---~~~~~~~~vi~vSAktg 337 (708)
|+|+++... ......+..+. ..++|+++|+||+|+... +.+++.+.+....... ........++++||++|
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~ 170 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRR 170 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccC
Confidence 999987421 12222232221 257899999999999643 3334443332111100 00112456999999999
Q ss_pred CCchhHHHHHHH
Q 005218 338 TGLDDLEVALLL 349 (708)
Q Consensus 338 ~GI~~L~~~I~~ 349 (708)
.|+++++++|..
T Consensus 171 ~g~~~~~~wl~~ 182 (184)
T smart00178 171 MGYGEGFKWLSQ 182 (184)
T ss_pred CChHHHHHHHHh
Confidence 999999999975
No 169
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.78 E-value=1.3e-18 Score=178.10 Aligned_cols=158 Identities=30% Similarity=0.368 Sum_probs=114.4
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccc--------------cCceEEeeeE------------------------EEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKE--------------AGGITQHMGA------------------------FVVG 232 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~--------------~~gtT~di~~------------------------~~v~ 232 (708)
+|+++|++++|||||+++|....+.... ..|.|..+.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999864432110 1233332111 1122
Q ss_pred ecCCeeEEEeeCCCcchhhhhhhcccc--cccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCC-cchh
Q 005218 233 MSTGASITFLDTPGHAAFSAMRKRGAA--VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERV 309 (708)
Q Consensus 233 ~~~g~~v~liDTpG~~~f~~~~~~~~~--~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~-~~~~ 309 (708)
. .+..++|+|||||+.|.....+++. .+|++++|+|++++..+++.+++..+...++|+++|+||+|+.+.+ ....
T Consensus 81 ~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~ 159 (224)
T cd04165 81 K-SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQET 159 (224)
T ss_pred e-CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHH
Confidence 2 5788999999999999877776664 7999999999999999999999999999999999999999986422 1122
Q ss_pred hhhhhhccc----c-----------------hhccCCcceEEEEeeecCCCchhHHHHHHH
Q 005218 310 KNQLGAEGL----E-----------------LEDWGGKVQVVEVSAVKKTGLDDLEVALLL 349 (708)
Q Consensus 310 ~~~l~~~~~----~-----------------~~~~~~~~~vi~vSAktg~GI~~L~~~I~~ 349 (708)
...+..... . ...+...+|+|++||.+|.|+++|.+.|..
T Consensus 160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 222221110 0 012344569999999999999999988865
No 170
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.78 E-value=2.1e-18 Score=165.19 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=111.3
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....++++.++....+... ....+.+|||||++.+..++...++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 479999999999999999999888766555566566555555542 2357899999999999888888889999999999
Q ss_pred EccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 269 AADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 269 Da~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
|++++...+.. +.+......++|+++|+||+|+....... .+.+... ...+ ..+++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVS-KSEAEEY---AKSV--GAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC-HHHHHHH---HHHc--CCEEEEEeCCCCCCHHHHH
Confidence 99875433222 22333333478999999999996422110 1111110 0111 3578999999999999999
Q ss_pred HHHHHH
Q 005218 345 VALLLQ 350 (708)
Q Consensus 345 ~~I~~~ 350 (708)
++|...
T Consensus 155 ~~l~~~ 160 (162)
T cd04123 155 LSLAKR 160 (162)
T ss_pred HHHHHH
Confidence 998764
No 171
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.78 E-value=1.5e-18 Score=170.64 Aligned_cols=159 Identities=19% Similarity=0.237 Sum_probs=107.8
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
++|+++|.+|+|||||+.++....+...+.+++. +.....+..+ ....+.||||||++.|..++..+++.+|++|+|+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 5899999999999999999998877655555443 2222233331 2367889999999999999888999999999999
Q ss_pred EccCCCChhHHH-HH-HHhh--hcCCCEEEEEeCCCCCCCCc--chhhhh----h-hhcccchhccCCcceEEEEeeecC
Q 005218 269 AADDGVMPQTLE-AI-AHAN--AANVPIVVAINKCDKPAADP--ERVKNQ----L-GAEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 269 Da~~g~~~q~~~-~l-~~l~--~~~~piIvViNK~Dl~~~~~--~~~~~~----l-~~~~~~~~~~~~~~~vi~vSAktg 337 (708)
|.++..+.+... .| ..+. ..+.|+++|+||+|+.+... +..... + .+.+..+....+..+++++||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 998854333331 12 2222 24689999999999953211 001000 0 000111111122358999999999
Q ss_pred CCchhHHHHHHH
Q 005218 338 TGLDDLEVALLL 349 (708)
Q Consensus 338 ~GI~~L~~~I~~ 349 (708)
.|++++++.+..
T Consensus 161 ~~i~~~f~~l~~ 172 (174)
T cd01871 161 KGLKTVFDEAIR 172 (174)
T ss_pred CCHHHHHHHHHH
Confidence 999999998875
No 172
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.78 E-value=3.1e-18 Score=170.56 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=109.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.+|+++|++|+|||||+++|.+..+.. ...+++..++....+.. ++ ..+.+|||||++.+..++..+++.+|++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 479999999999999999999888765 34444444444444555 44 456799999999998888888899999999
Q ss_pred EEEccCCCChhHH-HHHHHhh--hcCCCEEEEEeCCCCCCCCcc--hhh-hhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMPQTL-EAIAHAN--AANVPIVVAINKCDKPAADPE--RVK-NQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~q~~-~~l~~l~--~~~~piIvViNK~Dl~~~~~~--~~~-~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++....+.. ..+..+. ..+.|+++|+||+|+...... .+. ..+... ...+ ..+++++||++|.|+
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~Sa~~~~gv 154 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDF---ADEI--KAQHFETSSKTGQNV 154 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHH---HHHc--CCeEEEEeCCCCCCH
Confidence 9999874332222 2222222 236899999999998643211 110 111110 0111 257899999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++|+++|.+.+.
T Consensus 155 ~~l~~~i~~~~~ 166 (193)
T cd04118 155 DELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999999997663
No 173
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=2.9e-18 Score=170.17 Aligned_cols=155 Identities=18% Similarity=0.192 Sum_probs=112.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
++|+++|++|+|||||+++|.+..+.....++++.++....+.++ ....+.+|||||++.+..++...++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 479999999999999999999988876566666666554555542 2357789999999999989999999999999999
Q ss_pred EccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCc-c-hhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 269 AADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADP-E-RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 269 Da~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~-~-~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+++....... ..+......+.|+++++||+|+.+... . .....+. .. ..++++++||++|.|+++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~------~~--~~~~~~evSa~~~~~i~~ 152 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFC------DS--LNIPFFETSAKQSINVEE 152 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHH------HH--cCCeEEEEeCCCCCCHHH
Confidence 99874332222 222222234689999999999963221 0 1111111 11 124899999999999999
Q ss_pred HHHHHHHHHH
Q 005218 343 LEVALLLQAE 352 (708)
Q Consensus 343 L~~~I~~~~~ 352 (708)
++++|...+.
T Consensus 153 ~f~~l~~~~~ 162 (188)
T cd04125 153 AFILLVKLII 162 (188)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 174
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.78 E-value=2.1e-18 Score=171.06 Aligned_cols=161 Identities=15% Similarity=0.187 Sum_probs=111.7
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
..+|+++|++++|||||++++....+.....|++..++. ..+..+ ....+.||||+|++.|..++..+++.+|++++|
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilv 83 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 83 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEE
Confidence 468999999999999999999998887666666654443 233342 346789999999999999999999999999999
Q ss_pred EEccCCCChhHH-HHH-HHhh--hcCCCEEEEEeCCCCCCCCcc-------hhhhhhhhcccchhccCCcceEEEEeeec
Q 005218 268 VAADDGVMPQTL-EAI-AHAN--AANVPIVVAINKCDKPAADPE-------RVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 268 vDa~~g~~~q~~-~~l-~~l~--~~~~piIvViNK~Dl~~~~~~-------~~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
+|.++..+.+.. ..| ..+. ..+.|+|+|+||+||...... +......+.+..+....+..++++|||++
T Consensus 84 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~ 163 (182)
T cd04172 84 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 163 (182)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCC
Confidence 999885443332 222 2222 246899999999999531100 00000011122222222224899999999
Q ss_pred CCC-chhHHHHHHHH
Q 005218 337 KTG-LDDLEVALLLQ 350 (708)
Q Consensus 337 g~G-I~~L~~~I~~~ 350 (708)
|.| ++++|+.+.+.
T Consensus 164 ~~n~v~~~F~~~~~~ 178 (182)
T cd04172 164 SENSVRDIFHVATLA 178 (182)
T ss_pred CCCCHHHHHHHHHHH
Confidence 998 99999988764
No 175
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.78 E-value=2.1e-18 Score=165.82 Aligned_cols=155 Identities=21% Similarity=0.243 Sum_probs=107.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|.+|+|||||+++|....+.....+.+ .+........+ ....+.+|||||+..+..++...++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTK-ADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcc-hhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 479999999999999999999877654444333 33333333332 3467999999999999999999999999999999
Q ss_pred EccCCCC----hhHHHHHHHh-hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 269 AADDGVM----PQTLEAIAHA-NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 269 Da~~g~~----~q~~~~l~~l-~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|.++... ..+...+... ...++|+++|+||+|+........ ...... ...+ ..+++++||++|.|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSS-EEAANL---ARQW--GVPYVETSAKTRQNVEKA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCH-HHHHHH---HHHh--CCeEEEeeCCCCCCHHHH
Confidence 9876322 1222222222 135799999999999965211110 111100 1111 258999999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
++.|..+.
T Consensus 154 ~~~l~~~~ 161 (164)
T cd04139 154 FYDLVREI 161 (164)
T ss_pred HHHHHHHH
Confidence 99998754
No 176
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=2.6e-18 Score=169.75 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=110.8
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++++|||||+++|.+..+.....|++..++. ..+.++ ....+.+|||||++.|..++..+++.+|++|+|+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999998887666666655543 234442 3467889999999999999999999999999999
Q ss_pred EccCCCChhHH-HHH-HHhh--hcCCCEEEEEeCCCCCCCCcchh--------hhhhhhcccchhccCCcceEEEEeeec
Q 005218 269 AADDGVMPQTL-EAI-AHAN--AANVPIVVAINKCDKPAADPERV--------KNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 269 Da~~g~~~q~~-~~l-~~l~--~~~~piIvViNK~Dl~~~~~~~~--------~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
|.++..+.+.. ..| ..+. ..+.|+++|+||+||.+.. ... .....+.+..+....+..+++++||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99885443332 222 2222 2478999999999995310 000 000011111222222224799999999
Q ss_pred CCC-chhHHHHHHHH
Q 005218 337 KTG-LDDLEVALLLQ 350 (708)
Q Consensus 337 g~G-I~~L~~~I~~~ 350 (708)
|.| ++++|+.+.+.
T Consensus 160 ~~~~v~~~F~~~~~~ 174 (178)
T cd04131 160 SEKSVRDIFHVATMA 174 (178)
T ss_pred CCcCHHHHHHHHHHH
Confidence 995 99999988773
No 177
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.78 E-value=3.7e-18 Score=164.75 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=108.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcC--cccccccCceEEeeeEEEEEec--CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQT--SLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~--~~~~~~~~gtT~di~~~~v~~~--~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
++|+++|.+|+|||||+++|... .+.....+++..++....+... ....+.+|||||++.+..++...++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 47999999999999999999864 4544555666556544444442 4478999999999999999888999999999
Q ss_pred EEEEccCCCChhHHHHH-HHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 266 LVVAADDGVMPQTLEAI-AHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~l-~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|+|.++.........| ..+.. .+.|+++|+||+|+.+...... ...... ... ...+++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~---~~~--~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTD-AQAQAF---AQA--NQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCH-HHHHHH---HHH--cCCeEEEEeCCCCCChHH
Confidence 99999874322222222 22221 4689999999999954321110 010000 011 125799999999999999
Q ss_pred HHHHHHHH
Q 005218 343 LEVALLLQ 350 (708)
Q Consensus 343 L~~~I~~~ 350 (708)
+++.|.+.
T Consensus 155 l~~~l~~~ 162 (164)
T cd04101 155 PFESLARA 162 (164)
T ss_pred HHHHHHHH
Confidence 99998875
No 178
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.78 E-value=4.4e-18 Score=166.05 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=111.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhh-hhhhcccccccEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFS-AMRKRGAAVTDIVVL 266 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~-~~~~~~~~~aDivll 266 (708)
-.+|+++|++|+|||||+++|+...+.....++++.++....+.++ ....+.+|||||++.|. .++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4689999999999999999999887766566666666655555552 23689999999999886 467778899999999
Q ss_pred EEEccCCCChhHHHHHH-Hhh----hcCCCEEEEEeCCCCCCCCc--chhhhhhhhcccchhccCCcceEEEEeeec---
Q 005218 267 VVAADDGVMPQTLEAIA-HAN----AANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVK--- 336 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l~-~l~----~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt--- 336 (708)
|+|++++...+....|. .+. ..++|+++|+||+|+..... ......+. .. ...+++++||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~e~Sa~~~~~ 153 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA------DA--HSMPLFETSAKDPSE 153 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH------HH--cCCcEEEEeccCCcC
Confidence 99999865544443332 222 24689999999999964221 11111111 11 136899999999
Q ss_pred CCCchhHHHHHHHHH
Q 005218 337 KTGLDDLEVALLLQA 351 (708)
Q Consensus 337 g~GI~~L~~~I~~~~ 351 (708)
+.|+++++..+....
T Consensus 154 ~~~i~~~f~~l~~~~ 168 (170)
T cd04115 154 NDHVEAIFMTLAHKL 168 (170)
T ss_pred CCCHHHHHHHHHHHh
Confidence 888888888877643
No 179
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.77 E-value=3e-18 Score=167.14 Aligned_cols=154 Identities=23% Similarity=0.217 Sum_probs=107.4
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa 270 (708)
+|+++|.+|+|||||+++|.+. +.....+++. .....+.. ++..+.+|||||+..+..++..+++.+|++++|+|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g--~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVG--FTPTKLRL-DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCccc--ceEEEEEE-CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999876 3323333222 22334455 788999999999999999999999999999999999
Q ss_pred cCCCChh-HHHHHHHhhh----cCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecC------C
Q 005218 271 DDGVMPQ-TLEAIAHANA----ANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKK------T 338 (708)
Q Consensus 271 ~~g~~~q-~~~~l~~l~~----~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg------~ 338 (708)
++....+ ....+..+.. .++|+++|+||+|+.+.. ..++.+.+....+ .......++++++||++| .
T Consensus 77 s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~-~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 77 SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKL-VNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccc-cCCCCceEEEEEeEceeCCCCcccc
Confidence 8743222 2223333321 478999999999997543 2223333221111 111223457899999998 8
Q ss_pred CchhHHHHHHH
Q 005218 339 GLDDLEVALLL 349 (708)
Q Consensus 339 GI~~L~~~I~~ 349 (708)
|+++.++||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999863
No 180
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=2.5e-18 Score=168.13 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=111.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDI 263 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDi 263 (708)
++.++|+++|.+|+|||||+++|++..+. ..+.|++..++....+.+ ++ ..+.+|||+|.+.+..++..+++.+|+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 45679999999999999999999998887 566666555554444555 44 578899999999998888888999999
Q ss_pred EEEEEEccCCCChhHH-HHHHHhh-hcCCCEEEEEeCCCCCCCCcc--hhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 264 VVLVVAADDGVMPQTL-EAIAHAN-AANVPIVVAINKCDKPAADPE--RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 264 vllVvDa~~g~~~q~~-~~l~~l~-~~~~piIvViNK~Dl~~~~~~--~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
+++|+|+++....+.. +.+..+. ..++|+++|+||+|+.+.... ...+.+. ..+ +..+++++||++|.|
T Consensus 81 ~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~------~~~-~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 81 ACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFC------RKL-GLPPPLHFSSKLGDS 153 (169)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHH------HHc-CCCCCEEEEeccCcc
Confidence 9999999874222222 2222221 237899999999999542211 0001111 111 112468999999999
Q ss_pred chhHHHHHHHHH
Q 005218 340 LDDLEVALLLQA 351 (708)
Q Consensus 340 I~~L~~~I~~~~ 351 (708)
++++++.|...+
T Consensus 154 v~~lf~~l~~~~ 165 (169)
T cd01892 154 SNELFTKLATAA 165 (169)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 181
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.77 E-value=3.8e-18 Score=162.09 Aligned_cols=152 Identities=22% Similarity=0.258 Sum_probs=109.5
Q ss_pred EEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEcc
Q 005218 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAAD 271 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~ 271 (708)
|+++|++|+|||||+++|.+..+.....++++.++. .+.. ++..+.+|||||++.+..++..++..+|++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTK-GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEE-CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 799999999999999999998887666666655443 3344 6689999999999999999889999999999999998
Q ss_pred CCCC-hhHHHHHHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHH
Q 005218 272 DGVM-PQTLEAIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (708)
Q Consensus 272 ~g~~-~q~~~~l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~ 346 (708)
+... .+....+..+. ..++|+++|+||+|+.+... ............ ......+++++||++|.|+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKS-ITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCccc-ccCCceEEEEEEeccCCChHHHHHH
Confidence 6321 22222333322 24789999999999864321 111111111110 1122468999999999999999999
Q ss_pred HHH
Q 005218 347 LLL 349 (708)
Q Consensus 347 I~~ 349 (708)
|..
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 864
No 182
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.77 E-value=2.7e-18 Score=167.09 Aligned_cols=156 Identities=24% Similarity=0.290 Sum_probs=108.3
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|.+|+|||||+++|.+..+.....+.+. +.....+.++ ....+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 5799999999999999999998877544444333 2223333332 3367899999999999999999999999999999
Q ss_pred EccCCCChhHH----HHHHH-hhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 269 AADDGVMPQTL----EAIAH-ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 269 Da~~g~~~q~~----~~l~~-l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|.++....+.. ..+.. ....++|+++++||+|+........ +..... ...+ +..+++++||++|.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~-~~~~~~---~~~~-~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR-EDGVSL---SQQW-GNVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCH-HHHHHH---HHHc-CCceEEEeeCCCCCCHHHH
Confidence 99874322222 22222 2235789999999999964321111 111100 1122 2368999999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
+++|..++
T Consensus 156 f~~i~~~~ 163 (168)
T cd04177 156 FIDLVRQI 163 (168)
T ss_pred HHHHHHHH
Confidence 99998643
No 183
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.77 E-value=2.4e-18 Score=168.02 Aligned_cols=159 Identities=19% Similarity=0.274 Sum_probs=107.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....+++...+. ..+.++ ....+.+|||||++.+..++..++..+|++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 57999999999999999999998876555554443332 233342 3357899999999999888888889999999999
Q ss_pred EccCCCChhHH-HHH-HHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhh---------hcccchhccCCcceEEEEeee
Q 005218 269 AADDGVMPQTL-EAI-AHAN--AANVPIVVAINKCDKPAADPERVKNQLG---------AEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 269 Da~~g~~~q~~-~~l-~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~---------~~~~~~~~~~~~~~vi~vSAk 335 (708)
|+++....+.. ..| ..+. ..++|+++|+||+|+..... ....+. ..+..+....+..+++++||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH--TRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh--hhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 99863222222 111 1122 24789999999999864211 111110 001111111123579999999
Q ss_pred cCCCchhHHHHHHHHH
Q 005218 336 KKTGLDDLEVALLLQA 351 (708)
Q Consensus 336 tg~GI~~L~~~I~~~~ 351 (708)
+|.|+++++++|...+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998643
No 184
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=2.5e-18 Score=166.83 Aligned_cols=159 Identities=20% Similarity=0.273 Sum_probs=106.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
++|+++|++|+|||||+++|.+..+.....+.+...... ....+ ....+.+|||||++.+...+...++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSA-TVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 479999999999999999999988755444444333222 22331 3567999999999988877777889999999999
Q ss_pred EccCCCChhHH-H-HHHHhh--hcCCCEEEEEeCCCCCCCCcchhh-----hhh-hhcccchhccCCcceEEEEeeecCC
Q 005218 269 AADDGVMPQTL-E-AIAHAN--AANVPIVVAINKCDKPAADPERVK-----NQL-GAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 269 Da~~g~~~q~~-~-~l~~l~--~~~~piIvViNK~Dl~~~~~~~~~-----~~l-~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
|+++....+.. . .+..+. ..++|+++|+||+|+......... ..+ ...........+..+++++||++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 99873322221 1 122222 236999999999999654321100 000 0111111112223489999999999
Q ss_pred CchhHHHHHHH
Q 005218 339 GLDDLEVALLL 349 (708)
Q Consensus 339 GI~~L~~~I~~ 349 (708)
|++++++.|.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999998864
No 185
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.4e-18 Score=168.84 Aligned_cols=161 Identities=17% Similarity=0.156 Sum_probs=126.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
....++|+++|.++||||+|+.++....+..+...++..|+....+.++ ....+.+|||+|+++|..+...|++.|+.+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 4456899999999999999999999999999999899999888888873 235789999999999999999999999999
Q ss_pred EEEEEccCCCCh----hHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 265 VLVVAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 265 llVvDa~~g~~~----q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
++|||.++..+. .|++.+......++|.++|+||+|+.... .+. .+.+..+.... .++++++||++|.||
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R--~V~---~e~ge~lA~e~-G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKR--QVS---KERGEALAREY-GIKFFETSAKTNFNI 162 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccc--ccc---HHHHHHHHHHh-CCeEEEccccCCCCH
Confidence 999999984432 35555555556689999999999995411 111 11111111111 368999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++.|-.|.+...
T Consensus 163 ~eaF~~La~~i~ 174 (207)
T KOG0078|consen 163 EEAFLSLARDIL 174 (207)
T ss_pred HHHHHHHHHHHH
Confidence 999988887543
No 186
>PLN03110 Rab GTPase; Provisional
Probab=99.77 E-value=4.9e-18 Score=172.93 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=117.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
..++|+++|++|+|||||+++|.+..+.....++++.++....+.++ ....+.||||||++.|..++..+++.+|++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 44799999999999999999999988876666777777666666652 23689999999999999999989999999999
Q ss_pred EEEccCCCChhHHH----HHHHhhhcCCCEEEEEeCCCCCCCCc--chhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMPQTLE----AIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~q~~~----~l~~l~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|.++....+... .+......++|+++|+||+|+..... .+....+. .. ..++++++||++|.|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~------~~--~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALA------EK--EGLSFLETSALEATNV 162 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHH------HH--cCCEEEEEeCCCCCCH
Confidence 99998754433332 22222235789999999999853211 11111111 11 1368999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
+++++.|...+.
T Consensus 163 ~~lf~~l~~~i~ 174 (216)
T PLN03110 163 EKAFQTILLEIY 174 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999999977653
No 187
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=3.3e-18 Score=166.24 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=105.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEe-cCCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGM-STGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~-~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|||||||+++|.+..+... .+.++.++. ..... ..+..+.+|||||++.+...+...+..+|++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEIT-IPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceE-eeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 3799999999999999999998877543 233222221 11111 15578999999999888777777789999999999
Q ss_pred EccCCCChhHHH-HH-HHhh--hcCCCEEEEEeCCCCCCCCcc-hhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 269 AADDGVMPQTLE-AI-AHAN--AANVPIVVAINKCDKPAADPE-RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 269 Da~~g~~~q~~~-~l-~~l~--~~~~piIvViNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|++++...+... .| ..+. ..+.|+++|+||+|+.+.... .....+... ...+....+++++||++|.|++++
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~Sa~~~~~v~~l 155 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPI---MNEFREIETCVECSAKTLINVSEV 155 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHH---HHHHhcccEEEEeccccccCHHHH
Confidence 998754433321 12 2222 247899999999999653321 111111110 111111237999999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
++.+....
T Consensus 156 f~~~~~~~ 163 (166)
T cd01893 156 FYYAQKAV 163 (166)
T ss_pred HHHHHHHh
Confidence 99887653
No 188
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.77 E-value=3.3e-18 Score=168.10 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=110.5
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....+++.... ...+... .++.+.+|||||+++|...+..++..+|++++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998877555555443222 2233331 2456899999999999988888999999999999
Q ss_pred EccCCCChhHHHH-HHHh----hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 269 AADDGVMPQTLEA-IAHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 269 Da~~g~~~q~~~~-l~~l----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|.++....+.... +..+ ...+.|+|+|+||+|+....... ....... ...+ ..+++++||++|.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVS-TEEGKEL---AESW--GAAFLESSARENENVEEA 154 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccC-HHHHHHH---HHHc--CCeEEEEeCCCCCCHHHH
Confidence 9998543332222 1222 23478999999999996421111 1111111 1122 258999999999999999
Q ss_pred HHHHHHHHHHcc
Q 005218 344 EVALLLQAEMMN 355 (708)
Q Consensus 344 ~~~I~~~~~~~~ 355 (708)
+++|.+.+....
T Consensus 155 ~~~l~~~~~~~~ 166 (180)
T cd04137 155 FELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHhc
Confidence 999998775443
No 189
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.77 E-value=4.5e-18 Score=171.12 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=108.9
Q ss_pred EecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC
Q 005218 195 MGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG 273 (708)
Q Consensus 195 vG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g 273 (708)
+|.+|||||||+++|+...+.....+++..++....+.++ ....+.||||||++.|..++..+++.+|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999877765555655555554444442 357899999999999999999999999999999999986
Q ss_pred CChhHHHHH-HHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHH
Q 005218 274 VMPQTLEAI-AHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 274 ~~~q~~~~l-~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
.+.+....| ..+.. .++|+++|+||+|+...... .+.+ .+.. ...++++++||++|.||+++|++|...
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~--~~~~-----~~~~-~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVK--AKSI-----TFHR-KKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCC--HHHH-----HHHH-HcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 544333222 22222 57899999999998532111 1111 1111 124689999999999999999999876
Q ss_pred H
Q 005218 351 A 351 (708)
Q Consensus 351 ~ 351 (708)
+
T Consensus 153 i 153 (200)
T smart00176 153 L 153 (200)
T ss_pred H
Confidence 5
No 190
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=2.7e-18 Score=180.43 Aligned_cols=140 Identities=28% Similarity=0.298 Sum_probs=112.2
Q ss_pred EEEEEecCCCCchHHHHHhhcCccc------------------ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLV------------------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~------------------~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~ 252 (708)
+|+++||+|+|||||+++|+..... ....+|+|.+.....+.+ ++++++|||||||.+|..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFTI 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHHH
Confidence 5899999999999999999642211 123468999988888888 899999999999999999
Q ss_pred hhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEE
Q 005218 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
.+..+++.+|++++|+|+.+++..++...+..+...++|+++++||+|+.+.+.+....++..... ......++|+
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~----~~~~~~~~Pi 155 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLG----ANPVPLQLPI 155 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC----CCceEEEecc
Confidence 899999999999999999999999999999999989999999999999986665554444433210 1112246777
Q ss_pred eee
Q 005218 333 SAV 335 (708)
Q Consensus 333 SAk 335 (708)
|+.
T Consensus 156 sa~ 158 (270)
T cd01886 156 GEE 158 (270)
T ss_pred ccC
Confidence 765
No 191
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=6.1e-18 Score=173.70 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=112.6
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
..+|+++|+++||||||+++|....+...+.|++..++.. .+..+ ....+.||||||++.|..++..+++.||++++|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 3689999999999999999999988877777766555432 23331 346799999999999999999999999999999
Q ss_pred EEccCCCChhH-HHHH-HHhh--hcCCCEEEEEeCCCCCCCCcch-------hhhhhhhcccchhccCCcceEEEEeeec
Q 005218 268 VAADDGVMPQT-LEAI-AHAN--AANVPIVVAINKCDKPAADPER-------VKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 268 vDa~~g~~~q~-~~~l-~~l~--~~~~piIvViNK~Dl~~~~~~~-------~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
||.++..+.+. ...| ..+. ..+.|+|+|+||+||....... ......+.+..+....+..++++|||++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99998544332 1222 2222 2478999999999995311000 0000011111222211222689999999
Q ss_pred CC-CchhHHHHHHHHH
Q 005218 337 KT-GLDDLEVALLLQA 351 (708)
Q Consensus 337 g~-GI~~L~~~I~~~~ 351 (708)
|. |++++|+.+....
T Consensus 172 g~~~V~e~F~~~~~~~ 187 (232)
T cd04174 172 SEKSIHSIFRSASLLC 187 (232)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 98 8999999988764
No 192
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=4.4e-18 Score=167.90 Aligned_cols=149 Identities=23% Similarity=0.332 Sum_probs=106.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc--cccccCceEEeeeEEEEEecCCeeEEEeeCCCcc----------hhhhhh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA----------AFSAMR 254 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~--~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~----------~f~~~~ 254 (708)
.+.++|+|+|++|+|||||+|+|++..+ ..+..+++|+++..+.. + ..+.||||||+. .+..+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhHHHHHHHHH
Confidence 4678999999999999999999998763 23566788887665443 2 379999999953 233333
Q ss_pred hccc---ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEE
Q 005218 255 KRGA---AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVE 331 (708)
Q Consensus 255 ~~~~---~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 331 (708)
..++ ..+|++++|+|++++...++...+..+...++|+++++||+|+.... .....+.+....+...+...++++
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~i~~~l~~~~~~~~v~~ 169 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKS--ELNKQLKKIKKALKKDADDPSVQL 169 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHH--HHHHHHHHHHHHHhhccCCCceEE
Confidence 3333 35689999999999888888888888877899999999999996422 111111111111222233458999
Q ss_pred EeeecCCCch
Q 005218 332 VSAVKKTGLD 341 (708)
Q Consensus 332 vSAktg~GI~ 341 (708)
+||++|+|++
T Consensus 170 ~Sa~~g~gi~ 179 (179)
T TIGR03598 170 FSSLKKTGID 179 (179)
T ss_pred EECCCCCCCC
Confidence 9999999985
No 193
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=5.7e-18 Score=182.88 Aligned_cols=159 Identities=23% Similarity=0.211 Sum_probs=114.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcch-------hhhhhhccccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAAV 260 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~-------f~~~~~~~~~~ 260 (708)
--..|+|+|.||||||||+|+|.+....++..++||.+.....+.+.++..+++|||||+.+ +.....+.++.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 44679999999999999999999887777888999999888777775677899999999642 22333456778
Q ss_pred ccEEEEEEEccCCCChhHHHHH-HHhhh-----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEee
Q 005218 261 TDIVVLVVAADDGVMPQTLEAI-AHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 261 aDivllVvDa~~g~~~q~~~~l-~~l~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSA 334 (708)
+|++++|+|+++....+..+.| ..+.. .++|+++|+||+|+.+.... ........ .... ..+++++||
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~-~~~~~~~~---~~~~--~~~i~~iSA 310 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE-REKRAALE---LAAL--GGPVFLISA 310 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH-HHHHHHHH---HHhc--CCCEEEEEc
Confidence 9999999999864333333333 22221 36899999999999643211 11111110 1111 257999999
Q ss_pred ecCCCchhHHHHHHHHHH
Q 005218 335 VKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 335 ktg~GI~~L~~~I~~~~~ 352 (708)
+++.|+++|+++|...+.
T Consensus 311 ktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 311 VTGEGLDELLRALWELLE 328 (335)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988654
No 194
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.76 E-value=5.3e-18 Score=160.83 Aligned_cols=153 Identities=17% Similarity=0.188 Sum_probs=110.1
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
++|+++|++|+|||||+++|.+........++++.++....+... ....+.+|||||++.+.......++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 479999999999999999999888877666666666555555542 3478899999999999988888899999999999
Q ss_pred EccCCCChhHHH-HHHHhhh---cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 269 AADDGVMPQTLE-AIAHANA---ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 269 Da~~g~~~q~~~-~l~~l~~---~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
|+++....+... .+..+.. .+.|+++++||+|+..... ...+.+... ... ...+++++||++|.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~---~~~--~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQ-VSTEEAQQF---AKE--NGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccc-ccHHHHHHH---HHH--cCCeEEEEecCCCCCHHHHH
Confidence 998732222222 2222222 4589999999999952111 111111111 011 24689999999999999999
Q ss_pred HHHH
Q 005218 345 VALL 348 (708)
Q Consensus 345 ~~I~ 348 (708)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9875
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.76 E-value=5.3e-18 Score=200.80 Aligned_cols=153 Identities=22% Similarity=0.320 Sum_probs=121.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcch--------hhhhhhccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAA--------FSAMRKRGA 258 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~--------f~~~~~~~~ 258 (708)
..++|+|+|+||||||||+|+|++...+. ...+|+|++.......+ ++..+.||||||+.. +......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 34789999999999999999999877654 77899999988877777 788999999999753 333444568
Q ss_pred ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 259 ~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
+.||++|+|+|++++..+.+.+.+..+...++|+|+|+||+|+.... .........+ .-..+++||++|.
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~--~~~~~~~~lg--------~~~~~~iSA~~g~ 422 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE--YDAAEFWKLG--------LGEPYPISAMHGR 422 (712)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch--hhHHHHHHcC--------CCCeEEEECCCCC
Confidence 89999999999999888888778888888899999999999985421 1111111111 1135799999999
Q ss_pred CchhHHHHHHHHH
Q 005218 339 GLDDLEVALLLQA 351 (708)
Q Consensus 339 GI~~L~~~I~~~~ 351 (708)
|+++|+++|...+
T Consensus 423 GI~eLl~~i~~~l 435 (712)
T PRK09518 423 GVGDLLDEALDSL 435 (712)
T ss_pred CchHHHHHHHHhc
Confidence 9999999998764
No 196
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.76 E-value=4e-18 Score=170.99 Aligned_cols=155 Identities=28% Similarity=0.288 Sum_probs=107.9
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
+|+++|++|+|||||+++|++..+.....+ ++.+.....+.+ ++ ..+.||||||+..|..++..++..+|++++|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~-t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRR-TVEEMHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCC-chhhheeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999998876543333 333333334444 44 67899999999999988888999999999999
Q ss_pred EccCCCChhHHHHH-HHh----hhcCCCEEEEEeCCCCCCCCcchhhh-hhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 269 AADDGVMPQTLEAI-AHA----NAANVPIVVAINKCDKPAADPERVKN-QLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 269 Da~~g~~~q~~~~l-~~l----~~~~~piIvViNK~Dl~~~~~~~~~~-~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+++....+....+ ..+ ...++|+|+|+||+|+..... .+.. ...+. .... ...+++++||++|.|+++
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~-~v~~~~~~~~--~~~~--~~~~~~~~Sa~~g~gv~~ 153 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEER-QVPAKDALST--VELD--WNCGFVETSAKDNENVLE 153 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccc-cccHHHHHHH--HHhh--cCCcEEEecCCCCCCHHH
Confidence 99874332222221 111 225799999999999964211 1111 11100 0001 135789999999999999
Q ss_pred HHHHHHHHHH
Q 005218 343 LEVALLLQAE 352 (708)
Q Consensus 343 L~~~I~~~~~ 352 (708)
++++|...+.
T Consensus 154 l~~~l~~~~~ 163 (198)
T cd04147 154 VFKELLRQAN 163 (198)
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 197
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.76 E-value=6.2e-18 Score=175.60 Aligned_cols=156 Identities=22% Similarity=0.284 Sum_probs=109.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.+|+++|.+|+|||||+++|++..+...+.+++ .++....+.+ ++ +.+.||||||++.|..++..++..+|++|+|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi-~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCh-hHhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 379999999999999999999888765554444 3444444455 44 6788999999999998888888999999999
Q ss_pred EEccCCCChhHHH-HHHHhh------------hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEee
Q 005218 268 VAADDGVMPQTLE-AIAHAN------------AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 268 vDa~~g~~~q~~~-~l~~l~------------~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSA 334 (708)
||+++....+... ++..+. ..++|+|+|+||+|+...... ...++.... .....++++++||
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v-~~~ei~~~~----~~~~~~~~~evSA 153 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV-QRDEVEQLV----GGDENCAYFEVSA 153 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc-CHHHHHHHH----HhcCCCEEEEEeC
Confidence 9998743322222 112221 136899999999999642111 111111110 0011357999999
Q ss_pred ecCCCchhHHHHHHHHHH
Q 005218 335 VKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 335 ktg~GI~~L~~~I~~~~~ 352 (708)
++|.|+++|+++|...+.
T Consensus 154 ktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 154 KKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999998653
No 198
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=6.2e-18 Score=171.59 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=112.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC--CeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST--GASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~--g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.+|+++|++|+|||||+++|.+..+.....++++.++....+.+.+ ...+.+|||||++.+..++..+++.+|++++|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 82 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLV 82 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEE
Confidence 6899999999999999999999888766666776676655555432 36789999999999999888899999999999
Q ss_pred EEccCCCChhHHHH-HHHh----hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMPQTLEA-IAHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~q~~~~-l~~l----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|.++....+.... +..+ .....|+++|+||+|+...... ..+..... ...+ ..+++++||++|.|+++
T Consensus 83 ~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v-~~~~~~~~---~~~~--~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 83 FDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQV-TREEAEKL---AKDL--GMKYIETSARTGDNVEE 156 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccccc-CHHHHHHH---HHHh--CCEEEEEeCCCCCCHHH
Confidence 99987432222221 1212 1235678999999999642110 01111110 1112 26899999999999999
Q ss_pred HHHHHHHHHH
Q 005218 343 LEVALLLQAE 352 (708)
Q Consensus 343 L~~~I~~~~~ 352 (708)
++++|.+...
T Consensus 157 ~f~~l~~~~~ 166 (211)
T cd04111 157 AFELLTQEIY 166 (211)
T ss_pred HHHHHHHHHH
Confidence 9999987543
No 199
>PRK11058 GTPase HflX; Provisional
Probab=99.76 E-value=5.1e-18 Score=188.72 Aligned_cols=150 Identities=20% Similarity=0.250 Sum_probs=111.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcch---------hhhhhhccccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA---------FSAMRKRGAAV 260 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~---------f~~~~~~~~~~ 260 (708)
+.|+++|.||||||||+|+|++.++...+.+++|.|.....+.+.++.++.||||||... |.. +...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~-tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKA-TLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHH-HHHHhhc
Confidence 799999999999999999999988888888899999888777774445899999999732 222 2234689
Q ss_pred ccEEEEEEEccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcce-EEEEeee
Q 005218 261 TDIVVLVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQ-VVEVSAV 335 (708)
Q Consensus 261 aDivllVvDa~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~-vi~vSAk 335 (708)
||++|+|+|++++...... ..+..+...++|+++|+||+|+........ ... .. ..+ ++++||+
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~----~~~-----~~--~~~~~v~ISAk 345 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRI----DRD-----EE--NKPIRVWLSAQ 345 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHH----HHH-----hc--CCCceEEEeCC
Confidence 9999999999986544433 334444445799999999999964211111 000 00 123 5889999
Q ss_pred cCCCchhHHHHHHHHH
Q 005218 336 KKTGLDDLEVALLLQA 351 (708)
Q Consensus 336 tg~GI~~L~~~I~~~~ 351 (708)
+|.|+++|+++|....
T Consensus 346 tG~GIdeL~e~I~~~l 361 (426)
T PRK11058 346 TGAGIPLLFQALTERL 361 (426)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 200
>PLN03118 Rab family protein; Provisional
Probab=99.76 E-value=6.3e-18 Score=171.24 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=110.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
..++|+|+|++|+|||||+++|++..+.. ..+.++.++....+.++ ..+.+.||||||++.|..++..+++.+|++|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999877642 33444444443444442 23678999999999999999999999999999
Q ss_pred EEEccCCCChhHHH-HHHH-hh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMPQTLE-AIAH-AN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~q~~~-~l~~-l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++....+... .|.. +. ..+.|+++|+||+|+....... .+...... .. ..++++++||++|.|+
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~-~~~~~~~~---~~--~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS-REEGMALA---KE--HGCLFLECSAKTRENV 165 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC-HHHHHHHH---HH--cCCEEEEEeCCCCCCH
Confidence 99998743333332 2211 11 2467899999999996432111 11111110 11 1257999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++++++|...+.
T Consensus 166 ~~l~~~l~~~~~ 177 (211)
T PLN03118 166 EQCFEELALKIM 177 (211)
T ss_pred HHHHHHHHHHHH
Confidence 999999997764
No 201
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.76 E-value=5e-18 Score=165.46 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=106.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.+.++|+++|++|+|||||+++|.+..+.. ..+ |..+....+.. .+..+.+|||||+..+...+...++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~--t~g~~~~~i~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITP--TQGFNIKTVQS-DGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCC--CCCcceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 346899999999999999999999875532 111 22222233444 67899999999999998888888899999999
Q ss_pred EEEccCCCC-hhHHHHHHH----hhhcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVM-PQTLEAIAH----ANAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~-~q~~~~l~~----l~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++... ......+.. ....++|+++++||+|+.... .+.+.+.+. .. .......+++++||++|.|+
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~---~~-~~~~~~~~~~~~Sa~~~~gi 163 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALN---LH-DLRDRTWHIQACSAKTGEGL 163 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcC---Cc-ccCCCeEEEEEeECCCCCCH
Confidence 999986321 111222222 223578999999999996432 122222221 11 00112246889999999999
Q ss_pred hhHHHHHHH
Q 005218 341 DDLEVALLL 349 (708)
Q Consensus 341 ~~L~~~I~~ 349 (708)
++++++|.+
T Consensus 164 ~~~~~~l~~ 172 (173)
T cd04155 164 QEGMNWVCK 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999864
No 202
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=7.6e-18 Score=176.78 Aligned_cols=116 Identities=31% Similarity=0.444 Sum_probs=95.0
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccc----------------------cCceEEeeeEEEEEecCCeeEEEeeCCC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKE----------------------AGGITQHMGAFVVGMSTGASITFLDTPG 246 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~----------------------~~gtT~di~~~~v~~~~g~~v~liDTpG 246 (708)
..+|+|+||+|+|||||+++|+.....+.. ..++|.......+.+ ++++++||||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence 368999999999999999999754322111 124444445556666 889999999999
Q ss_pred cchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCC
Q 005218 247 HAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD 305 (708)
Q Consensus 247 ~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~ 305 (708)
|.+|......+++.+|++++|+|+++++..++...+..+...++|+++++||+|+...+
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRD 139 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCC
Confidence 99999888888999999999999999988888888888877899999999999997654
No 203
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.75 E-value=5.9e-18 Score=172.86 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=112.5
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|.+|+|||||+++|....+...+.|++..++. ..+..+ ....+.||||||++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 57999999999999999999998887777776654443 233331 3467889999999999999999999999999999
Q ss_pred EccCCCChhHH-HHHHH-h--hhcCCCEEEEEeCCCCCCCCcchhhh--------hhhhcccchhccCCcceEEEEeeec
Q 005218 269 AADDGVMPQTL-EAIAH-A--NAANVPIVVAINKCDKPAADPERVKN--------QLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 269 Da~~g~~~q~~-~~l~~-l--~~~~~piIvViNK~Dl~~~~~~~~~~--------~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
|.++....+.. ..|.. + ...+.|+|+|+||+||.... ..... ...+.+..+....+..++++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch-hhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99985333222 22221 1 12578999999999995421 10000 0111222222223335899999999
Q ss_pred CCC-chhHHHHHHHHH
Q 005218 337 KTG-LDDLEVALLLQA 351 (708)
Q Consensus 337 g~G-I~~L~~~I~~~~ 351 (708)
+.| ++++|+......
T Consensus 160 ~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 160 SERSVRDVFHVATVAS 175 (222)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 985 999999887754
No 204
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.75 E-value=8.4e-18 Score=163.58 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=106.1
Q ss_pred EEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEcc
Q 005218 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAAD 271 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~ 271 (708)
|+++|++|+|||||+++|.+..+.....|++..+ ...+.. .+..+.+|||||++.|..++..+++.+|++++|+|++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPT-QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEee-CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 7899999999999999999876655444444333 233444 6789999999999999999999999999999999998
Q ss_pred CCCChh-HHHHHHHhh--hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeec------CCCch
Q 005218 272 DGVMPQ-TLEAIAHAN--AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVK------KTGLD 341 (708)
Q Consensus 272 ~g~~~q-~~~~l~~l~--~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt------g~GI~ 341 (708)
+..... ....+..+. ..++|+++|+||+|+..... ..+...+....+. . ...++++++||++ ++|++
T Consensus 79 ~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~-~--~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 79 DSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIA-R--GRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhc-C--CCceEEEEeeecCCCChhHHHHHH
Confidence 743222 222223232 25799999999999964321 1111111111111 1 1235788898888 99999
Q ss_pred hHHHHHHH
Q 005218 342 DLEVALLL 349 (708)
Q Consensus 342 ~L~~~I~~ 349 (708)
++|+.+..
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99987753
No 205
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.75 E-value=1.7e-17 Score=158.66 Aligned_cols=155 Identities=21% Similarity=0.264 Sum_probs=111.8
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh--------hhhcccc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA--------MRKRGAA 259 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~--------~~~~~~~ 259 (708)
..+|+++|++|+|||||+|+|++..... ...+.+|++........ .+..+.+|||||+..... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999887654 44455666554444443 678999999999754322 2334578
Q ss_pred cccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 260 ~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
.+|++++|+|+++.........+..+...+.|+++++||+|+... .+.....+... .......+++++|++++.|
T Consensus 82 ~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD-KEDLLPLLEKL----KELGPFAEIFPISALKGEN 156 (168)
T ss_pred hCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc-HHHHHHHHHHH----HhccCCCceEEEEeccCCC
Confidence 999999999999875555555566666667999999999999632 22222222111 1112235899999999999
Q ss_pred chhHHHHHHH
Q 005218 340 LDDLEVALLL 349 (708)
Q Consensus 340 I~~L~~~I~~ 349 (708)
+++|++.|.+
T Consensus 157 ~~~l~~~l~~ 166 (168)
T cd04163 157 VDELLEEIVK 166 (168)
T ss_pred hHHHHHHHHh
Confidence 9999999875
No 206
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=3.5e-18 Score=174.31 Aligned_cols=113 Identities=32% Similarity=0.435 Sum_probs=93.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccc----------------cccCceEEeeeEEEEEec---------CCeeEEEeeC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVA----------------KEAGGITQHMGAFVVGMS---------TGASITFLDT 244 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~----------------~~~~gtT~di~~~~v~~~---------~g~~v~liDT 244 (708)
++|+++||+++|||||+++|+...... ....|+|.+.....+.+. .++.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 479999999999999999997543211 123466666544333331 2688999999
Q ss_pred CCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC
Q 005218 245 PGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 245 pG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~ 302 (708)
|||.+|...+..+++.+|++++|+|+.+|...++...++.+...++|+|+|+||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 9999999999999999999999999999999999999999888899999999999985
No 207
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.75 E-value=8.8e-18 Score=164.39 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=106.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
++++++|++|+|||||+.++.+..+.....+ |+.+.....+..+ ....+.+|||||++.|..++..+++.+|++|+|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVP-TAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 4799999999999999999988776554444 3444443444442 2357889999999999999888999999999999
Q ss_pred EccCCCChhHH--HHHHHhhh--cCCCEEEEEeCCCCCCCCc---------chhhhhhhhcccchhccCCcceEEEEeee
Q 005218 269 AADDGVMPQTL--EAIAHANA--ANVPIVVAINKCDKPAADP---------ERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 269 Da~~g~~~q~~--~~l~~l~~--~~~piIvViNK~Dl~~~~~---------~~~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
|.++....+.. ..+..+.. .+.|+++++||+|+..... ++.... +....+....+..+++++||+
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~--~~~~~~a~~~~~~~~~e~Sa~ 157 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQ--SRAKALAEKIGACEYIECSAL 157 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCH--HHHHHHHHHhCCCeEEEEeCC
Confidence 99885433322 12222222 4689999999999953210 000000 001111111122479999999
Q ss_pred cCCCchhHHHHHHH
Q 005218 336 KKTGLDDLEVALLL 349 (708)
Q Consensus 336 tg~GI~~L~~~I~~ 349 (708)
+|.|+++|++.+..
T Consensus 158 ~~~~v~~lf~~~~~ 171 (173)
T cd04130 158 TQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999988764
No 208
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.75 E-value=1.3e-17 Score=157.24 Aligned_cols=151 Identities=21% Similarity=0.276 Sum_probs=108.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
++|+++|++|+|||||+++|..........+++|.++....+.. ++ +.+.+|||||+..+..++....+.++.++.+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 68999999999999999999988866677789999988776666 66 7899999999999887776666677777777
Q ss_pred EEccCCCC------hhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGVM------PQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~~------~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|....+. ..+...+......+.|+++++||+|+..... ....... +... ...+++++||++|.|+.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~---~~~~-~~~~~~~~sa~~~~gv~ 153 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKL---KTHVAFL---FAKL-NGEPIIPLSAETGKNID 153 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchh---hHHHHHH---Hhhc-cCCceEEeecCCCCCHH
Confidence 77654311 1122222222223889999999999965321 1111111 1111 23479999999999999
Q ss_pred hHHHHHH
Q 005218 342 DLEVALL 348 (708)
Q Consensus 342 ~L~~~I~ 348 (708)
+++++|.
T Consensus 154 ~~~~~l~ 160 (161)
T TIGR00231 154 SAFKIVE 160 (161)
T ss_pred HHHHHhh
Confidence 9998874
No 209
>PLN03108 Rab family protein; Provisional
Probab=99.74 E-value=1.7e-17 Score=168.19 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=111.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
..+|+++|++|+|||||+++|++..+.....++++.++....+.+. ....+.+|||||++.+..++...++.+|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 4789999999999999999999888766555666555544445552 235688999999999998888889999999999
Q ss_pred EEccCCCChhHHHH----HHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 268 VAADDGVMPQTLEA----IAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 268 vDa~~g~~~q~~~~----l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+|+++....+.... +......+.|+++++||+|+........ ...... ...+ .++++++||++|.|++++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST-EEGEQF---AKEH--GLIFMEASAKTAQNVEEA 159 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCH-HHHHHH---HHHc--CCEEEEEeCCCCCCHHHH
Confidence 99987433332222 2222234789999999999964221110 111100 0111 258999999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
|+++...+
T Consensus 160 f~~l~~~~ 167 (210)
T PLN03108 160 FIKTAAKI 167 (210)
T ss_pred HHHHHHHH
Confidence 99887654
No 210
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.74 E-value=7.4e-18 Score=163.29 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=101.0
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcch-hhhhhhcccccccEEEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAA-FSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~-f~~~~~~~~~~aDivllVv 268 (708)
+|+++|++|+|||||+++++...+.....+.+. ......+..+ ....+.+|||||+.. +.......++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999987666443333332 2222233331 234688999999985 3455667889999999999
Q ss_pred EccCCCChhH----HHHHHHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecC-CCch
Q 005218 269 AADDGVMPQT----LEAIAHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK-TGLD 341 (708)
Q Consensus 269 Da~~g~~~q~----~~~l~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg-~GI~ 341 (708)
|+++....+. ...+.... ..++|+++|+||+|+.....-.. +..... ...+ ..+++++||++| .|++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-~~~~~~---~~~~--~~~~~e~Sa~~~~~~v~ 153 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST-EEGEKL---ASEL--GCLFFEVSAAEDYDGVH 153 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH-HHHHHH---HHHc--CCEEEEeCCCCCchhHH
Confidence 9988543332 22222222 34799999999999853211010 111100 0111 258999999999 5999
Q ss_pred hHHHHHHHHH
Q 005218 342 DLEVALLLQA 351 (708)
Q Consensus 342 ~L~~~I~~~~ 351 (708)
++|+.|....
T Consensus 154 ~~f~~l~~~~ 163 (165)
T cd04146 154 SVFHELCREV 163 (165)
T ss_pred HHHHHHHHHH
Confidence 9999998643
No 211
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.74 E-value=9.7e-18 Score=163.24 Aligned_cols=149 Identities=24% Similarity=0.250 Sum_probs=102.8
Q ss_pred EEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC-CeeEEEeeCCCcchhh----h---hhhcccccccEEE
Q 005218 194 VMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFS----A---MRKRGAAVTDIVV 265 (708)
Q Consensus 194 IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~-g~~v~liDTpG~~~f~----~---~~~~~~~~aDivl 265 (708)
++|++|||||||+|+|.+........+++|.+.....+.+ + +.++.||||||+.... . .....+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999999998775566778888876666666 5 8999999999974321 1 1223567899999
Q ss_pred EEEEccCCC------ChhHHH----HHHHhh-------hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcce
Q 005218 266 LVVAADDGV------MPQTLE----AIAHAN-------AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQ 328 (708)
Q Consensus 266 lVvDa~~g~------~~q~~~----~l~~l~-------~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 328 (708)
+|+|+++.. ...... .+.... ..++|+++|+||+|+..... ....... ........+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~----~~~~~~~~~ 153 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE--LEEELVR----ELALEEGAE 153 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH--HHHHHHH----HHhcCCCCC
Confidence 999998752 111111 121111 14789999999999964321 1111000 011122457
Q ss_pred EEEEeeecCCCchhHHHHHHH
Q 005218 329 VVEVSAVKKTGLDDLEVALLL 349 (708)
Q Consensus 329 vi~vSAktg~GI~~L~~~I~~ 349 (708)
++++||++|.|++++++.|..
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHh
Confidence 999999999999999998865
No 212
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6.8e-18 Score=161.42 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=121.2
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
-+++.++|+.+||||+|+-+++...+......++..+++...+.++ ...++.+|||+||+.|...+..+++.|-.+|||
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV 85 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV 85 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence 3689999999999999999999999987777788888888888874 446789999999999999999999999999999
Q ss_pred EEccCCCC----hhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 268 VAADDGVM----PQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 268 vDa~~g~~----~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
||.+...+ .+|++.+++....|.-+++++||+||.... .+.. +.+..+.+. ....+.++||+|++|+++.
T Consensus 86 ydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR--~Vs~---EEGeaFA~e-hgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 86 YDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR--EVSK---EEGEAFARE-HGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc--cccH---HHHHHHHHH-cCceeehhhhhhhhhHHHH
Confidence 99987433 445555555555678899999999995421 1111 111112111 1346789999999999999
Q ss_pred HHHHHHH
Q 005218 344 EVALLLQ 350 (708)
Q Consensus 344 ~~~I~~~ 350 (708)
|..+...
T Consensus 160 F~nta~~ 166 (216)
T KOG0098|consen 160 FINTAKE 166 (216)
T ss_pred HHHHHHH
Confidence 8876654
No 213
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.74 E-value=1.1e-17 Score=157.98 Aligned_cols=135 Identities=27% Similarity=0.299 Sum_probs=90.0
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcc-----hhhhhhhcccccccEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA-----AFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~-----~f~~~~~~~~~~aDivl 265 (708)
+|+++|++|+|||||+|+|.+..+. ..++++ +.+ .+ .+|||||+. .+..+. ..++.+|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~-~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEY-ND---GAIDTPGEYVENRRLYSALI-VTAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEE-cC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEE
Confidence 7999999999999999999987653 222211 222 22 689999972 233333 3578999999
Q ss_pred EEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHH
Q 005218 266 LVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~ 345 (708)
+|+|++++...+....+.. .+.|+++|+||+|+.+... ..+...+. .... +..+++++||++|.|+++|++
T Consensus 68 lv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~--~~~~~~~~---~~~~-~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 68 LVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADV--DIERAKEL---LETA-GAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCccc--CHHHHHHH---HHHc-CCCcEEEEecCCCCCHHHHHH
Confidence 9999998765544333222 2459999999999964211 11111110 0111 123789999999999999998
Q ss_pred HHH
Q 005218 346 ALL 348 (708)
Q Consensus 346 ~I~ 348 (708)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 214
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.73 E-value=1.2e-17 Score=161.67 Aligned_cols=140 Identities=21% Similarity=0.240 Sum_probs=93.9
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcc----hhhhhhhcccccccEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA----AFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~----~f~~~~~~~~~~aDivll 266 (708)
+|+++|++|+|||||+|+|.+..... ..|..+ .+ .+. .+|||||.. .+......++..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~~~v-----~~-~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKTQAV-----EF-NDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccceEE-----EE-CCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999988654211 122211 22 111 269999962 232223345789999999
Q ss_pred EEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHH
Q 005218 267 VVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~ 346 (708)
|+|++++........+.. ..++|+++++||+|+.+.+.+...+.+... +...|++++||++|.|+++|++.
T Consensus 71 v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~-------~~~~p~~~~Sa~~g~gi~~l~~~ 141 (158)
T PRK15467 71 VHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLLET-------GFEEPIFELNSHDPQSVQQLVDY 141 (158)
T ss_pred EEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHHHc-------CCCCCEEEEECCCccCHHHHHHH
Confidence 999997654333322221 246799999999999654433322222221 22258999999999999999999
Q ss_pred HHHHH
Q 005218 347 LLLQA 351 (708)
Q Consensus 347 I~~~~ 351 (708)
|.+..
T Consensus 142 l~~~~ 146 (158)
T PRK15467 142 LASLT 146 (158)
T ss_pred HHHhc
Confidence 98765
No 215
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=2.5e-17 Score=181.27 Aligned_cols=161 Identities=18% Similarity=0.133 Sum_probs=114.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcch-------hhhhhhccccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAAV 260 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~-------f~~~~~~~~~~ 260 (708)
--..|+|+|.||||||||+|+|++....++..|+||++.....+...++..++|+||||+.. ......+.+..
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 33579999999999999999999888777888999999888888774456799999999643 22223346789
Q ss_pred ccEEEEEEEccC----CCChhHHHHHHHhhh-----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEE
Q 005218 261 TDIVVLVVAADD----GVMPQTLEAIAHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVE 331 (708)
Q Consensus 261 aDivllVvDa~~----g~~~q~~~~l~~l~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 331 (708)
+|++++|+|++. ....+....++.+.. .++|+|+|+||+|+... ..+.+.+.... ..+....++++
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~---~~~~~~~~Vi~ 312 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIV---EALGWEGPVYL 312 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHH---HHhCCCCCEEE
Confidence 999999999872 122222223333332 36899999999999642 22222222111 11111236899
Q ss_pred EeeecCCCchhHHHHHHHHHHH
Q 005218 332 VSAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~~~~~~ 353 (708)
+||+++.|+++|++.|...+..
T Consensus 313 ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 313 ISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred EECCCCcCHHHHHHHHHHHhhh
Confidence 9999999999999999887643
No 216
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=99.72 E-value=3.9e-17 Score=143.65 Aligned_cols=93 Identities=47% Similarity=0.817 Sum_probs=90.5
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccceEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeC
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVD 444 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~ 444 (708)
.++|+|+..+++.|.+++.+|++|+|++||++++|..+||||+|.+.+++.+++|.||++|.|.||+++|.+||.|++++
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~gkVr~l~d~~g~~v~~a~Ps~~V~I~G~~~~P~aGd~~~~~~ 81 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYGKVRAMFDENGKRVKEAGPSTPVEILGLKGVPQAGDKFLVVE 81 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccccEEEEEECCCCCCCCEECCCCcEEEcCCCCCCCCCCEEEEeC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhhhhhh
Q 005218 445 SEERARMLSSGRK 457 (708)
Q Consensus 445 ~~~~a~~~~~~~~ 457 (708)
|+++|++++++|+
T Consensus 82 se~~Ak~~~~~r~ 94 (95)
T cd03702 82 SEKEAKEIAEYRK 94 (95)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999999875
No 217
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.72 E-value=4.1e-17 Score=153.91 Aligned_cols=154 Identities=24% Similarity=0.326 Sum_probs=114.2
Q ss_pred EEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhh-------hcccccccEEE
Q 005218 194 VMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR-------KRGAAVTDIVV 265 (708)
Q Consensus 194 IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~-------~~~~~~aDivl 265 (708)
++|++|+|||||+++|.+.... .+..+++|.+..........+..+.+|||||+..+.... ...++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987776 577778888877776665347899999999987665333 34678999999
Q ss_pred EEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHH
Q 005218 266 LVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~ 345 (708)
+|+|+++.........+......+.|+++|+||+|+....... .... ............+++++||+++.|++++++
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~ 157 (163)
T cd00880 81 FVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEE--ELLE-LRLLILLLLLGLPVIAVSALTGEGIDELRE 157 (163)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHH--HHHH-HHHhhcccccCCceEEEeeeccCCHHHHHH
Confidence 9999998776666554556666789999999999996532211 1100 000011222356899999999999999999
Q ss_pred HHHHH
Q 005218 346 ALLLQ 350 (708)
Q Consensus 346 ~I~~~ 350 (708)
+|...
T Consensus 158 ~l~~~ 162 (163)
T cd00880 158 ALIEA 162 (163)
T ss_pred HHHhh
Confidence 98764
No 218
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.72 E-value=3.2e-17 Score=162.89 Aligned_cols=161 Identities=18% Similarity=0.206 Sum_probs=105.8
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|....+.....+++..++. ..+.+. ....+.+|||||++.+...+...++.+|++++|+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 37999999999999999999877665444444433332 233331 2345789999999888777667789999999999
Q ss_pred EccCCCChh-----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcch-h---hhhh-hhcccchhccCCcceEEEEeeecCC
Q 005218 269 AADDGVMPQ-----TLEAIAHANAANVPIVVAINKCDKPAADPER-V---KNQL-GAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 269 Da~~g~~~q-----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~-~---~~~l-~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
|.++....+ |...+.. ...++|+++|+||+|+....... . .... .+....+....+..+++++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRR-YCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 998643322 2222222 12368999999999985421100 0 0000 0001111111223479999999999
Q ss_pred CchhHHHHHHHHHH
Q 005218 339 GLDDLEVALLLQAE 352 (708)
Q Consensus 339 GI~~L~~~I~~~~~ 352 (708)
|++++++++...+-
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999997653
No 219
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.72 E-value=3.5e-17 Score=156.42 Aligned_cols=153 Identities=22% Similarity=0.259 Sum_probs=105.8
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvD 269 (708)
+|+++|++|+|||||+++|++..+.....+ ++.+.....+... ..+.+.+|||||+..+..++...++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDP-TIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCC-ChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 589999999999999999998775444433 3334444444442 24678999999999998888888999999999999
Q ss_pred ccCCCChhH-HHHHHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 270 ADDGVMPQT-LEAIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 270 a~~g~~~q~-~~~l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
.++...... ...+..+. ..+.|+++++||+|+....... .+..... ...+ ..+++++||++|.|+++++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS-KEEGKAL---AKEW--GCPFIETSAKDNINIDEVF 153 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec-HHHHHHH---HHHc--CCcEEEeccCCCCCHHHHH
Confidence 987432211 12222221 1478999999999996522111 1111111 1111 1589999999999999999
Q ss_pred HHHHHH
Q 005218 345 VALLLQ 350 (708)
Q Consensus 345 ~~I~~~ 350 (708)
++|...
T Consensus 154 ~~l~~~ 159 (160)
T cd00876 154 KLLVRE 159 (160)
T ss_pred HHHHhh
Confidence 998763
No 220
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=5.9e-17 Score=179.33 Aligned_cols=154 Identities=24% Similarity=0.225 Sum_probs=110.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh-------hhhhhccccccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-------SAMRKRGAAVTD 262 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f-------~~~~~~~~~~aD 262 (708)
..|+++|.||||||||+|+|++....++..++||.+.....+.+.++..++|+||||.... .....+.+..+|
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 4899999999999999999998887777788999998877777744789999999996431 122234467799
Q ss_pred EEEEEEEccCC---CChhHHH-HHHHhhh-----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEe
Q 005218 263 IVVLVVAADDG---VMPQTLE-AIAHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 263 ivllVvDa~~g---~~~q~~~-~l~~l~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vS 333 (708)
++++|+|+++. ...++.+ +...+.. .++|+++|+||+|+... ....+.+.. .+. .+++++|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~------~l~--~~i~~iS 308 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKE------KLG--PKVFPIS 308 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHH------HhC--CcEEEEe
Confidence 99999999753 1112222 2222222 47899999999998432 111112211 111 4799999
Q ss_pred eecCCCchhHHHHHHHHHHH
Q 005218 334 AVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~~~~ 353 (708)
|+++.|+++|+++|...+..
T Consensus 309 A~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 309 ALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876643
No 221
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.72 E-value=7.9e-17 Score=158.68 Aligned_cols=157 Identities=25% Similarity=0.312 Sum_probs=116.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
++..+|+++|..|+|||||+++|....... ..| |..+....+.+ ++..+.+||.+|+..+...+..++..+|++||
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~p--T~g~~~~~i~~-~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIP--TIGFNIEEIKY-KGYSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEE--ESSEEEEEEEE-TTEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCc--ccccccceeee-CcEEEEEEeccccccccccceeeccccceeEE
Confidence 466799999999999999999998765432 222 33344455566 88999999999999999999999999999999
Q ss_pred EEEccCCC-ChhHHHHHHHhh----hcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGV-MPQTLEAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~-~~q~~~~l~~l~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++.. ..+..+.+..+. ..++|+++++||+|+.+.. .+++...+....+. ....+.++.+||++|+|+
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~---~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK---NKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT---SSSCEEEEEEBTTTTBTH
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc---cCCceEEEeeeccCCcCH
Confidence 99998732 234444444432 2478999999999997642 23333333222211 123568999999999999
Q ss_pred hhHHHHHHHH
Q 005218 341 DDLEVALLLQ 350 (708)
Q Consensus 341 ~~L~~~I~~~ 350 (708)
.+.++||.++
T Consensus 165 ~e~l~WL~~~ 174 (175)
T PF00025_consen 165 DEGLEWLIEQ 174 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 222
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=7.6e-17 Score=160.53 Aligned_cols=156 Identities=22% Similarity=0.327 Sum_probs=109.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc--cccccCceEEeeeEEEEEecCCeeEEEeeCCCcc----------hhhhhh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA----------AFSAMR 254 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~--~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~----------~f~~~~ 254 (708)
+..++|+++|++|+|||||+|+|++..+ ..+..+|+|+++....+ +..+.||||||+. .+..+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 3668999999999999999999998753 23556678877654432 4689999999952 333333
Q ss_pred hccc---ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEE
Q 005218 255 KRGA---AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVV 330 (708)
Q Consensus 255 ~~~~---~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi 330 (708)
..++ ..++++++|+|++++......+.+..+...++|+++++||+|+.+... ++....+.. .+... ..+++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~---~l~~~--~~~~~ 172 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRK---ALKFG--DDEVI 172 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHH---HHHhc--CCceE
Confidence 3333 345789999999887666665566666667899999999999964321 111111111 11111 35789
Q ss_pred EEeeecCCCchhHHHHHHHHH
Q 005218 331 EVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 331 ~vSAktg~GI~~L~~~I~~~~ 351 (708)
++||++|.|++++++.|...+
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999988754
No 223
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=5.7e-17 Score=181.60 Aligned_cols=161 Identities=26% Similarity=0.239 Sum_probs=114.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcch-------hhhhhhcccc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAA 259 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~-------f~~~~~~~~~ 259 (708)
+--..|+|+|.||||||||+|+|.+....++..++||++.....+.+ .+..++|+||||+.. ......+.+.
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 34468999999999999999999998877788899999988888877 778999999999532 1122334568
Q ss_pred cccEEEEEEEccCC---C-ChhHHH----HHHHh-----------hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccch
Q 005218 260 VTDIVVLVVAADDG---V-MPQTLE----AIAHA-----------NAANVPIVVAINKCDKPAADPERVKNQLGAEGLEL 320 (708)
Q Consensus 260 ~aDivllVvDa~~g---~-~~q~~~----~l~~l-----------~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~ 320 (708)
.||++|+|+|+++. . ..++.+ .+... ...++|+|+|+||+|+++.. ...+.+.. .+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~l~~---~l 310 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEFVRP---EL 310 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--HHHHHHHH---HH
Confidence 89999999999741 1 111122 22211 12468999999999996421 22122111 11
Q ss_pred hccCCcceEEEEeeecCCCchhHHHHHHHHHHHcc
Q 005218 321 EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMN 355 (708)
Q Consensus 321 ~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~ 355 (708)
... .++++++||+++.|+++|+++|...+....
T Consensus 311 ~~~--g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 311 EAR--GWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHc--CCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 111 258999999999999999999988776543
No 224
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.72 E-value=4e-17 Score=176.13 Aligned_cols=156 Identities=21% Similarity=0.177 Sum_probs=110.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh-------hhhhhccccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-------SAMRKRGAAV 260 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f-------~~~~~~~~~~ 260 (708)
--..|+|+|.||||||||+|+|......++..+.||.+.....+.+.++..++||||||+.+. .....+.+..
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 446899999999999999999998877777778889887777777744489999999997432 2233345668
Q ss_pred ccEEEEEEEccCC---CChhHHHHH-HHhh-----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEE
Q 005218 261 TDIVVLVVAADDG---VMPQTLEAI-AHAN-----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVE 331 (708)
Q Consensus 261 aDivllVvDa~~g---~~~q~~~~l-~~l~-----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 331 (708)
+|++++|+|+++. ...+....| ..+. ..++|+++|+||+|+.... ...+...... ..+ ..++++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~--~~~~~~~~l~---~~~--~~~vi~ 308 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE--ELAELLKELK---KAL--GKPVFP 308 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH--HHHHHHHHHH---HHc--CCcEEE
Confidence 9999999999864 122222222 2222 1368999999999996431 1111111110 111 247999
Q ss_pred EeeecCCCchhHHHHHHHH
Q 005218 332 VSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~~~ 350 (708)
+||+++.|+++|+++|...
T Consensus 309 iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 309 ISALTGEGLDELLYALAEL 327 (329)
T ss_pred EEccCCcCHHHHHHHHHHH
Confidence 9999999999999998764
No 225
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.71 E-value=7.4e-17 Score=164.89 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=101.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccc-cccEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAA-VTDIVVL 266 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~-~aDivll 266 (708)
.+|+++|++|+|||||+++|....+. ....+....+.....+.+. ....+.||||||++.+ .....+. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 47999999999999999999877664 3333322223333333331 4467999999999832 2333455 8999999
Q ss_pred EEEccCCCChhHH-HHHHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 267 VVAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 267 VvDa~~g~~~q~~-~~l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|||+++....+.. +.+..+. ..++|+|+|+||+|+........ +..... ...+ ..+++++||++|.|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~-~~~~~~---a~~~--~~~~~e~SA~~~~gv~ 152 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV-QEGRAC---AVVF--DCKFIETSAGLQHNVD 152 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH-HHHHHH---HHHc--CCeEEEecCCCCCCHH
Confidence 9999984332211 2222222 24789999999999964321110 111110 0111 2579999999999999
Q ss_pred hHHHHHHHHHHH
Q 005218 342 DLEVALLLQAEM 353 (708)
Q Consensus 342 ~L~~~I~~~~~~ 353 (708)
+++++|......
T Consensus 153 ~l~~~l~~~~~~ 164 (221)
T cd04148 153 ELLEGIVRQIRL 164 (221)
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
No 226
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.71 E-value=2.8e-17 Score=166.92 Aligned_cols=113 Identities=35% Similarity=0.478 Sum_probs=89.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCccccc-------------------ccCceEEeeeEEEEEec----CCeeEEEeeCCC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAK-------------------EAGGITQHMGAFVVGMS----TGASITFLDTPG 246 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~-------------------~~~gtT~di~~~~v~~~----~g~~v~liDTpG 246 (708)
++|+++||+|+|||||+++|+....... ...|+|.+.....+.+. ..+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 3799999999999999999986443221 22355554444443331 357899999999
Q ss_pred cchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC
Q 005218 247 HAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 247 ~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~ 302 (708)
|.+|...+..++..+|++++|+|++++...++...+..+...++|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99998888889999999999999999887777777777766789999999999985
No 227
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.71 E-value=6.6e-17 Score=155.70 Aligned_cols=155 Identities=23% Similarity=0.281 Sum_probs=113.0
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvD 269 (708)
+|+++|++++|||||+++|.+..+.....+++..+.....+..+ ....+.+|||+|++.|..++...++.+|++++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999988876666665556655555552 34569999999999999888888999999999999
Q ss_pred ccCCCC----hhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHH
Q 005218 270 ADDGVM----PQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (708)
Q Consensus 270 a~~g~~----~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~ 345 (708)
.++... ..|...+......+.|+++++||.|+.....-.. ++.. .+....+ .+++++||+++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~-~~~~----~~~~~~~-~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSV-EEAQ----EFAKELG-VPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCH-HHHH----HHHHHTT-SEEEEEBTTTTTTHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchh-hHHH----HHHHHhC-CEEEEEECCCCCCHHHHHH
Confidence 987322 2333333333344689999999999864111000 1111 1111112 6899999999999999999
Q ss_pred HHHHHH
Q 005218 346 ALLLQA 351 (708)
Q Consensus 346 ~I~~~~ 351 (708)
.+.+.+
T Consensus 155 ~~i~~i 160 (162)
T PF00071_consen 155 ELIRKI 160 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 228
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.71 E-value=3.4e-17 Score=152.73 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=117.5
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.++|.++|.+|+|||||+-++....+......++..|+....+..+ +..++.+|||+|+++|..+...+++.|..+|+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV 90 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV 90 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence 4799999999999999999999988887666667788777777663 446889999999999999999999999999999
Q ss_pred EEccCCCChhHHHHHHH----h-hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMPQTLEAIAH----A-NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~q~~~~l~~----l-~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
||.+...+...++.|.. . ...++-.++|+||+|..+ ++.. -.+.++.+... ..+-++++||++.+|++.
T Consensus 91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V--~reEG~kfAr~-h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVV--DREEGLKFARK-HRCLFIECSAKTRENVQC 164 (209)
T ss_pred EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccc--cHHHHHHHHHh-hCcEEEEcchhhhccHHH
Confidence 99987544443444422 1 134555789999999742 1111 11223333221 235689999999999999
Q ss_pred HHHHHHHHH
Q 005218 343 LEVALLLQA 351 (708)
Q Consensus 343 L~~~I~~~~ 351 (708)
.|+.+...+
T Consensus 165 ~FeelveKI 173 (209)
T KOG0080|consen 165 CFEELVEKI 173 (209)
T ss_pred HHHHHHHHH
Confidence 888877643
No 229
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1.5e-16 Score=156.14 Aligned_cols=157 Identities=24% Similarity=0.300 Sum_probs=118.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc--ccccccCceEEeeeEEEEEecCCeeEEEeeCCCc----------chhhhhhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS--LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH----------AAFSAMRK 255 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~--~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~----------~~f~~~~~ 255 (708)
..+-|+++|++|||||||+|+|++.. ...+..||.|+.+..+.+.. .+.|+|.||. +.+..+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~----~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD----ELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC----cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 56789999999999999999999976 44588999999999887642 3899999993 23444444
Q ss_pred ccc---ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcc-hhhhhhhh-cccchhccCCcceEE
Q 005218 256 RGA---AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE-RVKNQLGA-EGLELEDWGGKVQVV 330 (708)
Q Consensus 256 ~~~---~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~-~~~~~l~~-~~~~~~~~~~~~~vi 330 (708)
.|+ ..-.++++++|+.++....+.+.+.++...++|+++++||+|....+.. +....+.+ .... ......++
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~---~~~~~~~~ 175 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP---PPDDQWVV 175 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC---CCccceEE
Confidence 554 2456789999999999999999999999999999999999999753321 11122221 1111 11111288
Q ss_pred EEeeecCCCchhHHHHHHHHH
Q 005218 331 EVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 331 ~vSAktg~GI~~L~~~I~~~~ 351 (708)
..|+.++.|+++|.+.|....
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EEecccccCHHHHHHHHHHHh
Confidence 999999999999999988754
No 230
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.70 E-value=1.1e-16 Score=189.10 Aligned_cols=152 Identities=18% Similarity=0.266 Sum_probs=116.5
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhh----------hcc-
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR----------KRG- 257 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~----------~~~- 257 (708)
.++|+++|+||+|||||+|+|++.+...++.+|+|.+.....+.. ++.++.++||||+.++.... ..+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 468999999999999999999998877788899999987777776 88899999999988764321 112
Q ss_pred -cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeee
Q 005218 258 -AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 258 -~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
...+|++++|+|+++. ......+.++.+.++|+++++||+|+.+... ....+.+. +.+ .+|++++||+
T Consensus 82 ~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~------~~L--G~pVvpiSA~ 151 (772)
T PRK09554 82 LSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALS------ARL--GCPVIPLVST 151 (772)
T ss_pred hccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHH------HHh--CCCEEEEEee
Confidence 2479999999999873 3344555667778999999999999863221 11111121 111 3589999999
Q ss_pred cCCCchhHHHHHHHHH
Q 005218 336 KKTGLDDLEVALLLQA 351 (708)
Q Consensus 336 tg~GI~~L~~~I~~~~ 351 (708)
+|.|+++|.+.+....
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999988754
No 231
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.9e-17 Score=158.41 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=121.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
....++|+++|++++|||-|+.++...++......++..++....+.++ .-.+..||||+|+++|......+++.|-++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 4456789999999999999999999999998888888888888887773 335679999999999999999999999999
Q ss_pred EEEEEccCCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 265 VLVVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 265 llVvDa~~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
++|||.+...+.+ |+..++.....++++++|+||+||.... .+ -.+.+..+.+ .....++++||+.+.|+
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lr--aV---~te~~k~~Ae-~~~l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLR--AV---PTEDGKAFAE-KEGLFFLETSALDATNV 164 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhcc--cc---chhhhHhHHH-hcCceEEEecccccccH
Confidence 9999998754433 3333333345688999999999995411 00 0111111111 11347899999999999
Q ss_pred hhHHHHHHHH
Q 005218 341 DDLEVALLLQ 350 (708)
Q Consensus 341 ~~L~~~I~~~ 350 (708)
++.|+.+...
T Consensus 165 e~aF~~~l~~ 174 (222)
T KOG0087|consen 165 EKAFERVLTE 174 (222)
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 232
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.70 E-value=7.2e-17 Score=156.27 Aligned_cols=149 Identities=15% Similarity=0.148 Sum_probs=98.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.+|+++|++|+|||||+.++....+.....+ +..++ ...+.+ +| ..+.+|||+|++.. .+++.+|++++|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-~~~~~-~~~i~~-~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv 72 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESP-EGGRF-KKEVLV-DGQSHLLLIRDEGGAPDA-----QFASWVDAVIFV 72 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCC-Cccce-EEEEEE-CCEEEEEEEEECCCCCch-----hHHhcCCEEEEE
Confidence 3799999999999999999987766543322 22222 233445 55 56899999998752 345789999999
Q ss_pred EEccCCCChhHHH-HHHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMPQTLE-AIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~q~~~-~l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|.++....+... .+..+. ..+.|+++|+||+|+...+...+.... +..+......+++++|||++|.||++
T Consensus 73 ~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~---~~~~~~~~~~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 73 FSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDAR---ARQLCADMKRCSYYETCATYGLNVER 149 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHH---HHHHHHHhCCCcEEEEecCCCCCHHH
Confidence 9999855444422 222222 146799999999998532222222111 11111111236899999999999999
Q ss_pred HHHHHHH
Q 005218 343 LEVALLL 349 (708)
Q Consensus 343 L~~~I~~ 349 (708)
+|+.+.+
T Consensus 150 ~f~~~~~ 156 (158)
T cd04103 150 VFQEAAQ 156 (158)
T ss_pred HHHHHHh
Confidence 9998875
No 233
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.1e-17 Score=175.92 Aligned_cols=255 Identities=24% Similarity=0.280 Sum_probs=188.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc------------------cccccCceEEeeeEEEEEecCCeeEEEeeCCCcch
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL------------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~------------------~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~ 249 (708)
+-.+|+|+.|.++||||...++++-.. ++....|+|.......+.| .|+++++||||||-+
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghvd 114 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHVD 114 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcce
Confidence 446899999999999999999865221 2234579999988888888 999999999999999
Q ss_pred hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhh----c---------
Q 005218 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGA----E--------- 316 (708)
Q Consensus 250 f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~----~--------- 316 (708)
|.-..++.++.-|.++.|+|++.|+.+|++..|++..+.++|-+.++||||...++.+.....+.+ .
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~ 194 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIG 194 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEeccc
Confidence 999999999999999999999999999999999999999999999999999865432111111000 0
Q ss_pred --------------------------cc----------------------------------------chhcc-------
Q 005218 317 --------------------------GL----------------------------------------ELEDW------- 323 (708)
Q Consensus 317 --------------------------~~----------------------------------------~~~~~------- 323 (708)
+. .+++|
T Consensus 195 eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i 274 (753)
T KOG0464|consen 195 EAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKI 274 (753)
T ss_pred ccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcccccc
Confidence 00 00011
Q ss_pred ---------------CCcceEEEEeeecCCCchhHHHHHHHHHHHccccc-----ccCCCcceeEEEEEeeCCCCcEEEE
Q 005218 324 ---------------GGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-----RVDGPAQAYVVEARLDKGRGPLTTA 383 (708)
Q Consensus 324 ---------------~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~-----~~~~p~~~~V~e~~~~~~~G~v~~~ 383 (708)
....|+..-||.++.||.-|+++.......++.+. .....+...-+++..++.+|+.+..
T Consensus 275 ~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflqwykddlcalafkvlhdkqrg~l~fm 354 (753)
T KOG0464|consen 275 DAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFM 354 (753)
T ss_pred CHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhcccccCceeEE
Confidence 01257888999999999999998876432221110 1223344555677788999999999
Q ss_pred EEEeeEEcCCCEEEEccccc--eEEEE---ecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeC
Q 005218 384 IVKAGTLVCGQHVVVGHEWG--RIRAI---RDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVD 444 (708)
Q Consensus 384 ~V~~G~L~~gd~v~~g~~~~--kVr~i---~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~ 444 (708)
++.+|++++.-.+.--+..+ .+..+ +......+.+..+|......|++.. .+||+++.-.
T Consensus 355 riysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~t-atgdtivask 419 (753)
T KOG0464|consen 355 RIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHT-ATGDTIVASK 419 (753)
T ss_pred EEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceee-ccCCeEEecc
Confidence 99999999998877643222 22222 2234456788999999999999974 7999977543
No 234
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=2.1e-16 Score=158.49 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=98.5
Q ss_pred CEEEEEecCCCCchHHHH-HhhcCcc-----cccccCceEE-e-eeEE-------EEEe-cCCeeEEEeeCCCcchhhhh
Q 005218 190 PVVTVMGHVDHGKTSLLD-ALRQTSL-----VAKEAGGITQ-H-MGAF-------VVGM-STGASITFLDTPGHAAFSAM 253 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln-~L~~~~~-----~~~~~~gtT~-d-i~~~-------~v~~-~~g~~v~liDTpG~~~f~~~ 253 (708)
.+|+++|++|||||||+. ++.+..+ .....|++.. + +... .... +....+.||||||++. .+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KD 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hh
Confidence 689999999999999996 5544332 2233444421 2 1111 0112 1357899999999875 34
Q ss_pred hhcccccccEEEEEEEccCCCChhHHH-HH-HHhh--hcCCCEEEEEeCCCCCCCCcchh--------------hhhhhh
Q 005218 254 RKRGAAVTDIVVLVVAADDGVMPQTLE-AI-AHAN--AANVPIVVAINKCDKPAADPERV--------------KNQLGA 315 (708)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~q~~~-~l-~~l~--~~~~piIvViNK~Dl~~~~~~~~--------------~~~l~~ 315 (708)
+..+++.+|++++|+|.++..+.+... .| ..+. ..+.|+|+|+||+||........ .....+
T Consensus 81 ~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 160 (195)
T cd01873 81 RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPE 160 (195)
T ss_pred hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHH
Confidence 556789999999999998854433332 22 2222 24789999999999964211000 000011
Q ss_pred cccchhccCCcceEEEEeeecCCCchhHHHHHHHH
Q 005218 316 EGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 316 ~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
.+..+... ..+++++|||++|.|++++|+.+.+.
T Consensus 161 e~~~~a~~-~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 161 TGRAVAKE-LGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHH-hCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 11112111 12589999999999999999988753
No 235
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.68 E-value=1.5e-16 Score=183.98 Aligned_cols=145 Identities=24% Similarity=0.364 Sum_probs=111.2
Q ss_pred ecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh------hhcc--cccccEEEEE
Q 005218 196 GHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM------RKRG--AAVTDIVVLV 267 (708)
Q Consensus 196 G~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~------~~~~--~~~aDivllV 267 (708)
|.||+|||||+|+|.+.+...++.+|+|.+.....+.+ ++.++.+|||||+..+... ...+ ...+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 89999999999999998887788999999988877777 7889999999999877543 2222 2478999999
Q ss_pred EEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchh-hhhhhhcccchhccCCcceEEEEeeecCCCchhHHHH
Q 005218 268 VAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (708)
Q Consensus 268 vDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~ 346 (708)
+|+++ .+.+.....++.+.++|+++|+||+|+.+...... .+.+.+ .+ ++|++++||++|.|++++++.
T Consensus 80 vDat~--ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~------~l--g~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 80 VDASN--LERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEE------RL--GVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred ecCCc--chhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHH------Hc--CCCEEEEECCCCCCHHHHHHH
Confidence 99987 23455555666678999999999999853221111 111111 11 368999999999999999999
Q ss_pred HHHHH
Q 005218 347 LLLQA 351 (708)
Q Consensus 347 I~~~~ 351 (708)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98754
No 236
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.7e-16 Score=146.19 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=121.6
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
-++|+++|..|+|||.|+.++...-++.....++..|+.-.++..+ +..++.+|||+|+++|......+++.|+.+++|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 3689999999999999999999999988777777888777777663 446789999999999999999999999999999
Q ss_pred EEccCCC----ChhHHHHHHHhhhcCCCEEEEEeCCCCCCCC--cchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGV----MPQTLEAIAHANAANVPIVVAINKCDKPAAD--PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~----~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~--~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|.+... .++|+..+......++--|+|+||+|+.+.. +.++-+++.+. .+.-++++||+..+|++
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~--------qdmyfletsakea~nve 158 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEA--------QDMYFLETSAKEADNVE 158 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHh--------hhhhhhhhcccchhhHH
Confidence 9998743 4677777777766677789999999995421 12222222221 12347899999999999
Q ss_pred hHHHHHHHH
Q 005218 342 DLEVALLLQ 350 (708)
Q Consensus 342 ~L~~~I~~~ 350 (708)
.||..+...
T Consensus 159 ~lf~~~a~r 167 (213)
T KOG0095|consen 159 KLFLDLACR 167 (213)
T ss_pred HHHHHHHHH
Confidence 999877654
No 237
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.1e-16 Score=145.38 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=117.8
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
..++.|+|...+|||||+-+.+++++......+...|+...++.-. ...++.+|||+|++.+......+++.|+++||+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 3589999999999999999999999988777667777655554332 557899999999999999999999999999999
Q ss_pred EEccCCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCC---cchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 268 VAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 268 vDa~~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
+|.++..... |.-.++.....+.|+|+|+||||+.+.. .++...-..+.| +.+|++|||.+.|+
T Consensus 101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG---------fefFEtSaK~NinV 171 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLG---------FEFFETSAKENINV 171 (193)
T ss_pred EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhC---------hHHhhhcccccccH
Confidence 9998843332 3333344456799999999999995321 111111122222 36899999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
+++|+.+.....
T Consensus 172 k~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 172 KQVFERLVDIIC 183 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999999887543
No 238
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.67 E-value=3.2e-16 Score=160.62 Aligned_cols=169 Identities=25% Similarity=0.318 Sum_probs=116.8
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCc------chhh------h
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGH------AAFS------A 252 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~------~~f~------~ 252 (708)
-.+...|+++|.||+|||||.|.+.+..+.. +....||++-....+.. +..++.|+||||. +... .
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 3467899999999999999999999998865 77778888766666655 8899999999993 2221 2
Q ss_pred hhhcccccccEEEEEEEccCC---CChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcc--hhhhhhhh-----------c
Q 005218 253 MRKRGAAVTDIVVLVVAADDG---VMPQTLEAIAHANAANVPIVVAINKCDKPAADPE--RVKNQLGA-----------E 316 (708)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g---~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~--~~~~~l~~-----------~ 316 (708)
....++..||++++|+|+++. ..++.+..+... .++|-|+|+||+|....... .....+.. .
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 233567899999999999952 334444444333 37899999999998632100 00000000 0
Q ss_pred ccch----------hccCCcceEEEEeeecCCCchhHHHHHHHHHHHcccc
Q 005218 317 GLEL----------EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLK 357 (708)
Q Consensus 317 ~~~~----------~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~ 357 (708)
.+.. ..|...-.+|++||++|+||++|.++|..++...+++
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~ 276 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWK 276 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCC
Confidence 0000 1133345699999999999999999999876544443
No 239
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.67 E-value=2.4e-16 Score=145.12 Aligned_cols=159 Identities=19% Similarity=0.209 Sum_probs=120.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+.+|+|+|++|||||+-++..+.+..+++-++..|+...++.++ ...++.+|||+|++.|..+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 456899999999999999999999988998888888887777774 3467899999999999999999999999999999
Q ss_pred EccCCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 269 AADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 269 Da~~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
|.+++-... |++.++... ..+|-++|+||.|+++... ...-....+. .+..+.+|++||+...|++..|
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~Rrv---V~t~dAr~~A---~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRV---VDTEDARAFA---LQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCcccee---eehHHHHHHH---HhcCchheehhhhhcccchHHH
Confidence 999865433 333333222 3678899999999965321 1100000000 1124578999999999999999
Q ss_pred HHHHHHHHHcc
Q 005218 345 VALLLQAEMMN 355 (708)
Q Consensus 345 ~~I~~~~~~~~ 355 (708)
..|..+.-...
T Consensus 162 ~cit~qvl~~k 172 (198)
T KOG0079|consen 162 HCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHH
Confidence 99988765443
No 240
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=1.3e-15 Score=154.60 Aligned_cols=156 Identities=14% Similarity=0.143 Sum_probs=110.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
...+|+++|++|+|||||+++++...+.....++...++....+..+ +...+.+|||||++.|..++..++..+|++++
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~ 87 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAII 87 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEE
Confidence 34799999999999999999887766655555555555544444332 45789999999999998888888899999999
Q ss_pred EEEccCCCChhHHHHH-HHh--hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 267 VVAADDGVMPQTLEAI-AHA--NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l-~~l--~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|+|.++....+....| ..+ ...++|+++++||+|+...... .+.. .. ... ....++++||++|.|++++
T Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~~~-~~---~~~--~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 88 MFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--ARQI-TF---HRK--KNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HHHH-HH---HHH--cCCEEEEEeCCCCCCHHHH
Confidence 9999875443333322 111 1247899999999998532111 1111 00 011 1347899999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
+.+|.+.+
T Consensus 160 f~~ia~~l 167 (215)
T PTZ00132 160 FLWLARRL 167 (215)
T ss_pred HHHHHHHH
Confidence 99998765
No 241
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=2.9e-16 Score=165.13 Aligned_cols=122 Identities=27% Similarity=0.389 Sum_probs=96.7
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccc------------------cCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKE------------------AGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~------------------~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~ 252 (708)
+|+++||+|+|||||+++|+........ ..++|.......+.+ +++.+++|||||+.+|..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADFVG 79 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHHHH
Confidence 5899999999999999999753322111 123444444455566 789999999999999988
Q ss_pred hhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhh
Q 005218 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQL 313 (708)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l 313 (708)
.+..+++.+|++++|+|++++...++...|..+...++|.++++||+|+...+.......+
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l 140 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAAL 140 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHH
Confidence 8888999999999999999999889889998888889999999999999765544444443
No 242
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.7e-16 Score=164.15 Aligned_cols=257 Identities=25% Similarity=0.301 Sum_probs=183.7
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcCccc-------------------------------ccccCceEEeeeEEEEEe
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLV-------------------------------AKEAGGITQHMGAFVVGM 233 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~-------------------------------~~~~~gtT~di~~~~v~~ 233 (708)
......+++++||+++||||+-+.++..... .....|-|..++...+..
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 3467889999999999999998876432110 112246677777777777
Q ss_pred cCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCC-------ChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCC
Q 005218 234 STGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-------MPQTLEAIAHANAANVP-IVVAINKCDKPAAD 305 (708)
Q Consensus 234 ~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~-------~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~ 305 (708)
...+++++|+|||..|...+..++.+||+.++|+.+..|- -.|+.++...++..++. .|+++||||-+..+
T Consensus 155 -e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 155 -ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred -cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 7789999999999999999999999999999999986543 24899999888877776 89999999987544
Q ss_pred c--chhhhhhhhcccchh--cc--CCcceEEEEeeecCCCchhHHHHHH----------HHHHHcccccccCCCcceeEE
Q 005218 306 P--ERVKNQLGAEGLELE--DW--GGKVQVVEVSAVKKTGLDDLEVALL----------LQAEMMNLKARVDGPAQAYVV 369 (708)
Q Consensus 306 ~--~~~~~~l~~~~~~~~--~~--~~~~~vi~vSAktg~GI~~L~~~I~----------~~~~~~~~~~~~~~p~~~~V~ 369 (708)
+ ++..+........+. .+ ..+..++++|..+|.++.+..+... .+-.........++|+...|.
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~ 313 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVA 313 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhccCcccccCCCCEEeehh
Confidence 3 332221111111111 11 1345789999999999988764111 111122344567899998888
Q ss_pred EEEeeCCCCcEEEEEEEeeEEcCCCEEEEcccc--ceEEEEecccCCcccccCCCCcEEEe--ccCCCC-CCCCeEEEeC
Q 005218 370 EARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW--GRIRAIRDMVGKSTDKARPAMPVEIE--GLKGLP-MAGDDIIVVD 444 (708)
Q Consensus 370 e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~--~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~~~~-~~Gd~~~~v~ 444 (708)
+-+.+ .|+++.|.+.+|+++.|+.+++.|.. -.|.+|+++ ...++.+.||+.|.+. |+..-. .+|-.+...+
T Consensus 314 ~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~d-dvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~ 390 (501)
T KOG0459|consen 314 NKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSD-DVETDRVAPGENVKLRLKGIEEEDISPGFILCSPN 390 (501)
T ss_pred hhccc--cceEEEEEecccceecCCeEEEccCCcceEEEEEecc-cceeeeccCCcceEEEecccchhhccCceEEecCC
Confidence 87754 67999999999999999999998854 457888876 6678999999998864 544211 4674444443
Q ss_pred C
Q 005218 445 S 445 (708)
Q Consensus 445 ~ 445 (708)
|
T Consensus 391 n 391 (501)
T KOG0459|consen 391 N 391 (501)
T ss_pred C
Confidence 3
No 243
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=99.65 E-value=9.2e-16 Score=135.50 Aligned_cols=93 Identities=47% Similarity=0.751 Sum_probs=90.3
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccceEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeC
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVD 444 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~ 444 (708)
.++|+|+..++++|.+++++|++|+|++||++++|..+|+||+|.+.+|+.+.+|.||++|.+.||++.|.+||.|.+++
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~GkVr~~~d~~g~~v~~a~Ps~~v~i~g~~~~p~aGd~~~~~~ 81 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTPVEILGLKDVPKAGDGVLVVA 81 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCccceEEEEECCCCCCccccCCCCCEEEeeecCCccCCCEEEEeC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhhhhhh
Q 005218 445 SEERARMLSSGRK 457 (708)
Q Consensus 445 ~~~~a~~~~~~~~ 457 (708)
++++|++++++|+
T Consensus 82 ~e~~a~~~~~~r~ 94 (95)
T cd03701 82 SEKEAKEIGSYRL 94 (95)
T ss_pred CCHHHHHhhHhhc
Confidence 9999999998874
No 244
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.65 E-value=5.9e-16 Score=143.96 Aligned_cols=150 Identities=22% Similarity=0.234 Sum_probs=103.7
Q ss_pred EEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccC
Q 005218 194 VMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD 272 (708)
Q Consensus 194 IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~ 272 (708)
++|++|+|||||+++|.+..........+..+......... .+..+.+|||||+..+.......+..+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999877632222222233333333321 36789999999999888777778899999999999998
Q ss_pred CCChhHHHHH-----HHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHH
Q 005218 273 GVMPQTLEAI-----AHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVAL 347 (708)
Q Consensus 273 g~~~q~~~~l-----~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I 347 (708)
+...+....+ ......++|+++++||+|+.............. .......+++++|++++.|+++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQ-----LAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHH-----HHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 6544444432 233456899999999999965432221110000 011224689999999999999999987
Q ss_pred H
Q 005218 348 L 348 (708)
Q Consensus 348 ~ 348 (708)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 5
No 245
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2.7e-15 Score=144.30 Aligned_cols=158 Identities=27% Similarity=0.301 Sum_probs=124.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-------cccCc---eEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-------KEAGG---ITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKR 256 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-------~~~~g---tT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~ 256 (708)
-...+|++.|+.++||||++.++....... ....+ ||.-.....+.+.++..+.|+|||||++|.-|+.-
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~ 87 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEI 87 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHH
Confidence 456899999999999999999998766311 11223 66655555666646699999999999999999999
Q ss_pred ccccccEEEEEEEccCCCChhHHHHHHHhhhcC-CCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeee
Q 005218 257 GAAVTDIVVLVVAADDGVMPQTLEAIAHANAAN-VPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~-~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
..+.++.+++++|.+.+......+.+..+...+ +|++|++||.||.++.+.+...++..... ...|+|+++|.
T Consensus 88 l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~------~~~~vi~~~a~ 161 (187)
T COG2229 88 LSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL------LSVPVIEIDAT 161 (187)
T ss_pred HhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc------CCCceeeeecc
Confidence 999999999999999987776677777777767 99999999999988765444333332221 24689999999
Q ss_pred cCCCchhHHHHHHHH
Q 005218 336 KKTGLDDLEVALLLQ 350 (708)
Q Consensus 336 tg~GI~~L~~~I~~~ 350 (708)
.++|..+.++.+...
T Consensus 162 e~~~~~~~L~~ll~~ 176 (187)
T COG2229 162 EGEGARDQLDVLLLK 176 (187)
T ss_pred cchhHHHHHHHHHhh
Confidence 999999988877653
No 246
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=9.7e-16 Score=141.74 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=115.1
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
-.+++++|+.|.|||.|+.++....+......++..++....++.. +..++.+|||+|++.|......+++.|-.+++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 4689999999999999999999999887777778888888887773 336789999999999999999999999999999
Q ss_pred EEccCCCCh----hHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 268 VAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 268 vDa~~g~~~----q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+|++..... .|+..++.+...++-+|+++||.||... +-...+....+..+ ....+.++||+||+|+++.
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~---R~VtflEAs~FaqE---nel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE---REVTFLEASRFAQE---NELMFLETSALTGENVEEA 162 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcc---cceeeeeecccccccHHHH
Confidence 999874333 2333334455567779999999999532 21111111111111 1246899999999999987
Q ss_pred HHHHH
Q 005218 344 EVALL 348 (708)
Q Consensus 344 ~~~I~ 348 (708)
|-...
T Consensus 163 Fl~c~ 167 (214)
T KOG0086|consen 163 FLKCA 167 (214)
T ss_pred HHHHH
Confidence 65443
No 247
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.63 E-value=3.4e-15 Score=143.10 Aligned_cols=152 Identities=21% Similarity=0.324 Sum_probs=103.7
Q ss_pred EEEEecCCCCchHHHHHhhcCccc--ccccCceEEeeeEEEEEecCCeeEEEeeCCCcch----------hhhhhhccc-
Q 005218 192 VTVMGHVDHGKTSLLDALRQTSLV--AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA----------FSAMRKRGA- 258 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~~~~--~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~----------f~~~~~~~~- 258 (708)
|+++|++|+|||||+|.|.+.... .+...+.|.+.... .. + ..+.+|||||+.. +......++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~-~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NV-N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--Ec-c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 799999999999999999954443 34445566554332 22 2 3899999999643 222222233
Q ss_pred --ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcch-hhhhhhhcccchhccCCcceEEEEeee
Q 005218 259 --AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER-VKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 259 --~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~-~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
...+++++++|.++.......+.+..+...+.|+++++||+|+....... ....+. ..+..+....+++++||+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIK---KELKLFEIDPPIILFSSL 154 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHH---HHHHhccCCCceEEEecC
Confidence 45688999999988766666677777777789999999999995422111 111111 111112334689999999
Q ss_pred cCCCchhHHHHHHHH
Q 005218 336 KKTGLDDLEVALLLQ 350 (708)
Q Consensus 336 tg~GI~~L~~~I~~~ 350 (708)
++.|+++++++|...
T Consensus 155 ~~~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQGIDELRALIEKW 169 (170)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998764
No 248
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.62 E-value=2.8e-15 Score=154.48 Aligned_cols=148 Identities=24% Similarity=0.237 Sum_probs=105.7
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh-------hhhhcccccccE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS-------AMRKRGAAVTDI 263 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~-------~~~~~~~~~aDi 263 (708)
+|+++|.||+|||||+|+|.+........+++|.+.....+.+ ++..+.+|||||+.... ......++.+|+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 6899999999999999999988766666788888877777777 88999999999974322 233356889999
Q ss_pred EEEEEEccCCCChhHH-------------------------------------------HHHHH-h--------------
Q 005218 264 VVLVVAADDGVMPQTL-------------------------------------------EAIAH-A-------------- 285 (708)
Q Consensus 264 vllVvDa~~g~~~q~~-------------------------------------------~~l~~-l-------------- 285 (708)
+++|+|+++... +.. +.+.. +
T Consensus 81 il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 81 ILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999876321 100 00000 0
Q ss_pred -----------h--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 286 -----------N--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 286 -----------~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
. ...+|+++|+||+|+.+. ++.. .+ . ...+++++||++|.|+++|++.|.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~--~~~~-~~-------~---~~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI--EELD-LL-------A---RQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH--HHHH-HH-------h---cCCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0 112589999999999532 2211 11 1 1236899999999999999999988654
Q ss_pred H
Q 005218 353 M 353 (708)
Q Consensus 353 ~ 353 (708)
.
T Consensus 227 ~ 227 (233)
T cd01896 227 L 227 (233)
T ss_pred c
Confidence 3
No 249
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.62 E-value=5.4e-15 Score=149.21 Aligned_cols=159 Identities=25% Similarity=0.377 Sum_probs=106.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEe-cCCeeEEEeeCCCcchhhhhhhcccccc-cEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGM-STGASITFLDTPGHAAFSAMRKRGAAVT-DIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~-~~g~~v~liDTpG~~~f~~~~~~~~~~a-DivllV 267 (708)
++|+++|++|+|||||+++|....+..+. +.++..+....... ..+..+.+||||||..+..++..+++.+ +++|+|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V 79 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV 79 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence 57999999999999999999987664433 23333333322221 1467899999999999988888888888 999999
Q ss_pred EEccCCC--ChhHHHHHHH----h--hhcCCCEEEEEeCCCCCCCCcch-hhhhhhh----------cc-----------
Q 005218 268 VAADDGV--MPQTLEAIAH----A--NAANVPIVVAINKCDKPAADPER-VKNQLGA----------EG----------- 317 (708)
Q Consensus 268 vDa~~g~--~~q~~~~l~~----l--~~~~~piIvViNK~Dl~~~~~~~-~~~~l~~----------~~----------- 317 (708)
+|+++.. .....+.+.. . ...++|+++++||+|+..+.+.. +.+.+.. ..
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~ 159 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSK 159 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9998742 1122222211 1 12479999999999997554322 2222111 00
Q ss_pred ----------cchhccCCcceEEEEeeecCC-CchhHHHHHHH
Q 005218 318 ----------LELEDWGGKVQVVEVSAVKKT-GLDDLEVALLL 349 (708)
Q Consensus 318 ----------~~~~~~~~~~~vi~vSAktg~-GI~~L~~~I~~ 349 (708)
+.+......+.++++|++.+. |++.+.+||.+
T Consensus 160 ~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 160 ESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 011111235678999999876 69999988864
No 250
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.62 E-value=3.1e-15 Score=169.07 Aligned_cols=153 Identities=25% Similarity=0.335 Sum_probs=118.8
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh------hhccc--cc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM------RKRGA--AV 260 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~------~~~~~--~~ 260 (708)
..+|+++|.||+|||||+|+|++.+..+...||+|.+-....+.. .+..+.++|+||.-.+... ..+++ ..
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 356999999999999999999999999999999999999988888 8889999999996554322 11232 56
Q ss_pred ccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhh-hhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVK-NQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 261 aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~-~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
.|+++.|+|+++ .+..+...-++.+.++|+|+++|++|.....--++. +.+.+ . -.+|++++||++|.|
T Consensus 82 ~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~------~--LGvPVv~tvA~~g~G 151 (653)
T COG0370 82 PDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSK------L--LGVPVVPTVAKRGEG 151 (653)
T ss_pred CCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHH------H--hCCCEEEEEeecCCC
Confidence 799999999987 445556666777899999999999998432111111 11111 0 137999999999999
Q ss_pred chhHHHHHHHHHH
Q 005218 340 LDDLEVALLLQAE 352 (708)
Q Consensus 340 I~~L~~~I~~~~~ 352 (708)
+++|++.+.+..+
T Consensus 152 ~~~l~~~i~~~~~ 164 (653)
T COG0370 152 LEELKRAIIELAE 164 (653)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987654
No 251
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.62 E-value=2.4e-15 Score=156.93 Aligned_cols=214 Identities=25% Similarity=0.360 Sum_probs=153.1
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccc--------------cCceEEeeeEEEEEec--------------------
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKE--------------AGGITQHMGAFVVGMS-------------------- 234 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~--------------~~gtT~di~~~~v~~~-------------------- 234 (708)
..+|+++|.+++|||||+..|......... ..|-|..++...+.++
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 368999999999999999998764432110 1233322222111110
Q ss_pred ----CCeeEEEeeCCCcchhhhhhhccc--ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcch
Q 005218 235 ----TGASITFLDTPGHAAFSAMRKRGA--AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER 308 (708)
Q Consensus 235 ----~g~~v~liDTpG~~~f~~~~~~~~--~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~ 308 (708)
...-++|||.+||+.|.....-++ ...|...+++.++.|+...+.+++..+....+|+++|++|+|...++.-+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLq 292 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQ 292 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHH
Confidence 123589999999999987665444 67899999999999999999999999999999999999999997654211
Q ss_pred -hhh----hhhhccc-----c----------hhcc--CCcceEEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcce
Q 005218 309 -VKN----QLGAEGL-----E----------LEDW--GGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQA 366 (708)
Q Consensus 309 -~~~----~l~~~~~-----~----------~~~~--~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~ 366 (708)
... -+...+. . ..+| ..-+|+|.+|-.+|.|++-|...|..+... .....+.|+..
T Consensus 293 EtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls~R--~~~~E~~PAeF 370 (641)
T KOG0463|consen 293 ETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLSLR--RQLNENDPAEF 370 (641)
T ss_pred HHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcCcc--cccccCCCcce
Confidence 011 1111000 0 0011 124799999999999999887776554322 22335678888
Q ss_pred eEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcc-ccce
Q 005218 367 YVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH-EWGR 404 (708)
Q Consensus 367 ~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~-~~~k 404 (708)
.|.++++.++.|+++.|...+|+++.+|.+.+|+ ..|.
T Consensus 371 QIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~ 409 (641)
T KOG0463|consen 371 QIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGD 409 (641)
T ss_pred eecceEecCCcceEeecceeeeeEEeccEEEecCCCCCC
Confidence 9999999999999999999999999999999998 3443
No 252
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.61 E-value=6.1e-15 Score=148.59 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=101.1
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec------CCeeEEEeeCCCcchhhhhhhcccccccE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS------TGASITFLDTPGHAAFSAMRKRGAAVTDI 263 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~------~g~~v~liDTpG~~~f~~~~~~~~~~aDi 263 (708)
.+|+++|.+++|||||+++|.+..+...+.+++..++....+.+. ..+.+.||||+|++.|..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 479999999999999999999988877666666555544444432 23679999999999999999999999999
Q ss_pred EEEEEEccCCCChhHHHHH-HHhh----------------------hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccch
Q 005218 264 VVLVVAADDGVMPQTLEAI-AHAN----------------------AANVPIVVAINKCDKPAADPERVKNQLGAEGLEL 320 (708)
Q Consensus 264 vllVvDa~~g~~~q~~~~l-~~l~----------------------~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~ 320 (708)
+|+|+|.++..+.+.+..| ..+. ..++|+|+|+||+|+.+.....-...+...+...
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 9999999986444333332 1111 1368999999999995421111111111111111
Q ss_pred hccCCcceEEEEeeecCCCc
Q 005218 321 EDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 321 ~~~~~~~~vi~vSAktg~GI 340 (708)
..+ ..+.+..+|+....+
T Consensus 161 ~~~--~~~~i~~~c~~~~~~ 178 (202)
T cd04102 161 EQG--NAEEINLNCTNGRLL 178 (202)
T ss_pred Hhc--CCceEEEecCCcccc
Confidence 222 346788888866443
No 253
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.60 E-value=3.3e-15 Score=137.63 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=116.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvD 269 (708)
..+.++|-.|+|||||+|......+...-. .|+.+..+.+.- +...+.+||.||++.|..+++++++.++++++|+|
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmi--ptvGfnmrk~tk-gnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD 97 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMI--PTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD 97 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhc--ccccceeEEecc-CceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence 468999999999999999987766654333 344445555544 77899999999999999999999999999999999
Q ss_pred ccCC-CChhHHHHHHHh----hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 270 ADDG-VMPQTLEAIAHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 270 a~~g-~~~q~~~~l~~l----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
+.+. -.+...+.++.+ ...++|++|++||.|++++-... ..+..+++.. -....+.++.+||+...|++.++
T Consensus 98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~--~li~rmgL~s-itdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI--ALIERMGLSS-ITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH--HHHHHhCccc-cccceEEEEEEEEcCCccHHHHH
Confidence 9873 223334444333 23589999999999998753221 1122222211 11235679999999999999999
Q ss_pred HHHHHHHHH
Q 005218 345 VALLLQAEM 353 (708)
Q Consensus 345 ~~I~~~~~~ 353 (708)
+||.++...
T Consensus 175 ~Wli~hsk~ 183 (186)
T KOG0075|consen 175 DWLIEHSKS 183 (186)
T ss_pred HHHHHHhhh
Confidence 999987653
No 254
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.58 E-value=2.1e-14 Score=134.97 Aligned_cols=158 Identities=22% Similarity=0.235 Sum_probs=116.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.+..+|.|+|..|+||||++++|.+...... ..|.-+.-..+.+ +++.+++||..|+..+...|..|+..+|++|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i---~pt~gf~Iktl~~-~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTI---SPTLGFQIKTLEY-KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcccc---CCccceeeEEEEe-cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 4578999999999999999999998774321 1244444555566 89999999999999999999999999999999
Q ss_pred EEEccCCC-ChhHHHHHHHh----hhcCCCEEEEEeCCCCCCC-CcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGV-MPQTLEAIAHA----NAANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~-~~q~~~~l~~l----~~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|.++.. +.+....+..+ +..+.|++++.||.|+.++ +.+.+...+.-..+. ....++++-|||.||+++
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~---ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA---KSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc---cccCceEEEEeccccccH
Confidence 99998743 33444444433 2357899999999999743 233333222111110 123568999999999999
Q ss_pred hhHHHHHHHHH
Q 005218 341 DDLEVALLLQA 351 (708)
Q Consensus 341 ~~L~~~I~~~~ 351 (708)
.+-++||....
T Consensus 167 ~~gidWL~~~l 177 (185)
T KOG0073|consen 167 LEGIDWLCDDL 177 (185)
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 255
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.58 E-value=3.7e-15 Score=140.30 Aligned_cols=135 Identities=30% Similarity=0.355 Sum_probs=95.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCC----cchhhhhhhcccccccEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPG----HAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG----~~~f~~~~~~~~~~aDivl 265 (708)
.+|.++|++++|||||+++|.+..... .-|+.+. + . =.+||||| ++.|..........||+++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~----~KTq~i~-----~-~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY----KKTQAIE-----Y-Y---DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc----CccceeE-----e-c---ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 379999999999999999999866532 2233332 1 1 13499999 3334444444567999999
Q ss_pred EEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC--CCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 266 LVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP--AADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~--~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+|.|+++......- .++...+.|+|=|+||+|+. +.+.++..+.|...|. -.+|++|+.+|+|+++|
T Consensus 69 ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~--------~~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 69 LLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGV--------KEIFEVSAVTGEGIEEL 137 (143)
T ss_pred EEecCCCCCccCCc---hhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCC--------CCeEEEECCCCcCHHHH
Confidence 99999984322111 23344578999999999998 4455555555554443 25799999999999999
Q ss_pred HHHHH
Q 005218 344 EVALL 348 (708)
Q Consensus 344 ~~~I~ 348 (708)
.++|.
T Consensus 138 ~~~L~ 142 (143)
T PF10662_consen 138 KDYLE 142 (143)
T ss_pred HHHHh
Confidence 99875
No 256
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.58 E-value=4.1e-15 Score=139.22 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=117.0
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
..++.++|++-+|||||+..++...++.-..|+...|+....+++..| .++.||||+|++.|......+++++-.+++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 467899999999999999999999998877788888887777776555 468899999999999999999999999999
Q ss_pred EEEccCCCChhHHHHH----HHhhh-cCCC-EEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMPQTLEAI----AHANA-ANVP-IVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l----~~l~~-~~~p-iIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|.++....+..+.| ..... ..++ +.+|+.|+||.+.. .+..+-.+ .+... ....++++||++|.|+
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR--qVt~EEaE---klAa~-hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR--QVTAEEAE---KLAAS-HGMAFVETSAKNGCNV 161 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc--cccHHHHH---HHHHh-cCceEEEecccCCCcH
Confidence 9999985443333333 22211 2333 68899999996421 11111110 11111 1357999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++.+..|.+...
T Consensus 162 eEAF~mlaqeIf 173 (213)
T KOG0091|consen 162 EEAFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999999887543
No 257
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.57 E-value=8.7e-15 Score=133.86 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=83.6
Q ss_pred EEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh---------hhhhhccccc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF---------SAMRKRGAAV 260 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f---------~~~~~~~~~~ 260 (708)
+|+++|.+|+|||||+|+|++.+. ..+..+++|++.....+.+ ++..+.|+||||.... .....+.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 589999999999999999998654 4577788998886666666 8889999999996431 1123344589
Q ss_pred ccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeC
Q 005218 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINK 298 (708)
Q Consensus 261 aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK 298 (708)
+|++++|+|+++.......+.++.+. .+.|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 99999999988744455667777776 88999999998
No 258
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.4e-14 Score=151.19 Aligned_cols=238 Identities=26% Similarity=0.322 Sum_probs=165.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccc--------------cCceEEeeeEEEEEec--------------------C
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKE--------------AGGITQHMGAFVVGMS--------------------T 235 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~--------------~~gtT~di~~~~v~~~--------------------~ 235 (708)
.+|+++|..++|||||+..|.+....... ..|-|..+....+.++ .
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 58999999999999999999775543211 1233333332222221 2
Q ss_pred CeeEEEeeCCCcchhhhhhhcccc--cccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCC-cchhhhh
Q 005218 236 GASITFLDTPGHAAFSAMRKRGAA--VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERVKNQ 312 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~~~~~~~~--~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~-~~~~~~~ 312 (708)
..-++|+|.+||..|......++. ..|.+++|++|+.|+...+.+++..+...++|++++++|+|+.+.. .++..++
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~~ 327 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVKD 327 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHHHH
Confidence 246899999999999877666553 4789999999999999999999999999999999999999997532 1222222
Q ss_pred hhh----cccch-----------------hccCCcceEEEEeeecCCCchhHHHHHHHHHHHcccc---cccCCCcceeE
Q 005218 313 LGA----EGLEL-----------------EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLK---ARVDGPAQAYV 368 (708)
Q Consensus 313 l~~----~~~~~-----------------~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~---~~~~~p~~~~V 368 (708)
+.. .+... ...+.-+|+|.+|+.+|+|++-|...|.-+....... .-...|....|
T Consensus 328 l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~~e~~~L~q~~~eFqv 407 (591)
T KOG1143|consen 328 LSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTAEERIQLVQLPAEFQV 407 (591)
T ss_pred HHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCChHHHHHHhcCcceeeH
Confidence 221 11000 0112347999999999999988877665432111000 00234566678
Q ss_pred EEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc-cc-----eEEEEecccCCcccccCCCCcEEEe
Q 005218 369 VEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE-WG-----RIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 369 ~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~-~~-----kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
.+.+..+..|.++.|.+.+|.++.|+.+++||. .| +|-+|+ .+.....-..||++..+.
T Consensus 408 dEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~-Rnr~acrvvraGqaAsls 472 (591)
T KOG1143|consen 408 DEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR-RNRQACRVVRAGQAASLS 472 (591)
T ss_pred hHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee-ccccceeeecCccceeee
Confidence 899999999999999999999999999999983 23 345555 344555566677776654
No 259
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.57 E-value=2.3e-14 Score=145.28 Aligned_cols=163 Identities=19% Similarity=0.144 Sum_probs=115.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|++|+|||||+++|.+..+.....++++..+........ ....+.+|||+|+++|..++..++..++++++|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 789999999999999999999999988787777766665555441 2577999999999999999999999999999999
Q ss_pred EccC-CCChhHHHHHH-Hhh---hcCCCEEEEEeCCCCCCCCcchh--hhh-------hhhcccchhccCCcceEEEEee
Q 005218 269 AADD-GVMPQTLEAIA-HAN---AANVPIVVAINKCDKPAADPERV--KNQ-------LGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 269 Da~~-g~~~q~~~~l~-~l~---~~~~piIvViNK~Dl~~~~~~~~--~~~-------l~~~~~~~~~~~~~~~vi~vSA 334 (708)
|.+. ....+..+.|. .+. ..+.|+++++||+|+........ ... ................++++|+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 9986 22233333332 222 23689999999999975432110 000 0000100011011223899999
Q ss_pred e--cCCCchhHHHHHHHHHH
Q 005218 335 V--KKTGLDDLEVALLLQAE 352 (708)
Q Consensus 335 k--tg~GI~~L~~~I~~~~~ 352 (708)
+ ++.++.+++..+.....
T Consensus 166 ~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 166 KSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ccCCCcCHHHHHHHHHHHHH
Confidence 9 99999999988877653
No 260
>COG2262 HflX GTPases [General function prediction only]
Probab=99.56 E-value=2.3e-14 Score=153.49 Aligned_cols=154 Identities=23% Similarity=0.307 Sum_probs=115.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCc---------chhhhhhhcc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH---------AAFSAMRKRG 257 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~---------~~f~~~~~~~ 257 (708)
..-+.|+++|-+|+|||||+|+|++......+.-..|-|.....+.+.+|.++.|.||=|. +.|... ...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksT-LEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKST-LEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHH-HHH
Confidence 3568999999999999999999998888877777888888888888867899999999993 233322 234
Q ss_pred cccccEEEEEEEccCCCChhH----HHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEe
Q 005218 258 AAVTDIVVLVVAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~~~q~----~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vS 333 (708)
...||++++|+|++++...+. .+.+..+....+|+|+|.||+|+..... ....+.. . . ...+++|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~~-------~-~-~~~v~iS 337 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELER-------G-S-PNPVFIS 337 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhhh-------c-C-CCeEEEE
Confidence 678999999999998633222 2333444445789999999999864321 1111111 0 0 1489999
Q ss_pred eecCCCchhHHHHHHHHHH
Q 005218 334 AVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~~~ 352 (708)
|++|.|++.|++.|.....
T Consensus 338 A~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 338 AKTGEGLDLLRERIIELLS 356 (411)
T ss_pred eccCcCHHHHHHHHHHHhh
Confidence 9999999999999988764
No 261
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.56 E-value=1.9e-15 Score=136.85 Aligned_cols=179 Identities=20% Similarity=0.285 Sum_probs=124.7
Q ss_pred EEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEcc
Q 005218 194 VMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAAD 271 (708)
Q Consensus 194 IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~ 271 (708)
++|++.+|||.|+-++....+.. +-+.+...|+....+..+ ...++.+|||+|+++|......+++.||..++++|..
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999998877665543 445556667766666663 3467899999999999999999999999999999998
Q ss_pred CCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccch-hccCCcceEEEEeeecCCCchhHHHH
Q 005218 272 DGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLEL-EDWGGKVQVVEVSAVKKTGLDDLEVA 346 (708)
Q Consensus 272 ~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~-~~~~~~~~vi~vSAktg~GI~~L~~~ 346 (708)
+..+.. |+..+.......+.+.+++||+|+... +.... +.+..+ +.+ .+|+.++||+||.|++..|-.
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e---r~v~~--ddg~kla~~y--~ipfmetsaktg~nvd~af~~ 154 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE---RAVKR--DDGEKLAEAY--GIPFMETSAKTGFNVDLAFLA 154 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh---hcccc--chHHHHHHHH--CCCceeccccccccHhHHHHH
Confidence 855443 333344444556779999999999431 11100 011111 112 369999999999999999999
Q ss_pred HHHHHHHcccccccCCCcceeEEEEEeeCCCCcEE
Q 005218 347 LLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLT 381 (708)
Q Consensus 347 I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~ 381 (708)
|.+....+....++.+.+. ..++..+.++|.++
T Consensus 155 ia~~l~k~~~~~~~~~~~~--~~~~v~~~~k~eia 187 (192)
T KOG0083|consen 155 IAEELKKLKMGAPPEGEFA--DHDSVADEGKGEIA 187 (192)
T ss_pred HHHHHHHhccCCCCCCccc--cchhHHhcCCCccc
Confidence 9887766665555554443 22334455666654
No 262
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=7e-15 Score=136.87 Aligned_cols=157 Identities=18% Similarity=0.159 Sum_probs=110.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
-.++++++|..=+|||||+-++....+......+.--.+....+++. ....+.+|||+|++.|..+-+-|++.+|.+++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 35789999999999999999999888765443322222333333331 33578999999999999999999999999999
Q ss_pred EEEccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 267 VVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 267 VvDa~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+|.+|....|-. ..++......+.+++|+||+||.....-. .++...+. +. -...++++||+.+.||.+
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt-~qeAe~YA---es--vGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVT-RQEAEAYA---ES--VGALYMETSAKDNVGISE 165 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhh-HHHHHHHH---Hh--hchhheecccccccCHHH
Confidence 9999986554433 33344444567799999999994321111 11111110 11 124689999999999999
Q ss_pred HHHHHHHH
Q 005218 343 LEVALLLQ 350 (708)
Q Consensus 343 L~~~I~~~ 350 (708)
||+.|...
T Consensus 166 lFe~Lt~~ 173 (218)
T KOG0088|consen 166 LFESLTAK 173 (218)
T ss_pred HHHHHHHH
Confidence 99988764
No 263
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.53 E-value=5.3e-14 Score=141.28 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=102.2
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccc-ccc--C--ceEEeeeEEEEEecCCeeEEEeeCCCcchhhh-----hhhccc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVA-KEA--G--GITQHMGAFVVGMSTGASITFLDTPGHAAFSA-----MRKRGA 258 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~--~--gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~-----~~~~~~ 258 (708)
+++|+++|++|+|||||+|+|++..... ... + .+|+.... +.......+.+|||||...... +....+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHHHHHHHhCc
Confidence 4689999999999999999999855422 111 1 12322221 1211345799999999754322 222346
Q ss_pred ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc----------chhhhhhhhcccch-hc-cCCc
Q 005218 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP----------ERVKNQLGAEGLEL-ED-WGGK 326 (708)
Q Consensus 259 ~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~----------~~~~~~l~~~~~~~-~~-~~~~ 326 (708)
..+|++++|.| +.....+...+..+...+.|+++|+||+|+...+. +++.+.+.+..... .. ....
T Consensus 79 ~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 156 (197)
T cd04104 79 SEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSE 156 (197)
T ss_pred cCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 78899998854 34566666777777777899999999999943221 12222222211111 11 1234
Q ss_pred ceEEEEeee--cCCCchhHHHHHHHHHH
Q 005218 327 VQVVEVSAV--KKTGLDDLEVALLLQAE 352 (708)
Q Consensus 327 ~~vi~vSAk--tg~GI~~L~~~I~~~~~ 352 (708)
.+++.+|+. .+.|+..|.+.|...+.
T Consensus 157 p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 157 PPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred CCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 579999998 68999999999887543
No 264
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.7e-14 Score=136.76 Aligned_cols=157 Identities=22% Similarity=0.267 Sum_probs=117.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
+..+|+++|--|+||||++..|...+...+ .|++ .+....+.+ .+..+++||..|+..+...+..|+..++++|||
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTi--GfnVE~v~y-kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTI--GFNVETVEY-KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV 91 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCcc--ccceeEEEE-cceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence 456899999999999999999977666544 4444 444555666 789999999999999999999999999999999
Q ss_pred EEccCCC-ChhHHHHHH-Hhhh---cCCCEEEEEeCCCCCCC-CcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGV-MPQTLEAIA-HANA---ANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~-~~q~~~~l~-~l~~---~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|++|.. .+...+.+. .+.. .+.|++++.||.|++++ +..++.+.+....+... ...+..++|.+|+|+.
T Consensus 92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~----~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSR----NWHIQSTCAISGEGLY 167 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCC----CcEEeeccccccccHH
Confidence 9999832 222333332 2322 37899999999999765 33444444443333322 3367889999999999
Q ss_pred hHHHHHHHHHH
Q 005218 342 DLEVALLLQAE 352 (708)
Q Consensus 342 ~L~~~I~~~~~ 352 (708)
+-+++|...+.
T Consensus 168 egl~wl~~~~~ 178 (181)
T KOG0070|consen 168 EGLDWLSNNLK 178 (181)
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 265
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=6.8e-14 Score=145.84 Aligned_cols=158 Identities=23% Similarity=0.296 Sum_probs=112.7
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcch--hhh----hh--hc
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA--FSA----MR--KR 256 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~--f~~----~~--~~ 256 (708)
+-+..+.|+|.|+||||||||++.|...+..+.+.|.||..+.-.++.. ++.+++++||||.-+ +.. .+ ..
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 4457899999999999999999999999999999999999988888887 888999999999421 111 11 11
Q ss_pred cc-ccccEEEEEEEccC--CCCh-hHHHHHHHhh-hcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEE
Q 005218 257 GA-AVTDIVVLVVAADD--GVMP-QTLEAIAHAN-AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVV 330 (708)
Q Consensus 257 ~~-~~aDivllVvDa~~--g~~~-q~~~~l~~l~-~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi 330 (708)
++ .-+++++|++|++. |..- ....++..++ ..+.|+++|+||+|..+.. .++....+...+ .....
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~--------~~~~~ 314 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEG--------GEEPL 314 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhc--------ccccc
Confidence 22 45789999999986 4432 3334444444 3467999999999986321 112222221111 12356
Q ss_pred EEeeecCCCchhHHHHHHHHH
Q 005218 331 EVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 331 ~vSAktg~GI~~L~~~I~~~~ 351 (708)
.+|+..+.+++.+.+.+...+
T Consensus 315 ~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 315 KISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred ceeeeehhhHHHHHHHHHHHh
Confidence 789999999999888777653
No 266
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.52 E-value=6.8e-14 Score=140.21 Aligned_cols=159 Identities=24% Similarity=0.253 Sum_probs=117.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+..+|+++|.+|+|||+|+.++....+...+.|++. |.....+.++ ....+.++||+|+++|..++..+++.+|+.++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 356899999999999999999999999877776665 4444444442 44678899999999999999999999999999
Q ss_pred EEEccCCCChhHHHHH-HHh----hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 267 VVAADDGVMPQTLEAI-AHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l-~~l----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
||+.++..+.+....+ ..+ ....+|+++|+||+|+..... + -.+.+..+.. ...++++++||+...+++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~--V---~~eeg~~la~-~~~~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQ--V---SEEEGKALAR-SWGCAFIETSAKLNYNVD 154 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccc--c---CHHHHHHHHH-hcCCcEEEeeccCCcCHH
Confidence 9999985544443322 222 124679999999999964211 1 1111111111 124679999999999999
Q ss_pred hHHHHHHHHHHH
Q 005218 342 DLEVALLLQAEM 353 (708)
Q Consensus 342 ~L~~~I~~~~~~ 353 (708)
++|..|......
T Consensus 155 ~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 155 EVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 267
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.2e-14 Score=128.10 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=109.2
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.++-.|+|+-|+|||.|+..+....+......++...++...++.. ...++.+|||+|+++|......+++.+-.+++|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv 90 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence 3578899999999999999999988877777777777777777763 346789999999999999999999999999999
Q ss_pred EEccCCCChhHHH----HHHHhhhcCCCEEEEEeCCCCCCCC---cchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 268 VAADDGVMPQTLE----AIAHANAANVPIVVAINKCDKPAAD---PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 268 vDa~~g~~~q~~~----~l~~l~~~~~piIvViNK~Dl~~~~---~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
+|.+....-..+. ..+.+...+.-+++++||.||.... .++.++...+. ...++++||+||.|+
T Consensus 91 yditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeen---------gl~fle~saktg~nv 161 (215)
T KOG0097|consen 91 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEEN---------GLMFLEASAKTGQNV 161 (215)
T ss_pred EEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhc---------CeEEEEecccccCcH
Confidence 9998744322222 2233334455589999999995321 11111111111 246899999999999
Q ss_pred hhHH
Q 005218 341 DDLE 344 (708)
Q Consensus 341 ~~L~ 344 (708)
++.|
T Consensus 162 edaf 165 (215)
T KOG0097|consen 162 EDAF 165 (215)
T ss_pred HHHH
Confidence 8765
No 268
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.49 E-value=4.7e-14 Score=139.28 Aligned_cols=160 Identities=24% Similarity=0.319 Sum_probs=119.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEe--cCCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGM--STGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~--~~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
..++++++|...+|||+|+..+....+...+.|+....+... +.. ...+.+.||||+|+++|..+|...+..+|++|
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 357899999999999999999999888888888888554443 333 24466899999999999999988999999999
Q ss_pred EEEEccCCC-----ChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhh---------cccchhccCCcceEEE
Q 005218 266 LVVAADDGV-----MPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGA---------EGLELEDWGGKVQVVE 331 (708)
Q Consensus 266 lVvDa~~g~-----~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~vi~ 331 (708)
++|+..+.. ...|...+.+.. .+.|+|+|++|.||.+ ++ ...+.+.. .+..+....+...+++
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~-d~-~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~E 158 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRD-DP-STLEKLQRQGLEPVTYEQGLELAKEIGAVKYLE 158 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhh-CH-HHHHHHHhccCCcccHHHHHHHHHHhCcceeee
Confidence 999987632 233444444333 6899999999999973 22 22222221 2233334445678999
Q ss_pred EeeecCCCchhHHHHHHHHH
Q 005218 332 VSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~~~~ 351 (708)
|||++..|+.+.|+.-...+
T Consensus 159 cSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 159 CSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred ehhhhhCCcHHHHHHHHHHH
Confidence 99999999999998877654
No 269
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.49 E-value=1.2e-13 Score=142.79 Aligned_cols=154 Identities=25% Similarity=0.207 Sum_probs=109.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh-------hhhhhccccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-------SAMRKRGAAV 260 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f-------~~~~~~~~~~ 260 (708)
--..|.++|-||+|||||||+|......+.+.+.||....-..+.+++...+++-|.||.-.- .....+.+..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 446799999999999999999999988888889999886666777755566999999995332 1222345678
Q ss_pred ccEEEEEEEccCC---CChhHHHH-HHHhh-----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEE
Q 005218 261 TDIVVLVVAADDG---VMPQTLEA-IAHAN-----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVE 331 (708)
Q Consensus 261 aDivllVvDa~~g---~~~q~~~~-l~~l~-----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 331 (708)
|+..+||+|.+.+ ...+.+.. +..+. ..+.|.++|+||+|++++. .....++... .....+++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-~~~l~~L~~~-------lq~~~V~p 346 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-KNLLSSLAKR-------LQNPHVVP 346 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-HHHHHHHHHH-------cCCCcEEE
Confidence 9999999999875 22222222 22221 2467999999999996322 1222222221 11225999
Q ss_pred EeeecCCCchhHHHHHHH
Q 005218 332 VSAVKKTGLDDLEVALLL 349 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~~ 349 (708)
+||++++|+.+|++.|..
T Consensus 347 vsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLRE 364 (366)
T ss_pred eeeccccchHHHHHHHhh
Confidence 999999999999998765
No 270
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.48 E-value=2.5e-13 Score=136.10 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=108.1
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccc--cCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh-------hh----hc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKE--AGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA-------MR----KR 256 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~--~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~-------~~----~~ 256 (708)
++|+++|++|+|||||+|+|++....... .++.|++.......+ ++..++++||||..+... .. ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 47999999999999999999988765433 567888877777777 889999999999654321 11 12
Q ss_pred ccccccEEEEEEEccCCCChhHHHHHHHhhhc-----CCCEEEEEeCCCCCCCCcchhhhhhhhcc----cchhccCCcc
Q 005218 257 GAAVTDIVVLVVAADDGVMPQTLEAIAHANAA-----NVPIVVAINKCDKPAADPERVKNQLGAEG----LELEDWGGKV 327 (708)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~-----~~piIvViNK~Dl~~~~~~~~~~~l~~~~----~~~~~~~~~~ 327 (708)
.....|++|+|+|+.+ ....+...++.+... -.++++++|++|....+ .+.+.+.... ...+..++
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~--~~~~~~~~~~~~l~~l~~~c~~-- 154 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG--TLEDYLENSCEALKRLLEKCGG-- 154 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC--cHHHHHHhccHHHHHHHHHhCC--
Confidence 3467899999999987 777777777666542 25789999999976432 2221111110 01112222
Q ss_pred eEEEE-----eeecCCCchhHHHHHHHHHHH
Q 005218 328 QVVEV-----SAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 328 ~vi~v-----SAktg~GI~~L~~~I~~~~~~ 353 (708)
.++.. |+..+.++++|++.|......
T Consensus 155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 12222 467788999999999887654
No 271
>PLN00023 GTP-binding protein; Provisional
Probab=99.47 E-value=2e-13 Score=144.92 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=88.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec--------------CCeeEEEeeCCCcchhhhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--------------TGASITFLDTPGHAAFSAM 253 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~--------------~g~~v~liDTpG~~~f~~~ 253 (708)
...+|+++|+.+||||||+++|.+..+.....+++..++....+.++ ..+.+.||||+|++.|..+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 45799999999999999999999888776666666655544444431 2367999999999999999
Q ss_pred hhcccccccEEEEEEEccCCCChhHHHHH-HHhhh---------------cCCCEEEEEeCCCCCC
Q 005218 254 RKRGAAVTDIVVLVVAADDGVMPQTLEAI-AHANA---------------ANVPIVVAINKCDKPA 303 (708)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~q~~~~l-~~l~~---------------~~~piIvViNK~Dl~~ 303 (708)
+..+++.+|++|+|+|.++......+..| ..+.. .++|+++|+||+||..
T Consensus 100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 99999999999999999884333222222 22221 2478999999999954
No 272
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.46 E-value=4.4e-13 Score=139.26 Aligned_cols=152 Identities=24% Similarity=0.281 Sum_probs=111.8
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh-h------hhhhccccccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-S------AMRKRGAAVTD 262 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f-~------~~~~~~~~~aD 262 (708)
..|+++|.|++|||||||.|++......+.+.||.......+.+ +|..++++|+||.-.- . ......++.||
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 57999999999999999999999999989999999999999999 9999999999995322 1 22334579999
Q ss_pred EEEEEEEccCCCC---------------------------------------------hhHHH-HHHHh-----------
Q 005218 263 IVVLVVAADDGVM---------------------------------------------PQTLE-AIAHA----------- 285 (708)
Q Consensus 263 ivllVvDa~~g~~---------------------------------------------~q~~~-~l~~l----------- 285 (708)
++++|+|+..... ..+.. .++..
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 9999999985221 00110 11100
Q ss_pred -----------h--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 286 -----------N--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 286 -----------~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
. ..-+|.++|+||+|+.+. +.+ ..+.+ ....+++||.+|.|+++|.+.|.+.+.
T Consensus 223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~--e~~-~~l~~----------~~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGL--EEL-ERLAR----------KPNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CCcHHHHHHHHhhcceeeeeEEEEecccccCH--HHH-HHHHh----------ccceEEEecccCCCHHHHHHHHHHhhC
Confidence 0 013589999999999752 221 12211 126899999999999999999998766
Q ss_pred Hcc
Q 005218 353 MMN 355 (708)
Q Consensus 353 ~~~ 355 (708)
...
T Consensus 290 liR 292 (365)
T COG1163 290 LIR 292 (365)
T ss_pred eEE
Confidence 543
No 273
>PRK09866 hypothetical protein; Provisional
Probab=99.43 E-value=1.1e-12 Score=147.97 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=80.1
Q ss_pred eeEEEeeCCCcch-----hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcC--CCEEEEEeCCCCCCCCc---
Q 005218 237 ASITFLDTPGHAA-----FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAAN--VPIVVAINKCDKPAADP--- 306 (708)
Q Consensus 237 ~~v~liDTpG~~~-----f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~--~piIvViNK~Dl~~~~~--- 306 (708)
..+.|+||||... +...+...+..+|+++||+|+..+..+.+...++.+...+ .|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 5789999999532 3334456789999999999999887788888888887766 49999999999863221
Q ss_pred chhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHH
Q 005218 307 ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
+.+...+... + .........++|+||++|.|++.|++.|...
T Consensus 310 E~Lle~V~~~-L-~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 310 DQVRALISGT-L-MKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHH-H-HhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 2222222111 0 0111123469999999999999999998874
No 274
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=6.5e-14 Score=130.56 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=108.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec----------CCeeEEEeeCCCcchhhhhhhcccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS----------TGASITFLDTPGHAAFSAMRKRGAA 259 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~----------~g~~v~liDTpG~~~f~~~~~~~~~ 259 (708)
++...+|++|+||||++.++....+...-+.+...|+....+.++ ....+.+|||+|+++|..+....++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 356778999999999999998888766555566667666655543 1147899999999999999999999
Q ss_pred cccEEEEEEEccCCCCh-hHHHHHHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEee
Q 005218 260 VTDIVVLVVAADDGVMP-QTLEAIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 260 ~aDivllVvDa~~g~~~-q~~~~l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSA 334 (708)
.|-..++++|.++.-.. .....+.+++ ..+..+|+++||+||.+... +.+.-. ......+ ..|+|++||
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~--Vs~~qa--~~La~ky--glPYfETSA 163 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV--VSEDQA--AALADKY--GLPYFETSA 163 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhh--hhHHHH--HHHHHHh--CCCeeeecc
Confidence 99999999999873221 2223333332 23445999999999964211 111000 0001122 369999999
Q ss_pred ecCCCchhHHHHHHHH
Q 005218 335 VKKTGLDDLEVALLLQ 350 (708)
Q Consensus 335 ktg~GI~~L~~~I~~~ 350 (708)
-||.|+++..+.|..+
T Consensus 164 ~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDL 179 (219)
T ss_pred ccCcCHHHHHHHHHHH
Confidence 9999998877776654
No 275
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.42 E-value=3.1e-13 Score=123.59 Aligned_cols=109 Identities=27% Similarity=0.327 Sum_probs=73.5
Q ss_pred EEEEEecCCCCchHHHHHhhcCccc----ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLV----AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~----~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+|+++|++|+|||||+++|.+.... .....+.+.......+.. ....+.|||++|++.+.......+..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceecccccchhhcCcEEEE
Confidence 6899999999999999999987776 122233333333333322 34458999999998887766666899999999
Q ss_pred EEEccCCCChhH-HHH---HHHhh--hcCCCEEEEEeCCC
Q 005218 267 VVAADDGVMPQT-LEA---IAHAN--AANVPIVVAINKCD 300 (708)
Q Consensus 267 VvDa~~g~~~q~-~~~---l~~l~--~~~~piIvViNK~D 300 (708)
|+|+++....+. .+. +..+. ..++|+++|+||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999997432222 111 22222 24699999999998
No 276
>PTZ00099 rab6; Provisional
Probab=99.41 E-value=1.2e-12 Score=129.10 Aligned_cols=134 Identities=12% Similarity=0.065 Sum_probs=89.5
Q ss_pred ccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHH----HHHHHhhhc
Q 005218 214 LVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTL----EAIAHANAA 288 (708)
Q Consensus 214 ~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~----~~l~~l~~~ 288 (708)
+...+.+++..++....+.++ ....+.||||||++.|..++..+++.||++|+|+|+++....+.. ..+......
T Consensus 5 F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~ 84 (176)
T PTZ00099 5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK 84 (176)
T ss_pred cCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 333455666666655545542 346889999999999999999999999999999999884332222 222222224
Q ss_pred CCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHHH
Q 005218 289 NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 289 ~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~ 353 (708)
+.|+++|+||+||........ .+.... ...+ ...++++||++|.|++++|++|...+..
T Consensus 85 ~~piilVgNK~DL~~~~~v~~-~e~~~~---~~~~--~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 85 DVIIALVGNKTDLGDLRKVTY-EEGMQK---AQEY--NTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCeEEEEEECcccccccCCCH-HHHHHH---HHHc--CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 678999999999964211111 111100 1111 2468999999999999999999987643
No 277
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.41 E-value=2.1e-12 Score=132.46 Aligned_cols=145 Identities=21% Similarity=0.244 Sum_probs=99.4
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcc--cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccE
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDI 263 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~--~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDi 263 (708)
...|..|+++|++|+|||||++.|.+... ......|+. ..... .+..++++||||+- ......+..+|+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-----~i~~~-~~~~i~~vDtPg~~---~~~l~~ak~aDv 106 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-----TVVTG-KKRRLTFIECPNDI---NAMIDIAKVADL 106 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-----EEEec-CCceEEEEeCCchH---HHHHHHHHhcCE
Confidence 45678899999999999999999986421 122233321 11222 67899999999964 222334688999
Q ss_pred EEEEEEccCCCChhHHHHHHHhhhcCCCE-EEEEeCCCCCCCCc--chhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 264 VVLVVAADDGVMPQTLEAIAHANAANVPI-VVAINKCDKPAADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 264 vllVvDa~~g~~~q~~~~l~~l~~~~~pi-IvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
+++|+|++.+...++...+..+...+.|. |+|+||+|+..... +.....+.... ...+..+.+++++||++.-.+
T Consensus 107 VllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~--~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 107 VLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRF--WTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHH--HHhhCCCCcEEEEeeccCCCC
Confidence 99999999999888888888888888995 55999999964221 12222332211 112223569999999998555
Q ss_pred h
Q 005218 341 D 341 (708)
Q Consensus 341 ~ 341 (708)
.
T Consensus 185 ~ 185 (225)
T cd01882 185 P 185 (225)
T ss_pred C
Confidence 3
No 278
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=5.2e-13 Score=136.33 Aligned_cols=164 Identities=23% Similarity=0.315 Sum_probs=112.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcch-------hhhhhhccc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGA 258 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~-------f~~~~~~~~ 258 (708)
..+.+|.|+|.+|+|||||+|+|.+.+... +..+..|+........+ ++..++||||||.++ +......++
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 356788899999999999999999777655 33333333222223333 778999999999765 445555678
Q ss_pred ccccEEEEEEEccCCCChhHHHHHHHhhh--cCCCEEEEEeCCCCCCC----C-----c-chhhhhhhhcccch-hccCC
Q 005218 259 AVTDIVVLVVAADDGVMPQTLEAIAHANA--ANVPIVVAINKCDKPAA----D-----P-ERVKNQLGAEGLEL-EDWGG 325 (708)
Q Consensus 259 ~~aDivllVvDa~~g~~~q~~~~l~~l~~--~~~piIvViNK~Dl~~~----~-----~-~~~~~~l~~~~~~~-~~~~~ 325 (708)
...|++++++|+.+....-+.+.++.+.. .+.|+++++|.+|.... + + ...++.+.+..-.. ..+..
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~ 195 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE 195 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999766666666665543 35789999999998532 1 1 11122221111111 11122
Q ss_pred cceEEEEeeecCCCchhHHHHHHHHH
Q 005218 326 KVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 326 ~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
..|++.+|+..++|++.|..++....
T Consensus 196 V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 196 VKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred cCCeEEeccccCccHHHHHHHHHHhC
Confidence 35899999999999999999988753
No 279
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.37 E-value=4.2e-12 Score=136.30 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=61.2
Q ss_pred EEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEe---------------------c--CCeeEEEeeCCCc-
Q 005218 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGM---------------------S--TGASITFLDTPGH- 247 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~---------------------~--~g~~v~liDTpG~- 247 (708)
|+|+|.||+|||||+|+|++....+...|++|++........ + ...++.||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999998877777788887754433221 0 2367999999997
Q ss_pred ---chhhhhhh---cccccccEEEEEEEccC
Q 005218 248 ---AAFSAMRK---RGAAVTDIVVLVVAADD 272 (708)
Q Consensus 248 ---~~f~~~~~---~~~~~aDivllVvDa~~ 272 (708)
..+..+.. ..++.||++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 33333333 35899999999999973
No 280
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.35 E-value=4.4e-12 Score=132.93 Aligned_cols=160 Identities=24% Similarity=0.214 Sum_probs=109.5
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcch-------hhhhhhccccccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAAVTD 262 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~-------f~~~~~~~~~~aD 262 (708)
--|.++|-||+|||||++++...+..+.+.|.||....-..+....+..+++-|.||.-+ ......+.+..|-
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 358999999999999999999999999999999988766666655777899999999432 1122334567899
Q ss_pred EEEEEEEccCCCC---hhHHHH-HHHhh-----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEe
Q 005218 263 IVVLVVAADDGVM---PQTLEA-IAHAN-----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 263 ivllVvDa~~g~~---~q~~~~-l~~l~-----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vS 333 (708)
++++|+|.+.... .++... ...+. ..++|.+||+||+|++.. .+.. +.+... +.........+++|
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~-~~~~~~---l~~~~~~~~~~~IS 314 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEEL-EELKKA---LAEALGWEVFYLIS 314 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHH-HHHHHH---HHHhcCCCcceeee
Confidence 9999999985221 222222 22222 247899999999997532 1222 221111 11111122233399
Q ss_pred eecCCCchhHHHHHHHHHHHc
Q 005218 334 AVKKTGLDDLEVALLLQAEMM 354 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~~~~~ 354 (708)
|.+++|+++|+..+.+.....
T Consensus 315 a~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 315 ALTREGLDELLRALAELLEET 335 (369)
T ss_pred hhcccCHHHHHHHHHHHHHHh
Confidence 999999999999988776544
No 281
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.4e-12 Score=122.39 Aligned_cols=162 Identities=19% Similarity=0.212 Sum_probs=110.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc-c--cc--ccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhccccccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-V--AK--EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTD 262 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~-~--~~--~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aD 262 (708)
....|.|+|.-|+|||||+.++-.... + .- ..-.+|.......+.. .+.++.|||..|++....++..++..|+
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe~lrSlw~~yY~~~H 94 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQESLRSLWKKYYWLAH 94 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChHHHHHHHHHHHHHhc
Confidence 346799999999999999999854322 1 10 1112333344445555 5889999999999999999999999999
Q ss_pred EEEEEEEccCC-CChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeec
Q 005218 263 IVVLVVAADDG-VMPQTL----EAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 263 ivllVvDa~~g-~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
+++++||+++. ..+... .....-...++|+++.+||.|+.+.-. .++...+..... .-..+.++.||||++
T Consensus 95 ~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~---~~~rd~~~~pvSal~ 171 (197)
T KOG0076|consen 95 GIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAEL---IPRRDNPFQPVSALT 171 (197)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhh---cCCccCccccchhhh
Confidence 99999999983 222222 222233346899999999999965321 111111111000 112356899999999
Q ss_pred CCCchhHHHHHHHHHHH
Q 005218 337 KTGLDDLEVALLLQAEM 353 (708)
Q Consensus 337 g~GI~~L~~~I~~~~~~ 353 (708)
|+|+++-.+|+....+.
T Consensus 172 gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 172 GEGVKEGIEWLVKKLEK 188 (197)
T ss_pred cccHHHHHHHHHHHHhh
Confidence 99999999999886543
No 282
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=3.2e-12 Score=144.25 Aligned_cols=113 Identities=30% Similarity=0.429 Sum_probs=97.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccccc----------------ccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAK----------------EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~----------------~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~ 251 (708)
...+++++.|++||||||.+.|+..+..++ ..+|+|.......... +++.++|||+|||-+|.
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPGHVDFS 86 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCCccchh
Confidence 346899999999999999999976554332 2357787766655544 88999999999999999
Q ss_pred hhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCC
Q 005218 252 AMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDK 301 (708)
Q Consensus 252 ~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl 301 (708)
.....+.+-+|++++++|+..|+..||...++++-..+...++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 99999999999999999999999999999999888888999999999994
No 283
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.1e-12 Score=134.08 Aligned_cols=208 Identities=21% Similarity=0.271 Sum_probs=145.1
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCc---ccccccCceEEeeeEEEEEec-------------------------------
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGMS------------------------------- 234 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~---~~~~~~~gtT~di~~~~v~~~------------------------------- 234 (708)
.++|.-+||+.|||||++.++.+-. |...-.+.+|...++....+-
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 4789999999999999999985532 111222333433322211100
Q ss_pred C-----CeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccC-CCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcc
Q 005218 235 T-----GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD-GVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPE 307 (708)
Q Consensus 235 ~-----g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~-g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~ 307 (708)
. -..+.|+|+|||+-....+..+....|.++|++.+++ ..++|+-+++....-+... ++++-||+||...+.
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~- 196 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQ- 196 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHH-
Confidence 0 1368899999999887777788888999999998876 4688999998776655544 899999999975321
Q ss_pred hhhhhhhhc-ccchhccCCcceEEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEee--------CCCC
Q 005218 308 RVKNQLGAE-GLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLD--------KGRG 378 (708)
Q Consensus 308 ~~~~~l~~~-~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~--------~~~G 378 (708)
..++..+. .+.........|++|+||.-+.|++-+.++|..... .+..+...|+...|+.+|-. .-+|
T Consensus 197 -A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP--vPvRdf~s~prlIVIRSFDVNkPG~ev~~lkG 273 (466)
T KOG0466|consen 197 -ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP--VPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKG 273 (466)
T ss_pred -HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC--CCccccCCCCcEEEEEeeccCCCCchhhcccC
Confidence 11111111 111111123569999999999999999999998643 33445667888888888753 3367
Q ss_pred cEEEEEEEeeEEcCCCEEEEcc
Q 005218 379 PLTTAIVKAGTLVCGQHVVVGH 400 (708)
Q Consensus 379 ~v~~~~V~~G~L~~gd~v~~g~ 400 (708)
-++.|.+..|.|+.|+.+.+-|
T Consensus 274 gvaggsil~Gvlkvg~~IEiRP 295 (466)
T KOG0466|consen 274 GVAGGSILKGVLKVGQEIEIRP 295 (466)
T ss_pred ccccchhhhhhhhcCcEEEecC
Confidence 7888999999999999998865
No 284
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.6e-11 Score=132.48 Aligned_cols=115 Identities=33% Similarity=0.451 Sum_probs=93.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc----------------cccCceEEeeeEEEEEec---------------CC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA----------------KEAGGITQHMGAFVVGMS---------------TG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~----------------~~~~gtT~di~~~~v~~~---------------~g 236 (708)
+-.++.++.|++||||||.+.|......+ ...+|+|....+..+.+. ++
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 45678999999999999999996543222 223577765444433221 46
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~ 302 (708)
.-++|||.|||-+|+......++.+|.+++|+|.-+|+.-|+...++++....+.-++++||+|..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 789999999999999999999999999999999999999999999999888888888999999973
No 285
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=2.7e-11 Score=111.22 Aligned_cols=155 Identities=18% Similarity=0.203 Sum_probs=110.5
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
..+|+.+|-.++||||++..|.-.... +..|++. +....+.+ .+..+++||..|+......+.+|+..+.++|||+
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVty-kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~ 92 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 92 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEe-eeeEEeeeeccCchhhhHHHHhhccCCceEEEEE
Confidence 568999999999999999999754332 2233333 33444555 7899999999999999999999999999999999
Q ss_pred EccCC-CChhHHHHHHHhh----hcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 269 AADDG-VMPQTLEAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 269 Da~~g-~~~q~~~~l~~l~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+.+. ..+..++.+..+. -.+.|++|..||-|++++- +.++...+.-.... +...-+.++||.+|+|+.+
T Consensus 93 Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r----~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 93 DSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIR----DRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred eccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccccc----CCccEeeccccccchhHHH
Confidence 98763 2233333333332 2367899999999998653 33444333222111 2234678999999999999
Q ss_pred HHHHHHHHH
Q 005218 343 LEVALLLQA 351 (708)
Q Consensus 343 L~~~I~~~~ 351 (708)
=+.+|....
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 998887643
No 286
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=1.4e-12 Score=124.11 Aligned_cols=208 Identities=15% Similarity=0.087 Sum_probs=135.8
Q ss_pred CCCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhccccccc
Q 005218 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTD 262 (708)
Q Consensus 184 ~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aD 262 (708)
+...+.++++|+|..++||||++.+++..-+...+...+..|+....+... ....+.+|||+|+++|......+++.|.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 345577899999999999999999999888877777777777665554432 4567889999999999999999999999
Q ss_pred EEEEEEEccCCCChhH-HHHHHHhh--hcCCCEEEEEeCCCCCCCCcch--hhhhhhhcccchhccCCcceEEEEeeecC
Q 005218 263 IVVLVVAADDGVMPQT-LEAIAHAN--AANVPIVVAINKCDKPAADPER--VKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 263 ivllVvDa~~g~~~q~-~~~l~~l~--~~~~piIvViNK~Dl~~~~~~~--~~~~l~~~~~~~~~~~~~~~vi~vSAktg 337 (708)
..+||++.+|....+. .+..+... ...+|.++|-||+|+.+...-. ..+.+... ....++.+|++..
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~--------l~~RlyRtSvked 166 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKK--------LHKRLYRTSVKED 166 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHH--------hhhhhhhhhhhhh
Confidence 9999999988544332 22222222 3579999999999997532111 01111110 1235788999999
Q ss_pred CCchhHHHHHHHHHHHcccc-cccCCCcce-eEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcccc
Q 005218 338 TGLDDLEVALLLQAEMMNLK-ARVDGPAQA-YVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW 402 (708)
Q Consensus 338 ~GI~~L~~~I~~~~~~~~~~-~~~~~p~~~-~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~ 402 (708)
.|+...|..|.+........ .+.+...+. .....+ . ..++. +..-..++..+++++.+.|..
T Consensus 167 ~NV~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn~~~-s-tsp~s-~t~~~~~t~~~~~ti~lrPak 230 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQQKKQSLNANERKQSSSSNSTY-S-TSPPS-TTVEAWVTPVPTATITLRPAK 230 (246)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhchhhccccCCCCc-c-CCCCc-ceeeeeeeecCCceeeechhh
Confidence 99999998887643221111 110000000 000001 1 11222 333456788888888887754
No 287
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.26 E-value=1.2e-11 Score=113.55 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=112.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
++.+++.++|-.|+||||++..|.+.+..- .+ |..+....+...+..++++||..|++.....|..|+.+.|.+|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEE
Confidence 567899999999999999999998776542 22 3334445555535599999999999999999999999999999
Q ss_pred EEEEccCCC-ChhHH----HHHHHhhhcCCCEEEEEeCCCCCCC-CcchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 266 LVVAADDGV-MPQTL----EAIAHANAANVPIVVAINKCDKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 266 lVvDa~~g~-~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
+|+|.+|.- .++.- +++...+...+|+.+..||.|+..+ ..++....+...++... .+.+-++||++++|
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdR----swhIq~csals~eg 166 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDR----SWHIQECSALSLEG 166 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhc----eEEeeeCccccccC
Confidence 999987732 22222 2222233457899999999999643 22333333333333333 24788999999999
Q ss_pred chhHHHHHHH
Q 005218 340 LDDLEVALLL 349 (708)
Q Consensus 340 I~~L~~~I~~ 349 (708)
+.+-.+++..
T Consensus 167 ~~dg~~wv~s 176 (185)
T KOG0074|consen 167 STDGSDWVQS 176 (185)
T ss_pred ccCcchhhhc
Confidence 9998888765
No 288
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.24 E-value=5.5e-11 Score=131.38 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=61.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEe--------------------c---CCeeEEEeeCCC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGM--------------------S---TGASITFLDTPG 246 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~--------------------~---~g~~v~liDTpG 246 (708)
.+|+|+|.||+|||||+|+|++.+......+++|++........ . ...++.|+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999998887777788887765543321 0 125689999999
Q ss_pred cch----hhhhh---hcccccccEEEEEEEcc
Q 005218 247 HAA----FSAMR---KRGAAVTDIVVLVVAAD 271 (708)
Q Consensus 247 ~~~----f~~~~---~~~~~~aDivllVvDa~ 271 (708)
... ...+. ...++.||++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 532 22222 23478999999999996
No 289
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.24 E-value=1.3e-11 Score=121.37 Aligned_cols=114 Identities=23% Similarity=0.323 Sum_probs=67.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEE--EecCCeeEEEeeCCCcchhhhhhhc---cccccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVV--GMSTGASITFLDTPGHAAFSAMRKR---GAAVTD 262 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v--~~~~g~~v~liDTpG~~~f~~~~~~---~~~~aD 262 (708)
+.+.|.|+|++|+|||+|+..|.......+ .|--...... ....+..+.++|+|||......... +...+-
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T----~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k 77 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPT----VTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK 77 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B-------SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCe----eccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence 457899999999999999999998744321 1111011111 1125678999999999988765444 378899
Q ss_pred EEEEEEEccCCCChhHHHHHHHh---------hhcCCCEEEEEeCCCCCCCCc
Q 005218 263 IVVLVVAADDGVMPQTLEAIAHA---------NAANVPIVVAINKCDKPAADP 306 (708)
Q Consensus 263 ivllVvDa~~g~~~q~~~~l~~l---------~~~~~piIvViNK~Dl~~~~~ 306 (708)
++|||+|++. ...+..+...++ ....+|++|++||.|+..+.+
T Consensus 78 ~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 78 GIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 9999999974 111222222211 135778999999999976544
No 290
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.24 E-value=6.8e-11 Score=124.93 Aligned_cols=112 Identities=20% Similarity=0.322 Sum_probs=80.1
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccc----------cCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhh-----
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKE----------AGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSA----- 252 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~----------~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~----- 252 (708)
++|+++|++|+|||||+|+|++..+.... .++++.+.....+.. +| ..+++|||||..++..
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999988765431 223333444444444 45 5799999999543211
Q ss_pred ---------------------hhhccc--ccccEEEEEEEccC-CCChhHHHHHHHhhhcCCCEEEEEeCCCCCC
Q 005218 253 ---------------------MRKRGA--AVTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 253 ---------------------~~~~~~--~~aDivllVvDa~~-g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~ 303 (708)
.+...+ ..+|+++++++++. ++.+.+.+.++.+.. ++|+|+|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCC
Confidence 011122 25789999998874 677777888888875 799999999999964
No 291
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=99.22 E-value=7.3e-11 Score=99.89 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=64.7
Q ss_pred eeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEc
Q 005218 594 VAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIR 673 (708)
Q Consensus 594 ~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~ 673 (708)
..|+..|++.|.+.++ + .|.| +|..|.+++|+++ +|..+ |+|.||++++++|+++.+|+||+|+|+
T Consensus 3 ~p~ki~Ilp~~vFr~~------~-~IvG-~V~~G~ik~G~~l----~G~~i--G~I~sIe~~~k~v~~A~~G~eVai~Ie 68 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQS------D-AIVG-EVLEGIIKPGYPL----DGRKI--GRIKSIEDNGKNVDEAKKGDEVAISIE 68 (81)
T ss_dssp -SEEEEEEEEEEECTC------C-EEEE-EEEEEEEETT-EE----CSSCE--EEEEEEEETTEEESEEETT-EEEEEEE
T ss_pred CceEEEECCcCEEecC------C-eEEE-EEeeeEEeCCCcc----CCEEE--EEEEEeEECCcCccccCCCCEEEEEEe
Confidence 4578888987776654 3 8999 9999999999988 88875 999999999999999999999999999
Q ss_pred ccCCCCCCCEEEE
Q 005218 674 DWHDFQVGDIIQC 686 (708)
Q Consensus 674 ~~~~~~~gD~ie~ 686 (708)
+..++++||+++.
T Consensus 69 g~~~i~eGDiLyV 81 (81)
T PF14578_consen 69 GPTQIKEGDILYV 81 (81)
T ss_dssp T--TB-TT-EEEE
T ss_pred CCccCCCCCEEeC
Confidence 9999999999874
No 292
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.2e-11 Score=134.00 Aligned_cols=116 Identities=36% Similarity=0.493 Sum_probs=96.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccccc-----------------ccCceEEeeeEEEEEec----CCeeEEEeeCC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAK-----------------EAGGITQHMGAFVVGMS----TGASITFLDTP 245 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~-----------------~~~gtT~di~~~~v~~~----~g~~v~liDTp 245 (708)
.+-.+|+++||-.||||+|++.|..+..... ..+|.+......++... ..+-++++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 3557899999999999999999976543211 12466665544444332 34679999999
Q ss_pred CcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC
Q 005218 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 246 G~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~ 302 (708)
||-+|...+...++.+|++++|+|+.+|++-++..+++++...+.|+++|+||+|+.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 999999999999999999999999999999999999999999999999999999973
No 293
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=99.21 E-value=1e-10 Score=104.82 Aligned_cols=90 Identities=28% Similarity=0.374 Sum_probs=81.2
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccc----eEEEEecccC----------CcccccCCCCcEEEe--
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWG----RIRAIRDMVG----------KSTDKARPAMPVEIE-- 428 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~----kVr~i~~~~~----------~~v~~a~~g~~V~i~-- 428 (708)
.+.|+|+..+++.|++++.++++|+|++||+|++|..+| +||+|.+..+ +.++++.|+.++.|.
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 578999999999999999999999999999999999997 9999999988 489999976666665
Q ss_pred ccCCCCCCCCeEEEeCCHHHHHHhhhh
Q 005218 429 GLKGLPMAGDDIIVVDSEERARMLSSG 455 (708)
Q Consensus 429 gl~~~~~~Gd~~~~v~~~~~a~~~~~~ 455 (708)
||+++ .+|+.|+++.++++++.+++.
T Consensus 82 gL~~v-~aG~~~~vv~~e~~a~~~~~~ 107 (110)
T cd03703 82 DLEKA-IAGSPLLVVGPEDEIEELKEE 107 (110)
T ss_pred CCccc-cCCCEEEEECCHHHHHHHHHH
Confidence 69998 999999999999999888763
No 294
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=6e-11 Score=116.78 Aligned_cols=158 Identities=22% Similarity=0.251 Sum_probs=101.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccc---cccEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAA---VTDIV 264 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~---~aDiv 264 (708)
.+..|.++|..|+|||+|+-.|.......+. +.+......+.+ +...++++|.|||.+.......++. .+-.+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~-gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRL-GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEee-cCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 3467999999999999999999877432111 112223333333 5556899999999988776666655 78999
Q ss_pred EEEEEccCCC--ChhHHHHH----HHh--hhcCCCEEEEEeCCCCCCCCcchhhhh-hhhc--------c----------
Q 005218 265 VLVVAADDGV--MPQTLEAI----AHA--NAANVPIVVAINKCDKPAADPERVKNQ-LGAE--------G---------- 317 (708)
Q Consensus 265 llVvDa~~g~--~~q~~~~l----~~l--~~~~~piIvViNK~Dl~~~~~~~~~~~-l~~~--------~---------- 317 (708)
+||+|+..-. ....-+.+ ... ....+|+++++||.|+..+.+.+..++ +... .
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 9999986411 11111221 112 245678999999999977655443322 2110 0
Q ss_pred ------------cchhccC-CcceEEEEeeecCCCchhHHHHHHHH
Q 005218 318 ------------LELEDWG-GKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 318 ------------~~~~~~~-~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
+.+.... ..+.+.+.|+++| +++++.+||.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0011111 3467899999999 899999998763
No 295
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.17 E-value=3.7e-11 Score=121.94 Aligned_cols=168 Identities=25% Similarity=0.386 Sum_probs=106.2
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcCccc-------------c--------------------------cccCceEEe
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLV-------------A--------------------------KEAGGITQH 225 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~-------------~--------------------------~~~~gtT~d 225 (708)
...+++.|.++|-.|+||||++.+|..--.+ + .+.+|++..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 4668899999999999999999998431110 0 111233332
Q ss_pred eeEEEEEec----------CCeeEEEeeCCCcchhhhhhh------cc--cccccEEEEEEEccCCCChhH-----HHHH
Q 005218 226 MGAFVVGMS----------TGASITFLDTPGHAAFSAMRK------RG--AAVTDIVVLVVAADDGVMPQT-----LEAI 282 (708)
Q Consensus 226 i~~~~v~~~----------~g~~v~liDTpG~~~f~~~~~------~~--~~~aDivllVvDa~~g~~~q~-----~~~l 282 (708)
..-+...++ ......++||||+-+...... .. ....-++++|+|......+.+ +-..
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 221111110 234689999999643221111 11 134457889999876544443 2334
Q ss_pred HHhhhcCCCEEEEEeCCCCCCCC--------cchhhhhhhh------------cccchhccCCcceEEEEeeecCCCchh
Q 005218 283 AHANAANVPIVVAINKCDKPAAD--------PERVKNQLGA------------EGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 283 ~~l~~~~~piIvViNK~Dl~~~~--------~~~~~~~l~~------------~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
..+.+...|+|+|.||+|+.+.. .+.+++.+.+ +.+.++.|......+.+||.||.|.++
T Consensus 175 Silyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 175 SILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD 254 (366)
T ss_pred HHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence 55667899999999999997642 2333333332 223445666678899999999999999
Q ss_pred HHHHHHHHHH
Q 005218 343 LEVALLLQAE 352 (708)
Q Consensus 343 L~~~I~~~~~ 352 (708)
++.++...++
T Consensus 255 f~~av~~~vd 264 (366)
T KOG1532|consen 255 FFTAVDESVD 264 (366)
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 296
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.15 E-value=3.5e-10 Score=117.62 Aligned_cols=118 Identities=18% Similarity=0.155 Sum_probs=83.1
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh--h--------
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA--M-------- 253 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~--~-------- 253 (708)
....+++|+++|++|+|||||+|+|++..... +...+.|.......... ++..+++|||||..+... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 45567899999999999999999999987643 45556677766666555 789999999999765421 0
Q ss_pred hhccc--ccccEEEEEEEccC-CCChhHHHHHHHhhh-cC----CCEEEEEeCCCCCC
Q 005218 254 RKRGA--AVTDIVVLVVAADD-GVMPQTLEAIAHANA-AN----VPIVVAINKCDKPA 303 (708)
Q Consensus 254 ~~~~~--~~aDivllVvDa~~-g~~~q~~~~l~~l~~-~~----~piIvViNK~Dl~~ 303 (708)
..+++ ...|++++|...+. .....+...++.+.. .+ .++++|+||+|...
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 11222 25788888876653 334455555555543 22 46999999999853
No 297
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.15 E-value=5.4e-11 Score=107.51 Aligned_cols=137 Identities=26% Similarity=0.297 Sum_probs=94.1
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCC----cchhhhhhhcccccccEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPG----HAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG----~~~f~~~~~~~~~~aDivl 265 (708)
.+++++|.+++|||||+++|.+...... -|+.+. +.- . -.||||| |+.+-.........+|+++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk----KTQAve---~~d-~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK----KTQAVE---FND-K----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc----ccceee---ccC-c----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 3799999999999999999998765421 133221 111 1 2489999 2222222233457899999
Q ss_pred EEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC-CCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 266 LVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP-AADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~-~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
+|-.++++.+.-. -.++.-...|+|-+++|.||. +.+.+...+.+.+.| .-++|.+|+....|+++|+
T Consensus 70 ~v~~and~~s~f~---p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG--------a~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 70 YVHAANDPESRFP---PGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAG--------AEPIFETSAVDNQGVEELV 138 (148)
T ss_pred eeecccCccccCC---cccccccccceEEEEecccccchHhHHHHHHHHHHcC--------CcceEEEeccCcccHHHHH
Confidence 9999988543211 122233456799999999997 455555566666554 3489999999999999999
Q ss_pred HHHHH
Q 005218 345 VALLL 349 (708)
Q Consensus 345 ~~I~~ 349 (708)
+.|..
T Consensus 139 ~~L~~ 143 (148)
T COG4917 139 DYLAS 143 (148)
T ss_pred HHHHh
Confidence 98865
No 298
>PTZ00258 GTP-binding protein; Provisional
Probab=99.13 E-value=4.1e-10 Score=123.44 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=67.7
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC----------------CeeEEEeeCCCcch
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST----------------GASITFLDTPGHAA 249 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~----------------g~~v~liDTpG~~~ 249 (708)
..++.+|+|+|.||+|||||+|+|++....+...|++|++.....+.+++ ..++.|+||||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 35678999999999999999999999888788889999987777766532 23599999999542
Q ss_pred -------hhhhhhcccccccEEEEEEEcc
Q 005218 250 -------FSAMRKRGAAVTDIVVLVVAAD 271 (708)
Q Consensus 250 -------f~~~~~~~~~~aDivllVvDa~ 271 (708)
........++.+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112224568899999999984
No 299
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.1e-10 Score=107.62 Aligned_cols=158 Identities=24% Similarity=0.202 Sum_probs=107.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
+..++.++|-.|+||||++-+|--.++.. ..|++. +....+.+ ++.++.+||..|+......|..|+.+.|.+|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtig--fnve~v~y-KNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIG--FNVETVPY-KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCC--cCcccccc-ccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 44689999999999999998876544432 223332 33334455 788999999999999999999999999999999
Q ss_pred EEccCC--CChhHHHHHHHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDG--VMPQTLEAIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g--~~~q~~~~l~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|.++. +...-.+....+. ..+..++++.||+|...+-. ..+.+...++..- ....+.+|..||.+|+|++.
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t--~~E~~~~L~l~~L-k~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALT--RSEVLKMLGLQKL-KDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhh--HHHHHHHhChHHH-hhheeEEEeeccccccCCcH
Confidence 999872 2222223333332 23456899999999864321 1111111111110 01236899999999999999
Q ss_pred HHHHHHHHHH
Q 005218 343 LEVALLLQAE 352 (708)
Q Consensus 343 L~~~I~~~~~ 352 (708)
.++||.+...
T Consensus 170 ~~DWL~~~l~ 179 (182)
T KOG0072|consen 170 AMDWLQRPLK 179 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987543
No 300
>PRK13768 GTPase; Provisional
Probab=99.10 E-value=2.1e-10 Score=119.72 Aligned_cols=115 Identities=25% Similarity=0.315 Sum_probs=75.2
Q ss_pred eeEEEeeCCCcchhhh---hhh---ccccc--ccEEEEEEEccCCCChhHHHHHHHhh-----hcCCCEEEEEeCCCCCC
Q 005218 237 ASITFLDTPGHAAFSA---MRK---RGAAV--TDIVVLVVAADDGVMPQTLEAIAHAN-----AANVPIVVAINKCDKPA 303 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~---~~~---~~~~~--aDivllVvDa~~g~~~q~~~~l~~l~-----~~~~piIvViNK~Dl~~ 303 (708)
..+.+|||||+.+... ... +.+.. ++++++|+|+..+..+.+......+. ..++|+++|+||+|+.+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 3699999999766432 221 12222 89999999998877666655444332 56899999999999975
Q ss_pred CCc-chhhhhhhh-------cc--------------cchhccCCcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 304 ADP-ERVKNQLGA-------EG--------------LELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 304 ~~~-~~~~~~l~~-------~~--------------~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
.+. +.....+.. .. ..+...+...+++++||+++.|+++|+++|....
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 432 112221211 00 0112223345899999999999999999998753
No 301
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.10 E-value=3.7e-10 Score=121.62 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=68.5
Q ss_pred CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhh
Q 005218 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQL 313 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l 313 (708)
.|+.+.|+||+|....... ....||++++|.+...|..-|. +.. ......-++|+||+|+..... ......+
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~---~k~-gi~E~aDIiVVNKaDl~~~~~a~~~~~el 219 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQG---IKK-GIMELADLIVINKADGDNKTAARRAAAEY 219 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHH---HHh-hhhhhhheEEeehhcccchhHHHHHHHHH
Confidence 4688999999997743322 3568999999986433322222 111 011233489999999964321 1222222
Q ss_pred hhcccchh-c-cCCcceEEEEeeecCCCchhHHHHHHHHHHH
Q 005218 314 GAEGLELE-D-WGGKVQVVEVSAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 314 ~~~~~~~~-~-~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~ 353 (708)
........ . ..+..|++++||++|.|+++|++.|....+.
T Consensus 220 ~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 220 RSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred HHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 21111101 0 1123689999999999999999999987653
No 302
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.09 E-value=5.3e-10 Score=120.77 Aligned_cols=139 Identities=18% Similarity=0.304 Sum_probs=93.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcC----ccc------------ccccCc---eEEeeeE---EEEEecCC----eeEEEee
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQT----SLV------------AKEAGG---ITQHMGA---FVVGMSTG----ASITFLD 243 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~----~~~------------~~~~~g---tT~di~~---~~v~~~~g----~~v~liD 243 (708)
+.|+++|+.|+|||||+|+|.+. +.. .++.+| +|.+... ..+.+.-. .++.|+|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 57999999999999999999887 444 245577 7777554 33333322 7899999
Q ss_pred CCCcchhhh---h--------------------------hhcccc-cccEEEEEE-Ecc------CCCChhHHHHHHHhh
Q 005218 244 TPGHAAFSA---M--------------------------RKRGAA-VTDIVVLVV-AAD------DGVMPQTLEAIAHAN 286 (708)
Q Consensus 244 TpG~~~f~~---~--------------------------~~~~~~-~aDivllVv-Da~------~g~~~q~~~~l~~l~ 286 (708)
|+|...-+. + +...+. ++|+.|+|. |.+ ++..+...+.+..++
T Consensus 98 cvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk 177 (492)
T TIGR02836 98 CVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELK 177 (492)
T ss_pred CCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHH
Confidence 999432110 0 112244 899999999 775 345566777888899
Q ss_pred hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeec
Q 005218 287 AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 287 ~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
..++|+|+++||.|-...........+. +.+ ++|++++||..
T Consensus 178 ~~~kPfiivlN~~dp~~~et~~l~~~l~------eky--~vpvl~v~c~~ 219 (492)
T TIGR02836 178 ELNKPFIILLNSTHPYHPETEALRQELE------EKY--DVPVLAMDVES 219 (492)
T ss_pred hcCCCEEEEEECcCCCCchhHHHHHHHH------HHh--CCceEEEEHHH
Confidence 9999999999999942212222222322 122 26888888854
No 303
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=3.7e-10 Score=106.83 Aligned_cols=159 Identities=25% Similarity=0.265 Sum_probs=109.5
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
..+.-+++++|-.|+|||||++.|-.++....- .|.+.....+.+ .|.+++-+|..||..-...+..++..+|.++
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~I-g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELSI-GGMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHhee-cCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 456778999999999999999999877665321 244445555666 8999999999999999999999999999999
Q ss_pred EEEEccCC-CChhHHHHHHHhh----hcCCCEEEEEeCCCCCCCCcch-hhhhhhhc------cc-ch-hccCCcceEEE
Q 005218 266 LVVAADDG-VMPQTLEAIAHAN----AANVPIVVAINKCDKPAADPER-VKNQLGAE------GL-EL-EDWGGKVQVVE 331 (708)
Q Consensus 266 lVvDa~~g-~~~q~~~~l~~l~----~~~~piIvViNK~Dl~~~~~~~-~~~~l~~~------~~-~~-~~~~~~~~vi~ 331 (708)
+.+|+.|. ...+.++.+..+. -.++|+++.+||+|.+.+..+. ....+.-. +. .. ..-.....++.
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 99999873 2233344433322 2589999999999998654322 21111110 10 00 11122345788
Q ss_pred EeeecCCCchhHHHHHH
Q 005218 332 VSAVKKTGLDDLEVALL 348 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~ 348 (708)
||...+.|.-+-+.|+.
T Consensus 173 csi~~~~gy~e~fkwl~ 189 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLS 189 (193)
T ss_pred EEEEccCccceeeeehh
Confidence 99888888666666554
No 304
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.07 E-value=1.4e-09 Score=101.39 Aligned_cols=161 Identities=24% Similarity=0.247 Sum_probs=112.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCC--eeEEEeeCCCcchh-hhhhhcccccc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAF-SAMRKRGAAVT 261 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f-~~~~~~~~~~a 261 (708)
+.+..+|+++|.-++|||+++..|+..+... ++...|-.|+....++.+.| ..+.|.||+|.... ..+-..++.-+
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 3467899999999999999999998766554 55545555666666666544 46899999998887 44445678999
Q ss_pred cEEEEEEEccCCCChhHHHHHHHhh-----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeec
Q 005218 262 DIVVLVVAADDGVMPQTLEAIAHAN-----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~l~~l~-----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
|+.+||++..+.-+.+-.+.++.-. +..+|++++.||+|+.+ +.++.......-.. ...+..++++|..
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~--p~~vd~d~A~~Wa~----rEkvkl~eVta~d 159 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE--PREVDMDVAQIWAK----REKVKLWEVTAMD 159 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc--chhcCHHHHHHHHh----hhheeEEEEEecc
Confidence 9999999998855555555443221 24679999999999952 22222221111101 1235789999999
Q ss_pred CCCchhHHHHHHHHHH
Q 005218 337 KTGLDDLEVALLLQAE 352 (708)
Q Consensus 337 g~GI~~L~~~I~~~~~ 352 (708)
...+-+.|..+.....
T Consensus 160 R~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLH 175 (198)
T ss_pred chhhhhHHHHHHHhcc
Confidence 9988888888776543
No 305
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.1e-09 Score=105.78 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=115.6
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC-eeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG-ASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g-~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
..+++++|..+.||||+.++.+..++.-...+++........+..+.| .++..|||+|++.+...+..++-++.+++++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 568999999999999999999999998877777766655555444444 8899999999999999999898899999999
Q ss_pred EEccCCCCh----hHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 268 VAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 268 vDa~~g~~~----q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+|.+...+- .|.+.+...+ .++|+++++||.|...... ....+ .+ ....+..++++||+++.|.+.-
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~~--k~k~v-----~~-~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARKV--KAKPV-----SF-HRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceecccccc--ccccc-----ee-eecccceeEEeecccccccccc
Confidence 999864433 3333333332 4699999999999853220 00111 00 1123568999999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
|-++.+..
T Consensus 161 Fl~LarKl 168 (216)
T KOG0096|consen 161 FLWLARKL 168 (216)
T ss_pred hHHHhhhh
Confidence 99888753
No 306
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.06 E-value=1.5e-10 Score=128.28 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=109.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCccccc---ccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhccccccc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAK---EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTD 262 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~---~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aD 262 (708)
.++..+|+++|..|+|||||+-+|+.+++... ..+-+|.- ..+. ++..+..++||+...+........++.||
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advt-Pe~vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVT-PENVPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccC-cCcCceEEEecccccchhHHHHHHHhhcC
Confidence 45678999999999999999999999887542 22333332 1121 26678999999976665555667889999
Q ss_pred EEEEEEEccC-----CCChhHHHHHHHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeee
Q 005218 263 IVVLVVAADD-----GVMPQTLEAIAHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 263 ivllVvDa~~-----g~~~q~~~~l~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
++.+|++.++ +++..|+.+++... -.++|+|+|+||+|............+.- .+..|..--.+|+|||+
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~p---im~~f~EiEtciecSA~ 158 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLP---IMIAFAEIETCIECSAL 158 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHH---HHHHhHHHHHHHhhhhh
Confidence 9999998876 56667777777664 24789999999999965433311111110 01111112257999999
Q ss_pred cCCCchhHHHHHHH
Q 005218 336 KKTGLDDLEVALLL 349 (708)
Q Consensus 336 tg~GI~~L~~~I~~ 349 (708)
+-.++.+++..-.+
T Consensus 159 ~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 159 TLANVSELFYYAQK 172 (625)
T ss_pred hhhhhHhhhhhhhh
Confidence 99999999875443
No 307
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.06 E-value=5.1e-10 Score=104.53 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=116.7
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
..+|.++|++..|||||+-.+.+.............+.....+.+. ....+.+||..|+++|..+..-....+-+++++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 3689999999999999999999888765444334444444445441 335678999999999999999999999999999
Q ss_pred EEccCCCChhHH-HHHHHhhhcCCC--EEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 268 VAADDGVMPQTL-EAIAHANAANVP--IVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 268 vDa~~g~~~q~~-~~l~~l~~~~~p--iIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
+|.+...+-... +..++++..+.- -|+|++|.|+.-.-+.+.+..+..+...... .-+.+.+++|+.+..|+..+|
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk-~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAK-VMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHH-HhCCcEEEeeccccccHHHHH
Confidence 999875443333 334555554432 4789999998533333444433322221111 124588999999999999999
Q ss_pred HHHHHHHHHccccc
Q 005218 345 VALLLQAEMMNLKA 358 (708)
Q Consensus 345 ~~I~~~~~~~~~~~ 358 (708)
..+......+.+..
T Consensus 179 K~vlAklFnL~~ti 192 (205)
T KOG1673|consen 179 KIVLAKLFNLPWTI 192 (205)
T ss_pred HHHHHHHhCCceec
Confidence 98876654444433
No 308
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.05 E-value=3.4e-10 Score=117.48 Aligned_cols=147 Identities=27% Similarity=0.316 Sum_probs=108.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCc---------chhhhhhhcc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH---------AAFSAMRKRG 257 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~---------~~f~~~~~~~ 257 (708)
..-+.|+++|-+|+|||||+++|++......+.-.-|.|.......++.|..+.|.||-|. ..|.... ..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATL-ee 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATL-EE 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHH-HH
Confidence 3458999999999999999999997776666666677777777777779999999999993 2333222 34
Q ss_pred cccccEEEEEEEccCCCChhHHH-HHHHhhhcCCC-------EEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceE
Q 005218 258 AAVTDIVVLVVAADDGVMPQTLE-AIAHANAANVP-------IVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQV 329 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~~~q~~~-~l~~l~~~~~p-------iIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 329 (708)
...||+++.|+|.+++..++..+ .+.-+...++| +|=|-||+|......+. ++. -.
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~------------E~n----~~ 318 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------------EKN----LD 318 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc------------ccC----Cc
Confidence 67899999999999976554443 44555556664 56788999985322111 111 25
Q ss_pred EEEeeecCCCchhHHHHHHHH
Q 005218 330 VEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 330 i~vSAktg~GI~~L~~~I~~~ 350 (708)
+++||++|+|++++++.+...
T Consensus 319 v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 319 VGISALTGDGLEELLKAEETK 339 (410)
T ss_pred cccccccCccHHHHHHHHHHH
Confidence 899999999999999988764
No 309
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.04 E-value=6.6e-10 Score=113.54 Aligned_cols=160 Identities=28% Similarity=0.314 Sum_probs=112.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccc---ccccCceEEeeeEEEEEecCCeeEEEeeCCCc----------chhhhh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV---AKEAGGITQHMGAFVVGMSTGASITFLDTPGH----------AAFSAM 253 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~---~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~----------~~f~~~ 253 (708)
.+.+.++++|.+|+|||||+|.++..... ....+|-|+.+..+.+ |..+.++|.||. .++..+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v----~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV----GKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec----cceEEEEecCCcccccCCccCcchHhHh
Confidence 46699999999999999999999765542 2336788888877654 568999999992 234444
Q ss_pred hhccc---ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhh---hh-h-hcccchhccCC
Q 005218 254 RKRGA---AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKN---QL-G-AEGLELEDWGG 325 (708)
Q Consensus 254 ~~~~~---~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~---~l-~-~~~~~~~~~~~ 325 (708)
...|+ ++-=.+++.+|++-++.+-+...+.++.+.++|+.+|+||||....-...... .+ . -.++...-+..
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~ 289 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLV 289 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceec
Confidence 44443 23335778889999999999999999999999999999999985321100000 00 0 01111112223
Q ss_pred cceEEEEeeecCCCchhHHHHHHHH
Q 005218 326 KVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 326 ~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
..|++.+|+.|+.|++.|+-.|...
T Consensus 290 ~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 290 DLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cCCceeeecccccCceeeeeehhhh
Confidence 4678899999999999998766553
No 310
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.03 E-value=1.6e-09 Score=111.73 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=82.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceE--------------------------------------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGIT-------------------------------------------- 223 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT-------------------------------------------- 223 (708)
..|.++++|+.++||||++++|.+..+.....+.+|
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 446899999999999999999987653221111111
Q ss_pred -------EeeeEEEEEecCCeeEEEeeCCCcchh-------------hhhhhcccc-cccEEEEEEEccCCCChhH-HHH
Q 005218 224 -------QHMGAFVVGMSTGASITFLDTPGHAAF-------------SAMRKRGAA-VTDIVVLVVAADDGVMPQT-LEA 281 (708)
Q Consensus 224 -------~di~~~~v~~~~g~~v~liDTpG~~~f-------------~~~~~~~~~-~aDivllVvDa~~g~~~q~-~~~ 281 (708)
.+.....+..++...++|+||||.... ..+...+++ ..+++++|+|+..++..++ .+.
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 111122222223367999999997421 123445666 5569999999998887776 688
Q ss_pred HHHhhhcCCCEEEEEeCCCCCCCC
Q 005218 282 IAHANAANVPIVVAINKCDKPAAD 305 (708)
Q Consensus 282 l~~l~~~~~piIvViNK~Dl~~~~ 305 (708)
.+.+...+.|+++|+||+|.....
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCcc
Confidence 888888899999999999997543
No 311
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=99.03 E-value=4.4e-11 Score=108.14 Aligned_cols=57 Identities=16% Similarity=0.004 Sum_probs=39.9
Q ss_pred hhhhhhhcccccccccCCC-----cccccccCchhhhhccccc-------------CCccccCCCCcchhhhccCc
Q 005218 4 RQILKRSANARVVASKSLK-----YAPSSITTSAESSCSCLQG-------------LRYHDVSMKVSLIRCFHASP 61 (708)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------------~~~r~a~~geft~Raf~ngk 61 (708)
+.++..++| .....+|.. -+|+|||+++.+...|+++ .|+|+|+|||||+|||+|||
T Consensus 40 ~~~~~~~~~-~~~~~iDe~lv~~f~~P~SyTGEd~vEi~~HGg~~v~~~il~~l~~~G~R~A~pGEFT~RAflNGK 114 (114)
T PF10396_consen 40 RAYYGTIYD-EDGEPIDEVLVLYFPAPRSYTGEDVVEIHCHGGPAVVRRILEALLKAGARLAEPGEFTRRAFLNGK 114 (114)
T ss_dssp EEEEEEEEC-SSTCEEEEEEEEEEBTTCSSSSSEEEEEEEESSHHHHHHHHHHHHHTT-EE--TTHHHHHHHHTTS
T ss_pred EEEEEEEEc-CCCccccceeEEeecCCCcccCCCEEEEEcCCCHHHHHHHHHHHHHcCceEcCCchhhHHHHhcCC
Confidence 334444444 333344443 3799999999999999653 59999999999999999998
No 312
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.01 E-value=2.8e-09 Score=112.88 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=76.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhh---c----cc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRK---R----GA 258 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~---~----~~ 258 (708)
...++|+++|.+|+|||||+|+|++..... +...+.|.......... +|..+++|||||..+...... . ++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 356799999999999999999999887643 33333333333333334 789999999999765422111 1 11
Q ss_pred --ccccEEEEEEEccC-CCChhHHHHHHHhhh-----cCCCEEEEEeCCCCCC
Q 005218 259 --AVTDIVVLVVAADD-GVMPQTLEAIAHANA-----ANVPIVVAINKCDKPA 303 (708)
Q Consensus 259 --~~aDivllVvDa~~-g~~~q~~~~l~~l~~-----~~~piIvViNK~Dl~~ 303 (708)
...|++|||...+. .....+...++.+.. .-.+.||++|+.|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 26899999965442 244444445544432 1246999999999753
No 313
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.00 E-value=1.7e-09 Score=110.95 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=75.5
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh-----hhcccccccEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM-----RKRGAAVTDIV 264 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~-----~~~~~~~aDiv 264 (708)
+|++||+.++||||+.+.+.....+. +..-+.|.++....+...+...+.+||.||+..+... +...++.++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 68999999999999999988765443 4455778888777776547789999999999776544 34557999999
Q ss_pred EEEEEccCCCChhHHHHH----HHhh--hcCCCEEEEEeCCCCCC
Q 005218 265 VLVVAADDGVMPQTLEAI----AHAN--AANVPIVVAINKCDKPA 303 (708)
Q Consensus 265 llVvDa~~g~~~q~~~~l----~~l~--~~~~piIvViNK~Dl~~ 303 (708)
|+|+|+.......++..+ ..+. ..++.+-++++|+|+..
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 999999843334443333 2222 34677999999999964
No 314
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.99 E-value=1.3e-09 Score=105.85 Aligned_cols=63 Identities=21% Similarity=0.383 Sum_probs=46.1
Q ss_pred eeEEEeeCCCcchh----hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhh-hcCCCEEEEEeCC
Q 005218 237 ASITFLDTPGHAAF----SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHAN-AANVPIVVAINKC 299 (708)
Q Consensus 237 ~~v~liDTpG~~~f----~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~-~~~~piIvViNK~ 299 (708)
..+.|+||||.... ..+...++..+|++|+|++++........+.+.... .....+++|+||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 35899999996432 245567789999999999999877766666665544 3445599999984
No 315
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.97 E-value=1.2e-09 Score=118.94 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=106.8
Q ss_pred CCCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh-----h--hhhh-
Q 005218 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-----S--AMRK- 255 (708)
Q Consensus 184 ~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f-----~--~~~~- 255 (708)
.+.+..++++++|-||+|||||+|.+...+..+.+.+.||..+....+.+ .-..+.++||||+-+- . .|..
T Consensus 163 sIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 163 AIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhhhhHHHHHHH
Confidence 34567789999999999999999999999999989999998876666655 5568899999994321 1 1111
Q ss_pred ccc-ccccEEEEEEEccC--CCCh-hHHHHHHHhhh--cCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcce
Q 005218 256 RGA-AVTDIVVLVVAADD--GVMP-QTLEAIAHANA--ANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQ 328 (708)
Q Consensus 256 ~~~-~~aDivllVvDa~~--g~~~-q~~~~l~~l~~--~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 328 (708)
..+ .---+|||++|.+. |.+. +...+++.++. .++|+|+|+||+|+.... .++-.+.+.+.. .. .++++
T Consensus 242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~---~~-~~~v~ 317 (620)
T KOG1490|consen 242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTI---ID-DGNVK 317 (620)
T ss_pred HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHH---Hh-ccCce
Confidence 111 22346899999875 4432 22334444432 589999999999996432 222222222111 11 13478
Q ss_pred EEEEeeecCCCchhHHHHH
Q 005218 329 VVEVSAVKKTGLDDLEVAL 347 (708)
Q Consensus 329 vi~vSAktg~GI~~L~~~I 347 (708)
++.+|+.+.+|+-++...-
T Consensus 318 v~~tS~~~eegVm~Vrt~A 336 (620)
T KOG1490|consen 318 VVQTSCVQEEGVMDVRTTA 336 (620)
T ss_pred EEEecccchhceeeHHHHH
Confidence 9999999999997765443
No 316
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.93 E-value=4.7e-09 Score=112.42 Aligned_cols=111 Identities=22% Similarity=0.238 Sum_probs=66.4
Q ss_pred CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchh-hhhh
Q 005218 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV-KNQL 313 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~-~~~l 313 (708)
.++.+.|+||||...... ..+..+|.++++.+...+ ..+..+..- ..++|.++|+||+|+........ ...+
T Consensus 125 ~g~D~viidT~G~~~~e~---~i~~~aD~i~vv~~~~~~---~el~~~~~~-l~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 197 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSEV---DIANMADTFVVVTIPGTG---DDLQGIKAG-LMEIADIYVVNKADGEGATNVTIARLML 197 (300)
T ss_pred CCCCEEEEeCCCCchhhh---HHHHhhceEEEEecCCcc---HHHHHHHHH-HhhhccEEEEEcccccchhHHHHHHHHH
Confidence 478899999999643221 235678998888654322 222222211 24688899999999975432111 1111
Q ss_pred hh-cccchhc-cCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 314 GA-EGLELED-WGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 314 ~~-~~~~~~~-~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
.. ....... .....+++++||++|.|+++|+++|.....
T Consensus 198 ~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 198 ALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 0000011 011247999999999999999999987644
No 317
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.92 E-value=4.7e-09 Score=106.29 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=85.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc---c--cc-cccCceEEee------eEEEEEec---------------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS---L--VA-KEAGGITQHM------GAFVVGMS--------------------- 234 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~---~--~~-~~~~gtT~di------~~~~v~~~--------------------- 234 (708)
.+++|+++|++|+|||||+++++... . .. ....+.+.|. ....+.+.
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 46889999999999999999996531 0 10 0000001110 00001110
Q ss_pred CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcc---hhhh
Q 005218 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE---RVKN 311 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~---~~~~ 311 (708)
.+..+.|++|.|.-.. ........+..+.|+|+.++..... ......+.|.++++||+|+.+.... ...+
T Consensus 101 ~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~ 173 (207)
T TIGR00073 101 DDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEAVGFDVEKMKA 173 (207)
T ss_pred CCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccccchhhHHHHHH
Confidence 1346788888882110 0111123455677888876432211 1122245788999999999753211 2222
Q ss_pred hhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHH
Q 005218 312 QLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 312 ~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
.+.. .....|++++||++|.|++++++++...
T Consensus 174 ~l~~-------~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 174 DAKK-------INPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHH-------hCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 2221 1234689999999999999999999764
No 318
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.88 E-value=2.4e-09 Score=110.67 Aligned_cols=114 Identities=19% Similarity=0.236 Sum_probs=60.9
Q ss_pred eEEEeeCCCcchhhhhhhcc------c--ccccEEEEEEEccCCCChhHHHH-----HHHhhhcCCCEEEEEeCCCCCCC
Q 005218 238 SITFLDTPGHAAFSAMRKRG------A--AVTDIVVLVVAADDGVMPQTLEA-----IAHANAANVPIVVAINKCDKPAA 304 (708)
Q Consensus 238 ~v~liDTpG~~~f~~~~~~~------~--~~aDivllVvDa~~g~~~q~~~~-----l~~l~~~~~piIvViNK~Dl~~~ 304 (708)
.+.++|||||.++...+... + ...=++++++|+..-..+...-. +....+.+.|.|.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 69999999988765544422 2 34557899999986444333211 12223468999999999999752
Q ss_pred Ccchhhhh-----------------h-hhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 305 DPERVKNQ-----------------L-GAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 305 ~~~~~~~~-----------------l-~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
..+...+. + ......++.++...+++++|+.+++|+++|+..|.+..
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 21111110 0 01111223343334899999999999999999987754
No 319
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.85 E-value=8.1e-09 Score=103.97 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=61.7
Q ss_pred CeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCE--EEEEeCCCCCCC---Ccchhh
Q 005218 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPI--VVAINKCDKPAA---DPERVK 310 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~pi--IvViNK~Dl~~~---~~~~~~ 310 (708)
+....+++|.|..-..... -..+|.++.|+|+.++...+.. . ..++.. ++++||+|+.+. +.+.+.
T Consensus 91 ~~D~iiIEt~G~~l~~~~~---~~l~~~~i~vvD~~~~~~~~~~-~-----~~qi~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS---PELADLTIFVIDVAAGDKIPRK-G-----GPGITRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CCCEEEEECCCCCcccccc---hhhhCcEEEEEEcchhhhhhhh-h-----HhHhhhccEEEEEhhhccccccccHHHHH
Confidence 3567788888832111111 1236889999999875432111 0 112333 899999999742 122222
Q ss_pred hhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHH
Q 005218 311 NQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 311 ~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
+.+.. +....+++++||++|+|+++++++|.+.
T Consensus 162 ~~~~~-------~~~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 162 RDAKK-------MRGEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred HHHHH-------hCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 23322 1234789999999999999999999864
No 320
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.81 E-value=5.7e-09 Score=109.70 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=63.1
Q ss_pred EEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC----------------eeEEEeeCCCcchh-----
Q 005218 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG----------------ASITFLDTPGHAAF----- 250 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g----------------~~v~liDTpG~~~f----- 250 (708)
|+|+|.||+|||||+|+|++.+......|++|++.....+.+.+. ..+.|+||||...-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999999887788899999877766666332 25999999995421
Q ss_pred --hhhhhcccccccEEEEEEEccC
Q 005218 251 --SAMRKRGAAVTDIVVLVVAADD 272 (708)
Q Consensus 251 --~~~~~~~~~~aDivllVvDa~~ 272 (708)
.......++.+|++++|+|+..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcC
Confidence 1122234688999999999853
No 321
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.81 E-value=7.4e-09 Score=112.45 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=86.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc-----cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh-----hhhcc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-----VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA-----MRKRG 257 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~-----~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~-----~~~~~ 257 (708)
-+.+|+|+|.+|+|||||+|+|++-.- +.+..-.||.....+.. ++-..++|||.||...... +-...
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 457899999999999999999976322 11111134444443332 2445799999999643221 11234
Q ss_pred cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC----------CCCcchhhhhhhhcccc-hhcc-CC
Q 005218 258 AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP----------AADPERVKNQLGAEGLE-LEDW-GG 325 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~----------~~~~~~~~~~l~~~~~~-~~~~-~~ 325 (708)
+...|++|++.+ ......+..+++.+...++|+.+|-+|+|.. ..+.+++.+.+.+.... +... ..
T Consensus 112 ~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~ 189 (376)
T PF05049_consen 112 FYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS 189 (376)
T ss_dssp GGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S
T ss_pred ccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 678898777654 3456777888888999999999999999961 11222333333322111 1111 13
Q ss_pred cceEEEEeeecC--CCchhHHHHHHHH
Q 005218 326 KVQVVEVSAVKK--TGLDDLEVALLLQ 350 (708)
Q Consensus 326 ~~~vi~vSAktg--~GI~~L~~~I~~~ 350 (708)
..++|-+|+..- .....|.+.|...
T Consensus 190 ~P~VFLVS~~dl~~yDFp~L~~tL~~d 216 (376)
T PF05049_consen 190 EPQVFLVSSFDLSKYDFPKLEETLEKD 216 (376)
T ss_dssp S--EEEB-TTTTTSTTHHHHHHHHHHH
T ss_pred cCceEEEeCCCcccCChHHHHHHHHHH
Confidence 457899998764 4466787777764
No 322
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.80 E-value=9.6e-09 Score=111.51 Aligned_cols=83 Identities=23% Similarity=0.185 Sum_probs=64.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC----------------eeEEEeeCCCcchh---
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG----------------ASITFLDTPGHAAF--- 250 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g----------------~~v~liDTpG~~~f--- 250 (708)
++|+|+|.||+|||||+|+|++....+...|++|++.....+...+. .++.|+||||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999998876788899998877666655332 25999999995431
Q ss_pred ----hhhhhcccccccEEEEEEEccC
Q 005218 251 ----SAMRKRGAAVTDIVVLVVAADD 272 (708)
Q Consensus 251 ----~~~~~~~~~~aDivllVvDa~~ 272 (708)
.......++.+|++++|+|+..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 1122235689999999999863
No 323
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.78 E-value=2.8e-08 Score=103.22 Aligned_cols=161 Identities=20% Similarity=0.310 Sum_probs=97.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC------ccc---cccc---------------CceEEeeeEEEEEec---------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT------SLV---AKEA---------------GGITQHMGAFVVGMS--------- 234 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~------~~~---~~~~---------------~gtT~di~~~~v~~~--------- 234 (708)
++.+|.|.|.||+|||||+..|... .++ +.+. ..++.+...+.-..+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 5679999999999999999998432 111 1110 012223333322221
Q ss_pred ------------CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC
Q 005218 235 ------------TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 235 ------------~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~ 302 (708)
.|+.+.|+.|-|.-..... -...+|.+++|.-+.-|..-|.+.. --+.+-=|+|+||.|+.
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~ 202 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADRK 202 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccChh
Confidence 3578889999885433322 2357899999986655544444321 01223458999999975
Q ss_pred CCCc--chhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHHHcc
Q 005218 303 AADP--ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMN 355 (708)
Q Consensus 303 ~~~~--~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~ 355 (708)
++.. ..+...+..........++..|++.+||.+|+|+++|++.|.++.+.+.
T Consensus 203 ~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 203 GAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred hHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 4321 1111122111111223345679999999999999999999998776543
No 324
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.75 E-value=6.4e-09 Score=106.65 Aligned_cols=156 Identities=25% Similarity=0.383 Sum_probs=87.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC------ccc---cccc-C--------------ceEEeeeEEEEEec---------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT------SLV---AKEA-G--------------GITQHMGAFVVGMS--------- 234 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~------~~~---~~~~-~--------------gtT~di~~~~v~~~--------- 234 (708)
+..+|+|.|+||+|||||+++|... .+. +.+. | ....|...+.-...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4578999999999999999998431 111 1110 0 01112222221111
Q ss_pred ------------CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHH--HHHHhhhcCCCEEEEEeCCC
Q 005218 235 ------------TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLE--AIAHANAANVPIVVAINKCD 300 (708)
Q Consensus 235 ------------~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~--~l~~l~~~~~piIvViNK~D 300 (708)
.|+.+.|+.|-|.-...... ...+|.+++|+-..-|..-|... .+. ++=|+|+||+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---~~~aD~~v~v~~Pg~GD~iQ~~KaGimE------iaDi~vVNKaD 178 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---ADMADTVVLVLVPGLGDEIQAIKAGIME------IADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---HTTSSEEEEEEESSTCCCCCTB-TTHHH------H-SEEEEE--S
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---HHhcCeEEEEecCCCccHHHHHhhhhhh------hccEEEEeCCC
Confidence 46789999998854332222 36799999999877655444322 222 24489999999
Q ss_pred CCCCCcchhhhhhhhcccch--hccCCcceEEEEeeecCCCchhHHHHHHHHHHHc
Q 005218 301 KPAADPERVKNQLGAEGLEL--EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMM 354 (708)
Q Consensus 301 l~~~~~~~~~~~l~~~~~~~--~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~ 354 (708)
+..+ ++...++....... ....+..|++.+||.+|.|+++|.+.|.++...+
T Consensus 179 ~~gA--~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 179 RPGA--DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp HHHH--HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hHHH--HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 7532 22223322211000 0112246999999999999999999998865443
No 325
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.72 E-value=4.3e-08 Score=99.67 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=92.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccc--cCceEEeeeEEEEEecCCeeEEEeeCCCcchhh-------hhhh----c
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKE--AGGITQHMGAFVVGMSTGASITFLDTPGHAAFS-------AMRK----R 256 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~--~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~-------~~~~----~ 256 (708)
.+|+++|.+|+||||+.|.|++.....+. ....|.......... +|..++++||||.-+.. .... .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 37999999999999999999988765432 345566665555566 89999999999953321 1111 1
Q ss_pred ccccccEEEEEEEccCCCChhHHHHHHHhhh-cC----CCEEEEEeCCCCCCCCcchhhhhhhh-----cccchhccCCc
Q 005218 257 GAAVTDIVVLVVAADDGVMPQTLEAIAHANA-AN----VPIVVAINKCDKPAADPERVKNQLGA-----EGLELEDWGGK 326 (708)
Q Consensus 257 ~~~~aDivllVvDa~~g~~~q~~~~l~~l~~-~~----~piIvViNK~Dl~~~~~~~~~~~l~~-----~~~~~~~~~~~ 326 (708)
.....+++|||+... .++..+...+..+.. .+ ..+|||++.+|....+. +.+.+.. ....+...++
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~--~~~~l~~~~~~~l~~li~~c~~- 155 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS--LEDYLKKESNEALQELIEKCGG- 155 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT--HHHHHHHHHHHHHHHHHHHTTT-
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc--HHHHHhccCchhHhHHhhhcCC-
Confidence 345689999999988 577777766665542 12 34899999888754332 2222210 1111222333
Q ss_pred ceEEEEeee------cCCCchhHHHHHHHHHH
Q 005218 327 VQVVEVSAV------KKTGLDDLEVALLLQAE 352 (708)
Q Consensus 327 ~~vi~vSAk------tg~GI~~L~~~I~~~~~ 352 (708)
.++..+.+ ....+.+|++.|.....
T Consensus 156 -R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~ 186 (212)
T PF04548_consen 156 -RYHVFNNKTKDKEKDESQVSELLEKIEEMVQ 186 (212)
T ss_dssp -CEEECCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEeccccchhhhHHHHHHHHHHHHHHHH
Confidence 34444443 23456788877776554
No 326
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=8.9e-08 Score=102.71 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=65.4
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC-----------------CeeEEEeeCCCcch--
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-----------------GASITFLDTPGHAA-- 249 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~-----------------g~~v~liDTpG~~~-- 249 (708)
.++++|+|.||||||||+|+|+.........|.+|.+.....+..++ ..++.|+|.||.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 46899999999999999999999887678889999987666655431 13689999999432
Q ss_pred -----hhhhhhcccccccEEEEEEEccC
Q 005218 250 -----FSAMRKRGAAVTDIVVLVVAADD 272 (708)
Q Consensus 250 -----f~~~~~~~~~~aDivllVvDa~~ 272 (708)
.......-++.+|+++.|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 23333345789999999999873
No 327
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.71 E-value=2.7e-09 Score=102.73 Aligned_cols=159 Identities=17% Similarity=0.203 Sum_probs=115.3
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC--CeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST--GASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~--g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.++.++|.-++||||++.+.+...+...+...+..|+....+.+++ -.++.|||.+|+++|..|..-+++.+.++.+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 5689999999999999999999988877777777777666666632 24678999999999999999999999999999
Q ss_pred EEccCCCChhHHHHHHH-hh-------hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 268 VAADDGVMPQTLEAIAH-AN-------AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 268 vDa~~g~~~q~~~~l~~-l~-------~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
||.+...+......|.. +. ...+|+++..||||.......+.-..+.. +....+....+++|+|.+.+
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~----f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDN----FKKENGFEGWTETSAKENKN 181 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHH----HHhccCccceeeeccccccC
Confidence 99998655443333322 11 12346899999999853221111111111 11122344679999999999
Q ss_pred chhHHHHHHHHHH
Q 005218 340 LDDLEVALLLQAE 352 (708)
Q Consensus 340 I~~L~~~I~~~~~ 352 (708)
+++..+.+.+..-
T Consensus 182 i~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 182 IPEAQRELVEKIL 194 (229)
T ss_pred hhHHHHHHHHHHH
Confidence 9999888877543
No 328
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.68 E-value=6.6e-08 Score=94.94 Aligned_cols=143 Identities=21% Similarity=0.241 Sum_probs=81.6
Q ss_pred CC-CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeE---------------EEEEecCC---------------
Q 005218 188 RP-PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGA---------------FVVGMSTG--------------- 236 (708)
Q Consensus 188 ~~-~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~---------------~~v~~~~g--------------- 236 (708)
++ ..|.+.|+||+|||+|+.+++..-...-...-+|-|+.+ ..+...++
T Consensus 11 ~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l 90 (202)
T COG0378 11 RPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEEL 90 (202)
T ss_pred CceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHH
Confidence 44 689999999999999999975432211111112222211 00000001
Q ss_pred ------eeEEEeeCCCcchhhhhhhccccccc-EEEEEEEccCCCChhHHHHHHHhhhcCCC-----EEEEEeCCCCCC-
Q 005218 237 ------ASITFLDTPGHAAFSAMRKRGAAVTD-IVVLVVAADDGVMPQTLEAIAHANAANVP-----IVVAINKCDKPA- 303 (708)
Q Consensus 237 ------~~v~liDTpG~~~f~~~~~~~~~~aD-ivllVvDa~~g~~~q~~~~l~~l~~~~~p-----iIvViNK~Dl~~- 303 (708)
..+.|+.+.| ... ......-.| +-|+|+|.+.|....- .+=| =++|+||.||..
T Consensus 91 ~~~~~~~Dll~iEs~G--NL~--~~~sp~L~d~~~v~VidvteGe~~P~---------K~gP~i~~aDllVInK~DLa~~ 157 (202)
T COG0378 91 VLDFPDLDLLFIESVG--NLV--CPFSPDLGDHLRVVVIDVTEGEDIPR---------KGGPGIFKADLLVINKTDLAPY 157 (202)
T ss_pred hhcCCcCCEEEEecCc--cee--cccCcchhhceEEEEEECCCCCCCcc---------cCCCceeEeeEEEEehHHhHHH
Confidence 2455555555 110 001123344 8899999887642110 0112 489999999953
Q ss_pred --CCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHH
Q 005218 304 --ADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 304 --~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
.+.+...+... ......|++++|++||+|++++++++...
T Consensus 158 v~~dlevm~~da~-------~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 158 VGADLEVMARDAK-------EVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred hCccHHHHHHHHH-------HhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 23333333222 23456799999999999999999998764
No 329
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.61 E-value=4.1e-08 Score=97.88 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=99.4
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh-----hhhccccccc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA-----MRKRGAAVTD 262 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~-----~~~~~~~~aD 262 (708)
..+|.++|.+|+||||+=..+.....+- ...+|-|.|+....+.+-++.-+.+||..|++.|.. .....++..+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4689999999999999877776555443 566788999988887765668999999999987643 3334578999
Q ss_pred EEEEEEEccCCCChhHHHHHHHh----hh--cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeec
Q 005218 263 IVVLVVAADDGVMPQTLEAIAHA----NA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 263 ivllVvDa~~g~~~q~~~~l~~l----~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
++++|+|++......++...+.+ .. ....+.+.+.|+||...+..+..-+........-.....+.++++|-..
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwD 163 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIWD 163 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchhh
Confidence 99999999876555565555432 21 2344899999999976554433322221111111111234567776554
No 330
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.61 E-value=6.2e-08 Score=93.58 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=45.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
++.+|+++|.||+|||||+|+|.+.... .+..+|+|++..... . +..+.|+||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~--~--~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYIT--L--MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEE--c--CCCEEEEECcCC
Confidence 3568999999999999999999987764 488899999865433 2 235899999994
No 331
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.58 E-value=3e-07 Score=104.93 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=75.5
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccc-cc-cCceEEeeeEEEEEecCCeeEEEeeCCCcchhh------hh----
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KE-AGGITQHMGAFVVGMSTGASITFLDTPGHAAFS------AM---- 253 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~-~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~------~~---- 253 (708)
+.-..+|+++|.+|+|||||+|.|++..... .. .++||+. ....... +|..+.+|||||..+.. ..
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEE-CCceEEEEECCCCCccccchHHHHHHHHH
Confidence 4556789999999999999999999887543 33 3566653 3333344 78999999999976532 11
Q ss_pred hhccc--ccccEEEEEEEccCC-CChhHHHHHHHhh---hc--CCCEEEEEeCCCCCC
Q 005218 254 RKRGA--AVTDIVVLVVAADDG-VMPQTLEAIAHAN---AA--NVPIVVAINKCDKPA 303 (708)
Q Consensus 254 ~~~~~--~~aDivllVvDa~~g-~~~q~~~~l~~l~---~~--~~piIvViNK~Dl~~ 303 (708)
....+ ..+|++|||...+.. ...++...++.+. .. -.-+|||+|..|...
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11122 247999999876532 2223333444332 11 234899999999864
No 332
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.57 E-value=8.1e-08 Score=94.48 Aligned_cols=58 Identities=26% Similarity=0.481 Sum_probs=47.7
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
...+.+++++|.||+|||||+|+|.+... ..+..||+|++.....+ +..+.++||||.
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~----~~~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL----DKKVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe----CCCEEEEECcCC
Confidence 34568999999999999999999998766 55888999998765543 246899999994
No 333
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.57 E-value=9.6e-08 Score=100.64 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=38.9
Q ss_pred CCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHH
Q 005218 289 NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 289 ~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
..+-++|+||+|+.......+...+.. +.......+++++||++|+|+++|+++|..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~----lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIAC----AREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHH----HHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456799999999964321122211111 1122235689999999999999999999764
No 334
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.56 E-value=1e-07 Score=104.63 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=45.3
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCc------ccccccCceEEeeeEEEEEecCCeeEEEeeCCCcch
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTS------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~------~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~ 249 (708)
+.++.++|.+|||||||+|+|++.. ...+..||+|++.....+ +..+.++||||...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~----~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL----DDGHSLYDTPGIIN 216 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe----CCCCEEEECCCCCC
Confidence 5789999999999999999998753 245788999999775543 22467999999653
No 335
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.55 E-value=6.7e-07 Score=90.26 Aligned_cols=82 Identities=26% Similarity=0.274 Sum_probs=66.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh-------hhhhccccccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS-------AMRKRGAAVTD 262 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~-------~~~~~~~~~aD 262 (708)
-+|+++|-|.+|||||+..+............||.......+.+ +|..+.++|.||+-+-. ......++.||
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGRQviavArtaD 141 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGRQVIAVARTAD 141 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCceEEEEeeccc
Confidence 58999999999999999999987776666667888877788888 99999999999964322 12223468899
Q ss_pred EEEEEEEccC
Q 005218 263 IVVLVVAADD 272 (708)
Q Consensus 263 ivllVvDa~~ 272 (708)
++++|+|++.
T Consensus 142 lilMvLDatk 151 (364)
T KOG1486|consen 142 LILMVLDATK 151 (364)
T ss_pred EEEEEecCCc
Confidence 9999999986
No 336
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.53 E-value=1.7e-07 Score=90.23 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=65.3
Q ss_pred hhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEE
Q 005218 252 AMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVE 331 (708)
Q Consensus 252 ~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~ 331 (708)
.+..+.++.+|++++|+|++++...++.+....+...++|+++|+||+|+... ... ...... ... ...++++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~--~~~-~~~~~~---~~~--~~~~~~~ 75 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK--EVL-EKWKSI---KES--EGIPVVY 75 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH--HHH-HHHHHH---HHh--CCCcEEE
Confidence 44555667899999999998876666665555555568999999999999532 111 111110 011 1257899
Q ss_pred EeeecCCCchhHHHHHHHHH
Q 005218 332 VSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~~~~ 351 (708)
+||++|.|+++|++.|...+
T Consensus 76 iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 76 VSAKERLGTKILRRTIKELA 95 (156)
T ss_pred EEccccccHHHHHHHHHHHH
Confidence 99999999999999998764
No 337
>PRK13796 GTPase YqeH; Provisional
Probab=98.47 E-value=6.4e-07 Score=98.55 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=44.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc------ccccccCceEEeeeEEEEEecCCeeEEEeeCCCcc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~------~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~ 248 (708)
++.++.++|.||||||||+|+|++.. ...+..||||++.....+. ++ ..++||||..
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~--~~--~~l~DTPGi~ 221 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD--DG--SFLYDTPGII 221 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC--CC--cEEEECCCcc
Confidence 45689999999999999999998542 2357889999997765542 33 4899999964
No 338
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.45 E-value=1e-06 Score=77.44 Aligned_cols=79 Identities=15% Similarity=0.359 Sum_probs=69.6
Q ss_pred eeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--
Q 005218 598 AEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW-- 675 (708)
Q Consensus 598 a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~-- 675 (708)
..|..+|++++.| +++..+|..|.++.|.+++++..+. ..+|.||+.++++++++..|+.|+|.|.+.
T Consensus 7 ~~V~~vf~~~g~g-------~vv~G~v~~G~i~~gd~v~i~P~~~---~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~ 76 (91)
T cd03693 7 LPIQDVYKIGGIG-------TVPVGRVETGVLKPGMVVTFAPAGV---TGEVKSVEMHHEPLEEALPGDNVGFNVKNVSK 76 (91)
T ss_pred EEEEEEEEeCCce-------EEEEEEEecceeecCCEEEECCCCc---EEEEEEEEECCcCcCEECCCCEEEEEECCCCH
Confidence 4677899888766 6777799999999999999999874 479999999999999999999999999984
Q ss_pred CCCCCCCEEEE
Q 005218 676 HDFQVGDIIQC 686 (708)
Q Consensus 676 ~~~~~gD~ie~ 686 (708)
++++.||+|-.
T Consensus 77 ~~v~~G~vl~~ 87 (91)
T cd03693 77 KDIKRGDVAGD 87 (91)
T ss_pred HHcCCcCEEcc
Confidence 68999998853
No 339
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=9.8e-07 Score=93.37 Aligned_cols=116 Identities=23% Similarity=0.331 Sum_probs=83.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc---cccCceEEeeeEEEEEecC----C-----------------------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA---KEAGGITQHMGAFVVGMST----G----------------------- 236 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~---~~~~gtT~di~~~~v~~~~----g----------------------- 236 (708)
...|-|.++|+-..||||+++.|+..++.. ...|+ |..+...+..-.. |
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPT-td~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPT-TDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCC-cceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 345789999999999999999999888753 22222 2222222111000 0
Q ss_pred ------------eeEEEeeCCCcc-----------hhhhhhhcccccccEEEEEEEccC-CCChhHHHHHHHhhhcCCCE
Q 005218 237 ------------ASITFLDTPGHA-----------AFSAMRKRGAAVTDIVVLVVAADD-GVMPQTLEAIAHANAANVPI 292 (708)
Q Consensus 237 ------------~~v~liDTpG~~-----------~f~~~~~~~~~~aDivllVvDa~~-g~~~q~~~~l~~l~~~~~pi 292 (708)
..++++||||+- +|.....-.+..+|.+++++|+.. .+.++..+.+..++...-.+
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 259999999953 244444455789999999999976 57788889999998777789
Q ss_pred EEEEeCCCCCC
Q 005218 293 VVAINKCDKPA 303 (708)
Q Consensus 293 IvViNK~Dl~~ 303 (708)
-||+||.|.++
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 99999999864
No 340
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.40 E-value=3.3e-07 Score=91.32 Aligned_cols=56 Identities=29% Similarity=0.424 Sum_probs=45.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc---------ccccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS---------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~---------~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
++..++++|.||+|||||+|+|++.. ...+..+|||++.....+. ..+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~----~~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG----NGKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC----CCCEEEeCcCC
Confidence 45789999999999999999998743 2446778999998766542 25899999994
No 341
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=2.1e-06 Score=94.59 Aligned_cols=110 Identities=25% Similarity=0.359 Sum_probs=85.0
Q ss_pred CCCCCCCEEEEEecCCCCchHHHHHhhcCc--ccccccC-ceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhccccc
Q 005218 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTS--LVAKEAG-GITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAV 260 (708)
Q Consensus 184 ~~~~~~~~V~IvG~~nvGKSSLln~L~~~~--~~~~~~~-gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~ 260 (708)
+..+.|+.|+++|+||+|||||+..|.... ..++++. .+|. .-....+++|+.+|. +...| ......
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~--Dl~~m-iDvaKI 133 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPS--DLHQM-IDVAKI 133 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChH--HHHHH-HhHHHh
Confidence 456788899999999999999999997533 2333333 2332 222567899999993 33333 334578
Q ss_pred ccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCC
Q 005218 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPA 303 (708)
Q Consensus 261 aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~ 303 (708)
||++||++|+.-|..-.+.+.+..+...+.| ++-|++..|+..
T Consensus 134 aDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 134 ADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred hheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc
Confidence 9999999999999999999999999999999 777999999964
No 342
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.35 E-value=5.9e-07 Score=85.22 Aligned_cols=53 Identities=30% Similarity=0.472 Sum_probs=43.4
Q ss_pred EEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
+++++|.+|+|||||+|+|++... ..+..+|+|++.....+ ++ .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL---TP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe---CC-CEEEEECCCc
Confidence 899999999999999999998776 44777888888654433 22 6899999995
No 343
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.34 E-value=1.4e-06 Score=92.41 Aligned_cols=113 Identities=19% Similarity=0.334 Sum_probs=69.8
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccc--c------CceEEeeeEEEEEec-CC--eeEEEeeCCCcchh--------
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKE--A------GGITQHMGAFVVGMS-TG--ASITFLDTPGHAAF-------- 250 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~--~------~gtT~di~~~~v~~~-~g--~~v~liDTpG~~~f-------- 250 (708)
++|.++|.+|+|||||+|.|++....... . ...|..+......+. ++ ..++++||||..+.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 58999999999999999999887654321 0 011122222222222 33 46889999994321
Q ss_pred ----------hhhhh-------ccc--ccccEEEEEEEcc-CCCChhHHHHHHHhhhcCCCEEEEEeCCCCCC
Q 005218 251 ----------SAMRK-------RGA--AVTDIVVLVVAAD-DGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 251 ----------~~~~~-------~~~--~~aDivllVvDa~-~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~ 303 (708)
..... ... ...|++|+.++++ +++.+.+++.++.+.. .+++|-|+.|.|...
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccC
Confidence 11000 011 4578999999986 5788999999988864 488999999999864
No 344
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.34 E-value=6.6e-07 Score=86.25 Aligned_cols=57 Identities=28% Similarity=0.378 Sum_probs=46.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
.++.+++++|.||+|||||+|+|.+... ..+..+++|++.....+ +..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL----DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe----cCCEEEEECCCC
Confidence 4678999999999999999999998764 45777899998765443 356999999994
No 345
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.33 E-value=5e-06 Score=69.58 Aligned_cols=80 Identities=34% Similarity=0.553 Sum_probs=68.5
Q ss_pred eeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcccCC
Q 005218 598 AEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHD 677 (708)
Q Consensus 598 a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~~~ 677 (708)
+.|..+|..++.+ .++.|+|.+|.+++|..+++.+.+. -+..+|.+|++.+.++.++.+|+.|++...++.+
T Consensus 3 ~~v~~~~~~~~~g-------~v~~~rv~~G~l~~g~~v~~~~~~~-~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~~ 74 (83)
T cd01342 3 ALVFKVFKDKGRG-------TVATGRVESGTLKKGDKVRVGPGGG-GVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKDD 74 (83)
T ss_pred eEEEEEEEeCCce-------EEEEEEEeeCEEecCCEEEEecCCc-eeEEEEeEeEecCceeceecCCCEEEEEEccccc
Confidence 4566777766444 8999999999999999999998532 3568999999999999999999999999988889
Q ss_pred CCCCCEEE
Q 005218 678 FQVGDIIQ 685 (708)
Q Consensus 678 ~~~gD~ie 685 (708)
++.||.+.
T Consensus 75 ~~~g~~l~ 82 (83)
T cd01342 75 IKIGDTLT 82 (83)
T ss_pred cCCCCEec
Confidence 99999874
No 346
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.33 E-value=2e-06 Score=87.30 Aligned_cols=82 Identities=23% Similarity=0.185 Sum_probs=63.0
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh-------hhhhcccccccE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS-------AMRKRGAAVTDI 263 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~-------~~~~~~~~~aDi 263 (708)
+|.++|-|.+|||||+..|.+....+...-++|-......+.+ ++-++.+.|.||+-+-. ......++.|++
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y-~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY-KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec-cccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 8999999999999999999987766655556666655566666 89999999999964322 222344688999
Q ss_pred EEEEEEccCC
Q 005218 264 VVLVVAADDG 273 (708)
Q Consensus 264 vllVvDa~~g 273 (708)
+++|+|+..+
T Consensus 140 i~~vld~~kp 149 (358)
T KOG1487|consen 140 IFIVLDVLKP 149 (358)
T ss_pred EEEEeeccCc
Confidence 9999998753
No 347
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.31 E-value=1.9e-06 Score=85.83 Aligned_cols=103 Identities=19% Similarity=0.105 Sum_probs=64.9
Q ss_pred CcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcch-hhhhhhhcccchhccC
Q 005218 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER-VKNQLGAEGLELEDWG 324 (708)
Q Consensus 246 G~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~-~~~~l~~~~~~~~~~~ 324 (708)
.+..|..++..+++.+|++++|+|+++.... +...+. ....++|+++|+||+|+....... ....... ........
T Consensus 20 ~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~-~~~~l~-~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~ 96 (190)
T cd01855 20 DEDFILNLLSSISPKKALVVHVVDIFDFPGS-LIPRLR-LFGGNNPVILVGNKIDLLPKDKNLVRIKNWLR-AKAAAGLG 96 (190)
T ss_pred hHHHHHHHHHhcccCCcEEEEEEECccCCCc-cchhHH-HhcCCCcEEEEEEchhcCCCCCCHHHHHHHHH-HHHHhhcC
Confidence 3344677888889999999999999874322 222221 223578999999999996432111 1111110 00001111
Q ss_pred -CcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 325 -GKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 325 -~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
...+++++||++|.|+++|++.|...+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 113689999999999999999998754
No 348
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.31 E-value=9.1e-07 Score=94.21 Aligned_cols=59 Identities=25% Similarity=0.450 Sum_probs=48.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCcc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~ 248 (708)
..++.+++++|.||+|||||+|+|++... ..+..+|+|++..... . +..+.|+||||..
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~--~~~~~l~DtPGi~ 177 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK--L--GKGLELLDTPGIL 177 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE--e--CCcEEEEECCCcC
Confidence 34678999999999999999999998876 4588899999975433 2 3468999999963
No 349
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.31 E-value=3.5e-06 Score=72.59 Aligned_cols=78 Identities=22% Similarity=0.433 Sum_probs=67.2
Q ss_pred eeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--
Q 005218 598 AEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW-- 675 (708)
Q Consensus 598 a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~-- 675 (708)
.-|..+|++++.| .++..+|..|.++.|.++.++..+. .++|+||+.++++++++.+|++++|.+++.
T Consensus 3 ~~i~~~~~~~~~g-------~vv~G~v~sG~i~~g~~v~~~p~~~---~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~ 72 (83)
T cd03696 3 LPIDRVFTVKGQG-------TVVTGTVLSGSVKVGDKVEILPLGE---ETRVRSIQVHGKDVEEAKAGDRVALNLTGVDA 72 (83)
T ss_pred EEEEEEEEcCCcE-------EEEEEEEeecEEeCCCEEEECCCCc---eEEEEEEEECCcCcCEEcCCCEEEEEEcCCCH
Confidence 3466788877665 5666699999999999999988764 489999999999999999999999999886
Q ss_pred CCCCCCCEEE
Q 005218 676 HDFQVGDIIQ 685 (708)
Q Consensus 676 ~~~~~gD~ie 685 (708)
.+++.||++-
T Consensus 73 ~~i~~G~vl~ 82 (83)
T cd03696 73 KDLERGDVLS 82 (83)
T ss_pred HHcCCccEEc
Confidence 5899999874
No 350
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.28 E-value=8.4e-07 Score=95.91 Aligned_cols=58 Identities=29% Similarity=0.407 Sum_probs=49.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
.++..++.++|-||||||||+|+|++...+. +..||+|.+.....+. ..+.|+||||.
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~----~~i~LlDtPGi 187 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD----DGIYLLDTPGI 187 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC----CCeEEecCCCc
Confidence 4566889999999999999999999888754 8899999998766654 24999999995
No 351
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.25 E-value=1.6e-06 Score=84.94 Aligned_cols=58 Identities=31% Similarity=0.492 Sum_probs=46.9
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
.+.+++++++|.+|+|||||+|+|.+..+ ..+..+++|.+.....+. ..+.++||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~----~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS----PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec----CCEEEEECCCC
Confidence 34567999999999999999999998776 446778899887665442 56899999995
No 352
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.25 E-value=1.2e-06 Score=92.68 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=46.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
.++.+++++|.||+|||||+|+|.+... ..+..+|+|+......+ +..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL----SDGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe----CCCEEEEECCCc
Confidence 4568999999999999999999998775 45788999998754333 236899999996
No 353
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.21 E-value=2.9e-06 Score=88.30 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=65.0
Q ss_pred chhhhhhhcccccccEEEEEEEccCCC-ChhHHHHH-HHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCC
Q 005218 248 AAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEAI-AHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGG 325 (708)
Q Consensus 248 ~~f~~~~~~~~~~aDivllVvDa~~g~-~~q~~~~l-~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~ 325 (708)
+++..+...+++++|.+++|+|++++. ....++.| ..+...++|+++|+||+||.+.. ....+... .+..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~--~~~~~~~~---~~~~~-- 96 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE--DMEKEQLD---IYRNI-- 96 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH--HHHHHHHH---HHHHC--
Confidence 566777777899999999999998744 33333333 33445789999999999995321 11111111 11122
Q ss_pred cceEEEEeeecCCCchhHHHHHHH
Q 005218 326 KVQVVEVSAVKKTGLDDLEVALLL 349 (708)
Q Consensus 326 ~~~vi~vSAktg~GI~~L~~~I~~ 349 (708)
..+++++||++|.|+++|++.|..
T Consensus 97 g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 97 GYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCeEEEEecCCchhHHHHHhhhcC
Confidence 358999999999999999987753
No 354
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.3e-06 Score=93.63 Aligned_cols=117 Identities=22% Similarity=0.327 Sum_probs=78.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeE--------------------------------------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGA-------------------------------------- 228 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~-------------------------------------- 228 (708)
++.-+|+|.|+.++||||++|+++.++.-.+..+.+|--+..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 456799999999999999999998877654444333321100
Q ss_pred -----EEEEecCC------eeEEEeeCCCcch---hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EE
Q 005218 229 -----FVVGMSTG------ASITFLDTPGHAA---FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IV 293 (708)
Q Consensus 229 -----~~v~~~~g------~~v~liDTpG~~~---f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iI 293 (708)
..+.++++ ..+.++|.||..- +..........+|++|||+.+.+..+....+.+...... +| ++
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniF 265 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIF 265 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEE
Confidence 00111111 1578999999643 333444556899999999999876655556666655544 55 88
Q ss_pred EEEeCCCCCCC
Q 005218 294 VAINKCDKPAA 304 (708)
Q Consensus 294 vViNK~Dl~~~ 304 (708)
|+.||||....
T Consensus 266 IlnnkwDasas 276 (749)
T KOG0448|consen 266 ILNNKWDASAS 276 (749)
T ss_pred EEechhhhhcc
Confidence 88899998643
No 355
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.18 E-value=5e-06 Score=80.25 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=60.9
Q ss_pred cccccccEEEEEEEccCCCChhHHHHHHHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEe
Q 005218 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vS 333 (708)
+.+..+|++++|+|+.++....+......+.. .++|+|+|+||+|+.+ .+.....+.... ... .+.++++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~--~~~~~~~~~~~~----~~~-~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP--TWVTARWVKILS----KEY-PTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC--HHHHHHHHHHHh----cCC-cEEEEEee
Confidence 45789999999999998765555555555443 3589999999999953 222222222111 111 12368899
Q ss_pred eecCCCchhHHHHHHHHHH
Q 005218 334 AVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~~~ 352 (708)
|+++.|+++|++.|.....
T Consensus 77 a~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 77 INNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred ccccccHHHHHHHHHHHHh
Confidence 9999999999999976543
No 356
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.17 E-value=6.7e-06 Score=80.62 Aligned_cols=98 Identities=23% Similarity=0.192 Sum_probs=65.3
Q ss_pred CCCcch-hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhc
Q 005218 244 TPGHAA-FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELED 322 (708)
Q Consensus 244 TpG~~~-f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~ 322 (708)
-|||.. ........+..||++++|+|++++........+..+ .++|+++|+||+|+.+. +.....+.. +..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~--~~~~~~~~~----~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP--KKTKKWLKY----FES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh--HHHHHHHHH----HHh
Confidence 467643 334455678999999999999876654444444433 36899999999999532 211111110 011
Q ss_pred cCCcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 323 WGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 323 ~~~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
. ..+++++||+++.|+++|.+.|....
T Consensus 74 ~--~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 K--GEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred c--CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 1 23689999999999999999988754
No 357
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.15 E-value=3.6e-06 Score=91.71 Aligned_cols=83 Identities=22% Similarity=0.136 Sum_probs=65.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCC----------------eeEEEeeCCCcch---
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTG----------------ASITFLDTPGHAA--- 249 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g----------------~~v~liDTpG~~~--- 249 (708)
.+++|+|.||+|||||+|+|++... .....|.+|.+.....+..++. ..+.++|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999999887 6677788888877766665332 3689999999543
Q ss_pred ----hhhhhhcccccccEEEEEEEccC
Q 005218 250 ----FSAMRKRGAAVTDIVVLVVAADD 272 (708)
Q Consensus 250 ----f~~~~~~~~~~aDivllVvDa~~ 272 (708)
........++.+|++++|+|+.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 22233345789999999999864
No 358
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.13 E-value=1.2e-05 Score=69.69 Aligned_cols=79 Identities=24% Similarity=0.239 Sum_probs=64.7
Q ss_pred CCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcc-ccceEEEEe---cccCCcccccCCCCcEEEeccCCCCCC
Q 005218 361 DGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH-EWGRIRAIR---DMVGKSTDKARPAMPVEIEGLKGLPMA 436 (708)
Q Consensus 361 ~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~-~~~kVr~i~---~~~~~~v~~a~~g~~V~i~gl~~~~~~ 436 (708)
+.|+.++|+.+..+++.|.++.++|.+|+|++|+.+.... ...+|..|+ ......++++.+|+.+.+.|+++. .+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~-~~ 79 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNREEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGL-RV 79 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCCCcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCC-cC
Confidence 3588999999999999999999999999999999997643 123444444 444468899999999999999886 78
Q ss_pred CCeE
Q 005218 437 GDDI 440 (708)
Q Consensus 437 Gd~~ 440 (708)
||++
T Consensus 80 Gdtl 83 (85)
T cd03690 80 GDVL 83 (85)
T ss_pred cccc
Confidence 9886
No 359
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.13 E-value=6.7e-06 Score=84.41 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=59.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcC--cccc-cccCceEEeeeEEEEEec--CCeeEEEeeCCCcchhhh------hhhccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQT--SLVA-KEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSA------MRKRGA 258 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~--~~~~-~~~~gtT~di~~~~v~~~--~g~~v~liDTpG~~~f~~------~~~~~~ 258 (708)
..|+|+|++++|||||+|.|++. .+.. .....+|+.+........ .+..+.++||||..+... +....+
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l 87 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFAL 87 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHH
Confidence 46899999999999999999988 6765 444677777665554442 368899999999644321 122233
Q ss_pred c--cccEEEEEEEccC
Q 005218 259 A--VTDIVVLVVAADD 272 (708)
Q Consensus 259 ~--~aDivllVvDa~~ 272 (708)
. .+|++|+..+...
T Consensus 88 ~~llss~~i~n~~~~~ 103 (224)
T cd01851 88 ATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHhCEEEEeccCcc
Confidence 3 4899999887754
No 360
>PRK12289 GTPase RsgA; Reviewed
Probab=98.12 E-value=2.5e-06 Score=93.06 Aligned_cols=58 Identities=28% Similarity=0.445 Sum_probs=42.5
Q ss_pred CEEEEEecCCCCchHHHHHhhcCccc-ccccCc-------eEEeeeEEEEEecCCeeEEEeeCCCcchhh
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGG-------ITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~g-------tT~di~~~~v~~~~g~~v~liDTpG~~~f~ 251 (708)
..++|+|+||||||||+|+|++.... ....++ ||++...+.+ ++|. .|+||||...+.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~~g~--~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--PNGG--LLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--CCCc--EEEeCCCccccc
Confidence 45899999999999999999976543 355555 7887754433 2332 799999976554
No 361
>PRK12288 GTPase RsgA; Reviewed
Probab=98.09 E-value=3.4e-06 Score=91.95 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=40.8
Q ss_pred CEEEEEecCCCCchHHHHHhhcCccc-ccccC-------ceEEeeeEEEEEecCCeeEEEeeCCCcchhh
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLV-AKEAG-------GITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~-------gtT~di~~~~v~~~~g~~v~liDTpG~~~f~ 251 (708)
..++|+|.||||||||+|+|++.... ..+.+ .||+....+.+. .| ..|+||||.+.|.
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~ 271 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFG 271 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCccc
Confidence 45899999999999999999976543 23333 356655444442 23 2499999988775
No 362
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.09 E-value=2.6e-06 Score=77.72 Aligned_cols=112 Identities=17% Similarity=0.126 Sum_probs=68.8
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCc-eEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGG-ITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~g-tT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
.+|+++|..|+|||+|+.++....+.. .+. .|.. +......+.+.++.+++|+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~--~~~~~t~~------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDY--VPTVFTIG------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccc--cCceehhh------------------------hhhccccccCCCCEEEEEE
Confidence 379999999999999999996655532 221 1110 2223344567889999889
Q ss_pred EccCCCChh--HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 269 AADDGVMPQ--TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 269 Da~~g~~~q--~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+.+...... |...+......+.|.+++.||.|+.... .+.... ..+++++|+++|.|+.
T Consensus 55 ~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~--~~~~~~------------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 55 RVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEER--QVATEE------------GLEFAETSAKTPEEGE 115 (124)
T ss_pred EccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhC--cCCHHH------------HHHHHHHhCCCcchhh
Confidence 877632221 3333333334567889999999984211 111110 1245678999999884
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.07 E-value=8.3e-06 Score=78.59 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=56.3
Q ss_pred cEEEEEEEccCCCChhHHHHH-HHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 262 DIVVLVVAADDGVMPQTLEAI-AHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~l-~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|++++|+|+.++......... ..+...++|+|+|+||+|+... +.....+... ... ...+++++||++|.|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~--~~~~~~~~~~----~~~-~~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK--EVLRKWLAYL----RHS-YPTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH--HHHHHHHHHH----Hhh-CCceEEEEeccCCcCh
Confidence 789999999886554444333 3555678999999999999532 2221111111 111 1246899999999999
Q ss_pred hhHHHHHHHHH
Q 005218 341 DDLEVALLLQA 351 (708)
Q Consensus 341 ~~L~~~I~~~~ 351 (708)
++|++.|....
T Consensus 74 ~~L~~~i~~~~ 84 (155)
T cd01849 74 EKKESAFTKQT 84 (155)
T ss_pred hhHHHHHHHHh
Confidence 99999987653
No 364
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.06 E-value=7.5e-06 Score=86.37 Aligned_cols=85 Identities=19% Similarity=0.142 Sum_probs=67.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC----------------CeeEEEeeCCCcch--
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST----------------GASITFLDTPGHAA-- 249 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~----------------g~~v~liDTpG~~~-- 249 (708)
..++++|+|.||+|||||+|+|++........|.+|.|.....+...+ ...++++|.||.-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 345999999999999999999999988888889999998877776531 13689999999532
Q ss_pred -----hhhhhhcccccccEEEEEEEccC
Q 005218 250 -----FSAMRKRGAAVTDIVVLVVAADD 272 (708)
Q Consensus 250 -----f~~~~~~~~~~aDivllVvDa~~ 272 (708)
...-....++.+|.++.|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22223345789999999999865
No 365
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.05 E-value=8.1e-06 Score=86.47 Aligned_cols=99 Identities=21% Similarity=0.222 Sum_probs=66.8
Q ss_pred CCCcch-hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhc
Q 005218 244 TPGHAA-FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELED 322 (708)
Q Consensus 244 TpG~~~-f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~ 322 (708)
-|||.. ........+..+|++++|+|+.++...........+ .++|+|+|+||+|+.+. ......... +..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~--~~~~~~~~~----~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP--AVTKQWLKY----FEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH--HHHHHHHHH----HHH
Confidence 378753 334455678999999999999876655444444444 36899999999999532 111111110 011
Q ss_pred cCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 323 WGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 323 ~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
. ..+++++||+++.|+++|++.|...+.
T Consensus 76 ~--~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 K--GIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred c--CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 1 247899999999999999999887654
No 366
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.05 E-value=3.9e-05 Score=66.12 Aligned_cols=76 Identities=17% Similarity=0.328 Sum_probs=66.2
Q ss_pred eeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcccC-
Q 005218 598 AEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWH- 676 (708)
Q Consensus 598 a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~~- 676 (708)
..|..+|+.+ .+ .+...+|..|.++.|..+.++..+.. .+|+||+.++++++++..|+.+++.|++.+
T Consensus 4 ~~V~~v~~~~-~g-------~vv~G~v~~G~i~~Gd~v~i~P~~~~---~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~ 72 (83)
T cd03698 4 LPISDKYKDQ-GG-------TVVSGKVESGSIQKGDTLLVMPSKES---VEVKSIYVDDEEVDYAVAGENVRLKLKGIDE 72 (83)
T ss_pred EEEEeEEEcC-CC-------cEEEEEEeeeEEeCCCEEEEeCCCcE---EEEEEEEECCeECCEECCCCEEEEEECCCCH
Confidence 3566788776 54 67777999999999999999998754 699999999999999999999999999854
Q ss_pred -CCCCCCEE
Q 005218 677 -DFQVGDII 684 (708)
Q Consensus 677 -~~~~gD~i 684 (708)
+++.||+|
T Consensus 73 ~~v~~G~vl 81 (83)
T cd03698 73 EDISPGDVL 81 (83)
T ss_pred HHCCCCCEE
Confidence 89999987
No 367
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.04 E-value=4.6e-05 Score=65.44 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=65.6
Q ss_pred eeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcccCC
Q 005218 598 AEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHD 677 (708)
Q Consensus 598 a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~~~ 677 (708)
.-|..+|+.++.+ ..+..+|..|.++.|.++.++..+.. .+|.||+.+.++++++..|+.|||.+.+..+
T Consensus 3 ~~V~dv~k~~~~~-------~~v~Gkv~~G~v~~Gd~v~~~P~~~~---~~V~si~~~~~~~~~a~aGd~v~l~l~~~~~ 72 (81)
T cd03695 3 FPVQYVIRPNADF-------RGYAGTIASGSIRVGDEVVVLPSGKT---SRVKSIETFDGELDEAGAGESVTLTLEDEID 72 (81)
T ss_pred eeEEEEEeeCCCc-------EEEEEEEccceEECCCEEEEcCCCCe---EEEEEEEECCcEeCEEcCCCEEEEEECCccc
Confidence 3466788765543 34556999999999999999987754 6999999999999999999999999998889
Q ss_pred CCCCCEE
Q 005218 678 FQVGDII 684 (708)
Q Consensus 678 ~~~gD~i 684 (708)
++.||+|
T Consensus 73 i~~G~vl 79 (81)
T cd03695 73 VSRGDVI 79 (81)
T ss_pred cCCCCEE
Confidence 9999987
No 368
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.03 E-value=4e-05 Score=66.74 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=67.2
Q ss_pred eeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeC--CeEEEEEEEeeeeccccccceeccCCeEEEEEccc
Q 005218 598 AEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRS--GEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW 675 (708)
Q Consensus 598 a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~--~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~ 675 (708)
.-|..+|++++.| +|+..+|..|.+++|+++.++.. |+ -+..+|.||+.+++.++++..|+.|++.+.+.
T Consensus 3 ~~I~~vf~v~g~G-------tVv~G~v~~G~v~~g~~v~~~P~~~g~-~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i 74 (87)
T cd03694 3 FQIDEIYSVPGVG-------TVVGGTVSKGVIRLGDTLLLGPDQDGS-FRPVTVKSIHRNRSPVRVVRAGQSASLALKKI 74 (87)
T ss_pred EEEEeEEEcCCcc-------eEEEEEEecCEEeCCCEEEECCCCCCC-EeEEEEEEEEECCeECCEECCCCEEEEEEcCC
Confidence 3466789887765 78888999999999999999986 33 23589999999999999999999999999875
Q ss_pred --CCCCCCCEE
Q 005218 676 --HDFQVGDII 684 (708)
Q Consensus 676 --~~~~~gD~i 684 (708)
.+++.||++
T Consensus 75 ~~~~i~~G~vl 85 (87)
T cd03694 75 DRSLLRKGMVL 85 (87)
T ss_pred CHHHcCCccEE
Confidence 488889886
No 369
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.03 E-value=3.3e-05 Score=66.47 Aligned_cols=76 Identities=26% Similarity=0.234 Sum_probs=62.2
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcccc--ceEEEE---ecccCCcccccCCCCcEEEeccCCCCCCCCe
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW--GRIRAI---RDMVGKSTDKARPAMPVEIEGLKGLPMAGDD 439 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~--~kVr~i---~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~ 439 (708)
.++|+++..+++.|.++.+++.+|+|++||.|...... .+|..| ......+++++.+|+.+.|.|++++ .+||+
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdt 80 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQT-RTGDT 80 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCc-ccCCE
Confidence 46889999999999999999999999999999875422 234444 4445578899999999999999886 78998
Q ss_pred EE
Q 005218 440 II 441 (708)
Q Consensus 440 ~~ 441 (708)
+.
T Consensus 81 l~ 82 (83)
T cd04092 81 LV 82 (83)
T ss_pred Ee
Confidence 75
No 370
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.00 E-value=1e-05 Score=77.79 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=42.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
...+++++|.+|+|||||+|+|.+.... .++.+|+|.+.... . .+..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLV--K--ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEE--E--cCCCEEEEECcCC
Confidence 4568999999999999999999976543 36677888765422 2 2347999999994
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.99 E-value=4e-05 Score=82.75 Aligned_cols=145 Identities=20% Similarity=0.230 Sum_probs=79.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC------cccc--ccc--C---------ceEEeeeEEEEE---------------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT------SLVA--KEA--G---------GITQHMGAFVVG--------------- 232 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~------~~~~--~~~--~---------gtT~di~~~~v~--------------- 232 (708)
+++..++++|++|+||||++..|... ++.. .+. . .....+......
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999988432 1111 000 0 000011111100
Q ss_pred -ecCCeeEEEeeCCCcchhhhh----hhc---c-----cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCC
Q 005218 233 -MSTGASITFLDTPGHAAFSAM----RKR---G-----AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKC 299 (708)
Q Consensus 233 -~~~g~~v~liDTpG~~~f~~~----~~~---~-----~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~ 299 (708)
...++.+.|+||||....... ... . -...+..++|+|++.+. ............--+.-+++||+
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~~~giIlTKl 269 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVGLTGIILTKL 269 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCCCCEEEEECC
Confidence 015678999999995432211 111 1 13467899999998643 22222222221112457899999
Q ss_pred CCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHH
Q 005218 300 DKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (708)
Q Consensus 300 Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~ 345 (708)
|... ..-.+....... ..|+.+++ +|+++++|..
T Consensus 270 D~t~-~~G~~l~~~~~~---------~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 270 DGTA-KGGVVFAIADEL---------GIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCC-CccHHHHHHHHH---------CCCEEEEe--CCCChhhCcc
Confidence 9642 222222222211 35888888 8999988753
No 372
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.99 E-value=6.3e-06 Score=79.78 Aligned_cols=60 Identities=27% Similarity=0.388 Sum_probs=35.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCccc----ccc----cCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLV----AKE----AGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~----~~~----~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~ 252 (708)
+..++++|++|||||||+|+|...... ++. -..||+..... .++. ...++||||.+.|..
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~--~l~~--g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELF--PLPD--GGYIIDTPGFRSFGL 102 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEE--EETT--SEEEECSHHHHT--G
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEE--ecCC--CcEEEECCCCCcccc
Confidence 368999999999999999999876321 111 12445443333 3323 358899999877653
No 373
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.97 E-value=7.4e-06 Score=85.27 Aligned_cols=58 Identities=28% Similarity=0.430 Sum_probs=41.2
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccc-ccc-------CceEEeeeEEEEEecCCeeEEEeeCCCcchhh
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVA-KEA-------GGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~-------~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~ 251 (708)
...++++|++|||||||+|+|.+..... .+. ..||++.....+ .++ .++||||...+.
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~~---~liDtPG~~~~~ 185 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HGG---LIADTPGFNEFG 185 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CCc---EEEeCCCccccC
Confidence 3589999999999999999998764321 222 247777655544 233 799999976654
No 374
>PRK12289 GTPase RsgA; Reviewed
Probab=97.94 E-value=1.6e-05 Score=86.82 Aligned_cols=86 Identities=23% Similarity=0.274 Sum_probs=58.3
Q ss_pred cccccccEEEEEEEccCCC-Chh-HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEe
Q 005218 256 RGAAVTDIVVLVVAADDGV-MPQ-TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~-~~q-~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vS 333 (708)
..+.++|.+++|+|+.++. .+. ....+..+...++|+|+|+||+||.+. +....... .+..+ .++++++|
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~--~~~~~~~~----~~~~~--g~~v~~iS 156 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP--TEQQQWQD----RLQQW--GYQPLFIS 156 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh--HHHHHHHH----HHHhc--CCeEEEEE
Confidence 4578999999999998643 222 133344445578999999999999632 22111111 11122 24789999
Q ss_pred eecCCCchhHHHHHHH
Q 005218 334 AVKKTGLDDLEVALLL 349 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~ 349 (708)
|++|.|+++|++.|..
T Consensus 157 A~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 157 VETGIGLEALLEQLRN 172 (352)
T ss_pred cCCCCCHHHHhhhhcc
Confidence 9999999999988864
No 375
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=97.92 E-value=5.9e-05 Score=64.79 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=61.9
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcccc--ceEEEE---ecccCCcccccCCCCcEEEeccCCCCCCCCe
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW--GRIRAI---RDMVGKSTDKARPAMPVEIEGLKGLPMAGDD 439 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~--~kVr~i---~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~ 439 (708)
.++|+++..+++.|.++.+++.+|+|++||.|...... .+|..+ ......+++++.||+.+.+.|++++ .+||+
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~-~~Gdt 80 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDT-ATGDT 80 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCC-ccCCE
Confidence 46789999999999999999999999999999876532 345454 4334567899999999999999885 78998
Q ss_pred EE
Q 005218 440 II 441 (708)
Q Consensus 440 ~~ 441 (708)
+.
T Consensus 81 l~ 82 (83)
T cd04088 81 LC 82 (83)
T ss_pred ee
Confidence 74
No 376
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=97.92 E-value=6.3e-05 Score=65.13 Aligned_cols=77 Identities=23% Similarity=0.315 Sum_probs=62.0
Q ss_pred cceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc-----cceEEEE---ecccCCcccccCCCCcEEEeccCCCCC
Q 005218 364 AQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE-----WGRIRAI---RDMVGKSTDKARPAMPVEIEGLKGLPM 435 (708)
Q Consensus 364 ~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~-----~~kVr~i---~~~~~~~v~~a~~g~~V~i~gl~~~~~ 435 (708)
+.+.|+++..+++.|.++.++|.+|+|++||.|.+... ..+|..+ ......+++++.+|+.+.+.|++++ .
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~-~ 79 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDI-T 79 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCC-c
Confidence 35789999999999999999999999999999976443 1345555 4444468899999999999999886 6
Q ss_pred CCCeEE
Q 005218 436 AGDDII 441 (708)
Q Consensus 436 ~Gd~~~ 441 (708)
+||++.
T Consensus 80 ~Gdtl~ 85 (86)
T cd03691 80 IGDTIC 85 (86)
T ss_pred ccceec
Confidence 898873
No 377
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.91 E-value=8e-05 Score=79.87 Aligned_cols=115 Identities=23% Similarity=0.359 Sum_probs=77.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccccc----c------cCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhh---
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAK----E------AGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSA--- 252 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~----~------~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~--- 252 (708)
-+++|.++|+.|.||||++|.|++.....+ . .+++........+.- +| ..++++||||.-++..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEE-DGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeec-CCeEEEEEEeccCCccccccccc
Confidence 357899999999999999999988754322 1 122223333333332 44 4678999999433211
Q ss_pred ---------------hhh------cc--c--ccccEEEEEEEcc-CCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCC
Q 005218 253 ---------------MRK------RG--A--AVTDIVVLVVAAD-DGVMPQTLEAIAHANAANVPIVVAINKCDKPAA 304 (708)
Q Consensus 253 ---------------~~~------~~--~--~~aDivllVvDa~-~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~ 304 (708)
... +. + ...+++||.+-.+ +++.+.+++.++.+.. .+.+|-|+-|.|....
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTD 177 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCCH
Confidence 000 11 1 3468999999765 5889999999888763 5779999999998653
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.89 E-value=5.6e-05 Score=79.87 Aligned_cols=97 Identities=22% Similarity=0.182 Sum_probs=56.1
Q ss_pred CCeeEEEeeCCCcchhhhhhh-------cc-----cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC
Q 005218 235 TGASITFLDTPGHAAFSAMRK-------RG-----AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~-------~~-----~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~ 302 (708)
.++.+.|+||||......... +. ...+|.+++|+|++.+ .++..........--+.-+++||+|..
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~~g~IlTKlDe~ 230 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGLTGIILTKLDGT 230 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCCCEEEEEccCCC
Confidence 568999999999644322111 11 1248999999999753 333333333222112467899999984
Q ss_pred CCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHH
Q 005218 303 AADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (708)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~ 345 (708)
.. .-......... ..|+.+++ +|+++++|..
T Consensus 231 ~~-~G~~l~~~~~~---------~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 231 AK-GGIILSIAYEL---------KLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CC-ccHHHHHHHHH---------CcCEEEEe--CCCChHhCcc
Confidence 32 22222222111 25888887 8999877643
No 379
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.88 E-value=2.1e-05 Score=83.75 Aligned_cols=100 Identities=21% Similarity=0.208 Sum_probs=67.1
Q ss_pred eCCCcch-hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchh
Q 005218 243 DTPGHAA-FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELE 321 (708)
Q Consensus 243 DTpG~~~-f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~ 321 (708)
--|||.. ........+..+|++|+|+|+.++...........+. ++|+++|+||+|+.+. ......+.. +.
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~--~~~~~~~~~----~~ 77 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP--EVTKKWIEY----FE 77 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH--HHHHHHHHH----HH
Confidence 3578754 2334456789999999999998766555444444332 7899999999999532 111111110 01
Q ss_pred ccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 322 DWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 322 ~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
.. ..+++++||+++.|+++|++.|...+.
T Consensus 78 ~~--~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 78 EQ--GIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred Hc--CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 11 247899999999999999999887654
No 380
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.86 E-value=0.00068 Score=76.68 Aligned_cols=178 Identities=16% Similarity=0.230 Sum_probs=125.6
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCC---------CCCHhhHHhHHhcCC--EEEEeCCCCCch----------
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVG---------SVTQSDVDLAQACGA--CIVGFNVKSPPT---------- 552 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG---------~it~sDv~~A~~~~a--~Il~Fnv~~~~~---------- 552 (708)
-|+-|..+=+.+.+..+..-++.+=|+++.-| +-|..-..+|...+- +|++.|= ++..
T Consensus 90 iDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNK-mD~~~~~~~~~~~~ 168 (447)
T PLN00043 90 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNK-MDATTPKYSKARYD 168 (447)
T ss_pred EECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEc-ccCCchhhhHHHHH
Confidence 69999999999999888888888889998877 345555666767664 3555553 3311
Q ss_pred ----hHHHHHHHcC-----CeEEEcc-----hh---------h---hhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEe
Q 005218 553 ----SVSQAATQAG-----IKILMHS-----II---------Y---HLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFEL 606 (708)
Q Consensus 553 ----~~~~~a~~~~-----V~i~~~~-----iI---------Y---~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~ 606 (708)
.++...++.| +.++.-+ .| | .|++.+ ....+|.....-.=+.-|..+|++
T Consensus 169 ~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l----~~i~~p~~~~~~plr~~I~~v~~~ 244 (447)
T PLN00043 169 EIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEAL----DQINEPKRPSDKPLRLPLQDVYKI 244 (447)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHH----hhcCCCccccCCCcEEEEEEEEEe
Confidence 1123334445 3222211 22 2 244433 333333332233344667789998
Q ss_pred CCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEE
Q 005218 607 KGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDII 684 (708)
Q Consensus 607 ~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~i 684 (708)
++.| +|+..+|..|.++.|+.+.+...|.. .+|.||+.++++|.++..|+.|||.|.+. .+++.||+|
T Consensus 245 ~g~G-------~vv~G~V~~G~l~~Gd~v~~~P~~~~---~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl 314 (447)
T PLN00043 245 GGIG-------TVPVGRVETGVIKPGMVVTFGPTGLT---TEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVA 314 (447)
T ss_pred CCcE-------EEEEEEEECCEEeeCCEEEEcCCCCE---EEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEE
Confidence 8776 78888999999999999999988764 69999999999999999999999999987 689999998
Q ss_pred EE
Q 005218 685 QC 686 (708)
Q Consensus 685 e~ 686 (708)
-.
T Consensus 315 ~~ 316 (447)
T PLN00043 315 SN 316 (447)
T ss_pred cc
Confidence 43
No 381
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.82 E-value=2.9e-05 Score=73.65 Aligned_cols=77 Identities=22% Similarity=0.198 Sum_probs=52.7
Q ss_pred hcccccccEEEEEEEccCCCChhHHHHHHHhhhc--CCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEE
Q 005218 255 KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAA--NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~--~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
.+.+..+|++++|+|+.++...+.......+... ++|+++|+||+|+... +... .... .+... ..+++++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~--~~~~-~~~~---~~~~~--~~~ii~i 77 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE--EQRK-AWAE---YFKKE--GIVVVFF 77 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH--HHHH-HHHH---HHHhc--CCeEEEE
Confidence 3567899999999999987776666666666554 8999999999999531 2211 1111 11111 1478999
Q ss_pred eeecCCC
Q 005218 333 SAVKKTG 339 (708)
Q Consensus 333 SAktg~G 339 (708)
||+++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9999875
No 382
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.82 E-value=0.00013 Score=62.67 Aligned_cols=75 Identities=12% Similarity=0.236 Sum_probs=63.3
Q ss_pred eEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--C
Q 005218 599 EVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--H 676 (708)
Q Consensus 599 ~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~ 676 (708)
-|..+|+.. + ++...+|..|.++.|..+.+...+.. .+|+||+.++++++++..|+.|++.|++. .
T Consensus 5 ~I~~v~~~~--g-------~vv~G~v~~G~i~~G~~v~i~P~~~~---~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~ 72 (82)
T cd04089 5 PIIDKYKDM--G-------TVVLGKVESGTIKKGDKLLVMPNKTQ---VEVLSIYNEDVEVRYARPGENVRLRLKGIEEE 72 (82)
T ss_pred EEEeEEEcC--C-------EEEEEEEeeeEEecCCEEEEeCCCcE---EEEEEEEECCEECCEECCCCEEEEEecCCCHH
Confidence 455677643 3 56666999999999999999998754 69999999999999999999999999964 5
Q ss_pred CCCCCCEEE
Q 005218 677 DFQVGDIIQ 685 (708)
Q Consensus 677 ~~~~gD~ie 685 (708)
+++.||+|-
T Consensus 73 ~v~~G~vl~ 81 (82)
T cd04089 73 DISPGFVLC 81 (82)
T ss_pred HCCCCCEEe
Confidence 899999873
No 383
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=97.82 E-value=0.00012 Score=63.49 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=60.0
Q ss_pred eEEEEEe---eCCCCcEEEEEEEeeEEcCCCEEEEcccc--ceEEEE---ecccCCcccccCCCCcEEEeccCCCCCCCC
Q 005218 367 YVVEARL---DKGRGPLTTAIVKAGTLVCGQHVVVGHEW--GRIRAI---RDMVGKSTDKARPAMPVEIEGLKGLPMAGD 438 (708)
Q Consensus 367 ~V~e~~~---~~~~G~v~~~~V~~G~L~~gd~v~~g~~~--~kVr~i---~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd 438 (708)
+++.+.. +++.|.++.+++.+|+|++||.|...... .+|..| ......+++++.+|+.+.+.|++++ .+||
T Consensus 2 ~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~-~~Gd 80 (85)
T cd03689 2 FVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNF-QIGD 80 (85)
T ss_pred EEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCc-cccC
Confidence 5778877 88899999999999999999999775422 344444 4445578899999999999999886 7999
Q ss_pred eEE
Q 005218 439 DII 441 (708)
Q Consensus 439 ~~~ 441 (708)
++.
T Consensus 81 tl~ 83 (85)
T cd03689 81 TLT 83 (85)
T ss_pred Eee
Confidence 985
No 384
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.80 E-value=0.0001 Score=64.65 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=65.5
Q ss_pred CCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEeccCCCC----
Q 005218 361 DGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP---- 434 (708)
Q Consensus 361 ~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~---- 434 (708)
+.|+..+|.+++...+.|.+++|++.+|.++.||.+++.|. ..+|++|+ .++..+++|.+|+.|.|. ++++.
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~-~~~~~~~~a~aG~~v~i~-l~~i~~~~v 79 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVE-MHHEPLEEALPGDNVGFN-VKNVSKKDI 79 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEE-ECCcCcCEECCCCEEEEE-ECCCCHHHc
Confidence 45888999999998899999999999999999999999984 56799998 457789999999999874 33321
Q ss_pred CCCCeEEE
Q 005218 435 MAGDDIIV 442 (708)
Q Consensus 435 ~~Gd~~~~ 442 (708)
..|+.+.-
T Consensus 80 ~~G~vl~~ 87 (91)
T cd03693 80 KRGDVAGD 87 (91)
T ss_pred CCcCEEcc
Confidence 46776554
No 385
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.80 E-value=7.4e-05 Score=65.01 Aligned_cols=78 Identities=17% Similarity=0.435 Sum_probs=65.1
Q ss_pred eEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--C
Q 005218 599 EVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--H 676 (708)
Q Consensus 599 ~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~ 676 (708)
.|..+|++++.| +|+-.+|..|.++.|..+.++..+.. ...+|.||+.+++++.++..|+.|++.|++. .
T Consensus 4 ~V~~v~~~~g~G-------~vv~G~v~~G~v~~gd~v~~~p~~~~-~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~ 75 (87)
T cd03697 4 PIEDVFSIPGRG-------TVVTGRIERGTIKVGDEVEIVGFGET-LKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKRE 75 (87)
T ss_pred eEEEEEeCCCcE-------EEEEEEECCCCCccCCEEEEeCCCCC-ceEEEEEEEECCcCCCEECCCCEEEEEECCCCHH
Confidence 466788887765 66667999999999999998864221 2479999999999999999999999999875 5
Q ss_pred CCCCCCEE
Q 005218 677 DFQVGDII 684 (708)
Q Consensus 677 ~~~~gD~i 684 (708)
+++.||+|
T Consensus 76 ~v~rG~vl 83 (87)
T cd03697 76 DVERGMVL 83 (87)
T ss_pred HcCCccEE
Confidence 89999987
No 386
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.78 E-value=0.00013 Score=62.94 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=60.6
Q ss_pred CcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEe--ccC--CCCCC
Q 005218 363 PAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIE--GLK--GLPMA 436 (708)
Q Consensus 363 p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~--~~~~~ 436 (708)
|+..+|.+++..+ .|++++|++.+|++++||.+.+.|. ..+|++|+ .++.++++|.||+.|.+. +++ ++ ..
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~-~~~~~~~~a~aGd~v~~~l~~~~~~~v-~~ 77 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIY-VDDEEVDYAVAGENVRLKLKGIDEEDI-SP 77 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEE-ECCeECCEECCCCEEEEEECCCCHHHC-CC
Confidence 5677889999887 8999999999999999999999885 35799998 456889999999999863 332 22 45
Q ss_pred CCeE
Q 005218 437 GDDI 440 (708)
Q Consensus 437 Gd~~ 440 (708)
|+.+
T Consensus 78 G~vl 81 (83)
T cd03698 78 GDVL 81 (83)
T ss_pred CCEE
Confidence 6654
No 387
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.77 E-value=0.00011 Score=63.89 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=55.5
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc------cceEEEEecccCCcccccCCCCcEEEe
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE------WGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~------~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
..+|.+++..++.|++++|++.+|.+++||.+.++|. ..+|++|+ .+++.+++|.||+.|.+.
T Consensus 2 ~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~-~~~~~~~~a~aGd~v~l~ 70 (87)
T cd03694 2 EFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIH-RNRSPVRVVRAGQSASLA 70 (87)
T ss_pred EEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEE-ECCeECCEECCCCEEEEE
Confidence 4578888888899999999999999999999999986 34799998 568899999999999884
No 388
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.76 E-value=0.00027 Score=74.19 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=92.5
Q ss_pred CCCCCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec---CCeeEEEeeCCCcchhhhhhhccc
Q 005218 182 GTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS---TGASITFLDTPGHAAFSAMRKRGA 258 (708)
Q Consensus 182 ~~~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~---~g~~v~liDTpG~~~f~~~~~~~~ 258 (708)
....++.+.+|.++|..++|||||+.+|-+.+- ..+|-...+....+... +-.++.+|=.-|......+....+
T Consensus 45 ~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al 121 (473)
T KOG3905|consen 45 TRSKLPSGKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFAL 121 (473)
T ss_pred ccccCCCCCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcc
Confidence 344678899999999999999999999987652 22333333333322211 123445554445433333333222
Q ss_pred c---cc-cEEEEEEEccCCCCh-----hHHH----H---------------------HHHh-------------------
Q 005218 259 A---VT-DIVVLVVAADDGVMP-----QTLE----A---------------------IAHA------------------- 285 (708)
Q Consensus 259 ~---~a-DivllVvDa~~g~~~-----q~~~----~---------------------l~~l------------------- 285 (708)
. -+ -++||++|.++++.- .|.. + |+..
T Consensus 122 ~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~ 201 (473)
T KOG3905|consen 122 PATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVG 201 (473)
T ss_pred cccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccccccc
Confidence 2 22 367888888875321 1100 0 1000
Q ss_pred -----------------hhcCCCEEEEEeCCCCCCCC-----c--c---hhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 286 -----------------NAANVPIVVAINKCDKPAAD-----P--E---RVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 286 -----------------~~~~~piIvViNK~Dl~~~~-----~--~---~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
...++|++||++|||.+..- . + -+...++...+ .+ ....|.+|+|...
T Consensus 202 ~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCL---r~--GaaLiyTSvKE~K 276 (473)
T KOG3905|consen 202 SSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCL---RY--GAALIYTSVKETK 276 (473)
T ss_pred CccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHH---Hc--CceeEEeeccccc
Confidence 01367999999999985311 0 0 01111221111 12 2468999999999
Q ss_pred CchhHHHHHHHHH
Q 005218 339 GLDDLEVALLLQA 351 (708)
Q Consensus 339 GI~~L~~~I~~~~ 351 (708)
|++-|...|....
T Consensus 277 NidllyKYivhr~ 289 (473)
T KOG3905|consen 277 NIDLLYKYIVHRS 289 (473)
T ss_pred chHHHHHHHHHHh
Confidence 9999999998754
No 389
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.75 E-value=0.00088 Score=75.45 Aligned_cols=181 Identities=19% Similarity=0.284 Sum_probs=116.6
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCC-----CCHhhHHhHHhcC-C-EEEEeCCCCCc-----h-------hH
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGS-----VTQSDVDLAQACG-A-CIVGFNVKSPP-----T-------SV 554 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~-----it~sDv~~A~~~~-a-~Il~Fnv~~~~-----~-------~~ 554 (708)
-|+-|.-+=+...+..+..-++-+=|+++.-|. -+...+.++...+ . +|+..| |.+. + .+
T Consensus 90 iDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviN-K~Dl~~~~~~~~~~~~~ei 168 (426)
T TIGR00483 90 VDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAIN-KMDSVNYDEEEFEAIKKEV 168 (426)
T ss_pred EECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEE-ChhccCccHHHHHHHHHHH
Confidence 488886555556666666667777788887772 2333445565554 2 344444 3332 1 11
Q ss_pred HHHHHHcC-----CeEEEc-----chhhhhH--------HHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCC
Q 005218 555 SQAATQAG-----IKILMH-----SIIYHLL--------DDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDD 616 (708)
Q Consensus 555 ~~~a~~~~-----V~i~~~-----~iIY~L~--------d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~ 616 (708)
.+.++..+ +.++.- .-|.++. ..+-+.+....+|.....-.=++.|..+|++++.|
T Consensus 169 ~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G------ 242 (426)
T TIGR00483 169 SNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVG------ 242 (426)
T ss_pred HHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCe------
Confidence 22333344 233221 1222211 12333444444443222222346778899988876
Q ss_pred ceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEE
Q 005218 617 VKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQ 685 (708)
Q Consensus 617 ~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie 685 (708)
+|+..+|..|.++.|+.+.+...+. ..+|+||+.+.+++.++..|+.|||.+.+. .+++.||+|-
T Consensus 243 -~vv~G~v~~G~i~~gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~ 309 (426)
T TIGR00483 243 -TVPVGRVETGVLKPGDKVVFEPAGV---SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCG 309 (426)
T ss_pred -EEEEEEEccceeecCCEEEECCCCc---EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEe
Confidence 7888899999999999999998875 369999999999999999999999999875 5899999984
No 390
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00013 Score=80.14 Aligned_cols=146 Identities=18% Similarity=0.136 Sum_probs=78.1
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcCcccc---cccCceEEeee------------------EEEEEe--------c-
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVA---KEAGGITQHMG------------------AFVVGM--------S- 234 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~---~~~~gtT~di~------------------~~~v~~--------~- 234 (708)
.+.++..++++|++|+||||++..|....... ....-+|.|.. ...+.. .
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~ 212 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE 212 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH
Confidence 46678899999999999999999986432110 01111121111 111110 0
Q ss_pred -CCeeEEEeeCCCcchhhhhh---hc---ccccccEEEEEEEccCCCChhHHHHHHHhhhcCC-------CEEEEEeCCC
Q 005218 235 -TGASITFLDTPGHAAFSAMR---KR---GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANV-------PIVVAINKCD 300 (708)
Q Consensus 235 -~g~~v~liDTpG~~~f~~~~---~~---~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~-------piIvViNK~D 300 (708)
.++.+.||||||........ .. .....+-.+||++++.+...-+.....+....+. +-=++++|.|
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 45789999999965332211 11 2234456799999987543222112222222122 2346779999
Q ss_pred CCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 301 KPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 301 l~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
-.. ..-.+...+... ..|+.+++ +|++|.+
T Consensus 293 Et~-~~G~~l~~~~~~---------~lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 293 EAS-NLGGVLDTVIRY---------KLPVHYVS--TGQKVPE 322 (374)
T ss_pred cCC-CccHHHHHHHHH---------CcCeEEEe--cCCCCCc
Confidence 743 222222222221 24666666 7888865
No 391
>PRK00098 GTPase RsgA; Reviewed
Probab=97.75 E-value=3.1e-05 Score=82.93 Aligned_cols=59 Identities=29% Similarity=0.438 Sum_probs=40.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccC-------ceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAG-------GITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~-------gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
.+..++++|++|+|||||+|+|++..... .+.+ .||++.....+. .+ ..++||||...+
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~--~~--~~~~DtpG~~~~ 229 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP--GG--GLLIDTPGFSSF 229 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC--CC--cEEEECCCcCcc
Confidence 46789999999999999999998765432 2222 356554433332 22 488999998754
No 392
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.75 E-value=0.00012 Score=73.89 Aligned_cols=112 Identities=20% Similarity=0.303 Sum_probs=72.3
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccc--------cccCceE-EeeeEEEEEecCCe--eEEEeeCCCcchh--------
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVA--------KEAGGIT-QHMGAFVVGMSTGA--SITFLDTPGHAAF-------- 250 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~--------~~~~gtT-~di~~~~v~~~~g~--~v~liDTpG~~~f-------- 250 (708)
++|.++|.+|.|||||+|.|....+.. ...+-|| .......+.- +|. +++++||||..++
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE-~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEE-KGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeee-cceEEEEEEecCCCcccccCccchhH
Confidence 689999999999999999997654422 1122222 2233333332 443 6789999994322
Q ss_pred ------------------hhhhhccc--ccccEEEEEEEccC-CCChhHHHHHHHhhhcCCCEEEEEeCCCCCC
Q 005218 251 ------------------SAMRKRGA--AVTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 251 ------------------~~~~~~~~--~~aDivllVvDa~~-g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~ 303 (708)
...+.+.+ -..+++++.+.++- .+.+-+++.++.+.+ -+.+|-|+-|.|...
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeeccccc
Confidence 11222223 24678888887763 566778888887764 356888999999864
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=97.74 E-value=5.2e-05 Score=81.22 Aligned_cols=84 Identities=30% Similarity=0.322 Sum_probs=55.7
Q ss_pred cccccEEEEEEEccCCCC-hhH-HHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeee
Q 005218 258 AAVTDIVVLVVAADDGVM-PQT-LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~~-~q~-~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
+.++|++++|+|+.++.. ... ...+..+...++|+++|+||+||.. +.+....... ....+ ..+++++||+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~-~~~~~~~~~~----~~~~~--g~~v~~vSA~ 150 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLD-DLEEARELLA----LYRAI--GYDVLELSAK 150 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCC-CHHHHHHHHH----HHHHC--CCeEEEEeCC
Confidence 589999999999976432 222 2333445567899999999999952 1111111111 11122 2589999999
Q ss_pred cCCCchhHHHHHH
Q 005218 336 KKTGLDDLEVALL 348 (708)
Q Consensus 336 tg~GI~~L~~~I~ 348 (708)
+|.|+++|++.|.
T Consensus 151 ~g~gi~~L~~~l~ 163 (298)
T PRK00098 151 EGEGLDELKPLLA 163 (298)
T ss_pred CCccHHHHHhhcc
Confidence 9999999988763
No 394
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.74 E-value=5.3e-05 Score=80.72 Aligned_cols=83 Identities=30% Similarity=0.347 Sum_probs=56.6
Q ss_pred cccccEEEEEEEccCCC-ChhHHH-HHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeee
Q 005218 258 AAVTDIVVLVVAADDGV-MPQTLE-AIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~-~~q~~~-~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
+.++|++++|+|+.++. .....+ .+..+...++|+++|+||+||.+.. ....... ....+ ..+++++||+
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~--~~~~~~~----~~~~~--g~~v~~vSA~ 147 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE--EEELELV----EALAL--GYPVLAVSAK 147 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH--HHHHHHH----HHHhC--CCeEEEEECC
Confidence 68999999999998765 333333 3344456789999999999996421 1111110 01111 3589999999
Q ss_pred cCCCchhHHHHHH
Q 005218 336 KKTGLDDLEVALL 348 (708)
Q Consensus 336 tg~GI~~L~~~I~ 348 (708)
+|.|+++|++.|.
T Consensus 148 ~g~gi~~L~~~L~ 160 (287)
T cd01854 148 TGEGLDELREYLK 160 (287)
T ss_pred CCccHHHHHhhhc
Confidence 9999999988764
No 395
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00018 Score=77.79 Aligned_cols=115 Identities=20% Similarity=0.323 Sum_probs=77.7
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCccccc-------ccCceEEeeeEEEEEec-CC--eeEEEeeCCCcchhh-------
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAK-------EAGGITQHMGAFVVGMS-TG--ASITFLDTPGHAAFS------- 251 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~-------~~~gtT~di~~~~v~~~-~g--~~v~liDTpG~~~f~------- 251 (708)
.+++.++|..|.|||||+|.|+..++... ..+.-|..+......+. +| ..++++||||..++.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 36899999999999999999987754321 11112333444433332 44 467889999943221
Q ss_pred -----------h-------hhhccc--ccccEEEEEEEcc-CCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCC
Q 005218 252 -----------A-------MRKRGA--AVTDIVVLVVAAD-DGVMPQTLEAIAHANAANVPIVVAINKCDKPAA 304 (708)
Q Consensus 252 -----------~-------~~~~~~--~~aDivllVvDa~-~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~ 304 (708)
. +....+ ...+++||.+..+ +|+.+.+.+.++.+. ..+.+|-|+-|.|....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh-ccccccceeeccccCCH
Confidence 0 011122 2678999999865 478999999888775 46789999999998653
No 396
>PRK12736 elongation factor Tu; Reviewed
Probab=97.72 E-value=0.0013 Score=73.44 Aligned_cols=183 Identities=16% Similarity=0.217 Sum_probs=122.0
Q ss_pred cccccHHHHHHHHHhCCCCceEEEEEEecCC--CCCHhhHHhHHhcCC--EEEEeCCCCCc----hhHHHHH-------H
Q 005218 495 DVQGTVQAVTDALKTLNSPQLFVNVVHVGVG--SVTQSDVDLAQACGA--CIVGFNVKSPP----TSVSQAA-------T 559 (708)
Q Consensus 495 d~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG--~it~sDv~~A~~~~a--~Il~Fnv~~~~----~~~~~~a-------~ 559 (708)
|+-|--+-+.+.+..+..-++-+=|+.+.-| +-|..=+.++...+- .|++.|= .+. +..+... +
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK-~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNK-VDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEe-cCCcchHHHHHHHHHHHHHHHH
Confidence 8899777778888877777777888887655 444445666666663 3456653 321 1111011 1
Q ss_pred HcC-----CeEEEcchh---------hhhHHHHHHHHhhcCC-CceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEE
Q 005218 560 QAG-----IKILMHSII---------YHLLDDFGNLVVDKAP-GTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRV 624 (708)
Q Consensus 560 ~~~-----V~i~~~~iI---------Y~L~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V 624 (708)
..+ +.|+.-+-. |+-++.+.+.+...++ |.....-.=++.|-.+|++++.| +|+..+|
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G-------~Vv~G~v 232 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRG-------TVVTGRV 232 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcE-------EEEEEEE
Confidence 122 445543332 2234555555555554 22222222356778899988876 7899999
Q ss_pred EecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEEE
Q 005218 625 IDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQC 686 (708)
Q Consensus 625 ~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie~ 686 (708)
.+|.++.|+.+.++..+.. ...+|.||+.++++|+++..|+.||+.+.+. .+++.||+|-.
T Consensus 233 ~~G~l~~gd~v~i~p~~~~-~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~ 295 (394)
T PRK12736 233 ERGTVKVGDEVEIVGIKET-QKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAK 295 (394)
T ss_pred eecEEecCCEEEEecCCCC-eEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEec
Confidence 9999999999988764321 2369999999999999999999999999875 58999999843
No 397
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.72 E-value=0.00025 Score=78.54 Aligned_cols=131 Identities=18% Similarity=0.301 Sum_probs=82.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc----------------cc---------------------------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA----------------KE--------------------------------- 218 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~----------------~~--------------------------------- 218 (708)
.-|+|+++|+..+||||.+..+.....-. ++
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 44789999999999999999985432110 00
Q ss_pred -----cCceEEeeeEEEEEe--cCCeeEEEeeCCCcc-------------hhhhhhhcccccccEEEEEE-EccCCC-Ch
Q 005218 219 -----AGGITQHMGAFVVGM--STGASITFLDTPGHA-------------AFSAMRKRGAAVTDIVVLVV-AADDGV-MP 276 (708)
Q Consensus 219 -----~~gtT~di~~~~v~~--~~g~~v~liDTpG~~-------------~f~~~~~~~~~~aDivllVv-Da~~g~-~~ 276 (708)
..|.|.......+.. ++-.++.++|.||.- ....+...++.+.+++|+|+ |.+-.. ..
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERS 466 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERS 466 (980)
T ss_pred HHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhh
Confidence 024443322222222 133578999999942 23345667889999999998 322111 11
Q ss_pred hHHHHHHHhhhcCCCEEEEEeCCCCCC---CCcchhhhhhhhccc
Q 005218 277 QTLEAIAHANAANVPIVVAINKCDKPA---ADPERVKNQLGAEGL 318 (708)
Q Consensus 277 q~~~~l~~l~~~~~piIvViNK~Dl~~---~~~~~~~~~l~~~~~ 318 (708)
..-++...+...+...|+|++|.|+.. ++|+++.+.+.-..+
T Consensus 467 nVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLF 511 (980)
T KOG0447|consen 467 IVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLF 511 (980)
T ss_pred hHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCcc
Confidence 223445566677888999999999964 467777777654433
No 398
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=97.71 E-value=0.00025 Score=60.70 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=59.1
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcccc--ceEEEE---ecccCCcccccCCCCcEEEeccCCCCCCCCe
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEW--GRIRAI---RDMVGKSTDKARPAMPVEIEGLKGLPMAGDD 439 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~--~kVr~i---~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~ 439 (708)
.+.++++..++. |.++.+++.+|+|++||.|...... .+|..| ......+++++.||+.+.+.|++ + .+||+
T Consensus 2 ~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~-~~Gdt 78 (81)
T cd04091 2 VGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-C-ASGDT 78 (81)
T ss_pred eEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-c-ccCCE
Confidence 467889988876 9999999999999999999876532 344444 43345688999999999999996 4 79998
Q ss_pred EE
Q 005218 440 II 441 (708)
Q Consensus 440 ~~ 441 (708)
+.
T Consensus 79 l~ 80 (81)
T cd04091 79 FT 80 (81)
T ss_pred ec
Confidence 74
No 399
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.70 E-value=3.4e-05 Score=85.37 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=47.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
-.+|++||-|||||||+||+|.+... .++..||-|.++.+..+. ..+.|.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls----~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS----PSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC----CCceecCCCCc
Confidence 47899999999999999999998775 569999999999887765 36889999994
No 400
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.70 E-value=0.00012 Score=81.70 Aligned_cols=113 Identities=16% Similarity=0.094 Sum_probs=64.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhh------cCcccc-cc---cC---------ceEEeeeEEEEEe---------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALR------QTSLVA-KE---AG---------GITQHMGAFVVGM--------------- 233 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~------~~~~~~-~~---~~---------gtT~di~~~~v~~--------------- 233 (708)
++..|+++|.+|+||||++..|. +.++.. +. .+ +.-.++..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45678999999999999999985 222211 11 00 0001111111110
Q ss_pred -cCCeeEEEeeCCCcchhhhh----hh--cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC
Q 005218 234 -STGASITFLDTPGHAAFSAM----RK--RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 234 -~~g~~v~liDTpG~~~f~~~----~~--~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~ 302 (708)
..++.+.|+||||.-..... .. ......|-++||+|++.|... ...+......--+.-+++||+|-.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 03679999999995432211 11 123457889999999865322 333333332223567899999974
No 401
>PRK14974 cell division protein FtsY; Provisional
Probab=97.68 E-value=0.00021 Score=77.54 Aligned_cols=97 Identities=23% Similarity=0.181 Sum_probs=55.6
Q ss_pred CCeeEEEeeCCCcchhhhh----hhc--ccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcch
Q 005218 235 TGASITFLDTPGHAAFSAM----RKR--GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER 308 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~----~~~--~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~ 308 (708)
.++.+.|+||||.-..... ... .....|.++||+|+..+. ...+.+......--.--+++||+|.... .-.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~giIlTKlD~~~~-~G~ 297 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGIDGVILTKVDADAK-GGA 297 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCCEEEEeeecCCCC-ccH
Confidence 4567999999996432211 111 123578999999997642 2333333322211235778999998431 112
Q ss_pred hhhhhhhcccchhccCCcceEEEEeeecCCCchhHHH
Q 005218 309 VKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (708)
Q Consensus 309 ~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~ 345 (708)
....... ...|+.+++ +|+++++|..
T Consensus 298 ~ls~~~~---------~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 298 ALSIAYV---------IGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred HHHHHHH---------HCcCEEEEe--CCCChhhccc
Confidence 2222111 135888887 8999988753
No 402
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.67 E-value=0.00011 Score=80.95 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=64.3
Q ss_pred cchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc--chhhhhhhhcccchhccC
Q 005218 247 HAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWG 324 (708)
Q Consensus 247 ~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~ 324 (708)
.++|..+.......+|++++|+|+.+.. ..+...+.... .+.|+++|+||+|+..... +...+.+.+. ....+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-~s~~~~l~~~~-~~~piilV~NK~DLl~k~~~~~~~~~~l~~~---~k~~g 124 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-GSLIPELKRFV-GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR---AKELG 124 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-CCccHHHHHHh-CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH---HHHcC
Confidence 4578888888888999999999997733 22333333222 2689999999999964321 1222211111 11111
Q ss_pred C-cceEEEEeeecCCCchhHHHHHHHH
Q 005218 325 G-KVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 325 ~-~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
- ...++++||++|.|+++|++.|...
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1 1258999999999999999998653
No 403
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.65 E-value=0.00021 Score=69.32 Aligned_cols=63 Identities=22% Similarity=0.147 Sum_probs=36.6
Q ss_pred CeeEEEeeCCCcchhhhhh--------hcccccccEEEEEEEccCCCCh--hHHHHHHHhhhcCCCEEEEEeCCCC
Q 005218 236 GASITFLDTPGHAAFSAMR--------KRGAAVTDIVVLVVAADDGVMP--QTLEAIAHANAANVPIVVAINKCDK 301 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~~~--------~~~~~~aDivllVvDa~~g~~~--q~~~~l~~l~~~~~piIvViNK~Dl 301 (708)
.....|+||||..+-.... ....-..|.+++++|+...... .......++... =++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 3567899999964322211 1234568999999998752111 011122333222 3679999996
No 404
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.64 E-value=5.7e-05 Score=80.48 Aligned_cols=59 Identities=27% Similarity=0.389 Sum_probs=40.8
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccc-c-------ccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVA-K-------EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~-~-------~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~ 251 (708)
+..++++|++|+|||||+|.|++..... . .-.+||++.....+. .+ ..++||||...|.
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~--~~--~~liDtPG~~~~~ 227 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP--GG--GLLIDTPGFREFG 227 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC--CC--CEEEECCCCCccC
Confidence 4789999999999999999998765422 1 112466665443332 12 3689999987764
No 405
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.63 E-value=4.5e-05 Score=80.48 Aligned_cols=61 Identities=25% Similarity=0.372 Sum_probs=41.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc-c---ccc----cCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-V---AKE----AGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~-~---~~~----~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~ 252 (708)
.+...+++|++|||||||+|+|..+.. . +++ -..||++...+.+.. +| .++||||.+.|.-
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-gG---~iiDTPGf~~~~l 231 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-GG---WIIDTPGFRSLGL 231 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-CC---EEEeCCCCCccCc
Confidence 455899999999999999999986432 1 122 235666655544421 33 5799999877653
No 406
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.63 E-value=0.0021 Score=71.65 Aligned_cols=180 Identities=18% Similarity=0.235 Sum_probs=113.6
Q ss_pred cccccHHHHHHHHHhCCCCceEEEEEEecCC--CCCHhhHHhHHhcCC-EE-EEeCCCCCc---h-h-------HHHHHH
Q 005218 495 DVQGTVQAVTDALKTLNSPQLFVNVVHVGVG--SVTQSDVDLAQACGA-CI-VGFNVKSPP---T-S-------VSQAAT 559 (708)
Q Consensus 495 d~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG--~it~sDv~~A~~~~a-~I-l~Fnv~~~~---~-~-------~~~~a~ 559 (708)
|+-|--+=+.+.+.....-++-+=|+.+.-| +-|..-+.++...+- .| +++| |.+. . . +++..+
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvN-K~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLN-KCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEE-ecccCCHHHHHHHHHHHHHHHHH
Confidence 8888766566666666656666777777665 333344555555553 23 5666 3432 1 1 011122
Q ss_pred HcC-----CeEEEcc---------hhhhhHHHHHHHHhhcCC-CceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEE
Q 005218 560 QAG-----IKILMHS---------IIYHLLDDFGNLVVDKAP-GTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRV 624 (708)
Q Consensus 560 ~~~-----V~i~~~~---------iIY~L~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V 624 (708)
..+ +.++.-+ -.|+-+..+-+.+.+..+ |.....-.=++-|-.+|++++.| +|+..+|
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G-------~Vv~G~v 232 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRG-------TVVTGRV 232 (394)
T ss_pred hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCce-------EEEEEEE
Confidence 222 4454322 223212222233333333 22222222345677899988876 8899999
Q ss_pred EecEEeeCCeEEEeeC--CeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEE
Q 005218 625 IDGCFTRSSTMRLLRS--GEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQ 685 (708)
Q Consensus 625 ~~G~i~~~~~~rv~R~--~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie 685 (708)
.+|.++.|+.+.++.- +. ..+|.||+.+++++.++..|+.|||.+.+. .+++.||+|-
T Consensus 233 ~~G~l~~gd~v~i~p~~~~~---~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 233 ERGIVKVGEEVEIVGLKDTR---KTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred EeeEEeCCCEEEEecCCCCc---EEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEe
Confidence 9999999999988763 33 369999999999999999999999999875 5799999983
No 407
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.62 E-value=7.2e-05 Score=78.49 Aligned_cols=60 Identities=27% Similarity=0.363 Sum_probs=47.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc------ccccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~------~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
...+++-++|-||+|||||+|++.... ......||+|+.+....... +...+.++||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCc
Confidence 356889999999999999999985422 23477899999987744333 7778999999994
No 408
>PRK01889 GTPase RsgA; Reviewed
Probab=97.60 E-value=0.00023 Score=78.15 Aligned_cols=83 Identities=27% Similarity=0.254 Sum_probs=59.6
Q ss_pred cccccEEEEEEEccCCCChhHH-HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeec
Q 005218 258 AAVTDIVVLVVAADDGVMPQTL-EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~~~q~~-~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
+.+.|.+++|+++..+.....+ ..+..+...++|.++|+||+||.+. .+...+.+... ....+++++||++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~~~~~~~~~~~-------~~g~~Vi~vSa~~ 181 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-AEEKIAEVEAL-------APGVPVLAVSALD 181 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-HHHHHHHHHHh-------CCCCcEEEEECCC
Confidence 5789999999999766665333 4455566789999999999999642 11222222221 2246899999999
Q ss_pred CCCchhHHHHHH
Q 005218 337 KTGLDDLEVALL 348 (708)
Q Consensus 337 g~GI~~L~~~I~ 348 (708)
|.|+++|.++|.
T Consensus 182 g~gl~~L~~~L~ 193 (356)
T PRK01889 182 GEGLDVLAAWLS 193 (356)
T ss_pred CccHHHHHHHhh
Confidence 999999998874
No 409
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=97.59 E-value=0.0003 Score=58.87 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=58.9
Q ss_pred eEEEEEEEecEEeeCCeEEEeeCC--eEEEEEEEeeeeccccccceeccCCeEEEEEcc--cCC-CCCCCEE
Q 005218 618 KIAGCRVIDGCFTRSSTMRLLRSG--EVVFEGSCISLKREKQDVDTVAKGNECGLVIRD--WHD-FQVGDII 684 (708)
Q Consensus 618 ~iaGc~V~~G~i~~~~~~rv~R~~--~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~--~~~-~~~gD~i 684 (708)
.|+.++|.+|.|++|+.+++++++ +--...+|.+|..++.++.+...|..||+.+.. .++ ++.||+|
T Consensus 2 ~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl 73 (74)
T PF03144_consen 2 RVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTL 73 (74)
T ss_dssp EEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEE
T ss_pred EEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEE
Confidence 689999999999999999997732 323568999999999999999999999998875 678 8999987
No 410
>PLN03126 Elongation factor Tu; Provisional
Probab=97.59 E-value=0.00041 Score=78.99 Aligned_cols=106 Identities=23% Similarity=0.338 Sum_probs=80.7
Q ss_pred hhhhhHHHHHHHHhhcCC-CceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEE
Q 005218 570 IIYHLLDDFGNLVVDKAP-GTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGS 648 (708)
Q Consensus 570 iIY~L~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~ 648 (708)
-|..|++.+.++ .+ |.......=+.-|..+|++++.| +|+..+|..|.++.|+.+.+...++. ...+
T Consensus 267 ~i~~Ll~~l~~~----~~~p~r~~~~p~r~~I~~vf~v~g~G-------tVv~G~V~sG~i~~Gd~v~i~p~~~~-~~~~ 334 (478)
T PLN03126 267 KIYELMDAVDSY----IPIPQRQTDLPFLLAVEDVFSITGRG-------TVATGRVERGTVKVGETVDIVGLRET-RSTT 334 (478)
T ss_pred hHHHHHHHHHHh----CCCCCCccccceeeEEEEEEEeCCce-------EEEEEEEEcCeEecCCEEEEecCCCc-eEEE
Confidence 345566655542 22 22222223346788899998877 78888999999999999999876543 3479
Q ss_pred EeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEEEE
Q 005218 649 CISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQCL 687 (708)
Q Consensus 649 i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie~y 687 (708)
|.||+.++++++++..|+.|||.|.+. .+++.||+|-.-
T Consensus 335 VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~ 375 (478)
T PLN03126 335 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP 375 (478)
T ss_pred EEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecC
Confidence 999999999999999999999999875 479999998543
No 411
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.59 E-value=0.00056 Score=77.06 Aligned_cols=161 Identities=14% Similarity=0.159 Sum_probs=92.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
++-..+-++|+.|+|||.|+++++++.+..+..+.+...+....+... ....+.|-|.+-. ....+.... ..||++.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 345678999999999999999999988766444433333333332221 3344555565543 222222222 7899999
Q ss_pred EEEEccCCCChhHHHHH-HH-hhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 266 LVVAADDGVMPQTLEAI-AH-ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~l-~~-l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
++||.++.....-...+ .. -.....|+++|..|+|+.....+ ..-+..+.. .++ +-.+.+.+|.++ .+=.++
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~-~~iqpde~~---~~~-~i~~P~~~S~~~-~~s~~l 574 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQR-YSIQPDEFC---RQL-GLPPPIHISSKT-LSSNEL 574 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhc-cCCChHHHH---Hhc-CCCCCeeeccCC-CCCchH
Confidence 99999975443332222 11 11368899999999999543211 100001100 011 112456677775 222788
Q ss_pred HHHHHHHHHHcc
Q 005218 344 EVALLLQAEMMN 355 (708)
Q Consensus 344 ~~~I~~~~~~~~ 355 (708)
+..|...+..+.
T Consensus 575 f~kL~~~A~~Ph 586 (625)
T KOG1707|consen 575 FIKLATMAQYPH 586 (625)
T ss_pred HHHHHHhhhCCC
Confidence 888887665443
No 412
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.58 E-value=0.0023 Score=72.49 Aligned_cols=178 Identities=16% Similarity=0.232 Sum_probs=125.7
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCC---------CCHhhHHhHHhcCC--EEEEeCCCCCc-------h---
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGS---------VTQSDVDLAQACGA--CIVGFNVKSPP-------T--- 552 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~---------it~sDv~~A~~~~a--~Il~Fnv~~~~-------~--- 552 (708)
-|+-|..+=+.+.+..+..-++.+=|+.+.-|. -|..=+.+|...|- +|++.|= .+. +
T Consensus 90 IDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNK-mD~~~~~~~~~~~~ 168 (446)
T PTZ00141 90 IDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINK-MDDKTVNYSQERYD 168 (446)
T ss_pred EECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEc-cccccchhhHHHHH
Confidence 588898887888888888778888899988773 56666777777773 4567764 341 1
Q ss_pred -hHHHHH---HHcC-----CeEEEcc-----hhh------------hhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEe
Q 005218 553 -SVSQAA---TQAG-----IKILMHS-----IIY------------HLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFEL 606 (708)
Q Consensus 553 -~~~~~a---~~~~-----V~i~~~~-----iIY------------~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~ 606 (708)
+.+++. +..| +.++.-+ -|. .|++. +....+|.....-.=+.-|..+|++
T Consensus 169 ~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~----l~~~~~~~~~~~~p~r~~I~~v~~v 244 (446)
T PTZ00141 169 EIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEA----LDTLEPPKRPVDKPLRLPLQDVYKI 244 (446)
T ss_pred HHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHH----HhCCCCCCcCCCCCeEEEEEEEEec
Confidence 112222 1222 3333332 222 24444 3443344332222344678889998
Q ss_pred CCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEE
Q 005218 607 KGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDII 684 (708)
Q Consensus 607 ~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~i 684 (708)
++.| +|+..+|..|.++.|..+.++..+.. .+|.||+.++++++++..|+.|||.|.+. .+++.||+|
T Consensus 245 ~g~G-------tvv~G~V~~G~l~~Gd~v~i~P~~~~---~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl 314 (446)
T PTZ00141 245 GGIG-------TVPVGRVETGILKPGMVVTFAPSGVT---TEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVA 314 (446)
T ss_pred CCce-------EEEEEEEEcceEecCCEEEEccCCcE---EEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEE
Confidence 8776 78888999999999999999998754 69999999999999999999999999985 589999998
Q ss_pred EE
Q 005218 685 QC 686 (708)
Q Consensus 685 e~ 686 (708)
-.
T Consensus 315 ~~ 316 (446)
T PTZ00141 315 SD 316 (446)
T ss_pred ec
Confidence 54
No 413
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.57 E-value=0.00033 Score=76.52 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=60.9
Q ss_pred EEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC-----------CChhHHHHHHHhhh----
Q 005218 223 TQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-----------VMPQTLEAIAHANA---- 287 (708)
Q Consensus 223 T~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g-----------~~~q~~~~l~~l~~---- 287 (708)
|..+....+.+ ++..+.+||.+|++.....|..++..++++++|+|.++- ...+.+..+..+..
T Consensus 171 T~Gi~~~~f~~-~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 171 TTGIQETAFIV-KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred ccceEEEEEEE-CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 33455555666 889999999999999999999999999999999999862 12334444444432
Q ss_pred cCCCEEEEEeCCCCC
Q 005218 288 ANVPIVVAINKCDKP 302 (708)
Q Consensus 288 ~~~piIvViNK~Dl~ 302 (708)
.++|+++++||.|+.
T Consensus 250 ~~~piil~~NK~D~~ 264 (342)
T smart00275 250 ANTSIILFLNKIDLF 264 (342)
T ss_pred cCCcEEEEEecHHhH
Confidence 478999999999985
No 414
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=97.57 E-value=0.00049 Score=59.67 Aligned_cols=76 Identities=22% Similarity=0.211 Sum_probs=58.8
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEe--cccCCcccccCCCCcEEEe-cc---CCCCCC
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIR--DMVGKSTDKARPAMPVEIE-GL---KGLPMA 436 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~--~~~~~~v~~a~~g~~V~i~-gl---~~~~~~ 436 (708)
.+.|+++..+++.|.++.+++.+|+|++|+.+..... ..+|..|. .....++.++.+|+.+.+. |+ +++ .+
T Consensus 2 ~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~~g~~~l~~~-~~ 80 (86)
T cd03699 2 RALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYIIAGIKTVKDA-RV 80 (86)
T ss_pred EEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEEccccccCcc-cc
Confidence 5688999999999999999999999999999977542 23444443 3344688999999999996 54 444 58
Q ss_pred CCeEE
Q 005218 437 GDDII 441 (708)
Q Consensus 437 Gd~~~ 441 (708)
||++.
T Consensus 81 Gdtl~ 85 (86)
T cd03699 81 GDTIT 85 (86)
T ss_pred ccEee
Confidence 99874
No 415
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.56 E-value=0.0002 Score=77.45 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=60.3
Q ss_pred EEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC-----------CChhHHHHHHHhhh----
Q 005218 223 TQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-----------VMPQTLEAIAHANA---- 287 (708)
Q Consensus 223 T~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g-----------~~~q~~~~l~~l~~---- 287 (708)
|..+....+.+ ++..+.+||++|++.....|..++..++++++|+|.++- ...+.+..+..+..
T Consensus 148 T~Gi~~~~f~~-~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 148 TTGIVETKFTI-KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred cCCeeEEEEEe-cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 34455555666 789999999999999999999999999999999999862 12233444443332
Q ss_pred cCCCEEEEEeCCCCC
Q 005218 288 ANVPIVVAINKCDKP 302 (708)
Q Consensus 288 ~~~piIvViNK~Dl~ 302 (708)
.++|+++++||.|+.
T Consensus 227 ~~~pill~~NK~D~f 241 (317)
T cd00066 227 ANTSIILFLNKKDLF 241 (317)
T ss_pred cCCCEEEEccChHHH
Confidence 478999999999974
No 416
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.56 E-value=0.0023 Score=75.19 Aligned_cols=177 Identities=18% Similarity=0.183 Sum_probs=117.8
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCC--CCHhhHHhHHhcCC--EEEEeCCCCCch---h----HHHH---HH
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGS--VTQSDVDLAQACGA--CIVGFNVKSPPT---S----VSQA---AT 559 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~--it~sDv~~A~~~~a--~Il~Fnv~~~~~---~----~~~~---a~ 559 (708)
-|+-|--.-+...+..+..-++-+=|+.+.-|. -|..-+..+...+. .|+..|= ++.. . ..++ .+
T Consensus 56 IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNK-iDlv~~~~~~~v~~ei~~~l~ 134 (614)
T PRK10512 56 IDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTK-ADRVDEARIAEVRRQVKAVLR 134 (614)
T ss_pred EECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEC-CccCCHHHHHHHHHHHHHHHH
Confidence 488887666677777777666777777776663 33333445555553 3566664 3321 1 0111 11
Q ss_pred HcC---CeEEEc-----chhhhhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEee
Q 005218 560 QAG---IKILMH-----SIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTR 631 (708)
Q Consensus 560 ~~~---V~i~~~-----~iIY~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~ 631 (708)
..+ +.|+.- .-|.+|++.+.++. ++.....-.-+.-|-.+|++++.| +|+..+|.+|+++.
T Consensus 135 ~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~----~~~~~~~~~~rl~Id~vf~v~G~G-------tVvtGtv~sG~l~~ 203 (614)
T PRK10512 135 EYGFAEAKLFVTAATEGRGIDALREHLLQLP----EREHAAQHRFRLAIDRAFTVKGAG-------LVVTGTALSGEVKV 203 (614)
T ss_pred hcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh----ccccCcCCCceEEEEEEeccCCCe-------EEEEEEEecceEec
Confidence 122 444432 34556666655443 322211112346677899998877 89999999999999
Q ss_pred CCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcc---cCCCCCCCEEE
Q 005218 632 SSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRD---WHDFQVGDIIQ 685 (708)
Q Consensus 632 ~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~---~~~~~~gD~ie 685 (708)
|+.+.+...+.. .+|.||+.++++|.++..|+.|||.+.+ ..+++.||++-
T Consensus 204 Gd~v~i~p~~~~---~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~ 257 (614)
T PRK10512 204 GDTLWLTGVNKP---MRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLL 257 (614)
T ss_pred CCEEEEcCCCCc---EEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEe
Confidence 999988876654 5999999999999999999999999985 35899999984
No 417
>PLN03127 Elongation factor Tu; Provisional
Probab=97.56 E-value=0.0024 Score=72.32 Aligned_cols=178 Identities=21% Similarity=0.270 Sum_probs=113.5
Q ss_pred cccccHHHHHHHHHhCCCCceEEEEEEecCC--CCCHhhHHhHHhcCCE--EEEeCCCCCc----hhHHHHH-------H
Q 005218 495 DVQGTVQAVTDALKTLNSPQLFVNVVHVGVG--SVTQSDVDLAQACGAC--IVGFNVKSPP----TSVSQAA-------T 559 (708)
Q Consensus 495 d~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG--~it~sDv~~A~~~~a~--Il~Fnv~~~~----~~~~~~a-------~ 559 (708)
|+-|--.=+.+.+..+..-++-+=|+.+.-| +-|..=+.++...+-. |+..|= ++. ...+... +
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNK-iDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNK-VDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEe-eccCCHHHHHHHHHHHHHHHHH
Confidence 7777655556666665556677778887655 3333445555556643 445552 221 1111111 1
Q ss_pred H-----cCCeEEEcc---------------hhhhhHHHHHHHHhhcCC-CceeeeeeeceeEeeEEEeCCCCCCCCCCce
Q 005218 560 Q-----AGIKILMHS---------------IIYHLLDDFGNLVVDKAP-GTFETQVAGEAEVLNIFELKGRSKAKGDDVK 618 (708)
Q Consensus 560 ~-----~~V~i~~~~---------------iIY~L~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~ 618 (708)
. ..+.++.-+ .+..|++. +.+.+| |.....-.=+..|..+|++++.| +
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~----l~~~lp~p~r~~~~pfr~~I~~vf~v~g~G-------t 277 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDA----VDEYIPEPVRVLDKPFLMPIEDVFSIQGRG-------T 277 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHH----HHHhCCCCCcccccceEeeEEEEEEcCCce-------E
Confidence 1 135553211 13344444 444443 22222222345688899998876 8
Q ss_pred EEEEEEEecEEeeCCeEEEee---CCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEEE
Q 005218 619 IAGCRVIDGCFTRSSTMRLLR---SGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQC 686 (708)
Q Consensus 619 iaGc~V~~G~i~~~~~~rv~R---~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie~ 686 (708)
|+..+|.+|.++.|..+.++- +|. ...+|.||+.++++|.++..|+.||+.+.+. .+++.||+|-.
T Consensus 278 VvtG~v~~G~i~~Gd~v~i~p~~~~g~--~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~ 348 (447)
T PLN03127 278 VATGRVEQGTIKVGEEVEIVGLRPGGP--LKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICK 348 (447)
T ss_pred EEEEEEEccEEecCCEEEEcccCCCCc--EEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEec
Confidence 888899999999999998884 232 2479999999999999999999999999875 58999999855
No 418
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.55 E-value=0.00021 Score=71.86 Aligned_cols=95 Identities=24% Similarity=0.277 Sum_probs=52.3
Q ss_pred CCeeEEEeeCCCcchhhhh----hhc--ccccccEEEEEEEccCCCChhHHHHH-HHhhhcCCCEEEEEeCCCCCCCCcc
Q 005218 235 TGASITFLDTPGHAAFSAM----RKR--GAAVTDIVVLVVAADDGVMPQTLEAI-AHANAANVPIVVAINKCDKPAADPE 307 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~----~~~--~~~~aDivllVvDa~~g~~~q~~~~l-~~l~~~~~piIvViNK~Dl~~~~~~ 307 (708)
+++.+.|+||||....... ... .....+-++||+|++.+. +..+.+ .+....+.. =++++|.|-... .-
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~~~-~lIlTKlDet~~-~G 157 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALAFYEAFGID-GLILTKLDETAR-LG 157 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHHHHHHSSTC-EEEEESTTSSST-TH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHHHhhcccCc-eEEEEeecCCCC-cc
Confidence 4577999999995443221 111 123577899999998742 333333 333333444 456999997432 22
Q ss_pred hhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 308 RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
.+...+... ..|+-.+| +|+++++|.
T Consensus 158 ~~l~~~~~~---------~~Pi~~it--~Gq~V~Dl~ 183 (196)
T PF00448_consen 158 ALLSLAYES---------GLPISYIT--TGQRVDDLE 183 (196)
T ss_dssp HHHHHHHHH---------TSEEEEEE--SSSSTTGEE
T ss_pred cceeHHHHh---------CCCeEEEE--CCCChhcCc
Confidence 222222211 24666666 788886653
No 419
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.55 E-value=0.00038 Score=59.90 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=54.9
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEe
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
..+|.+++..++.|.+++|++.+|++++|+.+.+.|. .++|++|+ .+++.+++|.||+.|.+.
T Consensus 2 r~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~-~~~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 2 RLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQ-VHGKDVEEAKAGDRVALN 66 (83)
T ss_pred EEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEE-ECCcCcCEEcCCCEEEEE
Confidence 4577888888889999999999999999999999874 46799998 457889999999999884
No 420
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.54 E-value=0.00042 Score=59.57 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=53.4
Q ss_pred CcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEe
Q 005218 363 PAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 363 p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
|+..+|.+++.. .|++++|++.+|++++||.+.+.|. ..+|++|+. +++.+++|.||+.|.+.
T Consensus 1 plr~~I~~v~~~--~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~-~~~~~~~a~aGd~v~l~ 65 (82)
T cd04089 1 PLRLPIIDKYKD--MGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYN-EDVEVRYARPGENVRLR 65 (82)
T ss_pred CeEEEEEeEEEc--CCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEE-CCEECCEECCCCEEEEE
Confidence 567788888864 3899999999999999999999885 457999984 56889999999999874
No 421
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.53 E-value=0.0024 Score=71.87 Aligned_cols=181 Identities=20% Similarity=0.264 Sum_probs=115.1
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEec----CCCCCHhhHHhHHhcCC--EEEEeCCCCCch------------hHH
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVG----VGSVTQSDVDLAQACGA--CIVGFNVKSPPT------------SVS 555 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~----VG~it~sDv~~A~~~~a--~Il~Fnv~~~~~------------~~~ 555 (708)
-|+-|.-+=+...+..+..-++-+=|+.+. +.+-+...+.++...+. +|+..|= .+.. .+.
T Consensus 89 iDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK-~Dl~~~~~~~~~~~~~~i~ 167 (425)
T PRK12317 89 VDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINK-MDAVNYDEKRYEEVKEEVS 167 (425)
T ss_pred EECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEc-cccccccHHHHHHHHHHHH
Confidence 588885333344445455556667777764 44556667777777763 4555553 3321 011
Q ss_pred HHHHHcC-----CeEEEcc-----hhhhhH--------HHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCc
Q 005218 556 QAATQAG-----IKILMHS-----IIYHLL--------DDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDV 617 (708)
Q Consensus 556 ~~a~~~~-----V~i~~~~-----iIY~L~--------d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~ 617 (708)
+..+..+ +.++.-+ -|-++. ..+.+.|....+|.....-.=+..|..+|.+++.|
T Consensus 168 ~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G------- 240 (425)
T PRK12317 168 KLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVG------- 240 (425)
T ss_pred HHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCe-------
Confidence 2222233 2333211 222211 12334444443332222222346788899988876
Q ss_pred eEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcccC--CCCCCCEEE
Q 005218 618 KIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWH--DFQVGDIIQ 685 (708)
Q Consensus 618 ~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~~--~~~~gD~ie 685 (708)
+|+..+|..|.++.|..+.++..+.. .+|.||+.+.++|+++..|+.||+.+.+.+ ++..||++-
T Consensus 241 ~vv~G~v~~G~v~~Gd~v~i~P~~~~---~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~ 307 (425)
T PRK12317 241 TVPVGRVETGVLKVGDKVVFMPAGVV---GEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCG 307 (425)
T ss_pred EEEEEEEeeccEecCCEEEECCCCCe---EEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEec
Confidence 78888999999999999999987764 699999999999999999999999998764 789999883
No 422
>PRK00049 elongation factor Tu; Reviewed
Probab=97.53 E-value=0.0039 Score=69.55 Aligned_cols=182 Identities=15% Similarity=0.195 Sum_probs=111.9
Q ss_pred cccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhh---HHhHHhcCCE-E-EEeCCCCCc----hhHH----HHHH--
Q 005218 495 DVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSD---VDLAQACGAC-I-VGFNVKSPP----TSVS----QAAT-- 559 (708)
Q Consensus 495 d~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sD---v~~A~~~~a~-I-l~Fnv~~~~----~~~~----~~a~-- 559 (708)
|+-|--+=+.+.+..+..-++-+=|+.+.-| ++..+ +.++...+-. | +++|= .+. +..+ ++.+
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g-~~~qt~~~~~~~~~~g~p~iiVvvNK-~D~~~~~~~~~~~~~~i~~~l 158 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFLNK-CDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCC-CchHHHHHHHHHHHcCCCEEEEEEee-cCCcchHHHHHHHHHHHHHHH
Confidence 7777655556666666666666667776655 23333 4455555533 3 34443 321 1100 1111
Q ss_pred -H-----cCCeEEEcchh-----------hhhHHHHHHHHhhcCC-CceeeeeeeceeEeeEEEeCCCCCCCCCCceEEE
Q 005218 560 -Q-----AGIKILMHSII-----------YHLLDDFGNLVVDKAP-GTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAG 621 (708)
Q Consensus 560 -~-----~~V~i~~~~iI-----------Y~L~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaG 621 (708)
. .++.++.-+-. |+-++.+.+.+.+.++ |.....-.=++.|..+|++++.| +|+.
T Consensus 159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G-------~Vv~ 231 (396)
T PRK00049 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRG-------TVVT 231 (396)
T ss_pred HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCce-------EEEE
Confidence 1 12334322211 3223344444454443 22222222346688899998876 8899
Q ss_pred EEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEEE
Q 005218 622 CRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQC 686 (708)
Q Consensus 622 c~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie~ 686 (708)
.+|..|.++.|+.+.++--+.. ...+|.||+.+.++|.++..|+.||+.+.+. .+++.||++-.
T Consensus 232 G~v~~G~i~~gd~v~i~p~~~~-~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~ 297 (396)
T PRK00049 232 GRVERGIIKVGEEVEIVGIRDT-QKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAK 297 (396)
T ss_pred EEEeeeEEecCCEEEEeecCCC-ceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEec
Confidence 9999999999999988753211 2369999999999999999999999999886 58999998854
No 423
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.53 E-value=0.0011 Score=75.04 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=51.7
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec---CCeeEEEeeCCCcchhhhhhhccccc--
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS---TGASITFLDTPGHAAFSAMRKRGAAV-- 260 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~---~g~~v~liDTpG~~~f~~~~~~~~~~-- 260 (708)
......|.|+|..++|||||+.+|.+.+ ...+|...++.+..+.-. +-.++.+|-..|-..+..+..-.+..
T Consensus 22 ~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~ 98 (472)
T PF05783_consen 22 LPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN 98 (472)
T ss_pred CCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence 3456789999999999999999997543 233444444444433221 11345666665644455444433321
Q ss_pred --ccEEEEEEEccCCC
Q 005218 261 --TDIVVLVVAADDGV 274 (708)
Q Consensus 261 --aDivllVvDa~~g~ 274 (708)
--++|+|+|.+.++
T Consensus 99 l~~t~vvIvlDlS~PW 114 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKPW 114 (472)
T ss_pred ccceEEEEEecCCChH
Confidence 23677888988754
No 424
>PRK12735 elongation factor Tu; Reviewed
Probab=97.53 E-value=0.005 Score=68.73 Aligned_cols=183 Identities=17% Similarity=0.215 Sum_probs=114.2
Q ss_pred cccccHHHHHHHHHhCCCCceEEEEEEecCCCCC--HhhHHhHHhcCCE-E-EEeCCCCCch----h-------HHHHHH
Q 005218 495 DVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVT--QSDVDLAQACGAC-I-VGFNVKSPPT----S-------VSQAAT 559 (708)
Q Consensus 495 d~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it--~sDv~~A~~~~a~-I-l~Fnv~~~~~----~-------~~~~a~ 559 (708)
|+-|--+=+.+.+..+..-++-+=|+.+.-|.-. ..=+.++...+-. | +.+| |.+.. . ++.+.+
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvN-K~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLN-KCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEE-ecCCcchHHHHHHHHHHHHHHHH
Confidence 7778655566666666666677777777665422 2223444444432 3 4555 33321 0 011111
Q ss_pred Hc-----CCeEEEcchhh-----------hhHHHHHHHHhhcCC-CceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEE
Q 005218 560 QA-----GIKILMHSIIY-----------HLLDDFGNLVVDKAP-GTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGC 622 (708)
Q Consensus 560 ~~-----~V~i~~~~iIY-----------~L~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc 622 (708)
.. ++.++.-+-.. +=++.+.+.+...++ |.....-.=++.|..+|++++.| +|+..
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G-------tvv~G 232 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRG-------TVVTG 232 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCce-------EEEEE
Confidence 11 13333332221 123444444454444 32222222345688899988876 78888
Q ss_pred EEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEEE
Q 005218 623 RVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQC 686 (708)
Q Consensus 623 ~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie~ 686 (708)
+|.+|.++.|..+.++..+.. ...+|.||+.++++|+++..|+.||+.+.+. ++++.||++-.
T Consensus 233 ~v~~G~i~~gd~v~i~p~~~~-~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~ 297 (396)
T PRK12735 233 RVERGIVKVGDEVEIVGIKET-QKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAK 297 (396)
T ss_pred EEEecEEeCCCEEEEecCCCC-eEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEc
Confidence 999999999999999975421 2369999999999999999999999999875 58999999854
No 425
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00065 Score=77.14 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=77.7
Q ss_pred CCCCCCCEEEEEecCCCCchHHHHHhhcC--------cccc-c-ccCce-----------EEeeeEEEEEe---------
Q 005218 184 EILPRPPVVTVMGHVDHGKTSLLDALRQT--------SLVA-K-EAGGI-----------TQHMGAFVVGM--------- 233 (708)
Q Consensus 184 ~~~~~~~~V~IvG~~nvGKSSLln~L~~~--------~~~~-~-~~~gt-----------T~di~~~~v~~--------- 233 (708)
+.+.++..|+|+|++|+||||++..|... .+.. + +.-.+ ...+.......
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~ 424 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE 424 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH
Confidence 45667899999999999999999888532 1111 1 00000 00000111000
Q ss_pred -cCCeeEEEeeCCCcchhhhhhh------cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc
Q 005218 234 -STGASITFLDTPGHAAFSAMRK------RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP 306 (708)
Q Consensus 234 -~~g~~v~liDTpG~~~f~~~~~------~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~ 306 (708)
..++.+.||||||......... .... ....++|++++.+ ..++.+.++.+... .+.-+++||+|... ..
T Consensus 425 ~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss-~~Dl~eii~~f~~~-~~~gvILTKlDEt~-~l 500 (559)
T PRK12727 425 RLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH-FSDLDEVVRRFAHA-KPQGVVLTKLDETG-RF 500 (559)
T ss_pred HhccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC-hhHHHHHHHHHHhh-CCeEEEEecCcCcc-ch
Confidence 0357899999999643221111 1111 2346777887653 22333444444332 46779999999843 22
Q ss_pred chhhhhhhhcccchhccCCcceEEEEeeecCCCc-hhH
Q 005218 307 ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL-DDL 343 (708)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI-~~L 343 (708)
-.+...+... ..|+.+++ +|+++ ++|
T Consensus 501 G~aLsv~~~~---------~LPI~yvt--~GQ~VPeDL 527 (559)
T PRK12727 501 GSALSVVVDH---------QMPITWVT--DGQRVPDDL 527 (559)
T ss_pred hHHHHHHHHh---------CCCEEEEe--CCCCchhhh
Confidence 2222222221 24666665 68888 444
No 426
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.48 E-value=0.00032 Score=75.76 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=60.2
Q ss_pred EEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC-----------CChhHHHHHHHhhh----
Q 005218 223 TQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-----------VMPQTLEAIAHANA---- 287 (708)
Q Consensus 223 T~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g-----------~~~q~~~~l~~l~~---- 287 (708)
|..+....+.+ .+.++.++|.+||+.-..-|...+..++++|||++.++- .+.+++.++..+..
T Consensus 182 T~GI~e~~F~~-k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 182 TTGIVEVEFTI-KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred cCCeeEEEEEe-CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 44556666666 788999999999998888888999999999999998751 12233444444432
Q ss_pred cCCCEEEEEeCCCCC
Q 005218 288 ANVPIVVAINKCDKP 302 (708)
Q Consensus 288 ~~~piIvViNK~Dl~ 302 (708)
.+.++|+++||.||.
T Consensus 261 ~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLF 275 (354)
T ss_pred ccCcEEEEeecHHHH
Confidence 367899999999994
No 427
>PRK12288 GTPase RsgA; Reviewed
Probab=97.48 E-value=0.00032 Score=76.65 Aligned_cols=87 Identities=22% Similarity=0.220 Sum_probs=57.5
Q ss_pred cccccEEEEEEEccCCCChhHHHHH-HHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeec
Q 005218 258 AAVTDIVVLVVAADDGVMPQTLEAI-AHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~~~q~~~~l-~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
+.++|.+++|++.........++.+ ..+...++|.++|+||+||.+............ .+..+ ..+++++||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~---~y~~~--g~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLD---IYRNI--GYRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHH---HHHhC--CCeEEEEeCCC
Confidence 5789999999998765554443333 334456899999999999964321111111111 11122 25899999999
Q ss_pred CCCchhHHHHHHH
Q 005218 337 KTGLDDLEVALLL 349 (708)
Q Consensus 337 g~GI~~L~~~I~~ 349 (708)
+.|+++|++.|..
T Consensus 193 g~GideL~~~L~~ 205 (347)
T PRK12288 193 GEGLEELEAALTG 205 (347)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999998864
No 428
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00011 Score=79.34 Aligned_cols=114 Identities=29% Similarity=0.369 Sum_probs=82.7
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC-------cc---------------------cccccCceEEeeeEEEEEecCCeeEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT-------SL---------------------VAKEAGGITQHMGAFVVGMSTGASIT 240 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~-------~~---------------------~~~~~~gtT~di~~~~v~~~~g~~v~ 240 (708)
.++++++||.++||||+.-..++. .+ ......++|.++....+.. ..+.++
T Consensus 7 ~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t-~k~~i~ 85 (391)
T KOG0052|consen 7 HINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKYYVT 85 (391)
T ss_pred ccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccc-eeEEEE
Confidence 478999999999999986642110 00 0111124554444443333 567899
Q ss_pred EeeCCCcchhhhhhhcccccccEEEEEEEccCC-------CChhHHHHHHHhhhcC-CCEEEEEeCCCCCC
Q 005218 241 FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-------VMPQTLEAIAHANAAN-VPIVVAINKCDKPA 303 (708)
Q Consensus 241 liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g-------~~~q~~~~l~~l~~~~-~piIvViNK~Dl~~ 303 (708)
++|.|||++|...+..+..+||++++++.+..| ...|+.++.......+ .++++.+||||...
T Consensus 86 iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 86 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 999999999999999999999999999988442 2468888887777775 45899999999854
No 429
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.46 E-value=0.00099 Score=57.15 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=53.1
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEe
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
...|.+++...+.|..++|++.+|.+++||.+.+.|. ..+|++|+ .++++++.|.||+.|.|.
T Consensus 2 r~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~-~~~~~~~~a~aGd~v~l~ 66 (81)
T cd03695 2 RFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIE-TFDGELDEAGAGESVTLT 66 (81)
T ss_pred EeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEE-ECCcEeCEEcCCCEEEEE
Confidence 4567888876667778999999999999999999885 35799998 567889999999999875
No 430
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.45 E-value=0.005 Score=72.00 Aligned_cols=178 Identities=20% Similarity=0.219 Sum_probs=122.9
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCCC--CHhhHHhHHhcCC--EEEEeCCCCCc---hh-------HHHHHH
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSV--TQSDVDLAQACGA--CIVGFNVKSPP---TS-------VSQAAT 559 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~i--t~sDv~~A~~~~a--~Il~Fnv~~~~---~~-------~~~~a~ 559 (708)
-|+-|.-.=+...+..+..-++-+=|+++.-|.. |..-+..+...+. +|+.+|= .+. +. +++..+
T Consensus 55 iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK-~Dlv~~~~~~~~~~ei~~~l~ 133 (581)
T TIGR00475 55 IDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITK-ADRVNEEEIKRTEMFMKQILN 133 (581)
T ss_pred EECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEC-CCCCCHHHHHHHHHHHHHHHH
Confidence 4888876667777777777777788888887743 3333444554553 5666662 221 11 112222
Q ss_pred Hc----CCeEEEcc-----hhhhhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEe
Q 005218 560 QA----GIKILMHS-----IIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFT 630 (708)
Q Consensus 560 ~~----~V~i~~~~-----iIY~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~ 630 (708)
.. ++.++.-+ -|-+|++.+.+++....++. ..-.-+.-|-.+|++++.| +|+...|.+|+++
T Consensus 134 ~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~~--~~~p~r~~Id~~f~v~G~G-------tVv~G~v~~G~i~ 204 (581)
T TIGR00475 134 SYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIKR--IQKPLRMAIDRAFKVKGAG-------TVVTGTAFSGEVK 204 (581)
T ss_pred HhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCcC--cCCCcEEEEEEEEecCCcE-------EEEEEEEecceEe
Confidence 22 45665444 56677777776665543321 1222345677899998876 8999999999999
Q ss_pred eCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcccC--CCCCCCEE
Q 005218 631 RSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWH--DFQVGDII 684 (708)
Q Consensus 631 ~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~~--~~~~gD~i 684 (708)
.|+.+.+...+.. .+|.||+.+.++|.++..|+.|||.+.+.+ +++.|.++
T Consensus 205 ~Gd~l~i~P~~~~---~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~ 257 (581)
T TIGR00475 205 VGDNLRLLPINHE---VRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLI 257 (581)
T ss_pred cCCEEEECCCCce---EEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEE
Confidence 9999999887764 599999999999999999999999998753 78888444
No 431
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.44 E-value=8.5e-05 Score=80.08 Aligned_cols=60 Identities=25% Similarity=0.421 Sum_probs=50.4
Q ss_pred CCCCCCCEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 184 ~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
..+++.++|+|+|-||+||||++|+|..... .+...||+|+......+ +..+.|+|.||.
T Consensus 247 ~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L----dk~i~llDsPgi 307 (435)
T KOG2484|consen 247 GELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL----DKKIRLLDSPGI 307 (435)
T ss_pred cccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec----cCCceeccCCce
Confidence 3467889999999999999999999987776 45888999998776543 457999999995
No 432
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.41 E-value=0.00024 Score=79.73 Aligned_cols=142 Identities=19% Similarity=0.175 Sum_probs=76.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC------cccc-c---ccCce---------EEeeeEEEEE--------------e
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT------SLVA-K---EAGGI---------TQHMGAFVVG--------------M 233 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~------~~~~-~---~~~gt---------T~di~~~~v~--------------~ 233 (708)
.+|..|+++|++|+||||++..|... .+.. + ..++. ..++..+... .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 35778999999999999999887421 1110 0 00000 0000000000 0
Q ss_pred cCCeeEEEeeCCCcchhhhhh-----h-cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCc
Q 005218 234 STGASITFLDTPGHAAFSAMR-----K-RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADP 306 (708)
Q Consensus 234 ~~g~~v~liDTpG~~~f~~~~-----~-~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~ 306 (708)
...+.+.++||||.-...... . ..+..+|.+++|+|++.+ .+..+.+..... ..+ .-+++||+|-... .
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~a~-~ 248 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGTAK-G 248 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCCCc-c
Confidence 023589999999954432211 1 224568999999999875 233333333221 233 4678899997421 1
Q ss_pred chhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 307 ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
-........ ...|+.+++ +|+.+++|
T Consensus 249 G~~ls~~~~---------~~~Pi~fig--~Ge~v~Dl 274 (437)
T PRK00771 249 GGALSAVAE---------TGAPIKFIG--TGEKIDDL 274 (437)
T ss_pred cHHHHHHHH---------HCcCEEEEe--cCCCcccC
Confidence 111111111 124777776 68888766
No 433
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00089 Score=73.47 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=88.0
Q ss_pred cchhhhhHHHHHHHHhhcCC-CceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEE
Q 005218 568 HSIIYHLLDDFGNLVVDKAP-GTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFE 646 (708)
Q Consensus 568 ~~iIY~L~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~ 646 (708)
+-...+=|++++++|.+++. ++..++-..+.-|-..|++++.| +|.=-.|.+|.++.|..+.+.--|+.+
T Consensus 143 s~~~g~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvG-------TVVtGtv~sG~V~v~D~L~l~p~~k~v-- 213 (447)
T COG3276 143 SAKTGRGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVG-------TVVTGTVLSGEVKVGDKLYLSPINKEV-- 213 (447)
T ss_pred ccccCCCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEecccc-------EEEEeEEeeeeEEECCEEEEecCCCeE--
Confidence 33444556777777777663 45556666777788899999987 777778999999999999999888877
Q ss_pred EEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEEE
Q 005218 647 GSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQC 686 (708)
Q Consensus 647 g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie~ 686 (708)
+|+||+.+.+|++++..|+.||+.+.+- .+++-||.|-.
T Consensus 214 -~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~ 254 (447)
T COG3276 214 -RVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLK 254 (447)
T ss_pred -EEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEecc
Confidence 9999999999999999999999999875 47777776643
No 434
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.29 E-value=0.0007 Score=58.87 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=53.7
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc----cceEEEEecccCCcccccCCCCcEEEe
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE----WGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~----~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
...|.+++..++.|++++|++.+|++++||.+.+.+. ..+|++|+ .+++.+++|.||+.|.+.
T Consensus 2 r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~-~~~~~~~~a~~G~~v~l~ 68 (87)
T cd03697 2 LMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIE-MFRKTLDEAEAGDNVGVL 68 (87)
T ss_pred EeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEE-ECCcCCCEECCCCEEEEE
Confidence 3567788888889999999999999999999988653 45799998 567889999999999875
No 435
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.28 E-value=0.012 Score=65.92 Aligned_cols=187 Identities=13% Similarity=0.156 Sum_probs=116.3
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCC---CCHhhHHhHHhcC--CEEEEeCCCCCch----h------HHHHH
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGS---VTQSDVDLAQACG--ACIVGFNVKSPPT----S------VSQAA 558 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~---it~sDv~~A~~~~--a~Il~Fnv~~~~~----~------~~~~a 558 (708)
-|+-|..+=+.+.+.....-++-+-|+.+.-|. -+...+..+...+ .+|+.+| |.+.. . +..+.
T Consensus 90 iDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlN-K~Dl~~~~~~~~~~~~i~~~l 168 (411)
T PRK04000 90 VDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQN-KIDLVSKERALENYEQIKEFV 168 (411)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEE-eeccccchhHHHHHHHHHHHh
Confidence 599998777777777776667778888887654 2334444554444 3566665 33321 1 01111
Q ss_pred HH---cCCeEEEcc-----hhhhhHHHHHHHHhhcCCC-ceeeeeeeceeEeeEEEeCCCCC-CCCCCceEEEEEEEecE
Q 005218 559 TQ---AGIKILMHS-----IIYHLLDDFGNLVVDKAPG-TFETQVAGEAEVLNIFELKGRSK-AKGDDVKIAGCRVIDGC 628 (708)
Q Consensus 559 ~~---~~V~i~~~~-----iIY~L~d~~~~~~~~~~~~-~~~~~~~g~a~v~~vf~~~~~~~-~~~~~~~iaGc~V~~G~ 628 (708)
+. .++.++.-+ -|-.|++.+. ..+++ .......=++.|..+|.+++.+. ..+...+|+..+|..|.
T Consensus 169 ~~~~~~~~~ii~vSA~~g~gI~~L~~~L~----~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~ 244 (411)
T PRK04000 169 KGTVAENAPIIPVSALHKVNIDALIEAIE----EEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGV 244 (411)
T ss_pred ccccCCCCeEEEEECCCCcCHHHHHHHHH----HhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCE
Confidence 11 134554332 3445555444 43332 21112223467778898776431 01111357777999999
Q ss_pred EeeCCeEEEeeCCe------EEE---EEEEeeeeccccccceeccCCeEEEEEc---cc--CCCCCCCEEE
Q 005218 629 FTRSSTMRLLRSGE------VVF---EGSCISLKREKQDVDTVAKGNECGLVIR---DW--HDFQVGDIIQ 685 (708)
Q Consensus 629 i~~~~~~rv~R~~~------~i~---~g~i~slk~~k~~V~ev~kG~ecgi~~~---~~--~~~~~gD~ie 685 (708)
+++|..+.++..+. -.| ..+|.||+.+.+++.++..|+.+||.+. +- .++..||++-
T Consensus 245 l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~ 315 (411)
T PRK04000 245 LKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAG 315 (411)
T ss_pred EecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEE
Confidence 99999999998653 122 4689999999999999999999999985 32 4688888863
No 436
>CHL00071 tufA elongation factor Tu
Probab=97.27 E-value=0.0064 Score=68.15 Aligned_cols=82 Identities=17% Similarity=0.314 Sum_probs=69.0
Q ss_pred eceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEee--CCeEEEEEEEeeeeccccccceeccCCeEEEEEc
Q 005218 596 GEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLR--SGEVVFEGSCISLKREKQDVDTVAKGNECGLVIR 673 (708)
Q Consensus 596 g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R--~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~ 673 (708)
=++-|..+|++++.| +|+..+|.+|.++.|+.+.++- ++ ...+|.||+.++++++++..|+.|||.+.
T Consensus 221 ~r~~I~~v~~~~g~G-------~Vv~G~V~sG~l~~Gd~v~i~p~~~~---~~~~VksI~~~~~~v~~a~aGd~v~i~l~ 290 (409)
T CHL00071 221 FLMAIEDVFSITGRG-------TVATGRIERGTVKVGDTVEIVGLRET---KTTTVTGLEMFQKTLDEGLAGDNVGILLR 290 (409)
T ss_pred EEEEEEEEEEeCCCe-------EEEEEEEecCEEeeCCEEEEeeCCCC---cEEEEEEEEEcCcCCCEECCCceeEEEEc
Confidence 345677899988876 7888899999999999998764 33 23699999999999999999999999998
Q ss_pred ccC--CCCCCCEEEEE
Q 005218 674 DWH--DFQVGDIIQCL 687 (708)
Q Consensus 674 ~~~--~~~~gD~ie~y 687 (708)
+.+ +++.||+|-.-
T Consensus 291 ~i~~~~i~~G~vl~~~ 306 (409)
T CHL00071 291 GIQKEDIERGMVLAKP 306 (409)
T ss_pred CCCHHHcCCeEEEecC
Confidence 754 89999998543
No 437
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.27 E-value=0.017 Score=65.51 Aligned_cols=191 Identities=13% Similarity=0.138 Sum_probs=119.8
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCC---CCCHhhHHhHHhcCC--EEEEeCCCCCc---hh----HHHHHHH-
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVG---SVTQSDVDLAQACGA--CIVGFNVKSPP---TS----VSQAATQ- 560 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG---~it~sDv~~A~~~~a--~Il~Fnv~~~~---~~----~~~~a~~- 560 (708)
-|+-|--.=+.+.+..+..-+..+=|+.+.=| +-|..-+..|...+- .|+.+|= ++. +. ..++.+.
T Consensus 122 IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNK-iDlv~~~~~~~~~~ei~~~l 200 (460)
T PTZ00327 122 VDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNK-IDLVKEAQAQDQYEEIRNFV 200 (460)
T ss_pred eeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEec-ccccCHHHHHHHHHHHHHHH
Confidence 68888777678888888777777778888644 445556666666653 4667774 332 11 1111110
Q ss_pred -----cCCeEEEcchhhh-hHHHHHHHHhhcCCCc-eeeeeeeceeEeeEEEeCCCCC-CCCCCceEEEEEEEecEEeeC
Q 005218 561 -----AGIKILMHSIIYH-LLDDFGNLVVDKAPGT-FETQVAGEAEVLNIFELKGRSK-AKGDDVKIAGCRVIDGCFTRS 632 (708)
Q Consensus 561 -----~~V~i~~~~iIY~-L~d~~~~~~~~~~~~~-~~~~~~g~a~v~~vf~~~~~~~-~~~~~~~iaGc~V~~G~i~~~ 632 (708)
.++.|+.-+-... =++.+.++|.+.+++. ......=++.|-.+|.+.+.+. ......+|+..+|.+|.++.|
T Consensus 201 ~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~G 280 (460)
T PTZ00327 201 KGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVG 280 (460)
T ss_pred HhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecC
Confidence 2445554432221 1345555555555532 2222222355777888775220 000113788999999999999
Q ss_pred CeEEEeeC-------CeEEE---EEEEeeeeccccccceeccCCeEEEEEc---cc--CCCCCCCEEE
Q 005218 633 STMRLLRS-------GEVVF---EGSCISLKREKQDVDTVAKGNECGLVIR---DW--HDFQVGDIIQ 685 (708)
Q Consensus 633 ~~~rv~R~-------~~~i~---~g~i~slk~~k~~V~ev~kG~ecgi~~~---~~--~~~~~gD~ie 685 (708)
+.+.+... |+..+ ..+|.||+.+.++|+++..|+.|||.+. +. .+++.||++-
T Consensus 281 d~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~ 348 (460)
T PTZ00327 281 DEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLG 348 (460)
T ss_pred CEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEE
Confidence 99988863 33332 4699999999999999999999999886 32 4677888874
No 438
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.22 E-value=0.0017 Score=57.29 Aligned_cols=75 Identities=16% Similarity=0.058 Sum_probs=55.8
Q ss_pred ceeEEEEEeeCCC-CcEEEEEEEeeEEcCCCEEEEcc-c----------cceEEEEeccc---CCcccccCCCCcEEEec
Q 005218 365 QAYVVEARLDKGR-GPLTTAIVKAGTLVCGQHVVVGH-E----------WGRIRAIRDMV---GKSTDKARPAMPVEIEG 429 (708)
Q Consensus 365 ~~~V~e~~~~~~~-G~v~~~~V~~G~L~~gd~v~~g~-~----------~~kVr~i~~~~---~~~v~~a~~g~~V~i~g 429 (708)
.++|+++..++.. +.++.++|.+|+|++|+.|.+.. . ..+|..|+... ..+++++.+|+.|.+.|
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~g 81 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIKG 81 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEEC
Confidence 3567888888876 67899999999999999997632 1 13555555444 45789999999999999
Q ss_pred cCCCCCCCCeE
Q 005218 430 LKGLPMAGDDI 440 (708)
Q Consensus 430 l~~~~~~Gd~~ 440 (708)
+++. ..+.+.
T Consensus 82 l~~~-~~~~~t 91 (94)
T cd04090 82 IDSS-IVKTAT 91 (94)
T ss_pred cchh-eeceEE
Confidence 9874 455443
No 439
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=97.21 E-value=0.0003 Score=58.86 Aligned_cols=64 Identities=30% Similarity=0.303 Sum_probs=51.9
Q ss_pred CcEEEEEEEeeEEcCCCEEEEcc--c-----cceEEEEecccC---CcccccCCCCcEEEeccCCCCCCCCeEE
Q 005218 378 GPLTTAIVKAGTLVCGQHVVVGH--E-----WGRIRAIRDMVG---KSTDKARPAMPVEIEGLKGLPMAGDDII 441 (708)
Q Consensus 378 G~v~~~~V~~G~L~~gd~v~~g~--~-----~~kVr~i~~~~~---~~v~~a~~g~~V~i~gl~~~~~~Gd~~~ 441 (708)
|.+++++|.+|+|++||.|.+.+ + ..+|++|+..++ ..+..+.+|+.+.+.++++....||++.
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 67899999999999999999944 2 268999987766 5677788888888888888338999874
No 440
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0029 Score=70.59 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=77.1
Q ss_pred CCCCCCCEEEEEecCCCCchHHHHHhhcCcccc---cccCceEEee------------------eEEE-----------E
Q 005218 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVA---KEAGGITQHM------------------GAFV-----------V 231 (708)
Q Consensus 184 ~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~---~~~~gtT~di------------------~~~~-----------v 231 (708)
+....+.+++++|+.|+||||++..|.+..... ...+-+|.|. .... .
T Consensus 186 ~~~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~ 265 (420)
T PRK14721 186 EIIEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH 265 (420)
T ss_pred cccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH
Confidence 345677899999999999999999886531100 0000011110 0000 0
Q ss_pred EecCCeeEEEeeCCCcchhhhhh----h--cccccccEEEEEEEccCCCChhHHHH-HHHhhhcCCCEEEEEeCCCCCCC
Q 005218 232 GMSTGASITFLDTPGHAAFSAMR----K--RGAAVTDIVVLVVAADDGVMPQTLEA-IAHANAANVPIVVAINKCDKPAA 304 (708)
Q Consensus 232 ~~~~g~~v~liDTpG~~~f~~~~----~--~~~~~aDivllVvDa~~g~~~q~~~~-l~~l~~~~~piIvViNK~Dl~~~ 304 (708)
.+ .+..+.++||+|........ . ......+-.+||+|++.+ .++... +......+ .-=+++||.|-..
T Consensus 266 ~l-~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~-~~~~I~TKlDEt~- 340 (420)
T PRK14721 266 EL-RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHG-IHGCIITKVDEAA- 340 (420)
T ss_pred Hh-cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCC-CCEEEEEeeeCCC-
Confidence 01 45689999999954422111 1 112234567899998752 333333 33333222 2456889999743
Q ss_pred CcchhhhhhhhcccchhccCCcceEEEEeeecCCCc-hhHH
Q 005218 305 DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL-DDLE 344 (708)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI-~~L~ 344 (708)
..-.+...+... ..|+.+++ +|+++ ++|.
T Consensus 341 ~~G~~l~~~~~~---------~lPi~yvt--~Gq~VP~Dl~ 370 (420)
T PRK14721 341 SLGIALDAVIRR---------KLVLHYVT--NGQKVPEDLH 370 (420)
T ss_pred CccHHHHHHHHh---------CCCEEEEE--CCCCchhhhh
Confidence 222222222221 24666665 78998 4543
No 441
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.16 E-value=0.00079 Score=64.58 Aligned_cols=59 Identities=24% Similarity=0.356 Sum_probs=37.2
Q ss_pred CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCC
Q 005218 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCD 300 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~D 300 (708)
.++.+.|+||||..... ...+..||.+++|...+- ......++. .-...--++++||+|
T Consensus 90 ~~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~---~D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGA---GDDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccChhh---hhHHHhCCEEEEEECCCc---hhHHHHhhh-hHhhhcCEEEEeCCC
Confidence 35789999999964322 236789999999986652 112222211 122334589999998
No 442
>PRK13796 GTPase YqeH; Provisional
Probab=97.15 E-value=0.0012 Score=72.74 Aligned_cols=96 Identities=30% Similarity=0.302 Sum_probs=58.2
Q ss_pred hhhhhhhccccccc-EEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc--chhhhhhhhcccchhccCC
Q 005218 249 AFSAMRKRGAAVTD-IVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDWGG 325 (708)
Q Consensus 249 ~f~~~~~~~~~~aD-ivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~~~ 325 (708)
+|.... ..+..+| ++++|+|+.+.. ..+...+.... .+.|+++|+||+||...+. +++...+... ....+-
T Consensus 58 ~~~~~l-~~i~~~~~lIv~VVD~~D~~-~s~~~~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~---~k~~g~ 131 (365)
T PRK13796 58 DFLKLL-NGIGDSDALVVNVVDIFDFN-GSWIPGLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQE---AKELGL 131 (365)
T ss_pred HHHHHH-HhhcccCcEEEEEEECccCC-CchhHHHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHH---HHhcCC
Confidence 454433 3445555 999999998732 33444444433 3789999999999964221 1222111110 011111
Q ss_pred -cceEEEEeeecCCCchhHHHHHHHH
Q 005218 326 -KVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 326 -~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
...++.+||++|.|+++|++.|...
T Consensus 132 ~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 132 RPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 1258999999999999999998663
No 443
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.13 E-value=0.0019 Score=56.80 Aligned_cols=74 Identities=27% Similarity=0.275 Sum_probs=56.3
Q ss_pred eeEEEEEeeC-CCCcEEEEEEEeeEEcCCCEEEEcc---------c--cceEEEEecccC---CcccccCCCCcEEEecc
Q 005218 366 AYVVEARLDK-GRGPLTTAIVKAGTLVCGQHVVVGH---------E--WGRIRAIRDMVG---KSTDKARPAMPVEIEGL 430 (708)
Q Consensus 366 ~~V~e~~~~~-~~G~v~~~~V~~G~L~~gd~v~~g~---------~--~~kVr~i~~~~~---~~v~~a~~g~~V~i~gl 430 (708)
++++....++ +.|.++.++|.+|+|++|+.+.+.. . ..+|..|....+ .+++++.+|+.|.|.|+
T Consensus 3 ~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~ 82 (93)
T cd03700 3 MYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIVGL 82 (93)
T ss_pred EEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEECC
Confidence 4677777777 8899999999999999999997643 1 134555544433 67899999999999998
Q ss_pred CCCCCCCCeE
Q 005218 431 KGLPMAGDDI 440 (708)
Q Consensus 431 ~~~~~~Gd~~ 440 (708)
+++ ..|++.
T Consensus 83 ~~~-~~g~~~ 91 (93)
T cd03700 83 DQL-KSGTTA 91 (93)
T ss_pred ccC-ceEeEe
Confidence 875 577653
No 444
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.001 Score=73.03 Aligned_cols=143 Identities=14% Similarity=0.177 Sum_probs=75.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc------ccc-cc--c--Cce--------EEeeeEEEEEe-----------c--
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS------LVA-KE--A--GGI--------TQHMGAFVVGM-----------S-- 234 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~------~~~-~~--~--~gt--------T~di~~~~v~~-----------~-- 234 (708)
.++.+|+++|++|+||||++..|...- +.. +. . +.. ..++....... .
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 346789999999999999999985311 110 00 0 000 00011000000 0
Q ss_pred CCeeEEEeeCCCcchhhh--h--hhcc--cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcch
Q 005218 235 TGASITFLDTPGHAAFSA--M--RKRG--AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER 308 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~--~--~~~~--~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~ 308 (708)
.++.+.|+||||...... + .... ....|-++||+|++.+. ....+.+......++ -=++++|+|-.. ..-.
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~i-dglI~TKLDET~-k~G~ 395 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDETA-SSGE 395 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCC-CEEEEEcccCCC-CccH
Confidence 146899999999543221 1 1111 23457789999986421 222444444443332 456889999753 2222
Q ss_pred hhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 309 VKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 309 ~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+....... ..|+.+++ +|+++++=
T Consensus 396 iLni~~~~---------~lPIsyit--~GQ~VPeD 419 (436)
T PRK11889 396 LLKIPAVS---------SAPIVLMT--DGQDVKKN 419 (436)
T ss_pred HHHHHHHH---------CcCEEEEe--CCCCCCcc
Confidence 22222211 24666665 68888653
No 445
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.05 E-value=0.0044 Score=51.42 Aligned_cols=74 Identities=31% Similarity=0.429 Sum_probs=58.5
Q ss_pred ceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcc--c--cceEEEEecccCCcccccCCCCcEEEeccCC--CCCCCC
Q 005218 365 QAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--E--WGRIRAIRDMVGKSTDKARPAMPVEIEGLKG--LPMAGD 438 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~--~--~~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~--~~~~Gd 438 (708)
...+.+++.+++.|.++.+++.+|+|++|+.+.+.+ . ..+|++++..+ ..+.++.||+.+.+.+... + ..|+
T Consensus 2 ~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~-~~~~~~~aG~~~~~~~~~~~~~-~~g~ 79 (83)
T cd01342 2 RALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK-GEVDEAVAGDIVGIVLKDKDDI-KIGD 79 (83)
T ss_pred eeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC-ceeceecCCCEEEEEEcccccc-CCCC
Confidence 356788888888899999999999999999999876 3 35688887554 6788899999999887543 2 4666
Q ss_pred eE
Q 005218 439 DI 440 (708)
Q Consensus 439 ~~ 440 (708)
.+
T Consensus 80 ~l 81 (83)
T cd01342 80 TL 81 (83)
T ss_pred Ee
Confidence 54
No 446
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.97 E-value=0.001 Score=83.72 Aligned_cols=112 Identities=23% Similarity=0.274 Sum_probs=66.5
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcCccccccc--------CceEEeeeEEEEEecCCeeEEEeeCCCcch-------
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEA--------GGITQHMGAFVVGMSTGASITFLDTPGHAA------- 249 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~--------~gtT~di~~~~v~~~~g~~v~liDTpG~~~------- 249 (708)
.+..-|=..++|++|+|||||++.- +-.+...+. .+-|+++.-. -...-.++||+|.--
T Consensus 107 ~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-----f~~~avliDtaG~y~~~~~~~~ 180 (1169)
T TIGR03348 107 YLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-----FTDEAVLIDTAGRYTTQDSDPE 180 (1169)
T ss_pred hhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-----ecCCEEEEcCCCccccCCCccc
Confidence 3455678999999999999999886 333332211 1223322211 223567999999211
Q ss_pred --------hhhhhh--cccccccEEEEEEEccCCCC--hhHH-HH----------HHHhhhcCCCEEEEEeCCCCC
Q 005218 250 --------FSAMRK--RGAAVTDIVVLVVAADDGVM--PQTL-EA----------IAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 250 --------f~~~~~--~~~~~aDivllVvDa~~g~~--~q~~-~~----------l~~l~~~~~piIvViNK~Dl~ 302 (708)
|..+.. +.-+-.|+||+++|+.+-.. ++.+ .+ +........|+.|++||||+.
T Consensus 181 ~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 181 EDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred ccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 111111 22356899999999986321 1111 11 112223578999999999986
No 447
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.95 E-value=0.0056 Score=68.84 Aligned_cols=144 Identities=20% Similarity=0.170 Sum_probs=74.5
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcc--cc-cccCceEEee------------------eEEEEEe----------c
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL--VA-KEAGGITQHM------------------GAFVVGM----------S 234 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~--~~-~~~~gtT~di------------------~~~~v~~----------~ 234 (708)
...+..++++|++|+||||++-.|...-. .. ....-+|.|. ....... .
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~ 297 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL 297 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh
Confidence 34567899999999999998887743211 00 0000011110 0000000 0
Q ss_pred CCeeEEEeeCCCcchhhh----hhhcccc---cccEEEEEEEccCCCChhHH-HHHHHhhhcCCCEEEEEeCCCCCCCCc
Q 005218 235 TGASITFLDTPGHAAFSA----MRKRGAA---VTDIVVLVVAADDGVMPQTL-EAIAHANAANVPIVVAINKCDKPAADP 306 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~----~~~~~~~---~aDivllVvDa~~g~~~q~~-~~l~~l~~~~~piIvViNK~Dl~~~~~ 306 (708)
.++.+.|+||||...... .....+. ..+-+++|++++.+ ..+. +.+......+. -=+++||+|-.. ..
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~~-~~vI~TKlDet~-~~ 373 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLPL-DGLIFTKLDETS-SL 373 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCCC-CEEEEecccccc-cc
Confidence 457899999999643321 1111112 23467888888653 2333 33444443332 358899999742 22
Q ss_pred chhhhhhhhcccchhccCCcceEEEEeeecCCCc-hhHH
Q 005218 307 ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL-DDLE 344 (708)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI-~~L~ 344 (708)
..+...+... ..|+.+++ +|+++ ++|.
T Consensus 374 G~i~~~~~~~---------~lPv~yit--~Gq~VpdDl~ 401 (424)
T PRK05703 374 GSILSLLIES---------GLPISYLT--NGQRVPDDIK 401 (424)
T ss_pred cHHHHHHHHH---------CCCEEEEe--CCCCChhhhh
Confidence 2333333222 23666665 78887 4443
No 448
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.90 E-value=0.0025 Score=62.28 Aligned_cols=66 Identities=24% Similarity=0.257 Sum_probs=39.6
Q ss_pred CCeeEEEeeCCCcchhhh----hhhc--ccccccEEEEEEEccCCCChhHHHHHHHh-hhcCCCEEEEEeCCCCCC
Q 005218 235 TGASITFLDTPGHAAFSA----MRKR--GAAVTDIVVLVVAADDGVMPQTLEAIAHA-NAANVPIVVAINKCDKPA 303 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~----~~~~--~~~~aDivllVvDa~~g~~~q~~~~l~~l-~~~~~piIvViNK~Dl~~ 303 (708)
.++.+.++||||...+.. .... .....|.+++|+|+..+ ....+..... ...+ ..-+++||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-~~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-CCEEEEECCcCCC
Confidence 466799999999743221 1111 12358999999998643 2333333332 2334 3567779999854
No 449
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.85 E-value=0.0086 Score=65.77 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=78.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc--cc-cccCceEEeeeE-----------------EEEEec-----------C
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL--VA-KEAGGITQHMGA-----------------FVVGMS-----------T 235 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~--~~-~~~~gtT~di~~-----------------~~v~~~-----------~ 235 (708)
.++..|+++|++||||||-+-.|..... .. ...+-+|.|... ..+..+ .
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 3478999999999999999988865433 11 122233333110 000000 4
Q ss_pred CeeEEEeeCCCcchhhhhhh----ccc--ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchh
Q 005218 236 GASITFLDTPGHAAFSAMRK----RGA--AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV 309 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~~~~----~~~--~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~ 309 (708)
.+.+.|+||+|+.....+.. .++ ....-+.||++++.. ...-.+.+......++. =++++|+|-.. ..-.+
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET~-s~G~~ 357 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDETT-SLGNL 357 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEcccccC-chhHH
Confidence 56899999999655433222 222 234556778887642 22333445555444433 35679999753 22222
Q ss_pred hhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 310 KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 310 ~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
...+.+. ..|+-.++ +|++|++
T Consensus 358 ~s~~~e~---------~~PV~YvT--~GQ~VPe 379 (407)
T COG1419 358 FSLMYET---------RLPVSYVT--NGQRVPE 379 (407)
T ss_pred HHHHHHh---------CCCeEEEe--CCCCCCc
Confidence 2222221 23555555 7888864
No 450
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.0067 Score=66.55 Aligned_cols=142 Identities=11% Similarity=0.138 Sum_probs=73.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc------cc-cc--cc-C-ce------E--EeeeEEEEEe-------------
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS------LV-AK--EA-G-GI------T--QHMGAFVVGM------------- 233 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~------~~-~~--~~-~-gt------T--~di~~~~v~~------------- 233 (708)
..++..++++|+.|+||||++..|...- +. ++ .. . +. . .++.......
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 3567889999999999999999985321 11 00 00 0 00 0 0111110000
Q ss_pred cCCeeEEEeeCCCcchhhh----hhhcc--cccccEEEEEEEccCCCChhH-HHHHHHhhhcCCCEEEEEeCCCCCCCCc
Q 005218 234 STGASITFLDTPGHAAFSA----MRKRG--AAVTDIVVLVVAADDGVMPQT-LEAIAHANAANVPIVVAINKCDKPAADP 306 (708)
Q Consensus 234 ~~g~~v~liDTpG~~~f~~----~~~~~--~~~aDivllVvDa~~g~~~q~-~~~l~~l~~~~~piIvViNK~Dl~~~~~ 306 (708)
..++.+.|+||||...... ..... ....|.+++|+++.. ..++ .+.+......+ +--+++||.|-.. ..
T Consensus 283 ~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~l~-i~glI~TKLDET~-~~ 358 (407)
T PRK12726 283 VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAEIP-IDGFIITKMDETT-RI 358 (407)
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCcCC-CCEEEEEcccCCC-Cc
Confidence 0257899999999643221 11111 224577788887643 2323 23333322222 2466799999742 22
Q ss_pred chhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 307 ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
-.+....... ..|+.++| +|+++++
T Consensus 359 G~~Lsv~~~t---------glPIsylt--~GQ~Vpd 383 (407)
T PRK12726 359 GDLYTVMQET---------NLPVLYMT--DGQNITE 383 (407)
T ss_pred cHHHHHHHHH---------CCCEEEEe--cCCCCCc
Confidence 2222222211 24666665 6888875
No 451
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.84 E-value=0.01 Score=51.25 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=58.6
Q ss_pred eeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc-----cceEEEEecccCCcccccCCCCcEEEe--ccCCCCCCCC
Q 005218 366 AYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE-----WGRIRAIRDMVGKSTDKARPAMPVEIE--GLKGLPMAGD 438 (708)
Q Consensus 366 ~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~-----~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~~~~~~Gd 438 (708)
+.|.+++...+.|.++.++|.+|.+++|+.+.+.+. .++|++|+ ...+.++++.+|+.+.|. +++++ .+||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~-~~~~~v~~a~~G~ecgi~l~~~~d~-~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLK-RFKDDVKEVKKGYECGITLENFNDI-KVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEE-EcCcccCEECCCCEEEEEEeCcccC-CCCC
Confidence 346667766667899999999999999999988653 46899998 457789999999998765 66655 5788
Q ss_pred eEE
Q 005218 439 DII 441 (708)
Q Consensus 439 ~~~ 441 (708)
.+.
T Consensus 81 vi~ 83 (84)
T cd03692 81 IIE 83 (84)
T ss_pred EEE
Confidence 663
No 452
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.82 E-value=0.00042 Score=74.47 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=45.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~ 248 (708)
++.+.|+++|-||+||||++|.|+...+.. .+++|-|.=-.+.++ -..+.|||+||.-
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL----mkrIfLIDcPGvV 363 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL----MKRIFLIDCPGVV 363 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH----HhceeEecCCCcc
Confidence 467899999999999999999999988754 788888753322222 2578999999953
No 453
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.82 E-value=0.0022 Score=65.21 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=44.3
Q ss_pred eeEEEeeC-CCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcC-CCEEEEEeCCCCC
Q 005218 237 ASITFLDT-PGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAAN-VPIVVAINKCDKP 302 (708)
Q Consensus 237 ~~v~liDT-pG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~-~piIvViNK~Dl~ 302 (708)
+.+.++|| ||.+.|+.- ..+.+|.+|+|+|.+........+.-+.....+ .++.+|+||+|-.
T Consensus 134 ~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 35777887 577776643 357899999999998643333344444455678 7899999999963
No 454
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.80 E-value=0.041 Score=64.61 Aligned_cols=182 Identities=19% Similarity=0.189 Sum_probs=112.4
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCC--CCHhhHHhHHhcCCEEEEeCCCCCch------hHHHHHHHcCCe-
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGS--VTQSDVDLAQACGACIVGFNVKSPPT------SVSQAATQAGIK- 564 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~--it~sDv~~A~~~~a~Il~Fnv~~~~~------~~~~~a~~~~V~- 564 (708)
-|+-|..+-.......+..-+.-+=|+.+.-|. -|...+..+...+-.++-+--|++.. ...++++..+..
T Consensus 75 iDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~ 154 (595)
T TIGR01393 75 IDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDA 154 (595)
T ss_pred EECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCc
Confidence 588888776555555555556667777776552 23334455555554444444455421 113444444542
Q ss_pred --E-----EEcchhhhhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEE
Q 005218 565 --I-----LMHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRL 637 (708)
Q Consensus 565 --i-----~~~~iIY~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv 637 (708)
+ .+..-|-+|++.+.+.+ -+|.....-.=.|.|-++|..+.+| .|+-++|.+|.++.|..+.+
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~l---p~p~~~~~~pl~~~V~~~~~d~~~G-------~v~~~rV~sG~lk~Gd~v~~ 224 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRV---PPPKGDPDAPLKALIFDSHYDNYRG-------VVALVRVFEGTIKPGDKIRF 224 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhC---CCCCCCCCCCeEEEEEEEEEeCCCc-------EEEEEEEECCEEecCCEEEE
Confidence 2 22334556666554433 2222222222245666677666665 89999999999999999999
Q ss_pred eeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcc---cCCCCCCCEEEE
Q 005218 638 LRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRD---WHDFQVGDIIQC 686 (708)
Q Consensus 638 ~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~---~~~~~~gD~ie~ 686 (708)
++.|..--.+.|..+...+..|.++..|+ +|+.+.+ ..+++.||.|-.
T Consensus 225 ~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~ 275 (595)
T TIGR01393 225 MSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTITH 275 (595)
T ss_pred ecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEEC
Confidence 99886543455555555558899999999 8887764 568999999943
No 455
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.01 Score=65.71 Aligned_cols=143 Identities=15% Similarity=0.136 Sum_probs=74.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC----------cccc---cc-cCc-------eEE--eeeEEEEEe----------c
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT----------SLVA---KE-AGG-------ITQ--HMGAFVVGM----------S 234 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~----------~~~~---~~-~~g-------tT~--di~~~~v~~----------~ 234 (708)
++..|+++|++|+||||.+..|... .+.. .. ..+ ... .+....... .
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 4678999999999999999887531 1110 00 000 000 010000000 0
Q ss_pred CCeeEEEeeCCCcchhhhh----hhcccc--ccc-EEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcc
Q 005218 235 TGASITFLDTPGHAAFSAM----RKRGAA--VTD-IVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE 307 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~----~~~~~~--~aD-ivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~ 307 (708)
.++.+.|+||||.-....+ ....+. ..+ -.+||+|++.+. ....+.+......+ +-=++++|.|-.. ..-
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~-~~~~~~~~~~~~~~-~~~~I~TKlDet~-~~G 329 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT-SDVKEIFHQFSPFS-YKTVIFTKLDETT-CVG 329 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH-HHHHHHHHHhcCCC-CCEEEEEeccCCC-cch
Confidence 4678999999995432211 111122 123 588999998752 22223333333222 3457889999742 222
Q ss_pred hhhhhhhhcccchhccCCcceEEEEeeecCCCc-hhHH
Q 005218 308 RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL-DDLE 344 (708)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI-~~L~ 344 (708)
.+....... ..|+.+++ +|+++ ++|.
T Consensus 330 ~~l~~~~~~---------~~Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 330 NLISLIYEM---------RKEVSYVT--DGQIVPHNIS 356 (388)
T ss_pred HHHHHHHHH---------CCCEEEEe--CCCCChhhhh
Confidence 222222211 23666665 78999 5554
No 456
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.78 E-value=0.045 Score=61.31 Aligned_cols=186 Identities=13% Similarity=0.112 Sum_probs=112.2
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCC---CCHhhHHhHHhcC--CEEEEeCCCCCch----h---HHHHH---
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGS---VTQSDVDLAQACG--ACIVGFNVKSPPT----S---VSQAA--- 558 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~---it~sDv~~A~~~~--a~Il~Fnv~~~~~----~---~~~~a--- 558 (708)
-|+-|.-+=+...+.....-++-+=|+.+.-|. -|..-+..+...+ .+|+..|= .+.. . ..++.
T Consensus 85 iDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK-~Dl~~~~~~~~~~~~i~~~l 163 (406)
T TIGR03680 85 VDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNK-IDLVSKEKALENYEEIKEFV 163 (406)
T ss_pred EECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEc-cccCCHHHHHHHHHHHHhhh
Confidence 688887776777777776667777888887653 2333444455554 24565543 3321 0 01111
Q ss_pred HH---cCCeEEEc-----chhhhhHHHHHHHHhhcCC-CceeeeeeeceeEeeEEEeCCCCC-CCCCCceEEEEEEEecE
Q 005218 559 TQ---AGIKILMH-----SIIYHLLDDFGNLVVDKAP-GTFETQVAGEAEVLNIFELKGRSK-AKGDDVKIAGCRVIDGC 628 (708)
Q Consensus 559 ~~---~~V~i~~~-----~iIY~L~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~-~~~~~~~iaGc~V~~G~ 628 (708)
+. .++.++.- +-|..|++. +...++ |.......=++-|..+|.+++.+. ......+|+..+|.+|.
T Consensus 164 ~~~~~~~~~ii~vSA~~g~gi~~L~e~----L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~ 239 (406)
T TIGR03680 164 KGTVAENAPIIPVSALHNANIDALLEA----IEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGK 239 (406)
T ss_pred hhcccCCCeEEEEECCCCCChHHHHHH----HHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCE
Confidence 11 13444432 234444444 444333 211112223456777888776431 00001257788999999
Q ss_pred EeeCCeEEEeeCCeE------EE---EEEEeeeeccccccceeccCCeEEEEEc---c--cCCCCCCCEE
Q 005218 629 FTRSSTMRLLRSGEV------VF---EGSCISLKREKQDVDTVAKGNECGLVIR---D--WHDFQVGDII 684 (708)
Q Consensus 629 i~~~~~~rv~R~~~~------i~---~g~i~slk~~k~~V~ev~kG~ecgi~~~---~--~~~~~~gD~i 684 (708)
++.|..+.+...+.. .+ ..+|.||+.+.+++.++..|+.+||.++ + -.|+..||++
T Consensus 240 i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl 309 (406)
T TIGR03680 240 LKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVV 309 (406)
T ss_pred EeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEE
Confidence 999999999876432 11 2589999999999999999999999884 2 2477778865
No 457
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.74 E-value=0.0036 Score=71.00 Aligned_cols=144 Identities=19% Similarity=0.162 Sum_probs=74.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccc-c--ccCceEEee------------------eEEE-----------EEe
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-K--EAGGITQHM------------------GAFV-----------VGM 233 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~--~~~gtT~di------------------~~~~-----------v~~ 233 (708)
..++..++++|+.|+||||++..|....... . ...-++.|. .... ..+
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L 332 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL 332 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc
Confidence 4567789999999999999999986422100 0 011111111 0000 011
Q ss_pred cCCeeEEEeeCCCcchhhhhh-h--cc---cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcc
Q 005218 234 STGASITFLDTPGHAAFSAMR-K--RG---AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE 307 (708)
Q Consensus 234 ~~g~~v~liDTpG~~~f~~~~-~--~~---~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~ 307 (708)
.++.+.++||+|........ . .. .....-.+||+|++.+. ....+.+......+ .--+++||+|-.. ..-
T Consensus 333 -~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~-~~g~IlTKlDet~-~~G 408 (484)
T PRK06995 333 -RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPG-LAGCILTKLDEAA-SLG 408 (484)
T ss_pred -cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCC-CCEEEEeCCCCcc-cch
Confidence 35678999999943222111 1 11 11122378999987532 12222333333333 3456789999742 222
Q ss_pred hhhhhhhhcccchhccCCcceEEEEeeecCCCc-hhHH
Q 005218 308 RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL-DDLE 344 (708)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI-~~L~ 344 (708)
.+....... ..|+.+++ +|++| ++|.
T Consensus 409 ~~l~i~~~~---------~lPI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 409 GALDVVIRY---------KLPLHYVS--NGQRVPEDLH 435 (484)
T ss_pred HHHHHHHHH---------CCCeEEEe--cCCCChhhhc
Confidence 222222211 24677766 79999 6553
No 458
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.71 E-value=0.013 Score=50.11 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=55.4
Q ss_pred CcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccceEEEEecccCCcccccCCCCcEEEe--ccCCCCCCCCeE
Q 005218 363 PAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIE--GLKGLPMAGDDI 440 (708)
Q Consensus 363 p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~~~~~~Gd~~ 440 (708)
|....++..+.-..+. ++.|.|..|++++|..+ -|...|+|++|+ .+++++++|.+|+-|.|. |...+ ..||.+
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l-~G~~iG~I~sIe-~~~k~v~~A~~G~eVai~Ieg~~~i-~eGDiL 79 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL-DGRKIGRIKSIE-DNGKNVDEAKKGDEVAISIEGPTQI-KEGDIL 79 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE-CSSCEEEEEEEE-ETTEEESEEETT-EEEEEEET--TB--TT-EE
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc-CCEEEEEEEEeE-ECCcCccccCCCCEEEEEEeCCccC-CCCCEE
Confidence 5555677777777777 66779999999999999 666789999999 578999999999988764 54433 567776
Q ss_pred EE
Q 005218 441 IV 442 (708)
Q Consensus 441 ~~ 442 (708)
.+
T Consensus 80 yV 81 (81)
T PF14578_consen 80 YV 81 (81)
T ss_dssp EE
T ss_pred eC
Confidence 53
No 459
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.68 E-value=0.013 Score=63.48 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=62.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc----cc--ccccCceEEe------eeEEEEEecC--------------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS----LV--AKEAGGITQH------MGAFVVGMST-------------------- 235 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~----~~--~~~~~gtT~d------i~~~~v~~~~-------------------- 235 (708)
+-|..+|.|--|+|||||+|+|+... .+ .++.+.+..| .....+.+.+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 45788999999999999999997542 11 1233222111 0011122211
Q ss_pred -------CeeEEEeeCCCcchhhhhhhc--------ccccccEEEEEEEccCCCChh--HHHHHHHhhhcCCCEEEEEeC
Q 005218 236 -------GASITFLDTPGHAAFSAMRKR--------GAAVTDIVVLVVAADDGVMPQ--TLEAIAHANAANVPIVVAINK 298 (708)
Q Consensus 236 -------g~~v~liDTpG~~~f~~~~~~--------~~~~aDivllVvDa~~g~~~q--~~~~l~~l~~~~~piIvViNK 298 (708)
.....++.|.|..+-...... ..-.-|.++.|+|+.+..... ......++.. -=+|++||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~IvlnK 159 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADRILLTK 159 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCEEEEec
Confidence 245688999997544332221 112357899999997632111 1111122322 23789999
Q ss_pred CCCCC
Q 005218 299 CDKPA 303 (708)
Q Consensus 299 ~Dl~~ 303 (708)
+|+.+
T Consensus 160 ~Dl~~ 164 (318)
T PRK11537 160 TDVAG 164 (318)
T ss_pred cccCC
Confidence 99975
No 460
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=96.68 E-value=0.012 Score=65.89 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=57.6
Q ss_pred EEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcccCCCCCCCEEEE
Q 005218 620 AGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQC 686 (708)
Q Consensus 620 aGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie~ 686 (708)
.|.+|..|.++.|+.+.++..+.. .+|+||+.++.+|+++..|+.+|+.+.+..+++.||++-.
T Consensus 235 ~~G~v~~G~l~~gd~v~i~P~~~~---~~VksI~~~~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~ 298 (406)
T TIGR02034 235 YAGTIASGSVHVGDEVVVLPSGRS---SRVARIVTFDGDLEQARAGQAVTLTLDDEIDISRGDLLAA 298 (406)
T ss_pred EEEEEecceeecCCEEEEeCCCcE---EEEEEEEECCcccCEeCCCCEEEEEECCccccCCccEEEc
Confidence 466899999999999998887643 7999999999999999999999999998889999998844
No 461
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.60 E-value=0.075 Score=60.75 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=109.1
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCC--CCCHhhHHhHHhcC--CEEEEeCCCCCc-----hhHH----HH---
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVG--SVTQSDVDLAQACG--ACIVGFNVKSPP-----TSVS----QA--- 557 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG--~it~sDv~~A~~~~--a~Il~Fnv~~~~-----~~~~----~~--- 557 (708)
-|+-|.-.=+.+.+..+..-++-+=|+.+.-| +-|.....++...+ .+|+..|= ++. +... ++
T Consensus 112 iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNK-iD~~~~~~~~~~~i~~~l~~~ 190 (474)
T PRK05124 112 ADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNK-MDLVDYSEEVFERIREDYLTF 190 (474)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEe-eccccchhHHHHHHHHHHHHH
Confidence 68888543344555566666777888887655 45666777777665 34555553 221 1111 11
Q ss_pred HHHc----CCeEEEcc-----hhhhhH--------HHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEE
Q 005218 558 ATQA----GIKILMHS-----IIYHLL--------DDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIA 620 (708)
Q Consensus 558 a~~~----~V~i~~~~-----iIY~L~--------d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~ia 620 (708)
.+.. .+.++.-+ -|..+- ..+.++|...-+|.....-.-++.|..+++.... ....
T Consensus 191 ~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~-------~~g~ 263 (474)
T PRK05124 191 AEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLD-------FRGY 263 (474)
T ss_pred HHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCc-------ccce
Confidence 1111 23333322 221211 1233344443333222222223444455442211 1124
Q ss_pred EEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcccCCCCCCCEEEE
Q 005218 621 GCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQC 686 (708)
Q Consensus 621 Gc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie~ 686 (708)
+-+|.+|.++.|..+.+...|.. .+|+||+.+..+|+++..|+.|+|.+.+..+++.||+|-.
T Consensus 264 ~G~V~sG~l~~Gd~v~i~P~~~~---~~VksI~~~~~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~ 326 (474)
T PRK05124 264 AGTLASGVVKVGDRVKVLPSGKE---SNVARIVTFDGDLEEAFAGEAITLVLEDEIDISRGDLLVA 326 (474)
T ss_pred EEEEEeEEEecCCEEEEecCCce---EEEEEEEEcCccccCcCCCCEEEEEeCCccccCCccEEEC
Confidence 55899999999999999987754 6999999999999999999999999998889999999854
No 462
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.0022 Score=68.00 Aligned_cols=153 Identities=14% Similarity=0.247 Sum_probs=106.7
Q ss_pred ccEEEEecccccHH-------HHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCchhHHHHHHH
Q 005218 488 MPVIVKADVQGTVQ-------AVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQ 560 (708)
Q Consensus 488 ~~~iiKad~~GslE-------Ai~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~~~~~~~a~~ 560 (708)
+-||=|+|..--.| .+++.|+.++-+.-.++|+..+ .+.|.--+ .|++
T Consensus 174 vvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GS-----------------AL~ALeg~-~pei------- 228 (449)
T KOG0460|consen 174 VVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGS-----------------ALCALEGR-QPEI------- 228 (449)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecc-----------------hhhhhcCC-Cccc-------
Confidence 34566777664333 2477788887776667776533 23333322 3333
Q ss_pred cCCeEEEcchhhhhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeC
Q 005218 561 AGIKILMHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRS 640 (708)
Q Consensus 561 ~~V~i~~~~iIY~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~ 640 (708)
.-+-|++|+|.+..|+- .|++.....=-.-|..+|.++++| +|+=-++..|.+|+|..+.++=.
T Consensus 229 ------g~~aI~kLldavDsyip---~P~R~~~~pFl~pie~vfsI~GRG-------TVvtGrlERG~lKkG~e~eivG~ 292 (449)
T KOG0460|consen 229 ------GLEAIEKLLDAVDSYIP---TPERDLDKPFLLPIEDVFSIPGRG-------TVVTGRLERGVLKKGDEVEIVGH 292 (449)
T ss_pred ------cHHHHHHHHHHHhccCC---CcccccCCCceeehhheeeecCCc-------eEEEEEEeecccccCCEEEEecc
Confidence 12669999998876652 122222222223455799999998 89999999999999999999987
Q ss_pred CeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCC
Q 005218 641 GEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGD 682 (708)
Q Consensus 641 ~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD 682 (708)
++.+ +-.+..++-|++.++++..|+.||..+.+. .|++-|=
T Consensus 293 ~~~l-kttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGm 335 (449)
T KOG0460|consen 293 NKTL-KTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGM 335 (449)
T ss_pred Ccce-eeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhccc
Confidence 7774 668999999999999999999999999884 2444443
No 463
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.57 E-value=0.019 Score=60.56 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=74.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc------cc-ccccC------------ceEEeeeEEEEEe-----------c--C
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS------LV-AKEAG------------GITQHMGAFVVGM-----------S--T 235 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~------~~-~~~~~------------gtT~di~~~~v~~-----------~--~ 235 (708)
++.+++++|++|+|||||+..|...- .. ++..+ ....++....... . .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 66899999999999999998874321 10 00000 0000111111000 0 2
Q ss_pred CeeEEEeeCCCcchhhh--h--hhc--ccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchh
Q 005218 236 GASITFLDTPGHAAFSA--M--RKR--GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV 309 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~--~--~~~--~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~ 309 (708)
++.+.|+||||.-.... + ... .....|-++||+|++... .+..+.++.....++ -=++++|.|-.. ..-.+
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~~-~~~I~TKlDet~-~~G~~ 230 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDETA-SSGEL 230 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCCC-CEEEEEeecCCC-CccHH
Confidence 57899999999543221 1 111 123457789999987421 223344444433222 456889999753 22222
Q ss_pred hhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 310 KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 310 ~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
....... ..|+.+++ +|+++++
T Consensus 231 l~~~~~~---------~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 231 LKIPAVS---------SAPIVLMT--DGQDVKK 252 (270)
T ss_pred HHHHHHH---------CcCEEEEe--CCCCCCc
Confidence 2222111 24666665 7898874
No 464
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.55 E-value=0.092 Score=61.75 Aligned_cols=182 Identities=20% Similarity=0.227 Sum_probs=109.1
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCC--CCHhhHHhHHhcCCEEEEeCCCCCch------hHHHHHHHcCCe-
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGS--VTQSDVDLAQACGACIVGFNVKSPPT------SVSQAATQAGIK- 564 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~--it~sDv~~A~~~~a~Il~Fnv~~~~~------~~~~~a~~~~V~- 564 (708)
-|+-|..+-...+...+..-+.-+=|+.+.-|. -|...+.++...+-.++-|--|++.. ...++++..++.
T Consensus 79 iDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 79 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDA 158 (600)
T ss_pred EECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCc
Confidence 488888776655555555555667777776552 33344455555554444443344421 113344434442
Q ss_pred --EE-----EcchhhhhHHHHHHHHhhcCCCc-eeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEE
Q 005218 565 --IL-----MHSIIYHLLDDFGNLVVDKAPGT-FETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMR 636 (708)
Q Consensus 565 --i~-----~~~iIY~L~d~~~~~~~~~~~~~-~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~r 636 (708)
++ +..-|.+|++.+. ..+|+. ....-.=.|.|-.++.-+.+| .++-++|.+|.++.|..+.
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~----~~lp~P~~~~~~pl~~~Vfd~~~d~~~G-------~v~~~rV~sG~Lk~Gd~i~ 227 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIV----ERIPPPKGDPDAPLKALIFDSWYDNYRG-------VVVLVRVVDGTLKKGDKIK 227 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHH----HhCccccCCCCCCceEEEEEEEecCCCc-------eEEEEEEEcCEEecCCEEE
Confidence 22 2233555655554 334422 111111234444555545555 8999999999999999999
Q ss_pred EeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEc---ccCCCCCCCEEEEE
Q 005218 637 LLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIR---DWHDFQVGDIIQCL 687 (708)
Q Consensus 637 v~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~---~~~~~~~gD~ie~y 687 (708)
++..|..-..+.|..+.-....++++..|+ +|..+. +..+++.||.|-.-
T Consensus 228 ~~~~~~~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~~~ 280 (600)
T PRK05433 228 MMSTGKEYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTITLA 280 (600)
T ss_pred EecCCceEEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEECC
Confidence 999887644455554444678999999999 776665 45789999999443
No 465
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.079 Score=51.18 Aligned_cols=140 Identities=14% Similarity=0.226 Sum_probs=73.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCc-eEEeeeEEEEEecCC--eeEEEeeCC-Cc--------------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGG-ITQHMGAFVVGMSTG--ASITFLDTP-GH-------------- 247 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~g-tT~di~~~~v~~~~g--~~v~liDTp-G~-------------- 247 (708)
+...+|.|.|+||+|||||+..+...-... -..+| .|..+ .- +| .-+.++|.+ |-
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV-----R~-gGkR~GF~Ivdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV-----RE-GGKRIGFKIVDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee-----ec-CCeEeeeEEEEccCCceEEEEEcCCCCccc
Confidence 345789999999999999998875322111 01111 12111 11 11 224445544 21
Q ss_pred -------chh----hhhhhcccccccEEEEEEEccCCC---ChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhh
Q 005218 248 -------AAF----SAMRKRGAAVTDIVVLVVAADDGV---MPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQL 313 (708)
Q Consensus 248 -------~~f----~~~~~~~~~~aDivllVvDa~~g~---~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l 313 (708)
+.+ .....+++..||+++ +|---+. +..-.+.+..+...+.|+|.++.+-+. ..+.+.+
T Consensus 77 GkY~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr-----~P~v~~i 149 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR-----HPLVQRI 149 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC-----ChHHHHh
Confidence 011 122234556678776 4532222 233445566667788999999988765 1233333
Q ss_pred hhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 314 GAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 314 ~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
...+ . -+++ .|-.|-+.++..|...+
T Consensus 150 k~~~--------~-v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 150 KKLG--------G-VYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred hhcC--------C-EEEE---EccchhhHHHHHHHHHh
Confidence 3221 1 1222 56677777777776643
No 466
>PRK10867 signal recognition particle protein; Provisional
Probab=96.50 E-value=0.0067 Score=68.10 Aligned_cols=64 Identities=25% Similarity=0.331 Sum_probs=36.6
Q ss_pred CCeeEEEeeCCCcchhhhh-h---h--cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCC
Q 005218 235 TGASITFLDTPGHAAFSAM-R---K--RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDK 301 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~-~---~--~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl 301 (708)
.++.+.|+||||.-..... . . ...-..|-+++|+|+..+ ....+....... .++ .=+++||.|-
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDG 252 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 4578999999995332111 1 1 112356778999998653 223333333322 233 4567799996
No 467
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.0045 Score=76.34 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=67.6
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcCcccccc--------cCceEEeeeEEEEEecCCeeEEEeeCCC----cc----
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKE--------AGGITQHMGAFVVGMSTGASITFLDTPG----HA---- 248 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~--------~~gtT~di~~~~v~~~~g~~v~liDTpG----~~---- 248 (708)
.+..-|=-.|+|+||+||||++..- +.++...+ .+| |++.. +--+..-.+|||+| |.
T Consensus 121 ~lyeLPWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd-----wwf~deaVlIDtaGry~~q~s~~~ 193 (1188)
T COG3523 121 YLYELPWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD-----WWFTDEAVLIDTAGRYITQDSADE 193 (1188)
T ss_pred hhhcCCceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC-----cccccceEEEcCCcceecccCcch
Confidence 4445567789999999999998653 22232211 122 44332 22456788999999 21
Q ss_pred h-------hhhh--hhcccccccEEEEEEEccCCC--ChhHH-HHH----------HHhhhcCCCEEEEEeCCCCCC
Q 005218 249 A-------FSAM--RKRGAAVTDIVVLVVAADDGV--MPQTL-EAI----------AHANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 249 ~-------f~~~--~~~~~~~aDivllVvDa~~g~--~~q~~-~~l----------~~l~~~~~piIvViNK~Dl~~ 303 (708)
. |..+ ..+..+--|+||+.+|+.+-. .++.. .+. ........|+.+++||+|+..
T Consensus 194 ~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 194 VDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred hhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 0 1111 113456789999999988722 22222 111 111235789999999999964
No 468
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.45 E-value=0.0068 Score=68.04 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=37.6
Q ss_pred CCeeEEEeeCCCcchhhhhhh------cccccccEEEEEEEccCCCChhHHHHHHHhh-hcCCCEEEEEeCCCC
Q 005218 235 TGASITFLDTPGHAAFSAMRK------RGAAVTDIVVLVVAADDGVMPQTLEAIAHAN-AANVPIVVAINKCDK 301 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~------~~~~~aDivllVvDa~~g~~~q~~~~l~~l~-~~~~piIvViNK~Dl 301 (708)
.++.+.|+||||.-....... ...-..|-++||+|+..+ ....+...... ..++ .=+++||+|-
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-~giIlTKlD~ 251 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-TGVVLTKLDG 251 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-CEEEEeCccC
Confidence 457899999999533221111 123457889999998753 23333333332 1222 4567999996
No 469
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.0079 Score=71.45 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=75.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-c--ccCceEEe------------------eeEEEE-----------Eec
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-K--EAGGITQH------------------MGAFVV-----------GMS 234 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~--~~~gtT~d------------------i~~~~v-----------~~~ 234 (708)
.++..++++|+.|+||||++..|....... . ...-+|.| +..... ..
T Consensus 183 ~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~- 261 (767)
T PRK14723 183 AQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL- 261 (767)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-
Confidence 356789999999999999999986432100 0 00000000 000000 01
Q ss_pred CCeeEEEeeCCCcchhh----hhhh--cccccccEEEEEEEccCCCChhHHH-HHHHhhhc-C-CCEEEEEeCCCCCCCC
Q 005218 235 TGASITFLDTPGHAAFS----AMRK--RGAAVTDIVVLVVAADDGVMPQTLE-AIAHANAA-N-VPIVVAINKCDKPAAD 305 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~----~~~~--~~~~~aDivllVvDa~~g~~~q~~~-~l~~l~~~-~-~piIvViNK~Dl~~~~ 305 (708)
.++.+.||||||..... .... ......+-++||+|++.. .+++. .+...... . -+-=++++|.|-.. .
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~-~ 338 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEAT-H 338 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCCC-C
Confidence 45689999999932211 1111 112345678999999752 33333 33333221 1 12356799999743 2
Q ss_pred cchhhhhhhhcccchhccCCcceEEEEeeecCCCc-hhHH
Q 005218 306 PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL-DDLE 344 (708)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI-~~L~ 344 (708)
.-.+....... ..|+.+++ +|++| ++|.
T Consensus 339 ~G~iL~i~~~~---------~lPI~yit--~GQ~VPdDL~ 367 (767)
T PRK14723 339 LGPALDTVIRH---------RLPVHYVS--TGQKVPEHLE 367 (767)
T ss_pred ccHHHHHHHHH---------CCCeEEEe--cCCCChhhcc
Confidence 22222222211 24777776 79999 6664
No 470
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.0074 Score=67.11 Aligned_cols=138 Identities=15% Similarity=0.137 Sum_probs=73.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc-------ccc--cc---------------cCceEEeeeEEEEE-e--------c
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS-------LVA--KE---------------AGGITQHMGAFVVG-M--------S 234 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~-------~~~--~~---------------~~gtT~di~~~~v~-~--------~ 234 (708)
++..++++|++|+||||++..|.... +.. .+ ..+. ...... . .
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgv----p~~~~~~~~~l~~~l~~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGM----PFYPVKDIKKFKETLAR 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCC----CeeehHHHHHHHHHHHh
Confidence 45679999999999999999986421 110 00 0111 000000 0 1
Q ss_pred CCeeEEEeeCCCcchhh--hh--hhccc-----ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCC
Q 005218 235 TGASITFLDTPGHAAFS--AM--RKRGA-----AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD 305 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~--~~--~~~~~-----~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~ 305 (708)
.++.+.|+||||..... .+ +...+ ....-.+||+|++.+. .+..+.+......+. -=++++|.|-.. .
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~~~~f~~~~~-~glIlTKLDEt~-~ 374 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAYESLNY-RRILLTKLDEAD-F 374 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHHHHHhcCCCC-CEEEEEcccCCC-C
Confidence 46789999999964221 11 11111 1234688999998642 222333333332332 456889999742 2
Q ss_pred cchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 306 PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
.-.+....... ..|+.+++ +|+++.+=
T Consensus 375 ~G~il~i~~~~---------~lPI~ylt--~GQ~VPeD 401 (432)
T PRK12724 375 LGSFLELADTY---------SKSFTYLS--VGQEVPFD 401 (432)
T ss_pred ccHHHHHHHHH---------CCCEEEEe--cCCCCCCC
Confidence 22222222211 24666665 68888643
No 471
>PRK13695 putative NTPase; Provisional
Probab=96.38 E-value=0.011 Score=57.86 Aligned_cols=76 Identities=12% Similarity=0.238 Sum_probs=47.2
Q ss_pred ccccccEEEEEEE---ccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEe
Q 005218 257 GAAVTDIVVLVVA---ADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 257 ~~~~aDivllVvD---a~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vS 333 (708)
.+..+|+ +++| ..+....++.+.+..+...+.|+|++.||.... .....+..+ .+..++.+
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~~-----~~~~~i~~~--------~~~~i~~~- 156 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSVH-----PFVQEIKSR--------PGGRVYEL- 156 (174)
T ss_pred ccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhhH-----HHHHHHhcc--------CCcEEEEE-
Confidence 4567777 5778 555556677788877777889999999985431 111222111 12345555
Q ss_pred eecCCCchhHHHHHHHH
Q 005218 334 AVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~ 350 (708)
|.+|=+++...+.+.
T Consensus 157 --~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 157 --TPENRDSLPFEILNR 171 (174)
T ss_pred --cchhhhhHHHHHHHH
Confidence 566777887777653
No 472
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.025 Score=62.02 Aligned_cols=104 Identities=18% Similarity=0.355 Sum_probs=80.4
Q ss_pred hhhhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEe
Q 005218 571 IYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCI 650 (708)
Q Consensus 571 IY~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~ 650 (708)
-+.|++.+. ..-+|.......=+.-|..++.+++.| ....| +|..|.|+.|.++.++-.+.. |++.
T Consensus 211 GpTLleaLd----~~~~p~~~~d~Plr~pI~~v~~i~~~g------tv~vG-rVEsG~i~~g~~v~~~p~~~~---~evk 276 (428)
T COG5256 211 GPTLLEALD----QLEPPERPLDKPLRLPIQDVYSISGIG------TVPVG-RVESGVIKPGQKVTFMPAGVV---GEVK 276 (428)
T ss_pred CChHHHHHh----ccCCCCCCCCCCeEeEeeeEEEecCCc------eEEEE-EEeeeeeccCCEEEEecCcce---EEEe
Confidence 566666654 233332222222234567788888877 36677 999999999999999988844 8999
Q ss_pred eeeccccccceeccCCeEEEEEccc--CCCCCCCEEEEEE
Q 005218 651 SLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQCLE 688 (708)
Q Consensus 651 slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie~y~ 688 (708)
|+....+++..+..|+.||..+.+- +|++.||++-..+
T Consensus 277 sie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 277 SIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred eeeecccccccCCCCCeEEEEecCCchhccCCccEeccCC
Confidence 9999999999999999999999984 5899999998775
No 473
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.28 E-value=0.15 Score=60.57 Aligned_cols=181 Identities=17% Similarity=0.157 Sum_probs=109.6
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCC--CCCHhhHHhHHhcC--CEEEEeCCCCC-----ch----hHHHH---
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVG--SVTQSDVDLAQACG--ACIVGFNVKSP-----PT----SVSQA--- 557 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG--~it~sDv~~A~~~~--a~Il~Fnv~~~-----~~----~~~~~--- 557 (708)
-|+-|--+=+...+..+..-++-+=|+.+.-| +-|.....++...+ .+|+..|= .+ ++ +..++
T Consensus 109 iDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK-~D~~~~~~~~~~~i~~~i~~~ 187 (632)
T PRK05506 109 ADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNK-MDLVDYDQEVFDEIVADYRAF 187 (632)
T ss_pred EECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEe-cccccchhHHHHHHHHHHHHH
Confidence 68888655455566666666677778887655 45566677777665 34556553 22 11 10111
Q ss_pred HHHcCC---eEEEcc-----hh---------hhhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEE
Q 005218 558 ATQAGI---KILMHS-----II---------YHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIA 620 (708)
Q Consensus 558 a~~~~V---~i~~~~-----iI---------Y~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~ia 620 (708)
.+..+. .++.-+ -| |+- ..+.+.|....++.....-.=+..|..+|+.+... ...
T Consensus 188 ~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g-~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~~~~~~-------~g~ 259 (632)
T PRK05506 188 AAKLGLHDVTFIPISALKGDNVVTRSARMPWYEG-PSLLEHLETVEIASDRNLKDFRFPVQYVNRPNLDF-------RGF 259 (632)
T ss_pred HHHcCCCCccEEEEecccCCCccccccCCCcccH-hHHHHHHhcCCCCCCcCCCCceeeEEEEEecCCCc-------eEE
Confidence 122232 222211 11 211 12334444443332211111223444555432111 224
Q ss_pred EEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcccCCCCCCCEEEE
Q 005218 621 GCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQC 686 (708)
Q Consensus 621 Gc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie~ 686 (708)
|-+|..|.++.|+.+.++..+.. .+|+||+.+++.|+++..|+.|||.+.+..+++.||+|-.
T Consensus 260 ~G~v~~G~l~~gd~v~i~P~~~~---~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~ 322 (632)
T PRK05506 260 AGTVASGVVRPGDEVVVLPSGKT---SRVKRIVTPDGDLDEAFAGQAVTLTLADEIDISRGDMLAR 322 (632)
T ss_pred EEEEecceeecCCEEEEcCCCce---EEEEEEEECCceeCEEcCCCeEEEEecCccccCCccEEec
Confidence 56899999999999999987754 7999999999999999999999999998889999999853
No 474
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.27 E-value=0.27 Score=57.74 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=63.9
Q ss_pred ceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeecc----ccccceeccCCeEEEEE
Q 005218 597 EAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKRE----KQDVDTVAKGNECGLVI 672 (708)
Q Consensus 597 ~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~----k~~V~ev~kG~ecgi~~ 672 (708)
.+.|-++|..+..| .++-++|.+|+++.|..+.+.+.+.....++|.+|..+ +.+|.++..|+-|+|.
T Consensus 202 ~~~V~~i~~d~~~G-------rv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~- 273 (594)
T TIGR01394 202 QMLVTNLDYDEYLG-------RIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA- 273 (594)
T ss_pred EEEEEEEEeeCCCc-------eEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe-
Confidence 35555666656555 68888999999999999999985433345788888864 7899999999999875
Q ss_pred cccCCCCCCCEEE
Q 005218 673 RDWHDFQVGDIIQ 685 (708)
Q Consensus 673 ~~~~~~~~gD~ie 685 (708)
+..++..||.|-
T Consensus 274 -gl~~i~~Gdtl~ 285 (594)
T TIGR01394 274 -GLEDINIGETIA 285 (594)
T ss_pred -CCcccCCCCEEe
Confidence 888999999994
No 475
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.27 E-value=0.023 Score=51.29 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=54.7
Q ss_pred cCCCcceeEEEEEeeC--------CCCcEEEEEEEeeEEcCCCEEEEcc--------------ccceEEEEecccCCccc
Q 005218 360 VDGPAQAYVVEARLDK--------GRGPLTTAIVKAGTLVCGQHVVVGH--------------EWGRIRAIRDMVGKSTD 417 (708)
Q Consensus 360 ~~~p~~~~V~e~~~~~--------~~G~v~~~~V~~G~L~~gd~v~~g~--------------~~~kVr~i~~~~~~~v~ 417 (708)
.+.|+.++|.++|... .+|.|+.+.+.+|.|+.||.|-+-+ ...+|.+|+ ..++.++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~-~~~~~l~ 80 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLK-AENNDLQ 80 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEE-ecCcccc
Confidence 3567888899888766 8899999999999999999986642 234577877 5677899
Q ss_pred ccCCCCcEEE
Q 005218 418 KARPAMPVEI 427 (708)
Q Consensus 418 ~a~~g~~V~i 427 (708)
+|.||..+.|
T Consensus 81 ~a~pGgliGv 90 (113)
T cd03688 81 EAVPGGLIGV 90 (113)
T ss_pred EEeCCCeEEE
Confidence 9999998887
No 476
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.25 E-value=0.021 Score=61.85 Aligned_cols=145 Identities=26% Similarity=0.289 Sum_probs=78.5
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcc----c--ccccCceEEe-------eeEEEEEecCC--------------------
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSL----V--AKEAGGITQH-------MGAFVVGMSTG-------------------- 236 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~----~--~~~~~gtT~d-------i~~~~v~~~~g-------------------- 236 (708)
|..+|-|-=|+|||||+|.|+...- + +++.+-+..| .....+++.+|
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 4667888899999999999975432 2 2444433333 11122233222
Q ss_pred ---eeEEEeeCCCcchhhhhhh--------cccccccEEEEEEEccCCCChhH---HHHHHHhhhcCCCEEEEEeCCCCC
Q 005218 237 ---ASITFLDTPGHAAFSAMRK--------RGAAVTDIVVLVVAADDGVMPQT---LEAIAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 237 ---~~v~liDTpG~~~f~~~~~--------~~~~~aDivllVvDa~~g~~~q~---~~~l~~l~~~~~piIvViNK~Dl~ 302 (708)
....+|-|-|...=..... ...-.-|.++-|+|+.+-..... .....++. .-=++++||.|+.
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEEEecccCC
Confidence 3567888888543221111 12335688999999987433221 11222332 2348999999997
Q ss_pred CCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 303 AADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
+.. . ...+.. .+.......+++.+|. .+....+++
T Consensus 159 ~~~--~-l~~l~~---~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAE--E-LEALEA---RLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHH--H-HHHHHH---HHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 643 1 111111 1122334467888876 344444443
No 477
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.16 E-value=0.039 Score=49.92 Aligned_cols=74 Identities=18% Similarity=0.311 Sum_probs=57.4
Q ss_pred ceeEeeEEEeCCCCCC-CCCCceEEEEEEEecEEeeCCeEEEee------CCeEEE---EEEEeeeeccccccceeccCC
Q 005218 597 EAEVLNIFELKGRSKA-KGDDVKIAGCRVIDGCFTRSSTMRLLR------SGEVVF---EGSCISLKREKQDVDTVAKGN 666 (708)
Q Consensus 597 ~a~v~~vf~~~~~~~~-~~~~~~iaGc~V~~G~i~~~~~~rv~R------~~~~i~---~g~i~slk~~k~~V~ev~kG~ 666 (708)
.+.|...|.+++.+.. ......|+|-.+..|+++.|+.+.+.- +|++-| .-+|.||+-++++++++..|.
T Consensus 7 ~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~a~pGg 86 (113)
T cd03688 7 RMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQEAVPGG 86 (113)
T ss_pred eEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccEEeCCC
Confidence 3567889999855431 122258999999999999999986651 233333 459999999999999999999
Q ss_pred eEEE
Q 005218 667 ECGL 670 (708)
Q Consensus 667 ecgi 670 (708)
-+||
T Consensus 87 liGv 90 (113)
T cd03688 87 LIGV 90 (113)
T ss_pred eEEE
Confidence 9999
No 478
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.03 E-value=0.049 Score=59.59 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+-|..++.|--|+|||||+|+|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4567899999999999999999753
No 479
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.03 E-value=0.015 Score=57.05 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=49.5
Q ss_pred CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCC
Q 005218 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~ 303 (708)
..+.+.++|||+.... .....+..+|.+++++..+..........++.+...+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCc
Confidence 5678999999974322 233456789999999988764444555666666777889999999999743
No 480
>PRK01889 GTPase RsgA; Reviewed
Probab=96.02 E-value=0.0065 Score=66.83 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=38.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccc-ccc-------CceEEeeeEEEEEecCCeeEEEeeCCCcchhh
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEA-------GGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~-------~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~ 251 (708)
+..+.+++++|.+|+|||||+|.|.+..... ... ..+|...... .+..+ ..++||||...+.
T Consensus 192 L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~--~l~~~--~~l~DtpG~~~~~ 261 (356)
T PRK01889 192 LSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELH--PLPSG--GLLIDTPGMRELQ 261 (356)
T ss_pred hhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEE--EecCC--CeecCCCchhhhc
Confidence 4467799999999999999999998654321 111 1233222212 22122 3588999976543
No 481
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.02 E-value=0.037 Score=60.95 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=31.6
Q ss_pred HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeec
Q 005218 278 TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 278 ~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
..+.+..++..++|+|+++|=.+=.......+..++.+ .+ ++|+++++|..
T Consensus 169 EervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~e------kY--~vpVlpvnc~~ 219 (492)
T PF09547_consen 169 EERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEE------KY--DVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHH------Hh--CCcEEEeehHH
Confidence 34566778888999999999877422111222333322 22 46889988754
No 482
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=95.99 E-value=0.062 Score=45.94 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=53.2
Q ss_pred eEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeecc-ccccceeccCCeEEEEEcccCCCCCCCEEE
Q 005218 618 KIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKRE-KQDVDTVAKGNECGLVIRDWHDFQVGDIIQ 685 (708)
Q Consensus 618 ~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~-k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie 685 (708)
.++=|+|.+|.+++|+.+.+++.+...-.++|--++-. +.+++++..|+=|+| .+.+++.+||.|-
T Consensus 16 ~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~~~~~~Gdtl~ 82 (83)
T cd04088 16 KLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGLKDTATGDTLC 82 (83)
T ss_pred eEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECCCCCccCCEee
Confidence 68889999999999999999987654333455555554 789999999998877 5788899999873
No 483
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=95.97 E-value=0.064 Score=45.94 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=53.6
Q ss_pred eEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeee-ccccccceeccCCeEEEEEcccCCCCCCCEE
Q 005218 618 KIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLK-REKQDVDTVAKGNECGLVIRDWHDFQVGDII 684 (708)
Q Consensus 618 ~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk-~~k~~V~ev~kG~ecgi~~~~~~~~~~gD~i 684 (708)
.++=|+|.+|.+++|+.+.+.+.++..-.++|-.+. ..+.+++++..|+=|+| .+.+++.+||.|
T Consensus 16 ~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~~~~~Gdtl 81 (83)
T cd04092 16 PLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGLKQTRTGDTL 81 (83)
T ss_pred eEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECCCCcccCCEE
Confidence 688899999999999999988877544345666665 47789999999997775 688899999987
No 484
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.018 Score=58.68 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=68.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCccc-----ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh---hhcccccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLV-----AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM---RKRGAAVT 261 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~-----~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~---~~~~~~~a 261 (708)
|+|.+||+--+||||+-.......-+ ......+|++-... .-..+.+||.||+-.+..- ...-++.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~-----sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~ 102 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISN-----SFINFQVWDFPGQMDFFDPSFDYEMIFRGV 102 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhh-----hhcceEEeecCCccccCCCccCHHHHHhcc
Confidence 66999999999999988776543322 11222344443221 2246889999998765432 22346889
Q ss_pred cEEEEEEEccCCCChhHHHHHHH-hh----hcCCCEEEEEeCCCCCC
Q 005218 262 DIVVLVVAADDGVMPQTLEAIAH-AN----AANVPIVVAINKCDKPA 303 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~l~~-l~----~~~~piIvViNK~Dl~~ 303 (708)
.+.++|+|+.+...+....+... .+ ..++.+=|.+.|.|-..
T Consensus 103 gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 103 GALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred CeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 99999999987433222111111 11 24566889999999754
No 485
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.89 E-value=0.039 Score=58.62 Aligned_cols=87 Identities=29% Similarity=0.273 Sum_probs=56.1
Q ss_pred ccccccEEEEEEEccCCCC-hhH-HHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEee
Q 005218 257 GAAVTDIVVLVVAADDGVM-PQT-LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 257 ~~~~aDivllVvDa~~g~~-~q~-~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSA 334 (708)
-+.+.|-+++|+.+.++.. ..- ...+-.+...++..++++||+||.+.......+.+. ....+ .++++.+|+
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~----~y~~~--gy~v~~~s~ 149 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLR----EYEDI--GYPVLFVSA 149 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHH----HHHhC--CeeEEEecC
Confidence 3455777888887776433 222 234445556789899999999997543222111111 11112 368999999
Q ss_pred ecCCCchhHHHHHHH
Q 005218 335 VKKTGLDDLEVALLL 349 (708)
Q Consensus 335 ktg~GI~~L~~~I~~ 349 (708)
+++.|+++|.+.+..
T Consensus 150 ~~~~~~~~l~~~l~~ 164 (301)
T COG1162 150 KNGDGLEELAELLAG 164 (301)
T ss_pred cCcccHHHHHHHhcC
Confidence 999999999887754
No 486
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.83 E-value=0.035 Score=54.01 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=43.9
Q ss_pred eEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCC
Q 005218 238 SITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKP 302 (708)
Q Consensus 238 ~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~ 302 (708)
.+.++|||+.... .....+..+|.+|++++.+..........+..+...+.+ ..+++|++|..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 7999999985433 233456899999999988765444444555555555554 67899999874
No 487
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.73 E-value=0.016 Score=54.82 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=58.8
Q ss_pred EEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC
Q 005218 194 VMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG 273 (708)
Q Consensus 194 IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g 273 (708)
.-|.+|+||||+.-.|...-... .....-.|.....-. -.+.+.++|||+.. .......+..+|.+++|++.+..
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~-~~~~~~vd~D~~~~~--~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~ 79 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKL-GKRVLLLDADLGLAN--LDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPT 79 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEECCCCCCC--CCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChh
Confidence 45678999999987764321110 000000111000000 12789999999853 22334567899999999988753
Q ss_pred CChhHHHHHHHhhh--cCCCEEEEEeCCCC
Q 005218 274 VMPQTLEAIAHANA--ANVPIVVAINKCDK 301 (708)
Q Consensus 274 ~~~q~~~~l~~l~~--~~~piIvViNK~Dl 301 (708)
....+...++.+.. ...++.+++|+++.
T Consensus 80 s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 80 SITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 33333444444432 23568899999974
No 488
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.67 E-value=0.017 Score=57.05 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=57.9
Q ss_pred CEEEEEecCCCCchHHHHHhhc-----Cccc--ccccCceEEe------eeEEEEEec----------------------
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ-----TSLV--AKEAGGITQH------MGAFVVGMS---------------------- 234 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~-----~~~~--~~~~~gtT~d------i~~~~v~~~---------------------- 234 (708)
|.+.|.|-.|+|||||+++|+. .+.. ..+.+.+..| .......+.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 5688999999999999999983 1111 1222211000 000011111
Q ss_pred C--CeeEEEeeCCCcchhhhhh--h---cccccccEEEEEEEccCCCChhH--HHHHHHhhhcCCCEEEEEeCCCCCC
Q 005218 235 T--GASITFLDTPGHAAFSAMR--K---RGAAVTDIVVLVVAADDGVMPQT--LEAIAHANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 235 ~--g~~v~liDTpG~~~f~~~~--~---~~~~~aDivllVvDa~~g~~~q~--~~~l~~l~~~~~piIvViNK~Dl~~ 303 (708)
. .....|+-|.|...-..+. . ...-..+.++.|+|+.+-..... .....++. .-=++++||+|+.+
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~---~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA---FADVIVLNKIDLVS 155 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC---T-SEEEEE-GGGHH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch---hcCEEEEeccccCC
Confidence 2 3578889999965544431 1 11234678999999954111111 11122332 22378999999964
No 489
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=0.011 Score=61.09 Aligned_cols=114 Identities=18% Similarity=0.296 Sum_probs=68.4
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCccccccc----CceEEeeeEEEEEec-CCeeEEEeeCCCcch--------------
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEA----GGITQHMGAFVVGMS-TGASITFLDTPGHAA-------------- 249 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~----~gtT~di~~~~v~~~-~g~~v~liDTpG~~~-------------- 249 (708)
.++|.-+|..|-|||||++.|.+..+...+. |+.......+.+.-+ -..+++++||.|..+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 4689999999999999999999988764333 233222222222210 124789999999321
Q ss_pred ----hhhhhh------c---cc--ccccEEEEEEEccC-CCChhHHHHHHHhhhcCCCEEEEEeCCCCCC
Q 005218 250 ----FSAMRK------R---GA--AVTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 250 ----f~~~~~------~---~~--~~aDivllVvDa~~-g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~ 303 (708)
|..... + .+ ...+++++.+..+- ++..-++-.++.+. ..+.+|-++-|.|...
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHHhhhhh
Confidence 111000 1 12 34678888887653 34333444444443 3567888889999754
No 490
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.66 E-value=0.013 Score=57.71 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=33.1
Q ss_pred cEEEEEEEccCCCChhHHHHHHH--hhhcCCCEEEEEeCCCCCC
Q 005218 262 DIVVLVVAADDGVMPQTLEAIAH--ANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~l~~--l~~~~~piIvViNK~Dl~~ 303 (708)
|++++|+|+.++......+.... +...++|+|+|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 89999999998766655555555 4456789999999999953
No 491
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=95.65 E-value=0.015 Score=65.13 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=94.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVV 268 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVv 268 (708)
..+++|+|...+|||.|+.+++...+...+.+.-.+--....+.. ..+.+.+.|-+|+.+ ..+....|++|+||
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~g-qs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDG-QSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeec-cceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 368999999999999999998876665533332222222222222 456677778888533 23445689999999
Q ss_pred EccCCCChhHHHHHHHhh-----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 269 AADDGVMPQTLEAIAHAN-----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 269 Da~~g~~~q~~~~l~~l~-----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
...+-...+....+..-. ...+|+++++++ |+...+..+....... ..+......+.+++.+|.+|.++...
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtq-d~iS~~~~rv~~da~~--r~l~~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQ-DHISAKRPRVITDDRA--RQLSAQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCc-chhhcccccccchHHH--HHHHHhcCccceeecchhhhhhHHHH
Confidence 888766777766654322 235667777765 4433322222211111 11111122356899999999999999
Q ss_pred HHHHHHHHH
Q 005218 344 EVALLLQAE 352 (708)
Q Consensus 344 ~~~I~~~~~ 352 (708)
|+.+.....
T Consensus 181 f~~~~~k~i 189 (749)
T KOG0705|consen 181 FQEVAQKIV 189 (749)
T ss_pred HHHHHHHHH
Confidence 887766543
No 492
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.63 E-value=0.016 Score=62.05 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.+|..+.++|-.|+||||-+..|..
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHH
Confidence 4588899999999999999988743
No 493
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.61 E-value=0.024 Score=57.35 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=23.7
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
..++..|+|+|++|+|||||++.|....
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 3466789999999999999999997543
No 494
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.54 E-value=0.019 Score=63.90 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=57.2
Q ss_pred EEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccC--------CC---ChhHHHHHHHhhh----
Q 005218 223 TQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD--------GV---MPQTLEAIAHANA---- 287 (708)
Q Consensus 223 T~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~--------g~---~~q~~~~l~~l~~---- 287 (708)
|..+....+.+.++..+.++|+.|++.-..-|...+...+++|||++.++ .. ..+.+..+..+..
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 33344444444478899999999999988899999999999999999875 11 2234445544432
Q ss_pred cCCCEEEEEeCCCCC
Q 005218 288 ANVPIVVAINKCDKP 302 (708)
Q Consensus 288 ~~~piIvViNK~Dl~ 302 (708)
.+.|+|+++||+|+.
T Consensus 302 ~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 302 KNTPIILFLNKIDLF 316 (389)
T ss_dssp TTSEEEEEEE-HHHH
T ss_pred ccCceEEeeecHHHH
Confidence 378999999999984
No 495
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.46 E-value=0.034 Score=49.33 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=44.7
Q ss_pred EEEEe-cCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEc
Q 005218 192 VTVMG-HVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (708)
Q Consensus 192 V~IvG-~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa 270 (708)
|++.| ..|+||||+.-.|...-.. .|. ....+..+..+.+.++|||+.... .....+..+|.++++++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~----~~~----~vl~~d~d~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR----RGK----RVLLIDLDPQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh----CCC----cEEEEeCCCCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 56777 6899999998877543221 111 111112223378999999995432 223556789999999987
Q ss_pred cC
Q 005218 271 DD 272 (708)
Q Consensus 271 ~~ 272 (708)
+.
T Consensus 72 ~~ 73 (104)
T cd02042 72 SP 73 (104)
T ss_pred CH
Confidence 65
No 496
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.42 E-value=0.026 Score=53.32 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=34.2
Q ss_pred EEEEecCCCCchHHHHHhhcCccc--ccccCceEEeeeEEEEEecCCeeEEEeeCCC
Q 005218 192 VTVMGHVDHGKTSLLDALRQTSLV--AKEAGGITQHMGAFVVGMSTGASITFLDTPG 246 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~~~~--~~~~~gtT~di~~~~v~~~~g~~v~liDTpG 246 (708)
|+|+|++|+|||||++.|...... ....+.+|+...... . +|..+.++|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~-~g~~~~~v~~~~ 55 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--V-DGVDYHFVSKEE 55 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--c-CCceeEEeCHHH
Confidence 789999999999999999865211 123334555443222 2 667788887544
No 497
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.011 Score=58.46 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=40.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDT 244 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDT 244 (708)
+|.-+++.|++|+|||||+.+|+...-..-....|||......+ +|..+.|++.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv---~G~dY~Fvs~ 56 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEV---DGVDYFFVTE 56 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCc---CCceeEeCCH
Confidence 57789999999999999999999776212344556776555443 7788888764
No 498
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.30 E-value=0.047 Score=46.74 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=46.2
Q ss_pred EEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh-hhcccccccEEEEEEEc
Q 005218 192 VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM-RKRGAAVTDIVVLVVAA 270 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~-~~~~~~~aDivllVvDa 270 (708)
+++.|.+|+||||+...|...-.. .|. ..... + .+.++|+|+....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----~g~------~v~~~-~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----RGK------RVLLI-D--DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----CCC------eEEEE-C--CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999988653222 111 11111 1 7899999985443321 13445789999999988
Q ss_pred cCCCC
Q 005218 271 DDGVM 275 (708)
Q Consensus 271 ~~g~~ 275 (708)
+....
T Consensus 69 ~~~~~ 73 (99)
T cd01983 69 EALAV 73 (99)
T ss_pred chhhH
Confidence 76433
No 499
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.28 E-value=0.038 Score=54.20 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=34.3
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPG 246 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG 246 (708)
..|+|+|++|+|||||++.|....... ...+.+|+...... . .+..+.++++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~-~~~~~~~~~~~~ 56 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--V-DGVDYFFVSKEE 56 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--c-CCcEEEEecHHH
Confidence 468999999999999999998754322 22234455433222 1 455666666544
No 500
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.16 E-value=0.015 Score=57.94 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEee
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLD 243 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liD 243 (708)
++.-|+|+|++|+|||||+++|+...... ...+.|||....... +|..+.|++
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~---~G~dY~fvs 56 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE---EGKTYFFLT 56 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC---CCceeEeCC
Confidence 46779999999999999999998754222 334566765433322 556666664
Done!