Your job contains 1 sequence.
>005219
MALSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESL
LPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVV
TKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTY
DNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADF
EDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQ
VVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGFG
LTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTL
SIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEIN
NMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAREL
RLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRAMM
EQKADPENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFE
VIPYTDDKASENQHQVAISLLRSAEARANKSGKKVTLVPIKKLKSGRK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005219
(708 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|GSU_3239 - symbol:GSU_3239 "ribonuclease G" spec... 471 2.5e-52 3
UNIPROTKB|Q4KFS6 - symbol:rne "Ribonuclease E" species:22... 497 2.8e-52 3
UNIPROTKB|Q9KQG8 - symbol:VC_2030 "Ribonuclease E" specie... 491 3.3e-52 3
TIGR_CMR|VC_2030 - symbol:VC_2030 "ribonuclease E" specie... 491 3.3e-52 3
TIGR_CMR|CBU_0486 - symbol:CBU_0486 "ribonuclease, Rne/Rn... 486 8.5e-51 2
UNIPROTKB|Q3IHD2 - symbol:rne "RNase E: endoribonuclease ... 496 4.0e-50 2
TIGR_CMR|SO_2785 - symbol:SO_2785 "ribonuclease E" specie... 494 5.7e-50 2
TIGR_CMR|CPS_2289 - symbol:CPS_2289 "ribonuclease E" spec... 487 3.0e-49 3
TIGR_CMR|SO_4094 - symbol:SO_4094 "ribonuclease G" specie... 458 2.3e-47 2
UNIPROTKB|Q4KIA2 - symbol:rng "Ribonuclease G" species:22... 438 4.5e-45 2
UNIPROTKB|P21513 - symbol:rne "RNase E" species:83333 "Es... 465 7.7e-44 2
UNIPROTKB|P0A9J0 - symbol:rng species:83333 "Escherichia ... 424 3.4e-43 2
UNIPROTKB|Q9KUU6 - symbol:VC_0419 "Cytoplasmic axial fila... 418 1.1e-42 2
TIGR_CMR|VC_0419 - symbol:VC_0419 "cytoplasmic axial fila... 418 1.1e-42 2
TIGR_CMR|GSU_0921 - symbol:GSU_0921 "ribonuclease, Rne/Rn... 446 1.4e-41 2
TIGR_CMR|CPS_4556 - symbol:CPS_4556 "ribonuclease G" spec... 401 2.0e-40 2
TIGR_CMR|SPO_1893 - symbol:SPO_1893 "ribonuclease, Rne/Rn... 436 1.5e-39 3
UNIPROTKB|P71905 - symbol:rne "POSSIBLE RIBONUCLEASE E RN... 418 7.8e-39 2
TIGR_CMR|APH_0345 - symbol:APH_0345 "ribonuclease, Rne/Rn... 338 6.7e-29 3
TIGR_CMR|ECH_0470 - symbol:ECH_0470 "ribonuclease, Rne/Rn... 335 7.0e-28 2
TIGR_CMR|NSE_0120 - symbol:NSE_0120 "ribonuclease, Rne/Rn... 296 1.4e-22 2
TIGR_CMR|BA_4677 - symbol:BA_4677 "ribonuclease, Rne/Rng ... 247 2.8e-19 2
TIGR_CMR|CHY_0364 - symbol:CHY_0364 "ribonuclease, Rne/Rn... 203 3.3e-16 2
TIGR_CMR|SPO_A0079 - symbol:SPO_A0079 "ribonuclease, Rne/... 107 1.2e-07 2
>TIGR_CMR|GSU_3239 [details] [associations]
symbol:GSU_3239 "ribonuclease G" species:243231 "Geobacter
sulfurreducens PCA" [GO:0000910 "cytokinesis" evidence=ISS]
[GO:0004540 "ribonuclease activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] InterPro:IPR003029 InterPro:IPR004659
InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150 GO:GO:0003723
GO:GO:0006396 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 TIGRFAMs:TIGR00757
HOGENOM:HOG000258025 KO:K08301 RefSeq:NP_954280.2 GeneID:2688290
KEGG:gsu:GSU3239 PATRIC:22029323 ProtClustDB:CLSK924669
BioCyc:GSUL243231:GH27-3217-MONOMER Uniprot:Q747M6
Length = 500
Score = 471 (170.9 bits), Expect = 2.5e-52, Sum P(3) = 2.5e-52
Identities = 107/308 (34%), Positives = 171/308 (55%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
+Q+G +++VQV KE +GTKG +T++ L R + + + D +GVSR+I ER RLK
Sbjct: 108 LQEGQEILVQVSKEPIGTKGARITSHVSLPGRHLVYMPTVDHVGVSRRIEDEPERERLKE 167
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
I +P G G +RT A G + E+L D+ L W+ ++ + A P
Sbjct: 168 IVGKAKPAGGGFIVRTAAEGKTEEDLVADMNYLTKLWEEVVRRNEKAH----------AP 217
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L+H + T +++D E V ++VVDS + ++ ++ P + +ELYD P+
Sbjct: 218 CLIHADLDVTQKVIRDILTENVSRIVVDSRHEHDKIVQFISTFMPKMKYSMELYDDEEPI 277
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F +E EI+ L ++V L +GG ++IEQTEAL +IDVN G + H + E IL N
Sbjct: 278 FDHFGLEVEISRALGRKVWLKSGGYIIIEQTEALTAIDVNTGRFVGKH--NLEDTILKTN 335
Query: 530 LAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L A K+IA +LRLR M + N+ V+ +++A++ D+S + ++S G
Sbjct: 336 LEAVKEIAYQLRLRNIGGIIIIDFIDMEKEVNREKVFTALEEAMKADKSKTNILKISDLG 395
Query: 590 LMEITRKR 597
L+E+TRKR
Sbjct: 396 LVEMTRKR 403
Score = 59 (25.8 bits), Expect = 2.5e-52, Sum P(3) = 2.5e-52
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAAL 173
++Y G V +++P M AFV+IG + + + + +F EVNG S +
Sbjct: 40 NIYKGRVVRVLPGMQAAFVDIGLEKAAFLYVAD-----VFDAMEEFETFMEVNGEESDS- 93
Query: 174 EEHAVTYDNDSTSHNTEDVAEADSQDDLVQ 203
E V + H E++ + + Q+ LVQ
Sbjct: 94 -ERQVLHP----LHPIEELLQ-EGQEILVQ 117
Score = 41 (19.5 bits), Expect = 2.5e-52, Sum P(3) = 2.5e-52
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 614 RFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEV 661
+ +L V + + L +R L L K I ++ GF + FE+
Sbjct: 450 KVMLTVHPQVADLLYDEERRGLEELEKKFKKRITVRAKPGFHQEQFEI 497
>UNIPROTKB|Q4KFS6 [details] [associations]
symbol:rne "Ribonuclease E" species:220664 "Pseudomonas
protegens Pf-5" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008995 "ribonuclease E activity" evidence=ISS]
InterPro:IPR003029 InterPro:IPR004659 InterPro:IPR019307
Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126 GO:GO:0003723
GO:GO:0006396 EMBL:CP000076 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0008995
eggNOG:COG1530 HOGENOM:HOG000258027 KO:K08300 TIGRFAMs:TIGR00757
RefSeq:YP_258907.2 GeneID:3477557 KEGG:pfl:PFL_1787 PATRIC:19872805
ProtClustDB:CLSK867668 BioCyc:PFLU220664:GIX8-1795-MONOMER
Uniprot:Q4KFS6
Length = 1071
Score = 497 (180.0 bits), Expect = 2.8e-52, Sum P(3) = 2.8e-52
Identities = 111/309 (35%), Positives = 175/309 (56%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+
Sbjct: 92 LSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELRE 151
Query: 350 IAKTL-QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P GL +RT G S EE+Q DL+ LL W I K A+L + +
Sbjct: 152 ALNGLVAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAI----KEASL------DRSA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DY + + ++++DS E ++++ + P +++LY+ +P
Sbjct: 202 PFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF++F IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L
Sbjct: 262 LFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQT 319
Query: 529 NLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLR M N+R V E+V++ +E DR+ V++ +SR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRF 379
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 380 GLLEMSRQR 388
Score = 66 (28.3 bits), Expect = 2.8e-52, Sum P(3) = 2.8e-52
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY-REPF 151
++Y G +T++ P++ AFV+ G+ R + +K RE F
Sbjct: 40 NIYKGRITRIEPSLEAAFVDFGSERHGFLPLKEISREYF 78
Score = 38 (18.4 bits), Expect = 2.8e-52, Sum P(3) = 2.8e-52
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 626 YLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKASENQHQVAISLLRSA 684
+L + KR + + +A I++ FEV DD N +Q + + +A
Sbjct: 447 FLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQRLRDDSPEANTNQSSYEIAAAA 505
>UNIPROTKB|Q9KQG8 [details] [associations]
symbol:VC_2030 "Ribonuclease E" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008995 "ribonuclease E activity" evidence=ISS]
InterPro:IPR003029 InterPro:IPR004659 InterPro:IPR019307
Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006396
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0008995 KO:K08300
OMA:NTKEVHA TIGRFAMs:TIGR00757 PIR:A82127 RefSeq:NP_231664.1
ProteinModelPortal:Q9KQG8 SMR:Q9KQG8 DNASU:2613409 GeneID:2613409
KEGG:vch:VC2030 PATRIC:20083090 ProtClustDB:CLSK874643
Uniprot:Q9KQG8
Length = 1052
Score = 491 (177.9 bits), Expect = 3.3e-52, Sum P(3) = 3.3e-52
Identities = 123/347 (35%), Positives = 187/347 (53%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E +GF P K E+ + P G + P K L +G +VIVQ+ KE G+KG
Sbjct: 63 ERHGFLPLK-EI---AREYFPDGYS-YQGRPNIKDVLN--EGQEVIVQIEKEERGSKGAA 115
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
LT + L + +L+ + R G +SR+I G ERT LK +L+ P+G GL +RT G
Sbjct: 116 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGK 175
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
S EEL+ DL LL W I + A+D P L+H+ + ++DY
Sbjct: 176 SAEELEWDLNVLLKHWSAIKQ-------ASDSN---PAPFLIHQESNVIVRAIRDYLRRD 225
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++DS Y +++ + PD +RV+ Y+ +PLF F IE +I + + V LP
Sbjct: 226 IGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLP 285
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXX 550
+GGS+VI+ TEAL SID+N G G +E A L+ NL AA +IAR+LRLR
Sbjct: 286 SGGSIVIDPTEALTSIDINSARATKG-GDIEETA-LNTNLEAADEIARQLRLRDLGGLVV 343
Query: 551 XXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
M ++R V +++AV DR+ V++ +SR GL+E++R+R
Sbjct: 344 IDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMSRQR 390
Score = 63 (27.2 bits), Expect = 3.3e-52, Sum P(3) = 3.3e-52
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFP 154
++Y G +T++ P++ AFV+ G R + +K + FP
Sbjct: 40 NIYKGRITRIEPSLEAAFVDYGAERHGFLPLKEIAREY-FP 79
Score = 46 (21.3 bits), Expect = 3.3e-52, Sum P(3) = 3.3e-52
Identities = 24/105 (22%), Positives = 45/105 (42%)
Query: 599 MMEQKADPENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGA 658
++E++A +N + + V + +YL + KR + + + + I +
Sbjct: 425 LIEEEALKDNTS---QVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPH 481
Query: 659 FEVIPYTDDKASENQHQVAISLL--RSAEARANKSGKKVTLVPIK 701
FEVI + E + Q +S L + EA GK+V V +K
Sbjct: 482 FEVI-----RVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELK 521
>TIGR_CMR|VC_2030 [details] [associations]
symbol:VC_2030 "ribonuclease E" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008995 "ribonuclease E activity" evidence=ISS]
InterPro:IPR003029 InterPro:IPR004659 InterPro:IPR019307
Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006396
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0008995 KO:K08300
OMA:NTKEVHA TIGRFAMs:TIGR00757 PIR:A82127 RefSeq:NP_231664.1
ProteinModelPortal:Q9KQG8 SMR:Q9KQG8 DNASU:2613409 GeneID:2613409
KEGG:vch:VC2030 PATRIC:20083090 ProtClustDB:CLSK874643
Uniprot:Q9KQG8
Length = 1052
Score = 491 (177.9 bits), Expect = 3.3e-52, Sum P(3) = 3.3e-52
Identities = 123/347 (35%), Positives = 187/347 (53%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E +GF P K E+ + P G + P K L +G +VIVQ+ KE G+KG
Sbjct: 63 ERHGFLPLK-EI---AREYFPDGYS-YQGRPNIKDVLN--EGQEVIVQIEKEERGSKGAA 115
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
LT + L + +L+ + R G +SR+I G ERT LK +L+ P+G GL +RT G
Sbjct: 116 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGK 175
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
S EEL+ DL LL W I + A+D P L+H+ + ++DY
Sbjct: 176 SAEELEWDLNVLLKHWSAIKQ-------ASDSN---PAPFLIHQESNVIVRAIRDYLRRD 225
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++DS Y +++ + PD +RV+ Y+ +PLF F IE +I + + V LP
Sbjct: 226 IGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLP 285
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXX 550
+GGS+VI+ TEAL SID+N G G +E A L+ NL AA +IAR+LRLR
Sbjct: 286 SGGSIVIDPTEALTSIDINSARATKG-GDIEETA-LNTNLEAADEIARQLRLRDLGGLVV 343
Query: 551 XXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
M ++R V +++AV DR+ V++ +SR GL+E++R+R
Sbjct: 344 IDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMSRQR 390
Score = 63 (27.2 bits), Expect = 3.3e-52, Sum P(3) = 3.3e-52
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFP 154
++Y G +T++ P++ AFV+ G R + +K + FP
Sbjct: 40 NIYKGRITRIEPSLEAAFVDYGAERHGFLPLKEIAREY-FP 79
Score = 46 (21.3 bits), Expect = 3.3e-52, Sum P(3) = 3.3e-52
Identities = 24/105 (22%), Positives = 45/105 (42%)
Query: 599 MMEQKADPENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGA 658
++E++A +N + + V + +YL + KR + + + + I +
Sbjct: 425 LIEEEALKDNTS---QVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPH 481
Query: 659 FEVIPYTDDKASENQHQVAISLL--RSAEARANKSGKKVTLVPIK 701
FEVI + E + Q +S L + EA GK+V V +K
Sbjct: 482 FEVI-----RVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELK 521
>TIGR_CMR|CBU_0486 [details] [associations]
symbol:CBU_0486 "ribonuclease, Rne/Rng family"
species:227377 "Coxiella burnetii RSA 493" [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] InterPro:IPR003029 InterPro:IPR004659
InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126
GO:GO:0003723 GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000258027 KO:K08300
TIGRFAMs:TIGR00757 RefSeq:NP_819521.1 ProteinModelPortal:Q83E45
SMR:Q83E45 GeneID:1208370 KEGG:cbu:CBU_0486 PATRIC:17929663
OMA:EDSIIRK ProtClustDB:CLSK914102
BioCyc:CBUR227377:GJ7S-483-MONOMER Uniprot:Q83E45
Length = 720
Score = 486 (176.1 bits), Expect = 8.5e-51, Sum P(2) = 8.5e-51
Identities = 119/348 (34%), Positives = 190/348 (54%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQK-GTKVIVQVVKEGLGTKGP 311
E +GF P K E+ + +G DS +V K G +++VQV KE GTKG
Sbjct: 63 ERHGFLPLK-EISREYFLQDIEGDFDSIDIN------RVLKLGQELVVQVDKEERGTKGA 115
Query: 312 TLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAG 369
LT + L F +L+ + R G +SR+I G ER +L+ L PEG GL +RT G
Sbjct: 116 ALTTFISLAGSFLVLMPNNPRAGGISRRIEGNERDQLRETINQLSLPEGMGLIVRTAGLG 175
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
EEL+ DL+ LL W E K AA+A G P L+H+ + ++DY +
Sbjct: 176 RPKEELEWDLKILLRYW----EAVKQAAVAKP----G--PYLIHQESDVIIRAIRDYLRQ 225
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
V+++++D + Y+ + P +R++LY + +PLF +F IE++I N + + L
Sbjct: 226 DVEEILIDDEVAFENARHYINQVRPQFVERLKLYREHLPLFSRFQIEQQIENAHQREIRL 285
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXX 549
P+GGSL+I+ +EAL++ID+N G+S E+ L NL AA++IAR+LR+R
Sbjct: 286 PSGGSLIIDHSEALIAIDINSARAT--RGASIEETALSTNLEAAEEIARQLRIRDIGGLI 343
Query: 550 XXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
M N+R V ++ A+ +DR+ +++ +SR GL+E++R+R
Sbjct: 344 VIDFIDMTPLRNQREVENCLRNALSQDRARIQIGRISRFGLLEMSRQR 391
Score = 80 (33.2 bits), Expect = 8.5e-51, Sum P(2) = 8.5e-51
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY-REPFI 152
++Y G++T + P++G FVN G+ R + +K RE F+
Sbjct: 40 NIYKGIITSIEPSLGAVFVNYGSERHGFLPLKEISREYFL 79
>UNIPROTKB|Q3IHD2 [details] [associations]
symbol:rne "RNase E: endoribonuclease for rRNA processing
and mRNA degradation; member of the degradosome; involved in the
production of deoxyribonucleotides via the formation of NDPs"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR004659 InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150
PROSITE:PS50126 GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0004540 InterPro:IPR022967
SMART:SM00316 EMBL:CR954246 GenomeReviews:CR954246_GR
eggNOG:COG1530 HOGENOM:HOG000258027 KO:K08300 TIGRFAMs:TIGR00757
RefSeq:YP_340331.1 ProteinModelPortal:Q3IHD2 SMR:Q3IHD2
STRING:Q3IHD2 GeneID:3710611 KEGG:pha:PSHAa1816 PATRIC:32297207
OMA:LLNHWEA BioCyc:PHAL326442:GJIU-1852-MONOMER Uniprot:Q3IHD2
Length = 1071
Score = 496 (179.7 bits), Expect = 4.0e-50, Sum P(2) = 4.0e-50
Identities = 115/309 (37%), Positives = 172/309 (55%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I +AAD
Sbjct: 154 SLSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAI-------GVAADSA---KA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G G +E A L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKATKG-GDIEETA-LNT 321
Query: 529 NLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLR M ++R V +K AV DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAVRPDRARVQIGKISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
Score = 63 (27.2 bits), Expect = 4.0e-50, Sum P(2) = 4.0e-50
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFP 154
++Y G +T++ P++ AFV G R + +K + FP
Sbjct: 40 NIYKGKITRIEPSLEAAFVEYGADRHGFLPLKEIARTY-FP 79
>TIGR_CMR|SO_2785 [details] [associations]
symbol:SO_2785 "ribonuclease E" species:211586 "Shewanella
oneidensis MR-1" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008995 "ribonuclease E activity" evidence=ISS]
InterPro:IPR003029 InterPro:IPR004659 InterPro:IPR019307
Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126 GO:GO:0003723
GO:GO:0006396 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000258027 KO:K08300
TIGRFAMs:TIGR00757 RefSeq:NP_718364.1 ProteinModelPortal:Q8EDG6
SMR:Q8EDG6 GeneID:1170485 KEGG:son:SO_2785 PATRIC:23525205
OMA:KQHIALV ProtClustDB:CLSK906859 Uniprot:Q8EDG6
Length = 1088
Score = 494 (179.0 bits), Expect = 5.7e-50, Sum P(2) = 5.7e-50
Identities = 126/347 (36%), Positives = 187/347 (53%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E +GF P K E+ + P+G + P K V +G +VIVQ+ KE G KG
Sbjct: 63 ERHGFLPLK-EI---AREYFPKGYS-FQGRPNIKE--VVSEGQEVIVQIDKEERGNKGAA 115
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
LT + L + +L+ + R G +SR+I G ERT LK L+ P G GL +RT G
Sbjct: 116 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPAGMGLIVRTAGVGK 175
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
EL+ DL+ L W I E A++ +GA P L+H+ + ++DY
Sbjct: 176 ESTELKWDLKVLQHHWAAITEAAQT---------KGA-PFLIHQESNVIVRAIRDYLRRD 225
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
V ++++D PR Y E ++ + PD +RV+LY+ +PLF + IE +I + + V LP
Sbjct: 226 VGEILIDHPRIYEEAKQHIALVRPDFVERVKLYEAEVPLFTHYQIESQIESAFQREVRLP 285
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXX 550
+GGS+VI+ TEAL SID+N G G +E A L+ NL AA +IAR+LRLR
Sbjct: 286 SGGSIVIDPTEALTSIDINSARATKG-GDIEETA-LNTNLEAADEIARQLRLRDLGGLVV 343
Query: 551 XXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
M ++R V ++ AV DR+ V++ +SR GLME++R+R
Sbjct: 344 IDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRFGLMEMSRQR 390
Score = 64 (27.6 bits), Expect = 5.7e-50, Sum P(2) = 5.7e-50
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPP---FRCRTKKQEV 165
++Y G +T++ P++ AFV+ G R + +K + FP F+ R +EV
Sbjct: 40 NIYKGKITRVEPSLEAAFVDYGAERHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 93
>TIGR_CMR|CPS_2289 [details] [associations]
symbol:CPS_2289 "ribonuclease E" species:167879 "Colwellia
psychrerythraea 34H" [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] [GO:0008995
"ribonuclease E activity" evidence=ISS] InterPro:IPR003029
InterPro:IPR004659 InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150
PROSITE:PS50126 GO:GO:0003723 GO:GO:0006396 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0004540 InterPro:IPR022967 SMART:SM00316
eggNOG:COG1530 HOGENOM:HOG000258027 KO:K08300 TIGRFAMs:TIGR00757
RefSeq:YP_269009.1 ProteinModelPortal:Q482K8 SMR:Q482K8
STRING:Q482K8 GeneID:3522581 KEGG:cps:CPS_2289 PATRIC:21467677
OMA:TIVEASY BioCyc:CPSY167879:GI48-2354-MONOMER Uniprot:Q482K8
Length = 1004
Score = 487 (176.5 bits), Expect = 3.0e-49, Sum P(3) = 3.0e-49
Identities = 116/347 (33%), Positives = 188/347 (54%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
+ +GF P K E+ + P+G + P K L +G +VIVQ+ KE G KG
Sbjct: 63 DRHGFLPMK-EI---AREYFPKGYT-FQGRPNIKEVLH--EGQEVIVQIDKEERGQKGAA 115
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV-IAKTLQPEGFGLTIRTVAAGH 370
LT + L + +L+ + R G +SR+I G ERT LK ++K P+G GL +RT G
Sbjct: 116 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKASLSKLDLPKGMGLIVRTAGVGK 175
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
EEL+ DL LL W+ I +D G P L+H+ L ++DY
Sbjct: 176 DYEELKWDLSVLLHHWQAI----------SDAGKSRPAPFLIHQETNLILRAIRDYLRRD 225
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++D P+T+ V +++ + PD ++++LY +PLF + IE +I + V LP
Sbjct: 226 IGEVLIDRPKTFESVKKHIEVVRPDFLNKIKLYTSDVPLFTHYQIETQIETAFQREVRLP 285
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXX 550
+GGS+VI+ TEA+ SID+N GS E+ + NL AA++IAR+LRLR
Sbjct: 286 SGGSIVIDPTEAMTSIDINSARAT--KGSDIEETAFNTNLEAAEEIARQLRLRDLGGLVV 343
Query: 551 XXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
M ++R V ++ +V +DR+ +++ ++SR GL+E++R+R
Sbjct: 344 IDFIDMTPVRHQREVENRMRDSVHQDRARIQLGKISRFGLLEMSRQR 390
Score = 58 (25.5 bits), Expect = 3.0e-49, Sum P(3) = 3.0e-49
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPP---FRCRTKKQEV 165
++Y +T++ P++ AFV+ G R + +K + FP F+ R +EV
Sbjct: 40 NIYKAKITRIEPSLEAAFVDYGADRHGFLPMKEIAREY-FPKGYTFQGRPNIKEV 93
Score = 45 (20.9 bits), Expect = 3.0e-49, Sum P(3) = 3.0e-49
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 569 VKKAVERDRSMV----KVSELSRHGLMEITRKRAMMEQKADPEN 608
VKKA +D+ + K + LS H +T+ + K P N
Sbjct: 928 VKKAAPKDKKLARQVKKANRLSGHAKAPMTKTETITTIKDIPTN 971
>TIGR_CMR|SO_4094 [details] [associations]
symbol:SO_4094 "ribonuclease G" species:211586 "Shewanella
oneidensis MR-1" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008996 "ribonuclease G activity" evidence=ISS]
InterPro:IPR003029 InterPro:IPR004659 InterPro:IPR019307
Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126 GO:GO:0003723
GO:GO:0006396 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 TIGRFAMs:TIGR00757
HOGENOM:HOG000258025 KO:K08301 OMA:HQRQVLR ProtClustDB:PRK11712
RefSeq:NP_719624.2 ProteinModelPortal:Q8EA15 GeneID:1171708
KEGG:son:SO_4094 PATRIC:23527832 Uniprot:Q8EA15
Length = 502
Score = 458 (166.3 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 109/308 (35%), Positives = 168/308 (54%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKV 349
V++G ++VQVVK+ LGTKG LT L SR+ + + IGVS++I E R+RLK
Sbjct: 111 VRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHIGVSQRIEQEEERSRLKK 170
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
I E G IRT A G +EL +D L W + E + +A
Sbjct: 171 ITLPFVDEDGGFIIRTAAEGVGEDELAQDAAFLRRVWSKVSERRQRRGVA---------- 220
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL++ + + IV+D+ ++ ++ VDS RT+ E+ ++ Q+ P++ D++E Y P+
Sbjct: 221 -LLYQDLALPVRIVRDFVGTELDRIQVDSRRTFAELQAFAQEFMPEIADKIEHYSGPAPI 279
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD +++E EI L ++V L +GG L+I+QTEA+ ++D+N G GH + E+ I + N
Sbjct: 280 FDLYDVENEIQRALGRKVELKSGGYLIIDQTEAMTTVDINTG-AFVGH-RNLEETIFNTN 337
Query: 530 LAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L A + IAR+LRLR M D +K V + A+ +DR VS S G
Sbjct: 338 LEATQAIARQLRLRNLGGIIIIDFIDMLSDEHKTRVLNSLNSALAKDRVKTNVSAFSGLG 397
Query: 590 LMEITRKR 597
L+E+TRKR
Sbjct: 398 LVEMTRKR 405
Score = 57 (25.1 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
++Y G +++++P M AFV+IG + + +
Sbjct: 54 NIYKGKISRVLPGMQAAFVDIGLDKAAFL 82
>UNIPROTKB|Q4KIA2 [details] [associations]
symbol:rng "Ribonuclease G" species:220664 "Pseudomonas
protegens Pf-5" [GO:0003723 "RNA binding" evidence=ISS] [GO:0006396
"RNA processing" evidence=ISS] [GO:0008996 "ribonuclease G
activity" evidence=ISS] InterPro:IPR003029 InterPro:IPR004659
InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126
GO:GO:0003723 GO:GO:0006396 EMBL:CP000076 GenomeReviews:CP000076_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG1530 TIGRFAMs:TIGR00757
HOGENOM:HOG000258025 KO:K08301 OMA:HQRQVLR GO:GO:0008996
RefSeq:YP_258031.1 ProteinModelPortal:Q4KIA2 STRING:Q4KIA2
GeneID:3475487 KEGG:pfl:PFL_0900 PATRIC:19870987
ProtClustDB:CLSK868683 BioCyc:PFLU220664:GIX8-903-MONOMER
Uniprot:Q4KIA2
Length = 485
Score = 438 (159.2 bits), Expect = 4.5e-45, Sum P(2) = 4.5e-45
Identities = 103/313 (32%), Positives = 170/313 (54%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLK- 348
V +G ++VQV K+ +G+KG LT + SR+ + + +G+S KI ER RLK
Sbjct: 88 VHEGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVGISLKIEDEAERERLKQ 147
Query: 349 VIAKTLQPEGF----GLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGV 404
V++ + EG G +RT A G +E+ D+ L W I K+
Sbjct: 148 VVSDCVAQEGIKEAGGFILRTAAEGAGADEIMMDIRYLRRLWDQIGAQIKTI-------- 199
Query: 405 EGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD 464
GA P +++ +G L ++D + K++K+ +DS T+ + T ++ ++ P++ DR+E Y
Sbjct: 200 -GA-PNVIYEDLGLALRTLRDLVSPKIEKIRIDSRETFQKTTVFVAELMPEIADRLEHYP 257
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
P+FD + +E+EI L ++VPL +GG LV++ EA+ +IDVN G GH + E+
Sbjct: 258 GERPIFDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMTTIDVNTG-AFVGH-RNLEET 315
Query: 525 ILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
I NL AA IAR+LRLR M D+ ++R V ++K +ERD + +
Sbjct: 316 IFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDEEHQRQVLRTLEKQLERDHAKTNIIG 375
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 376 ITELGLVQMTRKR 388
Score = 59 (25.8 bits), Expect = 4.5e-45, Sum P(2) = 4.5e-45
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
++Y G V +++P M AFV+IG R + +
Sbjct: 40 NIYKGKVVRVLPGMQAAFVDIGLDRAAFI 68
>UNIPROTKB|P21513 [details] [associations]
symbol:rne "RNase E" species:83333 "Escherichia coli K-12"
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000967 "rRNA 5'-end
processing" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006401 "RNA catabolic process" evidence=IDA]
InterPro:IPR003029 InterPro:IPR004659 InterPro:IPR019307
Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0006401 GO:GO:0006396 GO:GO:0090305
GO:GO:0004519 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0004540 InterPro:IPR022967 SMART:SM00316 PDB:2FYM PDB:3H8A
PDBsum:2FYM PDBsum:3H8A EMBL:X67470 PDB:3H1C PDBsum:3H1C
EMBL:M62747 EMBL:X54309 EMBL:L23942 PIR:A64852 RefSeq:NP_415602.1
RefSeq:YP_489352.1 PDB:1SLJ PDB:1SMX PDB:1SN8 PDB:2BX2 PDB:2C0B
PDB:2C4R PDB:2VMK PDB:2VRT PDBsum:1SLJ PDBsum:1SMX PDBsum:1SN8
PDBsum:2BX2 PDBsum:2C0B PDBsum:2C4R PDBsum:2VMK PDBsum:2VRT
DisProt:DP00207 ProteinModelPortal:P21513 SMR:P21513 DIP:DIP-10727N
IntAct:P21513 MINT:MINT-1220086 PaxDb:P21513 PRIDE:P21513
EnsemblBacteria:EBESCT00000002214 EnsemblBacteria:EBESCT00000002215
EnsemblBacteria:EBESCT00000002216 EnsemblBacteria:EBESCT00000017128
GeneID:12932029 GeneID:945641 KEGG:ecj:Y75_p1054 KEGG:eco:b1084
PATRIC:32117409 EchoBASE:EB0852 EcoGene:EG10859 eggNOG:COG1530
HOGENOM:HOG000258027 KO:K08300 OMA:NTKEVHA ProtClustDB:PRK10811
BioCyc:EcoCyc:EG10859-MONOMER BioCyc:ECOL316407:JW1071-MONOMER
BioCyc:MetaCyc:EG10859-MONOMER EvolutionaryTrace:P21513
Genevestigator:P21513 InterPro:IPR021968 Pfam:PF12111
TIGRFAMs:TIGR00757 Uniprot:P21513
Length = 1061
Score = 465 (168.7 bits), Expect = 7.7e-44, Sum P(2) = 7.7e-44
Identities = 118/349 (33%), Positives = 187/349 (53%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKH-TPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
E +GF P K E+ + ++ S H P K L+ +G +VIVQ+ KE G KG
Sbjct: 63 ERHGFLPLK-EIAREYFPANY-----SAHGRPNIKDVLR--EGQEVIVQIDKEERGNKGA 114
Query: 312 TLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAG 369
LT + L + +L+ + R G +SR+I G +RT LK +L+ PEG GL +RT G
Sbjct: 115 ALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVG 174
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
S E LQ DL L W+ I + A+S P L+H+ + +DY +
Sbjct: 175 KSAEALQWDLSFRLKHWEAIKKAAESRP----------APFLIHQESNVIVRAFRDYLRQ 224
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIA-PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVP 488
+ ++++D+P+ ++ + PD +++LY IPLF + IE +I + + V
Sbjct: 225 DIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVR 284
Query: 489 LPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXX 548
LP+GGS+VI+ TEAL +ID+N G G +E A + NL AA +IAR+LRLR
Sbjct: 285 LPSGGSIVIDSTEALTAIDINSARATRG-GDIEETAF-NTNLEAADEIARQLRLRDLGGL 342
Query: 549 XXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
M ++R V +++AV +DR+ +++S +SR GL+E++R+R
Sbjct: 343 IVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 391
Score = 64 (27.6 bits), Expect = 7.7e-44, Sum P(2) = 7.7e-44
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFP 154
++Y G +T++ P++ AFV+ G R + +K + FP
Sbjct: 40 NIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREY-FP 79
>UNIPROTKB|P0A9J0 [details] [associations]
symbol:rng species:83333 "Escherichia coli K-12"
[GO:0008996 "ribonuclease G activity" evidence=IDA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR003029
InterPro:IPR004659 InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150
PROSITE:PS50126 GO:GO:0005737 GO:GO:0051301 GO:GO:0005856
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0007049
GO:GO:0004519 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006364 InterPro:IPR022967 SMART:SM00316 EMBL:X57166
eggNOG:COG1530 TIGRFAMs:TIGR00757 PIR:A65117 RefSeq:NP_417713.2
RefSeq:YP_491430.1 ProteinModelPortal:P0A9J0 SMR:P0A9J0
DIP:DIP-48098N IntAct:P0A9J0 MINT:MINT-1221298 PRIDE:P0A9J0
EnsemblBacteria:EBESCT00000003965 EnsemblBacteria:EBESCT00000015299
GeneID:12933077 GeneID:947744 KEGG:ecj:Y75_p3166 KEGG:eco:b3247
PATRIC:32121920 EchoBASE:EB1276 EcoGene:EG11299
HOGENOM:HOG000258025 KO:K08301 OMA:HQRQVLR ProtClustDB:PRK11712
BioCyc:EcoCyc:EG11299-MONOMER BioCyc:ECOL316407:JW3216-MONOMER
BioCyc:MetaCyc:EG11299-MONOMER Genevestigator:P0A9J0 GO:GO:0008996
Uniprot:P0A9J0
Length = 489
Score = 424 (154.3 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
Identities = 109/331 (32%), Positives = 177/331 (53%)
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
HT G + + T + + L V++G ++VQVVK+ LGTKG LT L SR+ + +
Sbjct: 76 HTECVAGEEQKQFTVRDISEL-VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134
Query: 329 SCDRIGVSRKITGV-ERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+GVS++I ER RLK V+A+ +G G IRT A G EL D L W
Sbjct: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ME K + G + A+ Q +++D+ + ++ ++ VDS TY +
Sbjct: 194 TKVMERKKRPQTRYQ--LYGEL------ALAQR--VLRDFADAELDRIRVDSRLTYEALL 243
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+ + P++ ++E Y R P+FD F++E EI L ++V L +GG L+I+QTEA+ ++
Sbjct: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVY 566
D+N G GH + + I + N+ A + IAR+LRLR M ++ ++R V
Sbjct: 304 DINTG-AFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+++A+ +DR V+ S GL+E+TRKR
Sbjct: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKR 392
Score = 57 (25.1 bits), Expect = 3.4e-43, Sum P(2) = 3.4e-43
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
++Y G V++++P M AFV+IG + + +
Sbjct: 40 NIYKGRVSRVLPGMQAAFVDIGLDKAAFL 68
>UNIPROTKB|Q9KUU6 [details] [associations]
symbol:VC_0419 "Cytoplasmic axial filament protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] InterPro:IPR003029
InterPro:IPR004659 InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150
PROSITE:PS50126 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006396 GO:GO:0000910 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0004540 InterPro:IPR022967
SMART:SM00316 TIGRFAMs:TIGR00757 KO:K08301 OMA:HQRQVLR
ProtClustDB:PRK11712 PIR:D82325 RefSeq:NP_230073.1
ProteinModelPortal:Q9KUU6 DNASU:2615680 GeneID:2615680
KEGG:vch:VC0419 PATRIC:20079919 Uniprot:Q9KUU6
Length = 489
Score = 418 (152.2 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 99/308 (32%), Positives = 165/308 (53%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKV 349
V++G ++VQVVK+ LGTKG LT L SR+ + + +GVS++I ER RLK
Sbjct: 97 VRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK 156
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
I E G IRT A G + +EL +D L W ++E +
Sbjct: 157 IVSHYCDEHGGFIIRTAAEGANEKELTQDAAFLKRLWSKVIERRSKYKNRS--------- 207
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
+L+ +G I++D+ ++ K+++DS + + + + + P+L ++ELY P+
Sbjct: 208 -MLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPI 266
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD ++ E EI L ++V L +GG L+I+QTEA+ +ID+N G G + E+ I + N
Sbjct: 267 FDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTG-AFVGR-RNLEETIFNTN 324
Query: 530 LAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
+ A + IAR+LRLR MA D +++ V ++ A+ +DR ++ ++ G
Sbjct: 325 IEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNINGFTQLG 384
Query: 590 LMEITRKR 597
L+E+TRKR
Sbjct: 385 LVEMTRKR 392
Score = 59 (25.8 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRC--RTKKQE 164
++Y G V++++P M AFV+IG + + + H + I P C ++KQ+
Sbjct: 40 NIYKGKVSRVLPGMQAAFVDIGLDKAAFL---HASD--IVPHTECVAESEKQQ 87
>TIGR_CMR|VC_0419 [details] [associations]
symbol:VC_0419 "cytoplasmic axial filament protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] InterPro:IPR003029 InterPro:IPR004659
InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0000910 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0004540 InterPro:IPR022967 SMART:SM00316 TIGRFAMs:TIGR00757
KO:K08301 OMA:HQRQVLR ProtClustDB:PRK11712 PIR:D82325
RefSeq:NP_230073.1 ProteinModelPortal:Q9KUU6 DNASU:2615680
GeneID:2615680 KEGG:vch:VC0419 PATRIC:20079919 Uniprot:Q9KUU6
Length = 489
Score = 418 (152.2 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 99/308 (32%), Positives = 165/308 (53%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKV 349
V++G ++VQVVK+ LGTKG LT L SR+ + + +GVS++I ER RLK
Sbjct: 97 VRQGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEAERERLKK 156
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
I E G IRT A G + +EL +D L W ++E +
Sbjct: 157 IVSHYCDEHGGFIIRTAAEGANEKELTQDAAFLKRLWSKVIERRSKYKNRS--------- 207
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
+L+ +G I++D+ ++ K+++DS + + + + + P+L ++ELY P+
Sbjct: 208 -MLYGELGLAQRILRDFVGTELTKILIDSRQEFENLKEFTSEYVPELTAKLELYHGDKPI 266
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD ++ E EI L ++V L +GG L+I+QTEA+ +ID+N G G + E+ I + N
Sbjct: 267 FDMYDTENEIQRSLERKVELKSGGYLIIDQTEAMTTIDINTG-AFVGR-RNLEETIFNTN 324
Query: 530 LAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
+ A + IAR+LRLR MA D +++ V ++ A+ +DR ++ ++ G
Sbjct: 325 IEATQAIARQLRLRNLGGIIIIDFIDMASDEHRKRVLTSLETALMKDRVKTNINGFTQLG 384
Query: 590 LMEITRKR 597
L+E+TRKR
Sbjct: 385 LVEMTRKR 392
Score = 59 (25.8 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRC--RTKKQE 164
++Y G V++++P M AFV+IG + + + H + I P C ++KQ+
Sbjct: 40 NIYKGKVSRVLPGMQAAFVDIGLDKAAFL---HASD--IVPHTECVAESEKQQ 87
>TIGR_CMR|GSU_0921 [details] [associations]
symbol:GSU_0921 "ribonuclease, Rne/Rng family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] InterPro:IPR003029 InterPro:IPR004659
InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126
GO:GO:0003723 GO:GO:0006396 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 KO:K08300 TIGRFAMs:TIGR00757
HOGENOM:HOG000258026 RefSeq:NP_951975.1 ProteinModelPortal:Q74EP1
GeneID:2685443 KEGG:gsu:GSU0921 PATRIC:22024617 OMA:NVENEIH
ProtClustDB:CLSK828093 BioCyc:GSUL243231:GH27-898-MONOMER
Uniprot:Q74EP1
Length = 808
Score = 446 (162.1 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 110/323 (34%), Positives = 177/323 (54%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
+++G ++IVQV K KG LT Y R+ +L+ D G+SRK+ +R +LK
Sbjct: 100 IRRGQELIVQVEKGERDMKGAALTTYMSFPGRYMVLMPGSDSAGISRKVESESDRKKLKE 159
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ PEG+G +RT A G + EL KDL+ L+ + I++ A AA +G
Sbjct: 160 KVAELEIPEGYGYIVRTEALGKTKTELAKDLQYLVKLHQGIVDKA-----AAAKG----- 209
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LLHR + + ++DYF ++ +++VDS Y + + + P V+L+ ++ P
Sbjct: 210 PTLLHRELDVVIRTIRDYFTAEIDEVLVDSKDVYKQAREFFKQTMPKFEKLVKLHTEKRP 269
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F ++ IEE+I+ + K+VPL +GG L+IE TEALVSIDVN G G E
Sbjct: 270 IFSRYQIEEQIDLIYEKKVPLKSGGYLIIEPTEALVSIDVNSGKTTGEKGV--EDTAYKT 327
Query: 529 NLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++ AR+LR+R M D + V + +K A++ D++ V V +S+
Sbjct: 328 NLEAAEEAARQLRMRDLGGLIVLDFIDMRDKKHITAVEKTLKAALKGDKARVTVGRISQF 387
Query: 589 GLMEITRKRAM--MEQKADPENP 609
G++E++R+R +EQ + E P
Sbjct: 388 GMLEMSRQRIRQTLEQGSTLECP 410
Score = 168 (64.2 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 55/179 (30%), Positives = 91/179 (50%)
Query: 225 NVNGSIIDDGEP--EADFEDF-LEGDHHLD-GESN-GFFPSKSEVPDDSHTSHPQGTKDS 279
NV ++ EP +A F D L+ L GE + F+ +S++P++S + P+ +
Sbjct: 41 NVYKGVVVRVEPGLQAAFVDIGLKRLGFLQMGEIHPSFWQWRSDIPEESRSRRPRIQE-- 98
Query: 280 KHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI 339
+++G ++IVQV K KG LT Y R+ +L+ D G+SRK+
Sbjct: 99 ----------VIRRGQELIVQVEKGERDMKGAALTTYMSFPGRYMVLMPGSDSAGISRKV 148
Query: 340 TGV-ERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+R +LK L+ PEG+G +RT A G + EL KDL+ L+ + I++ A +A
Sbjct: 149 ESESDRKKLKEKVAELEIPEGYGYIVRTEALGKTKTELAKDLQYLVKLHQGIVDKAAAA 207
Score = 60 (26.2 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPF 151
+VY GVV ++ P + AFV+IG R + + F
Sbjct: 41 NVYKGVVVRVEPGLQAAFVDIGLKRLGFLQMGEIHPSF 78
>TIGR_CMR|CPS_4556 [details] [associations]
symbol:CPS_4556 "ribonuclease G" species:167879 "Colwellia
psychrerythraea 34H" [GO:0000910 "cytokinesis" evidence=ISS]
[GO:0006396 "RNA processing" evidence=ISS] [GO:0008996
"ribonuclease G activity" evidence=ISS] InterPro:IPR003029
InterPro:IPR004659 InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150
PROSITE:PS50126 GO:GO:0003723 GO:GO:0006396 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0004540 InterPro:IPR022967 SMART:SM00316
eggNOG:COG1530 TIGRFAMs:TIGR00757 HOGENOM:HOG000258025 KO:K08301
OMA:HQRQVLR ProtClustDB:PRK11712 RefSeq:YP_271204.1
ProteinModelPortal:Q47VG8 STRING:Q47VG8 GeneID:3522587
KEGG:cps:CPS_4556 PATRIC:21471937
BioCyc:CPSY167879:GI48-4565-MONOMER Uniprot:Q47VG8
Length = 485
Score = 401 (146.2 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 97/308 (31%), Positives = 163/308 (52%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
V +G ++VQVVK+ LG+KG LT + SR+ +L+ + G+S +I ER RLK
Sbjct: 93 VHEGQHIMVQVVKDPLGSKGARLTTDITIASRYLVLMPNSQHAGISLRIENPNERDRLKD 152
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
I E G +RT G +LQ D E L W + LA + + +P
Sbjct: 153 IVTPYCDEQQGFIVRTAGEGADELDLQHDAEFLRRVWHKV--------LARKQRKQTNLP 204
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ + + +++D+ ++++ +DS T+ E+T + ++ P+L +E Y +P+
Sbjct: 205 --LYQDLSLSFRVLRDFVGINLERIRIDSNLTFQELTVFTEEFVPELTPLLEYYPGELPI 262
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F++E EI L +++ L +GG L+I+QTEA+ +ID+N G GH + + I N
Sbjct: 263 FDLFSVEREIQRALHRKIELKSGGYLIIDQTEAMTTIDINTG-AFVGHRNLAD-TIFSTN 320
Query: 530 LAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
+ A + IAR+LRLR M +D +KR V + A+ +D+ + S G
Sbjct: 321 IEATQVIARQLRLRNLGGIIIVDFIDMHNDDHKRRVLHSLDMAMSKDKVKYSLHGFSALG 380
Query: 590 LMEITRKR 597
L+E+TR+R
Sbjct: 381 LVEMTRQR 388
Score = 56 (24.8 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
++YLG V +++P M AFV+I + + +
Sbjct: 40 NIYLGKVIRVLPGMQAAFVDINLDKAAFL 68
>TIGR_CMR|SPO_1893 [details] [associations]
symbol:SPO_1893 "ribonuclease, Rne/Rng family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
evidence=ISS] [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0006396 "RNA processing" evidence=ISS] InterPro:IPR003029
InterPro:IPR004659 InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 KO:K08300 TIGRFAMs:TIGR00757
HOGENOM:HOG000258026 RefSeq:YP_167130.1 ProteinModelPortal:Q5LS75
SMR:Q5LS75 GeneID:3192750 KEGG:sil:SPO1893 PATRIC:23377119
OMA:MGIILRT ProtClustDB:CLSK933668 Uniprot:Q5LS75
Length = 993
Score = 436 (158.5 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 144/481 (29%), Positives = 224/481 (46%)
Query: 164 EVNGSASAALEEHAVTYDND--STSHNTEDVAEA------DSQDDLVQXXXXXXXXXXXX 215
E++G + L+E D D S E VAE D D+ V
Sbjct: 145 EISGMETIDLDEGDDRDDIDLIEGSSPMERVAETPVEEPEDGADETVDQTADQAADEAAD 204
Query: 216 XXXVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQG 275
++ + + D+ E AD D + D D + + DDS S +
Sbjct: 205 AAEDTDTTETDGETAQDNTEDRADEADDEDEDDGEDAPRPRRGKADAASKDDSIESIAEE 264
Query: 276 TKDSKHTPGEKTWLQ---VQKGTKV----IVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
P K + +Q+ KV +VQVVKE G KG LT Y L R+ +L+
Sbjct: 265 DDAEDLRPARKPRARKYKIQEVVKVRQVMLVQVVKEERGNKGAALTTYLSLAGRYCVLMP 324
Query: 329 SCDRIG-VSRKITG-VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLST 385
+ R G +SRKIT V+R +LK IA + P+G GL +RT A + E+++D E L
Sbjct: 325 NTARGGGISRKITNAVDRKKLKEIAAEMDVPQGAGLIVRTAGAKRTKAEIKRDYEYLQRM 384
Query: 386 WKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEV 445
W+ I E + A EG L+ R+ ++D +N + +++V+ Y
Sbjct: 385 WEQIRELTLKSIAPAKIYEEGD---LIKRS-------IRDLYNRDIDEVLVEGEGGYRIA 434
Query: 446 TSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVS 505
+++ I P V+ Y+ ++PLF +F +E +N+M + V L +GG +VI TEALV+
Sbjct: 435 KDFMKMIMPSHAKNVQRYEDQLPLFARFQVESYLNSMFNPTVQLKSGGYIVIGVTEALVA 494
Query: 506 IDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLV 565
IDVN G GS +E A L NL AA+++AR+LRLR M + N V
Sbjct: 495 IDVNSGRAT-KEGSIEETA-LKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAV 552
Query: 566 YEEVKKAVERDRSMVKVSELSRHGLMEITRKR---AMMEQKADPENPKSWPRFILRVDHH 622
+ +K ++ DR+ ++V +S GLME++R+R M+E P P ++R D +
Sbjct: 553 EKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQP-CPSCHGTGLIRSDDN 611
Query: 623 M 623
M
Sbjct: 612 M 612
Score = 57 (25.1 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSR 138
++YL VT++ P++ AFV+ G +R
Sbjct: 41 NIYLAKVTRVEPSLQAAFVDYGGNR 65
Score = 39 (18.8 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 157 RCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDL 201
R R+K + + +S +E V+ + + + T D+ E D +DD+
Sbjct: 122 RSRSKAESLR--SSDPVETMDVS-ETEISGMETIDLDEGDDRDDI 163
>UNIPROTKB|P71905 [details] [associations]
symbol:rne "POSSIBLE RIBONUCLEASE E RNE" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR003029 InterPro:IPR004659 InterPro:IPR019307
Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126 GO:GO:0005829
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 GenomeReviews:AL123456_GR
GO:GO:0003723 GO:GO:0006396 EMBL:BX842579 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0004540 InterPro:IPR022967
SMART:SM00316 KO:K08300 TIGRFAMs:TIGR00757 EMBL:CP003248 PIR:B70681
RefSeq:NP_216960.1 RefSeq:YP_006515881.1 ProteinModelPortal:P71905
SMR:P71905 PRIDE:P71905 EnsemblBacteria:EBMYCT00000003844
GeneID:13319154 GeneID:885911 KEGG:mtu:Rv2444c KEGG:mtv:RVBD_2444c
PATRIC:18154033 TubercuList:Rv2444c HOGENOM:HOG000246380
OMA:SRYTQIA ProtClustDB:CLSK791854 Uniprot:P71905
Length = 953
Score = 418 (152.2 bits), Expect = 7.8e-39, Sum P(2) = 7.8e-39
Identities = 101/315 (32%), Positives = 169/315 (53%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT L RF + + G+SRK+ ER RLK I
Sbjct: 428 LKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTERQRLKEI 487
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + P G+ IRT + G ++++ D+ L W+ I AK A E GA +
Sbjct: 488 LREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQI--EAK--AQETKEKAAGAA-V 542
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD------ 464
L+ + +++D FNE ++V ++ + Y+ +AP+L ++ Y+
Sbjct: 543 ALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADGPD 602
Query: 465 -KRIP-LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKE 522
+ P +F I+E++ + ++V LP+GG+LVI++TEA+ IDVN G G G + E
Sbjct: 603 GQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTGAGGNLE 661
Query: 523 KAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKV 582
+ + NL AA++I R+LRLR M +SN+ LV + +++ RDR+ +V
Sbjct: 662 QTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQV 721
Query: 583 SELSRHGLMEITRKR 597
SE++ GL+++TRKR
Sbjct: 722 SEVTSLGLVQLTRKR 736
Score = 71 (30.1 bits), Expect = 7.8e-39, Sum P(2) = 7.8e-39
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
++YLG+V ++P+M AFV+IG R ++
Sbjct: 377 NIYLGIVQNVLPSMEAAFVDIGRGRNGVL 405
>TIGR_CMR|APH_0345 [details] [associations]
symbol:APH_0345 "ribonuclease, Rne/Rng family"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] InterPro:IPR003029 InterPro:IPR004659
InterPro:IPR019307 Pfam:PF00575 Pfam:PF10150 GO:GO:0003723
GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 eggNOG:COG1530 KO:K08300
TIGRFAMs:TIGR00757 HOGENOM:HOG000258026 OMA:IKEERGN
ProtClustDB:CLSK749565 RefSeq:YP_504952.1 ProteinModelPortal:Q2GKZ9
STRING:Q2GKZ9 GeneID:3931245 KEGG:aph:APH_0345 PATRIC:20949278
BioCyc:APHA212042:GHPM-374-MONOMER Uniprot:Q2GKZ9
Length = 636
Score = 338 (124.0 bits), Expect = 6.7e-29, Sum P(3) = 6.7e-29
Identities = 115/386 (29%), Positives = 186/386 (48%)
Query: 222 VLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSE-VPDDSHTSH--PQGTKD 278
+LKN+ G + + E E+ GD ES+ K + + ++ +G
Sbjct: 98 LLKNLYGD--NSEQDEHSEEEECTGDAEPSEESSSEDADKVQSLAEEQRAGKRCSEGKNG 155
Query: 279 S-KHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDR--I 333
K P + +Q ++ K++VQ+ KE G+K T + Y L R+ I + +
Sbjct: 156 KGKLVPHKMYKVQNVIKVDQKLMVQITKEERGSKCATFSTYIVLAGRYCIFMPNSGNKNS 215
Query: 334 GVSRKITG-VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391
G+SR+I V R LK ++ P+ G+ IRT + + +EL++DL L STW +
Sbjct: 216 GISRRIDDCVHRKNLKEFLDEMKLPKEAGVIIRTAGSNRTHKELERDLSYLQSTWDEV-- 273
Query: 392 HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQD 451
KS+ E V P LL+ ++D+ +E V +VV + + V Y +
Sbjct: 274 --KSSF----ESVTH--PSLLYVEADVIKRTLRDFCDENVHDVVVAGSKAFGLVKEYAKS 325
Query: 452 IAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGG 511
+ + RV Y IP+F + + +I + + ++ LP+GG LVI TEALVSIDVN G
Sbjct: 326 MFGNRL-RVRTYKGSIPIFTHYRVNAQILELYTDKIYLPSGGYLVITPTEALVSIDVNSG 384
Query: 512 HGMFGHGSSKEKAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKK 571
M G S +E A N+ A K+IAR++ LR M R V EV++
Sbjct: 385 R-MTGEDSIEETAYR-TNMEAVKEIARQVNLRGLSGLIVIDFIDMVKYRYCRAVEAEVRE 442
Query: 572 AVERDRSMVKVSELSRHGLMEITRKR 597
A + D++ ++ +S GLMEI+R+R
Sbjct: 443 AFKGDKAKIQFGYISAFGLMEISRQR 468
Score = 52 (23.4 bits), Expect = 6.7e-29, Sum P(3) = 6.7e-29
Identities = 19/92 (20%), Positives = 39/92 (42%)
Query: 114 SVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR-EPFIFPPFRCRTKKQEVNGSASAA 172
++Y VV ++ P++ F+ G + + E + P + + G S
Sbjct: 50 NIYFAVVRRIEPSLQAVFIEYGVGKHGFLPFSEIAVEHYQIPQEEKDVLLKNLYGDNSEQ 109
Query: 173 LEEHAVTYDNDSTSHNTEDVAEADSQD-DLVQ 203
+EH+ + + + + E E+ S+D D VQ
Sbjct: 110 -DEHS---EEEECTGDAEPSEESSSEDADKVQ 137
Score = 42 (19.8 bits), Expect = 6.7e-29, Sum P(3) = 6.7e-29
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 676 VAISLLRSAEARANKSGKKVTLVPI 700
++ S+LR ANK+ +K+ +V +
Sbjct: 496 ISASILRDVSYVANKNPEKILVVSV 520
>TIGR_CMR|ECH_0470 [details] [associations]
symbol:ECH_0470 "ribonuclease, Rne/Rng family"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR003029 InterPro:IPR004659 InterPro:IPR019307
Pfam:PF00575 Pfam:PF10150 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0004540 InterPro:IPR022967 SMART:SM00316
eggNOG:COG1530 KO:K08300 TIGRFAMs:TIGR00757 RefSeq:YP_507286.1
ProteinModelPortal:Q2GGZ7 STRING:Q2GGZ7 GeneID:3927099
KEGG:ech:ECH_0470 PATRIC:20576414 HOGENOM:HOG000258026 OMA:IKEERGN
ProtClustDB:CLSK749565 BioCyc:ECHA205920:GJNR-471-MONOMER
Uniprot:Q2GGZ7
Length = 606
Score = 335 (123.0 bits), Expect = 7.0e-28, Sum P(2) = 7.0e-28
Identities = 96/306 (31%), Positives = 156/306 (50%)
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDR--IGVSRKITGVE-RTRLKVIAK 352
K++ Q+VKE G KG T + + L R+ I + + G+SR+I + R LK
Sbjct: 164 KLMAQIVKEERGNKGATFSTFITLVGRYCIFMPNSGNKNSGISRRIEDADDRKILKNFLS 223
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
++ P+ G+ IRT + + +E+++DL L STW++I S + VEG +
Sbjct: 224 AIKLPKESGIIIRTAGSNKNQKEIEQDLSYLQSTWRSIQNSYISVTMPLLLYVEGDI--- 280
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+ +TL +DY +E + ++V Y ++ + + R+ +Y +P+F
Sbjct: 281 ----IKRTL---RDYCDENTQDIIVSGSYAYELAKECVKFMFRNRV-RLRIYKGSVPIFS 332
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+ IE +I + V LP+GG +VI TEALVSID+N G M G S +E A N+
Sbjct: 333 YYKIESQICELYGNVVNLPSGGYMVITPTEALVSIDINSGK-MTGEDSIEETAY-KTNME 390
Query: 532 AAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
A K+IAR++ LR M R V E+K+A + D++ V+ +S GLM
Sbjct: 391 AVKEIARQVNLRGLSGLIVIDFIDMLKYRYCRSVESEIKEAFKYDKAKVQFGYISTFGLM 450
Query: 592 EITRKR 597
EI+R+R
Sbjct: 451 EISRQR 456
Score = 48 (22.0 bits), Expect = 7.0e-28, Sum P(2) = 7.0e-28
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 25 YEDT-VKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLPEKGSLISKDN 72
YED+ VK D KS D+++ D+ K QD S +K +L+ KDN
Sbjct: 97 YEDSDVKNDDDVKS---VDDSVACDT---KDQDNVSDCNDKLTLLKKDN 139
Score = 48 (22.0 bits), Expect = 7.0e-28, Sum P(2) = 7.0e-28
Identities = 20/96 (20%), Positives = 39/96 (40%)
Query: 109 NVQC--DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVN 166
N +C +VY VV ++ P++ F+ G ++ + + + K +V
Sbjct: 37 NKKCLKGNVYCAVVKRIEPSLQAVFIEYGANKHGFLPFSEISLDYYNISEEEKEKLYQVL 96
Query: 167 GSASAALEEHAVTYDNDSTSHNTEDVAE-ADSQDDL 201
S + V +DS + +T+D +D D L
Sbjct: 97 YEDSDVKNDDDVKSVDDSVACDTKDQDNVSDCNDKL 132
>TIGR_CMR|NSE_0120 [details] [associations]
symbol:NSE_0120 "ribonuclease, Rne/Rng family"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR003029 InterPro:IPR004659 InterPro:IPR019307
Pfam:PF00575 Pfam:PF10150 PROSITE:PS50126 GO:GO:0003723
GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0004540 EMBL:CP000237 GenomeReviews:CP000237_GR
InterPro:IPR022967 SMART:SM00316 eggNOG:COG1530 KO:K08300
TIGRFAMs:TIGR00757 RefSeq:YP_506020.1 ProteinModelPortal:Q2GES6
STRING:Q2GES6 GeneID:3932137 KEGG:nse:NSE_0120 PATRIC:22680345
HOGENOM:HOG000127350 OMA:FNATEVI ProtClustDB:CLSK2527676
BioCyc:NSEN222891:GHFU-156-MONOMER Uniprot:Q2GES6
Length = 549
Score = 296 (109.3 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 99/377 (26%), Positives = 174/377 (46%)
Query: 231 IDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVP----DDSHTSHPQGTKDSKHTPGEK 286
+DD +A F ++L G++ GF P SE+P D + KH K
Sbjct: 48 VDDSL-QAAFVEYLPGEY-------GFLPF-SEIPVIYFDLLEEVKANAIAEGKHVNLYK 98
Query: 287 TWLQ---VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE 343
+ ++KG + VQV KE TK TLTAY KL R+ +L+ + +S++I +
Sbjct: 99 HFNATEVIKKGLVLFVQVTKEKRRTKDVTLTAYVKLPGRYCVLMPFLKDLILSKQIVDEQ 158
Query: 344 R-TRLKVIAKT-LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIM-EHAKSAALAA 400
+RL A+ + G+ + A + + D LLS W+ ++ ++ KS A
Sbjct: 159 AVSRLTHFAEEEMANRKCGVVFKPYCADADKKNILGDYCSLLSEWEKVVSQNDKSKA--- 215
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+ R ++D ++ V +++V+ Y E Y+Q+ +
Sbjct: 216 --------PRLVFREANLVKKFLRDSYDGSVGEVIVNHSDVYQEAKDYIQNSLHFENPNI 267
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY +P+FDK+ +E +++ + + + L NG +VI TEAL ++DVN G S+
Sbjct: 268 TLYSDTLPVFDKYKVEPQVDGLYEETIYLRNGAYIVINTTEALTAVDVNSGR--MKKESN 325
Query: 521 KEKAILDVNLAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMV 580
E+ VN+ A +I R L LR M + V + A +R RS V
Sbjct: 326 IEETAYKVNMEAVAEIVRHLELRGIAGIVVIDFIDMNNSKYMLNVERALLDAFKRYRSRV 385
Query: 581 KVSELSRHGLMEITRKR 597
+++ +++ GL+ ++++R
Sbjct: 386 QIAPINKFGLIALSKQR 402
Score = 38 (18.4 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 111 QCDSVYLGVVTKLVPNMGGAFV 132
Q ++Y G+V K+ ++ AFV
Sbjct: 36 QKGNIYQGIVFKVDDSLQAAFV 57
>TIGR_CMR|BA_4677 [details] [associations]
symbol:BA_4677 "ribonuclease, Rne/Rng family"
species:198094 "Bacillus anthracis str. Ames" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR004659 InterPro:IPR019307 Pfam:PF10150 EMBL:AE016879
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0004540 InterPro:IPR022967 SMART:SM00316
TIGRFAMs:TIGR00757 HOGENOM:HOG000258025 KO:K08301
RefSeq:NP_846891.2 RefSeq:YP_030590.1 ProteinModelPortal:Q81LE5
DNASU:1085633 EnsemblBacteria:EBBACT00000008640
EnsemblBacteria:EBBACT00000022043 GeneID:1085633 GeneID:2850974
KEGG:ban:BA_4677 KEGG:bat:BAS4343 PATRIC:18786938
ProtClustDB:CLSK917393 BioCyc:BANT260799:GJAJ-4398-MONOMER
Uniprot:Q81LE5
Length = 463
Score = 247 (92.0 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 75/245 (30%), Positives = 124/245 (50%)
Query: 354 LQPEGFGLTI-RTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
++ EG G I R+ + +EE+Q +++ L + + E K +E +G P+LL
Sbjct: 138 IEVEGTGGYIFRSASEKGEIEEIQAEMQRL----QQLYEELKRK----EE--QGKAPLLL 187
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
HR + Q+ E ++K+VVD+ + L++ ++V Y+++ +F+
Sbjct: 188 HRPATFLDRVFQENPIETIEKVVVDT----RSIVKELEEKVGK--EKVSFYNEKSSMFNH 241
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE EI L K V LPNG L++EQ E + IDVN G F + + +L N A
Sbjct: 242 FGIEREIEKALQKIVWLPNGAYLIVEQMETMTVIDVNTGK--FTGKQNLQDTVLRTNELA 299
Query: 533 AKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A++IAR+LRLR M +K V E + A++ DR+ +V + G++E
Sbjct: 300 AEEIARQLRLRDIGGMILIDFINMKRREDKEKVRECLVAAMQNDRTYTRVLGFTELGILE 359
Query: 593 ITRKR 597
+TRKR
Sbjct: 360 MTRKR 364
Score = 144 (55.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 44/149 (29%), Positives = 79/149 (53%)
Query: 290 QVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKV 349
++ +G V+VQVVKE + TKGP LTA + ++ + + + VSRKI +R R ++
Sbjct: 77 RIHEGQAVLVQVVKEAIDTKGPKLTANIEFTGKYVVYMPYDEMRAVSRKIKNNKR-RQQL 135
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++ G G R+ + +EE+Q +++ L + + E K +E +G P
Sbjct: 136 LQIEVEGTG-GYIFRSASEKGEIEEIQAEMQRL----QQLYEELKRK----EE--QGKAP 184
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDS 438
+LLHR + Q+ E ++K+VVD+
Sbjct: 185 LLLHRPATFLDRVFQENPIETIEKVVVDT 213
Score = 56 (24.8 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 115 VYLGVVTKLVPNMGGAFVNIG 135
+Y+G + + + M AFVNIG
Sbjct: 40 IYIGRIVRTIAGMNAAFVNIG 60
>TIGR_CMR|CHY_0364 [details] [associations]
symbol:CHY_0364 "ribonuclease, Rne/Rng family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004540 "ribonuclease
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR003029 InterPro:IPR004659 InterPro:IPR019307
Pfam:PF00575 Pfam:PF10150 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0004540 InterPro:IPR022967 SMART:SM00316
eggNOG:COG1530 TIGRFAMs:TIGR00757 HOGENOM:HOG000258025 KO:K08301
OMA:HQRQVLR RefSeq:YP_359227.1 ProteinModelPortal:Q3AF57
STRING:Q3AF57 GeneID:3727774 KEGG:chy:CHY_0364 PATRIC:21273891
BioCyc:CHYD246194:GJCN-365-MONOMER Uniprot:Q3AF57
Length = 392
Score = 203 (76.5 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 71/245 (28%), Positives = 120/245 (48%)
Query: 360 GLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQT 419
G +RT+A G E+L ++ + L W+ I+E +K+A P LL++
Sbjct: 143 GFIVRTLA-GEE-EDLLQEAKRLYEEWQGILERSKTAQ----------APALLYKE---- 186
Query: 420 LSIVQDYFNEKVKKMVVDSPRTYHEVTSY-LQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
D F +++++ D T V + L +I +R + P++ FN+ EE
Sbjct: 187 ----DDLFTWCLRELL-DKDFTALYVDDFELLEIGQKFRERFRVLLP--PIYKSFNVMEE 239
Query: 479 IN------NMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
N + +RV L NGG LVIE+TEAL +IDVN G G KE A +NL A
Sbjct: 240 FNLIRTMEKLTRERVWLKNGGILVIEKTEALTAIDVNSGK-FTGKKDLKETAF-KINLEA 297
Query: 533 AKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A++IA+++RLR + ++ + +++ RD++ VK++ + GL+E
Sbjct: 298 AREIAKQIRLRNIGGIIVVDFISLLEEERWEEILRVMEEEFLRDKAKVKITGKTPSGLVE 357
Query: 593 ITRKR 597
I R++
Sbjct: 358 IARQK 362
Score = 118 (46.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 34/112 (30%), Positives = 56/112 (50%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
+ V+ G V+V+VVK KG L+ L R + + G+SRK+T +R
Sbjct: 73 INVKPGDVVLVRVVKNPTAQKGAKLSTVISLPGRNLVYFPQKEMKGISRKLTEDKREYYH 132
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+ + L G G +RT+A G E+L ++ + L W+ I+E +K+A A
Sbjct: 133 RVLENLNLPG-GFIVRTLA-GEE-EDLLQEAKRLYEEWQGILERSKTAQAPA 181
Score = 71 (30.1 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 111 QCDSVYLGVVTKLVPNMGGAFVNIG 135
Q + +YLG V K+VP + AFVN+G
Sbjct: 37 QINDIYLGKVEKVVPGLQAAFVNLG 61
>TIGR_CMR|SPO_A0079 [details] [associations]
symbol:SPO_A0079 "ribonuclease, Rne/Rng family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004540 "ribonuclease
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR019307 Pfam:PF10150 GO:GO:0003723 KO:K01128
EMBL:CP000032 GenomeReviews:CP000032_GR RefSeq:YP_164910.1
ProteinModelPortal:Q5LLE8 GeneID:3196772 KEGG:sil:SPOA0079
PATRIC:23381462 HOGENOM:HOG000141556 OMA:APMPKKD
ProtClustDB:CLSK935194 Uniprot:Q5LLE8
Length = 340
Score = 107 (42.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 36/128 (28%), Positives = 59/128 (46%)
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+ + + + + PLP GG L I+ T ALV++DVN G ++ +KA N
Sbjct: 210 FEDHGVLDALERVRGIAEPLPGGGHLYIQPTRALVAVDVNTGSDT--SLAAGQKA----N 263
Query: 530 LAAAKQIARELRLRXXXXXXXXXXXXMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
A AK + R LR+R MA ++R ++ A++ D ++ + G
Sbjct: 264 FACAKLLPRVLRIRGLGGQITLDLAPMAK-KDRRGFEAALRAALKADSEETTLAGWTPLG 322
Query: 590 LMEITRKR 597
E+ RKR
Sbjct: 323 HYELQRKR 330
Score = 91 (37.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 28/100 (28%), Positives = 50/100 (50%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIA- 351
G ++VQV K +TA +SR+ I+ + +SR I ER RL IA
Sbjct: 75 GAHLLVQVTGYAEPGKAIPVTAKLLFKSRYAIVTPGAPGLNLSRNIRDEAERDRLLEIAH 134
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391
+ ++ GFGL +R+ A E + +D+ +++ + ++E
Sbjct: 135 EEMEGHGFGLILRSSCAEVEGEVIAEDIAAMIAQAQQVLE 174
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 708 666 0.00098 120 3 11 23 0.44 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 621 (66 KB)
Total size of DFA: 337 KB (2170 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 59.93u 0.10s 60.03t Elapsed: 00:00:03
Total cpu time: 59.94u 0.10s 60.04t Elapsed: 00:00:03
Start: Tue May 21 01:27:06 2013 End: Tue May 21 01:27:09 2013