Query 005218
Match_columns 708
No_of_seqs 638 out of 4439
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 18:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izy_P Translation initiation 100.0 1.9E-96 6E-101 834.4 21.6 497 187-688 2-537 (537)
2 1zo1_I IF2, translation initia 100.0 9.8E-97 3E-101 830.4 17.9 499 187-694 2-500 (501)
3 1g7s_A Translation initiation 100.0 4.2E-79 1.4E-83 702.5 29.6 473 187-698 3-560 (594)
4 3gee_A MNME, tRNA modification 100.0 7E-46 2.4E-50 416.8 4.2 294 5-352 65-397 (476)
5 3geh_A MNME, tRNA modification 100.0 3.5E-45 1.2E-49 409.6 5.9 296 3-352 53-383 (462)
6 1xzp_A Probable tRNA modificat 100.0 5.1E-39 1.8E-43 361.3 6.0 274 24-351 99-403 (482)
7 1d1n_A Initiation factor 2; be 100.0 8.1E-33 2.8E-37 239.7 6.4 98 591-695 2-99 (99)
8 2crv_A IF-2MT, translation ini 100.0 2.4E-32 8.3E-37 244.5 9.4 108 587-698 2-110 (120)
9 3j2k_7 ERF3, eukaryotic polype 100.0 5.6E-30 1.9E-34 285.7 24.3 251 187-444 15-327 (439)
10 2ywe_A GTP-binding protein LEP 100.0 9.1E-30 3.1E-34 292.1 23.0 425 188-678 5-483 (600)
11 3cb4_D GTP-binding protein LEP 100.0 3E-29 1E-33 288.2 22.5 435 188-691 3-499 (599)
12 3p26_A Elongation factor 1 alp 100.0 2.5E-29 8.5E-34 283.9 21.2 256 188-445 32-363 (483)
13 1d2e_A Elongation factor TU (E 100.0 2.3E-29 7.8E-34 277.4 19.0 245 189-442 3-288 (397)
14 2c78_A Elongation factor TU-A; 100.0 1.7E-29 5.8E-34 279.1 16.8 246 188-442 10-306 (405)
15 3tr5_A RF-3, peptide chain rel 100.0 3.9E-29 1.3E-33 284.2 18.7 341 188-574 12-469 (528)
16 1wb1_A Translation elongation 100.0 7.7E-30 2.6E-34 287.6 12.5 251 188-441 18-281 (482)
17 2elf_A Protein translation elo 100.0 8.3E-29 2.8E-33 270.2 19.8 236 191-442 23-275 (370)
18 3mca_A HBS1, elongation factor 100.0 1.8E-29 6.2E-34 290.9 15.2 251 187-443 175-488 (592)
19 3izq_1 HBS1P, elongation facto 100.0 5.7E-29 2E-33 287.6 19.3 257 187-445 165-497 (611)
20 1zun_B Sulfate adenylate trans 100.0 1.3E-28 4.6E-33 274.3 21.2 256 188-445 23-327 (434)
21 3vqt_A RF-3, peptide chain rel 100.0 1.2E-28 4.1E-33 281.5 20.8 341 188-573 30-494 (548)
22 2rdo_7 EF-G, elongation factor 100.0 9.2E-28 3.2E-32 281.9 28.8 311 187-528 8-465 (704)
23 1jny_A EF-1-alpha, elongation 100.0 7.5E-29 2.6E-33 276.4 17.5 250 188-443 5-316 (435)
24 1s0u_A EIF-2-gamma, translatio 100.0 4.1E-28 1.4E-32 268.3 22.3 236 188-428 7-292 (408)
25 1r5b_A Eukaryotic peptide chai 100.0 4.5E-29 1.5E-33 280.5 14.7 253 188-444 42-356 (467)
26 1f60_A Elongation factor EEF1A 100.0 1.3E-28 4.6E-33 276.0 16.6 251 188-444 6-328 (458)
27 1dar_A EF-G, elongation factor 100.0 5.8E-28 2E-32 283.2 21.7 313 187-529 10-459 (691)
28 1kk1_A EIF2gamma; initiation o 100.0 7E-28 2.4E-32 266.6 20.0 236 188-428 9-294 (410)
29 1z9b_A Translation initiation 100.0 1.5E-30 5.2E-35 239.5 -2.5 99 483-582 37-135 (135)
30 3avx_A Elongation factor TS, e 99.9 1.2E-27 4E-32 286.0 18.9 249 188-442 295-579 (1289)
31 2h5e_A Peptide chain release f 99.9 6E-27 2E-31 266.5 21.2 340 188-573 12-469 (529)
32 3sjy_A Translation initiation 99.9 4.9E-27 1.7E-31 259.2 19.3 237 187-428 6-286 (403)
33 2dy1_A Elongation factor G; tr 99.9 1.2E-26 4.1E-31 271.2 18.6 254 186-444 6-366 (665)
34 2xex_A Elongation factor G; GT 99.9 6.6E-26 2.3E-30 265.9 21.2 256 187-444 8-393 (693)
35 4fn5_A EF-G 1, elongation fact 99.9 5.4E-26 1.9E-30 267.6 17.9 257 188-445 12-405 (709)
36 2lkc_A Translation initiation 99.9 2.9E-25 9.9E-30 214.4 14.7 172 185-357 4-175 (178)
37 3j25_A Tetracycline resistance 99.9 3.2E-27 1.1E-31 274.7 -1.5 239 188-429 1-317 (638)
38 1n0u_A EF-2, elongation factor 99.9 2.8E-22 9.6E-27 239.7 16.5 253 188-441 18-470 (842)
39 2dyk_A GTP-binding protein; GT 99.9 4.3E-21 1.5E-25 181.7 13.7 150 190-350 2-159 (161)
40 2hjg_A GTP-binding protein ENG 99.8 1.6E-21 5.3E-26 217.4 11.9 163 187-354 173-350 (436)
41 1upt_A ARL1, ADP-ribosylation 99.8 8.7E-21 3E-25 181.4 15.0 161 184-352 2-168 (171)
42 4bas_A ADP-ribosylation factor 99.8 1.1E-20 3.7E-25 185.7 15.6 161 187-353 15-189 (199)
43 3tkl_A RAS-related protein RAB 99.8 7.2E-21 2.5E-25 186.5 14.3 160 188-354 15-180 (196)
44 4dkx_A RAS-related protein RAB 99.8 4.8E-21 1.6E-25 193.6 12.7 158 188-351 12-174 (216)
45 4dhe_A Probable GTP-binding pr 99.8 3.7E-21 1.3E-25 193.2 11.4 164 187-352 27-210 (223)
46 1wf3_A GTP-binding protein; GT 99.8 2.8E-21 9.7E-26 205.0 10.9 154 188-350 6-170 (301)
47 3tw8_B RAS-related protein RAB 99.8 5.2E-21 1.8E-25 184.4 11.4 159 188-353 8-171 (181)
48 3iev_A GTP-binding protein ERA 99.8 4.7E-21 1.6E-25 203.9 12.0 159 188-351 9-180 (308)
49 2gj8_A MNME, tRNA modification 99.8 3.1E-21 1.1E-25 187.0 9.3 150 188-351 3-164 (172)
50 2bme_A RAB4A, RAS-related prot 99.8 8.2E-21 2.8E-25 184.6 12.2 159 187-352 8-172 (186)
51 2g6b_A RAS-related protein RAB 99.8 1.2E-20 3.9E-25 182.3 13.1 160 186-352 7-173 (180)
52 2hxs_A RAB-26, RAS-related pro 99.8 3.5E-21 1.2E-25 185.6 9.0 159 188-352 5-172 (178)
53 1g16_A RAS-related protein SEC 99.8 7.3E-21 2.5E-25 181.5 10.8 157 189-352 3-164 (170)
54 1zj6_A ADP-ribosylation factor 99.8 2.3E-20 8E-25 182.3 14.3 158 187-352 14-177 (187)
55 3cph_A RAS-related protein SEC 99.8 1.1E-20 3.8E-25 187.9 12.1 161 184-352 15-181 (213)
56 1ega_A Protein (GTP-binding pr 99.8 1.8E-21 6.1E-26 206.5 6.6 243 188-448 7-286 (301)
57 3clv_A RAB5 protein, putative; 99.8 2.6E-20 8.9E-25 182.5 14.3 158 187-352 5-203 (208)
58 1ky3_A GTP-binding protein YPT 99.8 1E-20 3.5E-25 182.5 11.2 161 188-352 7-177 (182)
59 4dcu_A GTP-binding protein ENG 99.8 1.1E-20 3.7E-25 211.8 12.9 164 187-355 193-371 (456)
60 2fu5_C RAS-related protein RAB 99.8 6.7E-21 2.3E-25 184.9 9.7 158 188-352 7-170 (183)
61 1r8s_A ADP-ribosylation factor 99.8 3E-20 1E-24 176.6 13.8 154 190-351 1-160 (164)
62 1wms_A RAB-9, RAB9, RAS-relate 99.8 3E-20 1E-24 178.9 14.0 157 188-351 6-172 (177)
63 1c1y_A RAS-related protein RAP 99.8 1.9E-20 6.5E-25 178.1 11.9 157 189-351 3-165 (167)
64 1zd9_A ADP-ribosylation factor 99.8 3.2E-20 1.1E-24 181.9 13.8 159 185-350 18-182 (188)
65 2il1_A RAB12; G-protein, GDP, 99.8 8.5E-21 2.9E-25 186.8 9.5 160 187-351 24-188 (192)
66 2hup_A RAS-related protein RAB 99.8 2.2E-20 7.6E-25 185.4 12.4 159 187-352 27-192 (201)
67 1z08_A RAS-related protein RAB 99.8 1.4E-20 4.7E-25 179.8 10.5 158 188-351 5-167 (170)
68 1mky_A Probable GTP-binding pr 99.8 1.3E-20 4.6E-25 210.1 12.0 153 190-352 2-165 (439)
69 1moz_A ARL1, ADP-ribosylation 99.8 3.9E-20 1.3E-24 179.3 13.7 158 187-352 16-179 (183)
70 2y8e_A RAB-protein 6, GH09086P 99.8 2.6E-20 8.7E-25 179.2 12.2 156 188-350 13-174 (179)
71 1vg8_A RAS-related protein RAB 99.8 2.3E-20 7.8E-25 184.8 12.2 160 187-352 6-174 (207)
72 1ksh_A ARF-like protein 2; sma 99.8 6E-20 2.1E-24 178.9 14.8 158 187-352 16-179 (186)
73 2ew1_A RAS-related protein RAB 99.8 2.3E-20 7.8E-25 186.0 12.0 159 187-352 24-188 (201)
74 2efe_B Small GTP-binding prote 99.8 1.3E-20 4.6E-25 182.0 9.9 158 188-351 11-173 (181)
75 1z0f_A RAB14, member RAS oncog 99.8 2.8E-20 9.7E-25 178.9 12.1 159 187-351 13-176 (179)
76 2wji_A Ferrous iron transport 99.8 9.4E-21 3.2E-25 181.9 8.5 151 189-350 3-162 (165)
77 3kkq_A RAS-related protein M-R 99.8 4.5E-20 1.5E-24 179.1 13.4 157 188-352 17-181 (183)
78 3reg_A RHO-like small GTPase; 99.8 1.7E-20 5.7E-25 184.5 10.4 161 187-352 21-187 (194)
79 3iby_A Ferrous iron transport 99.8 8.5E-21 2.9E-25 196.7 8.6 150 190-350 2-164 (256)
80 2h57_A ADP-ribosylation factor 99.8 4.7E-20 1.6E-24 180.7 13.5 158 186-351 18-185 (190)
81 1f6b_A SAR1; gtpases, N-termin 99.8 6.1E-20 2.1E-24 182.0 14.4 159 187-349 23-195 (198)
82 3t5g_A GTP-binding protein RHE 99.8 3.3E-20 1.1E-24 179.7 12.2 159 188-354 5-170 (181)
83 2h17_A ADP-ribosylation factor 99.8 6.1E-20 2.1E-24 178.6 13.7 156 186-349 18-179 (181)
84 1m2o_B GTP-binding protein SAR 99.8 9.2E-20 3.1E-24 179.4 15.1 158 187-349 21-188 (190)
85 2x77_A ADP-ribosylation factor 99.8 7.4E-20 2.5E-24 178.9 14.2 158 187-352 20-183 (189)
86 3pqc_A Probable GTP-binding pr 99.8 5E-20 1.7E-24 179.9 13.0 157 187-351 21-192 (195)
87 1zbd_A Rabphilin-3A; G protein 99.8 5E-20 1.7E-24 182.2 13.1 160 187-352 6-170 (203)
88 4djt_A GTP-binding nuclear pro 99.8 3.6E-20 1.2E-24 185.5 12.2 162 187-354 9-176 (218)
89 4dsu_A GTPase KRAS, isoform 2B 99.8 3.5E-20 1.2E-24 180.1 11.6 156 188-353 3-166 (189)
90 3t1o_A Gliding protein MGLA; G 99.8 4.1E-20 1.4E-24 180.8 12.1 157 188-352 13-191 (198)
91 3bc1_A RAS-related protein RAB 99.8 5.1E-20 1.7E-24 179.4 12.7 160 187-352 9-184 (195)
92 1kao_A RAP2A; GTP-binding prot 99.8 1.7E-20 5.9E-25 177.8 9.0 156 189-351 3-164 (167)
93 1ek0_A Protein (GTP-binding pr 99.8 2E-20 6.9E-25 178.2 9.4 157 189-350 3-166 (170)
94 2bcg_Y Protein YP2, GTP-bindin 99.8 5.3E-20 1.8E-24 182.6 12.8 160 187-352 6-170 (206)
95 1z2a_A RAS-related protein RAB 99.8 2E-20 6.9E-25 178.1 9.4 158 188-351 4-165 (168)
96 1r2q_A RAS-related protein RAB 99.8 3.2E-20 1.1E-24 176.7 10.8 157 188-350 5-166 (170)
97 2qu8_A Putative nucleolar GTP- 99.8 9.9E-20 3.4E-24 184.4 14.9 161 187-352 27-204 (228)
98 3q72_A GTP-binding protein RAD 99.8 6.3E-20 2.2E-24 174.7 12.6 155 189-352 2-163 (166)
99 2o52_A RAS-related protein RAB 99.8 2.5E-20 8.5E-25 184.8 10.1 159 187-352 23-187 (200)
100 2p5s_A RAS and EF-hand domain 99.8 9.5E-21 3.2E-25 187.4 7.0 160 187-351 26-195 (199)
101 2a5j_A RAS-related protein RAB 99.8 6E-20 2E-24 180.2 12.6 160 187-352 19-183 (191)
102 2oil_A CATX-8, RAS-related pro 99.8 2.3E-20 7.7E-25 183.2 9.5 160 186-351 22-186 (193)
103 2b6h_A ADP-ribosylation factor 99.8 7.8E-20 2.7E-24 180.2 13.4 157 187-351 27-189 (192)
104 1z0j_A RAB-22, RAS-related pro 99.8 4.7E-20 1.6E-24 175.8 11.4 157 188-350 5-166 (170)
105 2nzj_A GTP-binding protein REM 99.8 5.2E-20 1.8E-24 176.6 11.7 157 188-352 3-168 (175)
106 1u8z_A RAS-related protein RAL 99.8 3.3E-20 1.1E-24 176.1 10.2 156 189-351 4-165 (168)
107 2fn4_A P23, RAS-related protei 99.8 3.8E-20 1.3E-24 178.3 10.7 159 187-353 7-172 (181)
108 3q3j_B RHO-related GTP-binding 99.8 3.6E-20 1.2E-24 186.0 10.7 165 187-352 25-202 (214)
109 1mh1_A RAC1; GTP-binding, GTPa 99.8 2.9E-20 1E-24 180.2 9.7 161 188-351 4-178 (186)
110 3q85_A GTP-binding protein REM 99.8 5.1E-20 1.7E-24 175.9 11.2 157 190-352 3-166 (169)
111 1fzq_A ADP-ribosylation factor 99.8 2.4E-19 8.1E-24 174.9 16.1 155 187-350 14-175 (181)
112 1svi_A GTP-binding protein YSX 99.8 1.2E-19 4.1E-24 177.9 14.0 156 188-351 22-193 (195)
113 1x3s_A RAS-related protein RAB 99.8 8.4E-20 2.9E-24 178.6 12.8 158 188-352 14-177 (195)
114 2gf9_A RAS-related protein RAB 99.8 6.7E-20 2.3E-24 179.4 12.0 158 188-351 21-183 (189)
115 2fh5_B SR-beta, signal recogni 99.8 7.4E-20 2.5E-24 182.7 12.5 161 187-350 5-213 (214)
116 2hjg_A GTP-binding protein ENG 99.8 3.5E-20 1.2E-24 206.5 11.2 151 190-351 4-163 (436)
117 2gco_A H9, RHO-related GTP-bin 99.8 2.7E-20 9.1E-25 184.6 9.1 162 187-351 23-198 (201)
118 3oes_A GTPase rhebl1; small GT 99.8 4.2E-20 1.4E-24 183.0 10.4 162 186-354 21-188 (201)
119 2gf0_A GTP-binding protein DI- 99.8 1.1E-19 3.9E-24 178.4 12.9 157 188-352 7-170 (199)
120 4gzl_A RAS-related C3 botulinu 99.8 5.5E-20 1.9E-24 183.0 10.6 161 187-350 28-202 (204)
121 2atx_A Small GTP binding prote 99.8 8.9E-20 3E-24 179.1 11.9 161 188-351 17-191 (194)
122 3gj0_A GTP-binding nuclear pro 99.8 5.9E-20 2E-24 184.7 10.8 157 187-352 13-174 (221)
123 3bwd_D RAC-like GTP-binding pr 99.8 2.3E-20 7.8E-25 180.5 7.5 160 187-351 6-179 (182)
124 2fg5_A RAB-22B, RAS-related pr 99.8 5.1E-20 1.7E-24 181.0 10.1 158 187-351 21-184 (192)
125 2f7s_A C25KG, RAS-related prot 99.8 7.5E-20 2.6E-24 183.0 11.4 160 187-352 23-198 (217)
126 2erx_A GTP-binding protein DI- 99.8 4.2E-20 1.4E-24 176.3 9.0 156 189-351 3-165 (172)
127 3cpj_B GTP-binding protein YPT 99.8 5E-20 1.7E-24 185.8 9.7 159 187-352 11-175 (223)
128 3a1s_A Iron(II) transport prot 99.8 4.6E-20 1.6E-24 191.4 9.6 154 188-352 4-166 (258)
129 3dz8_A RAS-related protein RAB 99.8 3.1E-20 1.1E-24 182.3 7.8 160 187-352 21-185 (191)
130 2q3h_A RAS homolog gene family 99.8 9.3E-20 3.2E-24 180.0 11.2 166 185-352 16-194 (201)
131 2bov_A RAla, RAS-related prote 99.8 1.2E-19 4.1E-24 179.3 11.9 160 187-353 12-177 (206)
132 3i8s_A Ferrous iron transport 99.8 1.9E-20 6.4E-25 196.0 6.4 152 188-350 2-166 (274)
133 2a9k_A RAS-related protein RAL 99.8 8.1E-20 2.8E-24 177.0 10.3 158 188-352 17-180 (187)
134 2ce2_X GTPase HRAS; signaling 99.8 1.7E-19 5.7E-24 170.6 12.2 155 189-351 3-163 (166)
135 2wjg_A FEOB, ferrous iron tran 99.8 7.3E-20 2.5E-24 178.4 10.0 155 188-353 6-169 (188)
136 2j0v_A RAC-like GTP-binding pr 99.8 5.1E-20 1.8E-24 183.6 8.6 160 188-352 8-179 (212)
137 1z06_A RAS-related protein RAB 99.8 1.1E-19 3.9E-24 177.8 10.6 159 187-351 18-186 (189)
138 2yc2_C IFT27, small RAB-relate 99.8 8.5E-20 2.9E-24 180.4 9.8 159 188-352 19-191 (208)
139 3con_A GTPase NRAS; structural 99.8 2.1E-19 7.2E-24 175.6 12.1 158 188-353 20-183 (190)
140 2j1l_A RHO-related GTP-binding 99.8 8E-20 2.7E-24 183.2 8.8 163 187-352 32-208 (214)
141 2fv8_A H6, RHO-related GTP-bin 99.8 7.9E-20 2.7E-24 182.0 8.6 161 188-351 24-198 (207)
142 3cbq_A GTP-binding protein REM 99.8 1.7E-19 5.9E-24 178.4 11.0 159 188-352 22-187 (195)
143 1m7b_A RND3/RHOE small GTP-bin 99.8 1.2E-19 4E-24 177.1 9.3 164 187-351 5-181 (184)
144 3o47_A ADP-ribosylation factor 99.8 3.7E-19 1.3E-23 191.0 13.5 157 187-351 163-325 (329)
145 3k53_A Ferrous iron transport 99.8 2.9E-19 1E-23 186.3 12.2 153 189-352 3-165 (271)
146 1mky_A Probable GTP-binding pr 99.8 3.1E-19 1.1E-23 199.0 13.2 163 187-354 178-356 (439)
147 2cxx_A Probable GTP-binding pr 99.8 2.4E-19 8.2E-24 174.6 10.0 157 190-353 2-184 (190)
148 3l0i_B RAS-related protein RAB 99.8 1.7E-20 5.8E-25 185.5 1.8 157 187-350 31-193 (199)
149 3qq5_A Small GTP-binding prote 99.8 1.2E-19 4.3E-24 200.5 8.8 154 188-351 33-194 (423)
150 3ihw_A Centg3; RAS, centaurin, 99.8 3.7E-19 1.3E-23 174.2 11.2 154 187-352 18-179 (184)
151 2atv_A RERG, RAS-like estrogen 99.8 6.3E-19 2.1E-23 173.6 11.7 157 188-352 27-190 (196)
152 2iwr_A Centaurin gamma 1; ANK 99.8 4.9E-19 1.7E-23 170.9 10.4 154 188-352 6-168 (178)
153 3b1v_A Ferrous iron uptake tra 99.8 1.4E-19 4.8E-24 189.2 6.8 150 189-350 3-161 (272)
154 4dcu_A GTP-binding protein ENG 99.8 4.8E-19 1.6E-23 198.4 11.4 153 188-351 22-183 (456)
155 1gwn_A RHO-related GTP-binding 99.8 4.3E-19 1.5E-23 177.2 9.1 162 188-351 27-202 (205)
156 3th5_A RAS-related C3 botulinu 99.6 2.7E-20 9.3E-25 184.6 0.0 163 187-350 28-202 (204)
157 3c5c_A RAS-like protein 12; GD 99.8 7.8E-19 2.7E-23 172.1 10.3 156 188-351 20-184 (187)
158 3llu_A RAS-related GTP-binding 99.8 7.2E-19 2.5E-23 173.5 10.0 161 187-350 18-194 (196)
159 3lvq_E ARF-GAP with SH3 domain 99.8 1.4E-18 4.9E-23 196.4 13.3 158 188-353 321-484 (497)
160 2g3y_A GTP-binding protein GEM 99.7 2.6E-18 9E-23 172.8 11.1 158 188-352 36-202 (211)
161 2xtp_A GTPase IMAP family memb 99.7 1.4E-18 4.8E-23 179.6 8.6 162 187-353 20-208 (260)
162 3r7w_A Gtpase1, GTP-binding pr 99.7 2.6E-18 8.9E-23 182.6 9.8 161 188-349 2-177 (307)
163 2cjw_A GTP-binding protein GEM 99.7 4.5E-18 1.5E-22 167.8 9.9 157 189-352 6-171 (192)
164 2zej_A Dardarin, leucine-rich 99.7 4.5E-18 1.5E-22 166.1 9.3 162 189-352 2-177 (184)
165 2qtf_A Protein HFLX, GTP-bindi 99.7 1.5E-17 5.1E-22 180.8 13.0 165 186-355 175-356 (364)
166 2aka_B Dynamin-1; fusion prote 99.7 1.5E-17 5.1E-22 174.8 12.5 163 187-352 24-252 (299)
167 2wkq_A NPH1-1, RAS-related C3 99.7 1.2E-17 4E-22 177.7 11.7 162 186-351 152-328 (332)
168 3lxw_A GTPase IMAP family memb 99.7 1E-17 3.5E-22 172.5 8.4 163 187-353 19-208 (247)
169 1lnz_A SPO0B-associated GTP-bi 99.7 8.8E-18 3E-22 181.0 6.5 157 189-353 158-330 (342)
170 2e87_A Hypothetical protein PH 99.7 1.2E-16 3.9E-21 173.4 13.3 158 187-353 165-336 (357)
171 2f9l_A RAB11B, member RAS onco 99.7 1.5E-16 5E-21 157.3 11.9 157 189-352 5-167 (199)
172 3dpu_A RAB family protein; roc 99.7 6.3E-17 2.2E-21 184.7 10.2 158 187-352 39-207 (535)
173 1jwy_B Dynamin A GTPase domain 99.7 3.5E-16 1.2E-20 165.8 12.4 161 188-352 23-261 (315)
174 3c5h_A Glucocorticoid receptor 99.6 5.4E-17 1.8E-21 167.8 4.8 159 186-351 16-253 (255)
175 3t5d_A Septin-7; GTP-binding p 99.6 2E-16 6.7E-21 165.2 8.5 154 190-349 9-200 (274)
176 1nrj_B SR-beta, signal recogni 99.6 1.2E-16 4.2E-21 159.7 6.1 144 187-339 10-170 (218)
177 3lxx_A GTPase IMAP family memb 99.6 6.6E-16 2.3E-20 157.5 10.8 162 188-353 28-214 (239)
178 1oix_A RAS-related protein RAB 99.6 8.2E-16 2.8E-20 151.3 11.1 156 188-350 28-189 (191)
179 1pui_A ENGB, probable GTP-bind 99.6 2.3E-15 8E-20 149.3 12.1 159 186-351 23-197 (210)
180 2x2e_A Dynamin-1; nitration, h 99.6 9.1E-16 3.1E-20 166.1 9.0 160 188-350 30-255 (353)
181 2j69_A Bacterial dynamin-like 99.6 9.1E-16 3.1E-20 180.0 8.7 166 186-351 66-323 (695)
182 3r7w_B Gtpase2, GTP-binding pr 99.6 1.4E-15 4.7E-20 161.9 9.1 155 191-349 1-170 (331)
183 3def_A T7I23.11 protein; chlor 99.6 8.1E-15 2.8E-19 151.9 11.1 116 188-304 35-166 (262)
184 3zvr_A Dynamin-1; hydrolase, D 99.5 2.6E-14 8.8E-19 167.2 12.7 160 188-350 50-275 (772)
185 1wxq_A GTP-binding protein; st 99.5 6.2E-15 2.1E-19 161.9 6.9 84 190-273 1-114 (397)
186 2ged_A SR-beta, signal recogni 99.5 1.1E-14 3.8E-19 142.3 6.7 110 187-304 46-171 (193)
187 3t34_A Dynamin-related protein 99.5 2.9E-14 1E-18 154.6 9.6 156 188-349 33-257 (360)
188 1h65_A Chloroplast outer envel 99.5 4.8E-14 1.7E-18 146.7 10.5 115 188-303 38-168 (270)
189 2www_A Methylmalonic aciduria 99.5 9.9E-15 3.4E-19 157.8 4.0 158 187-352 72-278 (349)
190 2qag_A Septin-2, protein NEDD5 99.5 7.4E-14 2.5E-18 151.6 8.7 153 189-351 37-231 (361)
191 1udx_A The GTP-binding protein 99.5 1.4E-13 4.7E-18 151.8 10.7 158 187-353 155-325 (416)
192 2p67_A LAO/AO transport system 99.4 6.6E-14 2.2E-18 150.9 6.7 158 187-352 54-260 (341)
193 3p32_A Probable GTPase RV1496/ 99.4 9E-14 3.1E-18 150.6 7.3 158 188-353 78-284 (355)
194 4a9a_A Ribosome-interacting GT 99.4 2.9E-13 1E-17 147.0 9.7 110 190-302 73-195 (376)
195 1jal_A YCHF protein; nucleotid 99.4 9.1E-13 3.1E-17 142.4 12.5 84 189-272 2-108 (363)
196 2wsm_A Hydrogenase expression/ 99.4 1.4E-13 4.8E-18 137.8 5.4 150 188-351 29-212 (221)
197 2qpt_A EH domain-containing pr 99.4 7.5E-13 2.6E-17 151.2 10.4 117 187-303 63-232 (550)
198 1yrb_A ATP(GTP)binding protein 99.3 3.9E-13 1.3E-17 138.3 3.7 166 186-352 11-256 (262)
199 2dby_A GTP-binding protein; GD 99.3 6.7E-12 2.3E-16 136.2 10.5 83 190-272 2-111 (368)
200 2qm8_A GTPase/ATPase; G protei 99.2 1.8E-12 6E-17 139.5 2.2 158 187-352 53-260 (337)
201 2qnr_A Septin-2, protein NEDD5 99.2 1.1E-11 3.9E-16 131.1 7.9 155 189-352 18-213 (301)
202 2hf9_A Probable hydrogenase ni 99.2 2.1E-11 7.2E-16 122.3 9.3 151 188-352 37-223 (226)
203 2qag_C Septin-7; cell cycle, c 99.1 5.7E-11 2E-15 131.0 7.9 151 190-348 32-222 (418)
204 3ohm_A Guanine nucleotide-bind 99.1 9.5E-11 3.3E-15 125.0 7.6 129 225-354 156-319 (327)
205 1cip_A Protein (guanine nucleo 99.0 1.6E-10 5.4E-15 124.8 6.2 128 225-353 182-344 (353)
206 2ohf_A Protein OLA1, GTP-bindi 98.9 7.2E-10 2.5E-14 120.9 7.2 87 186-272 19-128 (396)
207 2j37_W Signal recognition part 98.9 6.3E-10 2.1E-14 125.3 5.9 159 187-350 99-310 (504)
208 1zcb_A G alpha I/13; GTP-bindi 98.9 6.5E-10 2.2E-14 120.5 5.7 155 198-353 156-353 (362)
209 3ec1_A YQEH GTPase; atnos1, at 98.9 5.2E-11 1.8E-15 129.5 -3.9 112 188-303 161-288 (369)
210 1u0l_A Probable GTPase ENGC; p 98.9 4.4E-10 1.5E-14 118.8 3.0 134 204-348 32-168 (301)
211 3h2y_A GTPase family protein; 98.8 9.8E-10 3.4E-14 119.4 0.6 112 188-303 159-287 (368)
212 4fid_A G protein alpha subunit 98.8 6.5E-09 2.2E-13 111.3 6.7 130 223-353 148-328 (340)
213 1xe1_A Hypothetical protein PF 98.7 7.6E-08 2.6E-12 85.7 10.1 82 592-687 31-114 (116)
214 1azs_C GS-alpha; complex (lyas 98.7 1.3E-08 4.3E-13 111.5 6.2 126 226-352 207-384 (402)
215 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 2.5E-08 8.4E-13 108.9 8.1 87 186-272 17-127 (392)
216 2xtz_A Guanine nucleotide-bind 98.7 5E-09 1.7E-13 113.1 2.5 115 236-352 182-344 (354)
217 2qag_B Septin-6, protein NEDD5 98.6 1.3E-07 4.5E-12 104.0 10.6 115 187-303 38-190 (427)
218 1tq4_A IIGP1, interferon-induc 98.5 2.3E-07 7.7E-12 102.0 11.3 160 188-351 68-251 (413)
219 3l82_B F-box only protein 4; T 98.5 2E-07 6.8E-12 92.5 7.4 162 185-351 12-221 (227)
220 2v3c_C SRP54, signal recogniti 98.4 4.3E-08 1.5E-12 108.6 1.9 157 188-349 98-307 (432)
221 1f5n_A Interferon-induced guan 98.4 1.5E-07 5E-12 107.8 4.9 95 188-285 37-145 (592)
222 2yv5_A YJEQ protein; hydrolase 98.4 1.9E-07 6.7E-12 98.5 4.6 97 247-348 66-164 (302)
223 3sop_A Neuronal-specific septi 98.4 4.6E-07 1.6E-11 94.1 7.1 112 190-303 3-154 (270)
224 1puj_A YLQF, conserved hypothe 98.4 2.5E-07 8.6E-12 96.7 5.2 59 186-248 117-176 (282)
225 3dm5_A SRP54, signal recogniti 98.2 2.3E-06 7.9E-11 94.5 9.7 142 188-343 99-281 (443)
226 3l2o_B F-box only protein 4; s 98.2 1.8E-06 6.2E-11 89.5 7.1 102 245-351 195-306 (312)
227 1puj_A YLQF, conserved hypothe 98.1 3.2E-06 1.1E-10 88.3 6.4 102 241-352 3-105 (282)
228 3cnl_A YLQF, putative uncharac 98.0 2.1E-06 7.3E-11 88.7 3.8 57 190-250 100-157 (262)
229 3kl4_A SRP54, signal recogniti 98.0 6.2E-06 2.1E-10 91.0 7.1 142 188-343 96-280 (433)
230 3e70_C DPA, signal recognition 98.0 8.3E-06 2.9E-10 87.0 7.3 143 187-343 127-310 (328)
231 1j8m_F SRP54, signal recogniti 97.9 1.9E-05 6.4E-10 83.1 8.4 141 189-344 98-282 (297)
232 3ec1_A YQEH GTPase; atnos1, at 97.9 8.6E-06 3E-10 88.3 5.1 105 241-351 53-160 (369)
233 2c78_A Elongation factor TU-A; 97.8 0.00025 8.5E-09 77.6 15.2 184 494-685 80-305 (405)
234 3szr_A Interferon-induced GTP- 97.8 4.4E-05 1.5E-09 88.1 9.0 68 237-304 147-229 (608)
235 3h2y_A GTPase family protein; 97.8 1.2E-05 4.1E-10 87.1 4.1 100 246-350 55-157 (368)
236 1d2e_A Elongation factor TU (E 97.8 0.00063 2.1E-08 74.3 17.7 183 494-685 71-287 (397)
237 2elf_A Protein translation elo 97.7 0.00032 1.1E-08 76.0 13.3 182 494-686 65-275 (370)
238 3cnl_A YLQF, putative uncharac 97.5 1.3E-05 4.3E-10 82.8 -0.4 93 244-349 4-97 (262)
239 3e1y_E Eukaryotic peptide chai 97.5 0.0002 6.7E-09 71.1 7.6 82 360-444 3-89 (204)
240 3j2k_7 ERF3, eukaryotic polype 97.4 0.0022 7.7E-08 70.9 16.5 179 494-685 100-324 (439)
241 3q5d_A Atlastin-1; G protein, 97.4 0.00013 4.5E-09 80.7 6.1 95 189-285 67-193 (447)
242 3avx_A Elongation factor TS, e 97.4 0.0032 1.1E-07 76.6 18.2 183 494-685 364-578 (1289)
243 1r5b_A Eukaryotic peptide chai 97.3 0.0014 4.8E-08 73.1 13.6 179 494-685 126-353 (467)
244 1jny_A EF-1-alpha, elongation 97.3 0.0017 5.9E-08 71.6 13.9 182 494-685 89-314 (435)
245 2xxa_A Signal recognition part 97.3 0.00025 8.5E-09 78.4 6.7 112 188-302 99-253 (433)
246 2yhs_A FTSY, cell division pro 97.2 0.00061 2.1E-08 76.1 8.3 143 186-343 290-480 (503)
247 1t9h_A YLOQ, probable GTPase E 97.1 0.00017 5.9E-09 76.0 2.4 87 256-347 82-171 (307)
248 1zun_B Sulfate adenylate trans 97.1 0.0026 9E-08 70.1 11.9 182 494-686 109-324 (434)
249 1rj9_A FTSY, signal recognitio 97.0 0.0014 4.7E-08 69.0 8.6 141 188-343 101-289 (304)
250 3e1y_E Eukaryotic peptide chai 97.0 0.0023 7.7E-08 63.4 9.6 75 599-685 10-86 (204)
251 1vma_A Cell division protein F 97.0 0.00047 1.6E-08 72.7 4.9 141 187-343 102-291 (306)
252 3mca_A HBS1, elongation factor 97.0 0.0024 8.3E-08 73.3 11.2 98 573-685 386-486 (592)
253 1f60_A Elongation factor EEF1A 96.9 0.0021 7.1E-08 71.5 9.6 101 572-686 224-326 (458)
254 1zu4_A FTSY; GTPase, signal re 96.8 0.0017 5.8E-08 68.8 7.2 95 235-344 190-297 (320)
255 3p26_A Elongation factor 1 alp 96.7 0.0045 1.5E-07 69.2 10.3 79 597-685 268-359 (483)
256 1kk1_A EIF2gamma; initiation o 96.7 0.0092 3.2E-07 65.2 12.1 90 596-685 209-313 (410)
257 3sjy_A Translation initiation 96.6 0.0069 2.3E-07 66.1 10.7 112 571-685 179-305 (403)
258 1s0u_A EIF-2-gamma, translatio 96.6 0.0052 1.8E-07 67.2 9.5 90 596-685 207-311 (408)
259 3izq_1 HBS1P, elongation facto 96.5 0.014 4.8E-07 67.2 12.8 182 493-685 249-493 (611)
260 2px0_A Flagellar biosynthesis 96.5 0.0018 6E-08 67.9 4.5 112 187-302 103-252 (296)
261 1t9h_A YLOQ, probable GTPase E 96.4 0.00087 3E-08 70.6 2.0 59 187-250 171-237 (307)
262 1xe1_A Hypothetical protein PF 96.3 0.023 7.8E-07 50.6 10.0 78 362-443 33-114 (116)
263 4dzz_A Plasmid partitioning pr 96.3 0.0014 4.9E-08 63.6 2.5 65 235-302 74-143 (206)
264 1wb1_A Translation elongation 96.3 0.0046 1.6E-07 69.2 6.8 178 494-684 78-280 (482)
265 2ffh_A Protein (FFH); SRP54, s 96.2 0.0016 5.6E-08 71.6 2.8 65 235-302 179-250 (425)
266 2rcn_A Probable GTPase ENGC; Y 96.0 0.0029 9.8E-08 68.0 3.0 27 188-214 214-240 (358)
267 2yv5_A YJEQ protein; hydrolase 95.9 0.005 1.7E-07 64.6 4.6 58 188-250 164-229 (302)
268 2rcn_A Probable GTPase ENGC; Y 95.8 0.006 2.1E-07 65.5 4.8 84 257-347 127-213 (358)
269 3ney_A 55 kDa erythrocyte memb 95.8 0.002 7E-08 63.4 0.7 57 188-247 18-76 (197)
270 1u0l_A Probable GTPase ENGC; p 95.5 0.0058 2E-07 64.0 3.0 27 188-214 168-194 (301)
271 1ls1_A Signal recognition part 95.3 0.009 3.1E-07 62.4 3.8 94 235-343 179-279 (295)
272 3cwq_A Para family chromosome 95.3 0.0064 2.2E-07 60.0 2.5 67 235-303 66-134 (209)
273 1bif_A 6-phosphofructo-2-kinas 95.3 0.0031 1.1E-07 70.3 0.2 110 187-300 37-160 (469)
274 2og2_A Putative signal recogni 95.2 0.027 9.3E-07 60.4 7.1 26 186-211 154-179 (359)
275 3cb4_D GTP-binding protein LEP 94.9 0.22 7.4E-06 57.1 14.1 180 495-686 77-276 (599)
276 3end_A Light-independent proto 94.8 0.062 2.1E-06 55.8 8.5 66 235-301 155-225 (307)
277 1lvg_A Guanylate kinase, GMP k 94.6 0.012 4.2E-07 57.4 2.4 25 188-212 3-27 (198)
278 1kgd_A CASK, peripheral plasma 94.6 0.017 5.7E-07 55.4 3.1 25 188-212 4-28 (180)
279 4ido_A Atlastin-1; GTPase, GTP 94.5 0.07 2.4E-06 58.8 8.0 94 190-285 68-193 (457)
280 2ywe_A GTP-binding protein LEP 94.3 0.48 1.6E-05 54.2 14.9 181 495-686 79-278 (600)
281 1zp6_A Hypothetical protein AT 94.2 0.021 7.3E-07 54.6 3.1 27 186-212 6-32 (191)
282 3tr0_A Guanylate kinase, GMP k 94.2 0.023 8E-07 54.9 3.3 26 187-212 5-30 (205)
283 3c8u_A Fructokinase; YP_612366 94.0 0.024 8.2E-07 55.5 3.0 27 186-212 19-45 (208)
284 3tau_A Guanylate kinase, GMP k 94.0 0.03 1E-06 54.9 3.5 27 187-213 6-32 (208)
285 1znw_A Guanylate kinase, GMP k 94.0 0.026 8.9E-07 55.2 3.1 28 185-212 16-43 (207)
286 1s96_A Guanylate kinase, GMP k 93.9 0.028 9.5E-07 56.0 3.1 28 186-213 13-40 (219)
287 1ye8_A Protein THEP1, hypothet 93.9 0.026 8.9E-07 54.3 2.8 22 191-212 2-23 (178)
288 2j41_A Guanylate kinase; GMP, 93.8 0.031 1.1E-06 54.0 3.3 27 187-213 4-30 (207)
289 1z6g_A Guanylate kinase; struc 93.8 0.026 8.8E-07 56.0 2.7 27 186-212 20-46 (218)
290 1ex7_A Guanylate kinase; subst 93.8 0.01 3.4E-07 57.8 -0.4 35 192-226 4-40 (186)
291 1dar_A EF-G, elongation factor 93.7 0.22 7.4E-06 58.1 10.8 67 618-686 324-391 (691)
292 3a00_A Guanylate kinase, GMP k 93.6 0.028 9.4E-07 54.1 2.5 24 190-213 2-25 (186)
293 2h5e_A Peptide chain release f 93.5 0.21 7.2E-06 56.4 9.9 64 618-686 314-381 (529)
294 2rdo_7 EF-G, elongation factor 93.3 0.37 1.3E-05 56.2 11.8 67 618-686 332-399 (704)
295 3tr5_A RF-3, peptide chain rel 93.1 0.24 8.3E-06 55.8 9.6 66 618-685 313-379 (528)
296 2qor_A Guanylate kinase; phosp 93.1 0.044 1.5E-06 53.4 3.0 27 186-212 9-35 (204)
297 3asz_A Uridine kinase; cytidin 93.0 0.04 1.4E-06 53.7 2.6 25 188-212 5-29 (211)
298 4eun_A Thermoresistant glucoki 93.0 0.047 1.6E-06 53.0 3.1 25 187-211 27-51 (200)
299 1kag_A SKI, shikimate kinase I 93.0 0.045 1.5E-06 51.4 2.8 24 189-212 4-27 (173)
300 2v9p_A Replication protein E1; 92.9 0.05 1.7E-06 57.1 3.2 27 186-212 123-149 (305)
301 1g7s_A Translation initiation 92.8 0.38 1.3E-05 55.0 10.8 108 571-688 205-328 (594)
302 4gp7_A Metallophosphoesterase; 92.8 0.035 1.2E-06 52.7 1.8 25 187-211 7-31 (171)
303 3tif_A Uncharacterized ABC tra 92.8 0.051 1.8E-06 54.6 3.0 28 186-213 28-55 (235)
304 3bos_A Putative DNA replicatio 92.7 0.2 6.7E-06 49.1 7.2 25 188-212 51-75 (242)
305 2bbw_A Adenylate kinase 4, AK4 92.7 0.055 1.9E-06 54.3 3.2 23 188-210 26-48 (246)
306 2xex_A Elongation factor G; GT 92.6 0.33 1.1E-05 56.6 10.0 67 618-686 324-391 (693)
307 2pcj_A ABC transporter, lipopr 92.6 0.051 1.7E-06 54.2 2.7 27 187-213 28-54 (224)
308 2orw_A Thymidine kinase; TMTK, 92.5 0.37 1.3E-05 46.3 8.6 40 262-301 76-115 (184)
309 1htw_A HI0065; nucleotide-bind 92.5 0.057 1.9E-06 50.9 2.7 27 187-213 31-57 (158)
310 2cbz_A Multidrug resistance-as 92.4 0.061 2.1E-06 54.2 3.0 28 186-213 28-55 (237)
311 3lnc_A Guanylate kinase, GMP k 92.4 0.043 1.5E-06 54.5 1.9 27 186-212 24-51 (231)
312 2qt1_A Nicotinamide riboside k 92.2 0.081 2.8E-06 51.4 3.5 28 185-212 17-44 (207)
313 1b0u_A Histidine permease; ABC 92.1 0.067 2.3E-06 54.7 3.0 28 186-213 29-56 (262)
314 1knq_A Gluconate kinase; ALFA/ 92.0 0.068 2.3E-06 50.4 2.6 24 188-211 7-30 (175)
315 2pze_A Cystic fibrosis transme 92.0 0.063 2.2E-06 53.7 2.5 27 187-213 32-58 (229)
316 2ghi_A Transport protein; mult 91.9 0.073 2.5E-06 54.4 3.0 27 186-212 43-69 (260)
317 1cke_A CK, MSSA, protein (cyti 91.9 0.079 2.7E-06 52.1 3.2 23 189-211 5-27 (227)
318 3aez_A Pantothenate kinase; tr 91.9 0.07 2.4E-06 56.1 2.9 27 186-212 87-113 (312)
319 3lw7_A Adenylate kinase relate 91.9 0.076 2.6E-06 49.2 2.9 20 190-209 2-21 (179)
320 1np6_A Molybdopterin-guanine d 91.9 0.083 2.8E-06 50.7 3.1 25 188-212 5-29 (174)
321 2olj_A Amino acid ABC transpor 91.9 0.076 2.6E-06 54.4 3.0 28 186-213 47-74 (263)
322 3vaa_A Shikimate kinase, SK; s 91.8 0.082 2.8E-06 51.2 3.1 25 187-211 23-47 (199)
323 1mv5_A LMRA, multidrug resista 91.8 0.067 2.3E-06 54.0 2.5 28 186-213 25-52 (243)
324 1g6h_A High-affinity branched- 91.8 0.067 2.3E-06 54.5 2.5 28 186-213 30-57 (257)
325 3uie_A Adenylyl-sulfate kinase 91.8 0.072 2.5E-06 51.7 2.6 26 187-212 23-48 (200)
326 2ff7_A Alpha-hemolysin translo 91.7 0.069 2.4E-06 54.1 2.5 27 187-213 33-59 (247)
327 1vpl_A ABC transporter, ATP-bi 91.7 0.081 2.8E-06 54.0 3.0 28 186-213 38-65 (256)
328 4g1u_C Hemin import ATP-bindin 91.7 0.071 2.4E-06 54.7 2.6 28 186-213 34-61 (266)
329 2ixe_A Antigen peptide transpo 91.7 0.082 2.8E-06 54.4 3.0 28 186-213 42-69 (271)
330 1sgw_A Putative ABC transporte 91.6 0.065 2.2E-06 53.2 2.2 27 187-213 33-59 (214)
331 3gfo_A Cobalt import ATP-bindi 91.6 0.07 2.4E-06 55.1 2.5 28 186-213 31-58 (275)
332 2rhm_A Putative kinase; P-loop 91.6 0.086 2.9E-06 50.2 2.9 25 187-211 3-27 (193)
333 2jeo_A Uridine-cytidine kinase 91.6 0.077 2.6E-06 53.3 2.6 26 186-211 22-47 (245)
334 2v54_A DTMP kinase, thymidylat 91.6 0.1 3.5E-06 50.2 3.5 25 188-212 3-27 (204)
335 1ji0_A ABC transporter; ATP bi 91.6 0.074 2.5E-06 53.6 2.5 27 187-213 30-56 (240)
336 3ec2_A DNA replication protein 91.5 0.067 2.3E-06 50.8 2.0 25 188-212 37-61 (180)
337 3t61_A Gluconokinase; PSI-biol 91.5 0.089 3E-06 50.9 2.9 24 188-211 17-40 (202)
338 2zu0_C Probable ATP-dependent 91.5 0.089 3.1E-06 53.9 3.1 27 186-212 43-69 (267)
339 1ly1_A Polynucleotide kinase; 91.4 0.079 2.7E-06 49.7 2.4 22 190-211 3-24 (181)
340 2bdt_A BH3686; alpha-beta prot 91.4 0.084 2.9E-06 50.4 2.6 22 190-211 3-24 (189)
341 2d2e_A SUFC protein; ABC-ATPas 91.4 0.08 2.7E-06 53.7 2.5 26 187-212 27-52 (250)
342 2qi9_C Vitamin B12 import ATP- 91.3 0.08 2.7E-06 53.8 2.5 27 187-213 24-50 (249)
343 2ehv_A Hypothetical protein PH 91.3 0.081 2.8E-06 52.5 2.5 26 186-211 27-52 (251)
344 2yz2_A Putative ABC transporte 91.3 0.094 3.2E-06 53.7 3.0 28 186-213 30-57 (266)
345 3kb2_A SPBC2 prophage-derived 91.3 0.094 3.2E-06 48.8 2.8 22 190-211 2-23 (173)
346 2eyu_A Twitching motility prot 91.2 0.085 2.9E-06 53.9 2.6 27 186-212 22-48 (261)
347 1kht_A Adenylate kinase; phosp 91.2 0.1 3.5E-06 49.5 3.0 23 189-211 3-25 (192)
348 3b85_A Phosphate starvation-in 91.2 0.096 3.3E-06 51.6 2.9 25 188-212 21-45 (208)
349 2onk_A Molybdate/tungstate ABC 91.2 0.092 3.2E-06 53.0 2.8 24 190-213 25-48 (240)
350 2dy1_A Elongation factor G; tr 91.1 0.33 1.1E-05 56.3 7.7 76 597-686 285-364 (665)
351 2ihy_A ABC transporter, ATP-bi 91.1 0.086 2.9E-06 54.5 2.5 28 186-213 44-71 (279)
352 2ph1_A Nucleotide-binding prot 91.1 0.29 1E-05 49.5 6.5 67 235-301 127-194 (262)
353 2i3b_A HCR-ntpase, human cance 91.1 0.092 3.1E-06 51.0 2.5 23 190-212 2-24 (189)
354 3zvl_A Bifunctional polynucleo 91.0 0.22 7.5E-06 54.4 5.8 26 187-212 256-281 (416)
355 1uf9_A TT1252 protein; P-loop, 91.0 0.1 3.5E-06 50.1 2.9 28 185-212 4-31 (203)
356 1y63_A LMAJ004144AAA protein; 91.0 0.12 4.1E-06 49.4 3.3 26 187-212 8-33 (184)
357 2nq2_C Hypothetical ABC transp 91.0 0.09 3.1E-06 53.5 2.5 27 187-213 29-55 (253)
358 4a74_A DNA repair and recombin 91.0 0.077 2.6E-06 52.0 1.9 27 186-212 22-48 (231)
359 2kjq_A DNAA-related protein; s 91.0 0.11 3.7E-06 48.3 2.9 25 188-212 35-59 (149)
360 2c95_A Adenylate kinase 1; tra 90.7 0.13 4.4E-06 49.1 3.3 25 187-211 7-31 (196)
361 2bbs_A Cystic fibrosis transme 90.7 0.12 4.1E-06 53.7 3.1 28 186-213 61-88 (290)
362 1nn5_A Similar to deoxythymidy 90.7 0.14 4.6E-06 49.7 3.4 25 187-211 7-31 (215)
363 1rz3_A Hypothetical protein rb 90.6 0.11 3.9E-06 50.4 2.8 25 187-211 20-44 (201)
364 2plr_A DTMP kinase, probable t 90.6 0.11 3.7E-06 50.2 2.6 24 188-211 3-26 (213)
365 1qhx_A CPT, protein (chloramph 90.6 0.13 4.5E-06 48.3 3.1 23 189-211 3-25 (178)
366 2wwf_A Thymidilate kinase, put 90.5 0.16 5.4E-06 49.2 3.7 25 187-211 8-32 (212)
367 3nh6_A ATP-binding cassette SU 90.5 0.081 2.8E-06 55.5 1.7 28 186-213 77-104 (306)
368 3izy_P Translation initiation 90.4 0.081 2.8E-06 59.8 1.7 105 570-689 154-260 (537)
369 1zak_A Adenylate kinase; ATP:A 90.4 0.13 4.4E-06 50.6 2.9 25 187-211 3-27 (222)
370 2if2_A Dephospho-COA kinase; a 90.3 0.13 4.4E-06 49.7 2.9 22 190-211 2-23 (204)
371 1aky_A Adenylate kinase; ATP:A 90.3 0.14 4.7E-06 50.3 3.1 24 188-211 3-26 (220)
372 3cm0_A Adenylate kinase; ATP-b 90.3 0.11 3.6E-06 49.4 2.1 24 188-211 3-26 (186)
373 2cdn_A Adenylate kinase; phosp 90.3 0.16 5.4E-06 49.0 3.4 26 186-211 17-42 (201)
374 3iij_A Coilin-interacting nucl 90.2 0.15 5E-06 48.3 3.0 25 187-211 9-33 (180)
375 1sq5_A Pantothenate kinase; P- 90.1 0.13 4.4E-06 53.8 2.8 26 187-212 78-103 (308)
376 1tev_A UMP-CMP kinase; ploop, 90.1 0.12 4.2E-06 49.0 2.4 24 188-211 2-25 (196)
377 4e22_A Cytidylate kinase; P-lo 90.0 0.15 5.3E-06 51.5 3.2 25 187-211 25-49 (252)
378 1zd8_A GTP:AMP phosphotransfer 89.9 0.15 5.2E-06 50.3 3.1 25 187-211 5-29 (227)
379 3trf_A Shikimate kinase, SK; a 89.9 0.15 5.3E-06 48.2 3.0 23 189-211 5-27 (185)
380 2jaq_A Deoxyguanosine kinase; 89.9 0.15 5E-06 48.9 2.8 21 191-211 2-22 (205)
381 1jjv_A Dephospho-COA kinase; P 89.8 0.14 4.7E-06 49.6 2.6 22 190-211 3-24 (206)
382 1nks_A Adenylate kinase; therm 89.8 0.15 5.1E-06 48.3 2.8 21 191-211 3-23 (194)
383 1xjc_A MOBB protein homolog; s 89.8 0.16 5.5E-06 48.5 2.9 24 188-211 3-26 (169)
384 2pjz_A Hypothetical protein ST 89.7 0.15 5.1E-06 52.2 2.8 27 186-213 28-54 (263)
385 3fvq_A Fe(3+) IONS import ATP- 89.7 0.16 5.5E-06 54.4 3.2 29 186-214 27-55 (359)
386 2f1r_A Molybdopterin-guanine d 89.7 0.082 2.8E-06 50.5 0.8 23 190-212 3-25 (171)
387 3umf_A Adenylate kinase; rossm 89.7 0.17 5.7E-06 50.4 3.1 28 184-211 24-51 (217)
388 3tui_C Methionine import ATP-b 89.7 0.16 5.3E-06 54.6 3.1 28 186-213 51-78 (366)
389 1sxj_A Activator 1 95 kDa subu 89.7 0.71 2.4E-05 51.7 8.6 25 188-212 76-100 (516)
390 2b8t_A Thymidine kinase; deoxy 89.7 0.16 5.6E-06 50.6 3.0 40 262-301 89-128 (223)
391 2vp4_A Deoxynucleoside kinase; 89.6 0.14 5E-06 50.8 2.6 26 187-212 18-43 (230)
392 2yvu_A Probable adenylyl-sulfa 89.5 0.15 5.3E-06 48.5 2.7 25 187-211 11-35 (186)
393 3tqc_A Pantothenate kinase; bi 89.5 0.15 5E-06 53.9 2.7 25 187-211 90-114 (321)
394 1odf_A YGR205W, hypothetical 3 89.5 0.15 5E-06 53.0 2.7 25 187-211 29-53 (290)
395 2gza_A Type IV secretion syste 89.5 0.16 5.4E-06 54.4 3.0 25 188-212 174-198 (361)
396 3n70_A Transport activator; si 89.4 0.48 1.6E-05 43.3 5.9 24 189-212 24-47 (145)
397 2npi_A Protein CLP1; CLP1-PCF1 89.4 0.16 5.5E-06 56.3 3.0 26 188-213 137-162 (460)
398 2yyz_A Sugar ABC transporter, 89.4 0.17 5.8E-06 54.3 3.1 28 186-213 26-53 (359)
399 2bwj_A Adenylate kinase 5; pho 89.3 0.18 6.2E-06 48.2 3.0 24 188-211 11-34 (199)
400 2w0m_A SSO2452; RECA, SSPF, un 89.3 0.15 5.1E-06 49.8 2.4 27 186-212 20-46 (235)
401 3tlx_A Adenylate kinase 2; str 89.3 0.16 5.5E-06 51.0 2.7 25 187-211 27-51 (243)
402 2it1_A 362AA long hypothetical 89.2 0.18 6.1E-06 54.1 3.1 28 186-213 26-53 (362)
403 2pt7_A CAG-ALFA; ATPase, prote 89.1 0.18 6.1E-06 53.4 3.0 24 189-212 171-194 (330)
404 2vli_A Antibiotic resistance p 89.0 0.17 5.6E-06 47.8 2.4 24 188-211 4-27 (183)
405 2pez_A Bifunctional 3'-phospho 89.0 0.17 5.9E-06 47.8 2.6 24 188-211 4-27 (179)
406 1v43_A Sugar-binding transport 89.0 0.19 6.3E-06 54.2 3.1 28 186-213 34-61 (372)
407 2cvh_A DNA repair and recombin 89.0 0.21 7E-06 48.5 3.2 26 186-211 17-42 (220)
408 1z47_A CYSA, putative ABC-tran 88.9 0.16 5.6E-06 54.3 2.5 27 187-213 39-65 (355)
409 3rlf_A Maltose/maltodextrin im 88.9 0.19 6.6E-06 54.2 3.1 28 186-213 26-53 (381)
410 1cr0_A DNA primase/helicase; R 88.8 0.22 7.4E-06 51.3 3.3 27 186-212 32-58 (296)
411 1vht_A Dephospho-COA kinase; s 88.7 0.2 6.8E-06 49.0 2.8 24 188-211 3-26 (218)
412 1gvn_B Zeta; postsegregational 88.5 0.2 6.8E-06 51.8 2.8 24 188-211 32-55 (287)
413 1ukz_A Uridylate kinase; trans 88.5 0.2 6.8E-06 48.3 2.6 25 187-211 13-37 (203)
414 3fb4_A Adenylate kinase; psych 88.5 0.21 7.1E-06 48.7 2.8 21 191-211 2-22 (216)
415 1jbk_A CLPB protein; beta barr 88.5 0.24 8.1E-06 46.2 3.1 24 189-212 43-66 (195)
416 3b9q_A Chloroplast SRP recepto 88.4 0.2 6.9E-06 52.3 2.8 26 186-211 97-122 (302)
417 2ewv_A Twitching motility prot 88.4 0.19 6.5E-06 54.1 2.7 26 187-212 134-159 (372)
418 1g29_1 MALK, maltose transport 88.4 0.19 6.3E-06 54.2 2.5 27 187-213 27-53 (372)
419 2oap_1 GSPE-2, type II secreti 88.2 0.22 7.5E-06 56.0 3.1 25 188-212 259-283 (511)
420 2iyv_A Shikimate kinase, SK; t 88.2 0.21 7.1E-06 47.3 2.5 22 190-211 3-24 (184)
421 3dl0_A Adenylate kinase; phosp 88.2 0.22 7.4E-06 48.6 2.7 21 191-211 2-22 (216)
422 3a4m_A L-seryl-tRNA(SEC) kinas 88.1 0.21 7.1E-06 50.7 2.6 24 188-211 3-26 (260)
423 3gd7_A Fusion complex of cysti 88.1 0.24 8.1E-06 53.7 3.2 27 186-212 44-70 (390)
424 4eaq_A DTMP kinase, thymidylat 88.0 0.23 8E-06 49.5 2.9 25 187-211 24-48 (229)
425 3be4_A Adenylate kinase; malar 88.0 0.23 8E-06 48.7 2.8 24 188-211 4-27 (217)
426 1qf9_A UMP/CMP kinase, protein 87.9 0.25 8.5E-06 46.7 2.8 23 189-211 6-28 (194)
427 3jvv_A Twitching mobility prot 87.9 0.22 7.4E-06 53.4 2.6 23 190-212 124-146 (356)
428 2p5t_B PEZT; postsegregational 87.9 0.18 6.2E-06 50.9 1.9 26 186-211 29-54 (253)
429 3d31_A Sulfate/molybdate ABC t 87.9 0.17 5.7E-06 54.1 1.7 28 186-213 23-50 (348)
430 1lw7_A Transcriptional regulat 87.8 0.18 6.1E-06 53.9 1.9 24 189-212 170-193 (365)
431 1m7g_A Adenylylsulfate kinase; 87.8 0.24 8.1E-06 48.3 2.7 25 187-211 23-47 (211)
432 1via_A Shikimate kinase; struc 87.8 0.23 7.8E-06 46.7 2.5 21 191-211 6-26 (175)
433 1ixz_A ATP-dependent metallopr 87.6 0.29 9.9E-06 49.0 3.3 22 191-212 51-72 (254)
434 2x8a_A Nuclear valosin-contain 87.6 0.29 9.8E-06 50.2 3.3 21 192-212 47-67 (274)
435 1n0w_A DNA repair protein RAD5 87.6 0.22 7.6E-06 49.1 2.3 27 186-212 21-47 (243)
436 1gtv_A TMK, thymidylate kinase 87.5 0.14 5E-06 49.5 0.9 21 191-211 2-22 (214)
437 1svm_A Large T antigen; AAA+ f 87.4 0.29 9.8E-06 52.8 3.3 26 186-211 166-191 (377)
438 3r20_A Cytidylate kinase; stru 87.4 0.28 9.5E-06 49.3 3.0 26 186-211 6-31 (233)
439 1ak2_A Adenylate kinase isoenz 87.3 0.31 1.1E-05 48.3 3.2 26 186-211 13-38 (233)
440 1nij_A Hypothetical protein YJ 87.2 0.24 8.2E-06 52.0 2.4 24 189-212 4-27 (318)
441 1oxx_K GLCV, glucose, ABC tran 87.1 0.16 5.4E-06 54.3 1.0 28 186-213 28-55 (353)
442 3nwj_A ATSK2; P loop, shikimat 87.0 0.28 9.4E-06 49.8 2.7 23 189-211 48-70 (250)
443 1e4v_A Adenylate kinase; trans 87.0 0.3 1E-05 47.7 2.9 21 191-211 2-22 (214)
444 3kta_A Chromosome segregation 86.8 0.36 1.2E-05 45.5 3.3 22 190-211 27-48 (182)
445 1in4_A RUVB, holliday junction 86.8 0.29 9.9E-06 51.6 2.8 23 190-212 52-74 (334)
446 2pbr_A DTMP kinase, thymidylat 86.7 0.31 1.1E-05 46.1 2.8 21 191-211 2-22 (195)
447 2pt5_A Shikimate kinase, SK; a 86.6 0.31 1.1E-05 45.2 2.7 21 191-211 2-22 (168)
448 3io5_A Recombination and repai 86.5 1.2 4.2E-05 46.7 7.3 89 186-296 26-117 (333)
449 2z0h_A DTMP kinase, thymidylat 86.5 0.29 9.9E-06 46.6 2.4 21 191-211 2-22 (197)
450 1d1n_A Initiation factor 2; be 86.2 1.1 3.9E-05 38.5 5.7 78 366-445 9-93 (99)
451 3b60_A Lipid A export ATP-bind 86.2 0.33 1.1E-05 55.3 3.1 28 186-213 366-393 (582)
452 3pfi_A Holliday junction ATP-d 86.1 1.1 3.7E-05 46.7 6.9 24 189-212 55-78 (338)
453 2yl4_A ATP-binding cassette SU 86.1 0.33 1.1E-05 55.5 3.0 28 186-213 367-394 (595)
454 3sr0_A Adenylate kinase; phosp 86.1 0.33 1.1E-05 47.7 2.6 21 191-211 2-22 (206)
455 3qf4_B Uncharacterized ABC tra 86.1 0.37 1.2E-05 55.2 3.4 28 186-213 378-405 (598)
456 1p9r_A General secretion pathw 86.0 0.31 1E-05 53.3 2.6 24 189-212 167-190 (418)
457 1iy2_A ATP-dependent metallopr 86.0 0.4 1.4E-05 48.9 3.3 21 192-212 76-96 (278)
458 4fcw_A Chaperone protein CLPB; 86.0 0.95 3.3E-05 46.4 6.3 22 191-212 49-70 (311)
459 2obl_A ESCN; ATPase, hydrolase 86.0 0.37 1.2E-05 51.4 3.1 26 187-212 69-94 (347)
460 2p65_A Hypothetical protein PF 86.0 0.31 1.1E-05 45.4 2.3 24 189-212 43-66 (187)
461 1uj2_A Uridine-cytidine kinase 85.9 0.33 1.1E-05 48.8 2.6 24 188-211 21-44 (252)
462 1e6c_A Shikimate kinase; phosp 85.9 0.33 1.1E-05 45.2 2.4 22 190-211 3-24 (173)
463 1q3t_A Cytidylate kinase; nucl 85.8 0.41 1.4E-05 47.5 3.3 27 185-211 12-38 (236)
464 3hr8_A Protein RECA; alpha and 85.8 1 3.5E-05 48.1 6.5 26 186-211 58-83 (356)
465 1lv7_A FTSH; alpha/beta domain 85.6 0.43 1.5E-05 47.8 3.3 24 189-212 45-68 (257)
466 2f6r_A COA synthase, bifunctio 85.5 0.38 1.3E-05 49.5 2.9 24 187-210 73-96 (281)
467 3b5x_A Lipid A export ATP-bind 85.5 0.37 1.3E-05 55.0 3.0 28 186-213 366-393 (582)
468 1yqt_A RNAse L inhibitor; ATP- 85.4 0.42 1.4E-05 54.0 3.4 28 186-213 44-71 (538)
469 2zr9_A Protein RECA, recombina 85.3 1.3 4.5E-05 47.0 7.1 26 186-211 58-83 (349)
470 3vqt_A RF-3, peptide chain rel 85.3 1.8 6.3E-05 48.8 8.6 66 618-685 331-397 (548)
471 2w58_A DNAI, primosome compone 85.3 0.42 1.4E-05 45.9 2.9 24 189-212 54-77 (202)
472 2dpy_A FLII, flagellum-specifi 85.1 0.42 1.4E-05 52.6 3.1 27 186-212 154-180 (438)
473 1zo1_I IF2, translation initia 85.1 1.7 5.8E-05 48.6 8.1 104 341-446 385-496 (501)
474 2ze6_A Isopentenyl transferase 85.1 0.38 1.3E-05 48.6 2.6 21 191-211 3-23 (253)
475 1nlf_A Regulatory protein REPA 85.1 0.36 1.2E-05 49.3 2.4 26 186-211 27-52 (279)
476 2xb4_A Adenylate kinase; ATP-b 84.8 0.44 1.5E-05 47.0 2.9 21 191-211 2-22 (223)
477 4a82_A Cystic fibrosis transme 84.7 0.33 1.1E-05 55.3 2.1 28 186-213 364-391 (578)
478 3j16_B RLI1P; ribosome recycli 84.5 0.5 1.7E-05 54.2 3.5 28 186-213 100-127 (608)
479 3e2i_A Thymidine kinase; Zn-bi 84.3 2.3 7.8E-05 42.1 7.7 38 265-302 104-141 (219)
480 3qf4_A ABC transporter, ATP-bi 84.2 0.4 1.4E-05 54.7 2.6 28 186-213 366-393 (587)
481 1xx6_A Thymidine kinase; NESG, 84.1 2.3 7.8E-05 41.1 7.6 23 188-210 7-29 (191)
482 3ozx_A RNAse L inhibitor; ATP 84.1 0.47 1.6E-05 53.6 3.0 28 186-213 22-49 (538)
483 1f2t_A RAD50 ABC-ATPase; DNA d 83.9 0.48 1.6E-05 43.8 2.5 22 189-210 23-44 (149)
484 3bfv_A CAPA1, CAPB2, membrane 83.9 0.95 3.2E-05 46.2 5.0 65 237-302 192-257 (271)
485 1zuh_A Shikimate kinase; alpha 83.9 0.49 1.7E-05 44.0 2.6 22 190-211 8-29 (168)
486 2vhj_A Ntpase P4, P4; non- hyd 83.8 0.91 3.1E-05 47.8 4.8 27 186-212 120-146 (331)
487 3bk7_A ABC transporter ATP-bin 83.8 0.54 1.8E-05 53.9 3.4 28 186-213 114-141 (607)
488 3h4m_A Proteasome-activating n 83.7 0.57 1.9E-05 47.6 3.2 25 188-212 50-74 (285)
489 2dr3_A UPF0273 protein PH0284; 83.7 0.48 1.7E-05 46.6 2.6 26 186-211 20-45 (247)
490 1tue_A Replication protein E1; 83.7 0.48 1.6E-05 46.7 2.5 26 186-211 55-80 (212)
491 3t15_A Ribulose bisphosphate c 83.6 0.61 2.1E-05 48.2 3.4 26 187-212 34-59 (293)
492 2qz4_A Paraplegin; AAA+, SPG7, 83.4 0.62 2.1E-05 46.4 3.3 25 187-211 37-61 (262)
493 2chg_A Replication factor C sm 83.3 0.54 1.8E-05 44.9 2.7 23 190-212 39-61 (226)
494 3ake_A Cytidylate kinase; CMP 83.2 0.57 1.9E-05 44.9 2.9 22 190-211 3-24 (208)
495 2crv_A IF-2MT, translation ini 83.2 1.4 4.7E-05 39.4 5.0 81 365-447 12-103 (120)
496 1a7j_A Phosphoribulokinase; tr 83.2 0.47 1.6E-05 49.1 2.4 24 188-211 4-27 (290)
497 1p5z_B DCK, deoxycytidine kina 82.8 0.44 1.5E-05 48.2 1.9 27 186-212 21-47 (263)
498 1njg_A DNA polymerase III subu 82.7 0.62 2.1E-05 45.0 2.9 22 190-211 46-67 (250)
499 3cio_A ETK, tyrosine-protein k 82.5 1.8 6.2E-05 44.8 6.5 65 237-302 214-279 (299)
500 3cf0_A Transitional endoplasmi 82.5 0.68 2.3E-05 47.8 3.3 25 188-212 48-72 (301)
No 1
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=1.9e-96 Score=834.42 Aligned_cols=497 Identities=47% Similarity=0.763 Sum_probs=450.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+++++|+++||+|||||||+++|++..+...+.+|+|+++....+.++++..++|||||||++|..++.++++.+|++||
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 67899999999999999999999999888888999999998888777567899999999999999999999999999999
Q ss_pred EEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHH
Q 005218 267 VVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~ 346 (708)
|+|++++.++|+.+++..+...++|+|+|+||+|+.+.+++.....+...+...+.|+..++++++||++|.|+++|+++
T Consensus 82 VVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~ 161 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEA 161 (537)
T ss_dssp ECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHH
T ss_pred EEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHH
Confidence 99999999999999999999999999999999999877777777777666666667777889999999999999999999
Q ss_pred HHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccceEEEEecccCCcccccCCCCcEE
Q 005218 347 LLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVE 426 (708)
Q Consensus 347 I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~kVr~i~~~~~~~v~~a~~g~~V~ 426 (708)
|..+++.+.++.+++.|+.++|++++.+++.|+++++++.+|+|++||.+++|..+++||+|++.+|..+++|.||++|.
T Consensus 162 I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g~~~~kVr~i~~~~g~~v~~A~~G~~V~ 241 (537)
T 3izy_P 162 TIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSMPVG 241 (537)
T ss_dssp HHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCSSCCEEEEEEEECCCCCSCCSCCSTTCC
T ss_pred HHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeCCceEEEEEEEcCCCCCCcEEcCCCEEE
Confidence 99988877777788899999999999999999999999999999999999999999999999998899999999999999
Q ss_pred EeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHH-------------------hHH-------Hhh----h--
Q 005218 427 IEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRK-------------------INE-------ERT----E-- 474 (708)
Q Consensus 427 i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~-------------------~~~-------~~~----~-- 474 (708)
|.|++++|.+||+|..++++++|++++++|+.+.+..++.. ... .+. .
T Consensus 242 i~g~~~~~~~Gd~l~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (537)
T 3izy_P 242 IIGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREK 321 (537)
T ss_dssp CCSSEEEEEEESSCCSCCSSCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCEEEecCChHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhhhhccchhhhhhhhhhhhh
Confidence 99999988999999999999999999999886654322100 000 000 0
Q ss_pred --ccC---CCCCCCCCccccEEEEecccccHHHHHHHHHhCCC-CceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCC
Q 005218 475 --NLE---PSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNS-PQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVK 548 (708)
Q Consensus 475 --~~~---~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~-~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~ 548 (708)
... ......+.+.+|+|||||++||+|||.++|.+|++ ++|+++|++++||+||++||.+|++++|+||||||+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~ 401 (537)
T 3izy_P 322 RQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVN 401 (537)
T ss_dssp HHHCTTTTCCCCCCCCCCCCBEEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHHHSCCEEESSCC
T ss_pred hhhhhccchhhcccccceeeEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEEEecCCCCCHHHHHHHHhcCCeEEEecCC
Confidence 000 01112356899999999999999999999999998 899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHcCCeEEEcchhhhhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecE
Q 005218 549 SPPTSVSQAATQAGIKILMHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGC 628 (708)
Q Consensus 549 ~~~~~~~~~a~~~~V~i~~~~iIY~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~ 628 (708)
+++++ +++|++.||+|++|+|||+|+||+++.|+++|+|.++++++|+|+|+++|.+++.+ +.++||||+|++|+
T Consensus 402 ~~~~~-~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~----~~~~iaG~~v~~G~ 476 (537)
T 3izy_P 402 AGNVI-QQLAAKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGK----KKVPVAGCRVQKGQ 476 (537)
T ss_dssp BCHHH-HHHHHHHTCCCBCSCSSCCSHHHHHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSS----CCSCEEEEEECSSE
T ss_pred CCHHH-HHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCCceEEEEEEEEEEcCcEEECCCC----ccCcEEEEEEEeCe
Confidence 99988 89999999999999999999999999999999999999999999999999998621 23699999999999
Q ss_pred EeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcc-cCCCCCCCEEEEEE
Q 005218 629 FTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRD-WHDFQVGDIIQCLE 688 (708)
Q Consensus 629 i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~-~~~~~~gD~ie~y~ 688 (708)
+++|+++||+|+|++||+|+|.||||+|+||+||++|+||||.|++ |+||++||+|||||
T Consensus 477 i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~~~~~~gd~ie~~~ 537 (537)
T 3izy_P 477 IEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKIEFKVGDAIICYE 537 (537)
T ss_dssp EESSSEEEEESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSCSSCSCCCEEEEEC
T ss_pred EeeCCeEEEecCCEEEEEEEEehhcccCcccceEcCCCEEEEEEcCcccCCCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999 99999999999996
No 2
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=9.8e-97 Score=830.44 Aligned_cols=499 Identities=46% Similarity=0.757 Sum_probs=449.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+++++|+++||+|||||||+++|++..+...+.+|+|+++..+.+.+ ++..++|||||||++|..++.+++..+|+++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 57899999999999999999999988777777899999988877776 77899999999999999999999999999999
Q ss_pred EEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHH
Q 005218 267 VVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~ 346 (708)
|+|++++.++|+.+++..+...++|+|+++||+|+.+.+++++...+...+...+.|++.++++++||++|.|+++|+++
T Consensus 81 VVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~ 160 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDA 160 (501)
T ss_dssp EEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHH
T ss_pred EeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhh
Confidence 99999999999999999998899999999999999877666666666555555556666789999999999999999999
Q ss_pred HHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccceEEEEecccCCcccccCCCCcEE
Q 005218 347 LLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVE 426 (708)
Q Consensus 347 I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~kVr~i~~~~~~~v~~a~~g~~V~ 426 (708)
|...++.+.++.+++.|+.++|++++.+++.|.++++++.+|++++||.+++++.+++||+|.+.++..+++|.||++|.
T Consensus 161 I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~~~kVr~i~~~~g~~v~~a~~g~~V~ 240 (501)
T 1zo1_I 161 ILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVE 240 (501)
T ss_dssp TTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBSSCEEEEECCTTTTSEEEECCSSCSS
T ss_pred hhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccceeEEEEEEecCCCcCcEeccCCcEE
Confidence 98765555666677889999999999999999999999999999999999999999999999988999999999999999
Q ss_pred EeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHH
Q 005218 427 IEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDA 506 (708)
Q Consensus 427 i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~ 506 (708)
|.|+.+.|.+||.+..+.+++.|+.++++|++..+..++.+.....+..........+.+.+|+|||||++||+|||+++
T Consensus 241 i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~ 320 (501)
T 1zo1_I 241 ILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDS 320 (501)
T ss_dssp SEEECSCCCTTEEEEEECSSCTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHH
T ss_pred EeCCCCCCCCCCEEEecCCHHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHH
Confidence 99999988999999999999999999998875443322221111122222211122356789999999999999999999
Q ss_pred HHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCchhHHHHHHHcCCeEEEcchhhhhHHHHHHHHhhcC
Q 005218 507 LKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAGIKILMHSIIYHLLDDFGNLVVDKA 586 (708)
Q Consensus 507 l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~~~~~~~a~~~~V~i~~~~iIY~L~d~~~~~~~~~~ 586 (708)
|.++++++++++|++++||+||++||.+|++++|+||||||++++++ +++|++.||+|++|+|||+|+|+++++|++++
T Consensus 321 l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~~~~~~-~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~ 399 (501)
T 1zo1_I 321 LLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASA-RKVIEAESLDLRYYSVIYNLIDEVKAAMSGML 399 (501)
T ss_dssp HTTTTCCCSBCCCCCSSSSSSHHHHSTTTCGGGCCEEECSSCCCHHH-HTTSCSSSSCEEESCCCSHHHHHTHHHHTTTS
T ss_pred HHhhcccccceEEEEeccCCCCHHHHHHHHhcCCEEEEecCCCCHHH-HHHHHHcCCEEEEeCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999998 88999999999999999999999999999999
Q ss_pred CCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCC
Q 005218 587 PGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGN 666 (708)
Q Consensus 587 ~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ 666 (708)
+|+++++++|.|+|+++|++++.+ +||||+|++|++++|+++||+|+|++||+|+|.||||+|+||+||++|+
T Consensus 400 ~~~~~~~~~g~a~v~~~f~~~~~~-------~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ 472 (501)
T 1zo1_I 400 SPELKQQIIGLAEVRDVFKSPKFG-------AIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGM 472 (501)
T ss_dssp STTCCCCCCCCEEEEECSSCCCSS-------CEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTC
T ss_pred CceeeeeeeeEEEEEEEEecCCCC-------EEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCC
Confidence 999999999999999999987644 9999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcccCCCCCCCEEEEEEEEEecC
Q 005218 667 ECGLVIRDWHDFQVGDIIQCLEQVLVKP 694 (708)
Q Consensus 667 ecgi~~~~~~~~~~gD~ie~y~~~~~~~ 694 (708)
||||.|++|+||++||+||||+.+++++
T Consensus 473 ecgi~~~~~~~~~~gd~~~~~~~~~~~~ 500 (501)
T 1zo1_I 473 ECGIGVKNYNDVRTGDVIEVFEIIEIQR 500 (501)
T ss_dssp CEEEEBCCCTTCCTTCEEEECCCTTTSC
T ss_pred EEEEEEcCcCCCCCCCEEEEEEEEEecC
Confidence 9999999999999999999999887765
No 3
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=4.2e-79 Score=702.54 Aligned_cols=473 Identities=29% Similarity=0.477 Sum_probs=388.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec----------CC-------eeEEEeeCCCcch
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS----------TG-------ASITFLDTPGHAA 249 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~----------~g-------~~v~liDTpG~~~ 249 (708)
.++++|+++||+|||||||+++|++..+...+.+|+|+++....+.+. .+ ..++|||||||++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 367899999999999999999999877665566688888776666431 11 2599999999999
Q ss_pred hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCC-Cc--------------chh-----
Q 005218 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA-DP--------------ERV----- 309 (708)
Q Consensus 250 f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~-~~--------------~~~----- 309 (708)
|..++.++++.+|++|+|+|+++|+++|+.+.|..+...++|+|+|+||+|+... .. +.+
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~ 162 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999642 11 111
Q ss_pred ------hhhhhhcccch------hccCCcceEEEEeeecCCCchhHHHHHHHHHHHc---ccccccCCCcceeEEEEEee
Q 005218 310 ------KNQLGAEGLEL------EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMM---NLKARVDGPAQAYVVEARLD 374 (708)
Q Consensus 310 ------~~~l~~~~~~~------~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~---~~~~~~~~p~~~~V~e~~~~ 374 (708)
...+.+.++.. ..+...+|++++||++|.|+++|+++|...+... .+..+++.|+.++|++++.+
T Consensus 163 e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d 242 (594)
T 1g7s_A 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242 (594)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccCCCceeEEEEEEEe
Confidence 11122222211 1234567999999999999999999999876532 23445688999999999999
Q ss_pred CCCCcEEEEEEEeeEEcCCCEEEEccccc----eEEEEecc-----------cCCcccccCCCCcEEEe--ccCCCCCCC
Q 005218 375 KGRGPLTTAIVKAGTLVCGQHVVVGHEWG----RIRAIRDM-----------VGKSTDKARPAMPVEIE--GLKGLPMAG 437 (708)
Q Consensus 375 ~~~G~v~~~~V~~G~L~~gd~v~~g~~~~----kVr~i~~~-----------~~~~v~~a~~g~~V~i~--gl~~~~~~G 437 (708)
++.|.+++++|.+|+|++||.|++++..+ +|++|... .+.+++++.|+.++.+. |++++ .+|
T Consensus 243 ~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~-~~G 321 (594)
T 1g7s_A 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV-MAG 321 (594)
T ss_dssp TTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB-CTT
T ss_pred CCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC-CCC
Confidence 99999999999999999999999998776 88898753 24567888866555555 67776 799
Q ss_pred CeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEE
Q 005218 438 DDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFV 517 (708)
Q Consensus 438 d~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i 517 (708)
|++.++++++++++. .. ..++ .. ....+.+|+|||||++||+|||+++|.++. +
T Consensus 322 d~l~~~~~~~~~~~~------~~--~~~~--------~~-----~~~~~~~~~~vkad~~gs~eal~~~l~~~~-----~ 375 (594)
T 1g7s_A 322 SPLRVVTDPEKVREE------IL--SEIE--------DI-----KIDTDEAGVVVKADTLGSLEAVVKILRDMY-----V 375 (594)
T ss_dssp CEEEECSSHHHHHHH------HH--HHHH--------TT-----SCBCSSSCCEEEESSHHHHHHHHHHHHHTT-----C
T ss_pred CEEEecCCHHHHHHH------HH--HHHH--------hc-----ccccccccEEEEeCCCCCHHHHHHHHHhCC-----C
Confidence 999999998433211 11 1111 11 113568999999999999999999999984 8
Q ss_pred EEEEecCCCCCHhhHHhHHhc------CCEEEEeCCCCCchhHHHHHHHcCCeEEEcchhhhhHHHHHHHHhhcCCCcee
Q 005218 518 NVVHVGVGSVTQSDVDLAQAC------GACIVGFNVKSPPTSVSQAATQAGIKILMHSIIYHLLDDFGNLVVDKAPGTFE 591 (708)
Q Consensus 518 ~Iv~~~VG~it~sDv~~A~~~------~a~Il~Fnv~~~~~~~~~~a~~~~V~i~~~~iIY~L~d~~~~~~~~~~~~~~~ 591 (708)
+|++++||+||++||.+|+++ +|+||||||++++++ +++|++.||+|++|+|||+|+|+++++|+++++|..+
T Consensus 376 ~v~~~~vg~i~~~dv~~a~~~~~~~~~~a~i~~fnv~~~~~~-~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~ 454 (594)
T 1g7s_A 376 PIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSA-AQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKK 454 (594)
T ss_dssp CCSEEEESSBCHHHHHHHHHHHTTCTTSCEEEEESCCBCHHH-HHHTSSSSSEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEecccCCCCHHHHHHHHhhhccCcCCCEEEEeCCcCCHHH-HHHHHHcCCeEEECCHHHHHHHHHHHHhhhccchhhh
Confidence 899999999999999999999 999999999999998 8999999999999999999999999999999988653
Q ss_pred ---eeeeece--eEe--eEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceecc
Q 005218 592 ---TQVAGEA--EVL--NIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAK 664 (708)
Q Consensus 592 ---~~~~g~a--~v~--~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~k 664 (708)
++++|.+ .|+ ++|+.++ ++||||+|++|++++|+++|+ |+|. |+|+|.||||+|+||+||++
T Consensus 455 ~~~~~~~~~~~~~i~~~~~f~~~~--------~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~~~k~~v~~~~~ 523 (594)
T 1g7s_A 455 KWMEAIIKPASIRLIPKLVFRQSK--------PAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQDKGENLKSASR 523 (594)
T ss_dssp HHHTTSCCCEEEEEEEEEEEECSS--------SEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEEETTEEESEEET
T ss_pred hhhheeeeeEEEEEecceEEcCCC--------CeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehhcccCccccccCC
Confidence 3455544 445 6998764 499999999999999999998 9995 99999999999999999999
Q ss_pred CCeEEEEEccc---CCCCCCCEEEEEEEEEecCcccc
Q 005218 665 GNECGLVIRDW---HDFQVGDIIQCLEQVLVKPKFIS 698 (708)
Q Consensus 665 G~ecgi~~~~~---~~~~~gD~ie~y~~~~~~~~~~~ 698 (708)
|+||||.|++| +||++||+|++|...+..+.+..
T Consensus 524 g~e~gi~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~ 560 (594)
T 1g7s_A 524 GQKVAMAIKDAVYGKTIHEGDTLYVDIPENHYHILKE 560 (594)
T ss_dssp TCCEEEEEETCCBTTTBCTTCEEEECCCHHHHHTTTS
T ss_pred CCEEEEEEeCcccCCCCCCCCEEEEEEEhHHHHHHHH
Confidence 99999999997 89999999999998777766653
No 4
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=100.00 E-value=7e-46 Score=416.82 Aligned_cols=294 Identities=17% Similarity=0.160 Sum_probs=203.4
Q ss_pred hhhhhhcccccccccCCCc-----ccccccCchhhhhccccc-------------CCccccCCCCcchhhhccCcccchh
Q 005218 5 QILKRSANARVVASKSLKY-----APSSITTSAESSCSCLQG-------------LRYHDVSMKVSLIRCFHASPELLAR 66 (708)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-------------~~~r~a~~geft~Raf~ngk~dl~~ 66 (708)
.++..++|+ ...+|.+. +|+|||+++.+...|+++ .|+|+|+|||||+|||+||||||+
T Consensus 65 ~~~~~~~~~--~~~iD~~l~~~f~~P~s~TgEd~~E~~~HGg~~v~~~~l~~~~~~g~r~A~pGEFt~RAflngk~dL~- 141 (476)
T 3gee_A 65 AHFGRLYDG--EEMVDEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLRLMLDNGCRLAEPGEFTRRAFLNGRIDLL- 141 (476)
T ss_dssp EEEEEEESS--SCEEEEEEEEEEBTTBSSSSSCEEEEEEECCHHHHHHHHHHHHHTTCEECCTTHHHHHHHHTTSSCHH-
T ss_pred EEEEEEecC--CcccceEEEEEecCCCCCCCCCeEEEECCCCHHHHHHHHHHHHHCCCeecCCcchhhhhhccCcCcHH-
Confidence 344455554 45666554 799999999999999763 599999999999999999999999
Q ss_pred hhhhhhhhhhhccccccccccccccCCCCCcccccCCCCCCcccccCCCceeecchhhHHHHHHHHhccCHHHHHHHHHh
Q 005218 67 RRDEDSFGLKTARRESNKGKFRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDILVN 146 (708)
Q Consensus 67 ~~~e~~~~li~a~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~la~~l~~~~~~l~~~L~~ 146 (708)
|||||+|||+| +|+.|+ ++|+.+|.|.|+..+..|++.|+.
T Consensus 142 -qaEav~dli~a-----------~t~~~~---------------------------~~a~~~l~G~ls~~i~~lr~~L~~ 182 (476)
T 3gee_A 142 -QAEAIGEMIHA-----------RTESAY---------------------------RTAVSQMKGDLSVRLGGLREQLIR 182 (476)
T ss_dssp -HHHHHHHHHHC-----------CSHHHH---------------------------HHHHHHHHTHHHHHHHHHHTHHHH
T ss_pred -HHHHHHHHHhC-----------CCHHHH---------------------------HHHHHhhCCcHHHHHHHHHHHHHH
Confidence 99999999999 999999 999999999999999999999999
Q ss_pred cccccccCCCCCChh----HHHHHHHH---hCCceee-ecCCCCCCCCCCCCEEEEEecCCCCchHHHHHhhcCccc-cc
Q 005218 147 VGEKVDSEFEPLSID----VAELVVME---LGFNVRR-IHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLV-AK 217 (708)
Q Consensus 147 ~~~~~e~~~~~~~~~----~~~~~~~~---~~~~~~~-l~~~~~~~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~ 217 (708)
+.+.+|...|+.+++ ....+... +...+.. +.....++.++++++|+|+|+||+|||||+|+|++.+.. .+
T Consensus 183 ~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs 262 (476)
T 3gee_A 183 SCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVS 262 (476)
T ss_dssp HHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHHHHCC--------
T ss_pred HHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccC
Confidence 888887544433322 11112111 1111111 122233445667889999999999999999999998764 58
Q ss_pred ccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhh--------hcccccccEEEEEEEccCCCCh----hHHHHHHHh
Q 005218 218 EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR--------KRGAAVTDIVVLVVAADDGVMP----QTLEAIAHA 285 (708)
Q Consensus 218 ~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~--------~~~~~~aDivllVvDa~~g~~~----q~~~~l~~l 285 (708)
+.+|+|++.....+.+ +|.++.||||||++.+...+ ..++..+|++++|+|++++... .+...+..+
T Consensus 263 ~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l 341 (476)
T 3gee_A 263 HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH 341 (476)
T ss_dssp ----------CEEEEE-TTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC
T ss_pred CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc
Confidence 8899999998888888 89999999999998765433 3467899999999999998776 445555544
Q ss_pred hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 286 NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 286 ~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
. ++|+|+|+||+|+........ +.+... +..+++++||++|.|+++|+++|.....
T Consensus 342 ~--~~piIvV~NK~Dl~~~~~~~~-~~l~~~--------~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 342 P--AAKFLTVANKLDRAANADALI-RAIADG--------TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp T--TSEEEEEEECTTSCTTTHHHH-HHHHHH--------HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred C--CCCEEEEEECcCCCCccchhH-HHHHhc--------CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 4 789999999999975432211 112211 0147999999999999999999988654
No 5
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=100.00 E-value=3.5e-45 Score=409.65 Aligned_cols=296 Identities=20% Similarity=0.243 Sum_probs=223.4
Q ss_pred hhhhhhhhcccccccccCCCc-----ccccccCchhhhhccccc-------------CCccccCCCCcchhhhccCcccc
Q 005218 3 WRQILKRSANARVVASKSLKY-----APSSITTSAESSCSCLQG-------------LRYHDVSMKVSLIRCFHASPELL 64 (708)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-------------~~~r~a~~geft~Raf~ngk~dl 64 (708)
|+.++..++||..+..+|.+. +|+|||+++.+...|+++ .|+|+|+|||||+|||+||||||
T Consensus 53 ~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg~~v~~~~l~~~~~~g~r~A~pGEFt~RAflngk~dL 132 (462)
T 3geh_A 53 HRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQLCLESGARLAQPGEFTLRAFLNGRLDL 132 (462)
T ss_dssp TEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCSSSHHHHHHHHHHHTTCEECCTTHHHHHHHHTTSCCH
T ss_pred cEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCceEEEECCCCHHHHHHHHHHHHHCCCeecCCchhhhhHHhcCCcCH
Confidence 445667788888888888876 599999999999999764 59999999999999999999999
Q ss_pred hhhhhhhhhhhhhccccccccccccccCCCCCcccccCCCCCCcccccCCCceeecchhhHHHHHHHHhccCHHHHHHHH
Q 005218 65 ARRRDEDSFGLKTARRESNKGKFRKREIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDIL 144 (708)
Q Consensus 65 ~~~~~e~~~~li~a~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~la~~l~~~~~~l~~~L 144 (708)
+ |||||+|||+| +|+.|+ ++|+.++.|.++..+..|++.|
T Consensus 133 ~--qaEav~dli~a-----------~t~~~~---------------------------~~a~~~l~g~~~~~~~~~r~~l 172 (462)
T 3geh_A 133 T--QAESIADLVGA-----------RSPQAA---------------------------QTALAGLQGKLAHPIRQLRANC 172 (462)
T ss_dssp H--HHHHHHHHHHC-----------CSHHHH---------------------------HHHHHHHHTTTHHHHHHHHHHH
T ss_pred H--HHHHHHHHHhC-----------CCHHHH---------------------------HHHHHHhchhHHHHHHHHHHHH
Confidence 9 99999999999 999999 9999999999999999999999
Q ss_pred HhcccccccCCCCC---Ch---h-HHHHHHHHhCCceee-ecCCCCCCCCCCCCEEEEEecCCCCchHHHHHhhcCccc-
Q 005218 145 VNVGEKVDSEFEPL---SI---D-VAELVVMELGFNVRR-IHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLV- 215 (708)
Q Consensus 145 ~~~~~~~e~~~~~~---~~---~-~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~- 215 (708)
+.+.+.+|...|+. ++ + ....+. .+...+.. +.....++.++.+++|+|+|+||+|||||+|+|++.++.
T Consensus 173 ~~~~a~iEa~iDf~ed~~~~~~~~~~~~i~-~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~ 251 (462)
T 3geh_A 173 LDILAEIEARIDFEEDLPPLDDEAIISDIE-NIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAI 251 (462)
T ss_dssp HHHHHHHHHHTTSSSSSCCCCTTTHHHHHH-HHHHHHHHHTTTHHHHHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSC
T ss_pred HHHHHHHHhhccccccCChhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCccc
Confidence 99887776332221 11 1 111111 11111111 122233455667889999999999999999999988776
Q ss_pred ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhh--------hcccccccEEEEEEEccCCCChhHHHHHHHhhh
Q 005218 216 AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR--------KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANA 287 (708)
Q Consensus 216 ~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~--------~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~ 287 (708)
.++.+++|+|+....+.+ +|.++.||||||++++.... ..++..+|++++|+|++++...+..+.+..+.
T Consensus 252 v~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~- 329 (462)
T 3geh_A 252 VTDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK- 329 (462)
T ss_dssp CSCCTTCCHHHHHHEEEE-TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT-
T ss_pred ccCCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc-
Confidence 477899999988877777 89999999999987764332 23678999999999999988887777776664
Q ss_pred cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 288 ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 288 ~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
+.|+++|+||+|+....... .+ ..+....+++++||++|.|+++|+++|.....
T Consensus 330 -~~piivV~NK~Dl~~~~~~~---~~-------~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 330 -HRPLILVMNKIDLVEKQLIT---SL-------EYPENITQIVHTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp -TSCEEEEEECTTSSCGGGST---TC-------CCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHT
T ss_pred -CCcEEEEEECCCCCcchhhH---HH-------HHhccCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47999999999996432111 11 11223458999999999999999999988653
No 6
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=100.00 E-value=5.1e-39 Score=361.34 Aligned_cols=274 Identities=19% Similarity=0.235 Sum_probs=211.7
Q ss_pred ccccccCchhhhhccccc-------------CCccccCCCCcchhhhccCcccchhhhhhhhhhhhhccccccccccccc
Q 005218 24 APSSITTSAESSCSCLQG-------------LRYHDVSMKVSLIRCFHASPELLARRRDEDSFGLKTARRESNKGKFRKR 90 (708)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~-------------~~~r~a~~geft~Raf~ngk~dl~~~~~e~~~~li~a~~~~~~~~~~~~ 90 (708)
+|.|||+++.+...|+++ .|+|+|+|||||+|||+||||||+ |+|+|+|||+| +
T Consensus 99 ~p~Sft~Ed~ve~~~hGg~~v~~~~l~~l~~~g~r~A~~Geft~raf~nGk~Dl~--qaE~i~dli~a-----------~ 165 (482)
T 1xzp_A 99 SPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKMDLT--SAEAVRDLIEA-----------K 165 (482)
T ss_dssp TTSSSSSSCEEEEEECSCHHHHHHHHHHHHTTTCEECCTTHHHHHHHHTTSSCHH--HHHHHHHHHHC-----------C
T ss_pred CCCcCCCCCEeeecCcCcHHHHHHHHHHHHHcCCEeCCCCCcCCcCCCcCCcCHH--HHHHHHHHHhh-----------c
Confidence 599999999998888653 599999999999999999999999 99999999999 9
Q ss_pred cCCCCCcccccCCCCCCcccccCCCceeecchhhHHHHHHHHhccCHHHHHHHHHhccccccc----CCCCCChhHHHHH
Q 005218 91 EIGKPPVEAAYVPPKPKKTVKSSQDKTVDIFEGMAVVELAKQSGASITTLQDILVNVGEKVDS----EFEPLSIDVAELV 166 (708)
Q Consensus 91 t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~la~~l~~~~~~l~~~L~~~~~~~e~----~~~~~~~~~~~~~ 166 (708)
|+.++ ++++.++.|.++..+..|++.|+.+.+.++. +++ ++....+ +
T Consensus 166 t~~~~---------------------------~~a~~~l~g~l~~~~~~~r~~l~~~~~~ie~~idf~ee-i~~~~~~-i 216 (482)
T 1xzp_A 166 SETSL---------------------------KLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDE-IETNTGE-V 216 (482)
T ss_dssp SHHHH---------------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCHHH-H
T ss_pred cHHHH---------------------------HHHHHhcchhHhHHHHHHHHHHHHHHHHhhhcCCCCcc-ccchHHH-H
Confidence 99988 8999999999999999999998887776652 222 2211111 1
Q ss_pred HHH---hCCceee-ecCCCCCCCCCCCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEE
Q 005218 167 VME---LGFNVRR-IHSSEGTEILPRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITF 241 (708)
Q Consensus 167 ~~~---~~~~~~~-l~~~~~~~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~l 241 (708)
... +...+.. +.....++.++++++|+|+|+||||||||+|+|++.++. .++.++||+|+....+.+ ++.++.|
T Consensus 217 ~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-~g~~~~l 295 (482)
T 1xzp_A 217 VTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RGILFRI 295 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-CCeEEEE
Confidence 111 1111111 122233445567889999999999999999999988765 588899999999888888 8999999
Q ss_pred eeCCCcc-hhhh--------hhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhh
Q 005218 242 LDTPGHA-AFSA--------MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQ 312 (708)
Q Consensus 242 iDTpG~~-~f~~--------~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~ 312 (708)
|||||++ .+.. ....+++.+|++|+|+|++++...++.+.+..+ .++|+++|+||+|+..... .+.
T Consensus 296 ~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~---~~~ 370 (482)
T 1xzp_A 296 VDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKIN---EEE 370 (482)
T ss_dssp EESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCC---HHH
T ss_pred EECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccC---HHH
Confidence 9999998 6542 233567899999999999988777777766655 4789999999999964311 111
Q ss_pred hhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 313 LGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 313 l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
+... .....+++++||++|.|+++|+++|....
T Consensus 371 ~~~~------~~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 371 IKNK------LGTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp HHHH------HTCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred HHHH------hcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 1111 01135799999999999999999998753
No 7
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=99.97 E-value=8.1e-33 Score=239.69 Aligned_cols=98 Identities=46% Similarity=0.716 Sum_probs=93.7
Q ss_pred eeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEE
Q 005218 591 ETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGL 670 (708)
Q Consensus 591 ~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi 670 (708)
+|+++|+|+|+++|++++.| +||||+|++|++++|+++||+|||.+||+|+|.||||+|+||+||++|+||||
T Consensus 2 ~E~~~G~AeVr~vF~isk~g-------~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi 74 (99)
T 1d1n_A 2 EEKVIGQAEVRQTFKVSKVG-------TIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGL 74 (99)
T ss_dssp CCCEEEEEEECCCCCCSSSC-------CCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEE
T ss_pred eEEEEEEEEEEEEEEcCCce-------EEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEE
Confidence 57899999999999998776 89999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCCCEEEEEEEEEecCc
Q 005218 671 VIRDWHDFQVGDIIQCLEQVLVKPK 695 (708)
Q Consensus 671 ~~~~~~~~~~gD~ie~y~~~~~~~~ 695 (708)
.|++|+||++||+||||+.++++++
T Consensus 75 ~l~~~~dik~GD~Ie~ye~~ev~r~ 99 (99)
T 1d1n_A 75 TIKNFNDIKEGDVIEAYVMQEVARA 99 (99)
T ss_dssp ECTTCSSCSSCSEEEEECCSCCCC-
T ss_pred EEcCcCCCCCCCEEEEEEEEEEcCC
Confidence 9999999999999999999888763
No 8
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.97 E-value=2.4e-32 Score=244.50 Aligned_cols=108 Identities=31% Similarity=0.581 Sum_probs=100.1
Q ss_pred CCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCC
Q 005218 587 PGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGN 666 (708)
Q Consensus 587 ~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ 666 (708)
.|.++|+++|+|+|+++|++++.|. ..+||||+|++|+|++++++||+|||.+||+|+|.||||+|+||+||++|+
T Consensus 2 ~~~~~E~v~G~AeVr~vF~isk~g~----~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ 77 (120)
T 2crv_A 2 SSGSSGYPIGEASILATFTVTEGKK----KIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGM 77 (120)
T ss_dssp CCSCSSCEEEEEEEEEEEEEEETTE----EEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTC
T ss_pred CCCcEEEEEEEEEEeEEEEeCCCCc----eeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCC
Confidence 3567899999999999999997651 124999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcccC-CCCCCCEEEEEEEEEecCcccc
Q 005218 667 ECGLVIRDWH-DFQVGDIIQCLEQVLVKPKFIS 698 (708)
Q Consensus 667 ecgi~~~~~~-~~~~gD~ie~y~~~~~~~~~~~ 698 (708)
||||.|++|+ ||++||+||||+++++++++.-
T Consensus 78 ECGi~l~~fniDik~GDiIE~ye~~ev~r~l~w 110 (120)
T 2crv_A 78 DCGLSLDEEKVEFKPGDQVICYEENKVPTKTSW 110 (120)
T ss_dssp EEEEECSCTTSCCCTTEEEEEECCSCCCCCCCC
T ss_pred EEEEEEccCCCCCCCCCEEEEEEEEEEeeEecc
Confidence 9999999999 9999999999999999998763
No 9
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=5.6e-30 Score=285.67 Aligned_cols=251 Identities=25% Similarity=0.348 Sum_probs=193.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccc-------------------------------ccccCceEEeeeEEEEEecC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-------------------------------AKEAGGITQHMGAFVVGMST 235 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~-------------------------------~~~~~gtT~di~~~~v~~~~ 235 (708)
...++|+++||+|+|||||+|+|++.... ....+|+|.+.....+.. .
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~ 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-E 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-C
Confidence 35689999999999999999999654221 123378999998888887 7
Q ss_pred CeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCC-------hhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCc-
Q 005218 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVM-------PQTLEAIAHANAANVP-IVVAINKCDKPAADP- 306 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~-------~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~- 306 (708)
++.++|||||||++|...+..+++.+|++|||+|++++.+ +|+.+++..+...++| +|+|+||+|+...+.
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 8899999999999999999999999999999999999876 6999999999889999 999999999964322
Q ss_pred -ch---hhhhhhhcccchhccC----CcceEEEEeeecCCCchhHHH--------HHHHHHHHc-ccccccCCCcceeEE
Q 005218 307 -ER---VKNQLGAEGLELEDWG----GKVQVVEVSAVKKTGLDDLEV--------ALLLQAEMM-NLKARVDGPAQAYVV 369 (708)
Q Consensus 307 -~~---~~~~l~~~~~~~~~~~----~~~~vi~vSAktg~GI~~L~~--------~I~~~~~~~-~~~~~~~~p~~~~V~ 369 (708)
.+ +.+++... +..++ ..++++++||++|.|++++.+ .|...++.. .+....+.|+...|.
T Consensus 174 ~~~~~~i~~~~~~~---l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~ 250 (439)
T 3j2k_7 174 NERYEECKEKLVPF---LKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIV 250 (439)
T ss_pred HHHHHHHHHHHHHH---HHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEEEEE
Confidence 11 11222111 11111 246899999999999999665 133333332 233345778999999
Q ss_pred EEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEE--EeccCCCC-CCCCeEEEeC
Q 005218 370 EARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVE--IEGLKGLP-MAGDDIIVVD 444 (708)
Q Consensus 370 e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~--i~gl~~~~-~~Gd~~~~v~ 444 (708)
+++. +.|++++|+|.+|+|++||.|++++. ..+|++|+. +++.+++|.||+.|. +.|++... ..|+.+....
T Consensus 251 ~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~ 327 (439)
T 3j2k_7 251 DKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS-DDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPS 327 (439)
T ss_pred EEEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE-CCeEcCEecCCCcceEEEeccchhhcCCcEEecCCC
Confidence 8864 68999999999999999999999875 457999984 677999999999998 55665322 4677766443
No 10
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.97 E-value=9.1e-30 Score=292.05 Aligned_cols=425 Identities=19% Similarity=0.239 Sum_probs=290.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc---------------cccCceEEeeeEEEEEec----CCeeEEEeeCCCcc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA---------------KEAGGITQHMGAFVVGMS----TGASITFLDTPGHA 248 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~---------------~~~~gtT~di~~~~v~~~----~g~~v~liDTpG~~ 248 (708)
+.++|+|+||+|||||||+++|++..... ....|+|.......+.+. ..+.++|||||||.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34689999999999999999997632111 123577776555555442 23789999999999
Q ss_pred hhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcce
Q 005218 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQ 328 (708)
Q Consensus 249 ~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 328 (708)
+|...+.++++.+|++|+|+|++++...|+...|..+...++|+|+|+||+|+.+.+.++..+++.+.. .+ ...+
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~l-g~----~~~~ 159 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVL-GL----DPEE 159 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTS-CC----CGGG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhh-CC----Cccc
Confidence 999999999999999999999999999999999998888999999999999998766555544443321 00 1125
Q ss_pred EEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccc--eEE
Q 005218 329 VVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWG--RIR 406 (708)
Q Consensus 329 vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~--kVr 406 (708)
++++||++|.|+++|+++|...+ +.+..+++.|+.+.|++++.+++.|.++.+++.+|++++||.|.+.+... +|+
T Consensus 160 vi~vSAktg~GI~~Lle~I~~~l--p~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~ 237 (600)
T 2ywe_A 160 AILASAKEGIGIEEILEAIVNRI--PPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVT 237 (600)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECC
T ss_pred EEEEEeecCCCchHHHHHHHHhc--ccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeee
Confidence 89999999999999999998754 23334567899999999999999999999999999999999999987433 444
Q ss_pred EEecc--cCCcccccCCCCcEEEe-ccCCC--CCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCC
Q 005218 407 AIRDM--VGKSTDKARPAMPVEIE-GLKGL--PMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSED 481 (708)
Q Consensus 407 ~i~~~--~~~~v~~a~~g~~V~i~-gl~~~--~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (708)
.+... +..++.++.+|+.+.+. |++++ ...||++...++... . .+...
T Consensus 238 ~i~~~~~~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~-----~-----------------~l~~~----- 290 (600)
T 2ywe_A 238 EVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTK-----E-----------------PVPGF----- 290 (600)
T ss_dssp EEEEESSSEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCS-----S-----------------CCSCC-----
T ss_pred cccccCCCceECCEEecCceeeeeccccchhhccCCCEEEeCCCccc-----c-----------------ccCCC-----
Confidence 55432 34578899999988775 65432 268999986654210 0 00000
Q ss_pred CCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCchh-----HHH
Q 005218 482 VPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTS-----VSQ 556 (708)
Q Consensus 482 ~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~~~-----~~~ 556 (708)
....+.+...|.....+..+.|.++|.++..+++.+.+-. .+..+.+.||.+...... +.+
T Consensus 291 ~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~~--------------et~~~l~~g~~~~~~G~lHlei~~er 356 (600)
T 2ywe_A 291 QPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEP--------------ESSPALGMGFRVGFLGLLHMEIVQER 356 (600)
T ss_dssp CCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEEE--------------EEETTTEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEEE--------------CCccccccceEEEeccHHHHHHHHHH
Confidence 0123567778888889999999999999987776665541 344566778877665553 456
Q ss_pred HHHHcCCeEEEcc--hhhhhH-H-HHHHHHh----hcCCCc-----eeeeeeeceeEe--e-----EEE-eCCCCCCCCC
Q 005218 557 AATQAGIKILMHS--IIYHLL-D-DFGNLVV----DKAPGT-----FETQVAGEAEVL--N-----IFE-LKGRSKAKGD 615 (708)
Q Consensus 557 ~a~~~~V~i~~~~--iIY~L~-d-~~~~~~~----~~~~~~-----~~~~~~g~a~v~--~-----vf~-~~~~~~~~~~ 615 (708)
+.++.|+.+.... |+|+-- . +=+ ++. ..+|.. ...+++=+++|. . +.. ++.++
T Consensus 357 l~re~~~~v~~~~P~V~yreti~~~g~-~~~~~~p~~~p~~~~~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rr----- 430 (600)
T 2ywe_A 357 LEREYGVKIITTAPNVIYRVKKKFTDE-VIEVRNPMDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKR----- 430 (600)
T ss_dssp HHHHSCCCEEECCCEECEEEEETTCSS-CEEESSGGGSCSCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTT-----
T ss_pred HHhhcCceEEEEeeeEEEEEEecCCCc-EEEEeChhhCCCCCcccccccCCeEEEEEEecHHHHHHHHHHHHHcC-----
Confidence 6667799888877 999741 1 000 000 001111 111122112111 1 111 12222
Q ss_pred CceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeee-eccccccceeccCC-eEEEEEcccCCC
Q 005218 616 DVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISL-KREKQDVDTVAKGN-ECGLVIRDWHDF 678 (708)
Q Consensus 616 ~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~sl-k~~k~~V~ev~kG~-ecgi~~~~~~~~ 678 (708)
..+.|+...+| .. -.+.|+-....| ..+..+.+...+|. .+-..|.+|...
T Consensus 431 -G~~~~~~~~~~-----~~------~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~ 483 (600)
T 2ywe_A 431 -GIQKNMTYLDP-----NT------VYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPS 483 (600)
T ss_dssp -CEEEEEEEEET-----TE------EEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred -cEEeccEEcCC-----CE------EEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEc
Confidence 37888877543 11 124567788888 89999999999998 477788777655
No 11
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.96 E-value=3e-29 Score=288.24 Aligned_cols=435 Identities=19% Similarity=0.226 Sum_probs=287.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc---------------ccccCceEEeeeEEEEEec----CCeeEEEeeCCCcc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV---------------AKEAGGITQHMGAFVVGMS----TGASITFLDTPGHA 248 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~---------------~~~~~gtT~di~~~~v~~~----~g~~v~liDTpG~~ 248 (708)
+.++|+|+||+|||||||+++|+..... .....|+|.......+.+. .++.++|||||||.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 3468999999999999999999863211 1123577877666666552 24789999999999
Q ss_pred hhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcce
Q 005218 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQ 328 (708)
Q Consensus 249 ~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~ 328 (708)
+|...+.++++.+|++|+|+|++++...|+...|..+...++|+|+|+||+|+.+.+.++..+++.+.. . + ...+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~l-g---~-~~~~ 157 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIV-G---I-DATD 157 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHT-C---C-CCTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHh-C---C-Ccce
Confidence 999999999999999999999999999999999998888899999999999998766555544443321 0 0 1125
Q ss_pred EEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccccc--eEE
Q 005218 329 VVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHEWG--RIR 406 (708)
Q Consensus 329 vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~~~--kVr 406 (708)
++++||++|.|+++|+++|.... +.+..+++.|+.+.|+++..+++.|.++.+++.+|+|++||.+.+.+... +|.
T Consensus 158 vi~vSAktg~GI~~Ll~~I~~~l--p~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~ 235 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLVRDI--PPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNAD 235 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECC
T ss_pred EEEeecccCCCchhHHHHHhhcC--CCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEe
Confidence 89999999999999999998764 33334567899999999999999999999999999999999999976432 444
Q ss_pred EEec--ccCCcccccCCCCcEEEe-ccC---CCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHHhhhccCCCC
Q 005218 407 AIRD--MVGKSTDKARPAMPVEIE-GLK---GLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEERTENLEPSE 480 (708)
Q Consensus 407 ~i~~--~~~~~v~~a~~g~~V~i~-gl~---~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (708)
.+.. .....++++.+|+.+.+. |++ ++ ..||++...++... . .+....
T Consensus 236 ~i~~~~~~~~~~~~~~aGdi~~~~~gi~~~~~~-~~GDtl~~~~~~~~-----~-----------------~l~~~~--- 289 (599)
T 3cb4_D 236 RLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGA-PVGDTLTLARNPAE-----K-----------------ALPGFK--- 289 (599)
T ss_dssp EEEEESSSEEECSEECTTCEEEEECCCSSGGGS-CTTCEEEESSSCCS-----S-----------------CCTTCC---
T ss_pred eeeeccCCceECCEEcCCCeeEeeccccccccC-ccCCEeeecCCccc-----c-----------------cccccc---
Confidence 4443 235678899999988774 554 43 68999986654210 0 000000
Q ss_pred CCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCch-----hHH
Q 005218 481 DVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPT-----SVS 555 (708)
Q Consensus 481 ~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~~-----~~~ 555 (708)
...+.+...+-....+..+.+.++|.++..++..+.+- ..+..+.+.+|.+..... ++.
T Consensus 290 --~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--------------~et~~~l~~gfr~g~lG~lhlei~~e 353 (599)
T 3cb4_D 290 --KVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--------------PESSSALGFGFRCGFLGLLHMEIIQE 353 (599)
T ss_dssp --CCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--------------EEEETTTEEEEEEEESSHHHHHHHHH
T ss_pred --CCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--------------eccccccccceEEEeccHHHHHHHHH
Confidence 12345556666667778999999999987776655543 234456678887776655 345
Q ss_pred HHHHHcCCeEEEcc--hhhhh--HHH----HHHHHhhcCCCc----eeeeeeecee--EeeEEE------eCCCCCCCCC
Q 005218 556 QAATQAGIKILMHS--IIYHL--LDD----FGNLVVDKAPGT----FETQVAGEAE--VLNIFE------LKGRSKAKGD 615 (708)
Q Consensus 556 ~~a~~~~V~i~~~~--iIY~L--~d~----~~~~~~~~~~~~----~~~~~~g~a~--v~~vf~------~~~~~~~~~~ 615 (708)
++.++.|+.+.... |+|+- -+. +.+ -..+|.. ...+++=+++ |..-|- ++.++
T Consensus 354 rl~~e~~~~~~~~~P~V~yreti~~g~~~~~~~--p~~~p~~~~~~~llEP~~~~~i~~P~e~~G~v~~~~~~rr----- 426 (599)
T 3cb4_D 354 RLEREYDLDLITTAPTVVYEVETTSREVIYVDS--PSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKR----- 426 (599)
T ss_dssp HHHHTSCCCEEECCCEECEEEEESSSCEEEESS--GGGSCCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTT-----
T ss_pred HHHHHcCceEEEEeeeEEEEEEecCCceEEecC--hhhCCCccccchhhccceEEEEEeCHHHHHHHHHHHHHcC-----
Confidence 56666688888876 88874 110 000 0011111 1111221111 111110 11121
Q ss_pred CceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeee-eccccccceeccCC-eEEEEEcccCCC--------CCCCEEE
Q 005218 616 DVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISL-KREKQDVDTVAKGN-ECGLVIRDWHDF--------QVGDIIQ 685 (708)
Q Consensus 616 ~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~sl-k~~k~~V~ev~kG~-ecgi~~~~~~~~--------~~gD~ie 685 (708)
..+.|..-.+| .. .+.|+-....| ..+..+.+...+|. .+-..|.+|... --|+.+.
T Consensus 427 -G~~~~~~~~~~------~~------~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~~~~~~~~~~g~~v~ 493 (599)
T 3cb4_D 427 -GVQTNMVYHGN------QV------ALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVD 493 (599)
T ss_dssp -CEEEEEECCTT------EE------EEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEECCEEEEEEEETTEEEE
T ss_pred -cEEeCcEecCC------eE------EEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEecccccccccCCcEec
Confidence 26666655322 11 23355577888 78999999999997 567777777655 2467777
Q ss_pred EEEEEE
Q 005218 686 CLEQVL 691 (708)
Q Consensus 686 ~y~~~~ 691 (708)
++-.+-
T Consensus 494 ~~~~~~ 499 (599)
T 3cb4_D 494 ALALIT 499 (599)
T ss_dssp EEEEEE
T ss_pred ccceec
Confidence 765443
No 12
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.96 E-value=2.5e-29 Score=283.89 Aligned_cols=256 Identities=21% Similarity=0.239 Sum_probs=192.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc-------------------------------cccccCceEEeeeEEEEEecCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL-------------------------------VAKEAGGITQHMGAFVVGMSTG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~-------------------------------~~~~~~gtT~di~~~~v~~~~g 236 (708)
..++|+++|++|+|||||+|+|++... .....+|+|.+.....+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 457999999999999999999975521 1123468999988888887 88
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC-------CChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcch
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-------VMPQTLEAIAHANAANVP-IVVAINKCDKPAADPER 308 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g-------~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~ 308 (708)
..+.|||||||++|...+..+++.+|++|+|+|++++ ...|+.+++..+...++| +|+|+||+|+.+.+...
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 9999999999999999999999999999999999987 567899998888877754 99999999997644332
Q ss_pred hh---hhhhhcccchhccCCcceEEEEeeecCCCchh---------------HHHHHHHHHHHcc---cccccCCCccee
Q 005218 309 VK---NQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD---------------LEVALLLQAEMMN---LKARVDGPAQAY 367 (708)
Q Consensus 309 ~~---~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~---------------L~~~I~~~~~~~~---~~~~~~~p~~~~ 367 (708)
.. ..+......+......++++++||++|.|+++ |++.|....+... +....+.|+...
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~ 270 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFS 270 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEE
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEEE
Confidence 22 22221110000001246899999999999985 4555554432221 234467899999
Q ss_pred EEEEEeeC---CCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEeccc-------CCcccccCCCCcEEEe--c--cC
Q 005218 368 VVEARLDK---GRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMV-------GKSTDKARPAMPVEIE--G--LK 431 (708)
Q Consensus 368 V~e~~~~~---~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~-------~~~v~~a~~g~~V~i~--g--l~ 431 (708)
|.+++... +.|++++|+|.+|+|++||.|.+++. ..+|++|...+ ++.+++|.||+.|.+. + ..
T Consensus 271 v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~ 350 (483)
T 3p26_A 271 VLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPE 350 (483)
T ss_dssp EEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCGG
T ss_pred EEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecccc
Confidence 99998876 58999999999999999999999884 45799998664 5899999999999883 2 34
Q ss_pred CCCCCCCeEEEeCC
Q 005218 432 GLPMAGDDIIVVDS 445 (708)
Q Consensus 432 ~~~~~Gd~~~~v~~ 445 (708)
++ ..||++....+
T Consensus 351 di-~rG~vl~~~~~ 363 (483)
T 3p26_A 351 DI-QNGDLAASVDY 363 (483)
T ss_dssp GC-CTTCEEECTTC
T ss_pred cC-CceEEEEcCCC
Confidence 44 57998875544
No 13
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.96 E-value=2.3e-29 Score=277.38 Aligned_cols=245 Identities=29% Similarity=0.312 Sum_probs=192.5
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcc----------------cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA 252 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~----------------~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~ 252 (708)
..+|+++||+|||||||+++|++... ......|+|.+.....+.. .+..++|||||||++|..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHADYVK 81 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHHHHH
Confidence 46899999999999999999986311 0122578999887766665 778999999999999999
Q ss_pred hhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcch---hhhhhhhcccchhccC---C
Q 005218 253 MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPER---VKNQLGAEGLELEDWG---G 325 (708)
Q Consensus 253 ~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~---~~~~l~~~~~~~~~~~---~ 325 (708)
.+..+++.+|++|+|+|++++..+|+.+++..+...++| +|+++||+|+.+ +.+. +..++.+. +..++ .
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~~~~~~~~~~~~---l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEMVELVELEIREL---LTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHHHHHHHHHHHHH---HHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHHHHHHHHHHHHHH---HHHcCCCcc
Confidence 999999999999999999999999999999888888999 789999999974 2211 11122111 11111 2
Q ss_pred cceEEEEeeecCCC----------chhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCE
Q 005218 326 KVQVVEVSAVKKTG----------LDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQH 395 (708)
Q Consensus 326 ~~~vi~vSAktg~G----------I~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~ 395 (708)
.++++++||++|.| +++|++.|..... .+..+.+.|+..+|.+++.+++.|++++|+|.+|+|++||.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p--~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~ 235 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP--VPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDE 235 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC--CCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCE
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC--CCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCE
Confidence 46999999999875 7888888876432 23334567899999999999999999999999999999999
Q ss_pred EEEccc----cceEEEEecccCCcccccCCCCcEEEe--ccC--CCCCCCCeEEE
Q 005218 396 VVVGHE----WGRIRAIRDMVGKSTDKARPAMPVEIE--GLK--GLPMAGDDIIV 442 (708)
Q Consensus 396 v~~g~~----~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~--~~~~~Gd~~~~ 442 (708)
|.+.+. ..+|++|.. +++++++|.||+.|.+. |++ ++ ..|+++..
T Consensus 236 v~~~~~~~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~~i~~~~i-~~G~~l~~ 288 (397)
T 1d2e_A 236 CEFLGHSKNIRTVVTGIEM-FHKSLDRAEAGDNLGALVRGLKREDL-RRGLVMAK 288 (397)
T ss_dssp EEEEETTEEEEEEEEEEEE-TTEEESEEETTCEEEEEESSCCGGGC-CTTCEEES
T ss_pred EEEeCCCCCeEEEEEEEEE-CCcccCEecCCCceEEEecccchhcc-CceeEEeC
Confidence 987553 458999974 56889999999998876 553 33 57888763
No 14
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.96 E-value=1.7e-29 Score=279.10 Aligned_cols=246 Identities=30% Similarity=0.340 Sum_probs=192.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC--------ccc---------ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT--------SLV---------AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~--------~~~---------~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
..++|+++||+|+|||||+++|++. .+. ....+|+|.+.....+.. .+..++|||||||++|
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHHH
Confidence 4579999999999999999999873 111 012468888877666665 7789999999999999
Q ss_pred hhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcch---hhhhhhhcccchhccC--
Q 005218 251 SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPER---VKNQLGAEGLELEDWG-- 324 (708)
Q Consensus 251 ~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~---~~~~l~~~~~~~~~~~-- 324 (708)
...+..+++.+|++|+|+|++++..+|+.+++..+...++| +++|+||+|+.+ +.+. +..++... +..++
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~~~~~~~~~~~~~~---l~~~~~~ 164 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDL---LNQYEFP 164 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CHHHHHHHHHHHHHH---HHHTTSC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-cHHHHHHHHHHHHHH---HHHhccc
Confidence 99999999999999999999999999999999988888999 899999999974 2221 11122111 11111
Q ss_pred -CcceEEEEeeecCCC------------------chhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEE
Q 005218 325 -GKVQVVEVSAVKKTG------------------LDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIV 385 (708)
Q Consensus 325 -~~~~vi~vSAktg~G------------------I~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V 385 (708)
...+++++||++|.| +++|++.|..... .+..+.+.|+..+|.+++..++.|.+++|+|
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp--~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v 242 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP--TPVRDVDKPFLMPVEDVFTITGRGTVATGRI 242 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC--CCCCCCSSCCEEECCEEEEETTTEEEEEEEC
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC--CCCCCCCCCcEEEEEEEEEcCCCceEEEEEE
Confidence 246899999999987 6677777765432 2333457789999999999999999999999
Q ss_pred EeeEEcCCCEEEEccc-----cceEEEEecccCCcccccCCCCcEEEe--ccC--CCCCCCCeEEE
Q 005218 386 KAGTLVCGQHVVVGHE-----WGRIRAIRDMVGKSTDKARPAMPVEIE--GLK--GLPMAGDDIIV 442 (708)
Q Consensus 386 ~~G~L~~gd~v~~g~~-----~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~--~~~~~Gd~~~~ 442 (708)
.+|+|++||.|.+.+. ..+|++|. ..++++++|.||+.|.+. |++ ++ ..||++..
T Consensus 243 ~~G~l~~gd~v~~~~~~~~~~~~~V~~i~-~~~~~~~~a~aG~~v~~~l~g~~~~~i-~~G~~l~~ 306 (405)
T 2c78_A 243 ERGKVKVGDEVEIVGLAPETRKTVVTGVE-MHRKTLQEGIAGDNVGVLLRGVSREEV-ERGQVLAK 306 (405)
T ss_dssp CBSEEETTCEEEEESSSSSCEEEEEEEEE-ETTEEESEEETTCEEEEEESSCCTTTC-CTTCEEES
T ss_pred ecccccCCCEEEEeCCCCCeeeEEEEEEE-ECCcccCEEcCCCEEEEEECCCcHhhc-CceEEEEc
Confidence 9999999999988764 35799997 457899999999998876 553 33 57888763
No 15
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.96 E-value=3.9e-29 Score=284.21 Aligned_cols=341 Identities=17% Similarity=0.179 Sum_probs=246.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc----------------------ccccCceEEeeeEEEEEecCCeeEEEeeCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV----------------------AKEAGGITQHMGAFVVGMSTGASITFLDTP 245 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~----------------------~~~~~gtT~di~~~~v~~~~g~~v~liDTp 245 (708)
+.++|+|+||+|||||||+|+|+..... ....+|+|.+.....+.+ .++.++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 4579999999999999999999622111 112357777777777777 89999999999
Q ss_pred CcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-ccch----
Q 005218 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GLEL---- 320 (708)
Q Consensus 246 G~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~~~---- 320 (708)
||.+|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+...++.+. +...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~ 170 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVT 170 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999766544333332210 0000
Q ss_pred --------------------------------------------------------------------------hccCCc
Q 005218 321 --------------------------------------------------------------------------EDWGGK 326 (708)
Q Consensus 321 --------------------------------------------------------------------------~~~~~~ 326 (708)
-..+..
T Consensus 171 ~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 250 (528)
T 3tr5_A 171 WPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGEL 250 (528)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSE
T ss_pred cccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCce
Confidence 000123
Q ss_pred ceEEEEeeecCCCchhHHHHHHHHHHHccccc-------ccCCCcceeEEEEEe--eC-CCCcEEEEEEEeeEEcCCCEE
Q 005218 327 VQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-------RVDGPAQAYVVEARL--DK-GRGPLTTAIVKAGTLVCGQHV 396 (708)
Q Consensus 327 ~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~-------~~~~p~~~~V~e~~~--~~-~~G~v~~~~V~~G~L~~gd~v 396 (708)
+|++++||++|.|+++|+++|...+..+.... +.+.|+.++|+++.. ++ ++|.++.++|.+|+|++|+.|
T Consensus 251 ~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v 330 (528)
T 3tr5_A 251 TPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKA 330 (528)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEEE
T ss_pred eEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCCCEE
Confidence 48999999999999999999998754332211 125789999999875 77 889999999999999999999
Q ss_pred EEccccc--eEEEEe---cccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHH
Q 005218 397 VVGHEWG--RIRAIR---DMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEE 471 (708)
Q Consensus 397 ~~g~~~~--kVr~i~---~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 471 (708)
+..+... +|.++. ......+++|.||+.+.+.++.++ .+||++..-.. + .+
T Consensus 331 ~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~-~~GDtl~~~~~------~-~~---------------- 386 (528)
T 3tr5_A 331 YHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTI-QIGDTFTQGER------F-KF---------------- 386 (528)
T ss_dssp EETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSC-CTTCEEESSCC------C-CB----------------
T ss_pred EecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCC-ccCCEEcCCCC------c-cc----------------
Confidence 9987543 344443 335568899999999999999886 79999974110 0 00
Q ss_pred hhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCc
Q 005218 472 RTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPP 551 (708)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~ 551 (708)
... .. -.+.+..-|.+...+..+.+...|.+|..++. +.+..-. .++..||++==.+.-
T Consensus 387 --~~~----~~-~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~-~~~~~~~-------------~~~~~il~~~G~lhl 445 (528)
T 3tr5_A 387 --TGI----PN-FASELFRLVRLKDPLKQKALLKGLTQLSEEGA-TQLFRPL-------------DSNELILGAVGLLQF 445 (528)
T ss_dssp --CCC----EE-ECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-CEEEEET-------------TCCCEEEEESSTHHH
T ss_pred --CCC----CC-CCCCEEEEEEECChhHHHHHHHHHHHHHhcCC-eEEEEcC-------------CCCCEEEEEEcHHHH
Confidence 000 00 12455666788888999999999998876653 3443321 146778877544443
Q ss_pred hh-HHHHHHHcCCeEEEcchhhhh
Q 005218 552 TS-VSQAATQAGIKILMHSIIYHL 574 (708)
Q Consensus 552 ~~-~~~~a~~~~V~i~~~~iIY~L 574 (708)
++ +.++.++.||.+.....-|..
T Consensus 446 ev~~~rL~~ey~v~v~~~~~~v~~ 469 (528)
T 3tr5_A 446 DVVAYRLENEYNVKCVYESVNVVT 469 (528)
T ss_dssp HHHHHHHHHHHCCCEEEECCSCCE
T ss_pred HHHHHHHHHHhCcEEEEecCceEE
Confidence 33 345666678888765554443
No 16
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.96 E-value=7.7e-30 Score=287.65 Aligned_cols=251 Identities=23% Similarity=0.332 Sum_probs=193.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc-------ccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhccccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS-------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAV 260 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~-------~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~ 260 (708)
+.++|+++||+|+|||||+++|++.. ......+|+|.+.....+.+ ++..++|||||||++|...+..++..
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHHHHHHHHHHHhh
Confidence 45799999999999999999999876 33456789999988877777 88999999999999999999999999
Q ss_pred ccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 261 aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
+|++|+|+|++++..+|+.+++..+...++|+|+|+||+|+.+.. .+...+++.+.......+ ...+++++||++|.|
T Consensus 97 aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~vSA~~g~g 175 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL-KNSSIIPISAKTGFG 175 (482)
T ss_dssp CCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG-GGCCEEECCTTTCTT
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc-ccceEEEEECcCCCC
Confidence 999999999999999999999999888999999999999997421 111222222110000011 146899999999999
Q ss_pred chhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCccc
Q 005218 340 LDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTD 417 (708)
Q Consensus 340 I~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~ 417 (708)
+++|+++|...+..+....+.+.|+..++.+++..++.|+++++++.+|++++||.|.+.+. ..+|++|+. .++.++
T Consensus 176 I~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~~~~v~ 254 (482)
T 1wb1_A 176 VDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQY-FKESVM 254 (482)
T ss_dssp HHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCG-GGSCBC
T ss_pred HHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEE-CCeEee
Confidence 99999999998764433444567888888999999999999999999999999999999763 468999984 577899
Q ss_pred ccCCCCcEEEe--ccCC-CCCCCCeEE
Q 005218 418 KARPAMPVEIE--GLKG-LPMAGDDII 441 (708)
Q Consensus 418 ~a~~g~~V~i~--gl~~-~~~~Gd~~~ 441 (708)
+|.||+.|.+. |++. ....||.+.
T Consensus 255 ~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 255 EAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp CCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EecCCCEEEEEecCCCHhhccccceEe
Confidence 99999998775 6543 226788773
No 17
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.96 E-value=8.3e-29 Score=270.15 Aligned_cols=236 Identities=19% Similarity=0.211 Sum_probs=188.4
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa 270 (708)
+|+++||+|+|||||+++|+ ..|+|.+.....+.+ .++.++|||||||++|...+..+++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECS-SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEec-CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 89999999999999999998 568888888887777 78899999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHhhhcCCCE-EEEEe-CCCCCCCCc-chhhhhhhhcccchhccC-CcceEEE--Eeeec---CCCch
Q 005218 271 DDGVMPQTLEAIAHANAANVPI-VVAIN-KCDKPAADP-ERVKNQLGAEGLELEDWG-GKVQVVE--VSAVK---KTGLD 341 (708)
Q Consensus 271 ~~g~~~q~~~~l~~l~~~~~pi-IvViN-K~Dl~~~~~-~~~~~~l~~~~~~~~~~~-~~~~vi~--vSAkt---g~GI~ 341 (708)
++++.+|+.+++..+...++|. |+++| |+|+ +... +...+++.+. +..+. ..+|+++ +||++ |.|++
T Consensus 93 ~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~---l~~~~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 93 PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVI---TSGTVLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHH---TTTSTTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHH---HHhcCCCceEEEecccccccCcCCCCHH
Confidence 8899999999999988889997 99999 9999 4211 1111222221 11111 2469999 99999 99999
Q ss_pred hHHHHHHHHHHHcccc-cc-cCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCccc
Q 005218 342 DLEVALLLQAEMMNLK-AR-VDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTD 417 (708)
Q Consensus 342 ~L~~~I~~~~~~~~~~-~~-~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~ 417 (708)
+|++.|....+..... .+ ...|+..++.+++..++.|++++++|.+|++++||.|++.+. ..+|++|+ ..+++++
T Consensus 169 ~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~-~~~~~v~ 247 (370)
T 2elf_A 169 ELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQ-SHDVDID 247 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEE-ETTEEES
T ss_pred HHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEE-ECCCCcc
Confidence 9999998876543211 11 344566679999999999999999999999999999999874 56899997 4578999
Q ss_pred ccCCCCcEEEe--cc--CCCCCCCCeEEE
Q 005218 418 KARPAMPVEIE--GL--KGLPMAGDDIIV 442 (708)
Q Consensus 418 ~a~~g~~V~i~--gl--~~~~~~Gd~~~~ 442 (708)
+|.||+.|.+. |+ +++ ..||++..
T Consensus 248 ~a~aGd~v~i~l~gv~~~~i-~~Gdvl~~ 275 (370)
T 2elf_A 248 SAPAGTRVGMRLKNVQAKDI-ERGFIISD 275 (370)
T ss_dssp EEETTCEEEEEEESCCGGGC-CTTCEEES
T ss_pred EEcCCCcceEEEeccCHHHc-CCceEEEC
Confidence 99999999886 54 333 68998874
No 18
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.8e-29 Score=290.93 Aligned_cols=251 Identities=22% Similarity=0.191 Sum_probs=171.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccc-------------------------------ccccCceEEeeeEEEEEecC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-------------------------------AKEAGGITQHMGAFVVGMST 235 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~-------------------------------~~~~~gtT~di~~~~v~~~~ 235 (708)
...++|+++||+|||||||+|+|++.... ....+|+|++.....+.+ .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 34578999999999999999999643211 122568999998888877 7
Q ss_pred CeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCC-------ChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcc
Q 005218 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-------MPQTLEAIAHANAANVP-IVVAINKCDKPAADPE 307 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~-------~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~ 307 (708)
+..++|||||||++|...+..+++.+|++|||+|++++. .+|+.+++..+...++| +|+|+||+|+.+++.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 899999999999999999999999999999999999854 88999999999889997 9999999999765443
Q ss_pred hhhhhhhhcccch-hccC---CcceEEEEeeecCCCch--------------hHHHHHHHHHHHcccccccCCCcceeEE
Q 005218 308 RVKNQLGAEGLEL-EDWG---GKVQVVEVSAVKKTGLD--------------DLEVALLLQAEMMNLKARVDGPAQAYVV 369 (708)
Q Consensus 308 ~~~~~l~~~~~~~-~~~~---~~~~vi~vSAktg~GI~--------------~L~~~I~~~~~~~~~~~~~~~p~~~~V~ 369 (708)
.......+....+ ...+ ..++++++||++|.|+. .|++.|... ..+....+.|+..+|.
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~---~pp~~~~~~p~r~~v~ 410 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL---VPPEKPYRKPLRLSID 410 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS---CCCSCTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh---ccccccccccchheee
Confidence 3222111111111 1111 24689999999999998 688777653 2344456789999999
Q ss_pred EEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCccc-ccCCCCcEEEe--ccCCC-CCCCCeEEEe
Q 005218 370 EARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTD-KARPAMPVEIE--GLKGL-PMAGDDIIVV 443 (708)
Q Consensus 370 e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~-~a~~g~~V~i~--gl~~~-~~~Gd~~~~v 443 (708)
+++.. +.|++++|+|.+|+|++||.|.+.+. ..+|++|.. +++.+. +|.||+.|.+. |+... -..|+++...
T Consensus 411 ~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~-~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~ 488 (592)
T 3mca_A 411 DVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIR-NSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNY 488 (592)
T ss_dssp EEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEEC-SSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECS
T ss_pred EEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEE-cCccCcceecCCCEEEEEEccccccccceEEEeccC
Confidence 99999 99999999999999999999999764 468999994 677899 99999999864 55321 1578887754
No 19
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.7e-29 Score=287.59 Aligned_cols=257 Identities=22% Similarity=0.259 Sum_probs=195.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccc-------------------------------cCceEEeeeEEEEEecC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKE-------------------------------AGGITQHMGAFVVGMST 235 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~-------------------------------~~gtT~di~~~~v~~~~ 235 (708)
...++|+++|++|||||||+|+|++....+.. .+|+|.+.....+.. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-S
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-C
Confidence 45789999999999999999999876443221 369999988888887 8
Q ss_pred CeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC-------CChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcc
Q 005218 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-------VMPQTLEAIAHANAANVP-IVVAINKCDKPAADPE 307 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g-------~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~ 307 (708)
+..++|||||||++|...+..+++.+|++|+|+|+++| ..+|+.+++..+...++| +|+|+||+|+.+.+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 89999999999999999999999999999999999886 567999999888888877 9999999999764332
Q ss_pred hh---hhhhhhcccchhccCCcceEEEEeeecCCCchhHHH-----------HHHHHHHHc--c-----cccccCCCcce
Q 005218 308 RV---KNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEV-----------ALLLQAEMM--N-----LKARVDGPAQA 366 (708)
Q Consensus 308 ~~---~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~-----------~I~~~~~~~--~-----~~~~~~~p~~~ 366 (708)
.. ...+.............++++++||++|.|+++|.. .|...++.. . +....+.|+..
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~ 403 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 403 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEE
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhh
Confidence 22 222211110000001146899999999999987632 133333222 1 12235678999
Q ss_pred eEEEEEeeC---CCCcEEEEEEEeeEEcCCCEEEEcccc--ceEEEEeccc-------CCcccccCCCCcEEEe--cc--
Q 005218 367 YVVEARLDK---GRGPLTTAIVKAGTLVCGQHVVVGHEW--GRIRAIRDMV-------GKSTDKARPAMPVEIE--GL-- 430 (708)
Q Consensus 367 ~V~e~~~~~---~~G~v~~~~V~~G~L~~gd~v~~g~~~--~kVr~i~~~~-------~~~v~~a~~g~~V~i~--gl-- 430 (708)
.|.+++... +.|++++|+|.+|+|++||.|++++.. .+|++|+..+ +..+.+|.||+.|.+. +.
T Consensus 404 ~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~ 483 (611)
T 3izq_1 404 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 483 (611)
T ss_dssp ECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCT
T ss_pred heeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeeccH
Confidence 999998876 589999999999999999999998854 4699998764 5789999999999983 33
Q ss_pred CCCCCCCCeEEEeCC
Q 005218 431 KGLPMAGDDIIVVDS 445 (708)
Q Consensus 431 ~~~~~~Gd~~~~v~~ 445 (708)
.++ ..|+++....+
T Consensus 484 ~di-~rGdvl~~~~~ 497 (611)
T 3izq_1 484 EDI-QNGDLAASVDY 497 (611)
T ss_dssp TSC-CTTCEEBCSTT
T ss_pred hhC-cceEEccCCCC
Confidence 344 57888775433
No 20
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.96 E-value=1.3e-28 Score=274.30 Aligned_cols=256 Identities=22% Similarity=0.214 Sum_probs=190.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc---------------------------------cccCceEEeeeEEEEEec
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA---------------------------------KEAGGITQHMGAFVVGMS 234 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~---------------------------------~~~~gtT~di~~~~v~~~ 234 (708)
..++|+++||+|||||||+++|++..... ....|+|.+.....+..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~- 101 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST- 101 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-
Confidence 34789999999999999999997543111 01246777777666666
Q ss_pred CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcchhhhhh
Q 005218 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPERVKNQL 313 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~~~~~l 313 (708)
.+..++|||||||++|...+..++..+|++|+|+|++++..+|+.+++..+...++| +|+|+||+|+.+.+.+++....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999888877875 8999999999764433321111
Q ss_pred hhcccchhccC---CcceEEEEeeecCCCchhHHHH--------HHHHHHHcc-cccccCCCcceeEEEEEeeCCCCcEE
Q 005218 314 GAEGLELEDWG---GKVQVVEVSAVKKTGLDDLEVA--------LLLQAEMMN-LKARVDGPAQAYVVEARLDKGRGPLT 381 (708)
Q Consensus 314 ~~~~~~~~~~~---~~~~vi~vSAktg~GI~~L~~~--------I~~~~~~~~-~~~~~~~p~~~~V~e~~~~~~~G~v~ 381 (708)
.+....+..++ ...+++++||++|.|++++++. |.+.++... +....+.|+...|..++...+.|..+
T Consensus 182 ~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~~g~ 261 (434)
T 1zun_B 182 ADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNFRGF 261 (434)
T ss_dssp HHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSSSCCEE
T ss_pred HHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCCCceEE
Confidence 11111111222 3478999999999999984222 222222222 22334678888888887666667778
Q ss_pred EEEEEeeEEcCCCEEEEcc--ccceEEEEecccCCcccccCCCCcEEEeccCCCC-CCCCeEEEeCC
Q 005218 382 TAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLP-MAGDDIIVVDS 445 (708)
Q Consensus 382 ~~~V~~G~L~~gd~v~~g~--~~~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~-~~Gd~~~~v~~ 445 (708)
.|+|.+|+|++||.|.+++ ...+|++|... +..+++|.||+.|.+.+....+ ..||.+....+
T Consensus 262 ~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 262 AGTLASGIVHKGDEIVVLPSGKSSRVKSIVTF-EGELEQAGPGQAVTLTMEDEIDISRGDLLVHADN 327 (434)
T ss_dssp EEECCBSCEETTCEEEETTTCCEEEEEEEEET-TEEESEECTTCEEEEEESSCCCCCTTCEEEETTS
T ss_pred EEEEecceEeCCCEEEEecCCeEEEEEEEEEc-CcceeEecCCCEEEEEeCCccccCCccEEECCCC
Confidence 9999999999999999987 46789999954 5689999999999998765432 58999886544
No 21
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.96 E-value=1.2e-28 Score=281.53 Aligned_cols=341 Identities=18% Similarity=0.180 Sum_probs=240.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc----------------------cccccCceEEeeeEEEEEecCCeeEEEeeCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL----------------------VAKEAGGITQHMGAFVVGMSTGASITFLDTP 245 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~----------------------~~~~~~gtT~di~~~~v~~~~g~~v~liDTp 245 (708)
+-++|+|+||++||||||..+|+.... .....+|+|.......+.+ +++.++|+|||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 557999999999999999999963211 1233468888888888888 99999999999
Q ss_pred CcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcc-cc-----
Q 005218 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEG-LE----- 319 (708)
Q Consensus 246 G~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~-~~----- 319 (708)
||.+|.....+.++.+|.+|+|+|+..|+++||...|+++...++|.|+++||+|+..+++.+...++.+.. ..
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~ 188 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMT 188 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeEE
Confidence 999999999999999999999999999999999999999999999999999999999888766555443210 00
Q ss_pred ----------------------h-------------------------------------------------h--ccCCc
Q 005218 320 ----------------------L-------------------------------------------------E--DWGGK 326 (708)
Q Consensus 320 ----------------------~-------------------------------------------------~--~~~~~ 326 (708)
+ + ..+..
T Consensus 189 ~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~ 268 (548)
T 3vqt_A 189 WPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGEL 268 (548)
T ss_dssp EEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSE
T ss_pred eeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCc
Confidence 0 0 00224
Q ss_pred ceEEEEeeecCCCchhHHHHHHHHHHHccccc-------ccCCCcceeEEEEEee---CCCCcEEEEEEEeeEEcCCCEE
Q 005218 327 VQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-------RVDGPAQAYVVEARLD---KGRGPLTTAIVKAGTLVCGQHV 396 (708)
Q Consensus 327 ~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~-------~~~~p~~~~V~e~~~~---~~~G~v~~~~V~~G~L~~gd~v 396 (708)
+|+++.||+++.|++.|++.|...+..+.... +.+.|+.++|+++..+ ++.|.++.++|.+|+|++|+.|
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v 348 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRL 348 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEETTCEE
T ss_pred ceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEE
Confidence 68999999999999999999998754332211 2356889999998876 6789999999999999999999
Q ss_pred EEccccc-----eEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHHH
Q 005218 397 VVGHEWG-----RIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINEE 471 (708)
Q Consensus 397 ~~g~~~~-----kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 471 (708)
+...... ++..+.......++++.||+.|.|.|+++. .+||++....+.. .
T Consensus 349 ~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GDTl~~~~~~~------~----------------- 404 (548)
T 3vqt_A 349 KHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI-KIGDTFTESKEVL------K----------------- 404 (548)
T ss_dssp EETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCC-CTTCEEESSSSCC------C-----------------
T ss_pred EeeccccccccchhhhhccccccccCEEecCCEEEecCCccC-ccCCEecCCCCcc------c-----------------
Confidence 9866433 344444445568999999999999999986 7999987432210 0
Q ss_pred hhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCc
Q 005218 472 RTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPP 551 (708)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~ 551 (708)
..... . -.+.+.+-|.+...+..+.+.+.|.++..+.. +.+.... .++..||++-=.+.-
T Consensus 405 -~~~i~----~-~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~-------------et~e~il~g~GeLHL 464 (548)
T 3vqt_A 405 -FVGIP----N-FAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPL-------------VNNDYILGAVGVLQF 464 (548)
T ss_dssp -BCCCE----E-ECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEES-------------SSCCCEEEESSTHHH
T ss_pred -cCCCC----C-CCCcceeeeeeCCchhHHHHHHHHHHhhhcCc-eeEEEEC-------------CCCcEEEEEECHHHH
Confidence 00000 0 12445566777778888888888887754332 3333321 224455655333333
Q ss_pred h-hHHHHHHHcCCeEEE-------cchhhh
Q 005218 552 T-SVSQAATQAGIKILM-------HSIIYH 573 (708)
Q Consensus 552 ~-~~~~~a~~~~V~i~~-------~~iIY~ 573 (708)
+ ++.++.++.||.++. ..|+|+
T Consensus 465 eI~~erL~~ey~vev~~e~v~~~~P~V~Yr 494 (548)
T 3vqt_A 465 DVIVARLADEYGVDAVYEGVSTHTARWVYC 494 (548)
T ss_dssp HHHHHHHHHHHCCCEEEEECSCCEEEEEEC
T ss_pred HHHHHHHHHHhCCCEEEeeccccCceEEec
Confidence 3 345566667887653 456775
No 22
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.96 E-value=9.2e-28 Score=281.88 Aligned_cols=311 Identities=25% Similarity=0.279 Sum_probs=233.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc------------------cccCceEEeeeEEEEEecCC-------eeEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA------------------KEAGGITQHMGAFVVGMSTG-------ASITF 241 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~------------------~~~~gtT~di~~~~v~~~~g-------~~v~l 241 (708)
.+.++|+|+||+|||||||+++|+...... ....|+|.......+.+ .+ +.++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 456899999999999999999997532110 01357787776666666 44 89999
Q ss_pred eeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-----
Q 005218 242 LDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE----- 316 (708)
Q Consensus 242 iDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~----- 316 (708)
||||||.+|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..++.+++...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~ 166 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANP 166 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999988889999999999999876544443333211
Q ss_pred --------------------------------cc-----c---------------------------hhc----------
Q 005218 317 --------------------------------GL-----E---------------------------LED---------- 322 (708)
Q Consensus 317 --------------------------------~~-----~---------------------------~~~---------- 322 (708)
+. . ++.
T Consensus 167 ~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~ 246 (704)
T 2rdo_7 167 VPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEA 246 (704)
T ss_pred eeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHH
Confidence 00 0 000
Q ss_pred -----------cCCcceEEEEeeecCCCchhHHHHHHHHHHHccc------------------ccccCCCcceeEEEEEe
Q 005218 323 -----------WGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL------------------KARVDGPAQAYVVEARL 373 (708)
Q Consensus 323 -----------~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~------------------~~~~~~p~~~~V~e~~~ 373 (708)
.+..+|+++.||++|.|++.|++.|...+..+.. ..+++.|+.++|+++..
T Consensus 247 ~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~ 326 (704)
T 2rdo_7 247 EIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIAT 326 (704)
T ss_pred HHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEE
Confidence 0123689999999999999999999987543211 12357799999999999
Q ss_pred eCCCCcEEEEEEEeeEEcCCCEEEEcccc--ceEEEE---ecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHH
Q 005218 374 DKGRGPLTTAIVKAGTLVCGQHVVVGHEW--GRIRAI---RDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEER 448 (708)
Q Consensus 374 ~~~~G~v~~~~V~~G~L~~gd~v~~g~~~--~kVr~i---~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~ 448 (708)
+++.|.++.++|.+|+|++|+.|+..+.. .+|.++ .......++++.||+.|.|.|+++. .+||++....+..
T Consensus 327 d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~-~~GdTl~~~~~~~- 404 (704)
T 2rdo_7 327 DPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV-TTGDTLCDPDAPI- 404 (704)
T ss_pred cCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccC-ccCCEEeCCCccc-
Confidence 99999999999999999999999987532 244444 4445678999999999999999987 8999987432110
Q ss_pred HHHhhhhhhhHHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEE--------
Q 005218 449 ARMLSSGRKKKFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVV-------- 520 (708)
Q Consensus 449 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv-------- 520 (708)
.+ .... . ..+.+.+-|.+...+..+.+.+.|.++..++..+.+.
T Consensus 405 ---------------~l--------~~~~----~-~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~ 456 (704)
T 2rdo_7 405 ---------------IL--------ERME----F-PEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQT 456 (704)
T ss_pred ---------------cc--------CCCC----C-CCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcE
Confidence 00 0000 0 2366778888888888888888888887766555443
Q ss_pred -EecCCCCC
Q 005218 521 -HVGVGSVT 528 (708)
Q Consensus 521 -~~~VG~it 528 (708)
-++.|.+.
T Consensus 457 il~g~Gelh 465 (704)
T 2rdo_7 457 IIAGMGELH 465 (704)
T ss_pred EEEeCCHHH
Confidence 35566654
No 23
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.96 E-value=7.5e-29 Score=276.41 Aligned_cols=250 Identities=27% Similarity=0.372 Sum_probs=183.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc--cc-----------------------------ccccCceEEeeeEEEEEecCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS--LV-----------------------------AKEAGGITQHMGAFVVGMSTG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~--~~-----------------------------~~~~~gtT~di~~~~v~~~~g 236 (708)
+.++|+++||+|+|||||+++|++.. +. ....+|+|.+.....+.. .+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence 34789999999999999999998641 11 012478999988777776 78
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC-------CChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCC--c
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-------VMPQTLEAIAHANAANVP-IVVAINKCDKPAAD--P 306 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g-------~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~--~ 306 (708)
..++|||||||++|...+..+++.+|++|+|+|++++ +..|+.+++..+...++| +|+++||+|+.+.+ .
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 8999999999999999999999999999999999998 788999999888878874 99999999997632 2
Q ss_pred ch---hhhhhhhcccchhccC---CcceEEEEeeecCCCchhHHH--------HHHHHHHHc-ccccccCCCcceeEEEE
Q 005218 307 ER---VKNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDDLEV--------ALLLQAEMM-NLKARVDGPAQAYVVEA 371 (708)
Q Consensus 307 ~~---~~~~l~~~~~~~~~~~---~~~~vi~vSAktg~GI~~L~~--------~I~~~~~~~-~~~~~~~~p~~~~V~e~ 371 (708)
++ +.+++... +..++ ..++++++||++|.|+.++++ .|.+..+.. .+....+.|+..+|.++
T Consensus 164 ~~~~~~~~~i~~~---~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v 240 (435)
T 1jny_A 164 KRYKEIVDQVSKF---MRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDV 240 (435)
T ss_dssp HHHHHHHHHHHHH---HHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEE
T ss_pred HHHHHHHHHHHHH---HHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhccCCCCCCCCCCeEEEEEEE
Confidence 22 12222221 11111 146899999999999974432 222222222 22223467888899999
Q ss_pred EeeCCCCcEEEEEEEeeEEcCCCEEEEcc--ccceEEEEecccCCcccccCCCCcEEEe--cc--CCCCCCCCeEEEe
Q 005218 372 RLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEIE--GL--KGLPMAGDDIIVV 443 (708)
Q Consensus 372 ~~~~~~G~v~~~~V~~G~L~~gd~v~~g~--~~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl--~~~~~~Gd~~~~v 443 (708)
+..++.|.+++|+|.+|+|++||.|++++ ...+|++|+. +++.+++|.||++|.+. |+ +++ ..||++...
T Consensus 241 ~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~g~~~~~i-~~Gd~l~~~ 316 (435)
T 1jny_A 241 YSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIET-HHTKMDKAEPGDNIGFNVRGVEKKDI-KRGDVVGHP 316 (435)
T ss_dssp EEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEE-TTEEESEECTTCEEEEEEESSCGGGC-CTTCEEECT
T ss_pred EEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEE-CCcEEeEEcCCCEEEEEEecCCHHHc-CCccEecCC
Confidence 99999999999999999999999999976 4568999974 57899999999999874 44 344 689988743
No 24
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.96 E-value=4.1e-28 Score=268.28 Aligned_cols=236 Identities=23% Similarity=0.278 Sum_probs=173.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc---ccccccCceEEeeeEEEEEec--------------C--------CeeEEEe
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGMS--------------T--------GASITFL 242 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~---~~~~~~~gtT~di~~~~v~~~--------------~--------g~~v~li 242 (708)
..++|+++||+|||||||+++|++.. ......+|+|.++......+. . ...++||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45799999999999999999998543 233445788887654433220 0 1689999
Q ss_pred eCCCcchhhhhhhcccccccEEEEEEEccCCC-ChhHHHHHHHhhhcCC-CEEEEEeCCCCCCCCc-chhhhhhhhcccc
Q 005218 243 DTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEAIAHANAANV-PIVVAINKCDKPAADP-ERVKNQLGAEGLE 319 (708)
Q Consensus 243 DTpG~~~f~~~~~~~~~~aDivllVvDa~~g~-~~q~~~~l~~l~~~~~-piIvViNK~Dl~~~~~-~~~~~~l~~~~~~ 319 (708)
|||||++|...+.+++..+|++|+|+|++++. .+|+.+++..+...+. |+|+|+||+|+.+.+. ....+++.+...
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~- 165 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK- 165 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHT-
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHh-
Confidence 99999999999999999999999999999987 8999999887776665 7999999999975432 111122221110
Q ss_pred hhccCCcceEEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeC--------CCCcEEEEEEEeeEEc
Q 005218 320 LEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDK--------GRGPLTTAIVKAGTLV 391 (708)
Q Consensus 320 ~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~--------~~G~v~~~~V~~G~L~ 391 (708)
..+...++++++||++|.|+++|+++|...+. .+..+.+.|+..+|.+++... ++|.+++|++.+|+|+
T Consensus 166 -~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~--~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~ 242 (408)
T 1s0u_A 166 -GTIAENAPIIPISAHHEANIDVLLKAIQDFIP--TPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFK 242 (408)
T ss_dssp -TSTTTTCCEEEC------CHHHHHHHHHHHSC--CCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEE
T ss_pred -hcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC--CCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEe
Confidence 11123578999999999999999999987532 333445778999999988543 3788999999999999
Q ss_pred CCCEEEEccc--------------cceEEEEecccCCcccccCCCCcEEEe
Q 005218 392 CGQHVVVGHE--------------WGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 392 ~gd~v~~g~~--------------~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
+||.|.+++. ..+|++|+. +++.+++|.||+.|.+.
T Consensus 243 ~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~~a~~G~~v~~~ 292 (408)
T 1s0u_A 243 VGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA-GNTILRKAHPGGLIGVG 292 (408)
T ss_dssp TTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE-TTEEESEECSSSCEEEE
T ss_pred cCCEEEEcCCcccccccccccccceeEEEEEEE-CCEEcCEEeCCCeEEEE
Confidence 9999999753 468999985 57889999999999985
No 25
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.96 E-value=4.5e-29 Score=280.49 Aligned_cols=253 Identities=24% Similarity=0.306 Sum_probs=172.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-------------------------------ccccCceEEeeeEEEEEecCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-------------------------------AKEAGGITQHMGAFVVGMSTG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-------------------------------~~~~~gtT~di~~~~v~~~~g 236 (708)
+.++|+++||+|||||||+++|++.... .....|+|.++....+.+ ++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~ 120 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EH 120 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SS
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CC
Confidence 3478999999999999999999742210 012468899888777777 78
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCC-------hhHHHHHHHhhhcCCC-EEEEEeCCCCCCCC--c
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVM-------PQTLEAIAHANAANVP-IVVAINKCDKPAAD--P 306 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~-------~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~--~ 306 (708)
..++|||||||++|..++..+++.+|++|||+|++++.+ +|+.+++..+...++| +|+|+||+|+...+ .
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 999999999999999999999999999999999999863 6899999888888998 99999999996533 2
Q ss_pred chhh---hhhhhcccchhccC--CcceEEEEeeecCCCchhHHH----------HHHHHHHHcc-cccccCCCcceeEEE
Q 005218 307 ERVK---NQLGAEGLELEDWG--GKVQVVEVSAVKKTGLDDLEV----------ALLLQAEMMN-LKARVDGPAQAYVVE 370 (708)
Q Consensus 307 ~~~~---~~l~~~~~~~~~~~--~~~~vi~vSAktg~GI~~L~~----------~I~~~~~~~~-~~~~~~~p~~~~V~e 370 (708)
+++. .++.........+. ..++++++||++|.|++++++ .|...++... +..+.+.|+..+|.+
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~ 280 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIAS 280 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEE
Confidence 2211 11211110000111 146899999999999987552 1233333332 223357789989988
Q ss_pred EEeeCCCCcEEEEEEEeeEEcCCCEEEEcc--ccceEEEEecccCCcccccCCCCcEEE--ec-cCCCCCCCCeEEEeC
Q 005218 371 ARLDKGRGPLTTAIVKAGTLVCGQHVVVGH--EWGRIRAIRDMVGKSTDKARPAMPVEI--EG-LKGLPMAGDDIIVVD 444 (708)
Q Consensus 371 ~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~--~~~kVr~i~~~~~~~v~~a~~g~~V~i--~g-l~~~~~~Gd~~~~v~ 444 (708)
++. +.|++++|+|.+|+|++||.|.+++ ...+|++|+...++.+++|.||+.|.+ .| ..++ ..|+.+....
T Consensus 281 ~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g~~~~i-~rG~vl~~~~ 356 (467)
T 1r5b_A 281 KYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDV-QTGYVLTSTK 356 (467)
T ss_dssp EEE--SSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEESCCTTC-CTTCEEECSS
T ss_pred EEe--CCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEeccHhhC-CceEEEeCCC
Confidence 875 4789999999999999999999976 456899999755889999999999988 46 3333 6899887543
No 26
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.96 E-value=1.3e-28 Score=275.99 Aligned_cols=251 Identities=21% Similarity=0.269 Sum_probs=192.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc--cc-----------------------------ccccCceEEeeeEEEEEecCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS--LV-----------------------------AKEAGGITQHMGAFVVGMSTG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~--~~-----------------------------~~~~~gtT~di~~~~v~~~~g 236 (708)
..++|+++||+|||||||+|+|++.. +. .....|+|.+.....+.. .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 34789999999999999999998641 10 012378999988887777 78
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCCh-------hHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcch
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMP-------QTLEAIAHANAANVP-IVVAINKCDKPAADPER 308 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~-------q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~ 308 (708)
..++|||||||++|...+..++..+|++|||+|++++..+ |+.+++..+...++| +|+|+||+|+.+.+.++
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~ 164 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESR 164 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHH
Confidence 8999999999999999999999999999999999987655 898988888888887 99999999997543332
Q ss_pred h---hhhhhhcccchhccC---CcceEEEEeeecCCCchhHHH--------------------HHHHHHHHc-ccccccC
Q 005218 309 V---KNQLGAEGLELEDWG---GKVQVVEVSAVKKTGLDDLEV--------------------ALLLQAEMM-NLKARVD 361 (708)
Q Consensus 309 ~---~~~l~~~~~~~~~~~---~~~~vi~vSAktg~GI~~L~~--------------------~I~~~~~~~-~~~~~~~ 361 (708)
+ ..++... +..++ ..++++++||++|.|+.++.+ .|.+.++.. .+....+
T Consensus 165 ~~~i~~~~~~~---l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~~ 241 (458)
T 1f60_A 165 FQEIVKETSNF---IKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTD 241 (458)
T ss_dssp HHHHHHHHHHH---HHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCTT
T ss_pred HHHHHHHHHHH---HHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhccCCCcccCC
Confidence 2 2222211 11111 136899999999999974421 132323222 2333457
Q ss_pred CCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEEe--ccC--CCCC
Q 005218 362 GPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEIE--GLK--GLPM 435 (708)
Q Consensus 362 ~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~--~~~~ 435 (708)
.|+..+|.+++..++.|++++|+|.+|++++||.|.+.|. ..+|++|+. +++.+.+|.||+.|.|. |++ ++ .
T Consensus 242 ~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~~~~~~~a~aG~~v~i~l~gi~~~~i-~ 319 (458)
T 1f60_A 242 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEM-HHEQLEQGVPGDNVGFNVKNVSVKEI-R 319 (458)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEE-TTEECSCBCTTCEEEEEESSCCTTTS-C
T ss_pred CCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEE-CCeEEEEEcCCCEEEEEEcCCccccc-C
Confidence 7999999999999999999999999999999999999874 568999984 56789999999998875 553 33 5
Q ss_pred CCCeEEEeC
Q 005218 436 AGDDIIVVD 444 (708)
Q Consensus 436 ~Gd~~~~v~ 444 (708)
.|+.+....
T Consensus 320 rG~vl~~~~ 328 (458)
T 1f60_A 320 RGNVCGDAK 328 (458)
T ss_dssp TTCEEEETT
T ss_pred ceeEEecCC
Confidence 788877543
No 27
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.95 E-value=5.8e-28 Score=283.24 Aligned_cols=313 Identities=22% Similarity=0.227 Sum_probs=206.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc------------------cccCceEEeeeEEEEEecCCeeEEEeeCCCcc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA------------------KEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~------------------~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~ 248 (708)
.+.++|+|+||+|||||||+++|+...... ....++|.......+.+ .++.++|||||||.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHV 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSST
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCcc
Confidence 345799999999999999999998422110 11457787777777777 78999999999999
Q ss_pred hhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhccc----------
Q 005218 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGL---------- 318 (708)
Q Consensus 249 ~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~---------- 318 (708)
+|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+..+++.+..-
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi 168 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPI 168 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEE
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceeccc
Confidence 9999999999999999999999999999999999998889999999999999987654443333221100
Q ss_pred ------------------ch--h---------------------------------------------------------
Q 005218 319 ------------------EL--E--------------------------------------------------------- 321 (708)
Q Consensus 319 ------------------~~--~--------------------------------------------------------- 321 (708)
.+ .
T Consensus 169 ~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~ 248 (691)
T 1dar_A 169 GREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRK 248 (691)
T ss_dssp SCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 00 0
Q ss_pred --ccCCcceEEEEeeecCCCchhHHHHHHHHHHHccc----------------ccccCCCcceeEEEEEeeCCCCcEEEE
Q 005218 322 --DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNL----------------KARVDGPAQAYVVEARLDKGRGPLTTA 383 (708)
Q Consensus 322 --~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~----------------~~~~~~p~~~~V~e~~~~~~~G~v~~~ 383 (708)
..+..+|+++.||++|.|++.|++.|...+..+.. ..+++.|+.++|+++..+++.|.++.+
T Consensus 249 ~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~ 328 (691)
T 1dar_A 249 GTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFI 328 (691)
T ss_dssp HHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEE
T ss_pred HHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEE
Confidence 00112689999999999999999999987543321 113578999999999999999999999
Q ss_pred EEEeeEEcCCCEEEEcccc-----ceEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhh
Q 005218 384 IVKAGTLVCGQHVVVGHEW-----GRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKK 458 (708)
Q Consensus 384 ~V~~G~L~~gd~v~~g~~~-----~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~ 458 (708)
+|.+|+|+.||.|+..+.. +++..+.......++++.||+.|.|.|+++. .+||++....+.. + ...
T Consensus 329 RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdtl~~~~~~~----~-~l~-- 400 (691)
T 1dar_A 329 RVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKET-ITGDTLVGEDAPR----V-ILE-- 400 (691)
T ss_dssp EEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSC-CTTCEEEETTCCC----C-BCC--
T ss_pred EEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccC-ccCCEEecCCCcc----c-ccC--
Confidence 9999999999999986532 3455555455678999999999999999987 6899998543210 0 000
Q ss_pred HHHHHHHHHhHHHhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEE---------EEEecCCCCCH
Q 005218 459 KFEKDRVRKINEERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVN---------VVHVGVGSVTQ 529 (708)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~---------Iv~~~VG~it~ 529 (708)
... . ..+.+.+-|.+...+..+.+.+.|.++..++..+. .+-++.|.+.-
T Consensus 401 ----------------~~~----~-~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhl 459 (691)
T 1dar_A 401 ----------------SIE----V-PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHL 459 (691)
T ss_dssp -----------------------------------------------------CCCCSCEEEC-----CEEEEESCCC--
T ss_pred ----------------CCC----C-CCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHH
Confidence 000 0 12556677777777788888888888776553332 34456666653
No 28
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.95 E-value=7e-28 Score=266.58 Aligned_cols=236 Identities=23% Similarity=0.269 Sum_probs=181.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc---ccccccCceEEeeeEEEEEecC----------------------CeeEEEe
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS---LVAKEAGGITQHMGAFVVGMST----------------------GASITFL 242 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~---~~~~~~~gtT~di~~~~v~~~~----------------------g~~v~li 242 (708)
..++|+++||+|||||||+++|++.. ......+|+|.+.......+.. ...++||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34789999999999999999998543 3334567888876654433210 1689999
Q ss_pred eCCCcchhhhhhhcccccccEEEEEEEccCCC-ChhHHHHHHHhhhcCC-CEEEEEeCCCCCCCCc-chhhhhhhhcccc
Q 005218 243 DTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEAIAHANAANV-PIVVAINKCDKPAADP-ERVKNQLGAEGLE 319 (708)
Q Consensus 243 DTpG~~~f~~~~~~~~~~aDivllVvDa~~g~-~~q~~~~l~~l~~~~~-piIvViNK~Dl~~~~~-~~~~~~l~~~~~~ 319 (708)
|||||++|...+.+++..+|++|||+|++++. .+|+.+++..+...+. |+|+|+||+|+.+.+. ....+++.+..
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l-- 166 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFI-- 166 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH--
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999987 8999999888776665 6999999999975321 01112221110
Q ss_pred hhccCCcceEEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEee--------CCCCcEEEEEEEeeEEc
Q 005218 320 LEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLD--------KGRGPLTTAIVKAGTLV 391 (708)
Q Consensus 320 ~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~--------~~~G~v~~~~V~~G~L~ 391 (708)
...+...++++++||++|.|+++|+++|...+. .+..+.+.|+..+|.+++.. +++|.+++|+|.+|+|+
T Consensus 167 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~--~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~ 244 (410)
T 1kk1_A 167 EGTVAENAPIIPISALHGANIDVLVKAIEDFIP--TPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLK 244 (410)
T ss_dssp TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC--CCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEE
T ss_pred HhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC--CCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEe
Confidence 011123579999999999999999999987532 23334567888889988754 34788999999999999
Q ss_pred CCCEEEEccc--------------cceEEEEecccCCcccccCCCCcEEEe
Q 005218 392 CGQHVVVGHE--------------WGRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 392 ~gd~v~~g~~--------------~~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
+||.|.+++. .++|++|+. +++.+++|.||+.|.+.
T Consensus 245 ~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~-~~~~v~~a~aG~~v~~~ 294 (410)
T 1kk1_A 245 VGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA-GGQFVEEAYPGGLVGVG 294 (410)
T ss_dssp TTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE-TTEEESEECSSSCEEEE
T ss_pred eCCEEEECCCCccccccccccccceeEEEEEEE-CCeEecEEcCCCEEEEE
Confidence 9999998763 468999984 57899999999999885
No 29
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=99.95 E-value=1.5e-30 Score=239.52 Aligned_cols=99 Identities=35% Similarity=0.638 Sum_probs=94.1
Q ss_pred CCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCCchhHHHHHHHcC
Q 005218 483 PKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSPPTSVSQAATQAG 562 (708)
Q Consensus 483 ~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~~~~~~~~a~~~~ 562 (708)
.+.+.+|+|||||++||+|||+++|.++++++|+++|+++|||+||++||.+|++++|+||||||++++++ +++|++.|
T Consensus 37 ~~~k~l~vIiKaDv~GSlEAl~~~L~~l~~~ev~i~Ii~~gVG~ItesDV~lA~as~aiIigFNV~~~~~a-~~~A~~~g 115 (135)
T 1z9b_A 37 GEMKELNLIVKADVQGSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVIGFNVRPDANA-KRAAESEK 115 (135)
T ss_dssp CSSCEEEEEEEESSHHHHHHHHHHHTTCCCSSCEEEEEEEEESCBCHHHHHHHHHHTCEEEESSCCBCTTH-HHHHHTTT
T ss_pred cCcccCCEEEEeCCcchHHHHHHHHHhcCCCceEEEEEeecCCCCCHHHHHHHHHcCCEEEEeeCCCCHHH-HHHHHHcC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CeEEEcchhhhhHHHHHHHH
Q 005218 563 IKILMHSIIYHLLDDFGNLV 582 (708)
Q Consensus 563 V~i~~~~iIY~L~d~~~~~~ 582 (708)
|+|++|+|||+|+||++++|
T Consensus 116 V~I~~~~IIY~liddv~~~m 135 (135)
T 1z9b_A 116 VDIRLHRIIYNVIEEIEAAM 135 (135)
T ss_dssp CCCEECTTCCCCSCCCSCC-
T ss_pred CeEEEeChHHHHHHHHHHhC
Confidence 99999999999999987654
No 30
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.95 E-value=1.2e-27 Score=285.95 Aligned_cols=249 Identities=29% Similarity=0.343 Sum_probs=187.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc----------------cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL----------------VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS 251 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~----------------~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~ 251 (708)
..++|+++||+|+|||||+++|++... ......|+|.+.....+.. .+..++|||||||++|.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHHHH
Confidence 457899999999999999999986310 1123568888887666665 78999999999999999
Q ss_pred hhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcch---hhhhhhhcccchhccCCcc
Q 005218 252 AMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPER---VKNQLGAEGLELEDWGGKV 327 (708)
Q Consensus 252 ~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~~---~~~~l~~~~~~~~~~~~~~ 327 (708)
..+..+++.+|++|+|+|++++.++|+.+++..+...++| +|+|+||+|+.+ +.+. +..++........-....+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d~e~le~i~eEi~elLk~~G~~~~~v 452 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD-DEELLELVEMEVRELLSQYDFPGDDT 452 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-CHHHHHHHHHHHHHHHHHTTSCTTTC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-chhhHHHHHHHHHHHHHhccccccce
Confidence 9999999999999999999999999999999888888999 899999999974 2221 1112211110000001247
Q ss_pred eEEEEeeecC--------CCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEc
Q 005218 328 QVVEVSAVKK--------TGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVG 399 (708)
Q Consensus 328 ~vi~vSAktg--------~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g 399 (708)
|++++||++| .|+++|++.|..... .+..+.+.|+..+|.+++..++.|++++|+|.+|+|++||.|.+.
T Consensus 453 p~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip--~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ 530 (1289)
T 3avx_A 453 PIVRGSALKALEGDAEWEAKILELAGFLDSYIP--EPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIV 530 (1289)
T ss_dssp CEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC--CCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred eEEEEEeccCCCCCccccccchhhHhHHhhhcC--CCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEe
Confidence 9999999999 467888888776432 223345678999999999999999999999999999999999987
Q ss_pred ccc----ceEEEEecccCCcccccCCCCcEEEe--ccC--CCCCCCCeEEE
Q 005218 400 HEW----GRIRAIRDMVGKSTDKARPAMPVEIE--GLK--GLPMAGDDIIV 442 (708)
Q Consensus 400 ~~~----~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~--~~~~~Gd~~~~ 442 (708)
+.. .+|++|. ..++++++|.||+.|.+. |++ ++ ..|+++..
T Consensus 531 ps~~~~~~kVksI~-~~~~~v~eA~AGd~Vgl~L~GI~~~dI-~RGdVL~~ 579 (1289)
T 3avx_A 531 GIKETQKSTCTGVE-MFRKLLDEGRAGENVGVLLRGIKREEI-ERGQVLAK 579 (1289)
T ss_dssp SSSSCEEEEEEEEE-CSSCEESEEETTCEEEEEESSCCGGGC-CTTCEEES
T ss_pred cCCCceeEEEEEEe-ecCceeeEEecCCcceeEeeecchhcC-CcccEEec
Confidence 754 5899997 457889999999998775 553 33 57888763
No 31
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.95 E-value=6e-27 Score=266.45 Aligned_cols=340 Identities=18% Similarity=0.187 Sum_probs=231.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc----------------------cccCceEEeeeEEEEEecCCeeEEEeeCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA----------------------KEAGGITQHMGAFVVGMSTGASITFLDTP 245 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~----------------------~~~~gtT~di~~~~v~~~~g~~v~liDTp 245 (708)
+.++|+|+||+|||||||+++|+...... ....|+|.+.....+.+ +++.++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence 45799999999999999999998632111 12346666666666666 88999999999
Q ss_pred CcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc---------
Q 005218 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE--------- 316 (708)
Q Consensus 246 G~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~--------- 316 (708)
||.+|...+.++++.+|++|+|+|++++...++..++..+...++|+++++||+|+...+..+...++.+.
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~ 170 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPIT 170 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999988889999999999999765543222222110
Q ss_pred ---------------------------cc------c--------h---------h---------------------ccCC
Q 005218 317 ---------------------------GL------E--------L---------E---------------------DWGG 325 (708)
Q Consensus 317 ---------------------------~~------~--------~---------~---------------------~~~~ 325 (708)
+. . + + ..+.
T Consensus 171 ~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 250 (529)
T 2h5e_A 171 WPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGE 250 (529)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTS
T ss_pred cceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhCc
Confidence 00 0 0 0 0012
Q ss_pred cceEEEEeeecCCCchhHHHHHHHHHHHccccc-------ccCCCcceeEEEEEe---eCCCCcEEEEEEEeeEEcCCCE
Q 005218 326 KVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKA-------RVDGPAQAYVVEARL---DKGRGPLTTAIVKAGTLVCGQH 395 (708)
Q Consensus 326 ~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~-------~~~~p~~~~V~e~~~---~~~~G~v~~~~V~~G~L~~gd~ 395 (708)
.+|+++.||++|.|++.|++.|...+..+.... +.+.|+.++|+++.. .+++|.++.++|.+|+|++|+.
T Consensus 251 ~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~ 330 (529)
T 2h5e_A 251 ITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMK 330 (529)
T ss_dssp EEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCE
T ss_pred eeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCE
Confidence 468999999999999999999998754332111 114688899999875 3568999999999999999999
Q ss_pred EEEcccc--ceEEEEecc---cCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHHHHHhhhhhhhHHHHHHHHHhHH
Q 005218 396 VVVGHEW--GRIRAIRDM---VGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEERARMLSSGRKKKFEKDRVRKINE 470 (708)
Q Consensus 396 v~~g~~~--~kVr~i~~~---~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~~ 470 (708)
|...+.. .+|.++... ..+.+++|.||+.|.|.|+..+ .+||++..... + .+
T Consensus 331 v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~-~~Gdtl~~~~~------~-~~--------------- 387 (529)
T 2h5e_A 331 LRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTI-QIGDTFTQGEM------M-KF--------------- 387 (529)
T ss_dssp EEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCC-CTTCEEESSCC------C-CB---------------
T ss_pred EEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCC-ccCCEeecCCc------c-cc---------------
Confidence 9997643 356666543 4568899999999999999886 68999873221 0 00
Q ss_pred HhhhccCCCCCCCCCccccEEEEecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHhhHHhHHhcCCEEEEeCCCCC
Q 005218 471 ERTENLEPSEDVPKRAEMPVIVKADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQSDVDLAQACGACIVGFNVKSP 550 (708)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~iiKad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~sDv~~A~~~~a~Il~Fnv~~~ 550 (708)
.... . -.+.+.+-|.+...+..+.+.+.|.++..++. +.+.... .++..|+++==.+.
T Consensus 388 ---~~~~----~-~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~-------------~t~~~il~~~Gelh 445 (529)
T 2h5e_A 388 ---TGIP----N-FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPI-------------SNNDLIVGAVGVLQ 445 (529)
T ss_dssp ---CCCE----E-ECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEET-------------TSCCEEEEESSTHH
T ss_pred ---CCCC----C-CCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeC-------------CCCcEEEEEECHHH
Confidence 0000 0 12456677777777778888888877765442 4443322 22456666543333
Q ss_pred ch-hHHHHHHHcCCeEEEcchhhh
Q 005218 551 PT-SVSQAATQAGIKILMHSIIYH 573 (708)
Q Consensus 551 ~~-~~~~~a~~~~V~i~~~~iIY~ 573 (708)
-+ ++.++.++.||.+.....-|.
T Consensus 446 lev~~~rl~~ey~v~v~~~~~~v~ 469 (529)
T 2h5e_A 446 FDVVVARLKSEYNVEAVYESVNVA 469 (529)
T ss_dssp HHHHHHHHHHHSSCCEEEECCCCS
T ss_pred HHHHHHHHHHHhCcEEEEecCcee
Confidence 23 234455556777766654443
No 32
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.95 E-value=4.9e-27 Score=259.25 Aligned_cols=237 Identities=24% Similarity=0.276 Sum_probs=175.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceE--------------EeeeEEEEEe----cCCeeEEEeeCCCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGIT--------------QHMGAFVVGM----STGASITFLDTPGH 247 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT--------------~di~~~~v~~----~~g~~v~liDTpG~ 247 (708)
...++|+++|++|||||||+|+|++..... ......| .+........ .....+.|||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 456899999999999999999998753321 0111111 1100000000 01268999999999
Q ss_pred chhhhhhhcccccccEEEEEEEccCCC-ChhHHHHHHHhhhcCC-CEEEEEeCCCCCCCCc-chhhhhhhhcccchhccC
Q 005218 248 AAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEAIAHANAANV-PIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWG 324 (708)
Q Consensus 248 ~~f~~~~~~~~~~aDivllVvDa~~g~-~~q~~~~l~~l~~~~~-piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~ 324 (708)
++|...+..++..+|++|+|+|++++. .+|+.+++..+...+. |+|+|+||+|+.+.+. ....+++.+.. .....
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l--~~~~~ 163 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFT--KGTWA 163 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH--TTSTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHH--HhhCC
Confidence 999999999999999999999999987 8999999888876665 8999999999974321 11111221110 01122
Q ss_pred CcceEEEEeeecCCCchhHHHHHHHHHHHcccccccCCCcceeEEEEEeeCC--------CCcEEEEEEEeeEEcCCCEE
Q 005218 325 GKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKARVDGPAQAYVVEARLDKG--------RGPLTTAIVKAGTLVCGQHV 396 (708)
Q Consensus 325 ~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~~~~p~~~~V~e~~~~~~--------~G~v~~~~V~~G~L~~gd~v 396 (708)
..++++++||++|.|+++|+++|.... ..+..+.+.|+..+|.+++...+ +|.+++|++.+|++++||.|
T Consensus 164 ~~~~ii~vSA~~g~gi~~L~~~l~~~l--~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v 241 (403)
T 3sjy_A 164 ENVPIIPVSALHKINIDSLIEGIEEYI--KTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEI 241 (403)
T ss_dssp TTCCEEECBTTTTBSHHHHHHHHHHHS--CCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEE
T ss_pred CCCEEEEEECCCCcChHHHHHHHHHhC--CCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEE
Confidence 357899999999999999999998754 33344557789999999876444 89999999999999999999
Q ss_pred EEcccc--------------ceEEEEecccCCcccccCCCCcEEEe
Q 005218 397 VVGHEW--------------GRIRAIRDMVGKSTDKARPAMPVEIE 428 (708)
Q Consensus 397 ~~g~~~--------------~kVr~i~~~~~~~v~~a~~g~~V~i~ 428 (708)
.++|.. .+|++|+. +++++++|.||+.|.+.
T Consensus 242 ~~~p~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~~a~~G~~v~~~ 286 (403)
T 3sjy_A 242 KVLPGLRVEKQGKVSYEPIFTKISSIRF-GDEEFKEAKPGGLVAIG 286 (403)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEEE-TTEEESEECSSSCEEEE
T ss_pred EEeCCcccccccccccccccEEEEEEEE-CCEEcCEEeCCCEEEEE
Confidence 997643 58999984 67899999999999983
No 33
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.94 E-value=1.2e-26 Score=271.16 Aligned_cols=254 Identities=22% Similarity=0.210 Sum_probs=199.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccc------------------cCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKE------------------AGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~------------------~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
..++.+|+|+||+|+|||||+++|++....... ..++|.......+.+ .+..++|||||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~ 84 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGY 84 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCS
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCc
Confidence 356789999999999999999999843322100 235666555556665 7899999999999
Q ss_pred chhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccc--------
Q 005218 248 AAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLE-------- 319 (708)
Q Consensus 248 ~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~-------- 319 (708)
.+|...+.++++.+|++++|+|++++...++...+..+...++|+|+++||+|+. ....+..+++....-.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~Pi 163 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDLPL 163 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEEEE
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcceEEeee
Confidence 9999999999999999999999999999999999999988899999999999997 5544443333221000
Q ss_pred --------------------------------------------------------hhc---------------------
Q 005218 320 --------------------------------------------------------LED--------------------- 322 (708)
Q Consensus 320 --------------------------------------------------------~~~--------------------- 322 (708)
++.
T Consensus 164 ~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~ 243 (665)
T 2dy1_A 164 YEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVR 243 (665)
T ss_dssp EETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred cCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 000
Q ss_pred cCCcceEEEEeeecCCCchhHHHHHHHHHHHcccccc-cCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc
Q 005218 323 WGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLKAR-VDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE 401 (708)
Q Consensus 323 ~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~~~-~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~ 401 (708)
.+..+|++++||++|.|+++|+++|...+.. +... ++.|+.++|+++..+++.|.++.++|.+|+|++||.|+..+.
T Consensus 244 ~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~--p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~~ 321 (665)
T 2dy1_A 244 RGLLYPVALASGEREIGVLPLLELILEALPS--PTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAG 321 (665)
T ss_dssp TTSCEEEEECBTTTTBSHHHHHHHHHHHSCC--HHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTTS
T ss_pred hCCeeEEEEeecccCcCHHHHHHHHHHhCCC--ccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCCC
Confidence 0122689999999999999999999885421 1111 578999999999999999999999999999999999998764
Q ss_pred cceEEEEec---ccCCcccccCCCCcEEEeccCCCCCCCCeEEEeC
Q 005218 402 WGRIRAIRD---MVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVD 444 (708)
Q Consensus 402 ~~kVr~i~~---~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~ 444 (708)
..+|.++.. .....++++.||+.|.|.|++++ .+||++....
T Consensus 322 ~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~-~~Gdtl~~~~ 366 (665)
T 2dy1_A 322 QVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL-HRGMVLWQGE 366 (665)
T ss_dssp CEEESSEEEEETTEEEEESCEETTCEEEESSCTTC-CTTCEEESSS
T ss_pred eEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccC-ccCCEEecCC
Confidence 445555443 34568899999999999999987 6999998543
No 34
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=6.6e-26 Score=265.87 Aligned_cols=256 Identities=25% Similarity=0.233 Sum_probs=196.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc------------c------ccCceEEeeeEEEEEecCCeeEEEeeCCCcc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA------------K------EAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~------------~------~~~gtT~di~~~~v~~~~g~~v~liDTpG~~ 248 (708)
.+.++|+|+|++|||||||+|+|+...... . ..+++|.......+.+ +++.++|||||||.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence 355799999999999999999998421110 1 1357777777777777 78999999999999
Q ss_pred hhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhc-cc---------
Q 005218 249 AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAE-GL--------- 318 (708)
Q Consensus 249 ~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~-~~--------- 318 (708)
+|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+..+.+... +.
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ipi 166 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPI 166 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEEE
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEeec
Confidence 99999999999999999999999999999999999988889999999999999876543333332211 00
Q ss_pred ------------------chh-c---------------------------------------------------------
Q 005218 319 ------------------ELE-D--------------------------------------------------------- 322 (708)
Q Consensus 319 ------------------~~~-~--------------------------------------------------------- 322 (708)
.+. .
T Consensus 167 sa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~ 246 (693)
T 2xex_A 167 GAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQ 246 (693)
T ss_dssp CCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred ccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 000 0
Q ss_pred ---cCCcceEEEEeeecCCCchhHHHHHHHHHHHcccc------------------cccCCCcceeEEEEEeeCCCCcEE
Q 005218 323 ---WGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMNLK------------------ARVDGPAQAYVVEARLDKGRGPLT 381 (708)
Q Consensus 323 ---~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~~~------------------~~~~~p~~~~V~e~~~~~~~G~v~ 381 (708)
.+..+|+++.||++|.|++.|++.|...+..+... .+++.|+.++|+++..+++.|.++
T Consensus 247 ~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~ 326 (693)
T 2xex_A 247 ATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLT 326 (693)
T ss_dssp HHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEE
T ss_pred HHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCCceEE
Confidence 01126899999999999999999999876433211 125779999999999999999999
Q ss_pred EEEEEeeEEcCCCEEEEcccc--ceEEEEecc---cCCcccccCCCCcEEEeccCCCCCCCCeEEEeC
Q 005218 382 TAIVKAGTLVCGQHVVVGHEW--GRIRAIRDM---VGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVD 444 (708)
Q Consensus 382 ~~~V~~G~L~~gd~v~~g~~~--~kVr~i~~~---~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~ 444 (708)
.++|.+|+|+.|+.|...... .+|..+... ....++++.||+.+.|.|+++. .+||++....
T Consensus 327 ~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~GdTl~~~~ 393 (693)
T 2xex_A 327 FFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT-GTGDTLCGEK 393 (693)
T ss_dssp EEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSC-CTTCEEEETT
T ss_pred EEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccC-ccCCEEecCC
Confidence 999999999999999986532 245444433 4468899999999999999986 7899998644
No 35
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.93 E-value=5.4e-26 Score=267.63 Aligned_cols=257 Identities=25% Similarity=0.280 Sum_probs=196.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc------------------ccccCceEEeeeEEEEEec------CCeeEEEee
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV------------------AKEAGGITQHMGAFVVGMS------TGASITFLD 243 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~------------------~~~~~gtT~di~~~~v~~~------~g~~v~liD 243 (708)
+-+||+|+||++||||||.++|+..... ....+|+|.......+.+. +++.++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4579999999999999999999642211 1234688887777777663 268999999
Q ss_pred CCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcc------
Q 005218 244 TPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEG------ 317 (708)
Q Consensus 244 TpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~------ 317 (708)
||||.+|.....++++.+|.+|+|+|+..|++.||...|+++...++|.|+++||+|+...+.....+++....
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~~~ 171 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVP 171 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCEEE
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999998776544443332100
Q ss_pred -------------------------------cc------------------------------------h----------
Q 005218 318 -------------------------------LE------------------------------------L---------- 320 (708)
Q Consensus 318 -------------------------------~~------------------------------------~---------- 320 (708)
.. +
T Consensus 172 ~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~ 251 (709)
T 4fn5_A 172 VQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEI 251 (709)
T ss_dssp SEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHH
T ss_pred eecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHH
Confidence 00 0
Q ss_pred -------hccCCcceEEEEeeecCCCchhHHHHHHHHHHHcc------------------cccccCCCcceeEEEEEeeC
Q 005218 321 -------EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEMMN------------------LKARVDGPAQAYVVEARLDK 375 (708)
Q Consensus 321 -------~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~~~------------------~~~~~~~p~~~~V~e~~~~~ 375 (708)
...+...|++..||+++.|+..|++.|...+..+. ...+++.|+.++|+++..++
T Consensus 252 ~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~ 331 (709)
T 4fn5_A 252 KEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDP 331 (709)
T ss_dssp HHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBT
T ss_pred HHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeeccc
Confidence 00012368999999999999999999998754321 12356789999999999999
Q ss_pred CCCcEEEEEEEeeEEcCCCEEEEcccc-----ceEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCC
Q 005218 376 GRGPLTTAIVKAGTLVCGQHVVVGHEW-----GRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDS 445 (708)
Q Consensus 376 ~~G~v~~~~V~~G~L~~gd~v~~g~~~-----~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~ 445 (708)
+.|.++.++|.+|+|++|+.|+..... +++..+.......++++.+|+.|.|.|++++ ..||++...++
T Consensus 332 ~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~-~~gdTl~~~~~ 405 (709)
T 4fn5_A 332 FVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDV-TTGDTLCSIEK 405 (709)
T ss_dssp TTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSC-CTTCEEECSSS
T ss_pred CCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcC-ccCCEecCCCc
Confidence 999999999999999999999875422 2334444445568899999999999999886 78999875543
No 36
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.92 E-value=2.9e-25 Score=214.36 Aligned_cols=172 Identities=62% Similarity=0.961 Sum_probs=143.2
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
..++.++|+++|++|+|||||+++|.+..+.....+++|.++....+.+ ++..+.||||||++.|..++..++..+|++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 4567899999999999999999999998888777788888877777777 788999999999999999998999999999
Q ss_pred EEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 265 VLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 265 llVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
++|+|++++...++.+.+..+...++|+++|+||+|+...+.++....+.........++..++++++||++|.|+++|+
T Consensus 83 i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 162 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLL 162 (178)
T ss_dssp EEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHH
Confidence 99999999888999999888888899999999999997654444444443333333334444789999999999999999
Q ss_pred HHHHHHHHHcccc
Q 005218 345 VALLLQAEMMNLK 357 (708)
Q Consensus 345 ~~I~~~~~~~~~~ 357 (708)
++|...+.....+
T Consensus 163 ~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 163 EMILLVSEMEELK 175 (178)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHhhhhhccc
Confidence 9999887665443
No 37
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.92 E-value=3.2e-27 Score=274.70 Aligned_cols=239 Identities=24% Similarity=0.254 Sum_probs=189.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc------------------cccCceEEeeeEEEEEecCCeeEEEeeCCCcch
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA------------------KEAGGITQHMGAFVVGMSTGASITFLDTPGHAA 249 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~------------------~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~ 249 (708)
+-+||+|+||++||||||+++|+.....+ ...+|+|.......+.+ +++.++|+|||||.+
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~D 79 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSS
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHH
Confidence 34689999999999999999996432211 12248888877777777 899999999999999
Q ss_pred hhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccc----------
Q 005218 250 FSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLE---------- 319 (708)
Q Consensus 250 f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~---------- 319 (708)
|.....++++.+|++|+|+|+.+|+++||..+|+++...++|.|+++||+|....+......++.+..-.
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~ 159 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVEL 159 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEe
Confidence 9999999999999999999999999999999999999999999999999999887765544443221000
Q ss_pred -------------------------hh---------------------ccCCcceEEEEeeecCCCchhHHHHHHHHHHH
Q 005218 320 -------------------------LE---------------------DWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 320 -------------------------~~---------------------~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~ 353 (708)
++ ......|+++.||+++.|++.|++.|....
T Consensus 160 ~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~-- 237 (638)
T 3j25_A 160 YPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF-- 237 (638)
T ss_dssp CGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC--
T ss_pred eccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc--
Confidence 00 001236899999999999999999998753
Q ss_pred cccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc-cceEEEEeccc---CCcccccCCCCcEEEec
Q 005218 354 MNLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE-WGRIRAIRDMV---GKSTDKARPAMPVEIEG 429 (708)
Q Consensus 354 ~~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~-~~kVr~i~~~~---~~~v~~a~~g~~V~i~g 429 (708)
+.+....+.|+.+.|+++..+++.|.++.++|.+|+|+.||.|.+... ..+|..+.... ...++++.+|+.|.|.|
T Consensus 238 p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g 317 (638)
T 3j25_A 238 YSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSINGELCKIDRAYSGEIVILQN 317 (638)
T ss_dssp CCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCCSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS
T ss_pred cCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcceeEEeeecccccccccccccccceEEEEec
Confidence 233334567899999999999999999999999999999999876542 23444444333 35788999999988876
No 38
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.87 E-value=2.8e-22 Score=239.68 Aligned_cols=253 Identities=23% Similarity=0.266 Sum_probs=172.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc----------------cccCceEEeeeEEEEEec---------------CC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA----------------KEAGGITQHMGAFVVGMS---------------TG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~----------------~~~~gtT~di~~~~v~~~---------------~g 236 (708)
+.++|+|+||+|||||||+++|+...... ...+|+|.......+.+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 34689999999999999999998643211 113455554444444331 26
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCC----CCcchhhhh
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA----ADPERVKNQ 312 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~----~~~~~~~~~ 312 (708)
+.++|||||||.+|...+.++++.+|++|+|+|++++...++...|..+...++|+|+|+||+|+.. .++++....
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~~~ 177 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQT 177 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHHHH
Confidence 8899999999999999999999999999999999999999999999888888999999999999862 222222111
Q ss_pred ----hhhcccchh--------c--cC-CcceEEEEeeecCCCc-------------------------------------
Q 005218 313 ----LGAEGLELE--------D--WG-GKVQVVEVSAVKKTGL------------------------------------- 340 (708)
Q Consensus 313 ----l~~~~~~~~--------~--~~-~~~~vi~vSAktg~GI------------------------------------- 340 (708)
+......+. . +. ...++...||++|+|+
T Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~ 257 (842)
T 1n0u_A 178 FARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKW 257 (842)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEE
T ss_pred HHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeE
Confidence 111100000 0 00 0124666777665321
Q ss_pred --------------------------------------------------------------------------hhHHHH
Q 005218 341 --------------------------------------------------------------------------DDLEVA 346 (708)
Q Consensus 341 --------------------------------------------------------------------------~~L~~~ 346 (708)
+.|++.
T Consensus 258 ~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd~ 337 (842)
T 1n0u_A 258 TNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEM 337 (842)
T ss_dssp ESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHHH
T ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHHH
Confidence 222222
Q ss_pred HHHHHHHcc-----------------------cccccCCCcceeEEEEEeeCCCCc-EEEEEEEeeEEcCCCEEEEc-cc
Q 005218 347 LLLQAEMMN-----------------------LKARVDGPAQAYVVEARLDKGRGP-LTTAIVKAGTLVCGQHVVVG-HE 401 (708)
Q Consensus 347 I~~~~~~~~-----------------------~~~~~~~p~~~~V~e~~~~~~~G~-v~~~~V~~G~L~~gd~v~~g-~~ 401 (708)
|...+..+. ...++++|+.++|+++..+++.|. ++.++|.+|+|+.|+.|.+. +.
T Consensus 338 i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~ 417 (842)
T 1n0u_A 338 IVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPN 417 (842)
T ss_dssp HHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTT
T ss_pred HHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecccc
Confidence 222211000 012456799999999999999995 99999999999999999653 21
Q ss_pred ----------cceEEEEec---ccCCcccccCCCCcEEEeccCCCCCCC-CeEE
Q 005218 402 ----------WGRIRAIRD---MVGKSTDKARPAMPVEIEGLKGLPMAG-DDII 441 (708)
Q Consensus 402 ----------~~kVr~i~~---~~~~~v~~a~~g~~V~i~gl~~~~~~G-d~~~ 441 (708)
..+|..|.. .....++++.||+.|.|.|+++. .+| +++.
T Consensus 418 ~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~-~~~t~Tl~ 470 (842)
T 1n0u_A 418 YVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQF-LLKTGTLT 470 (842)
T ss_dssp CCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTT-CCSSEEEE
T ss_pred ccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccc-eecceeec
Confidence 134545543 34468899999999999999875 344 4555
No 39
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=4.3e-21 Score=181.68 Aligned_cols=150 Identities=20% Similarity=0.277 Sum_probs=110.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcch-------hhhhhhcccccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA-------FSAMRKRGAAVT 261 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~-------f~~~~~~~~~~a 261 (708)
++|+++|++|+|||||+++|.+.... ....+++|.+.....+.. ++..+.||||||+.. +...+..+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 58999999999999999999988765 366778888887777777 788999999999887 344455678999
Q ss_pred cEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|++++|+|++++...........+...+.|+++|+||+|+.+. ......+. .+ +..+++++||++|.|++
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~-------~~-~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH--ELYLGPLY-------GL-GFGDPIPTSSEHARGLE 150 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG--GGGCGGGG-------GG-SSCSCEECBTTTTBSHH
T ss_pred CEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc--hHhHHHHH-------hC-CCCCeEEEecccCCChH
Confidence 9999999999987766666666666678999999999999643 11111111 11 11278999999999999
Q ss_pred hHHHHHHHH
Q 005218 342 DLEVALLLQ 350 (708)
Q Consensus 342 ~L~~~I~~~ 350 (708)
+++++|.+.
T Consensus 151 ~l~~~l~~~ 159 (161)
T 2dyk_A 151 ELLEAIWER 159 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 40
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=1.6e-21 Score=217.40 Aligned_cols=163 Identities=19% Similarity=0.312 Sum_probs=122.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCc----------chhhhhhh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGH----------AAFSAMRK 255 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~----------~~f~~~~~ 255 (708)
...++|+++|+||||||||+|+|++..+. .++.+|+|++.....+.+ ++..+.||||||+ +.|..++.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 35689999999999999999999998876 578899999988878877 8889999999998 44554444
Q ss_pred -cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcc---hhhhhhhhcccchhccCCcceEEE
Q 005218 256 -RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE---RVKNQLGAEGLELEDWGGKVQVVE 331 (708)
Q Consensus 256 -~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~---~~~~~l~~~~~~~~~~~~~~~vi~ 331 (708)
.+++.+|++++|+|++++...++..++..+...++|+|+|+||+|+.+.... +..+.+... + .+....|+++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~---l-~~~~~~~~~~ 327 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDH---F-QFLDYAPILF 327 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHH---C-GGGTTSCEEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHh---c-ccCCCCCEEE
Confidence 4778999999999999999999998888888889999999999999754321 122222211 1 1113468999
Q ss_pred EeeecCCCchhHHHHHHHHHHHc
Q 005218 332 VSAVKKTGLDDLEVALLLQAEMM 354 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~~~~~~~ 354 (708)
+||++|.|+++|++.+...+...
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998876543
No 41
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.85 E-value=8.7e-21 Score=181.38 Aligned_cols=161 Identities=24% Similarity=0.217 Sum_probs=115.9
Q ss_pred CCCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccE
Q 005218 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDI 263 (708)
Q Consensus 184 ~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDi 263 (708)
+..++.++|+++|++|+|||||+++|.+..+.. ..+++ ......+.+ ++..+.+|||||++.+..++..+++.+|+
T Consensus 2 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~--~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 77 (171)
T 1upt_A 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTI--GFNVETVTY-KNLKFQVWDLGGLTSIRPYWRCYYSNTDA 77 (171)
T ss_dssp -CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCS--SEEEEEEEE-TTEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred CCCCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcC--ccceEEEEE-CCEEEEEEECCCChhhhHHHHHHhccCCE
Confidence 345677899999999999999999998877642 22322 333344555 68999999999999999999999999999
Q ss_pred EEEEEEccCCCChhH-HHHHHHhhh----cCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecC
Q 005218 264 VVLVVAADDGVMPQT-LEAIAHANA----ANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 264 vllVvDa~~g~~~q~-~~~l~~l~~----~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg 337 (708)
+++|+|+++...... ...+..+.. .++|+++|+||+|+.+... ..+...+.... .. ...++++++||++|
T Consensus 78 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~~ 153 (171)
T 1upt_A 78 VIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA--LK--DRKWQIFKTSATKG 153 (171)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG--CT--TSCEEEEECCTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchh--cc--CCceEEEECcCCCC
Confidence 999999988643332 223333221 5789999999999965321 22222221111 11 12358999999999
Q ss_pred CCchhHHHHHHHHHH
Q 005218 338 TGLDDLEVALLLQAE 352 (708)
Q Consensus 338 ~GI~~L~~~I~~~~~ 352 (708)
.|+++++++|...+.
T Consensus 154 ~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 154 TGLDEAMEWLVETLK 168 (171)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999987653
No 42
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.85 E-value=1.1e-20 Score=185.74 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=114.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
...++|+++|++|||||||+++|.+..+.. ...+++.. ....+.. .+..+.||||||++.+..++..+++.+|++|
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFEK-GRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEEE-TTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEEe-CCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 456799999999999999999999988776 44444432 2333444 8899999999999999999999999999999
Q ss_pred EEEEccCCCChhHH-HHHHHhhhc-----------CCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEE
Q 005218 266 LVVAADDGVMPQTL-EAIAHANAA-----------NVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 266 lVvDa~~g~~~q~~-~~l~~l~~~-----------~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
+|+|+++....+.. ..+..+... ++|+|+|+||+|+..... +++...+. .........++++++
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 168 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILD---LTTLMGDHPFVIFAS 168 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHT---HHHHHTTSCEEEEEC
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhc---chhhccCCeeEEEEe
Confidence 99999985433222 333333322 899999999999975422 22222221 111001134689999
Q ss_pred eeecCCCchhHHHHHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~~~~~ 353 (708)
||++|.|+++++++|...+..
T Consensus 169 Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 169 NGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp BTTTTBTHHHHHHHHHHHHHH
T ss_pred eCCCccCHHHHHHHHHHHHHH
Confidence 999999999999999887643
No 43
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.84 E-value=7.2e-21 Score=186.55 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=121.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
..++|+++|++|+|||||+++|.+..+.....++++.+.....+.+ ++ ..+.||||||++.+..++..+++.+|+++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4579999999999999999999998888777788888877777776 44 67999999999999999999999999999
Q ss_pred EEEEccCCCC----hhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 266 LVVAADDGVM----PQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 266 lVvDa~~g~~----~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+|+++... .++...+......++|+++|+||+|+......... ..... ...+ .++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~---~~~~--~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT-TAKEF---ADSL--GIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHH-HHHHH---HHHT--TCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHH-HHHHH---HHHc--CCcEEEEeCCCCCCHH
Confidence 9999987432 22333333333457899999999999653221111 11110 0111 2589999999999999
Q ss_pred hHHHHHHHHHHHc
Q 005218 342 DLEVALLLQAEMM 354 (708)
Q Consensus 342 ~L~~~I~~~~~~~ 354 (708)
+++++|.+.+...
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876543
No 44
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.84 E-value=4.8e-21 Score=193.61 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=110.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|.+|||||||+++|+...+...+.+++..++....+..+ ..+.+.||||||++.|..++..+++.+|++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 44799999999999999999999999888778888878776666652 34678899999999999999999999999999
Q ss_pred EEEccCCCC----hhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 267 VVAADDGVM----PQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 267 VvDa~~g~~----~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+|.++... ..|...+......++|+|+|+||+|+.+...-. .++.... ...+ .++++++||++|.||++
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~-~~e~~~~---a~~~--~~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS-IEEGERK---AKEL--NVMFIETSAKAGYNVKQ 165 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSC-HHHHHHH---HHHH--TCEEEEEBTTTTBSHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCccc-HHHHhhH---HHHh--CCeeEEEeCCCCcCHHH
Confidence 999987432 233333333445678999999999995421100 0111110 0112 25799999999999999
Q ss_pred HHHHHHHHH
Q 005218 343 LEVALLLQA 351 (708)
Q Consensus 343 L~~~I~~~~ 351 (708)
+|+.|.+.+
T Consensus 166 ~F~~i~~~i 174 (216)
T 4dkx_A 166 LFRRVAAAL 174 (216)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998754
No 45
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.84 E-value=3.7e-21 Score=193.17 Aligned_cols=164 Identities=25% Similarity=0.339 Sum_probs=122.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc--cccccCceEEeeeEEEEEecCCeeEEEeeCCCc----------chhhhhh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH----------AAFSAMR 254 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~--~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~----------~~f~~~~ 254 (708)
.+.++|+++|++|+|||||+|+|++... ..+..+++|++.....+...++..+.||||||+ +.+..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 3568999999999999999999998873 446778888887766665336789999999995 3334444
Q ss_pred hccc---ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhcc-----CCc
Q 005218 255 KRGA---AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDW-----GGK 326 (708)
Q Consensus 255 ~~~~---~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~-----~~~ 326 (708)
..++ ..+|++++|+|++++........+..+...++|+++|+||+|+... ......+......+..+ ...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTR--QESINALRATQKSLDAYRDAGYAGK 184 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCH--HHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCCh--hhHHHHHHHHHHHHHhhhhcccCCC
Confidence 4444 4489999999999988888888888888889999999999999642 22111111111111111 245
Q ss_pred ceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 327 VQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 327 ~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
.+++++||++|.|+++|+++|.....
T Consensus 185 ~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 185 LTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp EEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred CeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 68999999999999999999988653
No 46
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.84 E-value=2.8e-21 Score=204.98 Aligned_cols=154 Identities=20% Similarity=0.200 Sum_probs=122.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcch--------hhhhhhccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAA--------FSAMRKRGA 258 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~--------f~~~~~~~~ 258 (708)
+..+|+|+|+||+|||||+|+|++..+.. +..+++|++.....+.. ++.++.||||||+.+ +......++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-CCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 34579999999999999999999998875 67788998866655555 789999999999765 455566788
Q ss_pred ccccEEEEEEEccCCCChhHHHHHHHhhhc--CCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeec
Q 005218 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAA--NVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 259 ~~aDivllVvDa~~g~~~q~~~~l~~l~~~--~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
+.+|++++|+|++++....+...+..+... ++|+++|+||+|+..... .+...+... ....+++++||++
T Consensus 85 ~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~-------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE-EAMKAYHEL-------LPEAEPRMLSALD 156 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH-HHHHHHHHT-------STTSEEEECCTTC
T ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH-HHHHHHHHh-------cCcCcEEEEeCCC
Confidence 999999999999998887777777777766 899999999999964321 022222221 1235799999999
Q ss_pred CCCchhHHHHHHHH
Q 005218 337 KTGLDDLEVALLLQ 350 (708)
Q Consensus 337 g~GI~~L~~~I~~~ 350 (708)
|.|+++|++.|...
T Consensus 157 g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 157 ERQVAELKADLLAL 170 (301)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998764
No 47
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.84 E-value=5.2e-21 Score=184.42 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=116.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
+.++|+++|++|+|||||+++|.+..+.....+++|.+.....+.+ ++ ..+.||||||++.+..++..+++.+|+++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999998888777888888877777776 55 78999999999999999999999999999
Q ss_pred EEEEccCCCChhHHH-HHHHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 266 LVVAADDGVMPQTLE-AIAHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 266 lVvDa~~g~~~q~~~-~l~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|+|++++...+... .+..+. ..++|+++|+||+|+........ ...... ...+ .++++++||++|.|+++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVET-EDAYKF---AGQM--GIQLFETSAKENVNVEE 160 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCH-HHHHHH---HHHH--TCCEEECBTTTTBSHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCH-HHHHHH---HHHc--CCeEEEEECCCCCCHHH
Confidence 999998843332222 222222 23689999999999864221110 111100 0111 24899999999999999
Q ss_pred HHHHHHHHHHH
Q 005218 343 LEVALLLQAEM 353 (708)
Q Consensus 343 L~~~I~~~~~~ 353 (708)
++++|...+..
T Consensus 161 l~~~l~~~~~~ 171 (181)
T 3tw8_B 161 MFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999886543
No 48
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.84 E-value=4.7e-21 Score=203.93 Aligned_cols=159 Identities=26% Similarity=0.361 Sum_probs=125.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecC-CeeEEEeeCCCcchhh----------hhhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFS----------AMRK 255 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~-g~~v~liDTpG~~~f~----------~~~~ 255 (708)
.+..|+++|+||||||||+|+|++..+.. +..+++|++........ + +..+.||||||+..+. ....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 44689999999999999999999998875 77889999877777776 5 8999999999985433 4556
Q ss_pred cccccccEEEEEEEccCCCChhHHHH-HHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEee
Q 005218 256 RGAAVTDIVVLVVAADDGVMPQTLEA-IAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~q~~~~-l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSA 334 (708)
.++..+|++++|+|++++...++... +..+...++|+++|+||+|+.. +.......+.... ..++...+++++||
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~-~~~~~~~~~~~l~---~~~~~~~~i~~vSA 163 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIG-PAKNVLPLIDEIH---KKHPELTEIVPISA 163 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSS-SGGGGHHHHHHHH---HHCTTCCCEEECBT
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCC-CHHHHHHHHHHHH---HhccCCCeEEEEeC
Confidence 77899999999999999888888888 7777778999999999999962 1122222221111 11223468999999
Q ss_pred ecCCCchhHHHHHHHHH
Q 005218 335 VKKTGLDDLEVALLLQA 351 (708)
Q Consensus 335 ktg~GI~~L~~~I~~~~ 351 (708)
++|.|+++|++.|...+
T Consensus 164 ~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 164 LKGANLDELVKTILKYL 180 (308)
T ss_dssp TTTBSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999998864
No 49
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=3.1e-21 Score=186.99 Aligned_cols=150 Identities=22% Similarity=0.240 Sum_probs=112.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh--------hhccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM--------RKRGA 258 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~--------~~~~~ 258 (708)
++.+|+++|++|+|||||+|+|.+.... .+..+++|++.....+.+ ++..+.+|||||++.+... ...++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 4678999999999999999999987754 467788999887777777 7888999999998653211 12357
Q ss_pred ccccEEEEEEEccCCCChhHHHHHHHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeee
Q 005218 259 AVTDIVVLVVAADDGVMPQTLEAIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 259 ~~aDivllVvDa~~g~~~q~~~~l~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
+.+|++++|+|+++....+....+..+. ..++|+++|+||+|+.+.... ... . ...+++++||+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-----~~~------~--~~~~~~~~SA~ 148 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG-----MSE------V--NGHALIRLSAR 148 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----EEE------E--TTEEEEECCTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh-----hhh------c--cCCceEEEeCC
Confidence 8999999999998866544444433333 236899999999998532111 000 0 13589999999
Q ss_pred cCCCchhHHHHHHHHH
Q 005218 336 KKTGLDDLEVALLLQA 351 (708)
Q Consensus 336 tg~GI~~L~~~I~~~~ 351 (708)
+|.|+++|+++|.+.+
T Consensus 149 ~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 50
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.84 E-value=8.2e-21 Score=184.58 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=119.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
.+.++|+++|++|+|||||+++|.+..+.....++++.++....+.. ++ ..+.||||||++.+...+..+++.+|++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 45689999999999999999999998887777777777776666666 44 6899999999999999999999999999
Q ss_pred EEEEEccCCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 265 VLVVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 265 llVvDa~~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
++|+|+++....+ +...+......++|+++|+||+|+........ .+.... ... ..++++++||++|.|+
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~---~~~--~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF-LEASRF---AQE--NELMFLETSALTGENV 160 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH-HHHHHH---HHH--TTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH-HHHHHH---HHH--cCCEEEEecCCCCCCH
Confidence 9999998743322 22333333346889999999999953211110 111110 011 1358999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++++++|...+.
T Consensus 161 ~~l~~~l~~~~~ 172 (186)
T 2bme_A 161 EEAFVQCARKIL 172 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 51
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.2e-20 Score=182.31 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=109.9
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhccccccc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTD 262 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aD 262 (708)
..+.++|+++|++|+|||||+++|.+..+.. ...++++.++....+.. ++ ..+.+|||||++.+..++..+++.+|
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGCS
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3456899999999999999999999888753 55667777766655555 44 58999999999999999999999999
Q ss_pred EEEEEEEccCCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 263 IVVLVVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 263 ivllVvDa~~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
++++|+|++++...+ +...+......++|+++|+||+|+....... ....... ...+ .++++++||++|.
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~ 159 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVK-REDGEKL---AKEY--GLPFMETSAKTGL 159 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSC-HHHHHHH---HHHH--TCCEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccC-HHHHHHH---HHHc--CCeEEEEeCCCCC
Confidence 999999998743322 2223333333678999999999996432111 1111111 0111 2489999999999
Q ss_pred CchhHHHHHHHHHH
Q 005218 339 GLDDLEVALLLQAE 352 (708)
Q Consensus 339 GI~~L~~~I~~~~~ 352 (708)
|+++++++|...+.
T Consensus 160 gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 160 NVDLAFTAIAKELK 173 (180)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988664
No 52
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.83 E-value=3.5e-21 Score=185.63 Aligned_cols=159 Identities=16% Similarity=0.045 Sum_probs=113.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC--CeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST--GASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~--g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
+.++|+++|++|+|||||+++|.+..+.....++++.++....+.+++ ...+.||||||++.+..++..+++.+|+++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 457999999999999999999998877655555555555555666633 278999999999999999989999999999
Q ss_pred EEEEccCCCChhHHH-HHHHhhh-----cCCC-EEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 266 LVVAADDGVMPQTLE-AIAHANA-----ANVP-IVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 266 lVvDa~~g~~~q~~~-~l~~l~~-----~~~p-iIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
+|+|+++....+... .+..+.. .+.| +++|+||+|+.+..... .+..... ...+ .++++++||++|.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 85 LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK-PEKHLRF---CQEN--GFSSHFVSAKTGD 158 (178)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC-HHHHHHH---HHHH--TCEEEEECTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC-HHHHHHH---HHHc--CCcEEEEeCCCCC
Confidence 999998743322222 1222222 2567 79999999995421100 0111111 0111 2589999999999
Q ss_pred CchhHHHHHHHHHH
Q 005218 339 GLDDLEVALLLQAE 352 (708)
Q Consensus 339 GI~~L~~~I~~~~~ 352 (708)
|+++++++|...+.
T Consensus 159 gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 159 SVFLCFQKVAAEIL 172 (178)
T ss_dssp THHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988653
No 53
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=7.3e-21 Score=181.47 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=110.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.++|+++|++|+|||||+++|.+..+.....++++.++....+.++ ....+.||||||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 4689999999999999999999888876677777777766666663 236899999999999998888889999999999
Q ss_pred EEccCCCCh----hHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 268 VAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 268 vDa~~g~~~----q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+|+++.... .+...+......++|+++|+||+|+...... .+..... ...+ .++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~---~~~~--~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVT--ADQGEAL---AKEL--GIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSC--HHHHHHH---HHHH--TCCEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccC--HHHHHHH---HHHc--CCeEEEEECCCCCCHHHH
Confidence 999874322 2222222222347899999999999432211 1111111 0111 248999999999999999
Q ss_pred HHHHHHHHH
Q 005218 344 EVALLLQAE 352 (708)
Q Consensus 344 ~~~I~~~~~ 352 (708)
+++|...+.
T Consensus 156 ~~~l~~~~~ 164 (170)
T 1g16_A 156 FFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 54
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.3e-20 Score=182.34 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=111.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
++.++|+++|++|+|||||+++|.+..+. ...+ |.+.....+.+ ++..+.+|||||++.+..++..+++.+|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC--CSCSSCEEEEE-TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC--CCccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35689999999999999999999977765 3333 22234445556 78999999999999999988889999999999
Q ss_pred EEEccCCCChhHH-HHHHHhh----hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~q~~-~~l~~l~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++....+.. ..+..+. ..+.|+++|+||+|+.+... +++.+.+.... .. ...++++++||++|.|+
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~--~~--~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS--IK--DHQWHIQACCALTGEGL 165 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG--CC--SSCEEEEECBTTTTBTH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhh--hc--CCCcEEEEccCCCCcCH
Confidence 9999986433322 2333332 25789999999999965321 22222221110 11 12358999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++++++|.+.+.
T Consensus 166 ~~l~~~l~~~~~ 177 (187)
T 1zj6_A 166 CQGLEWMMSRLK 177 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
No 55
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=1.1e-20 Score=187.94 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=117.0
Q ss_pred CCCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccc
Q 005218 184 EILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVT 261 (708)
Q Consensus 184 ~~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~a 261 (708)
....+.++|+++|++|+|||||+++|++..+.....++++.++....+.+ ++ ..+.||||||++.+..++..+++.+
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 33456789999999999999999999988877667777777776666666 55 6899999999999998888889999
Q ss_pred cEEEEEEEccCCCCh----hHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecC
Q 005218 262 DIVVLVVAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 262 DivllVvDa~~g~~~----q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg 337 (708)
|++++|+|+++.... .+...+......++|+++|+||+|+...... ....... ...+ .++++++||++|
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~---~~~~--~~~~~~~Sa~~~ 166 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVT--ADQGEAL---AKEL--GIPFIESSAKND 166 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSC--HHHHHHH---HHHH--TCCEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccC--HHHHHHH---HHHc--CCEEEEEeCCCC
Confidence 999999999874322 2222233323347899999999999432111 1111111 0111 247999999999
Q ss_pred CCchhHHHHHHHHHH
Q 005218 338 TGLDDLEVALLLQAE 352 (708)
Q Consensus 338 ~GI~~L~~~I~~~~~ 352 (708)
.|+++++++|...+.
T Consensus 167 ~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 167 DNVNEIFFTLAKLIQ 181 (213)
T ss_dssp BSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
No 56
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.83 E-value=1.8e-21 Score=206.54 Aligned_cols=243 Identities=15% Similarity=0.179 Sum_probs=161.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcc---------hhhhhhhcc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHA---------AFSAMRKRG 257 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~---------~f~~~~~~~ 257 (708)
++.+|+|+|+||||||||+|+|++..+.. +..+++|++.....+.. ++..++||||||+. .+......+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-CCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 45689999999999999999999988765 66778888765555655 78899999999987 233344567
Q ss_pred cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecC
Q 005218 258 AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg 337 (708)
++.+|++++|+|+++ +..++...+..+...+.|+++++||+|+.. +...+...+... ....+..+++++||++|
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l----~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKADLLPHLQFL----ASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC-CHHHHHHHHHHH----HTTSCCSEEEECCTTTT
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc-cHHHHHHHHHHH----HHhcCcCceEEEECCCC
Confidence 899999999999988 888888888777777899999999999964 122222222221 11112237899999999
Q ss_pred CCchhHHHHHHHHHHHcccccc----cCCC-----------------------cceeEEEEEeeCCCCcEEEEEEEeeEE
Q 005218 338 TGLDDLEVALLLQAEMMNLKAR----VDGP-----------------------AQAYVVEARLDKGRGPLTTAIVKAGTL 390 (708)
Q Consensus 338 ~GI~~L~~~I~~~~~~~~~~~~----~~~p-----------------------~~~~V~e~~~~~~~G~v~~~~V~~G~L 390 (708)
.|+++|++.|...+.......+ .+.| ....+++.+.++.. |++
T Consensus 160 ~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~----------~~~ 229 (301)
T 1ega_A 160 LNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNER----------GGY 229 (301)
T ss_dssp TTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSS----------CSE
T ss_pred CCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCC----------CeE
Confidence 9999999998864321110000 0111 11233333332222 333
Q ss_pred cCCCEEEEccccceEEEEecccCCcccccCCCCcEEEeccCCCCCCCCeEEEeCCHHH
Q 005218 391 VCGQHVVVGHEWGRIRAIRDMVGKSTDKARPAMPVEIEGLKGLPMAGDDIIVVDSEER 448 (708)
Q Consensus 391 ~~gd~v~~g~~~~kVr~i~~~~~~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~v~~~~~ 448 (708)
+....+++-...-+ .-+.+..|..++++.+..+..|.++-+.+..++.++.|....+
T Consensus 230 ~i~~~i~v~~~~~k-~i~ig~~G~~~k~ig~~ar~~i~~~~~~~v~l~l~vkv~~~w~ 286 (301)
T 1ega_A 230 DINGLILVEREGQK-KMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWA 286 (301)
T ss_dssp EEEEEEEESSHHHH-HHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEEEEEEEETTCCC
T ss_pred EEEEEEEEEECCce-EEEECCCcHHHHHHHHHHHHHHHHHHCCCeEEEEEEEECCCcc
Confidence 33333333211000 1122356677777777777888888877778888888877643
No 57
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.83 E-value=2.6e-20 Score=182.54 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=114.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC------------------------------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG------------------------------ 236 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g------------------------------ 236 (708)
+..++|+++|++|+|||||+|+|++..+.....++++.++....+.+ ++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET-TC------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe-cCcccccccccccccccccccccccccccccc
Confidence 35689999999999999999999998876656666655655555554 32
Q ss_pred ---------eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHH-HHHhh-hcCCCEEEEEeCCCCCCCC
Q 005218 237 ---------ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEA-IAHAN-AANVPIVVAINKCDKPAAD 305 (708)
Q Consensus 237 ---------~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~-l~~l~-~~~~piIvViNK~Dl~~~~ 305 (708)
..+.||||||++.+...+..+++.+|++++|+|++++...+.... +..+. ..+.|+++|+||+|+....
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ 163 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc
Confidence 789999999999999998899999999999999988543333322 22232 2468999999999942211
Q ss_pred cchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 306 PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
. ..+++... ...+ .++++++||++|.|+++++++|...+.
T Consensus 164 ~--~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 164 V--DILEVQKY---AQDN--NLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp S--CHHHHHHH---HHHT--TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred C--CHHHHHHH---HHHc--CCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1 11111111 1111 358999999999999999999987653
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.83 E-value=1e-20 Score=182.54 Aligned_cols=161 Identities=18% Similarity=0.156 Sum_probs=105.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec--CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~--~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
+.++|+++|++|+|||||+++|.+..+.....++++.++....+.++ ....+.+|||||++.+...+..+++.+|+++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 45799999999999999999999988776666666666666666553 2468999999999999999889999999999
Q ss_pred EEEEccCCCChhHH----HHHHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecC
Q 005218 266 LVVAADDGVMPQTL----EAIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 266 lVvDa~~g~~~q~~----~~l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg 337 (708)
+|+|+++....+.. ..+.... ..++|+++|+||+|+.............. +.......+++++||++|
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~----~~~~~~~~~~~~~Sa~~~ 162 (182)
T 1ky3_A 87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE----LAKSLGDIPLFLTSAKNA 162 (182)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH----HHHHTTSCCEEEEBTTTT
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHH----HHHhcCCCeEEEEecCCC
Confidence 99999874332222 2222222 15789999999999953211101111111 111112468999999999
Q ss_pred CCchhHHHHHHHHHH
Q 005218 338 TGLDDLEVALLLQAE 352 (708)
Q Consensus 338 ~GI~~L~~~I~~~~~ 352 (708)
.|+++++++|...+.
T Consensus 163 ~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 163 INVDTAFEEIARSAL 177 (182)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 59
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=1.1e-20 Score=211.83 Aligned_cols=164 Identities=18% Similarity=0.297 Sum_probs=126.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCC----------cchhhhhhh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPG----------HAAFSAMRK 255 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG----------~~~f~~~~~ 255 (708)
...++|+++|++|+|||||+|+|++... ..+..+|+|++.....+.. ++..+.|||||| ++.|..++.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 4678999999999999999999998764 4578899999988888877 888999999999 567766655
Q ss_pred -cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcch---hhhhhhhcccchhccCCcceEEE
Q 005218 256 -RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPER---VKNQLGAEGLELEDWGGKVQVVE 331 (708)
Q Consensus 256 -~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~---~~~~l~~~~~~~~~~~~~~~vi~ 331 (708)
.+++.+|++|+|+|++++...++..++..+...++|+|+|+||+|+.+.+... ..+.+.... .+....++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 347 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF----QFLDYAPILF 347 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC----GGGTTSCEEE
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc----ccCCCCCEEE
Confidence 47799999999999999999999999998888999999999999997543322 122222111 1123468999
Q ss_pred EeeecCCCchhHHHHHHHHHHHcc
Q 005218 332 VSAVKKTGLDDLEVALLLQAEMMN 355 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~~~~~~~~ 355 (708)
+||++|.|+++|+++|...+....
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EcCCCCcCHHHHHHHHHHHHHHhc
Confidence 999999999999999988765443
No 60
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.83 E-value=6.7e-21 Score=184.93 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=89.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
..++|+++|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.||||||++.+..++..+++.+|+++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4579999999999999999999988777666777887777666666 55 78999999999999988888999999999
Q ss_pred EEEEccCCCChhHH-HHHHHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 266 LVVAADDGVMPQTL-EAIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 266 lVvDa~~g~~~q~~-~~l~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+|+++....+.. ..+..+. ..++|+++|+||+|+.+..... .+..... ...+ .++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS-KERGEKL---ALDY--GIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSC-HHHHHHH---HHHH--TCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCC-HHHHHHH---HHHc--CCeEEEEeCCCCCCHH
Confidence 99999874322222 2222222 2478999999999996432110 1111111 0111 2589999999999999
Q ss_pred hHHHHHHHHHH
Q 005218 342 DLEVALLLQAE 352 (708)
Q Consensus 342 ~L~~~I~~~~~ 352 (708)
+++++|...+.
T Consensus 160 ~l~~~l~~~i~ 170 (183)
T 2fu5_C 160 NAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 61
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.83 E-value=3e-20 Score=176.63 Aligned_cols=154 Identities=21% Similarity=0.179 Sum_probs=110.5
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVA 269 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvD 269 (708)
++|+++|++|+|||||+++|.+..+.. ..| |.+.....+.. .+..+.+|||||++.+..++..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCC--CSSCCEEEEEC-SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccC--cCceeEEEEEE-CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 479999999999999999998776643 333 33344445555 78999999999999999888889999999999999
Q ss_pred ccCCCChhH-HHHHHHhh----hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 270 ADDGVMPQT-LEAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 270 a~~g~~~q~-~~~l~~l~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
+++....+. ...+..+. ..+.|+++|+||+|+.+... ..+...+. ..... ...++++++||++|.|++++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---LHSLR-HRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---GGGCS-SCCEEEEECBTTTTBTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhC---ccccc-CccEEEEEcccCCCcCHHHH
Confidence 987533222 22333322 23789999999999965322 22222221 11100 12357999999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
+++|...+
T Consensus 153 ~~~l~~~i 160 (164)
T 1r8s_A 153 LDWLSNQL 160 (164)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998753
No 62
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.83 E-value=3e-20 Score=178.90 Aligned_cols=157 Identities=18% Similarity=0.138 Sum_probs=113.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
+.++|+++|++|+|||||+|+|.+..+.....++++.++....+.+ ++ ..+.||||||++.+..++..+++.+|+++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 3578999999999999999999988877666677777766666666 44 58999999999999999999999999999
Q ss_pred EEEEccCCCChh----HHHHHHHhhh----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecC
Q 005218 266 LVVAADDGVMPQ----TLEAIAHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 266 lVvDa~~g~~~q----~~~~l~~l~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg 337 (708)
+|+|+++....+ +...+..... .++|+++|+||+|+..... ..+..... .......+++++||++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~--~~~~~~~~----~~~~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQV--STEEAQAW----CRDNGDYPYFETSAKDA 158 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSS--CHHHHHHH----HHHTTCCCEEECCTTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccccc--CHHHHHHH----HHhcCCceEEEEeCCCC
Confidence 999998743222 2233332222 5789999999999963211 11111111 01012458999999999
Q ss_pred CCchhHHHHHHHHH
Q 005218 338 TGLDDLEVALLLQA 351 (708)
Q Consensus 338 ~GI~~L~~~I~~~~ 351 (708)
.|+++++++|...+
T Consensus 159 ~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 159 TNVAAAFEEAVRRV 172 (177)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 63
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.83 E-value=1.9e-20 Score=178.06 Aligned_cols=157 Identities=24% Similarity=0.250 Sum_probs=110.4
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
..+|+++|++|+|||||+++|.+..+.....+++...+. ..+..+ ....+.||||||++.+..++..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999987776555555544432 333332 356899999999999999998999999999999
Q ss_pred EEccCCCCh----hHHHHHHH-hhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMP----QTLEAIAH-ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~----q~~~~l~~-l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|+++.... .+...+.. ....++|+++|+||+|+.+..... .+..... ...+ ...+++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~-~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG-KEQGQNL---ARQW-CNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC-HHHHHHH---HHHT-TSCEEEECBTTTTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC-HHHHHHH---HHHc-cCCcEEEecCCCCCCHHH
Confidence 999873221 12222222 223589999999999996421110 1111111 0111 246899999999999999
Q ss_pred HHHHHHHHH
Q 005218 343 LEVALLLQA 351 (708)
Q Consensus 343 L~~~I~~~~ 351 (708)
|+++|...+
T Consensus 157 l~~~l~~~i 165 (167)
T 1c1y_A 157 IFYDLVRQI 165 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 64
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.83 E-value=3.2e-20 Score=181.86 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=115.1
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
..++.++|+++|++|+|||||+++|.+..+.....+++..++. .+.. .+..+.||||||++.+..++..+++.+|++
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK-GNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE-TTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe-CCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3445689999999999999999999988776544454444433 3444 789999999999999999998899999999
Q ss_pred EEEEEccCCCChhH-HHHHHHhh----hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 265 VLVVAADDGVMPQT-LEAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 265 llVvDa~~g~~~q~-~~~l~~l~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
++|+|+++....+. ...+..+. ..++|+++|+||+|+..... .++...+. .... .....+++++||++|.
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN---LSAI-QDREICCYSISCKEKD 170 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---GGGC-CSSCEEEEECCTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhC---hhhh-ccCCeeEEEEECCCCC
Confidence 99999987433222 22333322 25889999999999975321 22222221 1110 1124689999999999
Q ss_pred CchhHHHHHHHH
Q 005218 339 GLDDLEVALLLQ 350 (708)
Q Consensus 339 GI~~L~~~I~~~ 350 (708)
|+++|+++|...
T Consensus 171 gv~~l~~~l~~~ 182 (188)
T 1zd9_A 171 NIDITLQWLIQH 182 (188)
T ss_dssp THHHHHHHHHHT
T ss_pred CHHHHHHHHHHH
Confidence 999999999874
No 65
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.83 E-value=8.5e-21 Score=186.80 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=111.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
...++|+++|++|+|||||+++|.+..+.....++++.+.....+.++ ....+.||||||++.+..++..+++.+|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 345789999999999999999999888776666666666666666652 2368999999999999999999999999999
Q ss_pred EEEEccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 266 LVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 266 lVvDa~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+|+++....+.. ..+......++|+++|+||+|+....... .+.... +.......+++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~-~~~~~~----~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT-RQQGEK----FAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC-HHHHHH----HHHTSTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC-HHHHHH----HHHhcCCCeEEEEeCCCCCCHH
Confidence 99999874433332 33333334578999999999995421100 111111 1111124689999999999999
Q ss_pred hHHHHHHHHH
Q 005218 342 DLEVALLLQA 351 (708)
Q Consensus 342 ~L~~~I~~~~ 351 (708)
+++++|...+
T Consensus 179 ~l~~~l~~~i 188 (192)
T 2il1_A 179 EIFLKLVDDI 188 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 66
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=185.44 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=109.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
.+.++|+++|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.||||||++.|..++..+++.+|++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 45689999999999999999999988876656666666666666666 44 6899999999999999999999999999
Q ss_pred EEEEEccCCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcc-eEEEEeeecCCC
Q 005218 265 VLVVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKV-QVVEVSAVKKTG 339 (708)
Q Consensus 265 llVvDa~~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~-~vi~vSAktg~G 339 (708)
|+|+|+++....+ ++..+......++|+++|+||+|+....... .++.... ...+ .+ +++++||++|.|
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS-LAEAQSL---AEHY--DILCAIETSAKDSSN 179 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC-HHHHHHH---HHHT--TCSEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC-HHHHHHH---HHHc--CCCEEEEEeCCCCCC
Confidence 9999998743222 2222222223578999999999996421100 1111111 0111 23 899999999999
Q ss_pred chhHHHHHHHHHH
Q 005218 340 LDDLEVALLLQAE 352 (708)
Q Consensus 340 I~~L~~~I~~~~~ 352 (708)
+++++++|...+.
T Consensus 180 i~~l~~~l~~~i~ 192 (201)
T 2hup_A 180 VEEAFLRVATELI 192 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 67
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.82 E-value=1.4e-20 Score=179.83 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=108.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+++|.+..+.....++++.++....+..+ ....+.+|||||++.+..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 45789999999999999999999888766666666666655555552 33578999999999999988889999999999
Q ss_pred EEEccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 267 VVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 267 VvDa~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+|+++....+.. ..+......++|+++|+||+|+.+..... .+..... ...+ ..+++++||++|.|+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS-IQEAESY---AESV--GAKHYHTSAKQNKGIEE 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC-HHHHHHH---HHHT--TCEEEEEBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC-HHHHHHH---HHHc--CCeEEEecCCCCCCHHH
Confidence 9999874322222 22222233578999999999996421111 0111111 1111 25899999999999999
Q ss_pred HHHHHHHHH
Q 005218 343 LEVALLLQA 351 (708)
Q Consensus 343 L~~~I~~~~ 351 (708)
++++|...+
T Consensus 159 l~~~l~~~~ 167 (170)
T 1z08_A 159 LFLDLCKRM 167 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 68
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=1.3e-20 Score=210.05 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=111.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh---------hhhhhcccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF---------SAMRKRGAA 259 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f---------~~~~~~~~~ 259 (708)
++|+|+|+||||||||+|+|++...+ ..+.+|+|+|.....+.+ ++..+.+|||||++.. ......+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-CCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 68999999999999999999988876 478899999998888888 8899999999997642 334456789
Q ss_pred cccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhh-hhcccchhccCCcceEEEEeeecCC
Q 005218 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQL-GAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 260 ~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l-~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
.||++|+|+|++++....+......+...++|+++|+||+|+... ..... .+. ... +..+++++||++|.
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~----~~~~~~~~~----~~l-g~~~~~~iSA~~g~ 151 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE----FEREVKPEL----YSL-GFGEPIPVSAEHNI 151 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH----HHHHTHHHH----GGG-SSCSCEECBTTTTB
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc----cHHHHHHHH----Hhc-CCCCEEEEeccCCC
Confidence 999999999999988887777777777779999999999998421 01111 111 111 11257999999999
Q ss_pred CchhHHHHHHHHHH
Q 005218 339 GLDDLEVALLLQAE 352 (708)
Q Consensus 339 GI~~L~~~I~~~~~ 352 (708)
|+++|++.|...+.
T Consensus 152 gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 152 NLDTMLETIIKKLE 165 (439)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999987664
No 69
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=3.9e-20 Score=179.30 Aligned_cols=158 Identities=20% Similarity=0.199 Sum_probs=110.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
++.++|+++|++|+|||||+++|.+..+.. ..+++. +....+.+ ++..+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIG--FNVETLSY-KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTT--CCEEEEEE-TTEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc-cCCcCc--cceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 367899999999999999999999877632 222222 33344555 68999999999999999888899999999999
Q ss_pred EEEccCCCChhH-HHHHHHhh----hcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMPQT-LEAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~q~-~~~l~~l~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++....+. ...+..+. ..++|+++|+||+|+.+.. .+++.+.+..... ....++++++||++|.|+
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL----KDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTC----CSSCEEEEEEBGGGTBTH
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccc----cCCceEEEEccCCCCcCH
Confidence 999988644332 23333333 3578999999999996532 1222222211100 112358999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++++++|.+.+.
T Consensus 168 ~~l~~~l~~~~~ 179 (183)
T 1moz_A 168 TEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 70
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.82 E-value=2.6e-20 Score=179.23 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=115.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
+.++|+++|++|+|||||+|+|++..+.....++++.++....+.+ ++ ..+.||||||++.+...+..+++.+|+++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3479999999999999999999988887777778887777666666 44 68999999999999998888999999999
Q ss_pred EEEEccCCCCh----hHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 266 LVVAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 266 lVvDa~~g~~~----q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+|+++.... .+...+......++|+++|+||+|+.+...... ...... ...+ .++++++||++|.|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST-EEGERK---AKEL--NVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH-HHHHHH---HHHH--TCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH-HHHHHH---HHHc--CCeEEEEeCCCCCCHH
Confidence 99999873222 222222222335789999999999964221100 111110 0111 2589999999999999
Q ss_pred hHHHHHHHH
Q 005218 342 DLEVALLLQ 350 (708)
Q Consensus 342 ~L~~~I~~~ 350 (708)
+++++|...
T Consensus 166 ~l~~~l~~~ 174 (179)
T 2y8e_A 166 QLFRRVAAA 174 (179)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998764
No 71
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.82 E-value=2.3e-20 Score=184.81 Aligned_cols=160 Identities=19% Similarity=0.139 Sum_probs=117.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..+ ....+.||||||++.+..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 345799999999999999999999988877677777777766666653 2368999999999999988888999999999
Q ss_pred EEEEccCCCChhHH----HHHHHhhh----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecC
Q 005218 266 LVVAADDGVMPQTL----EAIAHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK 337 (708)
Q Consensus 266 lVvDa~~g~~~q~~----~~l~~l~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg 337 (708)
+|+|++++...+.. ..+..... .++|+++|+||+|+..... ........ .......+++++||++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~----~~~~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV--ATKRAQAW----CYSKNNIPYFETSAKEA 159 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS--CHHHHHHH----HHHTTSCCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccccc--CHHHHHHH----HHhcCCceEEEEeCCCC
Confidence 99999874332222 22222211 4789999999999963221 11111111 11022468999999999
Q ss_pred CCchhHHHHHHHHHH
Q 005218 338 TGLDDLEVALLLQAE 352 (708)
Q Consensus 338 ~GI~~L~~~I~~~~~ 352 (708)
.|+++++++|...+.
T Consensus 160 ~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 160 INVEQAFQTIARNAL 174 (207)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 72
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.82 E-value=6e-20 Score=178.85 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=113.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
++.++|+++|++|+|||||+++|.+.. .....+++. .....+.+ ++..+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEH-RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 467899999999999999999999877 333333322 33344555 78999999999999999999999999999999
Q ss_pred EEEccCCCChhHH-HHHHHhh----hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~q~~-~~l~~l~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++....+.. ..+..+. ..++|+++|+||+|+.+... +++.+.+.. .. .....++++++||++|.|+
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL---DS-IRSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG---GG-CCSSCEEEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhCh---hh-ccCCceEEEEeeCCCCCCH
Confidence 9999875433222 2333322 25789999999999965322 122222211 00 0112468999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++++++|.+.+.
T Consensus 168 ~~l~~~l~~~i~ 179 (186)
T 1ksh_A 168 LPGIDWLLDDIS 179 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 73
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2.3e-20 Score=185.97 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=118.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
.+.++|+++|++|+|||||+++|++..+.....++++.++....+.+ ++ ..+.||||||++.|..++..+++.+|++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 34579999999999999999999998887666777777776666666 44 5899999999999999999999999999
Q ss_pred EEEEEccCCCCh----hHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 265 VLVVAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 265 llVvDa~~g~~~----q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
++|+|+++.... .+...+......++|+++|+||+|+....... .+...... ... .++++++||++|.|+
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~~~---~~~--~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVS-QQRAEEFS---EAQ--DMYYLETSAKESDNV 176 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSC-HHHHHHHH---HHH--TCCEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC-HHHHHHHH---HHc--CCEEEEEeCCCCCCH
Confidence 999999874322 23333333334578999999999995321100 11111110 111 258999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++++++|...+.
T Consensus 177 ~~l~~~l~~~i~ 188 (201)
T 2ew1_A 177 EKLFLDLACRLI 188 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 74
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.82 E-value=1.3e-20 Score=182.01 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=113.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+++|++..+.....++++.++....+.+. ....+.||||||++.+..++..+++.+|++++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence 45799999999999999999999888776555555555544445442 34689999999999999998889999999999
Q ss_pred EEEccCCCChhH-HHHHHHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 267 VVAADDGVMPQT-LEAIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 267 VvDa~~g~~~q~-~~~l~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+|+++....+. ...+..+. ..++|+++|+||+|+.+..... ........ ..+ .++++++||++|.|+++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~-~~~~~~~~---~~~--~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 91 VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT-AEDAQTYA---QEN--GLFFMETSAKTATNVKE 164 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC-HHHHHHHH---HHT--TCEEEECCSSSCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC-HHHHHHHH---HHc--CCEEEEEECCCCCCHHH
Confidence 999987433222 22223333 2378899999999996432111 11111110 111 35899999999999999
Q ss_pred HHHHHHHHH
Q 005218 343 LEVALLLQA 351 (708)
Q Consensus 343 L~~~I~~~~ 351 (708)
++++|...+
T Consensus 165 l~~~l~~~~ 173 (181)
T 2efe_B 165 IFYEIARRL 173 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 999998753
No 75
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.82 E-value=2.8e-20 Score=178.90 Aligned_cols=159 Identities=17% Similarity=0.161 Sum_probs=113.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|.+..+.....++++.++....+..+ ....+.||||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 345799999999999999999999888765555555544444444442 3468999999999999999889999999999
Q ss_pred EEEEccCCCChh----HHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 266 LVVAADDGVMPQ----TLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 266 lVvDa~~g~~~q----~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+|+++....+ +...+......++|+++|+||+|+....... .+..... ...+ .++++++||++|.|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~ 166 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT-YEEAKQF---AEEN--GLLFLEASAKTGENVE 166 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC-HHHHHHH---HHHT--TCEEEECCTTTCTTHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC-HHHHHHH---HHHc--CCEEEEEeCCCCCCHH
Confidence 999998753322 2222333334678999999999995321110 1111111 0111 3589999999999999
Q ss_pred hHHHHHHHHH
Q 005218 342 DLEVALLLQA 351 (708)
Q Consensus 342 ~L~~~I~~~~ 351 (708)
+++++|...+
T Consensus 167 ~l~~~l~~~i 176 (179)
T 1z0f_A 167 DAFLEAAKKI 176 (179)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 76
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.82 E-value=9.4e-21 Score=181.88 Aligned_cols=151 Identities=22% Similarity=0.302 Sum_probs=107.5
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh------hhhhcccc--c
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS------AMRKRGAA--V 260 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~------~~~~~~~~--~ 260 (708)
.++|+++|++|+|||||+|+|.+..+..+..+++|.+.....+.+ ++..+.+|||||++.+. .+...+++ .
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 368999999999999999999987776677788888877766776 78999999999998774 22334443 7
Q ss_pred ccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 261 aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
+|++++|+|+++ .......+..+...++|+++|+||+|+..... ....+.+. ..+ ..+++++||++|.|
T Consensus 82 ~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~--~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 82 PDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE------KIL--GVKVVPLSAAKKMG 151 (165)
T ss_dssp CSEEEEEEETTC--HHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH------HHH--TSCEEECBGGGTBS
T ss_pred CCEEEEEecCCc--hhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH------HHh--CCCEEEEEcCCCCC
Confidence 999999999986 22333344455556899999999999842110 00011111 111 24799999999999
Q ss_pred chhHHHHHHHH
Q 005218 340 LDDLEVALLLQ 350 (708)
Q Consensus 340 I~~L~~~I~~~ 350 (708)
+++++++|.+.
T Consensus 152 v~~l~~~l~~~ 162 (165)
T 2wji_A 152 IEELKKAISIA 162 (165)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 77
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.82 E-value=4.5e-20 Score=179.05 Aligned_cols=157 Identities=20% Similarity=0.200 Sum_probs=112.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
+.++|+++|++|+|||||+|+|.+..+.....++++..+ ...+.. ++ ..+.+|||||++.+..++..+++.+|+++
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 457999999999999999999998877666666666555 334444 44 45677999999999999999999999999
Q ss_pred EEEEccCCCCh----hHHHHH-HHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeee-cCCC
Q 005218 266 LVVAADDGVMP----QTLEAI-AHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV-KKTG 339 (708)
Q Consensus 266 lVvDa~~g~~~----q~~~~l-~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAk-tg~G 339 (708)
+|+|+++.... .+...+ ......++|+++|+||+|+.+..... .+..... ...+ .++++++||+ +|.|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVT-RDQGKEM---ATKY--NIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSC-HHHHHHH---HHHH--TCCEEEEBCSSSCBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcC-HHHHHHH---HHHh--CCeEEEeccCCCCCC
Confidence 99999874222 222222 22334688999999999996422111 1111111 1111 2589999999 9999
Q ss_pred chhHHHHHHHHHH
Q 005218 340 LDDLEVALLLQAE 352 (708)
Q Consensus 340 I~~L~~~I~~~~~ 352 (708)
+++++++|.+.+.
T Consensus 169 v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 169 VDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 78
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.82 E-value=1.7e-20 Score=184.46 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=112.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|.+..+.....+++..++.. .+... ....+.||||||++.|..++..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 456899999999999999999999988765555555554443 33331 3356799999999999999999999999999
Q ss_pred EEEEccCCCChhHH-H-HHHHhh--hcCCCEEEEEeCCCCCCCCcchh-hhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 266 LVVAADDGVMPQTL-E-AIAHAN--AANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 266 lVvDa~~g~~~q~~-~-~l~~l~--~~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
+|+|+++....... . .+..+. ..++|+++|+||+|+.......+ .+...... ..+ +..+++++||++|.|+
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC---QKL-GCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH---HHH-TCSCEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHH---Hhc-CCCEEEEeecCCCCCH
Confidence 99999874332221 1 112222 23789999999999964321111 11111110 111 1123999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++++++|.+.+.
T Consensus 176 ~~l~~~l~~~i~ 187 (194)
T 3reg_A 176 NEVFEKSVDCIF 187 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 79
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=8.5e-21 Score=196.74 Aligned_cols=150 Identities=21% Similarity=0.241 Sum_probs=118.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh----------hhhccc-
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA----------MRKRGA- 258 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~----------~~~~~~- 258 (708)
++|+++|+||+|||||+|+|++.....+..+|+|.+.....+.+ ++..+.||||||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 68999999999999999999999887888899999888888877 788999999999987753 333455
Q ss_pred -ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeec
Q 005218 259 -AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 259 -~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
..+|++++|+|+++ .........++...++|+++|+||+|+..... ......+.. .+ .+|++++||++
T Consensus 81 ~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~------~l--g~~vi~~SA~~ 150 (256)
T 3iby_A 81 DLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLES------LL--GCSVIPIQAHK 150 (256)
T ss_dssp HSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHH------HH--CSCEEECBGGG
T ss_pred hCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHH------Hc--CCCEEEEECCC
Confidence 78999999999987 34555666777788999999999999853211 111111111 11 25899999999
Q ss_pred CCCchhHHHHHHHH
Q 005218 337 KTGLDDLEVALLLQ 350 (708)
Q Consensus 337 g~GI~~L~~~I~~~ 350 (708)
|.|+++|+++|...
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998763
No 80
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=180.65 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=112.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
..+.++|+++|++|+|||||+++|.+... .....+ |.++....+.+ ++..+.||||||++.+..++..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP--TIGFSIEKFKS-SSLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCC--CSSEEEEEEEC-SSCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCC--ccceeEEEEEE-CCEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 34678999999999999999999998773 333333 33344455566 679999999999999999999999999999
Q ss_pred EEEEEccCCCChhH-HHHHHHhh-h-----cCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhcc-CCcceEEEEeee
Q 005218 265 VLVVAADDGVMPQT-LEAIAHAN-A-----ANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDW-GGKVQVVEVSAV 335 (708)
Q Consensus 265 llVvDa~~g~~~q~-~~~l~~l~-~-----~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~-~~~~~vi~vSAk 335 (708)
++|+|+++....+. ...+..+. . .++|+++|+||+|+.+.. .+++.+.+.. ..+ ...++++++||+
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCL-----ENIKDKPWHICASDAI 169 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTG-----GGCCSSCEEEEECBTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhCh-----hhccCCceEEEEccCC
Confidence 99999987422222 12222222 1 478999999999996532 1222222210 111 124689999999
Q ss_pred cCCCchhHHHHHHHHH
Q 005218 336 KKTGLDDLEVALLLQA 351 (708)
Q Consensus 336 tg~GI~~L~~~I~~~~ 351 (708)
+|.|+++|+++|.+.+
T Consensus 170 ~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQI 185 (190)
T ss_dssp TTBTHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998754
No 81
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.82 E-value=6.1e-20 Score=182.01 Aligned_cols=159 Identities=25% Similarity=0.287 Sum_probs=105.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.+..+|+++|++|||||||+++|.+..+.. ..+ |.......+.+ ++..+.+|||||++.+..++..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVP--TLHPTSEELTI-AGMTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------C--CCCCSCEEEEE-TTEEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCC--CCCceeEEEEE-CCEEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 356789999999999999999999877643 122 22222345556 67999999999999999998899999999999
Q ss_pred EEEccCCCChhH-HHHHHHhh----hcCCCEEEEEeCCCCCCC-Ccchhhhhhhhcccc-------hh-ccCCcceEEEE
Q 005218 267 VVAADDGVMPQT-LEAIAHAN----AANVPIVVAINKCDKPAA-DPERVKNQLGAEGLE-------LE-DWGGKVQVVEV 332 (708)
Q Consensus 267 VvDa~~g~~~q~-~~~l~~l~----~~~~piIvViNK~Dl~~~-~~~~~~~~l~~~~~~-------~~-~~~~~~~vi~v 332 (708)
|+|+++....+. ...+..+. ..++|+++|+||+|+... +.++..+.+...... +. ......+++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 178 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEE
Confidence 999987533222 22222222 257999999999999652 122222222211100 00 01134689999
Q ss_pred eeecCCCchhHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLL 349 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~ 349 (708)
||++|.|+++++++|.+
T Consensus 179 SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 179 SVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp BTTTTBSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999999875
No 82
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.82 E-value=3.3e-20 Score=179.68 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=111.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
+.++|+++|++|+|||||+++|.+..+.....+.+...+ ...+.. ++ ..+.||||||++.|..++..+++.+|+++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 357999999999999999999998776655555544444 444444 44 67899999999999888888999999999
Q ss_pred EEEEccCCCChhHHHH-----HHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 266 LVVAADDGVMPQTLEA-----IAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~-----l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
+|+|+++....+.... ...+...++|+++|+||+|+....... .+..... ...+ ..+++++||++|.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS-YEEGKAL---AESW--NAAFLESSAKENQTA 156 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSC-HHHHHHH---HHHT--TCEEEECCTTSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceec-HHHHHHH---HHHh--CCcEEEEecCCCCCH
Confidence 9999987322222211 122233578999999999996432111 1111111 1111 358999999999999
Q ss_pred hhHHHHHHHHHHHc
Q 005218 341 DDLEVALLLQAEMM 354 (708)
Q Consensus 341 ~~L~~~I~~~~~~~ 354 (708)
+++++.|...+...
T Consensus 157 ~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 157 VDVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876543
No 83
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.82 E-value=6.1e-20 Score=178.58 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=110.7
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
..+.++|+++|++|+|||||+++|.+..+.. ..+++ ......+.+ ++..+.||||||++.+..++..+++.+|+++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~t~--~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTI--GSNVEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEE-EECCS--SSSCEEEEE-TTEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCc-cCCcC--ceeeEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3467899999999999999999999887732 11111 122334555 7899999999999999999999999999999
Q ss_pred EEEEccCCCChhHH-HHHHHhh----hcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 266 LVVAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 266 lVvDa~~g~~~q~~-~~l~~l~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
+|+|+++....+.. ..+..+. ..++|+++|+||+|+.... .+++.+.+..... ....++++++||++|.|
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI----KDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC----CSSCEEEEECBTTTTBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccc----cCCceEEEEccCCCCcC
Confidence 99999986443332 3333332 3678999999999996532 2222222211100 11235899999999999
Q ss_pred chhHHHHHHH
Q 005218 340 LDDLEVALLL 349 (708)
Q Consensus 340 I~~L~~~I~~ 349 (708)
+++++++|.+
T Consensus 170 i~~l~~~l~~ 179 (181)
T 2h17_A 170 LCQGLEWMMS 179 (181)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.82 E-value=9.2e-20 Score=179.36 Aligned_cols=158 Identities=22% Similarity=0.207 Sum_probs=109.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.+..+|+++|++|||||||+++|.+..+.. ..+ |.......+.+ ++..+.+|||||++.+..++..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQP--TWHPTSEELAI-GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCC--CCSCEEEEEEE-TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-ccc--CCCCCeEEEEE-CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 456799999999999999999999877643 112 22223345556 77999999999999999888889999999999
Q ss_pred EEEccCCCChhHH-HHHHHhh----hcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccc----hhccCCcceEEEEeeec
Q 005218 267 VVAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAAD-PERVKNQLGAEGLE----LEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 267 VvDa~~g~~~q~~-~~l~~l~----~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~----~~~~~~~~~vi~vSAkt 336 (708)
|+|++++...+.. ..+..+. ..+.|+++|+||+|+.... .+++.+.+...... + .....++++++||++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~ 175 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRI-EGQRPVEVFMCSVVM 175 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---C-CSSCCEEEEECBTTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccc-cccceEEEEEeECCc
Confidence 9999985432222 2222222 3578999999999997522 22222222111000 0 011346899999999
Q ss_pred CCCchhHHHHHHH
Q 005218 337 KTGLDDLEVALLL 349 (708)
Q Consensus 337 g~GI~~L~~~I~~ 349 (708)
|.|+++++++|.+
T Consensus 176 g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 176 RNGYLEAFQWLSQ 188 (190)
T ss_dssp TBSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999864
No 85
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.82 E-value=7.4e-20 Score=178.86 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=114.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
++.++|+++|++|+|||||+++|.+..+.. ..+++ ......+.. ++..+.+|||||++.+...+..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~--~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTV--GVNLETLQY-KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSST--TCCEEEEEE-TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCC--ceEEEEEEE-CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 356899999999999999999998776643 23322 233444555 78999999999999999888889999999999
Q ss_pred EEEccCCCChhH-HHHHHHhhh----cCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMPQT-LEAIAHANA----ANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~q~-~~~l~~l~~----~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++....+. ...+..+.. .+.|+++|+||+|+.+... +++...+.. ... ....++++++||++|.|+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGV---SSI-MNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTG---GGC-CSSCEEEEECCTTTCTTH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhCh---hhc-cCCceEEEEccCCCccCH
Confidence 999998643332 223333322 4789999999999965322 222222211 110 112358999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++++++|...+.
T Consensus 172 ~~l~~~l~~~i~ 183 (189)
T 2x77_A 172 VEGMDWLVERLR 183 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 86
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=5e-20 Score=179.91 Aligned_cols=157 Identities=19% Similarity=0.280 Sum_probs=115.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCC----------cchhhhhhh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPG----------HAAFSAMRK 255 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG----------~~~f~~~~~ 255 (708)
...++|+++|++|+|||||+|+|++..... ...+++|.+..... .+..+.+||||| ++.+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 356799999999999999999999887543 55667776654333 245789999999 555666555
Q ss_pred cccc---cccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEE
Q 005218 256 RGAA---VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVE 331 (708)
Q Consensus 256 ~~~~---~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~ 331 (708)
.+++ .+|++++|+|++++........+..+...++|+++|+||+|+.+... ....+.+.. .....+..++++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 172 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRK----VFSKYGEYTIIP 172 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHH----HHHSSCCSCEEE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHH----HHhhcCCCceEE
Confidence 5554 45999999999988887777777788778999999999999964221 111111111 111123468999
Q ss_pred EeeecCCCchhHHHHHHHHH
Q 005218 332 VSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~~~~ 351 (708)
+||++|.|+++|+++|.+.+
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHh
Confidence 99999999999999998764
No 87
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.82 E-value=5e-20 Score=182.18 Aligned_cols=160 Identities=13% Similarity=0.073 Sum_probs=113.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
...++|+++|++|+|||||+++|++..+.....++++.++....+... .+..+.||||||++.+..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 345799999999999999999999888765555554444444444442 3568999999999999999999999999999
Q ss_pred EEEEccCCCChhHHH-HHHHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 266 LVVAADDGVMPQTLE-AIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 266 lVvDa~~g~~~q~~~-~l~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+|++++...+... .+..+. ..+.|+++|+||+|+....... ....... ...+ .++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS-SERGRQL---ADHL--GFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSC-HHHHHHH---HHHH--TCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccC-HHHHHHH---HHHC--CCeEEEEECCCCCCHH
Confidence 999998743222222 222222 2578999999999996432111 1111111 0111 2489999999999999
Q ss_pred hHHHHHHHHHH
Q 005218 342 DLEVALLLQAE 352 (708)
Q Consensus 342 ~L~~~I~~~~~ 352 (708)
+++++|...+.
T Consensus 160 ~l~~~l~~~i~ 170 (203)
T 1zbd_A 160 QTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 88
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.82 E-value=3.6e-20 Score=185.48 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=112.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
...++|+++|++|+|||||+|+|++..+.....+.++.+.....+...++ ..+.||||||++.+..++..++..+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 34579999999999999999999987765543343333333333333222 7899999999999998888889999999
Q ss_pred EEEEEccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 265 VLVVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 265 llVvDa~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+|++++...+.. ..+......++|+++|+||+|+...... ......... . ....+++++||++|.|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~---~--~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI-SKKLVMEVL---K--GKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----C-CHHHHHHHT---T--TCCCEEEEEBTTTTBTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc-CHHHHHHHH---H--HcCCcEEEEecCCCCCH
Confidence 999999985433333 3334444457899999999999643111 011111110 1 12358999999999999
Q ss_pred hhHHHHHHHHHHHc
Q 005218 341 DDLEVALLLQAEMM 354 (708)
Q Consensus 341 ~~L~~~I~~~~~~~ 354 (708)
++++++|...+...
T Consensus 163 ~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 163 GLPFLHLARIFTGR 176 (218)
T ss_dssp THHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999876543
No 89
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.82 E-value=3.5e-20 Score=180.10 Aligned_cols=156 Identities=24% Similarity=0.333 Sum_probs=107.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
+.++|+++|++|+|||||+|+|.+..+.....+.+ .+.....+.. ++ ..+.||||||++.+..++..+++.+|+++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35789999999999999999999887655444444 3333344444 44 45788999999999999999999999999
Q ss_pred EEEEccCCCChhHHHH----HH-HhhhcCCCEEEEEeCCCCCCCCcc-hhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 266 LVVAADDGVMPQTLEA----IA-HANAANVPIVVAINKCDKPAADPE-RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~----l~-~l~~~~~piIvViNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
+|+|+++....+.... +. .....+.|+++|+||+|+...... .....+.. .+ ..+++++||++|.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~g 152 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR------SY--GIPFIETSAKTRQG 152 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH------HH--TCCEEECCTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH------Hc--CCeEEEEeCCCCCC
Confidence 9999987432222221 11 122357899999999999643211 11111111 11 24899999999999
Q ss_pred chhHHHHHHHHHHH
Q 005218 340 LDDLEVALLLQAEM 353 (708)
Q Consensus 340 I~~L~~~I~~~~~~ 353 (708)
+++++++|...+..
T Consensus 153 i~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 153 VDDAFYTLVREIRK 166 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 90
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.82 E-value=4.1e-20 Score=180.77 Aligned_cols=157 Identities=20% Similarity=0.212 Sum_probs=107.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccc----------cCceEEeeeEEEE-Eec-CCeeEEEeeCCCcchhhhhhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKE----------AGGITQHMGAFVV-GMS-TGASITFLDTPGHAAFSAMRK 255 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~----------~~gtT~di~~~~v-~~~-~g~~v~liDTpG~~~f~~~~~ 255 (708)
+.++|+++|++|||||||++.|.+....... .+++..++....+ ..+ ....+.||||||++.|..++.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 4579999999999999999877654432211 1122222221111 111 456899999999999999999
Q ss_pred cccccccEEEEEEEccCCCChhHHHHHHHhh---------hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCC
Q 005218 256 RGAAVTDIVVLVVAADDGVMPQTLEAIAHAN---------AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGG 325 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~q~~~~l~~l~---------~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~ 325 (708)
.+++.+|++|+|+|++++...+..+.+..+. ..++|+++|+||+|+.+... ++..+.+.. + +
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-------~-~ 164 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP-------E-G 164 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-------T-C
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHh-------c-C
Confidence 9999999999999999755444444333222 15889999999999965321 111111111 1 1
Q ss_pred cceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 326 KVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 326 ~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
..+++++||++|.|+++++++|...+.
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 228999999999999999999988654
No 91
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.82 E-value=5.1e-20 Score=179.38 Aligned_cols=160 Identities=18% Similarity=0.103 Sum_probs=114.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeee-EEEEEecC----------CeeEEEeeCCCcchhhhhhh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMG-AFVVGMST----------GASITFLDTPGHAAFSAMRK 255 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~-~~~v~~~~----------g~~v~liDTpG~~~f~~~~~ 255 (708)
.+.++|+++|++|+|||||+++|.+..+.....++++.++. ...+...+ ...+.||||||++.+...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 34579999999999999999999988776555555555554 33444422 36899999999999999999
Q ss_pred cccccccEEEEEEEccCCCChhHH-HHHHHhhh----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEE
Q 005218 256 RGAAVTDIVVLVVAADDGVMPQTL-EAIAHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVV 330 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~q~~-~~l~~l~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 330 (708)
.+++.+|++++|+|+++....+.. ..+..+.. .++|+++|+||+|+...... ..+...... ... .++++
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~---~~~--~~~~~ 162 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAV-KEEEARELA---EKY--GIPYF 162 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCS-CHHHHHHHH---HHH--TCCEE
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccc-CHHHHHHHH---HHc--CCCEE
Confidence 999999999999999874333222 22222221 58899999999999542110 011111110 111 24899
Q ss_pred EEeeecCCCchhHHHHHHHHHH
Q 005218 331 EVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 331 ~vSAktg~GI~~L~~~I~~~~~ 352 (708)
++||++|.|+++++++|...+.
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 92
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.82 E-value=1.7e-20 Score=177.83 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=109.1
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
..+|+++|++|+|||||+++|.+..+.....++++... ...+... ....+.||||||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 47899999999999999999998877655444444332 3334442 235699999999999999988899999999999
Q ss_pred EEccCCCChhHHH-----HHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMPQTLE-----AIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~q~~~-----~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|+++....+... ........+.|+++|+||+|+....... ....... ...+ .++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS-SSEGRAL---AEEW--GCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSC-HHHHHHH---HHHH--TSCEEEECTTCHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCC-HHHHHHH---HHHh--CCCEEEecCCCCcCHHH
Confidence 9998743222111 1122223589999999999985321110 1111111 0111 24899999999999999
Q ss_pred HHHHHHHHH
Q 005218 343 LEVALLLQA 351 (708)
Q Consensus 343 L~~~I~~~~ 351 (708)
|+++|...+
T Consensus 156 l~~~l~~~~ 164 (167)
T 1kao_A 156 LFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 93
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=2e-20 Score=178.16 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=111.7
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.++|+++|++|+|||||+++|.+..+.....++++.+.....+.++ ....+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 3689999999999999999999888766555655555544444442 345899999999999999988999999999999
Q ss_pred EEccCCCChhHHHH-HHHh---hhcCCCEEEEEeCCCCCCCCc-chhhhh-hhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGVMPQTLEA-IAHA---NAANVPIVVAINKCDKPAADP-ERVKNQ-LGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~~~q~~~~-l~~l---~~~~~piIvViNK~Dl~~~~~-~~~~~~-l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+++....+.... +..+ ...+.|+++|+||+|+..... ..+... .... ...+ .++++++||++|.|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~ 157 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKL---AEEK--GLLFFETSAKTGENVN 157 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH---HHHH--TCEEEECCTTTCTTHH
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHH---HHHc--CCEEEEEeCCCCCCHH
Confidence 99987433222221 2222 234789999999999964321 111111 1110 0111 2589999999999999
Q ss_pred hHHHHHHHH
Q 005218 342 DLEVALLLQ 350 (708)
Q Consensus 342 ~L~~~I~~~ 350 (708)
+++++|...
T Consensus 158 ~l~~~l~~~ 166 (170)
T 1ek0_A 158 DVFLGIGEK 166 (170)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999998763
No 94
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.82 E-value=5.3e-20 Score=182.61 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=117.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|.+..+.....++++.++....+.++ ....+.||||||++.+..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 345799999999999999999999988877667777766665566652 2358999999999999999999999999999
Q ss_pred EEEEccCCCChhHHH----HHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 266 LVVAADDGVMPQTLE----AIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 266 lVvDa~~g~~~q~~~----~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+|+++....+... .+......+.|+++|+||+|+....... ....... ...+ .++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE-YDVAKEF---ADAN--KMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC-HHHHHHH---HHHT--TCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC-HHHHHHH---HHHc--CCeEEEEeCCCCCCHH
Confidence 999998743322222 2222223568999999999996432111 0111111 0111 2589999999999999
Q ss_pred hHHHHHHHHHH
Q 005218 342 DLEVALLLQAE 352 (708)
Q Consensus 342 ~L~~~I~~~~~ 352 (708)
+++++|...+.
T Consensus 160 ~l~~~l~~~i~ 170 (206)
T 2bcg_Y 160 DAFLTMARQIK 170 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 95
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.82 E-value=2e-20 Score=178.07 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=113.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+++|.+..+.....++++.++....+..+ ....+.||||||++.+..++..+++.+|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 45799999999999999999999887766656666656555555552 24689999999999998888888999999999
Q ss_pred EEEccCCCChhHHH-HHHHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 267 VVAADDGVMPQTLE-AIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 267 VvDa~~g~~~q~~~-~l~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|+|+++....+... .+..+.. .+.|+++|+||+|+....... .+..... ...+ .++++++||++|.|++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIK-NEEAEGL---AKRL--KLRFYRTSVKEDLNVSEV 157 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSC-HHHHHHH---HHHH--TCEEEECBTTTTBSSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccC-HHHHHHH---HHHc--CCeEEEEecCCCCCHHHH
Confidence 99998743222221 2222221 488999999999996421100 1111111 0111 248999999999999999
Q ss_pred HHHHHHHH
Q 005218 344 EVALLLQA 351 (708)
Q Consensus 344 ~~~I~~~~ 351 (708)
+++|...+
T Consensus 158 ~~~l~~~~ 165 (168)
T 1z2a_A 158 FKYLAEKH 165 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 96
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.82 E-value=3.2e-20 Score=176.74 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=110.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+++|.+..+.....+.++.+.....+... .+..+.+|||||++.+...+..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 35789999999999999999999887765444444444433344442 36789999999999999998889999999999
Q ss_pred EEEccCCCChhHHH-HHHHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 267 VVAADDGVMPQTLE-AIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 267 VvDa~~g~~~q~~~-~l~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+|+++....+... .+..+. ..++|+++|+||+|+.+...... +..... ... ...+++++||++|.|+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~-~~~~~~---~~~--~~~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDF-QEAQSY---ADD--NSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH-HHHHHH---HHH--TTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCH-HHHHHH---HHH--cCCeEEEEeCCCCCCHHH
Confidence 99998743222222 222222 34788999999999953211110 111111 011 135899999999999999
Q ss_pred HHHHHHHH
Q 005218 343 LEVALLLQ 350 (708)
Q Consensus 343 L~~~I~~~ 350 (708)
|+++|...
T Consensus 159 l~~~i~~~ 166 (170)
T 1r2q_A 159 IFMAIAKK 166 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998763
No 97
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.81 E-value=9.9e-20 Score=184.35 Aligned_cols=161 Identities=14% Similarity=0.224 Sum_probs=112.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcc------h----hhhhhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA------A----FSAMRKR 256 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~------~----f~~~~~~ 256 (708)
.+.++|+++|++|+|||||+|+|++..+.....+++|.++....+.. .+..+.||||||+. . +..+ ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTTI-TA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHHH-HH
Confidence 45689999999999999999999998887777788888887777666 77999999999983 2 2212 23
Q ss_pred ccccccEEEEEEEccCCCC---hhHHHHHHHhhhc--CCCEEEEEeCCCCCCCCcc-hh-hhhhhhcccchhccCCcceE
Q 005218 257 GAAVTDIVVLVVAADDGVM---PQTLEAIAHANAA--NVPIVVAINKCDKPAADPE-RV-KNQLGAEGLELEDWGGKVQV 329 (708)
Q Consensus 257 ~~~~aDivllVvDa~~g~~---~q~~~~l~~l~~~--~~piIvViNK~Dl~~~~~~-~~-~~~l~~~~~~~~~~~~~~~v 329 (708)
.+..+|++|+|+|+++... ..+...+..+... ++|+++|+||+|+...... .. ...+... ....+...++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 181 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQI---LDNVKNPIKF 181 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHH---HHHCCSCEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHH---HHhcCCCceE
Confidence 3678899999999998644 2344555555554 8999999999999643211 10 0111110 1111122689
Q ss_pred EEEeeecCCCchhHHHHHHHHHH
Q 005218 330 VEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 330 i~vSAktg~GI~~L~~~I~~~~~ 352 (708)
+++||++|.|+++|+++|...+.
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 98
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.81 E-value=6.3e-20 Score=174.73 Aligned_cols=155 Identities=20% Similarity=0.145 Sum_probs=90.0
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEe-cCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGM-STGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~-~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.++|+++|++|+|||||+++|.+..... ...+++|.+. .+.. .....+.+|||||++.+..++..+++.+|++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 4789999999999999999999776643 4445666542 2222 145678999999999999999999999999999
Q ss_pred EEEccCCCChhHH-HHHHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 267 VVAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 267 VvDa~~g~~~q~~-~~l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|+|+++....+.. ..+..+. ..++|+++|+||+|+.+...... ...... ...+ ..+++++||++|.|++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~---~~~~--~~~~~~~Sa~~~~gi~ 152 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV-DEGRAC---AVVF--DCKFIETSAALHHNVQ 152 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH-HHHHHH---HHHT--TCEEEECBGGGTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH-HHHHHH---HHHh--CCcEEEeccCCCCCHH
Confidence 9999874322222 2222222 24789999999999964321111 111110 0111 2589999999999999
Q ss_pred hHHHHHHHHHH
Q 005218 342 DLEVALLLQAE 352 (708)
Q Consensus 342 ~L~~~I~~~~~ 352 (708)
+++++|...+.
T Consensus 153 ~l~~~l~~~~~ 163 (166)
T 3q72_A 153 ALFEGVVRQIR 163 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 99
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.81 E-value=2.5e-20 Score=184.80 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=108.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
.+.++|+++|++|+|||||+++|++..+.....++++.++....+.. ++ ..+.||||||++.+..++..+++.+|++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 45689999999999999999999988887666677666666666665 44 7899999999999988888889999999
Q ss_pred EEEEEccCCCChhH----HHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 265 VLVVAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 265 llVvDa~~g~~~q~----~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+|+++....+. ...+......++|+++|+||+|+........ .+.... ... ..++++++||++|.|+
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-~~~~~~---~~~--~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF-LEASRF---AQE--NELMFLETSALTGENV 175 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH-HHHHHH---HHH--TTCEEEEECTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH-HHHHHH---HHH--cCCEEEEEeCCCCCCH
Confidence 99999987432222 2222222335789999999999953211110 111110 011 1358999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++++++|...+.
T Consensus 176 ~~l~~~l~~~i~ 187 (200)
T 2o52_A 176 EEAFLKCARTIL 187 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 100
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=9.5e-21 Score=187.36 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=105.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|++..+.....+.++.++....+.++ ....+.||||||++.+..++..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 456899999999999999999999887755444544445544445442 2367999999999999999888999999999
Q ss_pred EEEEccCCCChhH----HHHHHHhhhcCCCEEEEEeCCCCCCCC----cchhhh-hhhhcccchhccCCcceEEEEeeec
Q 005218 266 LVVAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAAD----PERVKN-QLGAEGLELEDWGGKVQVVEVSAVK 336 (708)
Q Consensus 266 lVvDa~~g~~~q~----~~~l~~l~~~~~piIvViNK~Dl~~~~----~~~~~~-~l~~~~~~~~~~~~~~~vi~vSAkt 336 (708)
+|+|++++...+. ...+......++|+++|+||+|+.+.. ...+.. ..... ...+ .++++++||++
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~SA~~ 180 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL---AMTY--GALFCETSAKD 180 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH---HHHH--TCEEEECCTTT
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHH---HHHc--CCeEEEeeCCC
Confidence 9999987433222 222333333578999999999995210 011101 11100 0111 35899999999
Q ss_pred CCCchhHHHHHHHHH
Q 005218 337 KTGLDDLEVALLLQA 351 (708)
Q Consensus 337 g~GI~~L~~~I~~~~ 351 (708)
|.|+++++++|...+
T Consensus 181 g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 181 GSNIVEAVLHLAREV 195 (199)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998754
No 101
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.81 E-value=6e-20 Score=180.23 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=111.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|.+..+.....++++.++....+..+ ....+.||||||++.+..++..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 355799999999999999999999988776555555555555555552 2368999999999999988888999999999
Q ss_pred EEEEccCCCChhH----HHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 266 LVVAADDGVMPQT----LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 266 lVvDa~~g~~~q~----~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+|+++....+. +..+......++|+++|+||+|+....... .+...... ..+ .++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~---~~~--~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK-REEGEAFA---REH--GLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC-HHHHHHHH---HHH--TCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccC-HHHHHHHH---HHc--CCEEEEEeCCCCCCHH
Confidence 9999987432222 222222223478999999999995321100 11111110 111 2589999999999999
Q ss_pred hHHHHHHHHHH
Q 005218 342 DLEVALLLQAE 352 (708)
Q Consensus 342 ~L~~~I~~~~~ 352 (708)
+++++|...+.
T Consensus 173 ~l~~~l~~~i~ 183 (191)
T 2a5j_A 173 EAFINTAKEIY 183 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 102
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.81 E-value=2.3e-20 Score=183.18 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=113.0
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
..+.++|+++|++|+|||||+++|.+..+.....++++.++....+... .+..+.||||||++.+..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 3456899999999999999999999988766555544444443334332 457899999999999998888899999999
Q ss_pred EEEEEccCCCChhHH-HHHHHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 265 VLVVAADDGVMPQTL-EAIAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 265 llVvDa~~g~~~q~~-~~l~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+|+++....+.. ..+..+. ..++|+++|+||+|+....... ....... .... .++++++||++|.|+
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP-TEEARMF---AENN--GLLFLETSALDSTNV 175 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC-HHHHHHH---HHHT--TCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC-HHHHHHH---HHHc--CCEEEEEeCCCCCCH
Confidence 999999874332222 2222222 3478999999999996421110 1111111 0111 358999999999999
Q ss_pred hhHHHHHHHHH
Q 005218 341 DDLEVALLLQA 351 (708)
Q Consensus 341 ~~L~~~I~~~~ 351 (708)
++++++|...+
T Consensus 176 ~~l~~~l~~~i 186 (193)
T 2oil_A 176 ELAFETVLKEI 186 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 103
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.81 E-value=7.8e-20 Score=180.20 Aligned_cols=157 Identities=22% Similarity=0.219 Sum_probs=108.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
++.++|+++|++|+|||||+++|.+..+.. ..+ |.++....+.. .+..+.+|||||++.+..++..+++.+|++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEY-KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEE--ETTEEEEEEEE-TTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCC--cCceeEEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 456899999999999999999998877653 222 33344445555 78999999999999999888889999999999
Q ss_pred EEEccCCCChhH-HHHHHHhhh----cCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMPQT-LEAIAHANA----ANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~q~-~~~l~~l~~----~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++....+. ...+..+.. .++|+++|+||+|+.+... +++.+.+. ..... ...++++++||++|.|+
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---~~~~~-~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLG---LQHLR-SRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---GGGCS-SCCEEEEECBTTTTBTH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhC---ccccc-CCceEEEECcCCCcCCH
Confidence 999987533222 223333222 4789999999999965321 22222221 11111 12358999999999999
Q ss_pred hhHHHHHHHHH
Q 005218 341 DDLEVALLLQA 351 (708)
Q Consensus 341 ~~L~~~I~~~~ 351 (708)
++++++|...+
T Consensus 179 ~~l~~~l~~~i 189 (192)
T 2b6h_A 179 YDGLDWLSHEL 189 (192)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 104
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.81 E-value=4.7e-20 Score=175.84 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=110.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+|+|.+..+.....+.+..++....+... ....+.+|||||++.+..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 34799999999999999999999888655444433333333333332 34789999999999999988889999999999
Q ss_pred EEEccCCCChhHH----HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 267 VVAADDGVMPQTL----EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 267 VvDa~~g~~~q~~----~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+|+++....+.. ..+......+.|+++|+||+|+.+.... ..+..... ...+ ..+++++||++|.|+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v-~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREV-MERDAKDY---ADSI--HAIFVETSAKNAININE 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCS-CHHHHHHH---HHHT--TCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccccc-CHHHHHHH---HHHc--CCEEEEEeCCCCcCHHH
Confidence 9999874332322 2222222356789999999999642110 01111111 0111 25899999999999999
Q ss_pred HHHHHHHH
Q 005218 343 LEVALLLQ 350 (708)
Q Consensus 343 L~~~I~~~ 350 (708)
|+++|.+.
T Consensus 159 l~~~i~~~ 166 (170)
T 1z0j_A 159 LFIEISRR 166 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 105
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.81 E-value=5.2e-20 Score=176.65 Aligned_cols=157 Identities=18% Similarity=0.106 Sum_probs=99.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEec-CCeeEEEeeCCCcch--hhhhhhcccccccE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMS-TGASITFLDTPGHAA--FSAMRKRGAAVTDI 263 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~--f~~~~~~~~~~aDi 263 (708)
+.++|+++|++|+|||||+++|.+..+.. ....|++... ..+.++ ....+.+|||||++. +..+...+++.+|+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE--RTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEE--EEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeE--EEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 35789999999999999999999887654 3334444332 333442 235789999999987 55566677889999
Q ss_pred EEEEEEccCCCChhHHH-HHHHhhh----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 264 VVLVVAADDGVMPQTLE-AIAHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 264 vllVvDa~~g~~~q~~~-~l~~l~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
+++|+|+++....+... .+..+.. .++|+++|+||+|+.+...... ...... ...+ .++++++||++|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~-~~~~~~---~~~~--~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV-EEGRAC---AVVF--DCKFIETSATLQH 154 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH-HHHHHH---HHHH--TSEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCH-HHHHHH---HHHc--CCeEEEEecCCCC
Confidence 99999998743222222 2222332 3789999999999964321111 111110 0111 2589999999999
Q ss_pred CchhHHHHHHHHHH
Q 005218 339 GLDDLEVALLLQAE 352 (708)
Q Consensus 339 GI~~L~~~I~~~~~ 352 (708)
|+++|+++|.....
T Consensus 155 gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 155 NVAELFEGVVRQLR 168 (175)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988654
No 106
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.81 E-value=3.3e-20 Score=176.07 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=106.2
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.++|+++|++|+|||||+++|.+..+.....++++... ...+..+ ....+.||||||++.+..++..+++.+|++++|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 47899999999999999999998876555444444333 2333342 235899999999999999999999999999999
Q ss_pred EEccCCCChhHHH-HHHHh----hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMPQTLE-AIAHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~q~~~-~l~~l----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|+++....+... .+..+ ...++|+++|+||+|+.+..... ....... ...+ .++++++||++|.|+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS-VEEAKNR---ADQW--NVNYVETSAKTRANVDK 156 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSC-HHHHHHH---HHHH--TCEEEECCTTTCTTHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccC-HHHHHHH---HHHc--CCeEEEeCCCCCCCHHH
Confidence 9998743222221 11222 12478999999999996422111 1111111 0111 25899999999999999
Q ss_pred HHHHHHHHH
Q 005218 343 LEVALLLQA 351 (708)
Q Consensus 343 L~~~I~~~~ 351 (708)
++++|....
T Consensus 157 l~~~l~~~i 165 (168)
T 1u8z_A 157 VFFDLMREI 165 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 107
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.81 E-value=3.8e-20 Score=178.33 Aligned_cols=159 Identities=23% Similarity=0.265 Sum_probs=113.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
.+.++|+++|++|+|||||+|+|.+..+.....+++..++. ..+.. ++ ..+.||||||++.+..++..+++.+|++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 34579999999999999999999988766555555554443 44444 43 5789999999999998888899999999
Q ss_pred EEEEEccCCCChhH----HHHH-HHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 265 VLVVAADDGVMPQT----LEAI-AHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 265 llVvDa~~g~~~q~----~~~l-~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
++|+|+++...... ...+ ......++|+++|+||+|+....... ........ .. ..++++++||++|.|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~---~~--~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVP-RSEASAFG---AS--HHVAYFEASAKLRLN 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSC-HHHHHHHH---HH--TTCEEEECBTTTTBS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC-HHHHHHHH---HH--cCCeEEEecCCCCCC
Confidence 99999987322221 1111 22334588999999999995421100 11111110 11 135899999999999
Q ss_pred chhHHHHHHHHHHH
Q 005218 340 LDDLEVALLLQAEM 353 (708)
Q Consensus 340 I~~L~~~I~~~~~~ 353 (708)
+++++++|...+..
T Consensus 159 v~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 159 VDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 108
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.81 E-value=3.6e-20 Score=186.01 Aligned_cols=165 Identities=13% Similarity=0.107 Sum_probs=112.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|.+..+.....+++..++. ..+..+ ....+.||||||++.|..++..+++.+|++|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 45689999999999999999999998887666666655543 233332 4578999999999999999999999999999
Q ss_pred EEEEccCCCChhH-HHHH-HHhhh--cCCCEEEEEeCCCCCCCCcch-------hhhhhhhcccchhccCCcceEEEEee
Q 005218 266 LVVAADDGVMPQT-LEAI-AHANA--ANVPIVVAINKCDKPAADPER-------VKNQLGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 266 lVvDa~~g~~~q~-~~~l-~~l~~--~~~piIvViNK~Dl~~~~~~~-------~~~~l~~~~~~~~~~~~~~~vi~vSA 334 (708)
+|+|+++...... ...| ..+.. .++|+++|+||+|+....... ......+....+....+..+++++||
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 183 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEecc
Confidence 9999998543322 1222 22222 378999999999996420000 00000000001111111228999999
Q ss_pred ecCCC-chhHHHHHHHHHH
Q 005218 335 VKKTG-LDDLEVALLLQAE 352 (708)
Q Consensus 335 ktg~G-I~~L~~~I~~~~~ 352 (708)
++|.| ++++++.|...+.
T Consensus 184 ~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 184 FTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHh
Confidence 99998 9999999988764
No 109
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.81 E-value=2.9e-20 Score=180.18 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=109.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+++|.+..+.....+++...+ ...+... ....+.||||||++.+..++..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 457899999999999999999998776544444333222 2333331 33567799999999999988889999999999
Q ss_pred EEEccCCCChhHHH--HHHHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhh---------cccchhccCCcceEEEEe
Q 005218 267 VVAADDGVMPQTLE--AIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGA---------EGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 267 VvDa~~g~~~q~~~--~l~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~vi~vS 333 (708)
|+|++++...+... .+..+.. .++|+++|+||+|+.... ...+.+.. ....+....+..+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc--hhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99998743333322 2223332 289999999999996421 11111000 000111111224899999
Q ss_pred eecCCCchhHHHHHHHHH
Q 005218 334 AVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~~ 351 (708)
|++|.|+++|+++|...+
T Consensus 161 a~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHH
Confidence 999999999999998865
No 110
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.81 E-value=5.1e-20 Score=175.92 Aligned_cols=157 Identities=12% Similarity=0.087 Sum_probs=97.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhh-hhhcccccccEEEEE
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSA-MRKRGAAVTDIVVLV 267 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~-~~~~~~~~aDivllV 267 (708)
++|+++|++|+|||||+++|.+........+.+|.+.....+..+ ....+.+|||||++.+.. ++..+++.+|++++|
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 82 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIV 82 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEE
Confidence 589999999999999999999877665555555666665555552 246788999999998876 566678899999999
Q ss_pred EEccCCCChhHH-HHHHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~q~~-~~l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|+++....+.. ..+..+. ..++|+++|+||+|+.+..... ....... ...+ .++++++||++|.|+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 83 FSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS-LEEGRHL---AGTL--SCKHIETSAALHHNTRE 156 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC-HHHHHHH---HHHT--TCEEEECBTTTTBSHHH
T ss_pred EECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC-HHHHHHH---HHHc--CCcEEEecCccCCCHHH
Confidence 999873222111 1222222 2379999999999996321111 1111110 0111 35899999999999999
Q ss_pred HHHHHHHHHH
Q 005218 343 LEVALLLQAE 352 (708)
Q Consensus 343 L~~~I~~~~~ 352 (708)
++++|.+...
T Consensus 157 l~~~l~~~i~ 166 (169)
T 3q85_A 157 LFEGAVRQIR 166 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 111
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.81 E-value=2.4e-19 Score=174.88 Aligned_cols=155 Identities=20% Similarity=0.234 Sum_probs=110.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|||||||+++|.+..+.. ....|.+ ...+.+ ++..+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~----~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN----IKSVQS-QGFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE----EEEEEE-TTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE----EEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 356899999999999999999999876542 2222322 234455 6899999999999999988888999999999
Q ss_pred EEEEccCCCChhHH-HHHHHhh----hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 266 LVVAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 266 lVvDa~~g~~~q~~-~~l~~l~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
+|+|+++....+.. ..+..+. ..++|+++|+||+|+.+... +++.+.+. .... ....++++++||++|.|
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~Sa~~g~g 164 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN---LHTI-RDRVWQIQSCSALTGEG 164 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---GGGC-CSSCEEEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhC---chhc-cCCceEEEEccCCCCCC
Confidence 99999875433222 2222221 25789999999999975422 12222221 1100 11245899999999999
Q ss_pred chhHHHHHHHH
Q 005218 340 LDDLEVALLLQ 350 (708)
Q Consensus 340 I~~L~~~I~~~ 350 (708)
+++++++|...
T Consensus 165 i~~l~~~l~~~ 175 (181)
T 1fzq_A 165 VQDGMNWVCKN 175 (181)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.81 E-value=1.2e-19 Score=177.89 Aligned_cols=156 Identities=19% Similarity=0.297 Sum_probs=110.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc--ccccCceEEeeeEEEEEecCCeeEEEeeCCC----------cchhhhhhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV--AKEAGGITQHMGAFVVGMSTGASITFLDTPG----------HAAFSAMRK 255 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~--~~~~~gtT~di~~~~v~~~~g~~v~liDTpG----------~~~f~~~~~ 255 (708)
+.++|+++|++|+|||||+|+|++..+. ....+++|.+.....+ +..+.|||||| ++.+..++.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE----CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 5789999999999999999999988643 2555677776554433 23799999999 666666666
Q ss_pred cccccc---cEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEE
Q 005218 256 RGAAVT---DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVE 331 (708)
Q Consensus 256 ~~~~~a---DivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~ 331 (708)
.+++.+ |++++|+|++++........+..+...+.|+++|+||+|+..... ......+.+. +. .....++++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---~~-~~~~~~~~~ 173 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQT---LN-IDPEDELIL 173 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH---HT-CCTTSEEEE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHH---Hc-ccCCCceEE
Confidence 666555 999999999998888877777777778999999999999964321 1111122110 11 123468999
Q ss_pred EeeecCCCchhHHHHHHHHH
Q 005218 332 VSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~~~~ 351 (708)
+||++|.|+++|+++|.+.+
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EEccCCCCHHHHHHHHHHHh
Confidence 99999999999999998754
No 113
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=8.4e-20 Score=178.56 Aligned_cols=158 Identities=17% Similarity=0.167 Sum_probs=114.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+++|.+..+.....++++.++....+.+. .+..+.||||||++.+..++..+++.+|++|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 45799999999999999999999888766555655555544444442 34789999999999999988889999999999
Q ss_pred EEEccCCCChhHHHH-HHHhhh----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 267 VVAADDGVMPQTLEA-IAHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 267 VvDa~~g~~~q~~~~-l~~l~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|+|+++....+.... +..+.. .++|+++|+||+|+...... .+..... ...+ .++++++||++|.|++
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD--RNEGLKF---ARKH--SMLFIEASAKTCDGVQ 166 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSC--HHHHHHH---HHHT--TCEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccC--HHHHHHH---HHHc--CCEEEEecCCCCCCHH
Confidence 999987433222222 233332 46899999999999532211 1111111 0111 2579999999999999
Q ss_pred hHHHHHHHHHH
Q 005218 342 DLEVALLLQAE 352 (708)
Q Consensus 342 ~L~~~I~~~~~ 352 (708)
+++++|.+.+.
T Consensus 167 ~l~~~l~~~~~ 177 (195)
T 1x3s_A 167 CAFEELVEKII 177 (195)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 114
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.81 E-value=6.7e-20 Score=179.35 Aligned_cols=158 Identities=14% Similarity=0.102 Sum_probs=111.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
..++|+++|++|+|||||+++|.+..+.....++++.++....+... .+..+.||||||++.+..++..+++.+|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 45799999999999999999999888765544444444433344432 35689999999999999999999999999999
Q ss_pred EEEccCCCChhHH-HHHHHhhh---cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 267 VVAADDGVMPQTL-EAIAHANA---ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 267 VvDa~~g~~~q~~-~~l~~l~~---~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+|+++....+.. ..+..+.. .++|+++|+||+|+....... .+..... ...+ .++++++||++|.|+++
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVP-AEDGRRL---ADDL--GFEFFEASAKENINVKQ 174 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC-HHHHHHH---HHHH--TCEEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCC-HHHHHHH---HHHc--CCeEEEEECCCCCCHHH
Confidence 9999874322222 22223322 478999999999995421100 1111111 0111 24899999999999999
Q ss_pred HHHHHHHHH
Q 005218 343 LEVALLLQA 351 (708)
Q Consensus 343 L~~~I~~~~ 351 (708)
|+++|...+
T Consensus 175 l~~~l~~~i 183 (189)
T 2gf9_A 175 VFERLVDVI 183 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 115
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=7.4e-20 Score=182.68 Aligned_cols=161 Identities=26% Similarity=0.308 Sum_probs=106.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC--CeeEEEeeCCCcchhhh-hhhcccccccE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST--GASITFLDTPGHAAFSA-MRKRGAAVTDI 263 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~--g~~v~liDTpG~~~f~~-~~~~~~~~aDi 263 (708)
.+.++|+++|++|+|||||+++|++..+.... ++++.+... +.+++ +..+.||||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccc-CCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 35689999999999999999999988765443 344444433 44422 68899999999999987 77788999999
Q ss_pred EEEEEEccCCC--ChhHHHHHHHh------hhcCCCEEEEEeCCCCCCCCc-chhhhhhhhc------------------
Q 005218 264 VVLVVAADDGV--MPQTLEAIAHA------NAANVPIVVAINKCDKPAADP-ERVKNQLGAE------------------ 316 (708)
Q Consensus 264 vllVvDa~~g~--~~q~~~~l~~l------~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~------------------ 316 (708)
+++|+|+++.. .....+.|..+ ...++|+++|+||+|+..... +...+.+...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999998611 11122222221 134689999999999975432 1111111100
Q ss_pred ----------c--cchhccCCcceEEEEeeecC------CCchhHHHHHHHH
Q 005218 317 ----------G--LELEDWGGKVQVVEVSAVKK------TGLDDLEVALLLQ 350 (708)
Q Consensus 317 ----------~--~~~~~~~~~~~vi~vSAktg------~GI~~L~~~I~~~ 350 (708)
+ +....+...++++++||++| .|+++++++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 00011112578999999999 9999999999764
No 116
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=3.5e-20 Score=206.53 Aligned_cols=151 Identities=19% Similarity=0.297 Sum_probs=109.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcc--------hhhhhhhccccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHA--------AFSAMRKRGAAV 260 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~--------~f~~~~~~~~~~ 260 (708)
++|+|+|+||||||||+|+|++...+. ...+|+|+|.....+.+ ++..+.+|||||++ .+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTT-CSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEE-CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 789999999999999999999887764 77899999988887777 78899999999985 455666678899
Q ss_pred ccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 261 aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
||++|+|+|+.++....+.+....+...++|+++|+||+|+..... .. ..+.. . +..+++++||++|.|+
T Consensus 83 ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~-~~-~~~~~-------l-g~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA-NI-YDFYS-------L-GFGEPYPISGTHGLGL 152 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC------CC-CSSGG-------G-SSCCCEECBTTTTBTH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh-hH-HHHHH-------c-CCCCeEEEeCcCCCCh
Confidence 9999999999999988888877878888999999999999964211 11 11111 1 1126799999999999
Q ss_pred hhHHHHHHHHH
Q 005218 341 DDLEVALLLQA 351 (708)
Q Consensus 341 ~~L~~~I~~~~ 351 (708)
++|+++|....
T Consensus 153 ~~L~~~i~~~l 163 (436)
T 2hjg_A 153 GDLLDAVAEHF 163 (436)
T ss_dssp HHHHHHHHHTG
T ss_pred HHHHHHHHHhc
Confidence 99999998754
No 117
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.81 E-value=2.7e-20 Score=184.58 Aligned_cols=162 Identities=18% Similarity=0.246 Sum_probs=113.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
...++|+++|++|+|||||+++|.+..+.....++++.++... +..+ ....+.||||||++.+..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE-EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE-EEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 4557999999999999999999999887766666666655432 3442 2358999999999999999999999999999
Q ss_pred EEEEccCCCChhHH--HHHHHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhh---------cccchhccCCcceEEEE
Q 005218 266 LVVAADDGVMPQTL--EAIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGA---------EGLELEDWGGKVQVVEV 332 (708)
Q Consensus 266 lVvDa~~g~~~q~~--~~l~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~vi~v 332 (708)
+|+|+++....+.. ..+..+.. .++|+++|+||+|+.... ...+.+.. ....+....+..+++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE--HTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCH--HHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCc--cchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 99999874222222 12222222 389999999999996431 11111100 00111111122379999
Q ss_pred eeecCCCchhHHHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~~~ 351 (708)
||++|.|+++|+++|.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 118
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.81 E-value=4.2e-20 Score=182.98 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=113.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
..+.++|+++|++|+|||||+|+|.+..+.....++++..+ ...+... .+..+.||||||++.+..++..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34678999999999999999999999888765555555444 3333331 567899999999999999999999999999
Q ss_pred EEEEEccCCCChhHHHH-HHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 265 VLVVAADDGVMPQTLEA-IAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 265 llVvDa~~g~~~q~~~~-l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
++|+|+++....+.... +..+. ..++|+++|+||+|+........ ...... ...+ .++++++||++|.|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~-~~~~~~---~~~~--~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQA-VEGKKL---AESW--GATFMESSARENQL 173 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCH-HHHHHH---HHHH--TCEEEECCTTCHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCH-HHHHHH---HHHh--CCeEEEEeCCCCCC
Confidence 99999987432222222 22222 23789999999999963221110 111110 0111 24899999999999
Q ss_pred chhHHHHHHHHHHHc
Q 005218 340 LDDLEVALLLQAEMM 354 (708)
Q Consensus 340 I~~L~~~I~~~~~~~ 354 (708)
+++++++|...+...
T Consensus 174 v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 174 TQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999876544
No 119
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.1e-19 Score=178.42 Aligned_cols=157 Identities=20% Similarity=0.300 Sum_probs=109.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+|+|.+..+.....+++...+.. .+... ....+.||||||++.+..++..++..+|++++
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQ-VISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEE-EEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeE-EEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 45799999999999999999999877755444443332222 22221 34689999999999999888889999999999
Q ss_pred EEEccCCCCh----hHHHHHHHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMP----QTLEAIAHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~----q~~~~l~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++.... .+...+..+. ..++|+++|+||+|+....... ...... ...+ .++++++||++|.|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~---~~~~--~~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDT--REAQAV---AQEW--KCAFMETSAKMNYNV 158 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCH--HHHHHH---HHHH--TCEEEECBTTTTBSH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCH--HHHHHH---HHHh--CCeEEEEecCCCCCH
Confidence 9999873221 2222233322 1478999999999996422111 111111 0111 248999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++|+++|...+.
T Consensus 159 ~~l~~~l~~~~~ 170 (199)
T 2gf0_A 159 KELFQELLTLET 170 (199)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 120
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.81 E-value=5.5e-20 Score=183.02 Aligned_cols=161 Identities=18% Similarity=0.201 Sum_probs=110.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|.+..+.....+.+ .+.....+..+ ....+.||||||++.|..++..+++.+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCS-EEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCee-cceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 456899999999999999999999877765544444 34444444441 3355669999999999999999999999999
Q ss_pred EEEEccCCCChhHHH--HHHHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhh---------cccchhccCCcceEEEE
Q 005218 266 LVVAADDGVMPQTLE--AIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGA---------EGLELEDWGGKVQVVEV 332 (708)
Q Consensus 266 lVvDa~~g~~~q~~~--~l~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~vi~v 332 (708)
+|+|+++....+... .+..+.. .++|+++|+||+|+.... ...+.+.+ ....+....+..+++++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccch--hhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 999999754333322 2223332 389999999999996432 11111100 01111111233579999
Q ss_pred eeecCCCchhHHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~~ 350 (708)
||++|.|+++++++|.+.
T Consensus 185 SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp CTTTCTTHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999998763
No 121
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=8.9e-20 Score=179.07 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=110.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+++|.+..+.....+++...+ ...+..+ ....+.||||||++.|..++..+++.+|++++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 447999999999999999999998876554444443333 3344442 23789999999999999999999999999999
Q ss_pred EEEccCCCChhHH--HHHHHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhh---------hcccchhccCCcceEEEEe
Q 005218 267 VVAADDGVMPQTL--EAIAHANA--ANVPIVVAINKCDKPAADPERVKNQLG---------AEGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 267 VvDa~~g~~~q~~--~~l~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~---------~~~~~~~~~~~~~~vi~vS 333 (708)
|+|+++....+.. ..+..+.. .++|+++|+||+|+.... .....+. +....+....+..+++++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP--KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH--HHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc--cchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 9999874322222 12233332 289999999999996531 1000000 0000011101123799999
Q ss_pred eecCCCchhHHHHHHHHH
Q 005218 334 AVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~~ 351 (708)
|++|.|+++++++|...+
T Consensus 174 a~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998754
No 122
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.81 E-value=5.9e-20 Score=184.69 Aligned_cols=157 Identities=15% Similarity=0.144 Sum_probs=113.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc--cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA--KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~--~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
.+.++|+++|++|+|||||+++|+...+.. ....|+|.......+.. .+..+.||||||++.+..++..+++.+|++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 355799999999999999999977655433 44556676655554433 567899999999999999888899999999
Q ss_pred EEEEEccCCCChhHHHHH-HHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 265 VLVVAADDGVMPQTLEAI-AHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 265 llVvDa~~g~~~q~~~~l-~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
++|+|+++....+....| ..+.. .++|+++|+||+|+.+.........+ .... .++++++||++|.|++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~------~~~~--~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVF------HRKK--NLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCH------HHHH--TCEEEECBGGGTBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHH------HHHc--CCEEEEEeCCCCCCHH
Confidence 999999984333332222 22221 38899999999999653321111111 0111 3589999999999999
Q ss_pred hHHHHHHHHHH
Q 005218 342 DLEVALLLQAE 352 (708)
Q Consensus 342 ~L~~~I~~~~~ 352 (708)
+++++|...+.
T Consensus 164 ~l~~~l~~~l~ 174 (221)
T 3gj0_A 164 KPFLWLARKLI 174 (221)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 123
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.80 E-value=2.3e-20 Score=180.54 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=101.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|.+..+.....+++...+. ..+... ....+.||||||++.+..++..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 35689999999999999999999987765444443332222 112221 3456779999999999999999999999999
Q ss_pred EEEEccCCCChhHHH--HHHHhhh--cCCCEEEEEeCCCCCCCCcch---------hhhhhhhcccchhccCCcceEEEE
Q 005218 266 LVVAADDGVMPQTLE--AIAHANA--ANVPIVVAINKCDKPAADPER---------VKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 266 lVvDa~~g~~~q~~~--~l~~l~~--~~~piIvViNK~Dl~~~~~~~---------~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
+|+|+++....+... .+..+.. .++|+++|+||+|+.+..... ...+.. .+....+..+++++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE----ELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH----HHHHHHTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH----HHHHHcCCCEEEEE
Confidence 999998743322221 2222222 378999999999995421100 001111 11111122489999
Q ss_pred eeecCCCchhHHHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~~~ 351 (708)
||++|.|+++++++|.+.+
T Consensus 161 Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998753
No 124
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=5.1e-20 Score=181.03 Aligned_cols=158 Identities=20% Similarity=0.174 Sum_probs=111.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccccc--ccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAK--EAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~--~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
.+.++|+++|++|+|||||+|+|.+..+... ...+++.......+.. .+..+.||||||++.+..++..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 4568999999999999999999998876543 3334444333333222 567899999999999999998999999999
Q ss_pred EEEEEccCCCChhHHHH-HHHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 265 VLVVAADDGVMPQTLEA-IAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 265 llVvDa~~g~~~q~~~~-l~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
++|+|+++....+.... +..+. ..++|+++|+||+|+.+..... .++.... ...+ .++++++||++|.|+
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP-LKDAKEY---AESI--GAIVVETSAKNAINI 173 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC-HHHHHHH---HHTT--TCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC-HHHHHHH---HHHc--CCEEEEEeCCCCcCH
Confidence 99999987543332222 22222 2478999999999995321110 1111111 1111 358999999999999
Q ss_pred hhHHHHHHHHH
Q 005218 341 DDLEVALLLQA 351 (708)
Q Consensus 341 ~~L~~~I~~~~ 351 (708)
++|+++|...+
T Consensus 174 ~~l~~~l~~~i 184 (192)
T 2fg5_A 174 EELFQGISRQI 184 (192)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99999998743
No 125
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.80 E-value=7.5e-20 Score=183.03 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=115.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC-----------CeeEEEeeCCCcchhhhhhh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-----------GASITFLDTPGHAAFSAMRK 255 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~-----------g~~v~liDTpG~~~f~~~~~ 255 (708)
.+.++|+++|++|+|||||+++|++..+.....++++.++....+.+.+ ...+.||||||++.|...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 3457999999999999999999998887655556666665555554432 57899999999999999988
Q ss_pred cccccccEEEEEEEccCCCChhHHHHH-HHhhh----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEE
Q 005218 256 RGAAVTDIVVLVVAADDGVMPQTLEAI-AHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVV 330 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~q~~~~l-~~l~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi 330 (708)
.+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+....... ....... ...+ .++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~ 176 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN-ERQAREL---ADKY--GIPYF 176 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC-HHHHHHH---HHHT--TCCEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC-HHHHHHH---HHHC--CCcEE
Confidence 999999999999999874333333222 22221 578999999999995421100 1111111 0111 25899
Q ss_pred EEeeecCCCchhHHHHHHHHHH
Q 005218 331 EVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 331 ~vSAktg~GI~~L~~~I~~~~~ 352 (708)
++||++|.|+++|+++|...+.
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 126
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=4.2e-20 Score=176.30 Aligned_cols=156 Identities=20% Similarity=0.261 Sum_probs=106.4
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
.++|+++|++|+|||||+|+|.+..+.....+++...+.. .+... ....+.||||||++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4789999999999999999999877654444433322222 22221 346799999999999998888899999999999
Q ss_pred EEccCCCChhH-HHHHHHhhh-----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGVMPQT-LEAIAHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~~~q~-~~~l~~l~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+++....+. ...+..+.. .++|+++|+||+|+....... ....... ...+ .++++++||++|.|++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQ-SSEAEAL---ARTW--KCAFMETSAKLNHNVK 155 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSC-HHHHHHH---HHHH--TCEEEECBTTTTBSHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccC-HHHHHHH---HHHh--CCeEEEecCCCCcCHH
Confidence 99987422211 122222222 478999999999995422110 0111110 0111 2589999999999999
Q ss_pred hHHHHHHHHH
Q 005218 342 DLEVALLLQA 351 (708)
Q Consensus 342 ~L~~~I~~~~ 351 (708)
+++++|.+..
T Consensus 156 ~l~~~l~~~~ 165 (172)
T 2erx_A 156 ELFQELLNLE 165 (172)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 9999998743
No 127
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5e-20 Score=185.80 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=109.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
...++|+++|++|+|||||+++|.+..+.....++++.++....+.+ ++ ..+.||||||++.|..++..+++.+|++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 34579999999999999999999998887666666666665555655 44 6899999999999999999999999999
Q ss_pred EEEEEccCCCChhHHHH-HHHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 265 VLVVAADDGVMPQTLEA-IAHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 265 llVvDa~~g~~~q~~~~-l~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+|+++....+.... +..+. ..++|+++|+||+|+....... ....... ...+ .++++++||++|.|+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP-TEESKTF---AQEN--QLLFTETSALNSENV 163 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSC-HHHHHHH---HHHT--TCEEEECCCC-CCCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC-HHHHHHH---HHHc--CCEEEEEeCCCCCCH
Confidence 99999987443332222 22222 3478999999999996421100 0111111 0111 358999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++++++|...+.
T Consensus 164 ~~l~~~l~~~i~ 175 (223)
T 3cpj_B 164 DKAFEELINTIY 175 (223)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 128
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.80 E-value=4.6e-20 Score=191.43 Aligned_cols=154 Identities=23% Similarity=0.295 Sum_probs=118.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh------hhccc--c
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM------RKRGA--A 259 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~------~~~~~--~ 259 (708)
+.++|+++|+||+|||||+|+|++..+..+..+|+|.+.....+.. .+..+.||||||+..+... ...++ .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 3578999999999999999999998888888899999888777777 7899999999998877542 23333 5
Q ss_pred cccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchh-hhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 260 ~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
.+|++++|+|+++. ......+..+...++|+++|+||+|+........ ...+.. .+ .+|++++||++|.
T Consensus 83 ~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~------~l--g~~vi~~SA~~g~ 152 (258)
T 3a1s_A 83 DADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQK------HL--GIPVVFTSSVTGE 152 (258)
T ss_dssp CCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHH------HH--CSCEEECCTTTCT
T ss_pred CCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHH------Hc--CCCEEEEEeeCCc
Confidence 89999999999873 4445566667778999999999999843111000 111111 11 2589999999999
Q ss_pred CchhHHHHHHHHHH
Q 005218 339 GLDDLEVALLLQAE 352 (708)
Q Consensus 339 GI~~L~~~I~~~~~ 352 (708)
|+++|+++|...+.
T Consensus 153 gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 153 GLEELKEKIVEYAQ 166 (258)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988654
No 129
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.1e-20 Score=182.27 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=111.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
...++|+++|++|+|||||+++|.+..+.....++++.++....+... .+..+.||||||++.+..++..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 356899999999999999999999877654433333323333333322 5688999999999999999999999999999
Q ss_pred EEEEccCCCCh----hHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 266 LVVAADDGVMP----QTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 266 lVvDa~~g~~~----q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+|+++.... .+...+......++|+++|+||+|+....... ....... ...+ .++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVP-TEKGQLL---AEQL--GFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC-HHHHHHH---HHHH--TCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC-HHHHHHH---HHHc--CCeEEEEECCCCCCHH
Confidence 99999873222 22222222223578999999999995321111 1111110 0111 2489999999999999
Q ss_pred hHHHHHHHHHH
Q 005218 342 DLEVALLLQAE 352 (708)
Q Consensus 342 ~L~~~I~~~~~ 352 (708)
+++++|.+.+.
T Consensus 175 ~l~~~l~~~i~ 185 (191)
T 3dz8_A 175 QAFERLVDAIC 185 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 130
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.80 E-value=9.3e-20 Score=179.96 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=105.2
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhccccccc
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTD 262 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aD 262 (708)
...+.++|+++|++|+|||||+++|.+..+.....+++. +.....+.. ++ ..+.||||||++.|..++..++..+|
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSS-EEEEEEEEE-TTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-ceeEEEEEE-CCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 445678999999999999999999998776544444443 333334444 44 56779999999999998888999999
Q ss_pred EEEEEEEccCCCChhHHH--HHHHhhh--cCCCEEEEEeCCCCCCCCcc--hh----hhhh-hhcccchhccCCcceEEE
Q 005218 263 IVVLVVAADDGVMPQTLE--AIAHANA--ANVPIVVAINKCDKPAADPE--RV----KNQL-GAEGLELEDWGGKVQVVE 331 (708)
Q Consensus 263 ivllVvDa~~g~~~q~~~--~l~~l~~--~~~piIvViNK~Dl~~~~~~--~~----~~~l-~~~~~~~~~~~~~~~vi~ 331 (708)
++++|+|+++....+... .+..+.. .++|+++|+||+|+...... .+ .... .+....+....+..++++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 999999998743322221 2222222 38999999999999642100 00 0000 000001111112248999
Q ss_pred EeeecCCCchhHHHHHHHHHH
Q 005218 332 VSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~~~~~ 352 (708)
+||++|.|+++++++|...+.
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987654
No 131
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=179.26 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=111.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|.+..+.....++++..+ ...+.++ ....+.||||||++.+..++..+++.+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 3457999999999999999999998876555444444333 3334442 2358999999999999999989999999999
Q ss_pred EEEEccCCCChhHHHH-HHHh----hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 266 LVVAADDGVMPQTLEA-IAHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 266 lVvDa~~g~~~q~~~~-l~~l----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
+|+|+++......... +..+ ...++|+++|+||+|+.+..... ....... ...+ .++++++||++|.|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS-VEEAKNR---AEQW--NVNYVETSAKTRANV 164 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC-HHHHHHH---HHHH--TCEEEEECTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc-HHHHHHH---HHHh--CCeEEEEeCCCCCCH
Confidence 9999987432222211 1122 22478999999999996422111 1111111 0111 248999999999999
Q ss_pred hhHHHHHHHHHHH
Q 005218 341 DDLEVALLLQAEM 353 (708)
Q Consensus 341 ~~L~~~I~~~~~~ 353 (708)
++|+++|...+..
T Consensus 165 ~~l~~~l~~~i~~ 177 (206)
T 2bov_A 165 DKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876643
No 132
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=1.9e-20 Score=195.97 Aligned_cols=152 Identities=19% Similarity=0.291 Sum_probs=116.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh----------hhcc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM----------RKRG 257 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~----------~~~~ 257 (708)
+.++|+++|++|+|||||+|+|++.....+..+|+|.+.....+.. .+..+.||||||+..+... ...+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 3578999999999999999999999887788899999988888877 7889999999998877621 1122
Q ss_pred --cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEee
Q 005218 258 --AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 258 --~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSA 334 (708)
...+|++++|+|+++ .......+..+...++|+++|+||+|+..... ......+.. .+ .+|++++||
T Consensus 81 ~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~------~l--g~~~i~~SA 150 (274)
T 3i8s_A 81 ILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSA------RL--GCPVIPLVS 150 (274)
T ss_dssp HHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHH------HH--TSCEEECCC
T ss_pred HhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHH------hc--CCCEEEEEc
Confidence 268999999999987 34555566667777999999999999853211 001111111 11 258999999
Q ss_pred ecCCCchhHHHHHHHH
Q 005218 335 VKKTGLDDLEVALLLQ 350 (708)
Q Consensus 335 ktg~GI~~L~~~I~~~ 350 (708)
++|.|+++|+++|...
T Consensus 151 ~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 151 TRGRGIEALKLAIDRY 166 (274)
T ss_dssp GGGHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988763
No 133
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.80 E-value=8.1e-20 Score=176.97 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=110.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+++|.+..+.....+.++..+ ...+... ....+.||||||++.+..++..+++.+|++++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 457999999999999999999998877555444444333 3333442 23589999999999999999999999999999
Q ss_pred EEEccCCCChhHH----HHHHH-hhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 267 VVAADDGVMPQTL----EAIAH-ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 267 VvDa~~g~~~q~~----~~l~~-l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|+|+++....+.. ..+.. ....++|+++|+||+|+.+..... ..+.... ...+ .++++++||++|.|++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS-VEEAKNR---AEQW--NVNYVETSAKTRANVD 169 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC-HHHHHHH---HHHT--TCEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC-HHHHHHH---HHHc--CCeEEEeCCCCCCCHH
Confidence 9999874322221 11211 222478999999999995421111 1111111 1111 2589999999999999
Q ss_pred hHHHHHHHHHH
Q 005218 342 DLEVALLLQAE 352 (708)
Q Consensus 342 ~L~~~I~~~~~ 352 (708)
+++++|...+.
T Consensus 170 ~l~~~l~~~i~ 180 (187)
T 2a9k_A 170 KVFFDLMREIR 180 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 134
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.80 E-value=1.7e-19 Score=170.57 Aligned_cols=155 Identities=23% Similarity=0.259 Sum_probs=108.0
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
..+|+++|++|+|||||+++|.+..+.....+.++... ...+... ....+.+|||||++.+..++..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 36899999999999999999998776554444443332 2333332 345689999999999998888899999999999
Q ss_pred EEccCCCChhHH-HHHHHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 268 VAADDGVMPQTL-EAIAHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 268 vDa~~g~~~q~~-~~l~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
+|+++....+.. ..+..+. ..++|+++|+||+|+...... ........ ..+ .++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~---~~~--~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVE--SRQAQDLA---RSY--GIPYIETSAKTRQGVED 154 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSC--HHHHHHHH---HHH--TCCEEEECTTTCTTHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccC--HHHHHHHH---HHc--CCeEEEecCCCCCCHHH
Confidence 999874322221 1222222 237999999999999652211 11111110 111 24899999999999999
Q ss_pred HHHHHHHHH
Q 005218 343 LEVALLLQA 351 (708)
Q Consensus 343 L~~~I~~~~ 351 (708)
++++|...+
T Consensus 155 l~~~l~~~~ 163 (166)
T 2ce2_X 155 AFYTLVREI 163 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 135
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=7.3e-20 Score=178.38 Aligned_cols=155 Identities=21% Similarity=0.294 Sum_probs=116.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh------hhhhcccc--
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS------AMRKRGAA-- 259 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~------~~~~~~~~-- 259 (708)
+.++|+++|++|||||||+++|.+..+.....+++|.+.....+.. ++..+.+|||||++.+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe-CCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 4579999999999999999999988777777888888877777777 78999999999998774 23344443
Q ss_pred cccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCC-cchhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD-PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 260 ~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~-~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
.+|++++|+|+++ .......+..+...+.|+++|+||+|+.... .......+. ..+ ..+++++||++|.
T Consensus 85 ~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 85 KPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE------KIL--GVKVVPLSAAKKM 154 (188)
T ss_dssp CCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHH------HHH--TSCEEECBGGGTB
T ss_pred CCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHH------HHh--CCCeEEEEecCCC
Confidence 4999999999986 2334445555666789999999999984311 000111111 111 2489999999999
Q ss_pred CchhHHHHHHHHHHH
Q 005218 339 GLDDLEVALLLQAEM 353 (708)
Q Consensus 339 GI~~L~~~I~~~~~~ 353 (708)
|+++|+++|......
T Consensus 155 ~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 155 GIEELKKAISIAVKD 169 (188)
T ss_dssp SHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999887643
No 136
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.80 E-value=5.1e-20 Score=183.55 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=109.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+++|.+..+.....+++..++ ...+..+ ....+.||||||++.|..++..+++.+|++|+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 457999999999999999999998877554444443222 3334442 33689999999999999999899999999999
Q ss_pred EEEccCCCChhHH--HHHHHhhh--cCCCEEEEEeCCCCCCCCcc------h-hhhhhhhcccchhccCCcceEEEEeee
Q 005218 267 VVAADDGVMPQTL--EAIAHANA--ANVPIVVAINKCDKPAADPE------R-VKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 267 VvDa~~g~~~q~~--~~l~~l~~--~~~piIvViNK~Dl~~~~~~------~-~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
|+|+++....+.. ..+..+.. .++|+++|+||+|+...... . ........ ...+ +..+++++||+
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~---~~~~-~~~~~~~~Sa~ 162 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL---RKQI-GAAAYIECSSK 162 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH---HHHH-TCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH---HHHc-CCceEEEccCC
Confidence 9999874322222 12222222 37999999999999542110 0 00111110 0111 12489999999
Q ss_pred cCCCchhHHHHHHHHHH
Q 005218 336 KKTGLDDLEVALLLQAE 352 (708)
Q Consensus 336 tg~GI~~L~~~I~~~~~ 352 (708)
+|.|+++++++|...+.
T Consensus 163 ~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 163 TQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988764
No 137
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.80 E-value=1.1e-19 Score=177.75 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=111.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC-CeeEEEeeCCCcchhh-hhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST-GASITFLDTPGHAAFS-AMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~-g~~v~liDTpG~~~f~-~~~~~~~~~aDiv 264 (708)
.+.++|+++|++|+|||||+++|.+..+.....++++.++....+.+++ ...+.||||||++.+. .++..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 3568999999999999999999998887766666666666555565522 3689999999999998 7788889999999
Q ss_pred EEEEEccCCCCh----hHHHHHHH-hhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecC--
Q 005218 265 VLVVAADDGVMP----QTLEAIAH-ANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKK-- 337 (708)
Q Consensus 265 llVvDa~~g~~~----q~~~~l~~-l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg-- 337 (708)
|+|+|+++.... .+...+.. +...++|+++|+||+|+.+..... ........ ..+ .++++++||++|
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~---~~~--~~~~~~~Sa~~~~~ 171 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP-TDLAQKFA---DTH--SMPLFETSAKNPND 171 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSC-HHHHHHHH---HHT--TCCEEECCSSSGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeC-HHHHHHHH---HHc--CCEEEEEeCCcCCc
Confidence 999999873222 22222222 224578999999999995421100 01111100 111 258999999999
Q ss_pred -CCchhHHHHHHHHH
Q 005218 338 -TGLDDLEVALLLQA 351 (708)
Q Consensus 338 -~GI~~L~~~I~~~~ 351 (708)
.|+++++++|...+
T Consensus 172 ~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 172 NDHVEAIFMTLAHKL 186 (189)
T ss_dssp GSCHHHHHHHHC---
T ss_pred ccCHHHHHHHHHHHH
Confidence 99999999887643
No 138
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.80 E-value=8.5e-20 Score=180.39 Aligned_cols=159 Identities=15% Similarity=0.097 Sum_probs=80.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC--cccccccCceEEeeeEEEEEecC---CeeEEEeeCCCcchhhhhhhccccccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT--SLVAKEAGGITQHMGAFVVGMST---GASITFLDTPGHAAFSAMRKRGAAVTD 262 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~--~~~~~~~~gtT~di~~~~v~~~~---g~~v~liDTpG~~~f~~~~~~~~~~aD 262 (708)
+.++|+++|++|+|||||+++|.+. .+.....+++..++....+.+++ ...+.||||||++.+..++..+++.+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 4579999999999999999999988 55444445554566666666633 568999999999999999999999999
Q ss_pred EEEEEEEccCCCChhHHH-HHHHhhh------cCCCEEEEEeCCCCCC-CCcchhhhhhhhcccchhccCCcceEEEEee
Q 005218 263 IVVLVVAADDGVMPQTLE-AIAHANA------ANVPIVVAINKCDKPA-ADPERVKNQLGAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 263 ivllVvDa~~g~~~q~~~-~l~~l~~------~~~piIvViNK~Dl~~-~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSA 334 (708)
++++|+|++++...+... .+..+.. .++|+++|+||+|+.. ..... .+..... ...+ .++++++||
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~-~~~~~~~---~~~~--~~~~~~~Sa 172 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR-LDMAQDW---ATTN--TLDFFDVSA 172 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC-HHHHHHH---HHHT--TCEEEECCC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC-HHHHHHH---HHHc--CCEEEEecc
Confidence 999999998743322222 2222222 5789999999999964 21100 1111111 1111 258999999
Q ss_pred ec-CCCchhHHHHHHHHHH
Q 005218 335 VK-KTGLDDLEVALLLQAE 352 (708)
Q Consensus 335 kt-g~GI~~L~~~I~~~~~ 352 (708)
++ |.|+++++++|...+.
T Consensus 173 ~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp -------CHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 99 9999999999987543
No 139
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.79 E-value=2.1e-19 Score=175.59 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=100.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+++|.+..+.....+.++..+ ...+... ....+.||||||++.+..++..+++.+|++++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 447999999999999999999998776554444443333 3334442 23569999999999999998999999999999
Q ss_pred EEEccCCCChhHHHHH-HHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 267 VVAADDGVMPQTLEAI-AHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l-~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
|+|+++....+....| ..+. ..++|+++|+||+|+...... ........ ..+ .++++++||++|.|++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~---~~~--~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVD--TKQAHELA---KSY--GIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSC--HHHHHHHH---HHH--TCCEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCC--HHHHHHHH---HHc--CCeEEEEeCCCCCCHH
Confidence 9999874332222222 2222 247899999999999652111 11111110 111 2479999999999999
Q ss_pred hHHHHHHHHHHH
Q 005218 342 DLEVALLLQAEM 353 (708)
Q Consensus 342 ~L~~~I~~~~~~ 353 (708)
+++++|...+..
T Consensus 172 ~l~~~l~~~~~~ 183 (190)
T 3con_A 172 DAFYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999886643
No 140
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.79 E-value=8e-20 Score=183.22 Aligned_cols=163 Identities=19% Similarity=0.181 Sum_probs=93.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|.+..+.....++++..+ ...+..+ ....+.||||||++.|..++..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3568999999999999999999998877655555444333 2333442 2357999999999999999999999999999
Q ss_pred EEEEccCCCChhHHH--HHHHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhh---------hcccchhccCCcceEEEE
Q 005218 266 LVVAADDGVMPQTLE--AIAHAN--AANVPIVVAINKCDKPAADPERVKNQLG---------AEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 266 lVvDa~~g~~~q~~~--~l~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~---------~~~~~~~~~~~~~~vi~v 332 (708)
+|+|+++....+... .+..+. ..++|+++|+||+|+.... ...+.+. +....+....+..+++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDK--SLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCH--HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccc--hhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 999998743222221 122222 2478999999999996431 1111000 000111111122489999
Q ss_pred eeecCCCchhHHHHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~~~~ 352 (708)
||++|.|+++++++|...+.
T Consensus 189 SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988654
No 141
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=7.9e-20 Score=182.03 Aligned_cols=161 Identities=19% Similarity=0.267 Sum_probs=107.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
..++|+++|++|+|||||+++|.+..+.....++++.++.. .+..+ ....+.||||||++.+..++..+++.+|++++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 34699999999999999999999888766555555444432 23442 23689999999999999998899999999999
Q ss_pred EEEccCCCChhHH--HHHHHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhh---------cccchhccCCcceEEEEe
Q 005218 267 VVAADDGVMPQTL--EAIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGA---------EGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 267 VvDa~~g~~~q~~--~~l~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~vi~vS 333 (708)
|+|+++....+.. ..+..+.. .++|+++|+||+|+.... ...+.+.. ....+....+..+++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 9999874222222 12222322 389999999999996421 11111110 000111111223799999
Q ss_pred eecCCCchhHHHHHHHHH
Q 005218 334 AVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~~ 351 (708)
|++|.|+++|+++|...+
T Consensus 181 A~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAA 198 (207)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998865
No 142
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=178.42 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=110.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhh-hhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSA-MRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~-~~~~~~~~aDivl 265 (708)
..++|+++|.+|||||||+++|.+........++++.+.....+.++ ....+.+|||||++.+.. ++..+++.+|++|
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 45799999999999999999998665554555666666555555552 235778999999988765 6667789999999
Q ss_pred EEEEccCCCChhHH-HHHHHhhh----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 266 LVVAADDGVMPQTL-EAIAHANA----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 266 lVvDa~~g~~~q~~-~~l~~l~~----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
+|+|+++....+.. ..+..+.. .++|+++|+||+|+........ +..... ...+ .++++++||++|.|+
T Consensus 102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~-~~~~~~---a~~~--~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL-EEGRHL---AGTL--SCKHIETSAALHHNT 175 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCH-HHHHHH---HHHT--TCEEEEEBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCH-HHHHHH---HHHh--CCEEEEEcCCCCCCH
Confidence 99999873222212 12222221 4789999999999964221111 111110 0111 258999999999999
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
+++++.|...+.
T Consensus 176 ~~lf~~l~~~i~ 187 (195)
T 3cbq_A 176 RELFEGAVRQIR 187 (195)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 143
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.79 E-value=1.2e-19 Score=177.08 Aligned_cols=164 Identities=14% Similarity=0.193 Sum_probs=110.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
...++|+++|++|+|||||+++|.+..+.....+++..++. ..+..+ ....+.||||||++.|..++..+++.+|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 34579999999999999999999988776555555544432 233332 4578999999999999998889999999999
Q ss_pred EEEEccCCCChhHH-HHH-HHhhh--cCCCEEEEEeCCCCCCCCcc--hhh----hhh-hhcccchhccCCcceEEEEee
Q 005218 266 LVVAADDGVMPQTL-EAI-AHANA--ANVPIVVAINKCDKPAADPE--RVK----NQL-GAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 266 lVvDa~~g~~~q~~-~~l-~~l~~--~~~piIvViNK~Dl~~~~~~--~~~----~~l-~~~~~~~~~~~~~~~vi~vSA 334 (708)
+|+|+++....+.. ..| ..+.. .+.|+++|+||+|+...... ++. ..+ .+....+....+..+++++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999874322222 112 22222 47899999999999632100 000 000 000001111112358999999
Q ss_pred e-cCCCchhHHHHHHHHH
Q 005218 335 V-KKTGLDDLEVALLLQA 351 (708)
Q Consensus 335 k-tg~GI~~L~~~I~~~~ 351 (708)
+ +|.|++++++.|.+.+
T Consensus 164 ~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLAC 181 (184)
T ss_dssp TTBHHHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHH
Confidence 9 6899999999998754
No 144
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=191.00 Aligned_cols=157 Identities=20% Similarity=0.188 Sum_probs=111.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.+.++|+|+|++|||||||+++|.+..+.... + |.+.....+.. .+..+.||||||++.|..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-p--T~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-P--TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-E--ETTEEEEEEEE-TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-c--ccceEEEEEec-CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 46679999999999999999999988765332 2 44455555666 88999999999999999999999999999999
Q ss_pred EEEccCCCChhHH-HHHHH-hh---hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 267 VVAADDGVMPQTL-EAIAH-AN---AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 267 VvDa~~g~~~q~~-~~l~~-l~---~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
|+|+++....+.. ..+.. +. ..++|+|+|+||+|+.+... +.+...+..... ....++++++||++|.|+
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~vSAk~g~gi 314 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RHRNWYIQATCATSGDGL 314 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTC----CSSCEEEEECBTTTTBTH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhh----hcCCCEEEEEECCCCcCH
Confidence 9999875443322 22222 22 23789999999999975422 222222221111 123468999999999999
Q ss_pred hhHHHHHHHHH
Q 005218 341 DDLEVALLLQA 351 (708)
Q Consensus 341 ~~L~~~I~~~~ 351 (708)
++|+++|...+
T Consensus 315 ~el~~~l~~~l 325 (329)
T 3o47_A 315 YEGLDWLSNQL 325 (329)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 145
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.79 E-value=2.9e-19 Score=186.34 Aligned_cols=153 Identities=20% Similarity=0.234 Sum_probs=119.1
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh------hhhccc--cc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA------MRKRGA--AV 260 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~------~~~~~~--~~ 260 (708)
.++|+++|++|+|||||+|+|++.....+..+|+|.+.....+.+ ++..+.||||||+..+.. ....++ ..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 468999999999999999999998887788899999988888887 888999999999887765 333333 68
Q ss_pred ccEEEEEEEccCCCChhHHHHHHHhhhcC-CCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 261 TDIVVLVVAADDGVMPQTLEAIAHANAAN-VPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 261 aDivllVvDa~~g~~~q~~~~l~~l~~~~-~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
+|++++|+|+++. ......+..+...+ +|+++|+||+|+..... ......+.. .+ .+|++++||++|.
T Consensus 82 ~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~------~l--g~~~~~~Sa~~g~ 151 (271)
T 3k53_A 82 ADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRK------EL--GVPVIPTNAKKGE 151 (271)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHH------HH--SSCEEECBGGGTB
T ss_pred CcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHH------Hc--CCcEEEEEeCCCC
Confidence 9999999999874 45555666666677 99999999999742110 000111111 11 2589999999999
Q ss_pred CchhHHHHHHHHHH
Q 005218 339 GLDDLEVALLLQAE 352 (708)
Q Consensus 339 GI~~L~~~I~~~~~ 352 (708)
|+++|++.|.....
T Consensus 152 gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 152 GVEELKRMIALMAE 165 (271)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988754
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=3.1e-19 Score=199.02 Aligned_cols=163 Identities=21% Similarity=0.209 Sum_probs=117.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhh-----------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR----------- 254 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~----------- 254 (708)
...++|+|+|+||||||||+|+|++.... .++.+|+|++.....+.+ +|..+.+|||||++.+....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 35689999999999999999999988765 588899999988888888 88899999999985443221
Q ss_pred -hcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcc---hhhhhhhhcccchhccCCcceEE
Q 005218 255 -KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPE---RVKNQLGAEGLELEDWGGKVQVV 330 (708)
Q Consensus 255 -~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~---~~~~~l~~~~~~~~~~~~~~~vi 330 (708)
..+++.+|++++|+|++++...++......+...++|+++|+||+|+...+.. +..+.+... + .+....+++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREK---L-YFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHH---C-GGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHH---h-ccCCCCcEE
Confidence 23567899999999999988888877777777789999999999999643211 111122111 1 111246899
Q ss_pred EEeeecCCCchhHHHHHHHHHHHc
Q 005218 331 EVSAVKKTGLDDLEVALLLQAEMM 354 (708)
Q Consensus 331 ~vSAktg~GI~~L~~~I~~~~~~~ 354 (708)
++||++|.|+++|++.+.......
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998876543
No 147
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.78 E-value=2.4e-19 Score=174.56 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=106.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCC-----------cchhhhhhhccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPG-----------HAAFSAMRKRGA 258 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG-----------~~~f~~~~~~~~ 258 (708)
++|+++|++|+|||||+++|.+..+.....+++|.+..... . . .+.+||||| ++.+..++..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~--~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--W-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--E-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe--c-C--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999998887777788887655433 3 2 799999999 556666655555
Q ss_pred cc----ccEEEEEEEccCC-----------CChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhcc
Q 005218 259 AV----TDIVVLVVAADDG-----------VMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDW 323 (708)
Q Consensus 259 ~~----aDivllVvDa~~g-----------~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~ 323 (708)
+. ++++++|+|++.. ..+++.+.+..+...++|+++|+||+|+.....+.........+..+..+
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 156 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEI 156 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhcc
Confidence 44 4566666665431 11122334455556789999999999996533111111111222211111
Q ss_pred CCcceEEEEeeecCCCchhHHHHHHHHHHH
Q 005218 324 GGKVQVVEVSAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 324 ~~~~~vi~vSAktg~GI~~L~~~I~~~~~~ 353 (708)
..+++++||++|.|+++++++|.+.+..
T Consensus 157 --~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 157 --DKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp --HHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --CCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 2468999999999999999999887643
No 148
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.78 E-value=1.7e-20 Score=185.52 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=108.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
.+.++|+++|++|+|||||+|+|.+..+.....+++|.+.....+.+ ++ ..+.||||||++.+..++..+++.+|++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 34589999999999999999999998887766777777776666666 44 6799999999999999999999999999
Q ss_pred EEEEEccCCCChhHHHHH-HHhh---hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCc
Q 005218 265 VLVVAADDGVMPQTLEAI-AHAN---AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGL 340 (708)
Q Consensus 265 llVvDa~~g~~~q~~~~l-~~l~---~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI 340 (708)
++|+|+++....+....| ..+. ..++|+++|+||+|+........ ..... .... ..++++++||++|.|+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~-~~~~~---~~~~--~~~~~~~vSA~~g~gv 183 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY-TTAKE---FADS--LGIPFLETSAKNATNV 183 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCS-CC-CH---HHHT--TTCCBCCCCC---HHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCH-HHHHH---HHHH--cCCeEEEEECCCCCCH
Confidence 999999985433332222 2222 23789999999999964321110 00000 0011 1357899999999999
Q ss_pred hhHHHHHHHH
Q 005218 341 DDLEVALLLQ 350 (708)
Q Consensus 341 ~~L~~~I~~~ 350 (708)
++++++|.+.
T Consensus 184 ~~l~~~l~~~ 193 (199)
T 3l0i_B 184 EQSFMTMAAE 193 (199)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 149
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=1.2e-19 Score=200.51 Aligned_cols=154 Identities=23% Similarity=0.319 Sum_probs=115.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhh-------hhcccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAM-------RKRGAA 259 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~-------~~~~~~ 259 (708)
..++|+|+|++|+|||||+|+|++..+. .+..+++|.+.....+.+.....+.||||||+.+|..+ ...++.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 4579999999999999999999998875 47788999998888888744459999999999887654 234678
Q ss_pred cccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 260 VTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 260 ~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
.+|++|+|+|+ +...++...+..+...++|+++|+||+|+......+..+.+.+ .+ .++++++||++|.|
T Consensus 113 ~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~------~~--g~~v~~vSAktg~g 182 (423)
T 3qq5_A 113 RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYES------RY--EAKVLLVSALQKKG 182 (423)
T ss_dssp SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSC------CT--TCCCCCCSSCCTTS
T ss_pred cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHH------Hc--CCCEEEEECCCCCC
Confidence 89999999999 6678888888888888999999999999976554323222221 11 35899999999999
Q ss_pred chhHHHHHHHHH
Q 005218 340 LDDLEVALLLQA 351 (708)
Q Consensus 340 I~~L~~~I~~~~ 351 (708)
+++|+++|...+
T Consensus 183 I~eL~~~L~~~l 194 (423)
T 3qq5_A 183 FDDIGKTISEIL 194 (423)
T ss_dssp TTTHHHHHHHHS
T ss_pred HHHHHHHHHHhh
Confidence 999999998864
No 150
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.78 E-value=3.7e-19 Score=174.23 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=105.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIV 264 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDiv 264 (708)
.+.++|+++|++|+|||||+++|++..+.....+. ..++ ...+.+ ++ ..+.||||||++.|. +++.+|++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEE-TTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEE-CCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 45689999999999999999999988876544443 2222 244445 44 567889999998876 66789999
Q ss_pred EEEEEccCCCChhHH-HHHHHhhh----cCCCEEEEEeCCCCCCCCcchhh-hhhhhcccchhccCCcceEEEEeeecCC
Q 005218 265 VLVVAADDGVMPQTL-EAIAHANA----ANVPIVVAINKCDKPAADPERVK-NQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 265 llVvDa~~g~~~q~~-~~l~~l~~----~~~piIvViNK~Dl~~~~~~~~~-~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
++|+|+++....+.. ..+..+.. .++|+++|+||+|+.......+. +.... +....+..+++++||++|.
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~----~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARK----LSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHH----HHHHTTTCEEEEEBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHH----HHHHcCCCeEEEecCCCCC
Confidence 999999984433332 22233322 47899999999999532211111 11111 1111123689999999999
Q ss_pred CchhHHHHHHHHHH
Q 005218 339 GLDDLEVALLLQAE 352 (708)
Q Consensus 339 GI~~L~~~I~~~~~ 352 (708)
|+++++++|...+.
T Consensus 166 gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 166 NVERVFQDVAQKVV 179 (184)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987654
No 151
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=6.3e-19 Score=173.64 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=109.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+.++|+++|++|+|||||+++|.+..+.....++++.++. ..+..+ ....+.||||||++. ..++..+++.+|++++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE-EEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 5689999999999999999999988876655555554442 223332 346799999999988 6677778899999999
Q ss_pred EEEccCCCCh----hHHHHHHHh-hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCC-Cc
Q 005218 267 VVAADDGVMP----QTLEAIAHA-NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT-GL 340 (708)
Q Consensus 267 VvDa~~g~~~----q~~~~l~~l-~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~-GI 340 (708)
|+|+++.... .+...+... ...++|+++|+||+|+....... ....... ...+ .++++++||++|. |+
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~~---~~~~--~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVS-TEEGEKL---ATEL--ACAFYECSACTGEGNI 178 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSC-HHHHHHH---HHHH--TSEEEECCTTTCTTCH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccC-HHHHHHH---HHHh--CCeEEEECCCcCCcCH
Confidence 9999873221 122222222 23589999999999996421110 0111111 0111 2589999999999 99
Q ss_pred hhHHHHHHHHHH
Q 005218 341 DDLEVALLLQAE 352 (708)
Q Consensus 341 ~~L~~~I~~~~~ 352 (708)
++++++|...+.
T Consensus 179 ~~l~~~l~~~i~ 190 (196)
T 2atv_A 179 TEIFYELCREVR 190 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 152
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.77 E-value=4.9e-19 Score=170.93 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=102.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+..+|+++|++|||||||+++|.+..+.. ..+++...+ ...+..+ ....+.||||||++. ..+++.+|++++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 45799999999999999999999887764 334333222 3334442 235789999999876 345678999999
Q ss_pred EEEccCCCChhHHHH----HHHhhh---cCCCEEEEEeCCCCCCCCcchh-hhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 267 VVAADDGVMPQTLEA----IAHANA---ANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 267 VvDa~~g~~~q~~~~----l~~l~~---~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
|+|+++....+.... +..+.. .++|+++|+||+|+.......+ .+...... ..+ ...+++++||++|.
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~---~~~-~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX---ADM-KRCSYYETXATYGL 154 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH---HHH-SSEEEEEEBTTTTB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH---Hhh-cCCeEEEEeccccC
Confidence 999987433333332 222222 4789999999999942111111 11111110 111 23589999999999
Q ss_pred CchhHHHHHHHHHH
Q 005218 339 GLDDLEVALLLQAE 352 (708)
Q Consensus 339 GI~~L~~~I~~~~~ 352 (708)
|+++++++|...+.
T Consensus 155 ~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 155 NVDRVFQEVAQKVV 168 (178)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 153
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.77 E-value=1.4e-19 Score=189.22 Aligned_cols=150 Identities=21% Similarity=0.257 Sum_probs=111.2
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh------hhhhcccc--c
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS------AMRKRGAA--V 260 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~------~~~~~~~~--~ 260 (708)
.++|+++|+||+|||||+|+|++.....+..+|+|.+.....+.. +..+.+|||||+..+. .+...++. .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 468999999999999999999988766777789998766555432 6789999999998775 23344443 6
Q ss_pred ccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 261 TDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 261 aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
+|++++|+|+++. ......+..+...++|+++|+||+|+..... ......+.. .+ .+|++++||++|.|
T Consensus 81 ~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~------~l--g~~vi~~SA~~g~g 150 (272)
T 3b1v_A 81 ADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY------HL--GVPVVATSALKQTG 150 (272)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH------HH--TSCEEECBTTTTBS
T ss_pred CCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH------Hc--CCCEEEEEccCCCC
Confidence 9999999999872 3344444556667999999999999842110 000111111 11 25899999999999
Q ss_pred chhHHHHHHHH
Q 005218 340 LDDLEVALLLQ 350 (708)
Q Consensus 340 I~~L~~~I~~~ 350 (708)
+++|+++|...
T Consensus 151 i~el~~~i~~~ 161 (272)
T 3b1v_A 151 VDQVVKKAAHT 161 (272)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=4.8e-19 Score=198.41 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=112.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCC--------cchhhhhhhccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPG--------HAAFSAMRKRGA 258 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG--------~~~f~~~~~~~~ 258 (708)
+.++|+|+|+||||||||+|+|++..+. ....+|+|++.....+.+ .+..+.+||||| ++.+......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTT-CSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 3579999999999999999999998876 477889999988877777 788999999999 666777777888
Q ss_pred ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 259 AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 259 ~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
+.+|++|+|+|+.++....+.+.+..+...++|+++|+||+|+.... ....+....+ ...++++||++|.
T Consensus 101 ~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~~lg--------~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFYSLG--------FGEPYPISGTHGL 170 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSGGGS--------SSSEEECCTTTCT
T ss_pred hhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHHHcC--------CCceEEeeccccc
Confidence 99999999999999999999888888888899999999999986321 1111111111 1246799999999
Q ss_pred CchhHHHHHHHHH
Q 005218 339 GLDDLEVALLLQA 351 (708)
Q Consensus 339 GI~~L~~~I~~~~ 351 (708)
|+.+|++.+....
T Consensus 171 gv~~L~~~i~~~l 183 (456)
T 4dcu_A 171 GLGDLLDAVAEHF 183 (456)
T ss_dssp THHHHHHHHHTTG
T ss_pred chHHHHHHHHhhc
Confidence 9999999987643
No 155
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.77 E-value=4.3e-19 Score=177.19 Aligned_cols=162 Identities=14% Similarity=0.201 Sum_probs=110.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
..++|+++|++|+|||||+++|.+..+.....+++..++. ..+.++ ....+.||||||++.|..++..+++.+|++|+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 4579999999999999999999998876655565555442 233432 34789999999999999999889999999999
Q ss_pred EEEccCCCChhHH-HHH-HHhhh--cCCCEEEEEeCCCCCCCCcchhh-------hhhh-hcccchhccCCcceEEEEee
Q 005218 267 VVAADDGVMPQTL-EAI-AHANA--ANVPIVVAINKCDKPAADPERVK-------NQLG-AEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 267 VvDa~~g~~~q~~-~~l-~~l~~--~~~piIvViNK~Dl~~~~~~~~~-------~~l~-~~~~~~~~~~~~~~vi~vSA 334 (708)
|+|+++....+.. ..| ..+.. .+.|+++|+||+|+.... .... ..+. +....+....+..+++++||
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 184 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccch-hhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence 9999874322222 112 22222 478999999999996321 0000 0000 00001111112358999999
Q ss_pred e-cCCCchhHHHHHHHHH
Q 005218 335 V-KKTGLDDLEVALLLQA 351 (708)
Q Consensus 335 k-tg~GI~~L~~~I~~~~ 351 (708)
+ +|.|++++++.|.+.+
T Consensus 185 k~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 185 LQSENSVRDIFHVATLAC 202 (205)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHH
Confidence 9 6899999999998754
No 156
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.63 E-value=2.7e-20 Score=184.60 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=109.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
.+.++|+++|++|+|||||+++|.+..+.....+++ .+.....+..+ ....+.||||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 466899999999999999999999877654444433 33323333331 3456779999999999999888999999999
Q ss_pred EEEEccCCCChhHHH--HHHHhhhc--CCCEEEEEeCCCCCCCCcc-hhhh-----hh-hhcccchhccCCcceEEEEee
Q 005218 266 LVVAADDGVMPQTLE--AIAHANAA--NVPIVVAINKCDKPAADPE-RVKN-----QL-GAEGLELEDWGGKVQVVEVSA 334 (708)
Q Consensus 266 lVvDa~~g~~~q~~~--~l~~l~~~--~~piIvViNK~Dl~~~~~~-~~~~-----~l-~~~~~~~~~~~~~~~vi~vSA 334 (708)
+|+|+++....+... .+..+... ++|+++|+||+|+...... .... .+ ......+....+..+++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 999998754433332 22233222 7899999999999643210 0000 00 001111111112237899999
Q ss_pred ecCCCchhHHHHHHHH
Q 005218 335 VKKTGLDDLEVALLLQ 350 (708)
Q Consensus 335 ktg~GI~~L~~~I~~~ 350 (708)
++|.|+++|+++|.+.
T Consensus 187 ~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRA 202 (204)
Confidence 9999999999988763
No 157
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.77 E-value=7.8e-19 Score=172.13 Aligned_cols=156 Identities=13% Similarity=0.094 Sum_probs=104.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec-CCeeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS-TGASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
+..+|+++|++|+|||||+++|.+..+.....+++..++ ...+..+ ....+.||||||++.+..+ ..+++.+|++++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 457999999999999999999998876655555544443 2233332 3467889999999988764 568899999999
Q ss_pred EEEccCCCChhHHH-HHHHhhh------cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEee-ecCC
Q 005218 267 VVAADDGVMPQTLE-AIAHANA------ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSA-VKKT 338 (708)
Q Consensus 267 VvDa~~g~~~q~~~-~l~~l~~------~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSA-ktg~ 338 (708)
|+|+++....+... .+..+.. .++|+++|+||+|+....... .++..... ..+ .++++++|| ++|.
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~---~~~--~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVT-KAEGVALA---GRF--GCLFFEVSACLDFE 171 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSC-HHHHHHHH---HHH--TCEEEECCSSSCSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccC-HHHHHHHH---HHc--CCcEEEEeecCccc
Confidence 99998743222222 2222221 589999999999995321100 01111110 111 258999999 8999
Q ss_pred CchhHHHHHHHHH
Q 005218 339 GLDDLEVALLLQA 351 (708)
Q Consensus 339 GI~~L~~~I~~~~ 351 (708)
|++++++.|...+
T Consensus 172 gv~~lf~~l~~~i 184 (187)
T 3c5c_A 172 HVQHVFHEAVREA 184 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998764
No 158
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.77 E-value=7.2e-19 Score=173.53 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=104.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEe--cCCeeEEEeeCCCcchhhhhh---hcccccc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGM--STGASITFLDTPGHAAFSAMR---KRGAAVT 261 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~--~~g~~v~liDTpG~~~f~~~~---~~~~~~a 261 (708)
.+.++|+++|++|||||||+++|.+..... ...+++.........+ .....+.||||||++.|..+. ..+++.+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 96 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence 456899999999999999999888753332 2222222222222222 256899999999999988777 7889999
Q ss_pred cEEEEEEEccCCCChhHHHH----HHHh--hhcCCCEEEEEeCCCCCCCCcc-hhhhhhh-hcccchhc-c--CCcceEE
Q 005218 262 DIVVLVVAADDGVMPQTLEA----IAHA--NAANVPIVVAINKCDKPAADPE-RVKNQLG-AEGLELED-W--GGKVQVV 330 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~----l~~l--~~~~~piIvViNK~Dl~~~~~~-~~~~~l~-~~~~~~~~-~--~~~~~vi 330 (708)
|++|+|+|+++. ..+.... +..+ ...++|+++|+||+|+...+.. .....+. .....+.. . ...++++
T Consensus 97 ~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 175 (196)
T 3llu_A 97 GALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFY 175 (196)
T ss_dssp SEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred CEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceE
Confidence 999999999986 3233222 2222 2347899999999998642110 0001110 01111111 0 2246899
Q ss_pred EEeeecCCCchhHHHHHHHH
Q 005218 331 EVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 331 ~vSAktg~GI~~L~~~I~~~ 350 (708)
++||++ .|++++++.|.+.
T Consensus 176 e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 176 LTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp EECTTS-THHHHHHHHHHHH
T ss_pred EEEech-hhHHHHHHHHHHH
Confidence 999999 9999999998764
No 159
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.76 E-value=1.4e-18 Score=196.43 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=115.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLV 267 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllV 267 (708)
+.++|+++|.+|+|||||+|+|.+..+.. ..+ |.+.....+.+ .+..+.||||||++.|..++..+++.+|++|+|
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~--T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIP--TVGFNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCC--CSSEEEEEEES-SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEE
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCC--ccceeEEEEEe-CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 45799999999999999999999887543 223 44455555666 889999999999999999999999999999999
Q ss_pred EEccCCCChhHHH-HHHHhh----hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 268 VAADDGVMPQTLE-AIAHAN----AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 268 vDa~~g~~~q~~~-~l~~l~----~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
||+++....+... .+..+. ..++|+|+|+||+|+.+... ..+...+. .... ....++++++||++|.|++
T Consensus 397 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 397 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG---LTRI-RDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTT---CTTC-CSSCEEEEECBTTTTBTHH
T ss_pred EECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhc---hhhh-hcCCeEEEEEECCCCCCHH
Confidence 9999854333222 222222 24789999999999965322 22222221 1111 1134589999999999999
Q ss_pred hHHHHHHHHHHH
Q 005218 342 DLEVALLLQAEM 353 (708)
Q Consensus 342 ~L~~~I~~~~~~ 353 (708)
+|+++|.+.+..
T Consensus 473 ~l~~~l~~~~~~ 484 (497)
T 3lvq_E 473 EGLTWLTSNYKS 484 (497)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999886543
No 160
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=2.6e-18 Score=172.85 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=104.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCC--eeEEEeeCCCcch-hhhhhhcccccccE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAA-FSAMRKRGAAVTDI 263 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~-f~~~~~~~~~~aDi 263 (708)
..++|+++|.+|||||||+|+|.+..... ...++++.+.....+.+ ++ ..+.+|||+|.+. +..++..+++.+|+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 45799999999999999999999754432 33344555544445555 44 4578899999876 45566677899999
Q ss_pred EEEEEEccCCCChhHHHHH-HHhh----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCC
Q 005218 264 VVLVVAADDGVMPQTLEAI-AHAN----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKT 338 (708)
Q Consensus 264 vllVvDa~~g~~~q~~~~l-~~l~----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~ 338 (708)
+++|||.++....+....| ..+. ..++|+|+|+||+|+.....-.. .+.... ...+ .++++++||++|.
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~-~e~~~~---a~~~--~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSV-SEGRAC---AVVF--DCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCH-HHHHHH---HHHH--TCEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeH-HHHHHH---HHHc--CCEEEEEeCCCCC
Confidence 9999999873222222222 2222 24789999999999953211000 010000 0111 2589999999999
Q ss_pred CchhHHHHHHHHHH
Q 005218 339 GLDDLEVALLLQAE 352 (708)
Q Consensus 339 GI~~L~~~I~~~~~ 352 (708)
|++++|++|.+.+.
T Consensus 189 ~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 189 NVKELFEGIVRQVR 202 (211)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988653
No 161
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.74 E-value=1.4e-18 Score=179.57 Aligned_cols=162 Identities=13% Similarity=0.116 Sum_probs=112.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCc-eEEeeeEEEEEecCCeeEEEeeCCCcchhhhh-----------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGG-ITQHMGAFVVGMSTGASITFLDTPGHAAFSAM----------- 253 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~g-tT~di~~~~v~~~~g~~v~liDTpG~~~f~~~----------- 253 (708)
.+.++|+|+|++|+|||||+|+|++..... ...++ +|++.....+.+ ++..+.||||||+.++...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 356899999999999999999999887443 44444 788777777777 8899999999998765321
Q ss_pred hhcccccccEEEEEEEccCCCChhHHHHHHHhhhc-----CCCEEEEEe-CCCCCCCCcchhhh-----hhhhcccchhc
Q 005218 254 RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAA-----NVPIVVAIN-KCDKPAADPERVKN-----QLGAEGLELED 322 (708)
Q Consensus 254 ~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~-----~~piIvViN-K~Dl~~~~~~~~~~-----~l~~~~~~~~~ 322 (708)
...+++.+|++|+|+|+++ ...+....+..+... +.|.++++| |+|+.+.+...... .+... ...
T Consensus 99 ~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~---~~~ 174 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKL---VAA 174 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHH---HHH
T ss_pred HHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHH---HHH
Confidence 2236788999999999985 666666666555543 568777777 99997433222111 00000 011
Q ss_pred cCCcc-eE--EEEeeecCCCchhHHHHHHHHHHH
Q 005218 323 WGGKV-QV--VEVSAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 323 ~~~~~-~v--i~vSAktg~GI~~L~~~I~~~~~~ 353 (708)
+.... ++ +++||++|.|+++|++.|...+..
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 11111 12 789999999999999999887653
No 162
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.74 E-value=2.6e-18 Score=182.62 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=113.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchh-----hhhhhcccccc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF-----SAMRKRGAAVT 261 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f-----~~~~~~~~~~a 261 (708)
...+|+++|++|+|||||+++|.+..... +..+++|.+.....+.+.++..+.+|||||++.| ..++..+++.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 45789999999999999999998875443 5567888887777766557889999999999988 56677788999
Q ss_pred cEEEEEEEccCCCChhHHHHH----HHhh--hcCCCEEEEEeCCCCCCCCcch-hhhhhhhcccchh-ccCC-cceEEEE
Q 005218 262 DIVVLVVAADDGVMPQTLEAI----AHAN--AANVPIVVAINKCDKPAADPER-VKNQLGAEGLELE-DWGG-KVQVVEV 332 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~l----~~l~--~~~~piIvViNK~Dl~~~~~~~-~~~~l~~~~~~~~-~~~~-~~~vi~v 332 (708)
|++|+|+|+++....+....| ..+. ..++|+++|+||+|+...+... ...........+. .++. .++++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 999999999986554444332 2222 2379999999999996421111 0001111111111 2221 3789999
Q ss_pred eeecCCCchhHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLL 349 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~ 349 (708)
||++ .|+.+++..+..
T Consensus 162 Sa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp CTTS-SHHHHHHHHHHH
T ss_pred eecC-ChHHHHHHHHHH
Confidence 9999 788888877665
No 163
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.73 E-value=4.5e-18 Score=167.81 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=100.8
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCe--eEEEeeCCCcch-hhhhhhcccccccEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGA--SITFLDTPGHAA-FSAMRKRGAAVTDIV 264 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~--~v~liDTpG~~~-f~~~~~~~~~~aDiv 264 (708)
.++|+++|.+|||||||+|+|.+.... .+..++++.+.....+.+ ++. .+.+|||+|.+. +..++..+++.+|++
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 478999999999999999999864432 233344555544445555 443 567899999776 444556677889999
Q ss_pred EEEEEccCCCChhHHHH----HHHh-hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCC
Q 005218 265 VLVVAADDGVMPQTLEA----IAHA-NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTG 339 (708)
Q Consensus 265 llVvDa~~g~~~q~~~~----l~~l-~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~G 339 (708)
++|||.++....+.... +... ...++|+++|+||+|+.....-.. .. +..+.. ...++++++||++|.|
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~-~~----~~~~a~-~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV-SE----GRAXAV-VFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH-HH----HHHHHH-HTTCEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH-HH----HHHHHH-HhCCceEEeccccCCC
Confidence 99999987332222222 2222 124789999999999853111000 00 111111 0135899999999999
Q ss_pred chhHHHHHHHHHH
Q 005218 340 LDDLEVALLLQAE 352 (708)
Q Consensus 340 I~~L~~~I~~~~~ 352 (708)
+++++++|...+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 164
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.73 E-value=4.5e-18 Score=166.12 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=101.7
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCc--ccccccCceEEeeeEEEEEe----cCCeeEEEeeCCCcchhhhhhhccccccc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTS--LVAKEAGGITQHMGAFVVGM----STGASITFLDTPGHAAFSAMRKRGAAVTD 262 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~--~~~~~~~gtT~di~~~~v~~----~~g~~v~liDTpG~~~f~~~~~~~~~~aD 262 (708)
..+|+++|++|||||||+++|.+.. +.....++++.++....+.. .....+.+|||||++.|..++..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 3689999999999999999999853 33334455555554443322 14678999999999999888888889999
Q ss_pred EEEEEEEccCCC-ChhHH-HHHHHhh--hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchh-ccCC--cceEEEEeee
Q 005218 263 IVVLVVAADDGV-MPQTL-EAIAHAN--AANVPIVVAINKCDKPAADPERVKNQLGAEGLELE-DWGG--KVQVVEVSAV 335 (708)
Q Consensus 263 ivllVvDa~~g~-~~q~~-~~l~~l~--~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~-~~~~--~~~vi~vSAk 335 (708)
++++|+|.+++. ..... ..+..+. ..+.|+++|+||+|+... .............+. .++. ..+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 999999998752 11122 2222222 247899999999999542 111100001000111 1111 1248999999
Q ss_pred cCC-CchhHHHHHHHHHH
Q 005218 336 KKT-GLDDLEVALLLQAE 352 (708)
Q Consensus 336 tg~-GI~~L~~~I~~~~~ 352 (708)
+|. |+++|++.|...+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 160 EESDALAKLRKTIINESL 177 (184)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHh
Confidence 997 99999999987653
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.72 E-value=1.5e-17 Score=180.78 Aligned_cols=165 Identities=22% Similarity=0.273 Sum_probs=106.2
Q ss_pred CCCCCE-EEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcc---------hhhhhhh
Q 005218 186 LPRPPV-VTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA---------AFSAMRK 255 (708)
Q Consensus 186 ~~~~~~-V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~---------~f~~~~~ 255 (708)
.+.+.. |+|+|++|+|||||+|+|.+......+.+++|+|.....+.+ +|..+.+|||||+. .|....
T Consensus 175 ~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp~~lve~f~~tl- 252 (364)
T 2qtf_A 175 KRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIPPQIVDAFFVTL- 252 (364)
T ss_dssp ----CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE-TTEEEEEEECCCBCSSCCGGGHHHHHHHH-
T ss_pred hhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE-CCEEEEEEeCCCchhcCCHHHHHHHHHHH-
Confidence 344555 999999999999999999998876677889999988888888 77999999999962 233222
Q ss_pred cccccccEEEEEEEccCCC--ChhH----HHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhcc-CCcce
Q 005218 256 RGAAVTDIVVLVVAADDGV--MPQT----LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDW-GGKVQ 328 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~--~~q~----~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 328 (708)
..+..+|++++|+|++++. .... .+.+..+...+.|+|+|+||+|+.+.........+... ...+ ....+
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l---~~~l~~~~~~ 329 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKL---SKELYSPIFD 329 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHH---HHHHCSCEEE
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHH---HHHhcCCCCc
Confidence 3578999999999998753 2222 22333333357899999999999653311111111000 0111 12347
Q ss_pred EEEEeeecCCCchhHHHHHHHHHHHcc
Q 005218 329 VVEVSAVKKTGLDDLEVALLLQAEMMN 355 (708)
Q Consensus 329 vi~vSAktg~GI~~L~~~I~~~~~~~~ 355 (708)
++++||++|.|+++|+++|........
T Consensus 330 ~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 330 VIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 899999999999999999988765443
No 166
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.72 E-value=1.5e-17 Score=174.84 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=110.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccc------ccccCc----------------------eEEee------------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV------AKEAGG----------------------ITQHM------------ 226 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~------~~~~~g----------------------tT~di------------ 226 (708)
...++|+++|++|+|||||+|+|++..+. .+..|+ +|++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35689999999999999999999988764 233444 22220
Q ss_pred -----------eEEEEEecCCeeEEEeeCCCcc-------------hhhhhhhcccccccEEE-EEEEccCCCChhHH-H
Q 005218 227 -----------GAFVVGMSTGASITFLDTPGHA-------------AFSAMRKRGAAVTDIVV-LVVAADDGVMPQTL-E 280 (708)
Q Consensus 227 -----------~~~~v~~~~g~~v~liDTpG~~-------------~f~~~~~~~~~~aDivl-lVvDa~~g~~~q~~-~ 280 (708)
....+..+++..+.||||||+. .+..+...+++.++.++ +|+|++++...++. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0111111134789999999964 34455566777787665 79999887766664 4
Q ss_pred HHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 281 AIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 281 ~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
.+..+...+.|+++|+||+|+.+.... ....+....... ..+..+++++||++|.|+++|+++|....+
T Consensus 184 ~~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~~--~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 184 IAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPL--RRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSCTTCC-CHHHHTTCSSCC--TTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHhCCCCCeEEEEEEccccCCCCch-HHHHHhCCcCcC--CCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 666676678999999999999753321 122222111010 012357899999999999999999987544
No 167
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.72 E-value=1.2e-17 Score=177.68 Aligned_cols=162 Identities=19% Similarity=0.198 Sum_probs=111.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCe--eEEEeeCCCcchhhhhhhcccccccE
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGA--SITFLDTPGHAAFSAMRKRGAAVTDI 263 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~--~v~liDTpG~~~f~~~~~~~~~~aDi 263 (708)
.+..++|+++|++|+|||||+++|.+..+.....+ ++.+.....+.. ++. .+.||||||++.+..++..+++.+|+
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~-t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 229 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 229 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCC-CSEEEEEEEEEE-TTEEEEEEEEEECCCGGGTTTGGGGCTTCSE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCC-cccceeEEEEEE-CCEEEEEEEEeCCCchhhhHHHHHhccCCCE
Confidence 34568999999999999999999998776544444 444444444555 444 45599999999999999999999999
Q ss_pred EEEEEEccCCCChhHHH--HHHHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhh---------cccchhccCCcceEE
Q 005218 264 VVLVVAADDGVMPQTLE--AIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGA---------EGLELEDWGGKVQVV 330 (708)
Q Consensus 264 vllVvDa~~g~~~q~~~--~l~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~vi 330 (708)
+++|+|+++....+... .+..+.. .++|+++|+||+|+.... .....+.. ....+....+..+++
T Consensus 230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 307 (332)
T 2wkq_A 230 FLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 307 (332)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccccc--chhhhccccccccccHHHHHHHHHHcCCcEEE
Confidence 99999998744333321 1222222 289999999999995421 10000000 000111111224899
Q ss_pred EEeeecCCCchhHHHHHHHHH
Q 005218 331 EVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 331 ~vSAktg~GI~~L~~~I~~~~ 351 (708)
++||++|.|+++|++.|...+
T Consensus 308 ~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 308 ECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998754
No 168
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.70 E-value=1e-17 Score=172.45 Aligned_cols=163 Identities=12% Similarity=0.075 Sum_probs=108.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccccccc--CceEEeeeEEEEEecCCeeEEEeeCCCc--------chhhhhhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEA--GGITQHMGAFVVGMSTGASITFLDTPGH--------AAFSAMRKR 256 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~--~gtT~di~~~~v~~~~g~~v~liDTpG~--------~~f~~~~~~ 256 (708)
...++|+++|++|+|||||+|+|++........ .++|++.....+.. ++..+.||||||. +.+.....+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 356899999999999999999999988765332 35777777677777 8899999999996 333333333
Q ss_pred cc----ccccEEEEEEEccCCCChhHHHHHHHhhhc------CCCEEEEEeCCCCCCCCcchhhhhh--hhcccchhccC
Q 005218 257 GA----AVTDIVVLVVAADDGVMPQTLEAIAHANAA------NVPIVVAINKCDKPAADPERVKNQL--GAEGLELEDWG 324 (708)
Q Consensus 257 ~~----~~aDivllVvDa~~g~~~q~~~~l~~l~~~------~~piIvViNK~Dl~~~~~~~~~~~l--~~~~~~~~~~~ 324 (708)
++ ..+|++|+|+|+++ ....+...+..+... +.|+|+++||+|+.+.+.+...... .......+.++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 33 89999999999985 666666666555442 7899999999999754433222110 00111122333
Q ss_pred CcceEEEEeeec-----CCCchhHHHHHHHHHHH
Q 005218 325 GKVQVVEVSAVK-----KTGLDDLEVALLLQAEM 353 (708)
Q Consensus 325 ~~~~vi~vSAkt-----g~GI~~L~~~I~~~~~~ 353 (708)
. .++.+++.. +.|+++|++.|......
T Consensus 177 ~--~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 G--RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp T--CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 3 344444333 68999999999887654
No 169
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.69 E-value=8.8e-18 Score=181.02 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=111.3
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcch----hhhh---hhcccccc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA----FSAM---RKRGAAVT 261 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~----f~~~---~~~~~~~a 261 (708)
-++|+++|.||||||||+|+|.+....+...+.+|.+.....+.++++..+.||||||+.+ +..+ ..+.+..+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 3579999999999999999999887777777888888777777774458999999999643 2222 22335569
Q ss_pred cEEEEEEEccC---CCChhHHH-HHHHhhh-----cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEE
Q 005218 262 DIVVLVVAADD---GVMPQTLE-AIAHANA-----ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 262 DivllVvDa~~---g~~~q~~~-~l~~l~~-----~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
|++|+|+|+++ ....+... ++..+.. .++|+++|+||+|+... ....+.+.. .+....+++++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~~~~l~~------~l~~~~~v~~i 309 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFKE------KLTDDYPVFPI 309 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHHH------HCCSCCCBCCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHHHHHHHH------HhhcCCCEEEE
Confidence 99999999986 22222222 2233332 47899999999999642 111122211 11112578999
Q ss_pred eeecCCCchhHHHHHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~~~~~ 353 (708)
||+++.|+++|+++|...+..
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTS
T ss_pred ECCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999987643
No 170
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.68 E-value=1.2e-16 Score=173.44 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=112.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh---------hhhcc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA---------MRKRG 257 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~---------~~~~~ 257 (708)
...++|+++|++|+|||||+|+|.+........+++|.+.....+.. .+..+.+|||||+..+.. .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 46789999999999999999999988866666778888776666666 688999999999754321 11123
Q ss_pred cccccEEEEEEEccCCC--ChhH-HHHHHHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEE
Q 005218 258 AAVTDIVVLVVAADDGV--MPQT-LEAIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~--~~q~-~~~l~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
...+|++++|+|+++.. ..+. ...+..+.. .++|+++|+||+|+... ..+ ...... ... ...+++++
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~--~~~-~~~~~~---~~~--~~~~~~~i 315 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE--ENI-KRLEKF---VKE--KGLNPIKI 315 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH--HHH-HHHHHH---HHH--TTCCCEEC
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh--HHH-HHHHHH---HHh--cCCCeEEE
Confidence 35699999999988743 3332 233333332 28999999999999642 121 111110 011 13579999
Q ss_pred eeecCCCchhHHHHHHHHHHH
Q 005218 333 SAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 333 SAktg~GI~~L~~~I~~~~~~ 353 (708)
||++|+|+++|+++|...+..
T Consensus 316 SA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 316 SALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp BTTTTBTHHHHHHHHHHHHHH
T ss_pred eCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999876643
No 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.67 E-value=1.5e-16 Score=157.28 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=109.3
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCC--eeEEEeeCCCcchhhhhhhcccccccEEEE
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAFSAMRKRGAAVTDIVVL 266 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f~~~~~~~~~~aDivll 266 (708)
.++|+++|++|||||||+++|.+..+.....++++.+.....+.+ +| ..+.+|||||++.+..++..+++.+|++++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 468999999999999999999998877655566555555555666 55 467889999999988777777889999999
Q ss_pred EEEccCCCChhHHH-HHHHh---hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchh
Q 005218 267 VVAADDGVMPQTLE-AIAHA---NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDD 342 (708)
Q Consensus 267 VvDa~~g~~~q~~~-~l~~l---~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~ 342 (708)
|+|+++....+... .+..+ ...+.|+++++||+|+........ ...... ... ..++++++||+++.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~-~~a~~l---~~~--~~~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT-DEARAF---AEK--NNLSFIETSALDSTNVEE 157 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH-HHHHHH---HHH--TTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH-HHHHHH---HHH--cCCeEEEEeCCCCCCHHH
Confidence 99998743322221 22222 224688999999999953211111 111100 011 135789999999999999
Q ss_pred HHHHHHHHHH
Q 005218 343 LEVALLLQAE 352 (708)
Q Consensus 343 L~~~I~~~~~ 352 (708)
+++.|...+.
T Consensus 158 l~~~l~~~~~ 167 (199)
T 2f9l_A 158 AFKNILTEIY 167 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 172
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.67 E-value=6.3e-17 Score=184.75 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=100.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEE------EEec---CCeeEEEeeCCCcchhhhhhhcc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFV------VGMS---TGASITFLDTPGHAAFSAMRKRG 257 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~------v~~~---~g~~v~liDTpG~~~f~~~~~~~ 257 (708)
.+..+|+++|.+|||||||+|+|.+..+.....+++..++.... +... .+..+.+|||||++.+......+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 45689999999999999999999988776544444433333221 1111 36899999999999999888888
Q ss_pred cccccEEEEEEEccCCCChhHHHHHHHhhh--cCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeee
Q 005218 258 AAVTDIVVLVVAADDGVMPQTLEAIAHANA--ANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAV 335 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~~~q~~~~l~~l~~--~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAk 335 (708)
++.+|++|+|+|+++. ......+..+.. .+.|+|+|+||+|+....... .+.+.... ... ..+++++||+
T Consensus 119 l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~-~~~~~~~~---~~~--~~~~~~vSA~ 190 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE-QKKINERF---PAI--ENRFHRISCK 190 (535)
T ss_dssp HHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC-HHHHHHHC---GGG--TTCEEECCC-
T ss_pred ccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC-HHHHHHHH---Hhc--CCceEEEecC
Confidence 8999999999999864 333333444443 359999999999996432111 11111111 111 2479999999
Q ss_pred cCCCchhHHHHHHHHHH
Q 005218 336 KKTGLDDLEVALLLQAE 352 (708)
Q Consensus 336 tg~GI~~L~~~I~~~~~ 352 (708)
+|.|+++|++.|...+.
T Consensus 191 ~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 191 NGDGVESIAKSLKSAVL 207 (535)
T ss_dssp ----CTTHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHh
Confidence 99999999999988654
No 173
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.65 E-value=3.5e-16 Score=165.82 Aligned_cols=161 Identities=15% Similarity=0.174 Sum_probs=106.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc------cccC---ceEEe---------------------------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA------KEAG---GITQH--------------------------------- 225 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~------~~~~---gtT~d--------------------------------- 225 (708)
..++|+|+|++|+|||||+|+|++..+.. +..+ .++++
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 45899999999999999999999887621 2233 22221
Q ss_pred -----------------eeEEEEEecCCeeEEEeeCCCcch-------------hhhhhhcccccccEEEEEEEc-cCCC
Q 005218 226 -----------------MGAFVVGMSTGASITFLDTPGHAA-------------FSAMRKRGAAVTDIVVLVVAA-DDGV 274 (708)
Q Consensus 226 -----------------i~~~~v~~~~g~~v~liDTpG~~~-------------f~~~~~~~~~~aDivllVvDa-~~g~ 274 (708)
.....+..+.+..+.||||||+.. +......++..+|++++|+|+ +.+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 001111222557899999999753 445556778999999999997 4455
Q ss_pred ChhH-HHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhcc-CCcceEEEEeeec---CCCchhHHHHHHH
Q 005218 275 MPQT-LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDW-GGKVQVVEVSAVK---KTGLDDLEVALLL 349 (708)
Q Consensus 275 ~~q~-~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~-~~~~~vi~vSAkt---g~GI~~L~~~I~~ 349 (708)
..+. ...+..+...+.|+++|+||+|+..... .....+.... ..+ .+.++++++||.+ +.|++++++.+..
T Consensus 183 ~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~-~~~~~~~~~~---~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 183 ANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT-DAMEVLTGRV---IPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp TTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC-CCHHHHTTSS---SCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch-HHHHHHhCCC---ccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 4333 4677777778899999999999975432 1222222110 011 1234566677777 8999999998887
Q ss_pred HHH
Q 005218 350 QAE 352 (708)
Q Consensus 350 ~~~ 352 (708)
...
T Consensus 259 ~~~ 261 (315)
T 1jwy_B 259 YFK 261 (315)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 174
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.64 E-value=5.4e-17 Score=167.77 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=101.5
Q ss_pred CCCCCEEEEEecC---------CCCchHHHHHhhc---CcccccccCce-EEeeeEEEEE--------------e-cCCe
Q 005218 186 LPRPPVVTVMGHV---------DHGKTSLLDALRQ---TSLVAKEAGGI-TQHMGAFVVG--------------M-STGA 237 (708)
Q Consensus 186 ~~~~~~V~IvG~~---------nvGKSSLln~L~~---~~~~~~~~~gt-T~di~~~~v~--------------~-~~g~ 237 (708)
..+.++|+++|.+ |||||||+++|.+ ..+.....+++ +.++....+. . ....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3456899999999 9999999999998 44444444444 3332211111 1 1446
Q ss_pred eEEEee-----------------------CCCcchhhhhhhcccc---------------------cccEEEEEEEccCC
Q 005218 238 SITFLD-----------------------TPGHAAFSAMRKRGAA---------------------VTDIVVLVVAADDG 273 (708)
Q Consensus 238 ~v~liD-----------------------TpG~~~f~~~~~~~~~---------------------~aDivllVvDa~~g 273 (708)
.+.||| ++|++.|..++..+++ .||++|+|+|+++.
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 789999 5566666666666665 79999999999985
Q ss_pred --CChhHHHH-HHHh----hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHH
Q 005218 274 --VMPQTLEA-IAHA----NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVA 346 (708)
Q Consensus 274 --~~~q~~~~-l~~l----~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~ 346 (708)
...+.... +..+ ...++|+++|+||+|+... ..+ ...... ......++++++||++|.|+++++++
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v-~~~~~~----~~~~~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE--RYI-RDAHTF----ALSKKNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH--HHH-HHHHHH----HHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc--HHH-HHHHHH----HHhcCCCeEEEEECCCCCCHHHHHHH
Confidence 33333222 2222 2357999999999999531 111 111111 11112358999999999999999999
Q ss_pred HHHHH
Q 005218 347 LLLQA 351 (708)
Q Consensus 347 I~~~~ 351 (708)
|...+
T Consensus 249 l~~~l 253 (255)
T 3c5h_A 249 LVQLI 253 (255)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98754
No 175
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.64 E-value=2e-16 Score=165.21 Aligned_cols=154 Identities=19% Similarity=0.261 Sum_probs=89.8
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccc--------cCceEEeeeEEEEEecCC--eeEEEeeCCCcchh-------hh
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKE--------AGGITQHMGAFVVGMSTG--ASITFLDTPGHAAF-------SA 252 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~--------~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f-------~~ 252 (708)
++|+++|++|+|||||+|+|++....... .++++.+.....+.. ++ ..++||||||+.++ ..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhhHHH
Confidence 68999999999999999999877765433 344444544444443 44 48999999997322 22
Q ss_pred hh-------hccc-------------ccccEEEEEEEccC-CCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhh
Q 005218 253 MR-------KRGA-------------AVTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKN 311 (708)
Q Consensus 253 ~~-------~~~~-------------~~aDivllVvDa~~-g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~ 311 (708)
+. ..++ ..+|+++++++.+. +..+.+...+..+.. ++|+|+|+||+|+... .+...
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~--~e~~~ 164 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTP--EECQQ 164 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCH--HHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCH--HHHHH
Confidence 21 1111 23778999986654 788888888888876 8999999999998532 22211
Q ss_pred hhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHH
Q 005218 312 QLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLL 349 (708)
Q Consensus 312 ~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~ 349 (708)
........+.. ..++++++||+++.|+++|+++|..
T Consensus 165 ~~~~i~~~l~~--~~i~v~~~sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 165 FKKQIMKEIQE--HKIKIYEFPETDDEEENKLVKKIKD 200 (274)
T ss_dssp HHHHHHHHHHH--TTCCCCCC-----------CHHHHH
T ss_pred HHHHHHHHHHH--cCCeEEcCCCCCChhHHHHHHHHhc
Confidence 11110001111 1357889999999999999998876
No 176
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=1.2e-16 Score=159.67 Aligned_cols=144 Identities=22% Similarity=0.296 Sum_probs=89.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc---cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhccccc---
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA---KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAV--- 260 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~---~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~--- 260 (708)
.+.++|+++|++|+|||||+++|.+..+.. +..++++.++ .+..+.+|||||++.+...+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 467899999999999999999999877543 2334444332 55789999999999998888777766
Q ss_pred -ccEEEEEEEcc-CCC-ChhHHHHHHHhh-------hcCCCEEEEEeCCCCCCCCc-chhhhhhhhcccchhccCCcceE
Q 005218 261 -TDIVVLVVAAD-DGV-MPQTLEAIAHAN-------AANVPIVVAINKCDKPAADP-ERVKNQLGAEGLELEDWGGKVQV 329 (708)
Q Consensus 261 -aDivllVvDa~-~g~-~~q~~~~l~~l~-------~~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v 329 (708)
+|++|+|+|++ +.. .......+..+. ..++|+++|+||+|+..... ..+...+.+....+... ...++
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 160 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER-RKKSL 160 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH-Hhccc
Confidence 99999999998 322 222222222221 25899999999999975433 22222222211111100 12468
Q ss_pred EEEeeecCCC
Q 005218 330 VEVSAVKKTG 339 (708)
Q Consensus 330 i~vSAktg~G 339 (708)
+++||++|.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 8999999875
No 177
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.63 E-value=6.6e-16 Score=157.50 Aligned_cols=162 Identities=10% Similarity=0.077 Sum_probs=103.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccC--ceEEeeeEEEEEecCCeeEEEeeCCCcc-----------hhhhhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAG--GITQHMGAFVVGMSTGASITFLDTPGHA-----------AFSAMR 254 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~--gtT~di~~~~v~~~~g~~v~liDTpG~~-----------~f~~~~ 254 (708)
+.++|+++|++|+|||||+|+|++..+..+..+ ++|.+.....+.+ ++..+.||||||+. .+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 558999999999999999999999888665544 6787777777777 88999999999943 344444
Q ss_pred hcccccccEEEEEEEccCCCChhHHHHHHHhh-----hcCCCEEEEEeCCCCCCCC-cchhhhhhh-hcccchhccCCcc
Q 005218 255 KRGAAVTDIVVLVVAADDGVMPQTLEAIAHAN-----AANVPIVVAINKCDKPAAD-PERVKNQLG-AEGLELEDWGGKV 327 (708)
Q Consensus 255 ~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~-----~~~~piIvViNK~Dl~~~~-~~~~~~~l~-~~~~~~~~~~~~~ 327 (708)
..+++.+|++|+|+|+++ ........+..+. ....|+++|+||+|+.... .++...... ......+.++.
T Consensus 107 ~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-- 183 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-- 183 (239)
T ss_dssp HHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS--
T ss_pred HhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--
Confidence 456678899999999975 3334444443332 2346999999999986432 111111100 00011122322
Q ss_pred eEEEEeeec-----CCCchhHHHHHHHHHHH
Q 005218 328 QVVEVSAVK-----KTGLDDLEVALLLQAEM 353 (708)
Q Consensus 328 ~vi~vSAkt-----g~GI~~L~~~I~~~~~~ 353 (708)
.++.+++.. +.|+.+|++.+......
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 455665543 36889999988776543
No 178
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.63 E-value=8.2e-16 Score=151.28 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=111.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCe--eEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGA--SITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~--~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
..++|+++|++|||||||+++|.+..+.....++++.++....+.+ +|. .+.+|||||++.+...+..+++.+|.++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 3579999999999999999999998887766677777766666666 554 4567999999998888888888999999
Q ss_pred EEEEccCCCChhHHH-HHHHh---hhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCch
Q 005218 266 LVVAADDGVMPQTLE-AIAHA---NAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLD 341 (708)
Q Consensus 266 lVvDa~~g~~~q~~~-~l~~l---~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~ 341 (708)
+|+|.++....+... .+..+ ...+.|+++++||+|+.+...... ...... ... ..+.++.+||+++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~-~~a~~l---~~~--~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT-DEARAF---AEK--NGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH-HHHHHH---HHH--TTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH-HHHHHH---HHH--cCCEEEEEeCCCCCCHH
Confidence 999987632222221 12222 234678999999999953211110 111100 011 13578999999999999
Q ss_pred hHHHHHHHH
Q 005218 342 DLEVALLLQ 350 (708)
Q Consensus 342 ~L~~~I~~~ 350 (708)
++++.|.+.
T Consensus 181 ~l~~~l~~~ 189 (191)
T 1oix_A 181 AAFQTILTE 189 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 179
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=2.3e-15 Score=149.29 Aligned_cols=159 Identities=22% Similarity=0.279 Sum_probs=102.5
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCccc--ccccCceEEeeeEEEEEecCCeeEEEeeCCCcch----------hhhh
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLV--AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAA----------FSAM 253 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~--~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~----------f~~~ 253 (708)
..++.+|+++|++|+|||||+|+|.+..+. ....+|+|...... .+ ++ .+.+|||||+.. +...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~--~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF--EV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE--EE-ET-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE--Ee-cC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 456789999999999999999999987632 24456666654332 33 23 688999999742 2222
Q ss_pred hhcc---cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchh-hhhhhhcccchhccCCcceE
Q 005218 254 RKRG---AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV-KNQLGAEGLELEDWGGKVQV 329 (708)
Q Consensus 254 ~~~~---~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~v 329 (708)
...+ ...+|.+++|+|++++......+....+...++|++++.||+|+.+....+. ...+... +.......++
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~---~~~~~~~~~~ 175 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREA---VLAFNGDVQV 175 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHH---HGGGCSCEEE
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHH---HHhcCCCCce
Confidence 2222 2578999999999987766555555566667899999999999864211111 1111111 1122223578
Q ss_pred EEEeeecCCCchhHHHHHHHHH
Q 005218 330 VEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 330 i~vSAktg~GI~~L~~~I~~~~ 351 (708)
+++||+++.|++++++.|....
T Consensus 176 ~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 176 ETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeecCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 180
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.60 E-value=9.1e-16 Score=166.11 Aligned_cols=160 Identities=19% Similarity=0.237 Sum_probs=104.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc------ccccCceEEeee----------------------------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV------AKEAGGITQHMG---------------------------------- 227 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~------~~~~~gtT~di~---------------------------------- 227 (708)
..++|+++|++|+|||||+|+|++..+. .+..|+.++-..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999988764 233344221100
Q ss_pred -----------EEEEEecCCeeEEEeeCCCcc-------------hhhhhhhcccc-cccEEEEEEEccCCCChhHH-HH
Q 005218 228 -----------AFVVGMSTGASITFLDTPGHA-------------AFSAMRKRGAA-VTDIVVLVVAADDGVMPQTL-EA 281 (708)
Q Consensus 228 -----------~~~v~~~~g~~v~liDTpG~~-------------~f~~~~~~~~~-~aDivllVvDa~~g~~~q~~-~~ 281 (708)
...+...++..++||||||+. .+..+...++. ..+++++|+|++.+...++. ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 011111135789999999963 23445555554 45577777788776655554 46
Q ss_pred HHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHH
Q 005218 282 IAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 282 l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
+..+...+.|+++|+||+|+.+.... ....+......+ ..+..+++++||++|.|+++|++++...
T Consensus 190 ~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l--~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 190 AKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPL--RRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCC--TTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccc--cCCceEEEeCCcccccccccHHHHHHHH
Confidence 67777778999999999999753321 112221111111 0123578999999999999999999763
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.59 E-value=9.1e-16 Score=180.03 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=111.4
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccc-cccCce--------------EEeee-----------------------
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGI--------------TQHMG----------------------- 227 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gt--------------T~di~----------------------- 227 (708)
.+++++|+|+|++|+|||||+|+|++..+.. +..|+| |+++.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 3467899999999999999999999888654 555555 44320
Q ss_pred ----------------EEEEEecCC---eeEEEeeCCCcchh---hhhhhcccccccEEEEEEEccCCCChhHHHHHH-H
Q 005218 228 ----------------AFVVGMSTG---ASITFLDTPGHAAF---SAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIA-H 284 (708)
Q Consensus 228 ----------------~~~v~~~~g---~~v~liDTpG~~~f---~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~-~ 284 (708)
...+.++.. ..+.||||||+... ......++..+|++|+|+|++++....+...|. .
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 000111000 46999999997663 334456788999999999999988877777664 4
Q ss_pred hhhcCCCEEEEEeCCCCCCCC---cch----------hhhhhhhcccchhc---c-CCcceEEEEeee------------
Q 005218 285 ANAANVPIVVAINKCDKPAAD---PER----------VKNQLGAEGLELED---W-GGKVQVVEVSAV------------ 335 (708)
Q Consensus 285 l~~~~~piIvViNK~Dl~~~~---~~~----------~~~~l~~~~~~~~~---~-~~~~~vi~vSAk------------ 335 (708)
+...+.|+++|+||+|+.... ++. +...+......... + ....++++|||+
T Consensus 226 l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~ 305 (695)
T 2j69_A 226 IKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQA 305 (695)
T ss_dssp TTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTC
T ss_pred HHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchh
Confidence 555688999999999985321 111 11111000000000 0 123479999999
Q ss_pred --cCCCchhHHHHHHHHH
Q 005218 336 --KKTGLDDLEVALLLQA 351 (708)
Q Consensus 336 --tg~GI~~L~~~I~~~~ 351 (708)
+|.|+++|++.|...+
T Consensus 306 ~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 306 DLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp CCTTSSHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHH
Confidence 9999999999887654
No 182
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.59 E-value=1.4e-15 Score=161.85 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=101.8
Q ss_pred EEEEEecCCCCchHHHHHhhcCcccc-cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhh---hhhcccccccEEEE
Q 005218 191 VVTVMGHVDHGKTSLLDALRQTSLVA-KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSA---MRKRGAAVTDIVVL 266 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~---~~~~~~~~aDivll 266 (708)
+|+++|..|||||||++++.+..... ...-+.|..+....+ ....++.+|||||+++|.. .+..+++.++++|+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~Il 78 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVY 78 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEE
Confidence 58999999999999999887654322 111223333333333 2458999999999999964 46788999999999
Q ss_pred EEEccCCCChhHHHHHH----Hhh--hcCCCEEEEEeCCCCCCCCcc-hhhhhh-hhcccchhcc---CCcceEEEEeee
Q 005218 267 VVAADDGVMPQTLEAIA----HAN--AANVPIVVAINKCDKPAADPE-RVKNQL-GAEGLELEDW---GGKVQVVEVSAV 335 (708)
Q Consensus 267 VvDa~~g~~~q~~~~l~----~l~--~~~~piIvViNK~Dl~~~~~~-~~~~~l-~~~~~~~~~~---~~~~~vi~vSAk 335 (708)
|+|+++. .......|. .+. ..++|+++++||+|+...+.. ...+.+ .+.+..+... ...++++++||+
T Consensus 79 V~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 79 VIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp ECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 9999986 444444332 222 257899999999999643210 001111 1111112221 135789999999
Q ss_pred cCCCchhHHHHHHH
Q 005218 336 KKTGLDDLEVALLL 349 (708)
Q Consensus 336 tg~GI~~L~~~I~~ 349 (708)
+ .+|.+.|..|.+
T Consensus 158 d-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQ 170 (331)
T ss_dssp S-SHHHHHHHHHHT
T ss_pred C-CcHHHHHHHHHH
Confidence 8 589998887765
No 183
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.56 E-value=8.1e-15 Score=151.95 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=86.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhccc--------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGA-------- 258 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~-------- 258 (708)
+.++|+++|++|+|||||+|+|++.... ....+++|.+.....+.. ++..++||||||+.+|......++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 4579999999999999999999988864 466677887777777777 889999999999988765443332
Q ss_pred -ccccEEEEEEEccC-CCChhHHHHHHHhhh---c--CCCEEEEEeCCCCCCC
Q 005218 259 -AVTDIVVLVVAADD-GVMPQTLEAIAHANA---A--NVPIVVAINKCDKPAA 304 (708)
Q Consensus 259 -~~aDivllVvDa~~-g~~~q~~~~l~~l~~---~--~~piIvViNK~Dl~~~ 304 (708)
..+|++++|+|++. .........+..+.. . ..|+++|+||+|+...
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 27899999998875 333334444444432 2 2489999999999643
No 184
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.52 E-value=2.6e-14 Score=167.19 Aligned_cols=160 Identities=19% Similarity=0.245 Sum_probs=110.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccC-----------------------------------------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAG----------------------------------------------- 220 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~----------------------------------------------- 220 (708)
..|+|+++|++|+|||||+|+|++..+.....+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 457999999999999999999998776221111
Q ss_pred ----ceEEeeeEEEEEecCCeeEEEeeCCCcch-------------hhhhhhccc-ccccEEEEEEEccCCCChhHH-HH
Q 005218 221 ----GITQHMGAFVVGMSTGASITFLDTPGHAA-------------FSAMRKRGA-AVTDIVVLVVAADDGVMPQTL-EA 281 (708)
Q Consensus 221 ----gtT~di~~~~v~~~~g~~v~liDTpG~~~-------------f~~~~~~~~-~~aDivllVvDa~~g~~~q~~-~~ 281 (708)
+++.+.....+..++...++|+||||... +..+...++ ..+|++++|+|++.+...++. ..
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 12222233333344566799999999543 222333444 689999999999988777776 67
Q ss_pred HHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHH
Q 005218 282 IAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 282 l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
+..+...+.|+|+|+||+|+.+.... ....+.... .....+..+++++||++|.|+++|++.|...
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~~~~-~~~il~~~~--~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKL--LPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCTTCC-SHHHHTTCS--SCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEeCcccCCcchh-hHHHHHHHh--hhhhccCCceEEecccccccchhHHHHHHHH
Confidence 88888889999999999999753321 111111100 0001234688999999999999999999864
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=6.2e-15 Score=161.92 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=48.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec--------------------C---CeeEEEeeCCC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--------------------T---GASITFLDTPG 246 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~--------------------~---g~~v~liDTpG 246 (708)
.+|+|+|+||||||||+|+|++.....+..|++|++.......+. + ..++.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 479999999999999999999888555778888887655432110 1 36899999999
Q ss_pred cchh----hhhh---hcccccccEEEEEEEccCC
Q 005218 247 HAAF----SAMR---KRGAAVTDIVVLVVAADDG 273 (708)
Q Consensus 247 ~~~f----~~~~---~~~~~~aDivllVvDa~~g 273 (708)
+... ..+. ...++.+|++++|+|++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 1122 2457899999999999875
No 186
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.1e-14 Score=142.27 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=75.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc---cccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhccccc---
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA---KEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAV--- 260 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~---~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~--- 260 (708)
.+.++|+++|++|+|||||+++|.+..+.. +..++++.++ .+..+.||||||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 466899999999999999999999877543 3334444332 56789999999999887777666654
Q ss_pred -ccEEEEEEEcc-CCCC-hhHHHHHHHh-------hhcCCCEEEEEeCCCCCCC
Q 005218 261 -TDIVVLVVAAD-DGVM-PQTLEAIAHA-------NAANVPIVVAINKCDKPAA 304 (708)
Q Consensus 261 -aDivllVvDa~-~g~~-~q~~~~l~~l-------~~~~~piIvViNK~Dl~~~ 304 (708)
+|++++|+|++ +... ......+..+ ...++|+++|+||+|+.+.
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999998 3111 1111122111 1248999999999999653
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.50 E-value=2.9e-14 Score=154.58 Aligned_cols=156 Identities=13% Similarity=0.213 Sum_probs=104.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEe------------------------------------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQH------------------------------------------ 225 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~d------------------------------------------ 225 (708)
.-|.|+++|++|+|||||+|+|++..+.....+.+|+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 45699999999999999999999977633222222211
Q ss_pred ------------eeEEEEEecCCeeEEEeeCCCcchh-------------hhhhhcccccccEEEEEEEccC-C-CChhH
Q 005218 226 ------------MGAFVVGMSTGASITFLDTPGHAAF-------------SAMRKRGAAVTDIVVLVVAADD-G-VMPQT 278 (708)
Q Consensus 226 ------------i~~~~v~~~~g~~v~liDTpG~~~f-------------~~~~~~~~~~aDivllVvDa~~-g-~~~q~ 278 (708)
.....+..+....++||||||+..+ ..+...+++.+|++|+|+|+.+ . ...++
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 1111122224567999999998775 4455577899999999998754 2 23455
Q ss_pred HHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHH
Q 005218 279 LEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLL 349 (708)
Q Consensus 279 ~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~ 349 (708)
...+..+...+.|+|+|+||+|+...... ....+.... .....+++++|++++.|+++++..+..
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~~~~~~~~~-----~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGTD-AVEILEGRS-----FKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTCC-SHHHHTTSS-----SCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCccc-HHHHHcCcc-----ccccCCeEEEEECChHHhccCCCHHHH
Confidence 66777777778999999999999753221 112222111 112357899999999998877655443
No 188
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.49 E-value=4.8e-14 Score=146.66 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=85.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhh-------c--c
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRK-------R--G 257 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~-------~--~ 257 (708)
+.++|+++|++|+|||||+|+|++..+. .+..+++|.+.....+.. ++..+.||||||+.++..... + .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 4579999999999999999999988864 356677777766666666 889999999999977643211 1 1
Q ss_pred cccccEEEEEEEccC-CCChhHHHHHHHhhhc-C----CCEEEEEeCCCCCC
Q 005218 258 AAVTDIVVLVVAADD-GVMPQTLEAIAHANAA-N----VPIVVAINKCDKPA 303 (708)
Q Consensus 258 ~~~aDivllVvDa~~-g~~~q~~~~l~~l~~~-~----~piIvViNK~Dl~~ 303 (708)
...+|++++|+|++. .....+.+.+..+... + .|+++|+||+|+..
T Consensus 117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 347999999998865 3444444555544322 2 69999999999964
No 189
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.48 E-value=9.9e-15 Score=157.81 Aligned_cols=158 Identities=19% Similarity=0.232 Sum_probs=89.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC------cccc-cccC-------------------------------------ce
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT------SLVA-KEAG-------------------------------------GI 222 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~------~~~~-~~~~-------------------------------------gt 222 (708)
+.++.|+|+|+||||||||+|+|++. .+.+ ...+ |+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 45789999999999999999999852 1111 1111 22
Q ss_pred EEeeeEEE--EEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCC
Q 005218 223 TQHMGAFV--VGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCD 300 (708)
Q Consensus 223 T~di~~~~--v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~D 300 (708)
|++..... +.. .++.+.|+||||..... ......+|++++|+|++.+...+.... . -...|.++|+||+|
T Consensus 152 tr~~~~~~~~~~~-~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~--~--il~~~~ivVlNK~D 223 (349)
T 2www_A 152 TRTTNEAILLCEG-AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR--G--IIEMADLVAVTKSD 223 (349)
T ss_dssp CTTHHHHHHHHHH-TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCS
T ss_pred hHHHHHHHHhhcc-CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH--H--HHhcCCEEEEeeec
Confidence 22211100 012 67889999999964221 122468999999999987533222211 1 13568899999999
Q ss_pred CCCCCc-chhhhhhhhc-cc-chhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 301 KPAADP-ERVKNQLGAE-GL-ELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 301 l~~~~~-~~~~~~l~~~-~~-~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
+.+... ......+... .. .........+++++||++|.|+++|+++|.....
T Consensus 224 l~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 224 GDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 953110 0111111110 00 0000011357899999999999999999987653
No 190
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=7.4e-14 Score=151.63 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=78.7
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccc-ccc--------CceEEeeeEEEEEecCC--eeEEEeeCCCc-------chh
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVA-KEA--------GGITQHMGAFVVGMSTG--ASITFLDTPGH-------AAF 250 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~--------~gtT~di~~~~v~~~~g--~~v~liDTpG~-------~~f 250 (708)
.++|+++|++|+|||||+|+|.+..... ... ++++.+.....+.. .+ ..+++|||||+ +.|
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC--------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-CCcccceEEEEeccccccCccHHHH
Confidence 3679999999999999999987654322 221 33333333333332 33 37999999998 445
Q ss_pred hhhhh-------ccccc-------------ccEEEEEEEc-cCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchh
Q 005218 251 SAMRK-------RGAAV-------------TDIVVLVVAA-DDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERV 309 (708)
Q Consensus 251 ~~~~~-------~~~~~-------------aDivllVvDa-~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~ 309 (708)
..+.. .+++. .|+++|+++. .++....+...+..+. .++|+|+|+||+|+... ..+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~--~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTL--KER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCH--HHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCH--HHH
Confidence 44443 33322 2467777765 4556666666666553 67999999999999642 222
Q ss_pred hh---hhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 310 KN---QLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 310 ~~---~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
.. .+... ... ..++++++||++|.| ++.+..+...+
T Consensus 193 ~~~k~~i~~~---~~~--~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 193 ERLKKRILDE---IEE--HNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp HHHHHHHHHH---TTC--C-CCSCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHH---HHH--CCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 11 11111 111 136889999999999 77776666544
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.45 E-value=1.4e-13 Score=151.80 Aligned_cols=158 Identities=27% Similarity=0.228 Sum_probs=106.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh-------hhhhcccc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS-------AMRKRGAA 259 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~-------~~~~~~~~ 259 (708)
+.+..|+|+|++|||||||+++|.+....+...+.+|.+.....+...+...++++||||+.... ....+.+.
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 45678999999999999999999987666666666666655555665334889999999974321 11122346
Q ss_pred cccEEEEEEEccCCCChhHHHHH-HHhh-----hcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEe
Q 005218 260 VTDIVVLVVAADDGVMPQTLEAI-AHAN-----AANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 260 ~aDivllVvDa~~g~~~q~~~~l-~~l~-----~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vS 333 (708)
.+|.+++|+|+++ ........+ +.+. ..+.|.++++||+|+... .....+... +.. ...+++++|
T Consensus 235 ra~~lL~vvDls~-~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~---l~~--~g~~vi~iS 305 (416)
T 1udx_A 235 RTRVLLYVLDAAD-EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADA---LAR--EGLAVLPVS 305 (416)
T ss_dssp SSSEEEEEEETTS-CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHH---HHT--TTSCEEECC
T ss_pred HHHhhhEEeCCcc-CCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHH---HHh--cCCeEEEEE
Confidence 7999999999972 112222211 1111 136899999999999642 222222111 111 135799999
Q ss_pred eecCCCchhHHHHHHHHHHH
Q 005218 334 AVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~~~~ 353 (708)
|+++.|+++|+++|...+..
T Consensus 306 A~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 306 ALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHHh
Confidence 99999999999999987654
No 192
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.44 E-value=6.6e-14 Score=150.86 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=93.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc------Ccccc-cccCceEEee-----------------eEEEE-----------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ------TSLVA-KEAGGITQHM-----------------GAFVV----------- 231 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~------~~~~~-~~~~gtT~di-----------------~~~~v----------- 231 (708)
.++..|+++|++|+|||||++.|.+ ..+.+ ...+++|..- .....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 4578899999999999999999963 22222 2222222100 00000
Q ss_pred -----------EecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCC
Q 005218 232 -----------GMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCD 300 (708)
Q Consensus 232 -----------~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~D 300 (708)
.+ .++.+.||||||+..+... ....+|++++|+|++.+...+.... ...+.|.++|+||+|
T Consensus 134 ~~~~~~~~~~~~~-~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 134 SQRARELMLLCEA-AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHH-TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCC
T ss_pred HHHHHHHHHHhhc-cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCC
Confidence 02 5789999999998765543 2479999999999976532222111 112468899999999
Q ss_pred CCCC-Ccchhhhhhhhcccchhc--cCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 301 KPAA-DPERVKNQLGAEGLELED--WGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 301 l~~~-~~~~~~~~l~~~~~~~~~--~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
+.+. +.......+......+.. .....+++++||++|.|+++|+++|.....
T Consensus 206 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 206 GDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9642 111111122110000000 001357899999999999999999987653
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.43 E-value=9e-14 Score=150.61 Aligned_cols=158 Identities=20% Similarity=0.227 Sum_probs=94.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC------cccc-cccCceEEe-----------------eeEEE-------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT------SLVA-KEAGGITQH-----------------MGAFV------------- 230 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~------~~~~-~~~~gtT~d-----------------i~~~~------------- 230 (708)
+.++|+|+|+||+|||||+++|... .+.. ...++.+.. ...+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 5678999999999999999999532 1111 111111110 00000
Q ss_pred ---------EEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCC
Q 005218 231 ---------VGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDK 301 (708)
Q Consensus 231 ---------v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl 301 (708)
+.. .++.+.||||||...... ..+..+|++++|+|+..+...+... . ...+.|.++|+||+|+
T Consensus 158 ~~t~d~i~~~~~-~~~~~iiiDTpGi~~~~~---~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 158 RATRETVVLLEA-AGFDVILIETVGVGQSEV---AVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADG 229 (355)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEEECSCSSHHH---HHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCG
T ss_pred HHHHHHHHHHhh-CCCCEEEEeCCCCCcHHH---HHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCC
Confidence 011 568999999999644222 2247899999999987654332221 0 1134699999999998
Q ss_pred CCCC-cchhhhhhhhcccch--hccCCcceEEEEeeecCCCchhHHHHHHHHHHH
Q 005218 302 PAAD-PERVKNQLGAEGLEL--EDWGGKVQVVEVSAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 302 ~~~~-~~~~~~~l~~~~~~~--~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~~ 353 (708)
.... .......+....... .......|++++||++|.|+++|+++|......
T Consensus 230 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 230 EHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5321 111112222110000 001123689999999999999999999886543
No 194
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.9e-13 Score=147.03 Aligned_cols=110 Identities=23% Similarity=0.223 Sum_probs=85.4
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhh-------hhhhccccccc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFS-------AMRKRGAAVTD 262 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~-------~~~~~~~~~aD 262 (708)
.+|+|+|.||||||||+|+|++....+...|++|++.....+.+ .+.++.|+||||..... ......++.||
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 58999999999999999999998888889999999998888888 89999999999964321 12224568999
Q ss_pred EEEEEEEccCCCChhHHHHH-HHhh-----hcCCCEEEEEeCCCCC
Q 005218 263 IVVLVVAADDGVMPQTLEAI-AHAN-----AANVPIVVAINKCDKP 302 (708)
Q Consensus 263 ivllVvDa~~g~~~q~~~~l-~~l~-----~~~~piIvViNK~Dl~ 302 (708)
++++|+|++++.. +.+.+ ..+. ....|.++++||+|..
T Consensus 152 ~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 152 LLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred ccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 9999999987432 22222 1121 2357889999999974
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=9.1e-13 Score=142.40 Aligned_cols=84 Identities=23% Similarity=0.203 Sum_probs=61.6
Q ss_pred CCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC----------------CeeEEEeeCCCcchhhh
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST----------------GASITFLDTPGHAAFSA 252 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~----------------g~~v~liDTpG~~~f~~ 252 (708)
+.+|+|+|.||+|||||+|+|++........|++|.+.....+.+++ +..+.||||||+..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 46899999999999999999998886667778888876555555522 15799999999876532
Q ss_pred ----h---hhcccccccEEEEEEEccC
Q 005218 253 ----M---RKRGAAVTDIVVLVVAADD 272 (708)
Q Consensus 253 ----~---~~~~~~~aDivllVvDa~~ 272 (708)
+ ....++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 1234689999999999986
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.39 E-value=1.4e-13 Score=137.77 Aligned_cols=150 Identities=16% Similarity=0.174 Sum_probs=92.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc-----cc-ccccCceEEee------eEEEEEe-------------------cCC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS-----LV-AKEAGGITQHM------GAFVVGM-------------------STG 236 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~-----~~-~~~~~gtT~di------~~~~v~~-------------------~~g 236 (708)
+.++|+++|++|+|||||+++|+... .. +...++++.|. ......+ ..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45789999999999999999997642 11 11122221110 0000111 134
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCC---Ccchhhhhh
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA---DPERVKNQL 313 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~---~~~~~~~~l 313 (708)
..+.+|||||+-.... .....++.+++|+|++++....+ ......+.|+++|+||+|+.+. +.+.....+
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 181 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVVE----KHPEIFRVADLIVINKVALAEAVGADVEKMKADA 181 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHHH----HCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhhh----hhhhhhhcCCEEEEecccCCcchhhHHHHHHHHH
Confidence 6789999999511110 11125688999999988643322 1122246899999999998531 222222222
Q ss_pred hhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 314 GAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 314 ~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
.. .....+++++||++|.|+++|+++|...+
T Consensus 182 ~~-------~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 182 KL-------INPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HH-------HCTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HH-------hCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 21 12246899999999999999999998764
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.37 E-value=7.5e-13 Score=151.23 Aligned_cols=117 Identities=25% Similarity=0.332 Sum_probs=87.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccc---ccccCceEEeeeEEE---------------------------------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLV---AKEAGGITQHMGAFV--------------------------------- 230 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~---~~~~~gtT~di~~~~--------------------------------- 230 (708)
...++|+|+|++|+|||||+|+|++..+. .+..++||+......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998874 455555543211000
Q ss_pred ---EEecCC--eeEEEeeCCCcch-----------hhhhhhcccccccEEEEEEEccC-CCChhHHHHHHHhhhcCCCEE
Q 005218 231 ---VGMSTG--ASITFLDTPGHAA-----------FSAMRKRGAAVTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIV 293 (708)
Q Consensus 231 ---v~~~~g--~~v~liDTpG~~~-----------f~~~~~~~~~~aDivllVvDa~~-g~~~q~~~~l~~l~~~~~piI 293 (708)
+.++.. ..++||||||+.. |......++..+|++|+|+|+++ +...++...+..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 000000 3689999999865 44556667889999999999988 577788888888877788999
Q ss_pred EEEeCCCCCC
Q 005218 294 VAINKCDKPA 303 (708)
Q Consensus 294 vViNK~Dl~~ 303 (708)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999964
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.32 E-value=3.9e-13 Score=138.27 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=100.0
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhh-----cCcccc-cccCc-e---------------EEeeeEEEE------------
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALR-----QTSLVA-KEAGG-I---------------TQHMGAFVV------------ 231 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~-----~~~~~~-~~~~g-t---------------T~di~~~~v------------ 231 (708)
-.+.+.+++.|.+|+|||||++.|. +.++.. ...++ . +++......
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence 3466889999999999999999997 444432 21111 1 000000000
Q ss_pred -------------EecCCeeEEEeeCCCcchhhhhh------hcccccccEEEEEEEccCCCChhHHHHH-----HHhhh
Q 005218 232 -------------GMSTGASITFLDTPGHAAFSAMR------KRGAAVTDIVVLVVAADDGVMPQTLEAI-----AHANA 287 (708)
Q Consensus 232 -------------~~~~g~~v~liDTpG~~~f~~~~------~~~~~~aDivllVvDa~~g~~~q~~~~l-----~~l~~ 287 (708)
.+..++.+.||||||+..+.... ...+.. +++++|+|+............ .....
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 169 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR 169 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc
Confidence 00123589999999987654322 134566 899999999876555443211 22234
Q ss_pred cCCCEEEEEeCCCCCCCCc-chhhhhhhhcc-----c----------------chhccCCcceEEEEeeecCCCchhHHH
Q 005218 288 ANVPIVVAINKCDKPAADP-ERVKNQLGAEG-----L----------------ELEDWGGKVQVVEVSAVKKTGLDDLEV 345 (708)
Q Consensus 288 ~~~piIvViNK~Dl~~~~~-~~~~~~l~~~~-----~----------------~~~~~~~~~~vi~vSAktg~GI~~L~~ 345 (708)
.++|+++|+||+|+..... ..+.+.+.+.. + ....++...+++++||++|.|+++|++
T Consensus 170 ~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 170 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence 5789999999999864210 01111111000 0 012233335789999999999999999
Q ss_pred HHHHHHH
Q 005218 346 ALLLQAE 352 (708)
Q Consensus 346 ~I~~~~~ 352 (708)
+|.....
T Consensus 250 ~i~~~~~ 256 (262)
T 1yrb_A 250 LAYEHYC 256 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9987654
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.28 E-value=6.7e-12 Score=136.24 Aligned_cols=83 Identities=18% Similarity=0.156 Sum_probs=60.2
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEec--------------------CCeeEEEeeCCCcch
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMS--------------------TGASITFLDTPGHAA 249 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~--------------------~g~~v~liDTpG~~~ 249 (708)
++|+|+|+||+|||||+|+|++........+++|.+........+ .+..+.||||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 579999999999999999999775444555666655433333321 245799999999876
Q ss_pred hh-------hhhhcccccccEEEEEEEccC
Q 005218 250 FS-------AMRKRGAAVTDIVVLVVAADD 272 (708)
Q Consensus 250 f~-------~~~~~~~~~aDivllVvDa~~ 272 (708)
+. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 122245789999999999985
No 200
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.23 E-value=1.8e-12 Score=139.47 Aligned_cols=158 Identities=19% Similarity=0.205 Sum_probs=89.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc------Ccccc-cccCc-------------------------------------e
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ------TSLVA-KEAGG-------------------------------------I 222 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~------~~~~~-~~~~g-------------------------------------t 222 (708)
.++..++|+|++|+|||||+|.|.+ .++.+ +..++ +
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999973 33321 11111 1
Q ss_pred EEeeeEEE--EEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCC
Q 005218 223 TQHMGAFV--VGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCD 300 (708)
Q Consensus 223 T~di~~~~--v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~D 300 (708)
|++..... +.. .+..+.|+||||...-... ....+|++++|+|+..+...+ .+.. .....|.++++||+|
T Consensus 133 tr~~~e~~~~~~~-~~~~~iliDT~Gi~~~~~~---v~~~~d~vl~v~d~~~~~~~~---~i~~-~i~~~~~ivvlNK~D 204 (337)
T 2qm8_A 133 AAKTRETMLLCEA-AGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQ---GIKK-GIFELADMIAVNKAD 204 (337)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC---------CCT-THHHHCSEEEEECCS
T ss_pred HHHHHHHHHHHhc-CCCCEEEEECCCCCcchhh---HHhhCCEEEEEEcCCCcccHH---HHHH-HHhccccEEEEEchh
Confidence 11111000 111 5789999999997543211 236899999999986432111 0100 001246678889999
Q ss_pred CCCCCcc--hhhhhhhhcccchhcc--CCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 301 KPAADPE--RVKNQLGAEGLELEDW--GGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 301 l~~~~~~--~~~~~l~~~~~~~~~~--~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
+...... ...+.+.......... ....+++++||++|.|+++|++.|.....
T Consensus 205 l~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 205 DGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7431110 0111121100000000 01357899999999999999999987654
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.22 E-value=1.1e-11 Score=131.10 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=79.4
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC-ccccccc--------CceEEeeeEEEEEec-CCeeEEEeeCCCc-------chhh
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT-SLVAKEA--------GGITQHMGAFVVGMS-TGASITFLDTPGH-------AAFS 251 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~-~~~~~~~--------~gtT~di~~~~v~~~-~g~~v~liDTpG~-------~~f~ 251 (708)
.++|+++|++|+|||||+++|.+. .+..+.. +++..+.....+... ....+++|||||+ +.+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 368899999999999999998875 3322211 111112222222211 2357899999998 4443
Q ss_pred hhhh-------cccc-------------cccEEEEEEEccC-CCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhh
Q 005218 252 AMRK-------RGAA-------------VTDIVVLVVAADD-GVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVK 310 (708)
Q Consensus 252 ~~~~-------~~~~-------------~aDivllVvDa~~-g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~ 310 (708)
.+.. .+++ .+++++++++.+. ++.+...+.+..+. .+.|+++|+||+|+... .+..
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~--~e~~ 174 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTL--KERE 174 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCH--HHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCH--HHHH
Confidence 3322 2221 2344666666544 57777766666654 46799999999999642 1111
Q ss_pred ---hhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 311 ---NQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 311 ---~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
+...+. ...+ .++++++||++| |++++++.+...+.
T Consensus 175 ~~~~~~~~~---~~~~--~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 175 RLKKRILDE---IEEH--NIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHH---HHHT--TCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHH---HHHc--CCeEEecCCccc-cccHHHHHHHHHhh
Confidence 111111 1122 257899999999 99999998887653
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.21 E-value=2.1e-11 Score=122.30 Aligned_cols=151 Identities=19% Similarity=0.177 Sum_probs=87.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeee------------EEEEEec---------------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMG------------AFVVGMS--------------------- 234 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~------------~~~v~~~--------------------- 234 (708)
+.++|+++|++|+|||||+++|+...+.....+.+..++. ...+.++
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4579999999999999999999865432222222222221 1111111
Q ss_pred CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCC---Ccchhhh
Q 005218 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA---DPERVKN 311 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~---~~~~~~~ 311 (708)
.+..+.++||+|.-.. ....-...+..+.++|+..+...... .... .+.|.++|+||+|+.+. ..+....
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~ 189 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIEK-HPGI---MKTADLIVINKIDLADAVGADIKKMEN 189 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTTT-CHHH---HTTCSEEEEECGGGHHHHTCCHHHHHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHhh-hhhH---hhcCCEEEEeccccCchhHHHHHHHHH
Confidence 1226788888883111 01111234567788886543211110 0111 35789999999998531 1111111
Q ss_pred hhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 312 QLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 312 ~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
.+. .+....+++++||++|.|+++|+++|...+.
T Consensus 190 ~~~-------~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 190 DAK-------RINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHH-------HHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHH-------HhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 111 1123468999999999999999999987653
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.12 E-value=5.7e-11 Score=130.96 Aligned_cols=151 Identities=21% Similarity=0.334 Sum_probs=76.1
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccccccC--------ceEEeeeEEEEEec-CCeeEEEeeCCCcchhh-------hh
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVAKEAG--------GITQHMGAFVVGMS-TGASITFLDTPGHAAFS-------AM 253 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~--------gtT~di~~~~v~~~-~g~~v~liDTpG~~~f~-------~~ 253 (708)
++|+|+|++|+|||||+|.|.+..+.....+ ++..+.....+... ....+++|||||...+. .+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 5789999999999999999998766321111 11222211111110 12378999999976531 11
Q ss_pred ------------------hhccccc--ccEEEEEEEcc-CCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhh-
Q 005218 254 ------------------RKRGAAV--TDIVVLVVAAD-DGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKN- 311 (708)
Q Consensus 254 ------------------~~~~~~~--aDivllVvDa~-~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~- 311 (708)
....+.. ++++|++++.+ .++.+.+...+..+.. ++|+|+|+||+|+.. ..++..
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~--~~ev~~~ 188 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLT--PEECQQF 188 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCcc--HHHHHHH
Confidence 0112334 44566666665 5777777777777764 899999999999964 222211
Q ss_pred --hhhhcccchhccCCcceEEEEeeecCCCchhHHHHHH
Q 005218 312 --QLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALL 348 (708)
Q Consensus 312 --~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~ 348 (708)
.+... +... .++++++||+++.++++++..|.
T Consensus 189 k~~i~~~---~~~~--~i~~~~~sa~~~~~v~~~~~~l~ 222 (418)
T 2qag_C 189 KKQIMKE---IQEH--KIKIYEFPETDDEEENKLVKKIK 222 (418)
T ss_dssp HHHHHHH---HHHH--TCCCCCCC---------------
T ss_pred HHHHHHH---HHHc--CCeEEeCCCCCCcCHHHHHHHHH
Confidence 11111 1111 35788999999999998766554
No 204
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.09 E-value=9.5e-11 Score=125.03 Aligned_cols=129 Identities=11% Similarity=0.066 Sum_probs=85.9
Q ss_pred eeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEcc-------CCC----ChhHHHHHHHhhh----cC
Q 005218 225 HMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAAD-------DGV----MPQTLEAIAHANA----AN 289 (708)
Q Consensus 225 di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~-------~g~----~~q~~~~l~~l~~----~~ 289 (708)
.+....+.. ++..+.+|||+|++.+...+..+++.++++|+|+|.+ +.. ...+...+..+.. .+
T Consensus 156 Gi~~~~~~~-~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~ 234 (327)
T 3ohm_A 156 GIIEYPFDL-QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 234 (327)
T ss_dssp SEEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred eEEEEEEEe-eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence 344455556 7899999999999999999999999999999999886 321 1234444444432 47
Q ss_pred CCEEEEEeCCCCCCC-------------------Ccchhhhhhhhcccch-hccCCcceEEEEeeecCCCchhHHHHHHH
Q 005218 290 VPIVVAINKCDKPAA-------------------DPERVKNQLGAEGLEL-EDWGGKVQVVEVSAVKKTGLDDLEVALLL 349 (708)
Q Consensus 290 ~piIvViNK~Dl~~~-------------------~~~~~~~~l~~~~~~~-~~~~~~~~vi~vSAktg~GI~~L~~~I~~ 349 (708)
+|+++++||+|+... +.+...+.+...-... ......+.++++||+++.||+.+|+.+.+
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 899999999998421 1111111110000000 01113457889999999999999999988
Q ss_pred HHHHc
Q 005218 350 QAEMM 354 (708)
Q Consensus 350 ~~~~~ 354 (708)
.+-..
T Consensus 315 ~Il~~ 319 (327)
T 3ohm_A 315 TILQL 319 (327)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65443
No 205
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.02 E-value=1.6e-10 Score=124.84 Aligned_cols=128 Identities=11% Similarity=0.022 Sum_probs=87.7
Q ss_pred eeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCC-----------CChhHHHHHHHhhh----cC
Q 005218 225 HMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDG-----------VMPQTLEAIAHANA----AN 289 (708)
Q Consensus 225 di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g-----------~~~q~~~~l~~l~~----~~ 289 (708)
.+....+.+ ++..+.+|||+|++.+...+..+++.++++|+|+|.++- ...++...+..+.. .+
T Consensus 182 Gi~~~~~~~-~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~ 260 (353)
T 1cip_A 182 GIVETHFTF-KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 260 (353)
T ss_dssp SEEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred ceEEEEEee-CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC
Confidence 344455666 789999999999999999999999999999999999872 12334444444432 47
Q ss_pred CCEEEEEeCCCCCCC------------------Ccchhhhhhhhcccchhc--cCCcceEEEEeeecCCCchhHHHHHHH
Q 005218 290 VPIVVAINKCDKPAA------------------DPERVKNQLGAEGLELED--WGGKVQVVEVSAVKKTGLDDLEVALLL 349 (708)
Q Consensus 290 ~piIvViNK~Dl~~~------------------~~~~~~~~l~~~~~~~~~--~~~~~~vi~vSAktg~GI~~L~~~I~~ 349 (708)
+|+|+++||+|+... +.++....+......+.. ....+.++++||++|.||+++|+++..
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 899999999998411 111111111110000000 123568999999999999999999987
Q ss_pred HHHH
Q 005218 350 QAEM 353 (708)
Q Consensus 350 ~~~~ 353 (708)
.+..
T Consensus 341 ~i~~ 344 (353)
T 1cip_A 341 VIIK 344 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 206
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.94 E-value=7.2e-10 Score=120.93 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=54.8
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecC----------------CeeEEEeeCCCcch
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMST----------------GASITFLDTPGHAA 249 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~----------------g~~v~liDTpG~~~ 249 (708)
+..+.+|+|+|.||+|||||+|+|++..+..+..|++|.+.....+.+++ ...+.||||||+..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 45678999999999999999999999887777889999987777766532 23599999999876
Q ss_pred hhh-------hhhcccccccEEEEEEEccC
Q 005218 250 FSA-------MRKRGAAVTDIVVLVVAADD 272 (708)
Q Consensus 250 f~~-------~~~~~~~~aDivllVvDa~~ 272 (708)
+.. ....+++.+|++++|+|+++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 443 33456789999999999975
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.92 E-value=6.3e-10 Score=125.26 Aligned_cols=159 Identities=18% Similarity=0.132 Sum_probs=91.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhh------cCcccc-cc---cCce--------EE-eeeEEEE----------------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALR------QTSLVA-KE---AGGI--------TQ-HMGAFVV---------------- 231 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~------~~~~~~-~~---~~gt--------T~-di~~~~v---------------- 231 (708)
.++.+|+++|++|+|||||++.|. +.++.. +. .++. ++ .+..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 356789999999999999999997 444322 11 0100 00 0110110
Q ss_pred -EecCCeeEEEeeCCCcchhh----hhhhcc--cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCE-EEEEeCCCCCC
Q 005218 232 -GMSTGASITFLDTPGHAAFS----AMRKRG--AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPI-VVAINKCDKPA 303 (708)
Q Consensus 232 -~~~~g~~v~liDTpG~~~f~----~~~~~~--~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~pi-IvViNK~Dl~~ 303 (708)
.. .++.+.||||||..... ...... +..+|.+++|+|+..+.. ....+..+.. .+|+ ++|+||+|...
T Consensus 179 ~~~-~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 179 FKN-ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA 254 (504)
T ss_dssp HHH-TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC
T ss_pred HHH-CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc
Confidence 11 57889999999965321 111111 237899999999988643 3333443333 2685 89999999863
Q ss_pred CCcchhhhhhhhcccc---------hhccCCcceEEEEeeecCCC-chhHHHHHHHH
Q 005218 304 ADPERVKNQLGAEGLE---------LEDWGGKVQVVEVSAVKKTG-LDDLEVALLLQ 350 (708)
Q Consensus 304 ~~~~~~~~~l~~~~~~---------~~~~~~~~~vi~vSAktg~G-I~~L~~~I~~~ 350 (708)
.. ..........+.. +..+....|.+++|+++|.| +++|++++.+.
T Consensus 255 ~~-g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KG-GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CC-THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ch-HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 22 2121111111110 11111123556789999999 99999998764
No 208
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.91 E-value=6.5e-10 Score=120.45 Aligned_cols=155 Identities=13% Similarity=0.054 Sum_probs=89.1
Q ss_pred CCCCchHH--HHHhhcCcccccc-----cCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEc
Q 005218 198 VDHGKTSL--LDALRQTSLVAKE-----AGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAA 270 (708)
Q Consensus 198 ~nvGKSSL--ln~L~~~~~~~~~-----~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa 270 (708)
+++.|--| +.++...++..+. ....|..+....+.+ ++..+.+|||||++.+...+..+++.++++|+|+|.
T Consensus 156 ~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~-~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dl 234 (362)
T 1zcb_A 156 GESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEI-KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSS 234 (362)
T ss_dssp CTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEEEE-TTEEEEEEEECC-------CTTSCTTCCEEEEEEET
T ss_pred cccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEeee-CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEEC
Confidence 45555544 4555544443221 111232333445566 789999999999999999999999999999999999
Q ss_pred cCC-----------CChhHHHHHHHhhh----cCCCEEEEEeCCCCCCC-------------------Ccchhhhhhhhc
Q 005218 271 DDG-----------VMPQTLEAIAHANA----ANVPIVVAINKCDKPAA-------------------DPERVKNQLGAE 316 (708)
Q Consensus 271 ~~g-----------~~~q~~~~l~~l~~----~~~piIvViNK~Dl~~~-------------------~~~~~~~~l~~~ 316 (708)
++- ........+..+.. .++|+|+++||+|+... +.++....+...
T Consensus 235 s~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~ 314 (362)
T 1zcb_A 235 SEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVEC 314 (362)
T ss_dssp TCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHH
Confidence 872 12233334443332 47899999999998421 111111111000
Q ss_pred ccchhcc--CCcceEEEEeeecCCCchhHHHHHHHHHHH
Q 005218 317 GLELEDW--GGKVQVVEVSAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 317 ~~~~~~~--~~~~~vi~vSAktg~GI~~L~~~I~~~~~~ 353 (708)
-..+... ...+.++++||++|.||+++|+++...+..
T Consensus 315 f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 315 FRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 0000010 224678999999999999999999876543
No 209
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.89 E-value=5.2e-11 Score=129.53 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=77.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC------cccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhh-------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT------SLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR------- 254 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~------~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~------- 254 (708)
++.+|+++|.+|+|||||+|+|++. ....+..+|+|++.....+ +..+.++||||......+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL----ESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC----STTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe----CCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 4568999999999999999999876 3445788899988765433 2248999999964322111
Q ss_pred hccc---ccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCC
Q 005218 255 KRGA---AVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 255 ~~~~---~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~ 303 (708)
...+ ...|.+++++++........+..+..+...+.|+++++||+|...
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 1112 678999999998532111112223344556789999999999854
No 210
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.89 E-value=4.4e-10 Score=118.80 Aligned_cols=134 Identities=15% Similarity=0.100 Sum_probs=90.1
Q ss_pred HHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCC-ChhHHHH
Q 005218 204 SLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTLEA 281 (708)
Q Consensus 204 SLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~-~~q~~~~ 281 (708)
+|+.++....+. ....|++...+. ..+. .+..+.+||| ++.|..++..+++.+|++|+|+|+++.. .....+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~--~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPD--ETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECC--CSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEc--CCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 677777777776 455555552222 2222 2338999999 9999999999999999999999999864 3333332
Q ss_pred -HHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHH
Q 005218 282 -IAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALL 348 (708)
Q Consensus 282 -l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~ 348 (708)
+..+...++|+++|+||+||.+. ..+ ++..+....... . .+++++||++|.|++++++.+.
T Consensus 107 ~l~~~~~~~~piilv~NK~DL~~~--~~v-~~~~~~~~~~~~--~-~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 107 FLVLAEKNELETVMVINKMDLYDE--DDL-RKVRELEEIYSG--L-YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHTTCEEEEEECCGGGCCH--HHH-HHHHHHHHHHTT--T-SCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHCCCCEEEEEeHHHcCCc--hhH-HHHHHHHHHHhh--h-CcEEEEECCCCcCHHHHHHHhc
Confidence 33344568999999999999632 111 111111001111 1 5899999999999999998764
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.76 E-value=9.8e-10 Score=119.41 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=72.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc-------ccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhh------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS-------LVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMR------ 254 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~-------~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~------ 254 (708)
++.+|+++|.+|+|||||+|+|++.. ...+..+|+|++.....+. . .+.++||||......+.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--~--~~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD--E--ESSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS--S--SCEEEECCCBCCTTSGGGGSCHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec--C--CeEEEeCCCcCcHHHHHHHhhHH
Confidence 45789999999999999999998752 2347788999887654432 2 38999999964332111
Q ss_pred --hc--ccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCC
Q 005218 255 --KR--GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 255 --~~--~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~ 303 (708)
.. .....+.+++++++........+..+..+...+.|+++++||+|...
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 01 13567889999988432111122223334456789999999999864
No 212
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.76 E-value=6.5e-09 Score=111.33 Aligned_cols=130 Identities=9% Similarity=0.037 Sum_probs=86.4
Q ss_pred EEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccC-----------CCChhHHHHHHHhhh----
Q 005218 223 TQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD-----------GVMPQTLEAIAHANA---- 287 (708)
Q Consensus 223 T~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~-----------g~~~q~~~~l~~l~~---- 287 (708)
|..+....+.+ ++..+.+|||+|++.+...+..+++.++++|+|+|.++ .....+...+..+..
T Consensus 148 TiGi~~~~~~~-~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 148 TTGIHEYDFVV-KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCSCEEEEEES-SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeEEEEEEe-eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 33355556666 78999999999999999999999999999999999982 112233444443332
Q ss_pred cCCCEEEEEeCCCCCCC------------------Ccchhhhhhhhcc------cch--hcc----------CCcceEEE
Q 005218 288 ANVPIVVAINKCDKPAA------------------DPERVKNQLGAEG------LEL--EDW----------GGKVQVVE 331 (708)
Q Consensus 288 ~~~piIvViNK~Dl~~~------------------~~~~~~~~l~~~~------~~~--~~~----------~~~~~vi~ 331 (708)
.++|+|+++||+|+... +.++..+.+.... ... ... ...+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 47899999999998421 0011111111110 000 000 02467899
Q ss_pred EeeecCCCchhHHHHHHHHHHH
Q 005218 332 VSAVKKTGLDDLEVALLLQAEM 353 (708)
Q Consensus 332 vSAktg~GI~~L~~~I~~~~~~ 353 (708)
+||++..|++.+|+.+.+.+-.
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHHH
Confidence 9999999999999988876543
No 213
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.68 E-value=7.6e-08 Score=85.74 Aligned_cols=82 Identities=21% Similarity=0.394 Sum_probs=69.5
Q ss_pred eeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCe-EEEEEEEeeeeccccccceeccCCeEEE
Q 005218 592 TQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGE-VVFEGSCISLKREKQDVDTVAKGNECGL 670 (708)
Q Consensus 592 ~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~-~i~~g~i~slk~~k~~V~ev~kG~ecgi 670 (708)
....|+..|+++|.+-- + |.+.| +|..|.|++|.++ +++ .+ |+|.||+...+.|+++.+|++|+|
T Consensus 31 ~~~P~k~~ilp~~~~vF-g------pvivG-rVe~G~LK~G~~V----Pg~~~v--g~VkSIE~~~e~v~eA~~GdnVai 96 (116)
T 1xe1_A 31 KKPAGKVVVEEVVNIMG-K------DVIIG-TVESGMIGVGFKV----KGPSGI--GGIVRIERNREKVEFAIAGDRIGI 96 (116)
T ss_dssp SSCSEEEEEEEEEEETT-E------EEEEE-EEEEEEEETTCEE----ECSSCE--EEEEEEEETTEEESEEETTCEEEE
T ss_pred ecCcEEEEEEecCCeEE-C------CeeEE-EEeEEEEcCCCCc----CCCceE--EEEEEEEECCcCcCCcCCCCEEEE
Confidence 44568888999555443 2 68999 9999999999987 444 33 899999999999999999999999
Q ss_pred EEcccC-CCCCCCEEEEE
Q 005218 671 VIRDWH-DFQVGDIIQCL 687 (708)
Q Consensus 671 ~~~~~~-~~~~gD~ie~y 687 (708)
.+++.. ++++||++..|
T Consensus 97 ~Ikg~~~~I~~GdVLyv~ 114 (116)
T 1xe1_A 97 SIEGKIGKVKKGDVLEIY 114 (116)
T ss_dssp EEESCCCCCCTTCEEEEE
T ss_pred EEECCccccCCCcEEEEe
Confidence 999866 99999999887
No 214
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.68 E-value=1.3e-08 Score=111.50 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=82.7
Q ss_pred eeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccC----------CC-ChhHHHHHHHhhh----cCC
Q 005218 226 MGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADD----------GV-MPQTLEAIAHANA----ANV 290 (708)
Q Consensus 226 i~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~----------g~-~~q~~~~l~~l~~----~~~ 290 (708)
+....+.+ ++..+.+|||+|++.|...+..+++.++++|+|+|.++ .. .......+..+.. .++
T Consensus 207 i~~~~~~~-~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~ 285 (402)
T 1azs_C 207 IFETKFQV-DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 285 (402)
T ss_dssp EEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSC
T ss_pred eEEEEeec-CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCC
Confidence 33445566 78999999999999999999999999999999999986 11 1223333443332 468
Q ss_pred CEEEEEeCCCCCCCCc----chhhhhhh---------------------hcccch-----hcc-------CCcceEEEEe
Q 005218 291 PIVVAINKCDKPAADP----ERVKNQLG---------------------AEGLEL-----EDW-------GGKVQVVEVS 333 (708)
Q Consensus 291 piIvViNK~Dl~~~~~----~~~~~~l~---------------------~~~~~~-----~~~-------~~~~~vi~vS 333 (708)
|+|+|+||+|+..... ..+...+. +....+ ... ...+.++++|
T Consensus 286 piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TS 365 (402)
T 1azs_C 286 SVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTC 365 (402)
T ss_dssp CEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECC
T ss_pred eEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEE
Confidence 9999999999842100 00000000 000000 000 0235678999
Q ss_pred eecCCCchhHHHHHHHHHH
Q 005218 334 AVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 334 Aktg~GI~~L~~~I~~~~~ 352 (708)
|+++.||+++|+++...+.
T Consensus 366 A~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 366 AVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred eecCcCHHHHHHHHHHHHH
Confidence 9999999999999877654
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.67 E-value=2.5e-08 Score=108.94 Aligned_cols=87 Identities=18% Similarity=0.147 Sum_probs=69.0
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecC----------------CeeEEEeeCCCcc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMST----------------GASITFLDTPGHA 248 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~----------------g~~v~liDTpG~~ 248 (708)
.+++.+++|+|+||+|||||+|+|++... ..+..|++|++.....+.+++ +..+.+|||||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 45688999999999999999999999887 568889999988777776632 1468999999954
Q ss_pred h-------hhhhhhcccccccEEEEEEEccC
Q 005218 249 A-------FSAMRKRGAAVTDIVVLVVAADD 272 (708)
Q Consensus 249 ~-------f~~~~~~~~~~aDivllVvDa~~ 272 (708)
. +.......++.+|.+++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 22233345688999999999875
No 216
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.67 E-value=5e-09 Score=113.13 Aligned_cols=115 Identities=11% Similarity=0.036 Sum_probs=76.0
Q ss_pred CeeEEEeeCCCcchhhhhhhcccccccEEEEEEEcc----------CC-CChhHHHHHHHhhh----cCCCEEEEEeCCC
Q 005218 236 GASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAAD----------DG-VMPQTLEAIAHANA----ANVPIVVAINKCD 300 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~----------~g-~~~q~~~~l~~l~~----~~~piIvViNK~D 300 (708)
...+.+|||+|++.|..++..+++.++++|+|+|.+ +. ....+...+..+.. .++|+|+|+||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 478999999999999999999999999999999997 21 12233334443332 4789999999999
Q ss_pred CCCCCcchh--------------------hhhhhhcccchhcc-------------CCcceEEEEeeecCCCchhHHHHH
Q 005218 301 KPAADPERV--------------------KNQLGAEGLELEDW-------------GGKVQVVEVSAVKKTGLDDLEVAL 347 (708)
Q Consensus 301 l~~~~~~~~--------------------~~~l~~~~~~~~~~-------------~~~~~vi~vSAktg~GI~~L~~~I 347 (708)
+........ .++... +....+ .....++++||+++.||+++|+++
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~--~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYE--FVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHH--HHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHH--HHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 842100000 000000 000000 123457899999999999999998
Q ss_pred HHHHH
Q 005218 348 LLQAE 352 (708)
Q Consensus 348 ~~~~~ 352 (708)
.+.+.
T Consensus 340 ~~~I~ 344 (354)
T 2xtz_A 340 DETLR 344 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.58 E-value=1.3e-07 Score=104.02 Aligned_cols=115 Identities=16% Similarity=0.248 Sum_probs=72.7
Q ss_pred CCCCE--EEEEecCCCCchHHHHHhhcCcccc----cccCceEEeeeEEEEEecCC--eeEEEeeCCCcchh--------
Q 005218 187 PRPPV--VTVMGHVDHGKTSLLDALRQTSLVA----KEAGGITQHMGAFVVGMSTG--ASITFLDTPGHAAF-------- 250 (708)
Q Consensus 187 ~~~~~--V~IvG~~nvGKSSLln~L~~~~~~~----~~~~gtT~di~~~~v~~~~g--~~v~liDTpG~~~f-------- 250 (708)
++|-. ++|+|++|+|||||+|.|.+..+.. ...++.++....+.... .+ ..++++||+|....
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~~~~~~~~~ 116 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQINKEDSYK 116 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHSH
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-Cccccccchhhhhhhhhccccchhhh
Confidence 45555 9999999999999999998875421 11345555533333332 22 37899999995421
Q ss_pred ----------hhhhhc---------cccccc---EEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCC
Q 005218 251 ----------SAMRKR---------GAAVTD---IVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 251 ----------~~~~~~---------~~~~aD---ivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~ 303 (708)
...... ....++ +++|++|+..++.+.+.+.++.+. .++|+|+|+||+|...
T Consensus 117 ~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 117 PIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccc
Confidence 011111 112233 467788888888899988888886 7899999999999864
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.55 E-value=2.3e-07 Score=102.01 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=94.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc----ccccc-CceEEeeeEEEEEecCCeeEEEeeCCCcchh----hh-hhhcc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL----VAKEA-GGITQHMGAFVVGMSTGASITFLDTPGHAAF----SA-MRKRG 257 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~----~~~~~-~gtT~di~~~~v~~~~g~~v~liDTpG~~~f----~~-~~~~~ 257 (708)
.+..++|+|++|+|||||+|.|.+-.. .+... ..+|+. ...........++++|+||.... .. +....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~ 145 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 145 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchHHHHHHHHHHcC
Confidence 456899999999999999999988322 22111 112222 11222212236899999995321 11 11123
Q ss_pred cccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC-------CCCc---chhhhhhhhccc-chhcc-CC
Q 005218 258 AAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP-------AADP---ERVKNQLGAEGL-ELEDW-GG 325 (708)
Q Consensus 258 ~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~-------~~~~---~~~~~~l~~~~~-~~~~~-~~ 325 (708)
+...|..++ ++... .+.+....+..+...++|+++|.||.|+. .-|+ .++.+.+.+... .+... ..
T Consensus 146 L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 146 FYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444565555 66654 46777777888877899999999999974 1122 122222222110 00111 11
Q ss_pred cceEEEEee--ecCCCchhHHHHHHHHH
Q 005218 326 KVQVVEVSA--VKKTGLDDLEVALLLQA 351 (708)
Q Consensus 326 ~~~vi~vSA--ktg~GI~~L~~~I~~~~ 351 (708)
...++++|+ .++.|+++|.+.|....
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 246899999 67778999999987653
No 219
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.47 E-value=2e-07 Score=92.45 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=92.2
Q ss_pred CCCCCCEEEEEecC-CCCchHHHHHhhcCc-c-ccc-----cc----CceEEeeeEE-EEE---ec--------------
Q 005218 185 ILPRPPVVTVMGHV-DHGKTSLLDALRQTS-L-VAK-----EA----GGITQHMGAF-VVG---MS-------------- 234 (708)
Q Consensus 185 ~~~~~~~V~IvG~~-nvGKSSLln~L~~~~-~-~~~-----~~----~gtT~di~~~-~v~---~~-------------- 234 (708)
.....|++|+.|+- ..=+.+|+.+|.... . .+. .+ .|++-.+... .++ +-
T Consensus 12 ~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~ 91 (227)
T 3l82_B 12 IIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEH 91 (227)
T ss_dssp CCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC------------
T ss_pred ccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhh
Confidence 34567999999974 445668999987644 1 111 11 1333322111 000 00
Q ss_pred --CCeeEEEeeCC------CcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHH---H-hhh----cCCCEEEEEeC
Q 005218 235 --TGASITFLDTP------GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIA---H-ANA----ANVPIVVAINK 298 (708)
Q Consensus 235 --~g~~v~liDTp------G~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~---~-l~~----~~~piIvViNK 298 (708)
...++....+| |+..+..+|..|+..+|++|||||++|.......+.+. . +.. .+.|++|+.||
T Consensus 92 ~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANK 171 (227)
T 3l82_B 92 TSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCI 171 (227)
T ss_dssp -------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEE
T ss_pred hhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCC
Confidence 01123344455 68888899999999999999999999853323554442 2 221 47899999999
Q ss_pred C-CCCCC-CcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 299 C-DKPAA-DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 299 ~-Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
. |++++ +..++.+.+.-..+ .....+.+|||+||+|+.+-++||....
T Consensus 172 qqDlp~Ams~~EI~e~L~L~~l-----~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 172 SQGDVKRMPCFYLAHELHLNLL-----NHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp SSTTSCBCCHHHHHHHTTGGGG-----CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred CcCccCCCCHHHHHHHcCCcCC-----CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 5 77643 33344444432221 2345899999999999999999997643
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.43 E-value=4.3e-08 Score=108.57 Aligned_cols=157 Identities=17% Similarity=0.109 Sum_probs=86.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC------cccc-c------------------------ccCceEEeeeE---EEE-E
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT------SLVA-K------------------------EAGGITQHMGA---FVV-G 232 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~------~~~~-~------------------------~~~gtT~di~~---~~v-~ 232 (708)
++..|+++|++|+||||+++.|... .+.. . ..+++|+|... ..+ .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998652 1111 0 00113333110 000 1
Q ss_pred ecCCeeEEEeeCCCcchhhh-----hh-hcccccccEEEEEEEccCCCChhHHHHHHHhhhcCC-C-EEEEEeCCCCCCC
Q 005218 233 MSTGASITFLDTPGHAAFSA-----MR-KRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANV-P-IVVAINKCDKPAA 304 (708)
Q Consensus 233 ~~~g~~v~liDTpG~~~f~~-----~~-~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~-p-iIvViNK~Dl~~~ 304 (708)
. .++.+.|+||||...... +. ...+..+|.+++|+|+..+. .....+.... ... | ..+|+||+|....
T Consensus 178 ~-~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 178 F-KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp T-SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSCST
T ss_pred h-hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCccc
Confidence 2 568899999999654211 11 12334789999999998763 2333333332 345 6 8999999998532
Q ss_pred Ccchhhhhhhhcccc---------hhccCCcceEEEEeeecCCC-chhHHHHHHH
Q 005218 305 DPERVKNQLGAEGLE---------LEDWGGKVQVVEVSAVKKTG-LDDLEVALLL 349 (708)
Q Consensus 305 ~~~~~~~~l~~~~~~---------~~~~~~~~~vi~vSAktg~G-I~~L~~~I~~ 349 (708)
...........+.. +.......|..++|+..|.| +..|++.+..
T Consensus 254 -~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~ 307 (432)
T 2v3c_C 254 -GGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED 307 (432)
T ss_dssp -THHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTS
T ss_pred -hHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 12122211111110 01111122445677777777 7766665543
No 221
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.39 E-value=1.5e-07 Score=107.79 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=62.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEE------ecCCeeEEEeeCCCcchhhh------hhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVG------MSTGASITFLDTPGHAAFSA------MRK 255 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~------~~~g~~v~liDTpG~~~f~~------~~~ 255 (708)
+.++|+|+|.||+|||||+|+|++..... ..+++|++.....+. ...+..+.|+||||...... ...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~ 115 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI 115 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence 45789999999999999999999887543 344444332222221 12578899999999754322 000
Q ss_pred cccc--cccEEEEEEEccCCCChhHHHHHHHh
Q 005218 256 RGAA--VTDIVVLVVAADDGVMPQTLEAIAHA 285 (708)
Q Consensus 256 ~~~~--~aDivllVvDa~~g~~~q~~~~l~~l 285 (708)
..+. .++ ++|||+..++..++...+..+
T Consensus 116 fala~llss--~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 116 FALAVLLSS--TFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp HHHHHHHCS--EEEEEEESCSSHHHHHTTHHH
T ss_pred HHHHHHhcC--eEEEECCCCccHHHHHHHHHH
Confidence 0111 133 678898888888888776554
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.36 E-value=1.9e-07 Score=98.52 Aligned_cols=97 Identities=20% Similarity=0.127 Sum_probs=65.8
Q ss_pred cchhhhhhhcccccccEEEEEEEccCCC-ChhHH-HHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhccC
Q 005218 247 HAAFSAMRKRGAAVTDIVVLVVAADDGV-MPQTL-EAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELEDWG 324 (708)
Q Consensus 247 ~~~f~~~~~~~~~~aDivllVvDa~~g~-~~q~~-~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~~~ 324 (708)
++.+..+...+++++|++++|+|++++. ....+ ..+..+...++|+++|+||+||.+............. ...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~---~~~~- 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISI---YRDA- 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHH---HHHT-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHH---HHHC-
Confidence 6677777777899999999999999764 44433 2334455578999999999999642100001111110 1111
Q ss_pred CcceEEEEeeecCCCchhHHHHHH
Q 005218 325 GKVQVVEVSAVKKTGLDDLEVALL 348 (708)
Q Consensus 325 ~~~~vi~vSAktg~GI~~L~~~I~ 348 (708)
.++++++||++|.|+++|++.+.
T Consensus 142 -g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 -GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHTT
T ss_pred -CCeEEEEECCCCCCHHHHHhhcc
Confidence 24899999999999999988764
No 223
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.35 E-value=4.6e-07 Score=94.13 Aligned_cols=112 Identities=20% Similarity=0.262 Sum_probs=71.1
Q ss_pred CEEEEEecCCCCchHHHHHhhcCcccc-c-------ccCceEEeeeEEEEEec-C--CeeEEEeeCCCcchh--------
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLVA-K-------EAGGITQHMGAFVVGMS-T--GASITFLDTPGHAAF-------- 250 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~~-~-------~~~gtT~di~~~~v~~~-~--g~~v~liDTpG~~~f-------- 250 (708)
++++++|++|+|||||+|.|.+..... + ..+.++.. ....+... . ...++++|+||....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~-~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEI-KAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSC-CEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceee-eeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 579999999999999999998754321 1 11111110 00111111 1 236899999994210
Q ss_pred -----h-----hhhh----------cccccccEEEEEEEcc-CCCChhHHHHHHHhhhcCCCEEEEEeCCCCCC
Q 005218 251 -----S-----AMRK----------RGAAVTDIVVLVVAAD-DGVMPQTLEAIAHANAANVPIVVAINKCDKPA 303 (708)
Q Consensus 251 -----~-----~~~~----------~~~~~aDivllVvDa~-~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~ 303 (708)
. .... -.+..++++++++|.. .+..+.+.+.+..+... +++|+|+||+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 0 0000 1134568889999954 78899999999888776 99999999999864
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.35 E-value=2.5e-07 Score=96.74 Aligned_cols=59 Identities=27% Similarity=0.463 Sum_probs=38.4
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcc-cccccCceEEeeeEEEEEecCCeeEEEeeCCCcc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL-VAKEAGGITQHMGAFVVGMSTGASITFLDTPGHA 248 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~-~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~ 248 (708)
.+++++|+++|.||+|||||+|+|.+... ..+..+|+|++..... . +..+.++||||..
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~--~~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--V--GKELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE--E--TTTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE--e--CCCEEEEECcCcC
Confidence 45678999999999999999999998874 4578889999876432 2 3479999999964
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.23 E-value=2.3e-06 Score=94.54 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=79.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc------Ccccc-c---c-------------cCceEEeee---EEEEE--------e
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ------TSLVA-K---E-------------AGGITQHMG---AFVVG--------M 233 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~------~~~~~-~---~-------------~~gtT~di~---~~~v~--------~ 233 (708)
+|..|+++|++|+||||++..|.. .++.. . . ..++..... ..... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999862 22211 0 0 011110000 00000 0
Q ss_pred -cCCeeEEEeeCCCcchhhh-----hhh-cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc
Q 005218 234 -STGASITFLDTPGHAAFSA-----MRK-RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP 306 (708)
Q Consensus 234 -~~g~~v~liDTpG~~~f~~-----~~~-~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~ 306 (708)
..++.+.|+||||...... +.. ..+..+|.++||+|+..+. .....+......-.+..+|+||+|.....
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~~g- 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSAKG- 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCSSH-
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCcccc-
Confidence 0458899999999432211 111 2234579999999998752 33344444443334577999999985311
Q ss_pred chhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 307 ERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
........ . ...|+.+++ +|+++++|
T Consensus 256 G~~ls~~~-------~--~g~PI~fig--~Ge~vddL 281 (443)
T 3dm5_A 256 GGALSAVA-------A--TGAPIKFIG--TGEKIDDI 281 (443)
T ss_dssp HHHHHHHH-------T--TCCCEEEEE--CSSSTTCE
T ss_pred cHHHHHHH-------H--HCCCEEEEE--cCCChHHh
Confidence 11111111 1 135788887 49888765
No 226
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.19 E-value=1.8e-06 Score=89.53 Aligned_cols=102 Identities=13% Similarity=0.029 Sum_probs=70.9
Q ss_pred CCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHH----Hhh----hcCCCEEEEEeC-CCCCCC-Ccchhhhhhh
Q 005218 245 PGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIA----HAN----AANVPIVVAINK-CDKPAA-DPERVKNQLG 314 (708)
Q Consensus 245 pG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~----~l~----~~~~piIvViNK-~Dl~~~-~~~~~~~~l~ 314 (708)
.|+..+..++..|+.++|++|||||++|..-....+.+. .+. ..+.|++|+.|| .|++++ +..++.+.+.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~ 274 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 274 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence 367788889999999999999999998853222333322 221 258999999996 588654 3334444443
Q ss_pred hcccchhccCCcceEEEEeeecCCCchhHHHHHHHHH
Q 005218 315 AEGLELEDWGGKVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 315 ~~~~~~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
-..+ .....+.+|||+||+|+.+-++||....
T Consensus 275 L~~l-----~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 275 LNLL-----NHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp GGGG-----CSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred CccC-----CCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 2221 2345799999999999999999998754
No 227
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.07 E-value=3.2e-06 Score=88.26 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=66.2
Q ss_pred EeeCCCcc-hhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccc
Q 005218 241 FLDTPGHA-AFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLE 319 (708)
Q Consensus 241 liDTpG~~-~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~ 319 (708)
+-+.|||. .........+..+|++++|+|+.++........-+.+ .++|.++|+||+|+.+ .......+. +
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~--~~~~~~~~~-~--- 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD--AAVTQQWKE-H--- 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC--HHHHHHHHH-H---
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC--HHHHHHHHH-H---
Confidence 44679986 3455666788999999999999987665433322333 5799999999999964 222111111 1
Q ss_pred hhccCCcceEEEEeeecCCCchhHHHHHHHHHH
Q 005218 320 LEDWGGKVQVVEVSAVKKTGLDDLEVALLLQAE 352 (708)
Q Consensus 320 ~~~~~~~~~vi~vSAktg~GI~~L~~~I~~~~~ 352 (708)
++. ...+++++||++|.|+++|++.+.....
T Consensus 75 ~~~--~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 75 FEN--QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHT--TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHh--cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 111 1247899999999999999998877654
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.02 E-value=2.1e-06 Score=88.68 Aligned_cols=57 Identities=25% Similarity=0.398 Sum_probs=39.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcCccc-ccccCceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTSLV-AKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~~~-~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
.+++++|.||+|||||+|+|.+.... .+..+|+|++.... . -+..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~--~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWF--S--LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEE--E--CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEE--E--eCCCEEEEECCCcccC
Confidence 79999999999999999999987764 46778888876432 2 2457899999997643
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.00 E-value=6.2e-06 Score=91.03 Aligned_cols=142 Identities=20% Similarity=0.171 Sum_probs=78.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc------Ccccc-c----------------ccCceEEeee---EE-------EEE-e
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ------TSLVA-K----------------EAGGITQHMG---AF-------VVG-M 233 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~------~~~~~-~----------------~~~gtT~di~---~~-------~v~-~ 233 (708)
++..|+++|++|+||||++..|.. ..+.. . ...+...... .. .+. .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 467889999999999999999852 22211 0 0011110000 00 000 0
Q ss_pred -cCCeeEEEeeCCCcch--h----hhhhhc--ccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCC
Q 005218 234 -STGASITFLDTPGHAA--F----SAMRKR--GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAA 304 (708)
Q Consensus 234 -~~g~~v~liDTpG~~~--f----~~~~~~--~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~ 304 (708)
..++.+.|+||||... . ...... .....|.++||+|+..+. +....+......-.+..+++||+|...
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPIGSVIITKMDGTA- 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSSEEEEEECGGGCS-
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCCcEEEEecccccc-
Confidence 0367899999999533 1 111111 123468999999998752 233444444433356889999999742
Q ss_pred CcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 305 DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
............ ..|+.+++. |+++++|
T Consensus 253 ~~G~als~~~~~---------g~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 253 KGGGALSAVVAT---------GATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CHHHHHHHHHHH---------TCEEEEEEC--CSSSSCE
T ss_pred cchHHHHHHHHH---------CCCEEEEEC--CCChHhC
Confidence 111111111111 358888874 8888654
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.97 E-value=8.3e-06 Score=86.98 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=78.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCccccc-ccCceEEe----------------eeEEEEEe----------------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAK-EAGGITQH----------------MGAFVVGM---------------- 233 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~-~~~gtT~d----------------i~~~~v~~---------------- 233 (708)
.+|-.++++|++|+|||||++.|.+.....+ ...-.+.| +....+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 4577899999999999999999864211100 00000000 00000000
Q ss_pred --cCCeeEEEeeCCCcchhhhhhhc------ccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCC
Q 005218 234 --STGASITFLDTPGHAAFSAMRKR------GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAAD 305 (708)
Q Consensus 234 --~~g~~v~liDTpG~~~f~~~~~~------~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~ 305 (708)
..++.+.++||+|.......... ..-..|-.++++|+..+ .+..+.+..+...--..++++||+|... .
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~~a-~ 283 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDADA-R 283 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGGCS-C
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCCcc-c
Confidence 02456788999996432211111 12247889999998875 2444444444422223478889999632 2
Q ss_pred cchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 306 PERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
........... ..|+.+++ +|+++++|
T Consensus 284 ~G~~l~~~~~~---------~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 GGAALSISYVI---------DAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CHHHHHHHHHH---------TCCEEEEE--CSSSTTCE
T ss_pred hhHHHHHHHHH---------CCCEEEEe--CCCCcccc
Confidence 22222222211 24788887 89998776
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.90 E-value=1.9e-05 Score=83.11 Aligned_cols=141 Identities=21% Similarity=0.229 Sum_probs=80.5
Q ss_pred CCEEEEEecCCCCchHHHHHhhc------Ccccc--ccc--C-------------ceE-------EeeeE---EEE-Eec
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQ------TSLVA--KEA--G-------------GIT-------QHMGA---FVV-GMS 234 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~------~~~~~--~~~--~-------------gtT-------~di~~---~~v-~~~ 234 (708)
+..++++|++|+||||++..|.. .++.. .+. + ++. .+... ..+ ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999852 22211 000 0 000 00000 000 001
Q ss_pred -CCeeEEEeeCCCcch--hhh-hhh-----cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCC
Q 005218 235 -TGASITFLDTPGHAA--FSA-MRK-----RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAA 304 (708)
Q Consensus 235 -~g~~v~liDTpG~~~--f~~-~~~-----~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~ 304 (708)
.++.+.|+||||... ... +.. ..+..+|.+++|+|+..+ .+....+..+.. ..| ..+|+||+|...
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~- 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA- 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT-
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc-
Confidence 567899999999665 321 111 234578999999999864 334444444433 467 788999999742
Q ss_pred CcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 305 DPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
.......... . ...|+.+++ +|+++++|.
T Consensus 254 ~~g~~~~~~~-------~--~~~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 254 KGGGALSAVA-------A--TGATIKFIG--TGEKIDELE 282 (297)
T ss_dssp THHHHHHHHH-------T--TTCCEEEEE--CSSSTTCEE
T ss_pred chHHHHHHHH-------H--HCcCEEEEe--CCCChhhcc
Confidence 1111111111 1 125777776 788888764
No 232
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.86 E-value=8.6e-06 Score=88.31 Aligned_cols=105 Identities=22% Similarity=0.159 Sum_probs=65.7
Q ss_pred EeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc--chhhhhhhhccc
Q 005218 241 FLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGL 318 (708)
Q Consensus 241 liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~ 318 (708)
-++++ +++|..........++++++|+|+++... .+...+.... .++|+++|+||+|+.+... +...+.+...
T Consensus 53 ~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~-s~~~~l~~~l-~~~piilV~NK~DLl~~~~~~~~~~~~l~~~-- 127 (369)
T 3ec1_A 53 DVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG-SFIPGLPRFA-ADNPILLVGNKADLLPRSVKYPKLLRWMRRM-- 127 (369)
T ss_dssp -------CHHHHHHHHHHHHCCEEEEEEETTCSGG-GCCSSHHHHC-TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH--
T ss_pred CCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC-chhhHHHHHh-CCCCEEEEEEChhcCCCccCHHHHHHHHHHH--
Confidence 34444 78888888888899999999999998432 2222222221 3789999999999965321 1222221111
Q ss_pred chhccCC-cceEEEEeeecCCCchhHHHHHHHHH
Q 005218 319 ELEDWGG-KVQVVEVSAVKKTGLDDLEVALLLQA 351 (708)
Q Consensus 319 ~~~~~~~-~~~vi~vSAktg~GI~~L~~~I~~~~ 351 (708)
....+. ..+++++||++|.|+++|++.|....
T Consensus 128 -~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 128 -AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp -HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred -HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 111111 13689999999999999999987653
No 233
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.78 E-value=0.00025 Score=77.62 Aligned_cols=184 Identities=14% Similarity=0.217 Sum_probs=119.4
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHh--hHHhHHhcCC--EEEEeCCCCCc----hh-------HHHHH
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQS--DVDLAQACGA--CIVGFNVKSPP----TS-------VSQAA 558 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~s--Dv~~A~~~~a--~Il~Fnv~~~~----~~-------~~~~a 558 (708)
.|+-|.-+-....+..+..-++-+=|+.+.-|...+. -+.++...+. +|+..|= .+. +. +.+++
T Consensus 80 iDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK-~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNK-VDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp EECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEEC-GGGCCCHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEC-ccccCcHHHHHHHHHHHHHHH
Confidence 4777776656666666667777788888877753222 2233444453 3556652 221 11 12233
Q ss_pred HHcC-----CeEEEcchhhh-------------------hHHHHHHHHhhcCC-CceeeeeeeceeEeeEEEeCCCCCCC
Q 005218 559 TQAG-----IKILMHSIIYH-------------------LLDDFGNLVVDKAP-GTFETQVAGEAEVLNIFELKGRSKAK 613 (708)
Q Consensus 559 ~~~~-----V~i~~~~iIY~-------------------L~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~~~ 613 (708)
+..+ +.++.-+-... -++++.+.+...++ |.....-.-.+.|..+|+++++|
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G--- 235 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRG--- 235 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTE---
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCc---
Confidence 3344 55664332211 14444445555454 22222222345667899988876
Q ss_pred CCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEE
Q 005218 614 GDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQ 685 (708)
Q Consensus 614 ~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie 685 (708)
+|+..+|.+|.++.|+.+.+...+.--...+|.||+.++++|+++..|+.||+.+.+. .++..||+|-
T Consensus 236 ----~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~ 305 (405)
T 2c78_A 236 ----TVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLA 305 (405)
T ss_dssp ----EEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEE
T ss_pred ----eEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEE
Confidence 8899999999999999999998763112469999999999999999999999999865 7999999984
No 234
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.76 E-value=4.4e-05 Score=88.14 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=42.7
Q ss_pred eeEEEeeCCCcch-------------hhhhhhcccc-cccEEEEEEEccCCCC-hhHHHHHHHhhhcCCCEEEEEeCCCC
Q 005218 237 ASITFLDTPGHAA-------------FSAMRKRGAA-VTDIVVLVVAADDGVM-PQTLEAIAHANAANVPIVVAINKCDK 301 (708)
Q Consensus 237 ~~v~liDTpG~~~-------------f~~~~~~~~~-~aDivllVvDa~~g~~-~q~~~~l~~l~~~~~piIvViNK~Dl 301 (708)
..+.|+|.||... ...+...++. ...+++++++++.... ......+..+...+.+.|+|+||+|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 4699999998432 1122233343 3466777777654433 33456666666678899999999999
Q ss_pred CCC
Q 005218 302 PAA 304 (708)
Q Consensus 302 ~~~ 304 (708)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 743
No 235
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.76 E-value=1.2e-05 Score=87.11 Aligned_cols=100 Identities=20% Similarity=0.154 Sum_probs=64.9
Q ss_pred CcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCc--chhhhhhhhcccchhcc
Q 005218 246 GHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADP--ERVKNQLGAEGLELEDW 323 (708)
Q Consensus 246 G~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~--~~~~~~l~~~~~~~~~~ 323 (708)
..++|........+.+|++++|+|+++.. ..+...+.... .++|+++|+||+|+..... +...+.+... ....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~---~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-GSWLPGLHRFV-GNNKVLLVGNKADLIPKSVKHDKVKHWMRYS---AKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-HHCCTTHHHHS-SSSCEEEEEECGGGSCTTSCHHHHHHHHHHH---HHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-ccHHHHHHHHh-CCCcEEEEEEChhcCCcccCHHHHHHHHHHH---HHHc
Confidence 35788888888888999999999998721 22222222222 3789999999999964321 1122211110 1111
Q ss_pred CC-cceEEEEeeecCCCchhHHHHHHHH
Q 005218 324 GG-KVQVVEVSAVKKTGLDDLEVALLLQ 350 (708)
Q Consensus 324 ~~-~~~vi~vSAktg~GI~~L~~~I~~~ 350 (708)
+. ..+++++||++|.|+++|++.|...
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 11 1278999999999999999998764
No 236
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.75 E-value=0.00063 Score=74.26 Aligned_cols=183 Identities=17% Similarity=0.247 Sum_probs=122.0
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCH--hhHHhHHhcCCE--EEEeCCCCCc----hh-------HHHHH
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQ--SDVDLAQACGAC--IVGFNVKSPP----TS-------VSQAA 558 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~--sDv~~A~~~~a~--Il~Fnv~~~~----~~-------~~~~a 558 (708)
.|+-|..+-+...+..+..-++-+=|+.+.-|...+ .-+.++...+-. |+..| |++. +. +.+++
T Consensus 71 iDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviN-K~Dl~~~~~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 71 TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVN-KADAVQDSEMVELVELEIRELL 149 (397)
T ss_dssp EECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEE-CGGGCSCHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEE-CcccCCCHHHHHHHHHHHHHHH
Confidence 488888776777777777777888888887775432 223444445543 45555 2221 11 12334
Q ss_pred HHcC-----CeEEEcchhhh----------h-HHHHHHHHhhcCCC-ceeeeeeeceeEeeEEEeCCCCCCCCCCceEEE
Q 005218 559 TQAG-----IKILMHSIIYH----------L-LDDFGNLVVDKAPG-TFETQVAGEAEVLNIFELKGRSKAKGDDVKIAG 621 (708)
Q Consensus 559 ~~~~-----V~i~~~~iIY~----------L-~d~~~~~~~~~~~~-~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaG 621 (708)
+..+ +.++.-+-... = ++++-+.+...+++ .....-.-.+-|..+|.++++| +|+.
T Consensus 150 ~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G-------~v~~ 222 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRG-------TVVT 222 (397)
T ss_dssp HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTE-------EEEE
T ss_pred HHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCce-------EEEE
Confidence 4444 56665443321 1 34444444444442 2222222345677899998877 8888
Q ss_pred EEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEE
Q 005218 622 CRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQ 685 (708)
Q Consensus 622 c~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie 685 (708)
.+|.+|.++.|+.+.++..+.. ...+|.||+.+.++++++..|+.||+.+.+. .+++.||+|-
T Consensus 223 g~v~~G~l~~gd~v~~~~~~~~-~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~ 287 (397)
T 1d2e_A 223 GTLERGILKKGDECEFLGHSKN-IRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMA 287 (397)
T ss_dssp EECCBSEEETTCEEEEEETTEE-EEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred EEEeeceEeCCCEEEEeCCCCC-eEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEe
Confidence 9999999999999988876422 2469999999999999999999999999865 6899999984
No 237
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.66 E-value=0.00032 Score=75.99 Aligned_cols=182 Identities=13% Similarity=0.163 Sum_probs=120.6
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCCC--CHhhHHhHHhcC-CE-EEEeCCCCCch--h----HHHHH---HH
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSV--TQSDVDLAQACG-AC-IVGFNVKSPPT--S----VSQAA---TQ 560 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~i--t~sDv~~A~~~~-a~-Il~Fnv~~~~~--~----~~~~a---~~ 560 (708)
.|+-|.-+=+...+..+..-++-+=|+. .-|.. |..-+.++...+ .. |+..|-|++.+ . .+++. +.
T Consensus 65 iDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl~~~~~~~~~~~i~~~l~~ 143 (370)
T 2elf_A 65 VDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSG 143 (370)
T ss_dssp EECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGSCHHHHHHHHHHHHHHTTT
T ss_pred EECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCCCHHHHHHHHHHHHHHHHh
Confidence 4777766556666666666677777777 66665 444455566555 33 77887333321 0 01111 11
Q ss_pred ---cCCeEEE----------cchhhhhHHHHHHHHhhcCCCcee-eeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEe
Q 005218 561 ---AGIKILM----------HSIIYHLLDDFGNLVVDKAPGTFE-TQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVID 626 (708)
Q Consensus 561 ---~~V~i~~----------~~iIY~L~d~~~~~~~~~~~~~~~-~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~ 626 (708)
..+.++. +.-|-+|++.+.+++....++... ....-+.-|..+|++++.| +++..+|.+
T Consensus 144 ~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G-------~v~~g~v~~ 216 (370)
T 2elf_A 144 TVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKG-------CVVLGVVKQ 216 (370)
T ss_dssp STTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC----------CEEEEEEEE
T ss_pred cCCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCc-------eEEEEEEEC
Confidence 1467877 666777777776665432111000 0001133477899988776 677779999
Q ss_pred cEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEEE
Q 005218 627 GCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQC 686 (708)
Q Consensus 627 G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie~ 686 (708)
|.++.|+.+.+...+.. .+|.||+.+.++|+++..|+-||+.+.+. .+++.||+|-.
T Consensus 217 G~l~~gd~v~~~p~~~~---~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 217 GISKDKDKTKIFPLDRD---IEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp SEEETTCEEEEETTTEE---EEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CEEeeCCEEEECCCCcE---EEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 99999999999888754 59999999999999999999999999874 58999999954
No 238
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.50 E-value=1.3e-05 Score=82.84 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=57.2
Q ss_pred CCCcchhh-hhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCCCCCcchhhhhhhhcccchhc
Q 005218 244 TPGHAAFS-AMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKPAADPERVKNQLGAEGLELED 322 (708)
Q Consensus 244 TpG~~~f~-~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~~~~~~~~~~~l~~~~~~~~~ 322 (708)
-|||.... ......+..+|++++|+|+.++....... +. +. ++|.++|+||+||.+. ......+. .+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~-ll--~k~~iivlNK~DL~~~--~~~~~~~~----~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-VD-FS--RKETIILLNKVDIADE--KTTKKWVE----FFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-SC-CT--TSEEEEEEECGGGSCH--HHHHHHHH----HHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-HH-hc--CCCcEEEEECccCCCH--HHHHHHHH----HHHH
Confidence 38876433 34556789999999999999865543211 11 22 8999999999999642 21111111 0111
Q ss_pred cCCcceEEEEeeecCCCchhHHHHHHH
Q 005218 323 WGGKVQVVEVSAVKKTGLDDLEVALLL 349 (708)
Q Consensus 323 ~~~~~~vi~vSAktg~GI~~L~~~I~~ 349 (708)
. ..++ ++||++|.|+++|++.|..
T Consensus 74 ~--g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 Q--GKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp T--TCCE-EECCTTSCHHHHHHHHCCC
T ss_pred c--CCeE-EEECCCCcCHHHHHHHHHH
Confidence 1 2467 9999999999999887643
No 239
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.46 E-value=0.0002 Score=71.10 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=64.4
Q ss_pred cCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEccc--cceEEEEecccCCcccccCCCCcEEE--eccCCCC-
Q 005218 360 VDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGHE--WGRIRAIRDMVGKSTDKARPAMPVEI--EGLKGLP- 434 (708)
Q Consensus 360 ~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~~--~~kVr~i~~~~~~~v~~a~~g~~V~i--~gl~~~~- 434 (708)
.+.|++.+|.+++. +.|++++|++.+|++++||.|.+.+. ..+|++|+. +++.+++|.||+.|.+ .|++...
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~-~~~~~~~A~aGd~V~l~L~gi~~~di 79 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILS-DDVETDTVAPGENLKIRLKGIEEEEI 79 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECS-SSSCBSEECTTSEEEEEEEESSSSCC
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEE-CCEEeEEECCCCEEEEEEcCCCHHHC
Confidence 46789999999975 78999999999999999999999874 467999984 5678999999999988 6765321
Q ss_pred CCCCeEEEeC
Q 005218 435 MAGDDIIVVD 444 (708)
Q Consensus 435 ~~Gd~~~~v~ 444 (708)
..|+.+....
T Consensus 80 ~rG~vl~~~~ 89 (204)
T 3e1y_E 80 LPGFILCDPN 89 (204)
T ss_dssp CTTCEEBCSS
T ss_pred ccceEEECCC
Confidence 5788876543
No 240
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.42 E-value=0.0022 Score=70.87 Aligned_cols=179 Identities=14% Similarity=0.171 Sum_probs=121.5
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCC---------CCHhhHHhHHhcCC--EEEEeCCCCCch----------
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGS---------VTQSDVDLAQACGA--CIVGFNVKSPPT---------- 552 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~---------it~sDv~~A~~~~a--~Il~Fnv~~~~~---------- 552 (708)
.|+-|--+=+...+..+..-++-+=|+.+.-|. -|..-+.++...+. +|++.|= ++..
T Consensus 100 iDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK-~Dl~~~~~~~~~~~ 178 (439)
T 3j2k_7 100 LDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK-MDDPTVNWSNERYE 178 (439)
T ss_pred EECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeec-CCCcccchHHHHHH
Confidence 699998877888888888788888999998885 46666777777764 4666663 3420
Q ss_pred -h---HHHHHHHcC------CeEEE-----cchhhhhHH--------HHHHHHhhcCCCceeeeeeeceeEeeEEEeCCC
Q 005218 553 -S---VSQAATQAG------IKILM-----HSIIYHLLD--------DFGNLVVDKAPGTFETQVAGEAEVLNIFELKGR 609 (708)
Q Consensus 553 -~---~~~~a~~~~------V~i~~-----~~iIY~L~d--------~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~ 609 (708)
+ +..+++..| +.++. ..-|.+|.+ .+.+++....++.......=+.-|..+|+ +.
T Consensus 179 ~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~~--~~ 256 (439)
T 3j2k_7 179 ECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DM 256 (439)
T ss_pred HHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEEEEEEEEc--CC
Confidence 1 112222333 33432 334445444 24445555434332222222333444553 44
Q ss_pred CCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcccC--CCCCCCEEE
Q 005218 610 SKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWH--DFQVGDIIQ 685 (708)
Q Consensus 610 ~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~~--~~~~gD~ie 685 (708)
| +|+..+|.+|.+++|..+.++..+.. .+|.||+.++++|+++..|+.||+.+.+.+ |++-||++-
T Consensus 257 G-------~v~~G~v~~G~l~~Gd~v~~~p~~~~---~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~ 324 (439)
T 3j2k_7 257 G-------TVVLGKLESGSIFKGQQLVMMPNKHN---VEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILC 324 (439)
T ss_pred C-------eEEEEEEEeeEEecCCEEEEccCCce---EEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEec
Confidence 4 89999999999999999999998854 599999999999999999999999999654 788899884
No 241
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.40 E-value=0.00013 Score=80.71 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=53.8
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC---------------cccccccCceEEeeeEEEEEe--------c--CCeeEEEee
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT---------------SLVAKEAGGITQHMGAFVVGM--------S--TGASITFLD 243 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~---------------~~~~~~~~gtT~di~~~~v~~--------~--~g~~v~liD 243 (708)
-..|+|+|++++|||||+|+|++. ....-..+++|+......+.+ + ....+.|+|
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 356899999999999999999864 222222223333322222222 1 236799999
Q ss_pred CCCcchhhh-------hhhcccccccEEEEEEEccCCCChhHHHHHHHh
Q 005218 244 TPGHAAFSA-------MRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHA 285 (708)
Q Consensus 244 TpG~~~f~~-------~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l 285 (708)
|||..+... +....+--+++.| +.....+...+++.+...
T Consensus 147 TeG~~~~~~~~~~d~~ifal~~lLSs~~I--yN~~~~i~~~~l~~L~~~ 193 (447)
T 3q5d_A 147 TQGTFDSQSTLRDSATVFALSTMISSIQV--YNLSQNVQEDDLQHLQLF 193 (447)
T ss_dssp EECCCSSHHHHHHHHHHHHHHHHHCSEEE--EEESSSCCHHHHHHHHHH
T ss_pred CCcccccccchhhhHHHHHHHHHHhhHHH--HhhcccccHHHHHHHHHH
Confidence 999543221 1111122355544 444555667777666543
No 242
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.39 E-value=0.0032 Score=76.62 Aligned_cols=183 Identities=17% Similarity=0.247 Sum_probs=125.5
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCHh--hHHhHHhcCCE--EEEeCCCCCc----hh-------HHHHH
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQS--DVDLAQACGAC--IVGFNVKSPP----TS-------VSQAA 558 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~s--Dv~~A~~~~a~--Il~Fnv~~~~----~~-------~~~~a 558 (708)
.|+-|.-+=+...+..+..-++-+=|+.+.-|...++ -+.++...+-. |+..| |++. +. +.+++
T Consensus 364 IDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVIN-KiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 364 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLN-KCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp EECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEE-CCTTCCCHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEe-ecccccchhhHHHHHHHHHHHH
Confidence 4999988878888888888888888999887754332 23445555543 56666 2221 11 12234
Q ss_pred HHcC-----CeEEEcchhh---------hhHHHHHHHHhhcCCC-ceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEE
Q 005218 559 TQAG-----IKILMHSIIY---------HLLDDFGNLVVDKAPG-TFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCR 623 (708)
Q Consensus 559 ~~~~-----V~i~~~~iIY---------~L~d~~~~~~~~~~~~-~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~ 623 (708)
+..+ +.++.-+-.. +=++++-+.+...+++ .....-.-.+-|..+|.++++| +|+..+
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~G-------tVvtGr 515 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRG-------TVVTGR 515 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTE-------EEEEEE
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccccccceeeeccccccccCCc-------EEEEEE
Confidence 4444 5666544332 2244444455554542 2222222345677899998876 899999
Q ss_pred EEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEEE
Q 005218 624 VIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQ 685 (708)
Q Consensus 624 V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie 685 (708)
|.+|.|+.|+.+.+...+.. ...+|.||+.++++|+++..|+.||+.+.+. .+++.||+|-
T Consensus 516 V~sGtLkvGD~V~I~ps~~~-~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 516 VERGIIKVGEEVEIVGIKET-QKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLA 578 (1289)
T ss_dssp CCBSEEETTCEEEEESSSSC-EEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred EeccEEecCCEEEEecCCCc-eeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEe
Confidence 99999999999998886531 2359999999999999999999999999875 6999999984
No 243
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.34 E-value=0.0014 Score=73.12 Aligned_cols=179 Identities=16% Similarity=0.194 Sum_probs=110.4
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCC---------CCCHhhHHhHHhcCC--EEEEeCCCCCc-------h---
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVG---------SVTQSDVDLAQACGA--CIVGFNVKSPP-------T--- 552 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG---------~it~sDv~~A~~~~a--~Il~Fnv~~~~-------~--- 552 (708)
.|+-|.-+=....+..+..-++-+=|+.+.-| +-|..-+.++...+. +|+..| |++. +
T Consensus 126 iDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN-K~Dl~~~~~~~~~~~ 204 (467)
T 1r5b_A 126 LDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN-KMDEPSVQWSEERYK 204 (467)
T ss_dssp CCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE-CTTSTTCSSCHHHHH
T ss_pred EECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEE-CccCCCccccHHHHH
Confidence 46666655455566666667778888888877 356666777777764 466666 3332 1
Q ss_pred ----hHHHHHHHc-C------CeEEE-----cchhhhhHH----------HHHHHHhhcCCCceeeeeeeceeEeeEEEe
Q 005218 553 ----SVSQAATQA-G------IKILM-----HSIIYHLLD----------DFGNLVVDKAPGTFETQVAGEAEVLNIFEL 606 (708)
Q Consensus 553 ----~~~~~a~~~-~------V~i~~-----~~iIY~L~d----------~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~ 606 (708)
-+.++++.. | +.++. ..-|.++++ .+.+++....+|.....-.-++-|..+|+
T Consensus 205 ~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~~~~- 283 (467)
T 1r5b_A 205 ECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYK- 283 (467)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCEEEE-
T ss_pred HHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEEEEe-
Confidence 013344444 3 33443 122333332 13344444433332222122344556665
Q ss_pred CCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeecc-ccccceeccCCeEEEEEcc-cCCCCCCCEE
Q 005218 607 KGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKRE-KQDVDTVAKGNECGLVIRD-WHDFQVGDII 684 (708)
Q Consensus 607 ~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~-k~~V~ev~kG~ecgi~~~~-~~~~~~gD~i 684 (708)
+.| +|+..+|.+|.+++|..+.++..+.. ++|.||..+ +++++++..|+-||+.+.+ -.+++.||+|
T Consensus 284 -~~G-------~v~~G~v~~G~l~~gd~v~~~p~~~~---~~V~~i~~~~~~~~~~a~aG~~v~i~l~g~~~~i~rG~vl 352 (467)
T 1r5b_A 284 -DLG-------TILEGKIEAGSIKKNSNVLVMPINQT---LEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQTGYVL 352 (467)
T ss_dssp -SSS-------EEEEEECCBSEEETTEEEEEETTTEE---EEEEEEECTTCCEESEEETTCEEEEEEESCCTTCCTTCEE
T ss_pred -CCC-------eEEEEEEeeeEEeeCCEEEEccCCee---EEEEEEeccCCcEeeEEcCCCEEEEEEeccHhhCCceEEE
Confidence 334 78888999999999999999888754 699999998 9999999999999999996 6799999998
Q ss_pred E
Q 005218 685 Q 685 (708)
Q Consensus 685 e 685 (708)
-
T Consensus 353 ~ 353 (467)
T 1r5b_A 353 T 353 (467)
T ss_dssp E
T ss_pred e
Confidence 4
No 244
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.32 E-value=0.0017 Score=71.65 Aligned_cols=182 Identities=18% Similarity=0.283 Sum_probs=120.1
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCC-------CC--CHhhHHhHHhcC--CEEEEeCC-CCCc----------
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVG-------SV--TQSDVDLAQACG--ACIVGFNV-KSPP---------- 551 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG-------~i--t~sDv~~A~~~~--a~Il~Fnv-~~~~---------- 551 (708)
.|+-|..+=....+..+..-++-+=|+++.-| .. +..-..++...+ .+|+..|= ....
T Consensus 89 iDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 168 (435)
T 1jny_A 89 IDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKE 168 (435)
T ss_dssp CCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHH
T ss_pred EECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHH
Confidence 58888877777788888777888888888766 22 222333444445 24566652 1111
Q ss_pred --hhHHHHHHHcC-----CeEEEcc-----hhhhhHH--------HHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCC
Q 005218 552 --TSVSQAATQAG-----IKILMHS-----IIYHLLD--------DFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSK 611 (708)
Q Consensus 552 --~~~~~~a~~~~-----V~i~~~~-----iIY~L~d--------~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~ 611 (708)
+.+.++++..+ +.++.-+ -|-++++ .+.+.+....+|.....-.-+.-|..+|++++.|
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v~~~~~~G- 247 (435)
T 1jny_A 169 IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVG- 247 (435)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEEEEETTTE-
T ss_pred HHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhccCCCCCCCCCCeEEEEEEEEEeCCCc-
Confidence 01133344444 4555422 2222211 2223344444443222222245577899998766
Q ss_pred CCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcc--cCCCCCCCEEE
Q 005218 612 AKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRD--WHDFQVGDIIQ 685 (708)
Q Consensus 612 ~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~--~~~~~~gD~ie 685 (708)
+++..+|.+|.++.|+.+.+...+.. .+|.||+.++++|+++..|+-||+.+.+ ..+++.||+|-
T Consensus 248 ------~v~~g~v~~G~l~~gd~v~~~p~~~~---~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~ 314 (435)
T 1jny_A 248 ------TVPVGRVESGVLKVGDKIVFMPAGKV---GEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVG 314 (435)
T ss_dssp ------EEEEEECCBSCEETTCEEEEETTTEE---EEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEE
T ss_pred ------EEEEEEEecCeEEcCCEEEECCceeE---EEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEec
Confidence 78899999999999999999888754 5999999999999999999999999986 46899999985
No 245
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.29 E-value=0.00025 Score=78.41 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=64.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhh-------cCcccc--cc--cCce-----------EEeeeEE------------EE-E
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALR-------QTSLVA--KE--AGGI-----------TQHMGAF------------VV-G 232 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~-------~~~~~~--~~--~~gt-----------T~di~~~------------~v-~ 232 (708)
++..|+++|++|+||||++..|. +.++.. .+ .++. ..++... .+ .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999999985 333221 00 0000 0010000 00 0
Q ss_pred ec-CCeeEEEeeCCCcchhhhhhh------cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCC
Q 005218 233 MS-TGASITFLDTPGHAAFSAMRK------RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKP 302 (708)
Q Consensus 233 ~~-~g~~v~liDTpG~~~f~~~~~------~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~ 302 (708)
.. .++.+.|+||||.-.+..... ..+..+|.+++|+|+..+. .....+.... ...+ .-+|+||+|..
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~-~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFN-EALPLTGVVLTKVDGD 253 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHH-HHSCCCCEEEECTTSS
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHh-ccCCCeEEEEecCCCC
Confidence 01 578899999999644321111 1244788999999998762 2233333332 2345 34799999973
No 246
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.18 E-value=0.00061 Score=76.07 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=75.7
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC------ccccc--ccCce-----------EEeeeEEEEE--------------
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT------SLVAK--EAGGI-----------TQHMGAFVVG-------------- 232 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~------~~~~~--~~~gt-----------T~di~~~~v~-------------- 232 (708)
..++-.++|+|+.|+|||||++.|.+. .+... +.-.. .+.+......
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 456778999999999999999998542 11110 00000 0001111000
Q ss_pred --ecCCeeEEEeeCCCcchhhh--hh-----hccc-----ccccEEEEEEEccCCCChhHHHHHHHhhh-cCCCEEEEEe
Q 005218 233 --MSTGASITFLDTPGHAAFSA--MR-----KRGA-----AVTDIVVLVVAADDGVMPQTLEAIAHANA-ANVPIVVAIN 297 (708)
Q Consensus 233 --~~~g~~v~liDTpG~~~f~~--~~-----~~~~-----~~aDivllVvDa~~g~~~q~~~~l~~l~~-~~~piIvViN 297 (708)
...++.+.|+||+|...... +. .+.+ ...+-++||+|++.| ......++.+.. .++ ..+++|
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~i-tgvIlT 446 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGL-TGITLT 446 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCC-SEEEEE
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCC-CEEEEE
Confidence 01457799999999532211 10 0111 235678999999875 233344443332 333 457899
Q ss_pred CCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 298 KCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 298 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|+|-.. ....+...+... ..|+.++. +|+++++|
T Consensus 447 KLD~ta-kgG~~lsi~~~~---------~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 447 KLDGTA-KGGVIFSVADQF---------GIPIRYIG--VGERIEDL 480 (503)
T ss_dssp CGGGCS-CCTHHHHHHHHH---------CCCEEEEE--CSSSGGGE
T ss_pred cCCCcc-cccHHHHHHHHH---------CCCEEEEe--cCCChhhc
Confidence 999632 212222222111 24666654 78888776
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.07 E-value=0.00017 Score=76.00 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=55.9
Q ss_pred cccccccEEEEEEEccCCCChhH-H-HHHHHhhhcCCCEEEEEeCCCCCCCCcc-hhhhhhhhcccchhccCCcceEEEE
Q 005218 256 RGAAVTDIVVLVVAADDGVMPQT-L-EAIAHANAANVPIVVAINKCDKPAADPE-RVKNQLGAEGLELEDWGGKVQVVEV 332 (708)
Q Consensus 256 ~~~~~aDivllVvDa~~g~~~q~-~-~~l~~l~~~~~piIvViNK~Dl~~~~~~-~~~~~l~~~~~~~~~~~~~~~vi~v 332 (708)
..+.++|.+++|+|+.++..... + ..+..+...++|.++|+||+||.+.... ...+.+... +... ..+++.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~---y~~~--g~~v~~~ 156 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAED---YRNI--GYDVYLT 156 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHH---HHHH--TCCEEEC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHH---HHhC--CCeEEEE
Confidence 45789999999999987654433 1 2222334578999999999999753210 011111111 1111 2478999
Q ss_pred eeecCCCchhHHHHH
Q 005218 333 SAVKKTGLDDLEVAL 347 (708)
Q Consensus 333 SAktg~GI~~L~~~I 347 (708)
||++|.|+++|++.+
T Consensus 157 sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 157 SSKDQDSLADIIPHF 171 (307)
T ss_dssp CHHHHTTCTTTGGGG
T ss_pred ecCCCCCHHHHHhhc
Confidence 999999999887643
No 248
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.05 E-value=0.0026 Score=70.14 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=114.3
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCCCCH--hhHHhHHhcCC--EEEEeCCCCCch---------h---HHHH
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGSVTQ--SDVDLAQACGA--CIVGFNVKSPPT---------S---VSQA 557 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~it~--sDv~~A~~~~a--~Il~Fnv~~~~~---------~---~~~~ 557 (708)
.|+-|.-+=....+..+..-++-+=|+.+.-|...+ .-+.++...+. +|+..|= .+.. + +.++
T Consensus 109 iDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK-~Dl~~~~~~~~~~i~~~~~~~ 187 (434)
T 1zun_B 109 ADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINK-MDLNGFDERVFESIKADYLKF 187 (434)
T ss_dssp EECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEEC-TTTTTSCHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEc-CcCCcccHHHHHHHHHHHHHH
Confidence 477776554555666667777888888888775322 23455555553 5666663 3321 0 1122
Q ss_pred HHHcC-----CeEEEcc-----hhhhhHHH--------HHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceE
Q 005218 558 ATQAG-----IKILMHS-----IIYHLLDD--------FGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKI 619 (708)
Q Consensus 558 a~~~~-----V~i~~~~-----iIY~L~d~--------~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~i 619 (708)
++..+ +.++.-+ -|-++++. +.++++...++.....-.-++-|..+|+....+ ..
T Consensus 188 ~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~-------~g 260 (434)
T 1zun_B 188 AEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNF-------RG 260 (434)
T ss_dssp HHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSSSC-------CE
T ss_pred HHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCCCc-------eE
Confidence 34455 5555433 23332111 223444433332221112233444566544333 45
Q ss_pred EEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEcccCCCCCCCEEEE
Q 005218 620 AGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQC 686 (708)
Q Consensus 620 aGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie~ 686 (708)
++.+|.+|.+++|..+.++..|.. ++|.||+.++.+|+++..|+-+++.+.+-.+++.||+|-.
T Consensus 261 ~~G~v~~G~l~~gd~v~~~p~~~~---~~V~~i~~~~~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~ 324 (434)
T 1zun_B 261 FAGTLASGIVHKGDEIVVLPSGKS---SRVKSIVTFEGELEQAGPGQAVTLTMEDEIDISRGDLLVH 324 (434)
T ss_dssp EEEECCBSCEETTCEEEETTTCCE---EEEEEEEETTEEESEECTTCEEEEEESSCCCCCTTCEEEE
T ss_pred EEEEEecceEeCCCEEEEecCCeE---EEEEEEEEcCcceeEecCCCEEEEEeCCccccCCccEEEC
Confidence 667899999999999999887754 6999999999999999999999999998778999999854
No 249
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.00 E-value=0.0014 Score=69.04 Aligned_cols=141 Identities=22% Similarity=0.231 Sum_probs=74.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC------ccccc--cc--Cc-e--------EEeeeEEEEE----------------
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT------SLVAK--EA--GG-I--------TQHMGAFVVG---------------- 232 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~------~~~~~--~~--~g-t--------T~di~~~~v~---------------- 232 (708)
++-.++|+|+.|+|||||++.|.+. .+... +. .+ . ...+......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998532 11100 00 00 0 0011110000
Q ss_pred ecCCeeEEEeeCCCcchhhh--------hhh---c-ccccccEEEEEEEccCCCChhHHHHHHHhhh-cCCCEEEEEeCC
Q 005218 233 MSTGASITFLDTPGHAAFSA--------MRK---R-GAAVTDIVVLVVAADDGVMPQTLEAIAHANA-ANVPIVVAINKC 299 (708)
Q Consensus 233 ~~~g~~v~liDTpG~~~f~~--------~~~---~-~~~~aDivllVvDa~~g~~~q~~~~l~~l~~-~~~piIvViNK~ 299 (708)
...+..+.++||+|...... .+. + .....+.+++++|+..+. +..+.+..+.. .+. .++++||.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~~-t~iivTh~ 257 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVGL-TGVIVTKL 257 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHCC-SEEEEECT
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcCC-cEEEEECC
Confidence 00245678999999532211 110 1 124578889999987653 33444444332 243 57789999
Q ss_pred CCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 300 DKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 300 Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|... ....+....... ..|+.+++ +|+++++|
T Consensus 258 d~~a-~gg~~l~i~~~~---------~~pi~~ig--~Ge~~~dl 289 (304)
T 1rj9_A 258 DGTA-KGGVLIPIVRTL---------KVPIKFVG--VGEGPDDL 289 (304)
T ss_dssp TSSC-CCTTHHHHHHHH---------CCCEEEEE--CSSSTTCE
T ss_pred cccc-cccHHHHHHHHH---------CCCeEEEe--CCCChhhc
Confidence 8642 212222111111 24677776 78888765
No 250
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=96.99 E-value=0.0023 Score=63.38 Aligned_cols=75 Identities=11% Similarity=0.259 Sum_probs=64.6
Q ss_pred eEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--C
Q 005218 599 EVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--H 676 (708)
Q Consensus 599 ~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~ 676 (708)
-|..+|+ +.| +|+.-+|..|.++.|..+.++..+.. .+|.||+.++++++++..|+.+|+.+.+. .
T Consensus 10 ~v~~v~~--g~G-------~v~~G~v~~G~i~~Gd~v~i~P~~~~---~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~ 77 (204)
T 3e1y_E 10 PIVDKYK--DMG-------TVVLGKLESGSICKGQQLVMMPNKHN---VEVLGILSDDVETDTVAPGENLKIRLKGIEEE 77 (204)
T ss_dssp EEEEEEE--SSS-------EEEEEECCBSCEESSCCEEETTTTEE---EEEEEECSSSSCBSEECTTSEEEEEEEESSSS
T ss_pred EEEEEEc--CCC-------EEEEEEEecCEEECCCEEEECCCCCE---EEEEEEEECCEEeEEECCCCEEEEEEcCCCHH
Confidence 4556776 444 88899999999999999999988744 69999999999999999999999999965 5
Q ss_pred CCCCCCEEE
Q 005218 677 DFQVGDIIQ 685 (708)
Q Consensus 677 ~~~~gD~ie 685 (708)
|+..||++-
T Consensus 78 di~rG~vl~ 86 (204)
T 3e1y_E 78 EILPGFILC 86 (204)
T ss_dssp CCCTTCEEB
T ss_pred HCccceEEE
Confidence 899999884
No 251
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.99 E-value=0.00047 Score=72.66 Aligned_cols=141 Identities=21% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC------cccc-c-cc---------------CceEEeeeEE-----------EEE
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT------SLVA-K-EA---------------GGITQHMGAF-----------VVG 232 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~------~~~~-~-~~---------------~gtT~di~~~-----------~v~ 232 (708)
.++..|+++|++|+||||++..|... ++.. . +. .+... +... .+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~-~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV-ISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE-ECCSTTCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE-EecCCccCHHHHHHHHHH
Confidence 34567899999999999999988532 1110 0 00 01100 0000 000
Q ss_pred --ecCCeeEEEeeCCCcchhhhhh-------hcc-----cccccEEEEEEEccCCCChhHHHHHHHhhh-cCCCEEEEEe
Q 005218 233 --MSTGASITFLDTPGHAAFSAMR-------KRG-----AAVTDIVVLVVAADDGVMPQTLEAIAHANA-ANVPIVVAIN 297 (708)
Q Consensus 233 --~~~g~~v~liDTpG~~~f~~~~-------~~~-----~~~aDivllVvDa~~g~~~q~~~~l~~l~~-~~~piIvViN 297 (708)
...++.+.++||||........ .+. ....|.+++|+|+..+ .........+.. .++ .-+++|
T Consensus 181 ~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i-~gvVlT 257 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNV-TGIILT 257 (306)
T ss_dssp HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCC-CEEEEE
T ss_pred HHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCC-CEEEEe
Confidence 0145779999999953221110 011 1347889999999743 223333333322 222 456789
Q ss_pred CCCCCCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 298 KCDKPAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 298 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
|.|-.. ............ ..|+.+++ +|+++++|
T Consensus 258 k~D~~~-~gG~~l~~~~~~---------~~Pi~~i~--~Ge~~~dl 291 (306)
T 1vma_A 258 KLDGTA-KGGITLAIAREL---------GIPIKFIG--VGEKAEDL 291 (306)
T ss_dssp CGGGCS-CTTHHHHHHHHH---------CCCEEEEE--CSSSGGGE
T ss_pred CCCCcc-chHHHHHHHHHH---------CCCEEEEe--CCCChhhc
Confidence 999642 222222222211 24777775 57777765
No 252
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.99 E-value=0.0024 Score=73.28 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=76.9
Q ss_pred hhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeee
Q 005218 573 HLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISL 652 (708)
Q Consensus 573 ~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~sl 652 (708)
.|++.+ ...++|.......=+.-|..+|+. +.| +++..+|.+|.|+.|..+.++..|.. .+|.||
T Consensus 386 ~Lle~l----~~~~pp~~~~~~p~r~~v~~v~~~-~~g-------~v~~G~v~~G~l~~Gd~v~i~p~~~~---~~V~~i 450 (592)
T 3mca_A 386 TLLSAL----DQLVPPEKPYRKPLRLSIDDVYRS-PRS-------VTVTGRVEAGNVQVNQVLYDVSSQED---AYVKNV 450 (592)
T ss_dssp CHHHHH----HTSCCCSCTTTSCCEEEEEEEEEE-TTE-------EEEEEEEEESEEETTCEEEETTTTEE---EEEEEE
T ss_pred HHHHHH----HhhccccccccccchheeeEEEec-CCe-------EEEEEEEeeeeEccCCEEEEccCCce---EEEEEE
Confidence 555544 334444332222234567789998 665 88899999999999999999988864 699999
Q ss_pred eccccccc-eeccCCeEEEEEccc--CCCCCCCEEE
Q 005218 653 KREKQDVD-TVAKGNECGLVIRDW--HDFQVGDIIQ 685 (708)
Q Consensus 653 k~~k~~V~-ev~kG~ecgi~~~~~--~~~~~gD~ie 685 (708)
..++++|. ++..|+-||+.+.+. .+++.||+|-
T Consensus 451 ~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~ 486 (592)
T 3mca_A 451 IRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILS 486 (592)
T ss_dssp ECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEE
T ss_pred EEcCccCcceecCCCEEEEEEccccccccceEEEec
Confidence 99999999 999999999999985 4899999985
No 253
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.92 E-value=0.0021 Score=71.53 Aligned_cols=101 Identities=12% Similarity=0.234 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEee
Q 005218 572 YHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCIS 651 (708)
Q Consensus 572 Y~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~s 651 (708)
..|++.+. ...+|.......-+.-|..+|++++.| +|+..+|.+|.++.|..+.++..+.. .+|.|
T Consensus 224 ~~Ll~~l~----~~~~p~~~~~~p~r~~i~~v~~~~g~G-------~v~~G~v~~G~l~~gd~v~~~p~~~~---~~V~~ 289 (458)
T 1f60_A 224 KTLLEAID----AIEQPSRPTDKPLRLPLQDVYKIGGIG-------TVPVGRVETGVIKPGMVVTFAPAGVT---TEVKS 289 (458)
T ss_dssp SSHHHHHH----TSCCCCCCTTSCCEEEEEEEEEETTTE-------EEEEEECCBSCBCTTCEEEEETTTEE---EEEEE
T ss_pred HHHHHHhh----ccCCCcccCCCCcEEEEEEEEEeCCCc-------EEEEEEEeCCeEcCCCEEEECCCCce---EEEeE
Confidence 35666543 344444333333456778899998876 78888999999999999999988754 59999
Q ss_pred eeccccccceeccCCeEEEEEccc--CCCCCCCEEEE
Q 005218 652 LKREKQDVDTVAKGNECGLVIRDW--HDFQVGDIIQC 686 (708)
Q Consensus 652 lk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~ie~ 686 (708)
|+.+++++.++..|+.|||.+.+. .+++.||+|-.
T Consensus 290 i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~ 326 (458)
T 1f60_A 290 VEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGD 326 (458)
T ss_dssp EEETTEECSCBCTTCEEEEEESSCCTTTSCTTCEEEE
T ss_pred EEECCeEEEEEcCCCEEEEEEcCCcccccCceeEEec
Confidence 999999999999999999999875 68999999854
No 254
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.79 E-value=0.0017 Score=68.81 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=52.7
Q ss_pred CCeeEEEeeCCCcchhhh--hhh-----c-----ccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCC
Q 005218 235 TGASITFLDTPGHAAFSA--MRK-----R-----GAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDK 301 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~--~~~-----~-----~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl 301 (708)
.++.+.|+||||.-.... +.. . .-..+|.+++|+|+..+ ......+..... ..+ .=+|+||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCcEEEEeCCCC
Confidence 568899999999544321 100 0 11347899999999854 334444433322 233 3478999996
Q ss_pred CCCCcchhhhhhhhcccchhccCCcceEEEEeeecCCCchhHH
Q 005218 302 PAADPERVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDLE 344 (708)
Q Consensus 302 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L~ 344 (708)
... ........... ..|+.+++ +|+++++|.
T Consensus 267 ~~~-~g~~~~~~~~~---------~~Pi~~i~--~Ge~~~dl~ 297 (320)
T 1zu4_A 267 TSK-GGIGLAIKELL---------NIPIKMIG--VGEKVDDLL 297 (320)
T ss_dssp CSC-TTHHHHHHHHH---------CCCEEEEE--CSSSTTCEE
T ss_pred CCc-hhHHHHHHHHH---------CcCEEEEe--CCCCccccc
Confidence 422 12222222211 24666654 688887663
No 255
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.71 E-value=0.0045 Score=69.24 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=66.4
Q ss_pred ceeEeeEEEeCC---CCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeeccc--------cccceeccC
Q 005218 597 EAEVLNIFELKG---RSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREK--------QDVDTVAKG 665 (708)
Q Consensus 597 ~a~v~~vf~~~~---~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k--------~~V~ev~kG 665 (708)
+.-|..+|++++ .| +|+..+|..|.++.|..+.++..|.. .+|.||+.+. ++|+++..|
T Consensus 268 r~~v~~v~~~~~~~g~g-------~v~~G~v~~G~l~~gd~v~~~p~~~~---~~V~~i~~~~~~~~~~~~~~~~~a~aG 337 (483)
T 3p26_A 268 LFSVLEIIPSKKTSNDL-------ALVSGKLESGSIQPGESLTIYPSEQS---CIVDKIQVGSQQGQSTNHEETDVAIKG 337 (483)
T ss_dssp EEEEEEEEC---CCSCC-------EEEEEEEEESEECTTCEEEEETTTEE---EEEEEEEETTTC-----CCEESCEETT
T ss_pred EEEEEEEEccCCcCCCc-------eEEEEEEecceEccCCEEEEeCCCCe---EEEEEEEEcCccccccccccccEECCC
Confidence 455667888663 33 89999999999999999999998875 5999999984 999999999
Q ss_pred CeEEEEEccc--CCCCCCCEEE
Q 005218 666 NECGLVIRDW--HDFQVGDIIQ 685 (708)
Q Consensus 666 ~ecgi~~~~~--~~~~~gD~ie 685 (708)
+.|||.+.+. .|++.||+|-
T Consensus 338 ~~v~~~l~~~~~~di~rG~vl~ 359 (483)
T 3p26_A 338 DFVTLKLRKAYPEDIQNGDLAA 359 (483)
T ss_dssp CEEEEEEESCCGGGCCTTCEEE
T ss_pred CEEEEEEEecccccCCceEEEE
Confidence 9999999885 6999999985
No 256
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.66 E-value=0.0092 Score=65.16 Aligned_cols=90 Identities=14% Similarity=0.234 Sum_probs=66.7
Q ss_pred eceeEeeEEEeCCCCC-CCCCCceEEEEEEEecEEeeCCeEEEeeC------CeEEE---EEEEeeeeccccccceeccC
Q 005218 596 GEAEVLNIFELKGRSK-AKGDDVKIAGCRVIDGCFTRSSTMRLLRS------GEVVF---EGSCISLKREKQDVDTVAKG 665 (708)
Q Consensus 596 g~a~v~~vf~~~~~~~-~~~~~~~iaGc~V~~G~i~~~~~~rv~R~------~~~i~---~g~i~slk~~k~~V~ev~kG 665 (708)
-++.|..+|.+++.+. .......|+..+|.+|.++.|+.+.++.. |...| .++|.||+.++++|+++..|
T Consensus 209 ~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG 288 (410)
T 1kk1_A 209 PKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPG 288 (410)
T ss_dssp CEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSS
T ss_pred cEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCC
Confidence 3466777888765331 00001368888999999999999988753 33333 57999999999999999999
Q ss_pred CeEEEEEcc---c--CCCCCCCEEE
Q 005218 666 NECGLVIRD---W--HDFQVGDIIQ 685 (708)
Q Consensus 666 ~ecgi~~~~---~--~~~~~gD~ie 685 (708)
+.||+.++. . .|+..||++-
T Consensus 289 ~~v~~~~~~~~~~~~~d~~~G~vl~ 313 (410)
T 1kk1_A 289 GLVGVGTKLDPYLTKGDLMAGNVVG 313 (410)
T ss_dssp SCEEEEESSCGGGTGGGTTTTCEEE
T ss_pred CEEEEEEecCcccchhhccceeEEe
Confidence 999999852 2 5788898874
No 257
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.62 E-value=0.0069 Score=66.07 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=75.8
Q ss_pred hhhhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCC-CCCCCceEEEEEEEecEEeeCCeEEEeeCCeE------
Q 005218 571 IYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSK-AKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEV------ 643 (708)
Q Consensus 571 IY~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~-~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~------ 643 (708)
|-+|++.+.+++. ++.......-.+-|..+|.+++.+. .......|+..+|.+|.++.|..+.+...+.+
T Consensus 179 i~~L~~~l~~~l~---~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~ 255 (403)
T 3sjy_A 179 IDSLIEGIEEYIK---TPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKV 255 (403)
T ss_dssp HHHHHHHHHHHSC---CCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEE
T ss_pred hHHHHHHHHHhCC---CCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCccccccccc
Confidence 3456665554332 2222112223456667888776221 00011378999999999999999988775532
Q ss_pred EE---EEEEeeeeccccccceeccCCeEEEEEc---c--cCCCCCCCEEE
Q 005218 644 VF---EGSCISLKREKQDVDTVAKGNECGLVIR---D--WHDFQVGDIIQ 685 (708)
Q Consensus 644 i~---~g~i~slk~~k~~V~ev~kG~ecgi~~~---~--~~~~~~gD~ie 685 (708)
.| ..+|.||+.++++|+++..|+-||+.+. + -.|+..||++-
T Consensus 256 ~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~ 305 (403)
T 3sjy_A 256 SYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIIT 305 (403)
T ss_dssp EEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEE
T ss_pred ccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccEEe
Confidence 22 4699999999999999999999999885 2 25888998874
No 258
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.59 E-value=0.0052 Score=67.16 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=67.0
Q ss_pred eceeEeeEEEeCCCCC-CCCCCceEEEEEEEecEEeeCCeEEEeeCC------eEEE---EEEEeeeeccccccceeccC
Q 005218 596 GEAEVLNIFELKGRSK-AKGDDVKIAGCRVIDGCFTRSSTMRLLRSG------EVVF---EGSCISLKREKQDVDTVAKG 665 (708)
Q Consensus 596 g~a~v~~vf~~~~~~~-~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~------~~i~---~g~i~slk~~k~~V~ev~kG 665 (708)
-++-|..+|.+++.+. ..+....|+..+|.+|.++.|+.+.++..+ ...| ..+|.||+.++++|+++..|
T Consensus 207 ~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G 286 (408)
T 1s0u_A 207 PRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPG 286 (408)
T ss_dssp CEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSS
T ss_pred eEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCC
Confidence 3556778898775331 000013688889999999999999887633 2222 57999999999999999999
Q ss_pred CeEEEEEc---cc--CCCCCCCEEE
Q 005218 666 NECGLVIR---DW--HDFQVGDIIQ 685 (708)
Q Consensus 666 ~ecgi~~~---~~--~~~~~gD~ie 685 (708)
+.||+.+. +. .|+..||++-
T Consensus 287 ~~v~~~~~~~~~~~~~~~~~G~vl~ 311 (408)
T 1s0u_A 287 GLIGVGTTLDPYLTKSDALTGSVVG 311 (408)
T ss_dssp SCEEEECSSCGGGTGGGTTTTCEEE
T ss_pred CeEEEEeccCcccchhhccceeEEE
Confidence 99999885 22 4788898874
No 259
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.014 Score=67.23 Aligned_cols=182 Identities=17% Similarity=0.186 Sum_probs=121.2
Q ss_pred EecccccHHHHHHHHHhCCCCceEEEEEEecCC---------CCCHhhHHhHHhcCC--EEEEeCCCCCch---------
Q 005218 493 KADVQGTVQAVTDALKTLNSPQLFVNVVHVGVG---------SVTQSDVDLAQACGA--CIVGFNVKSPPT--------- 552 (708)
Q Consensus 493 Kad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG---------~it~sDv~~A~~~~a--~Il~Fnv~~~~~--------- 552 (708)
=.|+-|.-.-+...+..+..-.+-+=|+.++-| +-|...+.++...+. +|++.|= ++..
T Consensus 249 iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNK-iDl~~~~~~~~~e 327 (611)
T 3izq_1 249 IVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK-MDNVDWSQQRFEE 327 (611)
T ss_dssp EEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEEC-TTTTTTCHHHHHH
T ss_pred EEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEec-ccccchhHHHHHH
Confidence 369999877777778778888888889988765 445555666666662 5667763 3311
Q ss_pred hHH---HHHHHc-----CCeEEEcc-----hhhhhHH-----------HHHHHHhhcCC------CceeeeeeeceeEee
Q 005218 553 SVS---QAATQA-----GIKILMHS-----IIYHLLD-----------DFGNLVVDKAP------GTFETQVAGEAEVLN 602 (708)
Q Consensus 553 ~~~---~~a~~~-----~V~i~~~~-----iIY~L~d-----------~~~~~~~~~~~------~~~~~~~~g~a~v~~ 602 (708)
+.. ...+.. ++.++.-+ -|-+|.+ .+.++|....+ |.......-+.-|..
T Consensus 328 i~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V~~ 407 (611)
T 3izq_1 328 IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLE 407 (611)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEECCE
T ss_pred HHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhheee
Confidence 011 112222 34555432 2333321 24444554422 111122223455667
Q ss_pred EEEeCC---CCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeecc--------ccccceeccCCeEEEE
Q 005218 603 IFELKG---RSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKRE--------KQDVDTVAKGNECGLV 671 (708)
Q Consensus 603 vf~~~~---~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~--------k~~V~ev~kG~ecgi~ 671 (708)
+|++++ .| +|+..+|..|.+++|..+.++..|.. .+|.||+.+ +.+|.++..|+.|||.
T Consensus 408 v~~~~~~~g~g-------~v~~G~V~~G~lk~Gd~v~~~p~~~~---~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~ 477 (611)
T 3izq_1 408 IIPSKKTSNDL-------ALVSGKLESGSIQPGESLTIYPSEQS---CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLK 477 (611)
T ss_dssp EECCSSSCSSS-------SEEEEEEEESEECTTCEEEETTTTEE---EEEEEEECSSCCSCSSSCCCCCCEETTCEEEEE
T ss_pred eeccCccCCCe-------eEEEEEEEeceeccCCEEEEecCCce---EEEEEEEEcccccccccccccceecCCCcceEE
Confidence 888763 33 78889999999999999999998875 599999998 4899999999999999
Q ss_pred Eccc--CCCCCCCEEE
Q 005218 672 IRDW--HDFQVGDIIQ 685 (708)
Q Consensus 672 ~~~~--~~~~~gD~ie 685 (708)
+.+. .++..||+|-
T Consensus 478 l~~~~~~di~rGdvl~ 493 (611)
T 3izq_1 478 LRKAYPEDIQNGDLAA 493 (611)
T ss_dssp ESSCCTTSCCTTCEEB
T ss_pred eeeccHhhCcceEEcc
Confidence 9886 6999999984
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.47 E-value=0.0018 Score=67.90 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=60.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC-------cccc--ccc--C-------------ceEEeeeE-------EEEEecC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT-------SLVA--KEA--G-------------GITQHMGA-------FVVGMST 235 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~-------~~~~--~~~--~-------------gtT~di~~-------~~v~~~~ 235 (708)
.++..++++|++|+||||++..|... ++.. .+. + +....... ..... .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~ 181 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S 181 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence 45779999999999999999998531 1110 000 0 00000000 00011 4
Q ss_pred CeeEEEeeCCCcchhhhh--h--hccc--ccccEEEEEEEccCCCChhHHHH-HHHhhhcCCCEEEEEeCCCCC
Q 005218 236 GASITFLDTPGHAAFSAM--R--KRGA--AVTDIVVLVVAADDGVMPQTLEA-IAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 236 g~~v~liDTpG~~~f~~~--~--~~~~--~~aDivllVvDa~~g~~~q~~~~-l~~l~~~~~piIvViNK~Dl~ 302 (708)
++.+.|+||||....... . ...+ ...|.+++|+|++.+. +.... ...+...+. .-+++||+|..
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~~~~~~~~~~~~l~~-~giVltk~D~~ 252 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--EDMKHIVKRFSSVPV-NQYIFTKIDET 252 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--HHHHHHTTTTSSSCC-CEEEEECTTTC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--HHHHHHHHHHhcCCC-CEEEEeCCCcc
Confidence 678999999996543221 1 1112 2367889999987642 22222 222222222 34567999975
No 261
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.44 E-value=0.00087 Score=70.60 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=35.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccc-ccc-------CceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEA-------GGITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~-------~gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
.++..++|+|++|+|||||+|.|.+..... ... .++|++.. .+.. . .-.++||||...+
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEE-T--TEEEESSCSCSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--Hhhc-C--CEEEecCCCcccc
Confidence 367899999999999999999998754321 211 13444322 1222 2 2478999997654
No 262
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=96.31 E-value=0.023 Score=50.58 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=57.5
Q ss_pred CCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcc-ccceEEEEecccCCcccccCCCCcEEEe--ccC-CCCCCC
Q 005218 362 GPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH-EWGRIRAIRDMVGKSTDKARPAMPVEIE--GLK-GLPMAG 437 (708)
Q Consensus 362 ~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~-~~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~-~~~~~G 437 (708)
.|....++....--. |+++.|+|.+|+|++|+.| -+. ..+.|++|+ .+++.+++|.||+.|.+. |.. ++ ..|
T Consensus 33 ~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V-Pg~~~vg~VkSIE-~~~e~v~eA~~GdnVai~Ikg~~~~I-~~G 108 (116)
T 1xe1_A 33 PAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV-KGPSGIGGIVRIE-RNREKVEFAIAGDRIGISIEGKIGKV-KKG 108 (116)
T ss_dssp CSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE-ECSSCEEEEEEEE-ETTEEESEEETTCEEEEEEESCCCCC-CTT
T ss_pred CcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc-CCCceEEEEEEEE-ECCcCcCCcCCCCEEEEEEECCcccc-CCC
Confidence 355555555322233 8888999999999999999 444 468999999 478899999999998865 433 33 578
Q ss_pred CeEEEe
Q 005218 438 DDIIVV 443 (708)
Q Consensus 438 d~~~~v 443 (708)
|.+.+-
T Consensus 109 dVLyv~ 114 (116)
T 1xe1_A 109 DVLEIY 114 (116)
T ss_dssp CEEEEE
T ss_pred cEEEEe
Confidence 877653
No 263
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.29 E-value=0.0014 Score=63.64 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=47.4
Q ss_pred CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhc-----CCCEEEEEeCCCCC
Q 005218 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAA-----NVPIVVAINKCDKP 302 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~-----~~piIvViNK~Dl~ 302 (708)
..+.+.++|||+.. .......+..+|.+++++..+... ......+..+... +.++.+|+|++|..
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 45889999999864 333344567899999999887755 5566666666533 45789999999963
No 264
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.28 E-value=0.0046 Score=69.19 Aligned_cols=178 Identities=16% Similarity=0.169 Sum_probs=120.7
Q ss_pred ecccccHHHHHHHHHhCCCCceEEEEEEecCCC--CCHhhHHhHHhcC-CEEEEeCCCCCc--h-h-------HHHHHHH
Q 005218 494 ADVQGTVQAVTDALKTLNSPQLFVNVVHVGVGS--VTQSDVDLAQACG-ACIVGFNVKSPP--T-S-------VSQAATQ 560 (708)
Q Consensus 494 ad~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~--it~sDv~~A~~~~-a~Il~Fnv~~~~--~-~-------~~~~a~~ 560 (708)
.|+-|.-+=+...+..+..-++-+=|+++.-|. -|..-+.++...+ ..|+..| |.+. . . +.+.++.
T Consensus 78 iDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviN-K~Dl~~~~~~~~~~~~l~~~l~~ 156 (482)
T 1wb1_A 78 VDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVIT-KSDNAGTEEIKRTEMIMKSILQS 156 (482)
T ss_dssp CCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEE-CTTSSCHHHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEE-CCCcccchhHHHHHHHHHHHHhh
Confidence 488887766777788888778888888887663 3444455555555 3366666 2221 1 0 0122222
Q ss_pred c----CCeEEEcc-----hhhhhHHHHHHHHhhcCCC-ceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEe
Q 005218 561 A----GIKILMHS-----IIYHLLDDFGNLVVDKAPG-TFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFT 630 (708)
Q Consensus 561 ~----~V~i~~~~-----iIY~L~d~~~~~~~~~~~~-~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~ 630 (708)
. ++.++.-+ -|-+|++.+.+++. ++. .....-.-+.-|..+|.+++.| +|+..+|.+|.++
T Consensus 157 ~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~--~~~~~~~~~~~~~~~v~~v~~~~g~G-------~v~~g~v~~G~l~ 227 (482)
T 1wb1_A 157 THNLKNSSIIPISAKTGFGVDELKNLIITTLN--NAEIIRNTESYFKMPLDHAFPIKGAG-------TVVTGTINKGIVK 227 (482)
T ss_dssp SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH--HSCCCCCSSSCCBCBCSCEECCSSCC-------CEECCCCCBSCCC
T ss_pred hcccccceEEEEECcCCCCHHHHHHHHHHhhc--CccccccccccccccceeEEEecCCc-------eEEEEEEEEeEEe
Confidence 3 45555433 45677777766554 110 1111111234566789888776 7888899999999
Q ss_pred eCCeEEEeeCCeEEEEEEEeeeeccccccceeccCCeEEEEEccc--CCCCCCCEE
Q 005218 631 RSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDW--HDFQVGDII 684 (708)
Q Consensus 631 ~~~~~rv~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~~~~--~~~~~gD~i 684 (708)
.|+.+.++..+.. .+|.||+.+.++|+++..|+-||+.+.+. .+++.||+|
T Consensus 228 ~gd~v~~~p~~~~---~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 228 VGDELKVLPINMS---TKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXIL 280 (482)
T ss_dssp SSEEECCTTTCCC---EEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBC
T ss_pred eCCEEEECCCCcE---EEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceE
Confidence 9999988776654 59999999999999999999999999885 478999999
No 265
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.24 E-value=0.0016 Score=71.55 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=39.3
Q ss_pred CCeeEEEeeCCCcchhhh-hhh-----cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCC
Q 005218 235 TGASITFLDTPGHAAFSA-MRK-----RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKP 302 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~-~~~-----~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~ 302 (708)
.++.+.|+||||.-.... ... ..+-.+|.+++|+|+..+ ......+..... ..+ .-+|+||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 567899999999543211 111 112358899999999864 233333333322 233 56789999973
No 266
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.96 E-value=0.0029 Score=68.04 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL 214 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~ 214 (708)
.+-.++|+|++|+|||||+|.|.+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 567899999999999999999987654
No 267
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.93 E-value=0.005 Score=64.56 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=35.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcccc-cccC-------ceEEeeeEEEEEecCCeeEEEeeCCCcchh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSLVA-KEAG-------GITQHMGAFVVGMSTGASITFLDTPGHAAF 250 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~~~-~~~~-------gtT~di~~~~v~~~~g~~v~liDTpG~~~f 250 (708)
.+..++++|++|+|||||+|.|. ..... .... .+|+... .... . ..-.++||||...+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~-~-~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPF-G-KGSFVGDTPGFSKV 229 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEE-T-TTEEEESSCCCSSC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEc-C-CCcEEEECcCcCcC
Confidence 56789999999999999999998 54321 2221 1332221 1222 1 12467899997644
No 268
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.83 E-value=0.006 Score=65.49 Aligned_cols=84 Identities=25% Similarity=0.250 Sum_probs=50.1
Q ss_pred ccccccEEEEEEEccCCCC-hhHHH-HHHHhhhcCCCEEEEEeCCCCCCCCcch-hhhhhhhcccchhccCCcceEEEEe
Q 005218 257 GAAVTDIVVLVVAADDGVM-PQTLE-AIAHANAANVPIVVAINKCDKPAADPER-VKNQLGAEGLELEDWGGKVQVVEVS 333 (708)
Q Consensus 257 ~~~~aDivllVvDa~~g~~-~q~~~-~l~~l~~~~~piIvViNK~Dl~~~~~~~-~~~~l~~~~~~~~~~~~~~~vi~vS 333 (708)
.+.++|.+++|.+ ..+.. ...++ .+..+...++|.++|+||+||.+..... ....+. .+... .++++++|
T Consensus 127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~----~y~~~--G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMD----IYRNI--GYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHH----HHHTT--TCCEEECB
T ss_pred HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHH----HHHhC--CCcEEEEe
Confidence 4689999997754 44322 22221 2222345689999999999996421100 111111 11111 34789999
Q ss_pred eecCCCchhHHHHH
Q 005218 334 AVKKTGLDDLEVAL 347 (708)
Q Consensus 334 Aktg~GI~~L~~~I 347 (708)
|.+|.|+++|...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999887643
No 269
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.75 E-value=0.002 Score=63.37 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=40.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc--cccccCceEEeeeEEEEEecCCeeEEEeeCCCc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHMGAFVVGMSTGASITFLDTPGH 247 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~--~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~ 247 (708)
++..|+|+|++|+|||||++.|+.... .......||+...... . +|..+.++|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~-~G~~y~fvs~~~f 76 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--E-DGKEYHFISTEEM 76 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--C-TTSSCEECCHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--e-ccccceeccHHHh
Confidence 667899999999999999999986532 2244566777654332 2 6777778877653
No 270
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.50 E-value=0.0058 Score=63.98 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCcc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTSL 214 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~~ 214 (708)
.+-.++++|++|+|||||+|.|.+...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc
Confidence 467899999999999999999987554
No 271
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.33 E-value=0.009 Score=62.42 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=46.8
Q ss_pred CCeeEEEeeCCCcchhh--hhhh----cccccccEEEEEEEccCCCChhHHHHHHHhhhcCCC-EEEEEeCCCCCCCCcc
Q 005218 235 TGASITFLDTPGHAAFS--AMRK----RGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVP-IVVAINKCDKPAADPE 307 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~--~~~~----~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~p-iIvViNK~Dl~~~~~~ 307 (708)
.++.+.|+||||.-... .+.. ...-.+|.+++|+|+..+ .+..+.+..... ..+ .-+|+||+|... ...
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~~g 254 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-RGG 254 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-SCH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-cHH
Confidence 46789999999853221 1111 111248888999998753 333343333332 233 457899999742 111
Q ss_pred hhhhhhhhcccchhccCCcceEEEEeeecCCCchhH
Q 005218 308 RVKNQLGAEGLELEDWGGKVQVVEVSAVKKTGLDDL 343 (708)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~~~~vi~vSAktg~GI~~L 343 (708)
........ + ..|+.+++ +|+++++|
T Consensus 255 ~~~~~~~~-------~--~~pi~~i~--~g~~~~dl 279 (295)
T 1ls1_A 255 AALSARHV-------T--GKPIYFAG--VSEKPEGL 279 (295)
T ss_dssp HHHHHHHH-------H--CCCEEEEC--------CC
T ss_pred HHHHHHHH-------H--CcCEEEEe--CCCCcccc
Confidence 22222111 1 24677665 56667655
No 272
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.32 E-value=0.0064 Score=59.98 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=45.3
Q ss_pred CCeeEEEeeCCCc-chhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhh-cCCCEEEEEeCCCCCC
Q 005218 235 TGASITFLDTPGH-AAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANA-ANVPIVVAINKCDKPA 303 (708)
Q Consensus 235 ~g~~v~liDTpG~-~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~-~~~piIvViNK~Dl~~ 303 (708)
..+.+.++|||+. ... .....+..+|.+|+++..+..........+..+.. .+.++.+++|++|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 5678999999986 332 23345678999999998764333333444455544 2678899999999743
No 273
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.31 E-value=0.0031 Score=70.27 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeee--EEEEEecCC-eeEEEeeCCCcchh--hhhh-------
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMG--AFVVGMSTG-ASITFLDTPGHAAF--SAMR------- 254 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~--~~~v~~~~g-~~v~liDTpG~~~f--~~~~------- 254 (708)
..+..|+++|.||+||||+..+|....... ..+ |..+. .......++ ....+||+.|.+.+ ...+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~--t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVP--TREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCC--EEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCC--ceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999997542210 011 11110 000000011 34467899997433 2221
Q ss_pred -hcccccccEEEEEEEccCCCChhHHHHH-HHhhhcCCCEEEEEeCCC
Q 005218 255 -KRGAAVTDIVVLVVAADDGVMPQTLEAI-AHANAANVPIVVAINKCD 300 (708)
Q Consensus 255 -~~~~~~aDivllVvDa~~g~~~q~~~~l-~~l~~~~~piIvViNK~D 300 (708)
..++..++..++|+|+++. ....+..| ..+...+.+++++-..++
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~~vv~l~~~~~ 160 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGYKTFFVESICV 160 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCCcEEEEEEECC
Confidence 2344557788999999875 34444443 344445666655544444
No 274
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.18 E-value=0.027 Score=60.44 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..++-.++++|+.|+|||||++.|.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHh
Confidence 34567899999999999999999854
No 275
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=94.95 E-value=0.22 Score=57.08 Aligned_cols=180 Identities=16% Similarity=0.195 Sum_probs=111.1
Q ss_pred cccccHHHHHHHHHhCCCCceEEEEEEecCC--CCCHhhHHhHHhcCCEEEEeCCCCCc------hhHHHHHHHcCCe--
Q 005218 495 DVQGTVQAVTDALKTLNSPQLFVNVVHVGVG--SVTQSDVDLAQACGACIVGFNVKSPP------TSVSQAATQAGIK-- 564 (708)
Q Consensus 495 d~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG--~it~sDv~~A~~~~a~Il~Fnv~~~~------~~~~~~a~~~~V~-- 564 (708)
|+-|..+-.......+..-+.-+=|+.+.-| +-|..-...|...+-.++-|--|++. ....++++..+..
T Consensus 77 DTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 77 DTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDAT 156 (599)
T ss_dssp ECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCT
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcc
Confidence 7777655444444444445667777877555 44455566666667666666555543 1234555655653
Q ss_pred -EEEcc-----hhhhhHHHHHHHHhhcCCCce-eeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEE
Q 005218 565 -ILMHS-----IIYHLLDDFGNLVVDKAPGTF-ETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRL 637 (708)
Q Consensus 565 -i~~~~-----iIY~L~d~~~~~~~~~~~~~~-~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv 637 (708)
++.-+ -|-+|++.+.+ .+++.. ...-.-.|.|..++.-+..| .++-++|.+|+++.|..+.+
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~----~lp~p~~~~~~p~~alI~d~~~d~~~G-------~v~~~rV~sG~l~~Gd~v~~ 225 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVR----DIPPPEGDPEGPLQALIIDSWFDNYLG-------VVSLIRIKNGTLRKGDKVKV 225 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHH----HSCCCCCCTTSCCEEEEEEEEEETTTE-------EEEEEEEEESCEESSCEEEE
T ss_pred eEEEeecccCCCchhHHHHHhh----cCCCccccccCCceeeeeecccccccc-------EEEEEEEEeCEEecCCEEEe
Confidence 33222 34555555543 333221 11111234455555545555 89999999999999999999
Q ss_pred eeCCeEEEEEEEeeeeccccccceeccCCeEEEEE---cccCCCCCCCEEEE
Q 005218 638 LRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVI---RDWHDFQVGDIIQC 686 (708)
Q Consensus 638 ~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~~---~~~~~~~~gD~ie~ 686 (708)
++.|...-.++|..+.-...++.++.+|+ .|..+ .+..++..||.|-.
T Consensus 226 ~~~~~~~~v~~i~~~~~~~~~~~~~~aGd-i~~~~~gi~~~~~~~~GDtl~~ 276 (599)
T 3cb4_D 226 MSTGQTYNADRLGIFTPKQVDRTELKCGE-VGWLVCAIKDIHGAPVGDTLTL 276 (599)
T ss_dssp TTTCCEEECCEEEEESSSEEECSEECTTC-EEEEECCCSSGGGSCTTCEEEE
T ss_pred ccccceeEEeeeeeccCCceECCEEcCCC-eeEeeccccccccCccCCEeee
Confidence 99887654456666665678899999999 44444 34569999999964
No 276
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.84 E-value=0.062 Score=55.82 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=40.7
Q ss_pred CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhh----cCCCEE-EEEeCCCC
Q 005218 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANA----ANVPIV-VAINKCDK 301 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~----~~~piI-vViNK~Dl 301 (708)
..+.+.++|||+.-.... ....+..+|.+|+|+..+..........+..+.. .+.+++ +|+|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 457899999988533221 2234678999999997654222233333444433 345544 89999984
No 277
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.65 E-value=0.012 Score=57.35 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+..++|+|++|+|||||++.|.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999999763
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.57 E-value=0.017 Score=55.39 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++..++|+|++|+|||||++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999764
No 279
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.45 E-value=0.07 Score=58.84 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=51.5
Q ss_pred CEEEEEecCCCCchHHHHHhhc------------------Ccccc-cccCceEEeee----EEEEEecC--CeeEEEeeC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ------------------TSLVA-KEAGGITQHMG----AFVVGMST--GASITFLDT 244 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~------------------~~~~~-~~~~gtT~di~----~~~v~~~~--g~~v~liDT 244 (708)
..|+|+|..++|||+|+|.|+. .-+.. ......|..+- ...+..++ +..+.|+||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 4678999999999999996641 12222 11122333322 12222223 357999999
Q ss_pred CCcchhhhh-------hhcccccccEEEEEEEccCCCChhHHHHHHHh
Q 005218 245 PGHAAFSAM-------RKRGAAVTDIVVLVVAADDGVMPQTLEAIAHA 285 (708)
Q Consensus 245 pG~~~f~~~-------~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l 285 (708)
.|..+.... ....+--+++.|| .....+..++++.+...
T Consensus 148 EG~~d~~~~~~~d~~ifaLa~LLSS~~Iy--N~~~~i~~~~L~~L~~~ 193 (457)
T 4ido_A 148 QGTFDSQSTLRDSATVFALSTMISSIQVY--NLSQNVQEDDLQHLQLF 193 (457)
T ss_dssp CCBTCTTCCHHHHHHHHHHHHHHCSEEEE--EEESSCCHHHHHHHHHH
T ss_pred cCCCCcccCccccHHHHHHHHHHhhheee--cccccCCHHHHHHHHHH
Confidence 996433211 1111223555554 44455677777776554
No 280
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.31 E-value=0.48 Score=54.22 Aligned_cols=181 Identities=17% Similarity=0.184 Sum_probs=108.1
Q ss_pred cccccHHHHHHHHHhCCCCceEEEEEEecCCC--CCHhhHHhHHhcCCEEEEeCCCCCch------hHHHHHHHcCCe--
Q 005218 495 DVQGTVQAVTDALKTLNSPQLFVNVVHVGVGS--VTQSDVDLAQACGACIVGFNVKSPPT------SVSQAATQAGIK-- 564 (708)
Q Consensus 495 d~~GslEAi~~~l~~~~~~~v~i~Iv~~~VG~--it~sDv~~A~~~~a~Il~Fnv~~~~~------~~~~~a~~~~V~-- 564 (708)
|+-|..+=..+....+..-+.-+=|+.+.-|. -|..-...|...+-.++-|--|++.. ...++++..+..
T Consensus 79 DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~ 158 (600)
T 2ywe_A 79 DTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPE 158 (600)
T ss_dssp CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGG
T ss_pred ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcc
Confidence 67676554334444444555667777776553 23344455666666666555555431 223455544542
Q ss_pred -EEEc-----chhhhhHHHHHHHHhhcCCCcee-eeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEE
Q 005218 565 -ILMH-----SIIYHLLDDFGNLVVDKAPGTFE-TQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRL 637 (708)
Q Consensus 565 -i~~~-----~iIY~L~d~~~~~~~~~~~~~~~-~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv 637 (708)
++.- .-|-+|++.+-+++ .+|... .... .+.|..++.-+..| .|+-++|.+|.+++|..+.+
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~l---p~p~~~~~~pl-~~lV~~~~~d~~~G-------~v~~~rV~sG~l~~Gd~I~~ 227 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRI---PPPKGDPQKPL-KALIFDSYYDPYRG-------AVAFVRIFDGEVKPGDKIML 227 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHS---CCCCCCTTSCC-EEEEEEEEEETTTE-------EEEEEEEEESEECTTCEEEE
T ss_pred cEEEEEeecCCCchHHHHHHHHhc---ccccccccCCc-ceeEEEEeecccce-------EEEEEEEEeCEEecCCEEEe
Confidence 2222 23455665554333 222211 1222 35555666555554 89999999999999999999
Q ss_pred eeCCeEEEEEEEeeeeccccccceeccCCeEEEE--EcccCCCCCCCEEEE
Q 005218 638 LRSGEVVFEGSCISLKREKQDVDTVAKGNECGLV--IRDWHDFQVGDIIQC 686 (708)
Q Consensus 638 ~R~~~~i~~g~i~slk~~k~~V~ev~kG~ecgi~--~~~~~~~~~gD~ie~ 686 (708)
+..|+..-.++|..+.-...+++++.+|+-+.+. +.+..++..||.|-.
T Consensus 228 ~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~ 278 (600)
T 2ywe_A 228 MSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITH 278 (600)
T ss_dssp TTTTEEEECCEEEEESSSEEEESCEETTCEEEEESSCCCTTSSCTTCEEEE
T ss_pred ccccceEeeecccccCCCceECCEEecCceeeeeccccchhhccCCCEEEe
Confidence 9988765445555555556789999999944433 234679999999964
No 281
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.25 E-value=0.021 Score=54.58 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+++..++|+|++|+|||||++.|.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 345678999999999999999999874
No 282
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.20 E-value=0.023 Score=54.90 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.++..++|+|++|+|||||++.|.+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35678999999999999999999764
No 283
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.03 E-value=0.024 Score=55.53 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+++..|+|+|++|+|||||++.|.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346678999999999999999998764
No 284
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.96 E-value=0.03 Score=54.93 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+++..|+|+|++|+|||||++.|....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 567789999999999999999998654
No 285
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.96 E-value=0.026 Score=55.24 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+.++-.++|+|++|+|||||++.|.+-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567788999999999999999999764
No 286
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.88 E-value=0.028 Score=56.05 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
.+++-.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 5678899999999999999999998643
No 287
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.85 E-value=0.026 Score=54.31 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEEecCCCCchHHHHHhhcC
Q 005218 191 VVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+++|+|++|+|||||++.|.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 288
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.80 E-value=0.031 Score=54.04 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=23.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
.++..|+|+|++|+|||||++.|.+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467789999999999999999997653
No 289
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.80 E-value=0.026 Score=55.98 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++++-.++|+|++|+|||||++.|.+.
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 346778999999999999999999874
No 290
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.77 E-value=0.01 Score=57.84 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=25.2
Q ss_pred EEEEecCCCCchHHHHHhhcCcc--cccccCceEEee
Q 005218 192 VTVMGHVDHGKTSLLDALRQTSL--VAKEAGGITQHM 226 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~~~--~~~~~~gtT~di 226 (708)
|+|+|++|+|||||+++|+.... .....+.|||..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 88999999999999999975432 113345566643
No 291
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=93.75 E-value=0.22 Score=58.15 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=59.1
Q ss_pred eEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeee-ccccccceeccCCeEEEEEcccCCCCCCCEEEE
Q 005218 618 KIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLK-REKQDVDTVAKGNECGLVIRDWHDFQVGDIIQC 686 (708)
Q Consensus 618 ~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk-~~k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie~ 686 (708)
.++-++|.+|++++|+.+...+.++..-.++|..+. +.+.+|+++..|+=|+|. +..++..||.|-.
T Consensus 324 ~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~~~~~Gdtl~~ 391 (691)
T 1dar_A 324 RLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVV--GLKETITGDTLVG 391 (691)
T ss_dssp EEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEE--CCSSCCTTCEEEE
T ss_pred cEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEe--CcccCccCCEEec
Confidence 799999999999999999988888766667888877 578999999999999887 8889999999853
No 292
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.63 E-value=0.028 Score=54.06 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.9
Q ss_pred CEEEEEecCCCCchHHHHHhhcCc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
..++|+|++|+|||||++.|.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998643
No 293
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=93.51 E-value=0.21 Score=56.37 Aligned_cols=64 Identities=20% Similarity=0.308 Sum_probs=53.1
Q ss_pred eEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeecc----ccccceeccCCeEEEEEcccCCCCCCCEEEE
Q 005218 618 KIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKRE----KQDVDTVAKGNECGLVIRDWHDFQVGDIIQC 686 (708)
Q Consensus 618 ~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~----k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie~ 686 (708)
.|+-++|.+|++++|..+.+.+.|+. .+|.+|..+ +++|+++..|+=|||. +..++..||.|-.
T Consensus 314 ~i~~~RV~sG~l~~g~~v~~~~~~~~---~~v~~i~~~~g~~~~~v~~a~aGdiv~i~--~l~~~~~Gdtl~~ 381 (529)
T 2h5e_A 314 RVAFMRVVSGKYEKGMKLRQVRTAKD---VVISDALTFMAGDRSHVEEAYPGDILGLH--NHGTIQIGDTFTQ 381 (529)
T ss_dssp CCEEEEEEESCEETTCEEEETTTTEE---EECSCEECCCC-----CCEECTTCEEEEC--CSSCCCTTCEEES
T ss_pred eEEEEEEecCeEcCCCEEEEeeCCCE---EEeceeeEEeCCCceEcceECCCCEEEEe--ccCCCccCCEeec
Confidence 68999999999999999999999875 477777764 8899999999998875 7889999999853
No 294
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=93.27 E-value=0.37 Score=56.25 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=57.0
Q ss_pred eEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeee-ccccccceeccCCeEEEEEcccCCCCCCCEEEE
Q 005218 618 KIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLK-REKQDVDTVAKGNECGLVIRDWHDFQVGDIIQC 686 (708)
Q Consensus 618 ~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk-~~k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie~ 686 (708)
.++-++|.+|++++|+.+...+.|+..-.++|..+. +.+.+|+++..|+=|+|. +..++..||.|-.
T Consensus 332 ~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--gl~~~~~GdTl~~ 399 (704)
T 2rdo_7 332 NLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAI--GLKDVTTGDTLCD 399 (704)
T ss_pred eEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEe--CcccCccCCEEeC
Confidence 799999999999999999988888765556666665 368899999999999987 7889999999853
No 295
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=93.13 E-value=0.24 Score=55.83 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=54.1
Q ss_pred eEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeec-cccccceeccCCeEEEEEcccCCCCCCCEEE
Q 005218 618 KIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKR-EKQDVDTVAKGNECGLVIRDWHDFQVGDIIQ 685 (708)
Q Consensus 618 ~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~-~k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie 685 (708)
.++-++|.+|++++|..+...|.|+....+.+..+.. .+.+|+++..|+=||+. +..+++.||.|-
T Consensus 313 ~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~--~l~~~~~GDtl~ 379 (528)
T 3tr5_A 313 RIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLH--NHGTIQIGDTFT 379 (528)
T ss_dssp EEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEE--ESSSCCTTCEEE
T ss_pred eEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEc--CCCCCccCCEEc
Confidence 8999999999999999999999998764444443332 57899999999988764 677899999984
No 296
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.08 E-value=0.044 Score=53.36 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
..++..|+|+|++|+|||||.+.|...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 346778999999999999999999753
No 297
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.05 E-value=0.04 Score=53.70 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++..|+|+|++|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999998763
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.04 E-value=0.047 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+++..|+|+|++|+|||||++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999865
No 299
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.96 E-value=0.045 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+..|+|+|++|+|||||++.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
No 300
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.87 E-value=0.05 Score=57.06 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=23.9
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++++-.++|+|++|+|||||++.|.+-
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 467789999999999999999999764
No 301
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=92.85 E-value=0.38 Score=54.98 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHHhhcCCCcee--eeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEE
Q 005218 571 IYHLLDDFGNLVVDKAPGTFE--TQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGS 648 (708)
Q Consensus 571 IY~L~d~~~~~~~~~~~~~~~--~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~ 648 (708)
|-+|++.+..++...+++... ..-...+.|.+++..++.| .++-++|.+|+++.|+.+.+...+... ..+
T Consensus 205 I~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G-------~v~~~rV~~G~Lk~Gd~v~~~~~~~~~-~~r 276 (594)
T 1g7s_A 205 IPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLG-------MTIDAVIYDGILRKDDTIAMMTSKDVI-STR 276 (594)
T ss_dssp HHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEE-------EEEEEEEEESEEETTCEEEEEBSSSEE-EEE
T ss_pred chhHHHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcE-------EEEEEEEeeCEEeeCCEEEECCCCCce-eEE
Confidence 456677776666544432111 1223466777888777766 899999999999999999888766543 457
Q ss_pred Eeeeecc------------ccccceec--cCCeEEEEEcccCCCCCCCEEEEEE
Q 005218 649 CISLKRE------------KQDVDTVA--KGNECGLVIRDWHDFQVGDIIQCLE 688 (708)
Q Consensus 649 i~slk~~------------k~~V~ev~--kG~ecgi~~~~~~~~~~gD~ie~y~ 688 (708)
|.+|... ...|+++. .|..|.+ .+..+...||.+-..+
T Consensus 277 V~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~--~~l~~~~~Gd~l~~~~ 328 (594)
T 1g7s_A 277 IRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA--PGIDDVMAGSPLRVVT 328 (594)
T ss_dssp CCEEEEECCCC----CCCSEEECSEEESSEEEEEEC--SSCTTBCTTCEEEECS
T ss_pred EeEEEeccccchhhhccCCceEccEEcCCCCcEEEE--cccCCCCCCCEEEecC
Confidence 7777542 45788888 6666543 4677889999998764
No 302
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.82 E-value=0.035 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=21.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+++-.++++|++|+|||||++.+..
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc
Confidence 3566799999999999999998653
No 303
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.75 E-value=0.051 Score=54.63 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=24.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+.++-.++|+|+.|+|||||++.|.+-.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4567789999999999999999998753
No 304
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.70 E-value=0.2 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+..+.|.|++|+|||||+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998753
No 305
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.69 E-value=0.055 Score=54.32 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALR 210 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~ 210 (708)
++..|+|+|++|+|||||++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999998
No 306
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=92.57 E-value=0.33 Score=56.59 Aligned_cols=67 Identities=25% Similarity=0.342 Sum_probs=58.1
Q ss_pred eEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeee-ccccccceeccCCeEEEEEcccCCCCCCCEEEE
Q 005218 618 KIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLK-REKQDVDTVAKGNECGLVIRDWHDFQVGDIIQC 686 (708)
Q Consensus 618 ~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk-~~k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie~ 686 (708)
.++-++|.+|++++|+.+...+.|+..-.++|..+. +.+.+|+++..|+=|+|. +..++..||.|-.
T Consensus 324 ~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl~~~~~GdTl~~ 391 (693)
T 2xex_A 324 KLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAV--GLKDTGTGDTLCG 391 (693)
T ss_dssp EEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEE--SCSSCCTTCEEEE
T ss_pred eEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEe--CcccCccCCEEec
Confidence 799999999999999999998888766556666666 568999999999999887 8889999999864
No 307
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.56 E-value=0.051 Score=54.22 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+++-.++|+|+.|+|||||++.|.+-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466789999999999999999998753
No 308
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.48 E-value=0.37 Score=46.30 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=27.2
Q ss_pred cEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCC
Q 005218 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDK 301 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl 301 (708)
+.-++++|=-.-..+.+.+.+..+...++++++.+...|-
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f 115 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTH 115 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeecccc
Confidence 4557777865545455667776666668888888887774
No 309
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.46 E-value=0.057 Score=50.93 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+++-.++++|+.|+|||||++.|.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345579999999999999999998654
No 310
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.41 E-value=0.061 Score=54.17 Aligned_cols=28 Identities=43% Similarity=0.653 Sum_probs=24.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567789999999999999999998753
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.35 E-value=0.043 Score=54.49 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=18.6
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhh-cC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALR-QT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~-~~ 212 (708)
.+++..++|+|++|+|||||++.|. +.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC--
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3467789999999999999999998 64
No 312
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.16 E-value=0.081 Score=51.40 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.2
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
...++..|+|+|.+|+|||||++.|.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4556778999999999999999999764
No 313
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.14 E-value=0.067 Score=54.70 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567789999999999999999998753
No 314
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.98 E-value=0.068 Score=50.35 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+|+|++|+|||||++.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 315
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.97 E-value=0.063 Score=53.72 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+++-.++|+|+.|+|||||++.|.+-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998754
No 316
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.95 E-value=0.073 Score=54.36 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=24.0
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++++-.++|+|+.|+|||||++.|.+-
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357789999999999999999999875
No 317
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.93 E-value=0.079 Score=52.06 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+.+|+|+|++|+||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
No 318
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.91 E-value=0.07 Score=56.09 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.6
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
..++..|+|+|++|+|||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456788999999999999999998763
No 319
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.89 E-value=0.076 Score=49.25 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.8
Q ss_pred CEEEEEecCCCCchHHHHHh
Q 005218 190 PVVTVMGHVDHGKTSLLDAL 209 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L 209 (708)
+.|+|+|+||+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 320
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.87 E-value=0.083 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
..+.++|+|++|+|||||+++|...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999864
No 321
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.86 E-value=0.076 Score=54.41 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3567789999999999999999998753
No 322
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.84 E-value=0.082 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|+|++|+||||+...|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 323
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.81 E-value=0.067 Score=54.01 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=24.0
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++.+-.++|+|+.|+|||||++.|.+-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3466789999999999999999998754
No 324
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.80 E-value=0.067 Score=54.53 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=24.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467789999999999999999998754
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.79 E-value=0.072 Score=51.66 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.++..|+|+|++|+|||||.+.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998654
No 326
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.73 E-value=0.069 Score=54.13 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+++-.++|+|+.|+|||||++.|.+-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998753
No 327
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.71 E-value=0.081 Score=53.97 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=24.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567789999999999999999998753
No 328
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.68 E-value=0.071 Score=54.70 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=24.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3467789999999999999999998753
No 329
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.65 E-value=0.082 Score=54.35 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567789999999999999999998753
No 330
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.63 E-value=0.065 Score=53.16 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+++-.++|+|+.|+|||||++.|.+-.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466689999999999999999998753
No 331
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.62 E-value=0.07 Score=55.05 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=24.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3467789999999999999999998743
No 332
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.58 E-value=0.086 Score=50.21 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=21.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+++..|+++|.||+||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 333
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.57 E-value=0.077 Score=53.33 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.+++..|+|+|+.|+|||||++.|.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999876
No 334
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.56 E-value=0.1 Score=50.24 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++..|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999764
No 335
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.56 E-value=0.074 Score=53.60 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=23.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+++-.++|+|+.|+|||||++.|.+-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466789999999999999999998753
No 336
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.51 E-value=0.067 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++..++++|++|+|||||+..+.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999998764
No 337
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.49 E-value=0.089 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.+..|+|+|.+|+|||||.+.|..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 338
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.47 E-value=0.089 Score=53.94 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++++-.++|+|+.|+|||||++.|.+-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456778999999999999999999885
No 339
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.38 E-value=0.079 Score=49.74 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=20.2
Q ss_pred CEEEEEecCCCCchHHHHHhhc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..|++.|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 340
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.38 E-value=0.084 Score=50.43 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.8
Q ss_pred CEEEEEecCCCCchHHHHHhhc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..++++|++|+|||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999975
No 341
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.36 E-value=0.08 Score=53.70 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.++-.++|+|+.|+|||||++.|.+-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46678999999999999999999875
No 342
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.35 E-value=0.08 Score=53.78 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+++-.++|+|+.|+|||||++.|.+-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456689999999999999999998753
No 343
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.32 E-value=0.081 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=23.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++++-.++|+|++|+|||||++.|..
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 46778899999999999999998873
No 344
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.30 E-value=0.094 Score=53.70 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=24.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+.++-.++|+|+.|+|||||++.|.+-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3567789999999999999999998753
No 345
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.26 E-value=0.094 Score=48.82 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCchHHHHHhhc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..|+|.|.+|+||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 346
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.21 E-value=0.085 Score=53.92 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=23.0
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+++-.++|+|++|+|||||++.|.+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 345668999999999999999999763
No 347
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.20 E-value=0.1 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCCchHHHHHhhc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+..|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999864
No 348
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.18 E-value=0.096 Score=51.64 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=22.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++-.++|+|+.|+|||||++.|.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999876
No 349
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.17 E-value=0.092 Score=52.98 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcCc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
-.++|+|+.|+|||||++.|.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998753
No 350
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=91.12 E-value=0.33 Score=56.33 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=57.6
Q ss_pred ceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeec----cccccceeccCCeEEEEE
Q 005218 597 EAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKR----EKQDVDTVAKGNECGLVI 672 (708)
Q Consensus 597 ~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~----~k~~V~ev~kG~ecgi~~ 672 (708)
.|.|-+++.-+.+| .++-++|.+|++++|+.+.+.+ + ..+|.+|.. .+.+|+++..|+=|+|.
T Consensus 285 ~~~V~k~~~d~~~G-------~~~~~rV~sG~l~~g~~v~~~~--~---~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~- 351 (665)
T 2dy1_A 285 LAKVFKVQVDPFMG-------QVAYLRLYRGRLKPGDSLQSEA--G---QVRLPHLYVPMGKDLLEVEEAEAGFVLGVP- 351 (665)
T ss_dssp EEEEEEEEEETTTE-------EEEEEEEEESEECTTEEEBCTT--S---CEEESSEEEEETTEEEEESCEETTCEEEES-
T ss_pred EEEEEEEEEcCCCC-------eEEEEEEcccEEecCCEEEcCC--C---eEEEeEEEEEeCCCeeECCEECCCCEEEEe-
Confidence 35556666555555 7999999999999999987665 2 134555443 67899999999999886
Q ss_pred cccCCCCCCCEEEE
Q 005218 673 RDWHDFQVGDIIQC 686 (708)
Q Consensus 673 ~~~~~~~~gD~ie~ 686 (708)
+.+++..||.|-.
T Consensus 352 -gl~~~~~Gdtl~~ 364 (665)
T 2dy1_A 352 -KAEGLHRGMVLWQ 364 (665)
T ss_dssp -SCTTCCTTCEEES
T ss_pred -CCccCccCCEEec
Confidence 7788999999853
No 351
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.11 E-value=0.086 Score=54.48 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467789999999999999999998754
No 352
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.08 E-value=0.29 Score=49.47 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=45.8
Q ss_pred CCeeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEE-EEEeCCCC
Q 005218 235 TGASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDK 301 (708)
Q Consensus 235 ~g~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piI-vViNK~Dl 301 (708)
..+.+.|+|||+.-.........+..+|.+|+|+..+..........+..+...+.+++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 45789999999854321111112236899999998776554555666666767788877 99999984
No 353
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.08 E-value=0.092 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.3
Q ss_pred CEEEEEecCCCCchHHHHHhhcC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
-.++|+|++|+|||||++.|.+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999998764
No 354
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.05 E-value=0.22 Score=54.36 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=22.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
..+..|+++|.||+||||+...|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999998753
No 355
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.05 E-value=0.1 Score=50.12 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
...++..|+|+|.+|+||||+.+.|...
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 3456678999999999999999999764
No 356
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.03 E-value=0.12 Score=49.42 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.8
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+++.+|+++|.+|+||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45778999999999999999998754
No 357
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.00 E-value=0.09 Score=53.47 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+++-.++|+|+.|+|||||++.|.+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466789999999999999999998754
No 358
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.97 E-value=0.077 Score=51.99 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++++-.++|+|++|+|||||++.|.+.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456678999999999999999999763
No 359
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.97 E-value=0.11 Score=48.29 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+..++|+|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999764
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.74 E-value=0.13 Score=49.06 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|+|.+|+||||+...|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999864
No 361
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.69 E-value=0.12 Score=53.74 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3567789999999999999999998753
No 362
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.66 E-value=0.14 Score=49.71 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|.|.+|+||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999964
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.63 E-value=0.11 Score=50.37 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|+|++|+|||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 364
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.60 E-value=0.11 Score=50.22 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.3
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+|.|.||+||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999965
No 365
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.57 E-value=0.13 Score=48.30 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=20.7
Q ss_pred CCEEEEEecCCCCchHHHHHhhc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+..|.+.|.+|+||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 366
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.53 E-value=0.16 Score=49.17 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=22.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4578899999999999999999965
No 367
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.52 E-value=0.081 Score=55.47 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.4
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++.+-.++|+|+.|+|||||++.|.+-.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4577899999999999999999998643
No 368
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=90.44 E-value=0.081 Score=59.80 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=75.7
Q ss_pred hhhhhHHHHHHHHhhcCCCceeeeeeeceeEeeEEEeCCCCCCCCCCceEEEEEEEecEEeeCCeEEEeeCCeEEEEEEE
Q 005218 570 IIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSC 649 (708)
Q Consensus 570 iIY~L~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~~~~~~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i 649 (708)
-|.+|++.+..++.. +++.....-...+.|..+|..+++| +|+-..|.+|.+++|+.+ + -|.. .++|
T Consensus 154 GI~eLle~I~~l~~~-~~~~~~~~~~~~~~V~e~~~~~g~G-------~V~~g~V~~G~l~~Gd~v--~-~g~~--~~kV 220 (537)
T 3izy_P 154 NMMALAEATIALAEM-LELKADPTGAVEGTVIESFTDKGRG-------PVTTAIIQRGTLRKGSIL--V-AGKS--WAKV 220 (537)
T ss_dssp SSHHHHHHHHHHHTT-CCCCCCSSSSEEEEEEEECCCTTCC-------CCEEEEEEEECCSSEEEE--C-CSSC--CEEE
T ss_pred CchhHHHHHHHhhhc-ccccCCCCCCcceeEEEEEEeCCCc-------eEEEEEEecCEEEcCCEE--E-eCCc--eEEE
Confidence 356777777666542 3333333334556778888877766 799999999999999975 2 2332 2799
Q ss_pred eeeeccc-cccceeccCCeEEEEEcccCCC-CCCCEEEEEEE
Q 005218 650 ISLKREK-QDVDTVAKGNECGLVIRDWHDF-QVGDIIQCLEQ 689 (708)
Q Consensus 650 ~slk~~k-~~V~ev~kG~ecgi~~~~~~~~-~~gD~ie~y~~ 689 (708)
.+|..++ ++|+++..|+-|+|. ++++. ..||.|-..+.
T Consensus 221 r~i~~~~g~~v~~A~~G~~V~i~--g~~~~~~~Gd~l~~~~~ 260 (537)
T 3izy_P 221 RLMFDENGRAVNEAYPSMPVGII--GWRDLPSAGDEILEVES 260 (537)
T ss_dssp EEEEECCCCCSCCSCCSTTCCCC--SSEEEEEEESSCCSCCS
T ss_pred EEEEcCCCCCCcEEcCCCEEEEE--CCCCCCCCCCEEEecCC
Confidence 9999875 899999999999874 66664 77888877643
No 369
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.37 E-value=0.13 Score=50.62 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 370
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.35 E-value=0.13 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=20.2
Q ss_pred CEEEEEecCCCCchHHHHHhhc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.+|+|+|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999976
No 371
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.30 E-value=0.14 Score=50.31 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+|+|.||+||||+...|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 372
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.30 E-value=0.11 Score=49.40 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+++|.+|+||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 373
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.26 E-value=0.16 Score=49.03 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.4
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..++..|+|+|.||+||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999864
No 374
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.18 E-value=0.15 Score=48.31 Aligned_cols=25 Identities=28% Similarity=0.289 Sum_probs=21.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|+|.+|+||||+...|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4567899999999999999999863
No 375
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.09 E-value=0.13 Score=53.75 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.++..|+|+|++|+|||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998763
No 376
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.09 E-value=0.12 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+|.|.||+||||+...|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998864
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.96 E-value=0.15 Score=51.47 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=22.3
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|+|++|+|||||++.|..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999973
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.93 E-value=0.15 Score=50.30 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 379
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.91 E-value=0.15 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCCchHHHHHhhc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+..|+++|++|+||||+...|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999854
No 380
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.87 E-value=0.15 Score=48.90 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999865
No 381
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.82 E-value=0.14 Score=49.62 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.1
Q ss_pred CEEEEEecCCCCchHHHHHhhc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..|+|+|++|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 382
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.82 E-value=0.15 Score=48.34 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=19.4
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
.|+|.|.||+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 383
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.76 E-value=0.16 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+.+.++|+|++|+|||||+.+|..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999875
No 384
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.71 E-value=0.15 Score=52.21 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.7
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++ +-.++|+|+.|+|||||++.|.+-.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 34 6789999999999999999998764
No 385
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.69 E-value=0.16 Score=54.42 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.5
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSL 214 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~ 214 (708)
++++-.++|+|+.|+|||||++.|.+-..
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34667899999999999999999987543
No 386
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.69 E-value=0.082 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.6
Q ss_pred CEEEEEecCCCCchHHHHHhhcC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
..++|+|++|+|||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 387
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.68 E-value=0.17 Score=50.37 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=23.5
Q ss_pred CCCCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 184 EILPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 184 ~~~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+.++++..|.|+|+||+||+|+...|..
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456777888999999999999999874
No 388
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.68 E-value=0.16 Score=54.62 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=24.6
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4577899999999999999999998754
No 389
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.66 E-value=0.71 Score=51.72 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+..+.|.|+||+|||||+.++...
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999754
No 390
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.66 E-value=0.16 Score=50.61 Aligned_cols=40 Identities=5% Similarity=-0.068 Sum_probs=26.0
Q ss_pred cEEEEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCC
Q 005218 262 DIVVLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDK 301 (708)
Q Consensus 262 DivllVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl 301 (708)
+.-++++|--.-......+.+..+...++|+|+++-..|-
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNF 128 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCT
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 3446667765544445555666655668888888887775
No 391
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.62 E-value=0.14 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=23.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+++..|+|.|+.|+|||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 56778999999999999999999764
No 392
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.55 E-value=0.15 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+++|.+|+||||+...|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999865
No 393
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.54 E-value=0.15 Score=53.85 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|+|++|+|||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 394
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.52 E-value=0.15 Score=53.02 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=22.0
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|+|++|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998865
No 395
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.51 E-value=0.16 Score=54.44 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+-.++|+|++|+|||||++.|.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999999864
No 396
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.45 E-value=0.48 Score=43.29 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+..|.|.|+||+|||+|..++...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999998754
No 397
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.41 E-value=0.16 Score=56.30 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=23.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++..++|+|+.|+|||||++.|.+-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 56789999999999999999998754
No 398
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.39 E-value=0.17 Score=54.26 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=24.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3466789999999999999999998753
No 399
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.31 E-value=0.18 Score=48.16 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+|.|.||+||||+...|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.28 E-value=0.15 Score=49.78 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++++-.++|+|++|+|||||+..|...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 456778999999999999999998743
No 401
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.26 E-value=0.16 Score=51.02 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=22.1
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++.+|+|.|+||+||||+...|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
No 402
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.20 E-value=0.18 Score=54.15 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=24.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3467789999999999999999998754
No 403
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.14 E-value=0.18 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.4
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+-.++|+|++|+|||||++.|.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 404
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.04 E-value=0.17 Score=47.80 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=16.8
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999863
No 405
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.04 E-value=0.17 Score=47.81 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+++|.+|+||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999865
No 406
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.02 E-value=0.19 Score=54.20 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=24.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3567789999999999999999998754
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.00 E-value=0.21 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++++-.++|+|++|+|||||+..|..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 56778899999999999999999987
No 408
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.92 E-value=0.16 Score=54.25 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+++-.++|+|+.|+|||||++.|.+-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 466789999999999999999998754
No 409
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.88 E-value=0.19 Score=54.22 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=24.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3466789999999999999999998754
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.78 E-value=0.22 Score=51.33 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++++-.++|+|++|+|||||+..|.+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 456778999999999999999998754
No 411
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.69 E-value=0.2 Score=49.01 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 412
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.54 E-value=0.2 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+++|+||+|||||...|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999975
No 413
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.52 E-value=0.2 Score=48.29 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|.|.+|+||||+...|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999864
No 414
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.51 E-value=0.21 Score=48.66 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
+|+|.|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 415
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.49 E-value=0.24 Score=46.25 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.0
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+..+.|.|++|+|||+|+..+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998754
No 416
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.45 E-value=0.2 Score=52.29 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.4
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..++-.++++|+.|+|||||++.|.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34667899999999999999999854
No 417
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.41 E-value=0.19 Score=54.05 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.2
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+.+-.++|+|++|+|||||++.|.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34557999999999999999999763
No 418
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.41 E-value=0.19 Score=54.21 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.6
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+++-.++|+|+.|+|||||++.|.+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 466789999999999999999998754
No 419
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.21 E-value=0.22 Score=55.97 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+-.++|+|++|+|||||+++|++.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5667999999999999999999864
No 420
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.17 E-value=0.21 Score=47.33 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred CEEEEEecCCCCchHHHHHhhc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+.|+|+|.||+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999864
No 421
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.17 E-value=0.22 Score=48.61 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=19.3
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
+|+|+|.||+||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 422
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.14 E-value=0.21 Score=50.70 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+++|.||+||||+...|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
No 423
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.13 E-value=0.24 Score=53.73 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.9
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++++-.++|+|+.|+|||||++.|.+-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 457788999999999999999999874
No 424
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.04 E-value=0.23 Score=49.46 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+|.|.+|+||||+++.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4677899999999999999999975
No 425
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.03 E-value=0.23 Score=48.67 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+|+|.||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999864
No 426
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.91 E-value=0.25 Score=46.74 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCCchHHHHHhhc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+..|+|.|.+|+||||+...|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 427
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.90 E-value=0.22 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
-.++|+|++|+|||||++.|.+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999763
No 428
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.90 E-value=0.18 Score=50.90 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.4
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..++..|+++|+||+||||+...|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999865
No 429
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=87.86 E-value=0.17 Score=54.09 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=24.0
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3466789999999999999999998754
No 430
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.82 E-value=0.18 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 668999999999999999999764
No 431
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.81 E-value=0.24 Score=48.34 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++..|+++|.+|+||||+...|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999865
No 432
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.76 E-value=0.23 Score=46.75 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
+|+|+|.||+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 433
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.61 E-value=0.29 Score=49.04 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.9
Q ss_pred EEEEEecCCCCchHHHHHhhcC
Q 005218 191 VVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.++|+|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999863
No 434
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.59 E-value=0.29 Score=50.22 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=19.5
Q ss_pred EEEEecCCCCchHHHHHhhcC
Q 005218 192 VTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~ 212 (708)
++++|+||+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 435
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.56 E-value=0.22 Score=49.10 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.7
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++++-.++|+|++|+|||||+..|...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456778999999999999999999863
No 436
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.53 E-value=0.14 Score=49.54 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.2
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
.|+|.|.+|+|||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 437
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.43 E-value=0.29 Score=52.81 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.+.+..++|+|++|+|||||++.|.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45667899999999999999999985
No 438
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.42 E-value=0.28 Score=49.30 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..++..|+|.|++|+||||+.+.|..
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999864
No 439
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.25 E-value=0.31 Score=48.34 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..++..|+|+|.||+||||+...|..
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999865
No 440
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.16 E-value=0.24 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.4
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
-+.++|+|..|+|||||++.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 457899999999999999999864
No 441
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.08 E-value=0.16 Score=54.34 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=24.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
++++-.++|+|+.|+|||||++.|.+-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3466789999999999999999998754
No 442
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.03 E-value=0.28 Score=49.82 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.7
Q ss_pred CCEEEEEecCCCCchHHHHHhhc
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+.+|+|+|.+|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999854
No 443
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.98 E-value=0.3 Score=47.69 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=19.4
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
+|+|.|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 444
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.83 E-value=0.36 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.5
Q ss_pred CEEEEEecCCCCchHHHHHhhc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~ 211 (708)
-..+|+|+.|+|||||+++|..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999853
No 445
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.78 E-value=0.29 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.7
Q ss_pred CEEEEEecCCCCchHHHHHhhcC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
..++++|+||+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999764
No 446
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.71 E-value=0.31 Score=46.11 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.3
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 447
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.58 E-value=0.31 Score=45.18 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.3
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 448
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.48 E-value=1.2 Score=46.74 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=48.5
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCcccccccCceEEeeeEEEEEecCCeeEEEeeCCCcchhhhhhhcccccccEEE
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTSLVAKEAGGITQHMGAFVVGMSTGASITFLDTPGHAAFSAMRKRGAAVTDIVV 265 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~~~~~~~~gtT~di~~~~v~~~~g~~v~liDTpG~~~f~~~~~~~~~~aDivl 265 (708)
++++ .+.|.|+|++|||||+-.++..-.. . . .+..+.++||.+.-.-......++...++.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~--~--------------g-~g~~vlyId~E~s~~~~ra~~lGvd~d~ll- 86 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMR--Q--------------Y-PDAVCLFYDSEFGITPAYLRSMGVDPERVI- 86 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHH--H--------------C-TTCEEEEEESSCCCCHHHHHHTTCCGGGEE-
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHh--c--------------C-CCceEEEEeccchhhHHHHHHhCCCHHHeE-
Confidence 4567 7999999999999998776532111 0 0 245678899887433222222334333433
Q ss_pred EEEEccCCCChhH-HHHHHHh--hhcCCCEEEEE
Q 005218 266 LVVAADDGVMPQT-LEAIAHA--NAANVPIVVAI 296 (708)
Q Consensus 266 lVvDa~~g~~~q~-~~~l~~l--~~~~~piIvVi 296 (708)
+...++ .++. .+.+..+ ...+.|-++|+
T Consensus 87 -v~~~~~--~E~~~l~i~~~l~~i~~~~~~lvVI 117 (333)
T 3io5_A 87 -HTPVQS--LEQLRIDMVNQLDAIERGEKVVVFI 117 (333)
T ss_dssp -EEECSB--HHHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred -EEcCCC--HHHHHHHHHHHHHHhhccCceEEEE
Confidence 333332 2233 4444444 23456766665
No 449
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.46 E-value=0.29 Score=46.62 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 450
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=86.22 E-value=1.1 Score=38.54 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=60.4
Q ss_pred eeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcc-----ccceEEEEecccCCcccccCCCCcEEEe--ccCCCCCCCC
Q 005218 366 AYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH-----EWGRIRAIRDMVGKSTDKARPAMPVEIE--GLKGLPMAGD 438 (708)
Q Consensus 366 ~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~-----~~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~~~~~~Gd 438 (708)
+-|.++|..+..|.++.++|.+|.++.+..+.+-. ..|++.+|. .....++++..|.-+.|. +++++ ..||
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLk-r~KddV~EV~~G~ECGi~l~~~~di-k~GD 86 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLK-RYKDDVREVAQGYECGLTIKNFNDI-KEGD 86 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEE-CSSSCCSCCBTTCEEEEECTTCSSC-SSCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhc-ccccccceECCCcEEEEEEcCcCCC-CCCC
Confidence 34566677777899999999999999999987753 356788887 445678889999877765 66665 7899
Q ss_pred eEEEeCC
Q 005218 439 DIIVVDS 445 (708)
Q Consensus 439 ~~~~v~~ 445 (708)
.+-...-
T Consensus 87 ~Ie~ye~ 93 (99)
T 1d1n_A 87 VIEAYVM 93 (99)
T ss_dssp EEEEECC
T ss_pred EEEEEEE
Confidence 8877654
No 451
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=86.20 E-value=0.33 Score=55.30 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=24.4
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
.+++-.++|+|+.|+|||||++.|.+-.
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3577899999999999999999998753
No 452
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.14 E-value=1.1 Score=46.72 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.7
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
...|.|.|+||+|||+|+.++...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999998543
No 453
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.14 E-value=0.33 Score=55.53 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=24.6
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
.+++-.++|+|+.|+|||||++.|.+-.
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3578899999999999999999998753
No 454
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.12 E-value=0.33 Score=47.73 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.2
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
+|+|+|+||+||+|+...|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 455
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.09 E-value=0.37 Score=55.19 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.5
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
.+++-.++|+|+.|+|||||++.|.+-.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4578899999999999999999998753
No 456
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.04 E-value=0.31 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+-.++|+|++|+|||||++.|++.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 346999999999999999999763
No 457
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.03 E-value=0.4 Score=48.87 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=19.5
Q ss_pred EEEEecCCCCchHHHHHhhcC
Q 005218 192 VTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 192 V~IvG~~nvGKSSLln~L~~~ 212 (708)
++|+|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999863
No 458
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=86.01 E-value=0.95 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEEecCCCCchHHHHHhhcC
Q 005218 191 VVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+.+.|+||+|||+|+..|...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999998753
No 459
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.99 E-value=0.37 Score=51.36 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.++-+++|+|+.|+|||||++.|.+.
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999875
No 460
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.99 E-value=0.31 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+..+.|.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998654
No 461
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.87 E-value=0.33 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.5
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++..|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999999865
No 462
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.87 E-value=0.33 Score=45.20 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCchHHHHHhhc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..|+|.|.+|+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 463
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.82 E-value=0.41 Score=47.51 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=22.7
Q ss_pred CCCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 185 ILPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 185 ~~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
...++..|+|+|.+|+||||+...|..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 356778999999999999999999875
No 464
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.80 E-value=1 Score=48.11 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.7
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++++-.+.|.|+|++|||||+..+..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999998874
No 465
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.56 E-value=0.43 Score=47.84 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+..+.+.|+||+|||||+.++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999999753
No 466
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.53 E-value=0.38 Score=49.50 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCCEEEEEecCCCCchHHHHHhh
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALR 210 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~ 210 (708)
+++..|+|.|.+|+||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999987
No 467
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.52 E-value=0.37 Score=54.96 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=24.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
.+++-.++|+|+.|+|||||++.|.+-.
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3577899999999999999999998753
No 468
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.38 E-value=0.42 Score=54.00 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.8
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+.++-.++|+|+.|+|||||++.|.+..
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999998743
No 469
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.34 E-value=1.3 Score=47.02 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.6
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++++-.+.|.|+|++|||||+..+..
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45778899999999999999988864
No 470
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=85.30 E-value=1.8 Score=48.84 Aligned_cols=66 Identities=21% Similarity=0.392 Sum_probs=55.2
Q ss_pred eEEEEEEEecEEeeCCeEEEeeCCeEEEEEEEeeeec-cccccceeccCCeEEEEEcccCCCCCCCEEE
Q 005218 618 KIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKR-EKQDVDTVAKGNECGLVIRDWHDFQVGDIIQ 685 (708)
Q Consensus 618 ~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~-~k~~V~ev~kG~ecgi~~~~~~~~~~gD~ie 685 (708)
.++=++|.+|++++|..+...|.|+..-.+++..+.- .+.+|+++..|+=|+|. +..++..||.|-
T Consensus 331 rla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~GDTl~ 397 (548)
T 3vqt_A 331 RMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIP--NHGTIKIGDTFT 397 (548)
T ss_dssp CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEE--CSSCCCTTCEEE
T ss_pred eEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEec--CCccCccCCEec
Confidence 6889999999999999999999998765555555544 56789999999988764 888999999874
No 471
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.29 E-value=0.42 Score=45.91 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCEEEEEecCCCCchHHHHHhhcC
Q 005218 189 PPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+..+.|.|++|+|||+|+.++...
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998753
No 472
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=85.14 E-value=0.42 Score=52.60 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.7
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+.++-+++|+|+.|+|||||++.|.+.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 346778999999999999999999875
No 473
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=85.13 E-value=1.7 Score=48.56 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHc-ccccccCCCcceeEEEEEeeCCCCcEEEEEEEeeEEcCCCEEEEcc-----ccceEEEEecccCC
Q 005218 341 DDLEVALLLQAEMM-NLKARVDGPAQAYVVEARLDKGRGPLTTAIVKAGTLVCGQHVVVGH-----EWGRIRAIRDMVGK 414 (708)
Q Consensus 341 ~~L~~~I~~~~~~~-~~~~~~~~p~~~~V~e~~~~~~~G~v~~~~V~~G~L~~gd~v~~g~-----~~~kVr~i~~~~~~ 414 (708)
-+|++.+......+ .+.....-...+.|.++|.....|.++.+.|..|.+++|..+.+-. ..|+|.+|+ ...+
T Consensus 385 y~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~-~~k~ 463 (501)
T 1zo1_I 385 YNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLR-RFKD 463 (501)
T ss_dssp SHHHHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEE-ETTE
T ss_pred HHHHHHHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhc-ccCc
Confidence 47777766655432 2222222223345677776666799999999999999999998832 457888988 4677
Q ss_pred cccccCCCCcEEEe--ccCCCCCCCCeEEEeCCH
Q 005218 415 STDKARPAMPVEIE--GLKGLPMAGDDIIVVDSE 446 (708)
Q Consensus 415 ~v~~a~~g~~V~i~--gl~~~~~~Gd~~~~v~~~ 446 (708)
.++++..|+-|.|. +++++ ..||.+..+.-.
T Consensus 464 ~v~e~~~g~ecgi~~~~~~~~-~~gd~~~~~~~~ 496 (501)
T 1zo1_I 464 DVNEVRNGMECGIGVKNYNDV-RTGDVIEVFEII 496 (501)
T ss_dssp EESEEETTCCEEEEBCCCTTC-CTTCEEEECCCT
T ss_pred cccEECCCCEEEEEEcCcCCC-CCCCEEEEEEEE
Confidence 89999999877764 66665 799998877654
No 474
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.12 E-value=0.38 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.1
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
.|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 475
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.12 E-value=0.36 Score=49.31 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=23.5
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++++-.++|+|++|+|||||+..|..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 56788999999999999999999875
No 476
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.84 E-value=0.44 Score=46.98 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=19.2
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 005218 191 VVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 191 ~V~IvG~~nvGKSSLln~L~~ 211 (708)
.|+|.|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 477
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=84.66 E-value=0.33 Score=55.34 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=24.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
.+++-.++|+|+.|+|||||++.|.+-.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3578899999999999999999988653
No 478
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.48 E-value=0.5 Score=54.19 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.5
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
.+++-.++|+|+.|+|||||++.|.+-.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4577899999999999999999997743
No 479
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=84.28 E-value=2.3 Score=42.13 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=24.5
Q ss_pred EEEEEccCCCChhHHHHHHHhhhcCCCEEEEEeCCCCC
Q 005218 265 VLVVAADDGVMPQTLEAIAHANAANVPIVVAINKCDKP 302 (708)
Q Consensus 265 llVvDa~~g~~~q~~~~l~~l~~~~~piIvViNK~Dl~ 302 (708)
++.+|=..=..+...+.+..+...++|+|+.+=..|-.
T Consensus 104 vV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~DF~ 141 (219)
T 3e2i_A 104 VIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFR 141 (219)
T ss_dssp EEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBCTT
T ss_pred EEEEechhcCCHHHHHHHHHHHHCCCEEEEeecccccc
Confidence 45556444333445555655557899999999888853
No 480
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.23 E-value=0.4 Score=54.71 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=24.3
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
.+++-.++|+|+.|+|||||++.|.+-.
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3578899999999999999999997643
No 481
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=84.09 E-value=2.3 Score=41.12 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=18.9
Q ss_pred CCCEEEEEecCCCCchHHHHHhh
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALR 210 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~ 210 (708)
++...++.|+.|+||||.+-.+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a 29 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRI 29 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 45678999999999998876664
No 482
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.05 E-value=0.47 Score=53.59 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=23.6
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
.+++-.++|+|+.|+|||||++.|.+..
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3456689999999999999999998743
No 483
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=83.91 E-value=0.48 Score=43.85 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.2
Q ss_pred CCEEEEEecCCCCchHHHHHhh
Q 005218 189 PPVVTVMGHVDHGKTSLLDALR 210 (708)
Q Consensus 189 ~~~V~IvG~~nvGKSSLln~L~ 210 (708)
+...+|+|+.|+|||||+++|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999985
No 484
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=83.91 E-value=0.95 Score=46.22 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=46.2
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEE-EEEeCCCCC
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDKP 302 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piI-vViNK~Dl~ 302 (708)
+.+.|+|||+.-.... .......+|.+|+|+.+...........+..+...+.+++ +|+|+.|..
T Consensus 192 yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 5799999998543221 1122357999999999877555566666677777778866 899999863
No 485
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=83.86 E-value=0.49 Score=43.99 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.8
Q ss_pred CEEEEEecCCCCchHHHHHhhc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~ 211 (708)
-+|+|.|.+|+||||+...|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 486
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=83.80 E-value=0.91 Score=47.82 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
++++..+.|.|+||+|||+|...+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 334556799999999999999998754
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.76 E-value=0.54 Score=53.93 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcCc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQTS 213 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~~ 213 (708)
+.++-.++|+|+.|+|||||++.|.+..
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 5678899999999999999999997743
No 488
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.71 E-value=0.57 Score=47.55 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+..+.|.|+||+|||+|+.++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999653
No 489
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.66 E-value=0.48 Score=46.64 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.9
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
++++-.++|+|+||+|||||+..+..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999877753
No 490
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.66 E-value=0.48 Score=46.75 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=21.2
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhc
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
.++.-.+.+.|+||+||||++.+|.+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 34445699999999999999988865
No 491
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.64 E-value=0.61 Score=48.16 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=21.4
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+.|..+.+.|+||+|||+|..++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567788899999999999998753
No 492
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.36 E-value=0.62 Score=46.44 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.7
Q ss_pred CCCCEEEEEecCCCCchHHHHHhhc
Q 005218 187 PRPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 187 ~~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..+..+.+.|+||+|||+|+.++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999975
No 493
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.33 E-value=0.54 Score=44.90 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.0
Q ss_pred CEEEEEecCCCCchHHHHHhhcC
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
+.+.|.|++|+|||+|+..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999998753
No 494
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.24 E-value=0.57 Score=44.91 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.8
Q ss_pred CEEEEEecCCCCchHHHHHhhc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+.|+|.|.+|+||||+.+.|..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 495
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=83.23 E-value=1.4 Score=39.37 Aligned_cols=81 Identities=12% Similarity=0.163 Sum_probs=61.2
Q ss_pred ceeEEEEEeeCCCCc---EEEEEEEeeEEcCCCEEEEcc-----ccceEEEEecccCCcccccCCCCcEEEe--ccC-CC
Q 005218 365 QAYVVEARLDKGRGP---LTTAIVKAGTLVCGQHVVVGH-----EWGRIRAIRDMVGKSTDKARPAMPVEIE--GLK-GL 433 (708)
Q Consensus 365 ~~~V~e~~~~~~~G~---v~~~~V~~G~L~~gd~v~~g~-----~~~kVr~i~~~~~~~v~~a~~g~~V~i~--gl~-~~ 433 (708)
.+-|.++|.....|. ++.++|.+|.++.+..+.+-. ..|++.+|. .....++++..|.-+-|. +++ ++
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLk-rfKdDVkEV~~G~ECGi~l~~fniDi 90 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLK-HHKDDISVIKTGMDCGLSLDEEKVEF 90 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEE-SSSSCCSEECTTCEEEEECSCTTSCC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhc-ccccccceecCCCEEEEEEccCCCCC
Confidence 345777777766787 999999999999999887743 346788887 445678899999877664 666 65
Q ss_pred CCCCCeEEEeCCHH
Q 005218 434 PMAGDDIIVVDSEE 447 (708)
Q Consensus 434 ~~~Gd~~~~v~~~~ 447 (708)
..||.+-...-.+
T Consensus 91 -k~GDiIE~ye~~e 103 (120)
T 2crv_A 91 -KPGDQVICYEENK 103 (120)
T ss_dssp -CTTEEEEEECCSC
T ss_pred -CCCCEEEEEEEEE
Confidence 7899888776543
No 496
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.17 E-value=0.47 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=18.6
Q ss_pred CCCEEEEEecCCCCchHHHHHhhc
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~ 211 (708)
+++.|+|.|++|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999865
No 497
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.76 E-value=0.44 Score=48.17 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=22.4
Q ss_pred CCCCCEEEEEecCCCCchHHHHHhhcC
Q 005218 186 LPRPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 186 ~~~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
..++..|+|.|.+|+||||+++.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999998754
No 498
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.69 E-value=0.62 Score=44.96 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.7
Q ss_pred CEEEEEecCCCCchHHHHHhhc
Q 005218 190 PVVTVMGHVDHGKTSLLDALRQ 211 (708)
Q Consensus 190 ~~V~IvG~~nvGKSSLln~L~~ 211 (708)
..+.|.|++|+|||||+..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 499
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=82.53 E-value=1.8 Score=44.79 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=46.9
Q ss_pred eeEEEeeCCCcchhhhhhhcccccccEEEEEEEccCCCChhHHHHHHHhhhcCCCEE-EEEeCCCCC
Q 005218 237 ASITFLDTPGHAAFSAMRKRGAAVTDIVVLVVAADDGVMPQTLEAIAHANAANVPIV-VAINKCDKP 302 (708)
Q Consensus 237 ~~v~liDTpG~~~f~~~~~~~~~~aDivllVvDa~~g~~~q~~~~l~~l~~~~~piI-vViNK~Dl~ 302 (708)
+.+.|+|||+.-..... ......+|.+|+|+.............+..+...+.+++ +|+|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d~-~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTHH-HHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHHH-HHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 56999999986432211 112467999999999877666677777777777777744 788999863
No 500
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.46 E-value=0.68 Score=47.85 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCCchHHHHHhhcC
Q 005218 188 RPPVVTVMGHVDHGKTSLLDALRQT 212 (708)
Q Consensus 188 ~~~~V~IvG~~nvGKSSLln~L~~~ 212 (708)
.+..|.+.|+||+|||+|+.++.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 4567999999999999999999763
Done!