BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005219
(708 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255567240|ref|XP_002524601.1| hypothetical protein RCOM_1213430 [Ricinus communis]
gi|223536154|gb|EEF37809.1| hypothetical protein RCOM_1213430 [Ricinus communis]
Length = 963
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/763 (68%), Positives = 602/763 (78%), Gaps = 58/763 (7%)
Query: 1 MALSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESL 60
+ LSERDQP+EEPWL QSS I + +D + P++ + +N +++ D+++Q Q + L
Sbjct: 198 LVLSERDQPVEEPWLLQSSIIFVISKDKIMPNISKNNNIAANDSKAWDANSQHLQVKDKL 257
Query: 61 LPEKGS-LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
P GS I KD+ +ST+ILINSSICTMQRIAVLE+ KLVELLLEPVK+NVQCDSVYLGV
Sbjct: 258 SPADGSNFILKDDSISTIILINSSICTMQRIAVLEEGKLVELLLEPVKTNVQCDSVYLGV 317
Query: 120 VTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVT 179
VTK VP+MGGAFVNIG+SRPSLMDIK REPFIFPPFR +TKK+++N S +LEEH
Sbjct: 318 VTKFVPHMGGAFVNIGHSRPSLMDIKQSREPFIFPPFRQKTKKEKMNDSGLDSLEEHQAA 377
Query: 180 YDNDSTSHNTE---DVAEADSQDDLVQFEHNDDEEHDGD-DFDVSEVLKNVNGSIIDDGE 235
N+ TS + E DVAE SQ+DLV HND +EH+ D DFD+SEV +NVNGSI+D G+
Sbjct: 378 DGNEHTSQDIEGIDDVAEFISQEDLVSLPHNDHDEHEADEDFDISEVKENVNGSIVDYGQ 437
Query: 236 PEADFEDFLEG-DHHLDGE-SNGFFPSKSEVPDDSHTSHPQGTKDSKHT-PGEKTWLQVQ 292
+ FE FL G HHL+GE N PS++E + S S PQ KDS+H + W QV+
Sbjct: 438 ADPRFEHFLGGRQHHLEGEIMNRVVPSETEGSNGSKMSQPQYRKDSEHLLANDNKWTQVR 497
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAK 352
KGTK++VQVVKEGLGTKGPTLTAYPKLRSRFWIL CDRIG+S+KI+G+ERTRL+VIAK
Sbjct: 498 KGTKIVVQVVKEGLGTKGPTLTAYPKLRSRFWILHARCDRIGISKKISGIERTRLRVIAK 557
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
TLQP GFGLT RTVA GHSLEELQKDLEGLLSTWKNI+EHAKSAALAADEG+EGA+P++L
Sbjct: 558 TLQPPGFGLTARTVAGGHSLEELQKDLEGLLSTWKNILEHAKSAALAADEGIEGAIPVIL 617
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H AMGQTLS+VQDYF+EKVKKMVVDSPRTYHEVT+YLQ+IAPDLCDRVELYDKRIPLFD+
Sbjct: 618 HTAMGQTLSVVQDYFSEKVKKMVVDSPRTYHEVTNYLQEIAPDLCDRVELYDKRIPLFDE 677
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IEEEINN+LSKRVPLP GGSLVIEQTEALVSIDVNGGH MFG G+S+EKAILDVNL A
Sbjct: 678 YKIEEEINNILSKRVPLPRGGSLVIEQTEALVSIDVNGGHVMFGQGNSQEKAILDVNLEA 737
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
AK+IARELRLRDIGGIIVVDFIDMADDSNKRLVYEE+K AVE DRSMVKVSELS+HGLME
Sbjct: 738 AKRIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEMKTAVEGDRSMVKVSELSKHGLME 797
Query: 593 ITRKR----------------------------------------AMMEQKADPENPKSW 612
ITRKR AMM+QKA PENPK+W
Sbjct: 798 ITRKRVRPSVSFMISEPCTCCHATGRVEALETSFSKIEQEICRLLAMMDQKAYPENPKTW 857
Query: 613 PRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLK----------VARGFTRGAFEVI 662
PRF+LRVDHHMCNYLTSGKRTRLA+LSSSLK WILLK VARGFTRGAFEV
Sbjct: 858 PRFLLRVDHHMCNYLTSGKRTRLAILSSSLKVWILLKMLITRALTPQVARGFTRGAFEVQ 917
Query: 663 PYTDDKASENQHQVAISLLRSAEARANKSGKKVTLVPIKKLKS 705
P+ DD+A+ENQHQVAIS+LR E R SGKKVTLVP+K +S
Sbjct: 918 PFADDQANENQHQVAISVLRQTETRTINSGKKVTLVPVKTCRS 960
>gi|224131900|ref|XP_002321206.1| predicted protein [Populus trichocarpa]
gi|222861979|gb|EEE99521.1| predicted protein [Populus trichocarpa]
Length = 923
Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/753 (69%), Positives = 591/753 (78%), Gaps = 60/753 (7%)
Query: 2 ALSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLL 61
ERDQP+EEPWL QS I + ++D + D+ + S+ +D ++Q + + L
Sbjct: 185 VFHERDQPLEEPWLLQSPVISVVFKDKLTQDVSKNSDTVEDGLKKFKVNDQGMKVKDKLS 244
Query: 62 PEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
+L KD+ VSTVILI+SSICTMQRIAVLEDEKLVELLLEPVK+ V CDSVY+GVVT
Sbjct: 245 ANGSNLNLKDDSVSTVILISSSICTMQRIAVLEDEKLVELLLEPVKNTVLCDSVYIGVVT 304
Query: 122 KLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYD 181
KLVP+MGGAFVNIG+SRPSLMDIK REPFIFPPF RTKK EVNGS A EEH ++
Sbjct: 305 KLVPHMGGAFVNIGSSRPSLMDIKQNREPFIFPPFCQRTKKGEVNGSVLKAFEEHPAAHE 364
Query: 182 NDSTSHNTE---DVAEADSQDDLVQFEHNDDEEHD-GDDFDVSEVLKNVNGSIIDDGEPE 237
N+ TSH+ E DV+E DL F H+D EEH+ DDFDVSEV +NVNGSI+D GE +
Sbjct: 365 NEHTSHDVEVIDDVSEFVFHSDLAPFLHDDHEEHEVDDDFDVSEVKENVNGSIVDYGEVD 424
Query: 238 ADFEDFLEG-DHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT-PGEKTWLQVQKGT 295
ADFE FL+G +HHL+G D + SH Q KD+KHT E W QV+KGT
Sbjct: 425 ADFEQFLDGREHHLEG-------------DTASLSH-QDIKDAKHTLTSENKWSQVRKGT 470
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQ 355
KVIVQVVKEGLGTKGPT+TAYPKLRSRFWILIT CDRIGVS+K++GVERTRLKVIAKTLQ
Sbjct: 471 KVIVQVVKEGLGTKGPTVTAYPKLRSRFWILITRCDRIGVSKKVSGVERTRLKVIAKTLQ 530
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P GFGLT+RTVAAGHS EELQKDLEGLLSTWK+IMEHAKSAALA DEGVEGA+P++LHRA
Sbjct: 531 PPGFGLTVRTVAAGHSFEELQKDLEGLLSTWKSIMEHAKSAALAEDEGVEGAIPVVLHRA 590
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
MGQTLS+VQDYF+EKV+KM+VDSPRTYHEVT+YLQ+IAPDLC RVELYDKR PLFD+F I
Sbjct: 591 MGQTLSVVQDYFSEKVRKMMVDSPRTYHEVTNYLQEIAPDLCGRVELYDKRTPLFDEFKI 650
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
EEEINN+LSKRVPL +GGSLVIEQTEALVSIDVNGGH M +S+EKAILDVNLAAAK+
Sbjct: 651 EEEINNILSKRVPLSSGGSLVIEQTEALVSIDVNGGHVMLRQRTSQEKAILDVNLAAAKR 710
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
IARELRLRDIGGIIVVDFIDMAD+SNKRLVYE VK+AVERDRS VKVSELS HGLMEITR
Sbjct: 711 IARELRLRDIGGIIVVDFIDMADESNKRLVYEAVKRAVERDRSTVKVSELSNHGLMEITR 770
Query: 596 KR----------------------------------------AMMEQKADPENPKSWPRF 615
KR A M+QKAD ENPK+WPRF
Sbjct: 771 KRVRPSVTFMISEPCTCCHATGRVEALETSFSKIEQEICRSLATMDQKADHENPKTWPRF 830
Query: 616 ILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKASENQHQ 675
ILRVDHHMCNYLTSGKRTRLAVLSSSLK WILLKVARGFTRGAFEV +TDDK +++Q Q
Sbjct: 831 ILRVDHHMCNYLTSGKRTRLAVLSSSLKVWILLKVARGFTRGAFEVKQFTDDKTNKDQQQ 890
Query: 676 VAISLLRSAEARANKSGKKVTLVPIKKLKSGRK 708
VAIS+LR AEARA KSG KVTLVP+KK K+GRK
Sbjct: 891 VAISVLRQAEARAKKSGGKVTLVPVKKGKAGRK 923
>gi|225447486|ref|XP_002267175.1| PREDICTED: uncharacterized protein LOC100256290 [Vitis vinifera]
Length = 1019
Score = 999 bits (2583), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/755 (69%), Positives = 598/755 (79%), Gaps = 52/755 (6%)
Query: 2 ALSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLL 61
+S RDQP+EEPWL QSS L+A ++ + +M + + + E L +Q + TE LL
Sbjct: 269 TVSMRDQPVEEPWLLQSS--LIASKEEMVSNMSKNIDAAQVEVSHLKLLDQSYLHTEKLL 326
Query: 62 PEKGS-LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
PE+G+ LISKD+ VSTVILINSSICTMQRIAVLED LVELLLEPVKSNVQCDSVYLGVV
Sbjct: 327 PEEGTNLISKDDSVSTVILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVV 386
Query: 121 TKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTY 180
TKLVP+MGGAFVNIG+SRPSLMDIK REPFIFPPF TK+++ NGS L E+ + +
Sbjct: 387 TKLVPHMGGAFVNIGSSRPSLMDIKRSREPFIFPPFHHGTKEKD-NGSVFNTLRENPIAH 445
Query: 181 DNDSTSHNTE--DVAEADSQDDLVQFEHNDDEEHD-GDDFDVSEVLKNVNGSIIDDGEPE 237
+N+ TS++ E D+ E D QDD VQF H+D EEH+ DDFDV + K++NGSI+D G E
Sbjct: 446 ENEHTSYDVEADDLREVDFQDDPVQFAHDDFEEHEVEDDFDVL-IKKDLNGSIVDHGGVE 504
Query: 238 ADFEDFLEG-DHHLDGES-NGFFPSKSEVP-DDSHTSHPQGTKDSKHTPG-EKTWLQVQK 293
DF+D+ +G ++H+D E+ N F P + E DS KDS+ E W QVQK
Sbjct: 505 VDFDDYSDGIENHIDSETINNFLPVELEKGFHDSQLPPLLEMKDSRQAYTVENKWAQVQK 564
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
GTK+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C+RIGVS+KI+GVERTRL+VIAKT
Sbjct: 565 GTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTCCNRIGVSKKISGVERTRLRVIAKT 624
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
LQP+GFGLT+RTVAAGH+LEELQKDLEGLLSTWKNI+EHAKSAALAADEGVEGA+P++LH
Sbjct: 625 LQPKGFGLTVRTVAAGHTLEELQKDLEGLLSTWKNIVEHAKSAALAADEGVEGAIPVILH 684
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
RAMGQTLS+VQDYFNEKV+ MVVDSPRTYHEVT+YLQ+IAPDLCDRVELY+KR+PLFD+F
Sbjct: 685 RAMGQTLSVVQDYFNEKVESMVVDSPRTYHEVTNYLQEIAPDLCDRVELYNKRVPLFDEF 744
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
NIEEEINN+LSKRVPLPNGGSLVIEQTEALVSIDVNGGHGM G+G+S+EKAILDVNLAAA
Sbjct: 745 NIEEEINNILSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMLGNGTSQEKAILDVNLAAA 804
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
KQIARELRLRDIGGIIVVDFIDM DDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI
Sbjct: 805 KQIARELRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 864
Query: 594 TRKR----------------------------------------AMMEQKADPENPKSWP 613
TRKR AM E+KADPENP SWP
Sbjct: 865 TRKRVRPSVTFMISEPCSCCHGTGRVEALETSFSKIEQEICRLLAMTEEKADPENPNSWP 924
Query: 614 RFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKASENQ 673
RFIL VD MCNYLTSGKRTRLA+LSSSLK WILLKVARGFTRGAFEV P+TDDK + +
Sbjct: 925 RFILMVDRFMCNYLTSGKRTRLAILSSSLKVWILLKVARGFTRGAFEVKPFTDDKVNISS 984
Query: 674 HQVAISLLRSAEARANKSGKKVTLVPIKKLKSGRK 708
HQ IS+LR EA + VTL PIKK K+G K
Sbjct: 985 HQGPISMLRPTEAGTYNPRRNVTLFPIKKWKTGGK 1019
>gi|356551838|ref|XP_003544280.1| PREDICTED: uncharacterized protein LOC100809907 [Glycine max]
Length = 983
Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/754 (66%), Positives = 590/754 (78%), Gaps = 74/754 (9%)
Query: 2 ALSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLL 61
LSE QP+EEPWL+ ++ + ++ ++ E + K++ + D + + LL
Sbjct: 251 VLSENYQPVEEPWLYSFCSVV--SNNKMESNVSETGDTAKEKVKLADRE-------QLLL 301
Query: 62 PEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
E +++SKD+F ST+ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVY+GVVT
Sbjct: 302 EESSNIMSKDSF-STIILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYVGVVT 360
Query: 122 KLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYD 181
KLVP+MGGAFV+IGNSR + MDIK +EPFIFPPFR RTKKQE++
Sbjct: 361 KLVPHMGGAFVSIGNSRSAFMDIKQNKEPFIFPPFRQRTKKQEIDLEGK----------- 409
Query: 182 NDSTSHN---TEDVAEADSQDDLVQFEHNDDEEHDGDD-FDVSEVLK-NVNGSIIDDGEP 236
ND TSH ++ ++ +S+D ++ HND +EH+GDD F +SEVLK NVNGS++DD E
Sbjct: 410 NDHTSHVIDVSDGTSDINSEDGCLKSVHNDYDEHEGDDDFYISEVLKENVNGSMVDD-EV 468
Query: 237 EADFEDFLEG-DHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKH----TPGEKTWLQV 291
EADFED +EG D H++GE+N S + S TSH TKD+K T GE W+QV
Sbjct: 469 EADFEDDIEGSDVHIEGETNN--SSLLLGMNGSVTSHILQTKDTKKATHVTSGENKWIQV 526
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIA 351
+KGTKVIVQVVKE LGTKGPTLTAYPKL+SRFW+LI CD+IGVS+KI+GVERTRLKVIA
Sbjct: 527 RKGTKVIVQVVKEDLGTKGPTLTAYPKLKSRFWVLIACCDKIGVSKKISGVERTRLKVIA 586
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
KTLQPEGFGLT+RTVAAGHS EELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP++
Sbjct: 587 KTLQPEGFGLTVRTVAAGHSFEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPVI 646
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
LHRAMGQTLS+VQDYFNE VKKMVVDSPRT+HEVT+YLQ+IAPDLCDRVELYDK++PLFD
Sbjct: 647 LHRAMGQTLSVVQDYFNENVKKMVVDSPRTFHEVTNYLQEIAPDLCDRVELYDKKVPLFD 706
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+FNIE EI+N+LSKRVPL NGGSL+IEQTEALVSIDVNGGHGM GHG+S+++AILDVNLA
Sbjct: 707 EFNIEGEIDNILSKRVPLANGGSLIIEQTEALVSIDVNGGHGMLGHGNSQQQAILDVNLA 766
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AAKQIARELRLRDIGGIIVVDFIDM D++NKRLVYEEVKKA+ERDRSMVKVSELSRHGLM
Sbjct: 767 AAKQIARELRLRDIGGIIVVDFIDMTDEANKRLVYEEVKKAIERDRSMVKVSELSRHGLM 826
Query: 592 EITRKR----------------------------------------AMMEQKADPENPKS 611
EITRKR A M+ KADPE PKS
Sbjct: 827 EITRKRVRPSVTFMISEPCACCHATGRVEALETSFSKIEQQICRLLATMDHKADPEKPKS 886
Query: 612 WPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKASE 671
WP+FILRVDH MC YLTSGK+TRLA LSSSLK WILLKVARGF RG+FEV P+TDDK +
Sbjct: 887 WPKFILRVDHRMCEYLTSGKKTRLATLSSSLKVWILLKVARGFIRGSFEVKPFTDDKVEK 946
Query: 672 NQHQVAISLLRSAEARANKSGKKVTLVPIKKLKS 705
NQH+VAIS+LRS+EAR G+ VTLV +KK K+
Sbjct: 947 NQHKVAISMLRSSEARTKTPGQNVTLVQVKKSKA 980
>gi|356498920|ref|XP_003518294.1| PREDICTED: uncharacterized protein LOC100795436 [Glycine max]
Length = 937
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/752 (66%), Positives = 583/752 (77%), Gaps = 70/752 (9%)
Query: 2 ALSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLL 61
LSE QP+EEPWL S + + + ++ ++ E + K++ + D + + LL
Sbjct: 205 VLSENYQPVEEPWL--HSFLSIVSNNKMESNVSENGDTAKEKVKLADRE-------QLLL 255
Query: 62 PEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
E +++SKD+F ST+ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVY+GVVT
Sbjct: 256 EESSNIMSKDSF-STIILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYVGVVT 314
Query: 122 KLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYD 181
KLVP+MGGAFV+IGNSR + MDIK +EPFIFPPFR RT KQE+N +
Sbjct: 315 KLVPHMGGAFVSIGNSRSAFMDIKQNKEPFIFPPFRQRTAKQEIN-----------LEGK 363
Query: 182 NDSTSHN---TEDVAEADSQDDLVQFEHNDDEEHDG-DDFDVSEVLK-NVNGSIIDDGEP 236
ND TSH ++ +++ S+D ++ HND +EH+G DDF + EVLK NVNGS++DD E
Sbjct: 364 NDHTSHVVDVSDGISDIKSEDGCLKSVHNDYDEHEGYDDFYIPEVLKENVNGSMVDD-EV 422
Query: 237 EADFEDFLEG-DHHLDGESNGF-FPSKSEVPDDSHTSHPQGTKDSKHTP-GEKTWLQVQK 293
E DFED +EG D H++GE+N F + +SH + TK + H GE W+QV+K
Sbjct: 423 EVDFEDDIEGSDVHIEGETNNSSFLLGTNGSVNSHILQTKDTKKATHVASGENKWIQVRK 482
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
GTKVIVQVVKE LGTKGPTLTAYPKLRSRFW+LI CD+IGVS+KI+GVERTRLKVIAKT
Sbjct: 483 GTKVIVQVVKEDLGTKGPTLTAYPKLRSRFWVLIACCDKIGVSKKISGVERTRLKVIAKT 542
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
LQPEGFGLT+RTVAAGHS EELQKDLE LLSTWKNIMEHAKSAALAADEGVEGAVP++LH
Sbjct: 543 LQPEGFGLTLRTVAAGHSFEELQKDLERLLSTWKNIMEHAKSAALAADEGVEGAVPVILH 602
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
RAMGQTLS+VQDYFNE VKKMVVDSPRT+HEVT+YLQ+IAPDLCDRVELYDK++PLFD+F
Sbjct: 603 RAMGQTLSVVQDYFNENVKKMVVDSPRTFHEVTNYLQEIAPDLCDRVELYDKKVPLFDEF 662
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
NIE EI+N+LSKRVPL NGGSL+IEQTEALVSIDVNGGHGM GHG+S+++AILDVNL+AA
Sbjct: 663 NIEGEIDNILSKRVPLANGGSLIIEQTEALVSIDVNGGHGMLGHGNSQQQAILDVNLSAA 722
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
KQIARELRLRDIGGIIVVDFIDM D++NKR VYEEVKKA+ERDRSMVKVSELSRHGLMEI
Sbjct: 723 KQIARELRLRDIGGIIVVDFIDMTDEANKRFVYEEVKKAIERDRSMVKVSELSRHGLMEI 782
Query: 594 TRKR----------------------------------------AMMEQKADPENPKSWP 613
TRKR A M+QKADPE PKSWP
Sbjct: 783 TRKRVRPSVTFMVSEPCACCHATGRVEALETSFSKIEQQICRLLATMDQKADPEKPKSWP 842
Query: 614 RFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKASENQ 673
+FILRVDH MC YLTSGK+TRLA LSSSLK WILLKVARGF RG+ EV +TDDK +NQ
Sbjct: 843 KFILRVDHRMCEYLTSGKKTRLATLSSSLKVWILLKVARGFIRGSLEVKLFTDDKVEKNQ 902
Query: 674 HQVAISLLRSAEARANKSGKKVTLVPIKKLKS 705
H+VAIS+LRS+E R K G+ VTLV +KK K+
Sbjct: 903 HKVAISMLRSSETRTKKPGQNVTLVQVKKSKA 934
>gi|449470204|ref|XP_004152808.1| PREDICTED: uncharacterized protein LOC101204095 [Cucumis sativus]
Length = 992
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/751 (64%), Positives = 570/751 (75%), Gaps = 57/751 (7%)
Query: 6 RDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLPEKG 65
R QP+EEPWL S ++ ++PD+ + + K+EA +L++ + +D +LLP G
Sbjct: 251 RHQPVEEPWLPLS---FYLPKNVLEPDLLKNDVSIKEEATVLETRDPLLEDAANLLPTSG 307
Query: 66 SLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVP 125
+ + +ST+ILINSSICTMQRIAVLE+ KLVELLLEPVKSNVQCDSVYLGVV+KLVP
Sbjct: 308 ADTMLKDPISTIILINSSICTMQRIAVLEEGKLVELLLEPVKSNVQCDSVYLGVVSKLVP 367
Query: 126 NMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVN-----GSASAALEEHAVTY 180
+MGGAFVNIGNSRPSLMDIK REPFIFPPF R KQ +N G ++ E
Sbjct: 368 HMGGAFVNIGNSRPSLMDIKQNREPFIFPPFCQRVNKQVINDCSIQGQLTSLGESILSIP 427
Query: 181 DNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEAD- 239
ND + D+ ++ V +H D+E DG FDV EV +NVNGSI+DD
Sbjct: 428 KNDGVA----DIEIQNTSMLSVLDDHEDNEVEDG--FDVLEVRENVNGSIVDDDGDLDAD 481
Query: 240 FEDFLEGD-HHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKH-TPGEKTWLQVQKGTKV 297
FED ++ HHL+G ++ + + + DS S Q KDSK E WLQV+KGTK+
Sbjct: 482 FEDCIDDKAHHLEGHASISYSATASYSSDSQLSFLQYGKDSKQIVTDENKWLQVRKGTKI 541
Query: 298 IVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPE 357
IVQVVKEGLGTK P LTAYP+LRSRFWIL+T CDRIG+S+KI+GVERTRL+VIAKTLQP+
Sbjct: 542 IVQVVKEGLGTKSPMLTAYPRLRSRFWILLTRCDRIGISKKISGVERTRLRVIAKTLQPQ 601
Query: 358 GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMG 417
GFGLT+RTVAAGHSLEELQKDL+GL+STWK I E+AKSAALAADEGVEGAVP++LHRAMG
Sbjct: 602 GFGLTVRTVAAGHSLEELQKDLDGLISTWKTITENAKSAALAADEGVEGAVPVILHRAMG 661
Query: 418 QTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEE 477
QTLS+VQDYFN+KVK+MVVDSPRTYHEVT+YLQ+IAPDLCDRVEL+ RIPLFDKFNIEE
Sbjct: 662 QTLSVVQDYFNDKVKRMVVDSPRTYHEVTNYLQEIAPDLCDRVELFHGRIPLFDKFNIEE 721
Query: 478 EINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIA 537
EIN+++SKRVPL NGGSL+IEQTEALVSIDVNGGHG+FG SS+E AIL+VNLAAA+QIA
Sbjct: 722 EINSIISKRVPLVNGGSLIIEQTEALVSIDVNGGHGVFGQASSQENAILEVNLAAARQIA 781
Query: 538 RELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
RELRLRDIGGIIVVDFIDM D+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKR
Sbjct: 782 RELRLRDIGGIIVVDFIDMEDESNKRLVYEEVKKAVERDRSIVKVSELSRHGLMEITRKR 841
Query: 598 ----------------------------------------AMMEQKADPENPKSWPRFIL 617
A ++QK DP+NPKSWP+F+L
Sbjct: 842 VRPSVTFMISEPCACCHATGRVEALETSFSKIEQEICRQLATLKQKPDPDNPKSWPKFVL 901
Query: 618 RVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKASENQHQVA 677
RVDHHMC YLTSGKRTRLAVLSSSLK WI+LKVARGFTRG+FEV + DDK S +++Q
Sbjct: 902 RVDHHMCEYLTSGKRTRLAVLSSSLKVWIILKVARGFTRGSFEVKYFADDKLSRSENQAP 961
Query: 678 ISLLRSAEARANKSGKKVTLVPIKKLKSGRK 708
ISLL+ E R+N SGKKVTL P+KK K R+
Sbjct: 962 ISLLQPLEGRSNNSGKKVTLFPVKKWKGTRR 992
>gi|449477847|ref|XP_004155141.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101228180, partial [Cucumis sativus]
Length = 926
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/751 (64%), Positives = 568/751 (75%), Gaps = 57/751 (7%)
Query: 6 RDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLPEKG 65
R QP+EEPWL S ++ ++PD+ + + K+EA +L++ + +D +LLP G
Sbjct: 185 RHQPVEEPWLPLS---FYLPKNVLEPDLLKNDVSIKEEATVLETRDPLLEDAANLLPTSG 241
Query: 66 SLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVP 125
+ + +ST+ILINSSICTMQRIAVLE+ KLVELLLEPVKSNVQCDSVYLGVV+KLVP
Sbjct: 242 ADTMLKDPISTIILINSSICTMQRIAVLEEGKLVELLLEPVKSNVQCDSVYLGVVSKLVP 301
Query: 126 NMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVN-----GSASAALEEHAVTY 180
+MGGAFVNIGNSRPSLMDIK REPFIFPPF R KQ +N G ++ E
Sbjct: 302 HMGGAFVNIGNSRPSLMDIKQNREPFIFPPFCQRVNKQVINDCSIQGQLTSLGESILSIP 361
Query: 181 DNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEAD- 239
ND + D+ ++ V +H D+E DG FDV EV +NVNGSI+DD
Sbjct: 362 KNDGVA----DIEIQNTSMLSVLDDHEDNEVEDG--FDVLEVRENVNGSIVDDDGDLDAD 415
Query: 240 FEDFLEGD-HHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKH-TPGEKTWLQVQKGTKV 297
FED ++ HHL+G ++ + + + DS S Q KDSK E WLQV+KGTK+
Sbjct: 416 FEDCIDDKAHHLEGHASISYSATASYSSDSQLSFLQYGKDSKQIVTDENKWLQVRKGTKI 475
Query: 298 IVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPE 357
IVQVVKEGLGTK P LTAYP+LRSRFWIL+T CDRIG+S+KI+GVERTRL+VIAKTLQP+
Sbjct: 476 IVQVVKEGLGTKSPMLTAYPRLRSRFWILLTRCDRIGISKKISGVERTRLRVIAKTLQPQ 535
Query: 358 GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMG 417
GFGLT+RTVAAGHSLEELQKDL+GL+STWK I E+AKSAALAADEGVEGAVP++LHRAMG
Sbjct: 536 GFGLTVRTVAAGHSLEELQKDLDGLISTWKTITENAKSAALAADEGVEGAVPVILHRAMG 595
Query: 418 QTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEE 477
QTLS+VQDYFN+KVK+MVVDSPRTYHEVT+YLQ+IAPDLCDRVEL+ RIPLFDKFN EE
Sbjct: 596 QTLSVVQDYFNDKVKRMVVDSPRTYHEVTNYLQEIAPDLCDRVELFHGRIPLFDKFNTEE 655
Query: 478 EINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIA 537
EIN+++SKRVPL NGGSL+IEQTEALVSIDVNGGHG+FG SS+E AIL+ NLAAA+QIA
Sbjct: 656 EINSIISKRVPLVNGGSLIIEQTEALVSIDVNGGHGVFGQASSQENAILEXNLAAARQIA 715
Query: 538 RELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
RELRLRDIGGIIVVDFIDM D+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKR
Sbjct: 716 RELRLRDIGGIIVVDFIDMEDESNKRLVYEEVKKAVERDRSIVKVSELSRHGLMEITRKR 775
Query: 598 ----------------------------------------AMMEQKADPENPKSWPRFIL 617
A ++QK DP+NPKSWP+F+L
Sbjct: 776 VRPSVTFMISEPCACCHATGRVEALETSFSKIEQEICRQLATLKQKPDPDNPKSWPKFVL 835
Query: 618 RVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKASENQHQVA 677
RVDHHMC YLTSGKRTRLAVLSSSLK WI+LKVARGFTRG+FEV + DDK S +++Q
Sbjct: 836 RVDHHMCEYLTSGKRTRLAVLSSSLKVWIILKVARGFTRGSFEVKYFADDKLSRSENQAP 895
Query: 678 ISLLRSAEARANKSGKKVTLVPIKKLKSGRK 708
ISLL+ E R+N SGKKVTL P+KK K R+
Sbjct: 896 ISLLQPLEGRSNNSGKKVTLFPVKKWKGTRR 926
>gi|357490525|ref|XP_003615550.1| Ribonuclease E [Medicago truncatula]
gi|355516885|gb|AES98508.1| Ribonuclease E [Medicago truncatula]
Length = 1009
Score = 910 bits (2351), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/777 (63%), Positives = 572/777 (73%), Gaps = 96/777 (12%)
Query: 2 ALSERDQPIEEPWLFQSSPILLAYE----------DTVKPD---------MPEKSNNE-- 40
LSE QP+EEPWL S +++ + D VK +PE+S+N
Sbjct: 257 VLSENYQPVEEPWLLHSLRSVISEDKTESNESKTNDIVKEQVKLVDSEELLPEESSNAIL 316
Query: 41 KD--EAMILDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKL 98
KD +IL + + K D+E LLPE+ S + VST+ILINSSICTMQRIAVLEDEKL
Sbjct: 317 KDPVSTIILINSSMKSVDSEELLPEESSNTILKDPVSTIILINSSICTMQRIAVLEDEKL 376
Query: 99 VELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRC 158
VELLLEPVK+NVQ DSVY+G +TKLVP+MGGA V+IGNSRPSLMDIK Y+EPFIFPPFR
Sbjct: 377 VELLLEPVKTNVQSDSVYVGEITKLVPSMGGALVDIGNSRPSLMDIKPYKEPFIFPPFRR 436
Query: 159 RTKKQEVNGSASAALEEHAVTYDNDSTSHNTE---DVAEADSQDDLVQFEHNDDEEHDGD 215
RTKKQE+ + ND S T+ + + S+DD ++ HND +EH+ D
Sbjct: 437 RTKKQEI-----------VLKGKNDHMSRATDIPGGIRDIHSEDDCLKSVHNDYDEHETD 485
Query: 216 D-FDVSEVLK-NVNGSIIDDGEPEADFEDFLEG-DHHLDGESNGFFPSKSEVPDDSHTSH 272
D F +SEVLK NVNGS++DD E EADFED +EG D H +G+ N S S + S H
Sbjct: 486 DDFCLSEVLKENVNGSVVDD-EVEADFEDDVEGADVHTEGKMNN--GSLSLGMNGSINFH 542
Query: 273 PQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDR 332
TKD+K GE W+QV+ GTK++VQVVKEGLGTKGPTLTA+P LRSRFW+L T CD+
Sbjct: 543 ILPTKDTKREMGENKWIQVRSGTKIVVQVVKEGLGTKGPTLTAFPILRSRFWVLTTRCDK 602
Query: 333 IGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEH 392
IGVS+KI+G ERTRLKVIAKTLQPEGFGLT+RTVAAGHS EELQKDLEGLLSTWKNIME+
Sbjct: 603 IGVSKKISGAERTRLKVIAKTLQPEGFGLTVRTVAAGHSFEELQKDLEGLLSTWKNIMEN 662
Query: 393 AKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKV---KKMVVDSPRTYHEVTSYL 449
AKS+ALAADE VEGAVP +LHRAMGQTLS+VQDYFNE V KKMVVDSPRT+HEVT+YL
Sbjct: 663 AKSSALAADERVEGAVPAILHRAMGQTLSVVQDYFNENVGSVKKMVVDSPRTFHEVTNYL 722
Query: 450 QDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVN 509
QDIAPDLCDRVELY+K++PLFD++NIE E++N+LSKRVPL NGGSL+IEQTEALVSIDVN
Sbjct: 723 QDIAPDLCDRVELYNKKVPLFDEYNIEGELDNILSKRVPLANGGSLIIEQTEALVSIDVN 782
Query: 510 GGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEV 569
GGHGM H +SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDM D++NKRLVYEEV
Sbjct: 783 GGHGMLDHDTSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMTDEANKRLVYEEV 842
Query: 570 KKAVERDRSMVKVSELSRHGLMEITRKR-------------------------------- 597
KKA+ERDRS+VKVSELSRHGLMEITRKR
Sbjct: 843 KKAIERDRSVVKVSELSRHGLMEITRKRVRPSVTFMVSEPCDCCHATGRVEALETSFFKI 902
Query: 598 --------AMMEQKADPENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLK 649
A M K +P+ PKSWP+FILRVDHHMC YLTSGK+T+L +LSSSLK WILLK
Sbjct: 903 EQQICRILATMNHKGEPQKPKSWPKFILRVDHHMCTYLTSGKKTKLGILSSSLKVWILLK 962
Query: 650 VARGFTRGAFEVIPYTDDKASENQHQVAISLLRSAEARANKSGKKVTLVPIKKLKSG 706
V+RGFTRG FE+ PYTDDK NQHQVA+S K+ K T V + K K+G
Sbjct: 963 VSRGFTRGTFEIKPYTDDKVGRNQHQVAVS----------KAKPKSTFVRVIKSKAG 1009
>gi|297831502|ref|XP_002883633.1| glycoside hydrolase starch-binding domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297329473|gb|EFH59892.1| glycoside hydrolase starch-binding domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 991
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/753 (62%), Positives = 564/753 (74%), Gaps = 67/753 (8%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPE--KSNNEKDEAMILDSDNQKFQDTESL 60
S+ QPIEEPWL Q S I L + ++ D + +S +E + +++ + Q Q TE+L
Sbjct: 255 FSDNYQPIEEPWLIQDS-ITLQHARNMQTDSEQDVESCDENENSLL--TVEQNHQLTETL 311
Query: 61 LPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
LP+ G + +ST ILINSSICT+QRIAVLE EKLVELLLEPVK+NVQCDSVYLGV+
Sbjct: 312 LPDGGFF--QPESISTTILINSSICTVQRIAVLEGEKLVELLLEPVKTNVQCDSVYLGVI 369
Query: 121 TKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTY 180
TK VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +GS ++ + +
Sbjct: 370 TKFVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSINDIPAPH 429
Query: 181 DNDSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPE 237
+ + S++ E + + DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 430 EIEHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDALVGLVNGTVVNHGAVE 488
Query: 238 ADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPG-EKTWLQVQKGTK 296
G NG P + E DS S+P +K SK P + W+QV+KGTK
Sbjct: 489 V-------------GSENGLIPLEREHSVDSLVSNPSVSKTSKAMPSKDNKWIQVRKGTK 535
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQP 356
+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP
Sbjct: 536 IIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQP 595
Query: 357 EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAM 416
+GFGLT+RTVAAGHSLEELQKDLEGLL TWKNI + AKS+ALAADEGVEGA+P LLHRAM
Sbjct: 596 QGFGLTVRTVAAGHSLEELQKDLEGLLLTWKNITDEAKSSALAADEGVEGAIPALLHRAM 655
Query: 417 GQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIE 476
GQTLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD ++IE
Sbjct: 656 GQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYDIE 715
Query: 477 EEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQI 536
EEI +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAA +QI
Sbjct: 716 EEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAGRQI 775
Query: 537 ARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRK 596
ARE+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRK
Sbjct: 776 AREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRK 835
Query: 597 R----------------------------------------AMMEQKADPENPKSWPRFI 616
R A ME++ D ENPKSWPRFI
Sbjct: 836 RVRPSVTFMISEPCSCCHATGRVEALETSFSKIEQEICRQLAKMEKRGDLENPKSWPRFI 895
Query: 617 LRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKA-SENQHQ 675
LRVD HM ++LT+GKRTRLA+LSSSLK WILLKVAR FTRG FEV P+ D+K +E QHQ
Sbjct: 896 LRVDSHMSSFLTTGKRTRLAILSSSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQ 955
Query: 676 VAISLLRSAEARANKSG-KKVTLVPIKKLKSGR 707
VAISLL+ A+A A+ SG KK+TL+P K+ SG+
Sbjct: 956 VAISLLKKADAIADSSGKKKLTLIPKKEKTSGK 988
>gi|27368501|emb|CAD48421.1| putative endoribonuclease E [Arabidopsis thaliana]
Length = 818
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/752 (63%), Positives = 560/752 (74%), Gaps = 63/752 (8%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
S+ QPIEEPWL Q S I L +E ++ D + + D L++D Q Q TE+LLP
Sbjct: 81 FSDNYQPIEEPWLIQES-ITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTETLLP 139
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPVK+NVQCDSVYLGV+TK
Sbjct: 140 DGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITK 197
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +GS ++ + ++
Sbjct: 198 FVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEI 257
Query: 183 DSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPEAD 239
+ S++ E + + DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 258 EHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLAGLVNGTVVNHGAVEV- 315
Query: 240 FEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HTPGEKTWLQVQKGTKVI 298
G NG P + DS S+ K SK + + W+QV+KGTK+I
Sbjct: 316 ------------GSENGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKII 363
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP+G
Sbjct: 364 VQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQPQG 423
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
FGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADEGVEGA+P LLHRAMGQ
Sbjct: 424 FGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQ 483
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
TLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD + IEEE
Sbjct: 484 TLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEE 543
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
I +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAAA+QIAR
Sbjct: 544 IEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR 603
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR- 597
E+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKR
Sbjct: 604 EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRV 663
Query: 598 ---------------------------------------AMMEQKADPENPKSWPRFILR 618
A ME++ D ENPKSWPRFILR
Sbjct: 664 RPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILR 723
Query: 619 VDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKA-SENQHQVA 677
VD HM ++LT+GKRTRLA+LSSSLK WILLKVAR FTRG FEV P+ D+K +E QHQVA
Sbjct: 724 VDSHMSSFLTTGKRTRLAILSSSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVA 783
Query: 678 ISLLRSAEARANKSG-KKVTLVPIKKLKSGRK 708
ISLL+ A+A A+ SG KK+TL+PIKK K+ K
Sbjct: 784 ISLLKKADAIADSSGKKKLTLIPIKKEKTSGK 815
>gi|30678104|ref|NP_850988.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|330250722|gb|AEC05816.1| RNAse E/G-like protein [Arabidopsis thaliana]
Length = 871
Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/752 (63%), Positives = 560/752 (74%), Gaps = 63/752 (8%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
S+ QPIEEPWL Q S I L +E ++ D + + D L++D Q Q TE+LLP
Sbjct: 134 FSDNYQPIEEPWLIQES-ITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTETLLP 192
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPVK+NVQCDSVYLGV+TK
Sbjct: 193 DGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITK 250
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +GS ++ + ++
Sbjct: 251 FVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEI 310
Query: 183 DSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPEAD 239
+ S++ E + + DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 311 EHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLAGLVNGTVVNHGAVEV- 368
Query: 240 FEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HTPGEKTWLQVQKGTKVI 298
G NG P + DS S+ K SK + + W+QV+KGTK+I
Sbjct: 369 ------------GSENGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKII 416
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP+G
Sbjct: 417 VQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQPQG 476
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
FGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADEGVEGA+P LLHRAMGQ
Sbjct: 477 FGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQ 536
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
TLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD + IEEE
Sbjct: 537 TLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEE 596
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
I +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAAA+QIAR
Sbjct: 597 IEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR 656
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR- 597
E+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKR
Sbjct: 657 EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRV 716
Query: 598 ---------------------------------------AMMEQKADPENPKSWPRFILR 618
A ME++ D ENPKSWPRFILR
Sbjct: 717 RPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILR 776
Query: 619 VDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKA-SENQHQVA 677
VD HM ++LT+GKRTRLA+LSSSLK WILLKVAR FTRG FEV P+ D+K +E QHQVA
Sbjct: 777 VDSHMSSFLTTGKRTRLAILSSSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVA 836
Query: 678 ISLLRSAEARANKSG-KKVTLVPIKKLKSGRK 708
ISLL+ A+A A+ SG KK+TL+PIKK K+ K
Sbjct: 837 ISLLKKADAIADSSGKKKLTLIPIKKEKTSGK 868
>gi|30678102|ref|NP_850987.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|25991183|gb|AAN76770.1|AF450479_1 endoribonuclease [Arabidopsis thaliana]
gi|330250719|gb|AEC05813.1| RNAse E/G-like protein [Arabidopsis thaliana]
Length = 996
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/752 (63%), Positives = 560/752 (74%), Gaps = 63/752 (8%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
S+ QPIEEPWL Q S I L +E ++ D + + D L++D Q Q TE+LLP
Sbjct: 259 FSDNYQPIEEPWLIQES-ITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTETLLP 317
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPVK+NVQCDSVYLGV+TK
Sbjct: 318 DGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITK 375
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +GS ++ + ++
Sbjct: 376 FVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEI 435
Query: 183 DSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPEAD 239
+ S++ E + + DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 436 EHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLAGLVNGTVVNHGAVEV- 493
Query: 240 FEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HTPGEKTWLQVQKGTKVI 298
G NG P + DS S+ K SK + + W+QV+KGTK+I
Sbjct: 494 ------------GSENGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKII 541
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP+G
Sbjct: 542 VQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQPQG 601
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
FGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADEGVEGA+P LLHRAMGQ
Sbjct: 602 FGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQ 661
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
TLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD + IEEE
Sbjct: 662 TLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEE 721
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
I +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAAA+QIAR
Sbjct: 722 IEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR 781
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR- 597
E+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKR
Sbjct: 782 EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRV 841
Query: 598 ---------------------------------------AMMEQKADPENPKSWPRFILR 618
A ME++ D ENPKSWPRFILR
Sbjct: 842 RPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILR 901
Query: 619 VDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKA-SENQHQVA 677
VD HM ++LT+GKRTRLA+LSSSLK WILLKVAR FTRG FEV P+ D+K +E QHQVA
Sbjct: 902 VDSHMSSFLTTGKRTRLAILSSSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVA 961
Query: 678 ISLLRSAEARANKSG-KKVTLVPIKKLKSGRK 708
ISLL+ A+A A+ SG KK+TL+PIKK K+ K
Sbjct: 962 ISLLKKADAIADSSGKKKLTLIPIKKEKTSGK 993
>gi|334184138|ref|NP_001189510.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|330250723|gb|AEC05817.1| RNAse E/G-like protein [Arabidopsis thaliana]
Length = 1001
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/752 (63%), Positives = 560/752 (74%), Gaps = 63/752 (8%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
S+ QPIEEPWL Q S I L +E ++ D + + D L++D Q Q TE+LLP
Sbjct: 264 FSDNYQPIEEPWLIQES-ITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTETLLP 322
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPVK+NVQCDSVYLGV+TK
Sbjct: 323 DGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITK 380
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +GS ++ + ++
Sbjct: 381 FVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEI 440
Query: 183 DSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPEAD 239
+ S++ E + + DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 441 EHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLAGLVNGTVVNHGAVEV- 498
Query: 240 FEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HTPGEKTWLQVQKGTKVI 298
G NG P + DS S+ K SK + + W+QV+KGTK+I
Sbjct: 499 ------------GSENGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKII 546
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP+G
Sbjct: 547 VQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQPQG 606
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
FGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADEGVEGA+P LLHRAMGQ
Sbjct: 607 FGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQ 666
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
TLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD + IEEE
Sbjct: 667 TLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEE 726
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
I +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAAA+QIAR
Sbjct: 727 IEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR 786
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR- 597
E+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKR
Sbjct: 787 EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRV 846
Query: 598 ---------------------------------------AMMEQKADPENPKSWPRFILR 618
A ME++ D ENPKSWPRFILR
Sbjct: 847 RPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILR 906
Query: 619 VDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKA-SENQHQVA 677
VD HM ++LT+GKRTRLA+LSSSLK WILLKVAR FTRG FEV P+ D+K +E QHQVA
Sbjct: 907 VDSHMSSFLTTGKRTRLAILSSSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVA 966
Query: 678 ISLLRSAEARANKSG-KKVTLVPIKKLKSGRK 708
ISLL+ A+A A+ SG KK+TL+PIKK K+ K
Sbjct: 967 ISLLKKADAIADSSGKKKLTLIPIKKEKTSGK 998
>gi|22325461|ref|NP_178508.2| RNAse E/G-like protein [Arabidopsis thaliana]
gi|20260628|gb|AAM13212.1| putative ribonuclease E [Arabidopsis thaliana]
gi|31711752|gb|AAP68232.1| At2g04270 [Arabidopsis thaliana]
gi|330250720|gb|AEC05814.1| RNAse E/G-like protein [Arabidopsis thaliana]
Length = 713
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/708 (64%), Positives = 538/708 (75%), Gaps = 62/708 (8%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPV 106
L++D Q Q TE+LLP+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPV
Sbjct: 19 LNTDEQNHQLTETLLPDGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPV 76
Query: 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVN 166
K+NVQCDSVYLGV+TK VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +
Sbjct: 77 KTNVQCDSVYLGVITKFVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAAD 136
Query: 167 GSASAALEEHAVTYDNDSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLK 224
GS ++ + ++ + S++ E + + DS D F +DDE + D++ VS+ L
Sbjct: 137 GSPILSMNDIPAPHEIEHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLA 195
Query: 225 N-VNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HT 282
VNG++++ G E G NG P + DS S+ K SK +
Sbjct: 196 GLVNGTVVNHGAVEV-------------GSENGHIPMERGHSADSLDSNASVAKASKVMS 242
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV 342
+ W+QV+KGTK+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GV
Sbjct: 243 SKDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGV 302
Query: 343 ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADE 402
ERTRLKVIAKTLQP+GFGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADE
Sbjct: 303 ERTRLKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADE 362
Query: 403 GVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVEL 462
GVEGA+P LLHRAMGQTLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL
Sbjct: 363 GVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVEL 422
Query: 463 YDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKE 522
+DK IPLFD + IEEEI +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+E
Sbjct: 423 HDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQE 482
Query: 523 KAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKV 582
KAIL+VNLAAA+QIARE+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKV
Sbjct: 483 KAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKV 542
Query: 583 SELSRHGLMEITRKR----------------------------------------AMMEQ 602
SELSRHGLMEITRKR A ME+
Sbjct: 543 SELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLAKMEK 602
Query: 603 KADPENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVI 662
+ D ENPKSWPRFILRVD HM ++LT+GKRTRLA+LSSSLK WILLKVAR FTRG FEV
Sbjct: 603 RGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILSSSLKVWILLKVARHFTRGTFEVK 662
Query: 663 PYTDDKA-SENQHQVAISLLRSAEARANKSG-KKVTLVPIKKLKSGRK 708
P+ D+K +E QHQVAISLL+ A+A A+ SG KK+TL+PIKK K+ K
Sbjct: 663 PFMDEKTVNERQHQVAISLLKKADAIADSSGKKKLTLIPIKKEKTSGK 710
>gi|350535989|ref|NP_001234480.1| ribonuclease E [Solanum lycopersicum]
gi|166203325|gb|ABY84671.1| ribonuclease E [Solanum lycopersicum]
Length = 935
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/758 (59%), Positives = 548/758 (72%), Gaps = 75/758 (9%)
Query: 10 IEEPWLFQSSPILLAYEDTVKPD--MPEKSNNEKDEAMILDSD-----------NQKFQD 56
+EEPWL Q+ + +++ + PD E+S+N KDEA SD NQ Q
Sbjct: 193 VEEPWLLQACMLSPSFDAEMAPDDFEVEQSDN-KDEAQPPFSDQLEQLAQPSSSNQHEQI 251
Query: 57 TESLLP-EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSV 115
E LL ++ ISK++ +T+ILINSS+CT+QRIAVLE+EKLVELLLEPVK+NVQCDSV
Sbjct: 252 PEKLLDVDQCDAISKEDSFTTIILINSSVCTVQRIAVLENEKLVELLLEPVKNNVQCDSV 311
Query: 116 YLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEE 175
YLGVVTKL P+MGGAFVNIG SRPS MDIK REPF+FPPF ++++ +NG++ LEE
Sbjct: 312 YLGVVTKLAPHMGGAFVNIGTSRPSFMDIKPNREPFVFPPFCHDSREKVINGASVDMLEE 371
Query: 176 HAVTYDNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHD---GDDFDVSEVL-KNVNGSII 231
+ N ST + D+ + E+ D E D GD D+ EVL +N NGS+
Sbjct: 372 NLGLPRNKSTLEEVDADEIDDADIEDESMEYMDSEFGDHESGDACDILEVLAENCNGSVT 431
Query: 232 DDGEPEADFEDFLEGDHHLDGESNGF-FPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ 290
+ G E E + E ES+G + ++ + + +D E W+Q
Sbjct: 432 EHG-LETHSEKYPE-------ESSGIGYRGQNPTIERAMNGKRISQRD------ESKWVQ 477
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
V+KGTK+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+ + IG+S+KI GVERTRL+VI
Sbjct: 478 VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLVPRGNTIGISKKIAGVERTRLRVI 537
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
AKTLQP+G+GLT+RTVAAGHSL ELQKDLEGLLSTWK+I+EHAKSAALAADEGV+GAVP+
Sbjct: 538 AKTLQPQGYGLTVRTVAAGHSLNELQKDLEGLLSTWKSIIEHAKSAALAADEGVDGAVPV 597
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
+LH+AMGQTLS+VQDYF++KV +VVDSPRTYHEVT+YLQ++AP+LC+RVEL+ R PLF
Sbjct: 598 MLHQAMGQTLSVVQDYFSDKVNSLVVDSPRTYHEVTNYLQEMAPNLCERVELHGTRTPLF 657
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
D++NIEEEINN+LSKRVPL NGG LVIEQTEALVSIDVNGGH + G G+S+E AIL+VNL
Sbjct: 658 DEYNIEEEINNILSKRVPLDNGGYLVIEQTEALVSIDVNGGHCVLGQGTSQEMAILNVNL 717
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AAA+QIARE+RLRDIGGIIVVDFIDM DDSNKRLVYEEVKKAVERDRS VKVSELSRHGL
Sbjct: 718 AAARQIAREIRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVERDRSTVKVSELSRHGL 777
Query: 591 MEITRKR----------------------------------------AMMEQKADPENPK 610
MEITRKR + + KADPENPK
Sbjct: 778 MEITRKRVRPSVTFMISEPCMCCHGTGRVEALATAYSKIEREICRLLSTTDLKADPENPK 837
Query: 611 SWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKAS 670
SWPRFILRVD +M NYLTSGKRTRLA+LSSSLK W+LLKVARGFT+G FE+ P T DK
Sbjct: 838 SWPRFILRVDQYMSNYLTSGKRTRLAILSSSLKVWLLLKVARGFTKGTFELKPLTGDKEY 897
Query: 671 E-NQHQVAISLLRSAEARANKSGKKVTLVPIKKLKSGR 707
+ ++ + +IS+LR E + KKVT+ PIKK SG+
Sbjct: 898 KGDERETSISVLRPTEGGFHPPRKKVTIFPIKKWSSGK 935
>gi|296085058|emb|CBI28473.3| unnamed protein product [Vitis vinifera]
Length = 934
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/551 (70%), Positives = 432/551 (78%), Gaps = 62/551 (11%)
Query: 202 VQFEHNDDEEHD-GDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGES-NGFFP 259
+QF H+D EEH+ DDFDV + K++NGSI+D D E+ N F P
Sbjct: 402 IQFAHDDFEEHEVEDDFDVL-IKKDLNGSIVDH-----------------DSETINNFLP 443
Query: 260 SKSEVP-DDSHTSHPQGTKDSKHTPG-EKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYP 317
+ E DS KDS+ E W QVQKGTK+IVQVVKEGLGTKGPTLTAYP
Sbjct: 444 VELEKGFHDSQLPPLLEMKDSRQAYTVENKWAQVQKGTKIIVQVVKEGLGTKGPTLTAYP 503
Query: 318 KLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQK 377
KLRSRFW+L+T C+RIGVS+KI+GVERTRL+VIAKTLQP+GFGLT+RTVAAGH+LEELQK
Sbjct: 504 KLRSRFWVLLTCCNRIGVSKKISGVERTRLRVIAKTLQPKGFGLTVRTVAAGHTLEELQK 563
Query: 378 DLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVD 437
DLEGLLSTWKNI+EHAKSAALAADEGVEGA+P++LHRAMGQTLS+VQDYFNEKV+ MVVD
Sbjct: 564 DLEGLLSTWKNIVEHAKSAALAADEGVEGAIPVILHRAMGQTLSVVQDYFNEKVESMVVD 623
Query: 438 SPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVI 497
SPRTYHEVT+YLQ+IAPDLCDRVELY+KR+PLFD+FNIEEEINN+LSKRVPLPNGGSLVI
Sbjct: 624 SPRTYHEVTNYLQEIAPDLCDRVELYNKRVPLFDEFNIEEEINNILSKRVPLPNGGSLVI 683
Query: 498 EQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMA 557
EQTEALVSIDVNGGHGM G+G+S+EKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDM
Sbjct: 684 EQTEALVSIDVNGGHGMLGNGTSQEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDML 743
Query: 558 DDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR-------------------- 597
DDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR
Sbjct: 744 DDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHGTG 803
Query: 598 --------------------AMMEQKADPENPKSWPRFILRVDHHMCNYLTSGKRTRLAV 637
AM E+KADPENP SWPRFIL VD MCNYLTSGKRTRLA+
Sbjct: 804 RVEALETSFSKIEQEICRLLAMTEEKADPENPNSWPRFILMVDRFMCNYLTSGKRTRLAI 863
Query: 638 LSSSLKAWILLKVARGFTRGAFEVIPYTDDKASENQHQVAISLLRSAEARANKSGKKVTL 697
LSSSLK WILLKVARGFTRGAFEV P+TDDK + + HQ IS+LR EA + VTL
Sbjct: 864 LSSSLKVWILLKVARGFTRGAFEVKPFTDDKVNISSHQGPISMLRPTEAGTYNPRRNVTL 923
Query: 698 VPIKKLKSGRK 708
PIKK K+G K
Sbjct: 924 FPIKKWKTGGK 934
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/135 (66%), Positives = 106/135 (78%), Gaps = 3/135 (2%)
Query: 2 ALSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLL 61
+S RDQP+EEPWL QSS L+A ++ + +M + + + E L +Q + TE LL
Sbjct: 269 TVSMRDQPVEEPWLLQSS--LIASKEEMVSNMSKNIDAAQVEVSHLKLLDQSYLHTEKLL 326
Query: 62 PEKGS-LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
PE+G+ LISKD+ VSTVILINSSICTMQRIAVLED LVELLLEPVKSNVQCDSVYLGVV
Sbjct: 327 PEEGTNLISKDDSVSTVILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVV 386
Query: 121 TKLVPNMGGAFVNIG 135
TKLVP+MGGAFVNIG
Sbjct: 387 TKLVPHMGGAFVNIG 401
>gi|115475892|ref|NP_001061542.1| Os08g0323600 [Oryza sativa Japonica Group]
gi|38637407|dbj|BAD03665.1| putative endoribonuclease E [Oryza sativa Japonica Group]
gi|113623511|dbj|BAF23456.1| Os08g0323600 [Oryza sativa Japonica Group]
gi|222640346|gb|EEE68478.1| hypothetical protein OsJ_26881 [Oryza sativa Japonica Group]
Length = 1085
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/761 (54%), Positives = 519/761 (68%), Gaps = 84/761 (11%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ E+DQP+EEPWLFQS V P K EA + +K + L
Sbjct: 351 IPEQDQPVEEPWLFQSK---------VVAKKPVVQTKGKIEAKDIIRKLRKMDKPPAPLE 401
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
E + + + S VI+INSS+CTMQRIAVLED KLVELLLEP+K+NVQCDS+YLG+VTK
Sbjct: 402 EDKATSGEPS--SRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGIVTK 459
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IG SRPSLM IK R+PF++P K+ N S Y++
Sbjct: 460 LVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFS----------DYND 509
Query: 183 DSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSE------VLKNVNGSIIDDGEP 236
DS T + + D D + E NDDE VSE L N ++I E
Sbjct: 510 DSLP--TYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEF 567
Query: 237 EA----DFEDFLEGDHHLDGESN-GFFPS-KSEVPDDSHT--SHPQGTKDSKHTPGEKTW 288
E+ D E E D H++ E N P +SEV +D T S ++S W
Sbjct: 568 ESISSYDEEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRW 627
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
QV+KGTK++VQVVKEGLG+KGPTL+ +P LRSRFWIL++ +++GVS+KITG+ERTRLK
Sbjct: 628 SQVRKGTKIMVQVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLK 687
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K L+P GF LT RTVAAGHS EELQKDL+ LLSTWK I+EHA+SAALAA+EGVEGAV
Sbjct: 688 GITKLLRPPGFTLTARTVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAV 747
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P++LHR+ GQ LS+VQD FNEKVK++VVDSPRTYHEVT+YLQ++AP+LC+RV+LY+KR P
Sbjct: 748 PVMLHRSKGQALSVVQDDFNEKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTP 807
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+FD++ IE+EI+N+L KRVPL NGGSLVIEQTEALVSIDVNGGH MFG G+S+EKAIL+V
Sbjct: 808 IFDEYKIEKEIDNILCKRVPLHNGGSLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEV 867
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AAKQIARELRLRDIGGIIVVDFIDM DD+NK+LV+EE+KKAVE+DRS V VSELS+
Sbjct: 868 NLEAAKQIARELRLRDIGGIIVVDFIDMTDDTNKKLVFEEMKKAVEKDRSTVGVSELSKL 927
Query: 589 GLMEITRKR----------------------------------------AMMEQKADPEN 608
GLMEITRKR A K+DPE
Sbjct: 928 GLMEITRKRVRPSVTFMISEPCPCCHGIGRVEALDTSFSKIEREICRRLAASGHKSDPEK 987
Query: 609 PKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDK 668
PKSWPRF+LRVDH MC YLTSGK+T+L +LSSSLK WILLK+ARGF RGAFE++PY+D+K
Sbjct: 988 PKSWPRFVLRVDHEMCTYLTSGKKTKLGLLSSSLKVWILLKIARGFARGAFELLPYSDEK 1047
Query: 669 ASENQHQVAISLLRSAEARANKSGK-KVTLVPIKKLKSGRK 708
++ + + ++E+ ++G K+++ PIKK S K
Sbjct: 1048 ETDERKE------ETSESPPKEAGSPKLSVFPIKKWMSRAK 1082
>gi|357145611|ref|XP_003573703.1| PREDICTED: uncharacterized protein LOC100832256 [Brachypodium
distachyon]
Length = 1086
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/714 (55%), Positives = 487/714 (68%), Gaps = 56/714 (7%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ E+ QP+EEPW FQS + K + K + +K M + P
Sbjct: 351 MPEQYQPVEEPWFFQSWAVAKRTGVKTKGKIEAKDSTKKYRKM-----------DKPPAP 399
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
+ S S VILINSSICTMQRIAVLED KLVELLLEP+K+ V CDS+YLG+VTK
Sbjct: 400 SEADTPSTSEHSSRVILINSSICTMQRIAVLEDGKLVELLLEPIKNTVHCDSIYLGIVTK 459
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IG SRPSLM IK R+PF++P K N S +E TYD+
Sbjct: 460 LVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQIVKDNKGGTANDSDYN--DESLPTYDD 517
Query: 183 DSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFED 242
D + E E + D HN E G DF +K ++ + + D +D
Sbjct: 518 DDDIADEEFADEENDDDSATFLAHNVTENEQGMDFVSHSKMKMIDSAEFESVSACDDEKD 577
Query: 243 FLEGDHHLDGESNGFFPS-KSEVPDDSHT--SHPQGTKDSKHTPGEKTWLQVQKGTKVIV 299
DH D ++ P +SE+ +D T S ++S W QV+KGTKV+V
Sbjct: 578 DETDDHVEDEYNDDLVPGDQSEISNDIKTLSSIQHALRESNDDTNGCRWSQVRKGTKVMV 637
Query: 300 QVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGF 359
QVVKEGLGTKGPTL+ +P LRSRFWIL++ +++GVS+KITG+ERTRLK I K L+P GF
Sbjct: 638 QVVKEGLGTKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPVGF 697
Query: 360 GLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQT 419
LT RTVAAGHS EELQKDL+ LLSTWK I EHA+SAALAA+EGVEGAVP++LHR+ GQ
Sbjct: 698 TLTARTVAAGHSWEELQKDLDRLLSTWKGITEHAQSAALAAEEGVEGAVPVMLHRSKGQA 757
Query: 420 LSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEI 479
LSIVQD FNEKVK++VVDSPRTYHEVTSYLQ++AP+LC+RV+LY+KR P+FD++ IE+EI
Sbjct: 758 LSIVQDDFNEKVKRLVVDSPRTYHEVTSYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEI 817
Query: 480 NNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARE 539
+N+L KRV L NGGSL+IEQTEALVSIDVNGGH MFG G+S+E AIL+VNL AAKQIARE
Sbjct: 818 DNILCKRVVLQNGGSLIIEQTEALVSIDVNGGHSMFGQGTSQENAILEVNLEAAKQIARE 877
Query: 540 LRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR-- 597
LRLRDIGGIIVVDFIDM D+SNKRLVYEE+KKAVE+DRS V VSELS+ GLMEITRKR
Sbjct: 878 LRLRDIGGIIVVDFIDMTDESNKRLVYEEMKKAVEKDRSTVGVSELSKLGLMEITRKRVR 937
Query: 598 --------------------------------------AMMEQKADPENPKSWPRFILRV 619
A K+DPE PKSWPRF+LRV
Sbjct: 938 PSVTFMISEPCPCCHGLGRVEALDTSFSKIEREICRRLASSGHKSDPEKPKSWPRFLLRV 997
Query: 620 DHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKASENQ 673
DH MC YLTSGK+T+L +LSSSLK W+LLK+ARGFTRGAFE++PY+D+ E++
Sbjct: 998 DHEMCTYLTSGKKTKLGLLSSSLKVWVLLKIARGFTRGAFELLPYSDEDTDEHK 1051
>gi|30678106|ref|NP_850989.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|330250721|gb|AEC05815.1| RNAse E/G-like protein [Arabidopsis thaliana]
Length = 619
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/555 (68%), Positives = 445/555 (80%), Gaps = 20/555 (3%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPV 106
L++D Q Q TE+LLP+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPV
Sbjct: 19 LNTDEQNHQLTETLLPDGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPV 76
Query: 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVN 166
K+NVQCDSVYLGV+TK VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +
Sbjct: 77 KTNVQCDSVYLGVITKFVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAAD 136
Query: 167 GSASAALEEHAVTYDNDSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLK 224
GS ++ + ++ + S++ E + + DS D F +DDE + D++ VS+ L
Sbjct: 137 GSPILSMNDIPAPHEIEHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLA 195
Query: 225 N-VNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HT 282
VNG++++ G E G NG P + DS S+ K SK +
Sbjct: 196 GLVNGTVVNHGAVEV-------------GSENGHIPMERGHSADSLDSNASVAKASKVMS 242
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV 342
+ W+QV+KGTK+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GV
Sbjct: 243 SKDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGV 302
Query: 343 ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADE 402
ERTRLKVIAKTLQP+GFGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADE
Sbjct: 303 ERTRLKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADE 362
Query: 403 GVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVEL 462
GVEGA+P LLHRAMGQTLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL
Sbjct: 363 GVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVEL 422
Query: 463 YDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKE 522
+DK IPLFD + IEEEI +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+E
Sbjct: 423 HDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQE 482
Query: 523 KAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKV 582
KAIL+VNLAAA+QIARE+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKV
Sbjct: 483 KAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKV 542
Query: 583 SELSRHGLMEITRKR 597
SELSRHGLMEITRKR
Sbjct: 543 SELSRHGLMEITRKR 557
>gi|7160671|emb|CAB76425.1| endoribonuclease E [Arabidopsis thaliana]
Length = 575
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/527 (70%), Positives = 428/527 (81%), Gaps = 18/527 (3%)
Query: 75 STVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNI 134
+T ILINSSICT+QRIAVLE KLVELLLEPVK+NVQCDSVYLGV+TK VP+MGGAFVNI
Sbjct: 1 ATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNI 60
Query: 135 GNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTE--DV 192
G++R S MDIK REPFIFPPF +KKQ +GS ++ + ++ + S++ E +
Sbjct: 61 GSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 120
Query: 193 AEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPEADFEDFLEGDHHLD 251
+ DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 121 LDIDSNDPGESFHDDDDEHEN-DEYHVSDHLAGLVNGTVVNHGAVEV------------- 166
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSK-HTPGEKTWLQVQKGTKVIVQVVKEGLGTKG 310
G NG P + DS S+ K SK + + W+QV+KGTK+IVQVVKEGLGTKG
Sbjct: 167 GSENGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKIIVQVVKEGLGTKG 226
Query: 311 PTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGH 370
PTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP+GFGLT+RTVAAGH
Sbjct: 227 PTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQPQGFGLTVRTVAAGH 286
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
SLEELQKDL+GLL TWKNI + AKSAALAADEGVEGA+P LLHRAMGQTLS+VQDYFN+K
Sbjct: 287 SLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDK 346
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
V+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD + IEEEI +LSKRVPL
Sbjct: 347 VEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLS 406
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAAA+QIARE+RLRDIGGIIV
Sbjct: 407 NGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIV 466
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
VDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKR
Sbjct: 467 VDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKR 513
>gi|218200941|gb|EEC83368.1| hypothetical protein OsI_28778 [Oryza sativa Indica Group]
Length = 1036
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 308/511 (60%), Positives = 380/511 (74%), Gaps = 62/511 (12%)
Query: 241 EDFLEGDHHLDGESNGFFPSKSEVPDDSHT--SHPQGTKDSKHTPGEKTWLQVQKGTKVI 298
ED L GD +SEV +D T S ++S W QV+KGTK++
Sbjct: 542 EDLLPGD-------------QSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIM 588
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLG+KGPTL+ +P LRSRFWIL++ +++GVS+KITG+ERTRLK I K L+P G
Sbjct: 589 VQVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPG 648
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
F LT RTVAAGHS EELQKDL+ LLSTWK I+EHA+SAALAA+EGVEGAVP++LHR+ GQ
Sbjct: 649 FTLTARTVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQ 708
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
LS+VQD FNEKVK++VVDSPRTYHEVT+YLQ++AP+LC+RV+LY+KR P+FD++ IE+E
Sbjct: 709 ALSVVQDDFNEKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKE 768
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
I+N+L KRVPL NGGSLVIEQTEALVSIDVNGGH MFG G+S+EKAIL+VNL AAKQIAR
Sbjct: 769 IDNILCKRVPLHNGGSLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEVNLEAAKQIAR 828
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR- 597
ELRLRDIGGIIVVDFIDM DD+NK+LV+EE+KKAVE+DRS V VSELS+ GLMEITRKR
Sbjct: 829 ELRLRDIGGIIVVDFIDMTDDTNKKLVFEEMKKAVEKDRSTVGVSELSKLGLMEITRKRV 888
Query: 598 ---------------------------------------AMMEQKADPENPKSWPRFILR 618
A K+DPE PKSWPRF+LR
Sbjct: 889 RPSVTFMISEPCPCCHGIGRVEALDTSFSKIEREICRRLAASGHKSDPEKPKSWPRFVLR 948
Query: 619 VDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKASENQHQVAI 678
VDH MC YLTSGK+T+L +LSSSLK WILLK+ARGF RGAFE++PY+D+K ++ + +
Sbjct: 949 VDHEMCTYLTSGKKTKLGLLSSSLKVWILLKIARGFARGAFELLPYSDEKETDERKE--- 1005
Query: 679 SLLRSAEARANKSGK-KVTLVPIKKLKSGRK 708
++E+ ++G K+++ PIKK S K
Sbjct: 1006 ---ETSESPPKEAGSPKLSVFPIKKWMSRAK 1033
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 65/107 (60%), Gaps = 11/107 (10%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ E+DQP+EEPWLFQS + KP + K K EA + +K + L
Sbjct: 351 IPEQDQPVEEPWLFQSKVV------AKKPVVQTKG---KIEAKDIIRKLRKMDKPPAPLE 401
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSN 109
E + + + S VI+INSS+CTMQRIAVLED KLVELLLEP+K+N
Sbjct: 402 EDKATSGEPS--SRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNN 446
>gi|50725997|dbj|BAD33523.1| putative endoribonuclease E [Oryza sativa Japonica Group]
Length = 898
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/549 (55%), Positives = 380/549 (69%), Gaps = 37/549 (6%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ E+DQP+EEPWLFQS V P K EA + +K + L
Sbjct: 351 IPEQDQPVEEPWLFQSK---------VVAKKPVVQTKGKIEAKDIIRKLRKMDKPPAPLE 401
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
E + + + S VI+INSS+CTMQRIAVLED KLVELLLEP+K+NVQCDS+YLG+VTK
Sbjct: 402 EDKATSGEPS--SRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGIVTK 459
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IG SRPSLM IK R+PF++P K+ N S Y++
Sbjct: 460 LVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFS----------DYND 509
Query: 183 DSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSE------VLKNVNGSIIDDGEP 236
DS T + + D D + E NDDE VSE L N ++I E
Sbjct: 510 DSLP--TYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEF 567
Query: 237 EA----DFEDFLEGDHHLDGESN-GFFPS-KSEVPDDSHT--SHPQGTKDSKHTPGEKTW 288
E+ D E E D H++ E N P +SEV +D T S ++S W
Sbjct: 568 ESISSYDEEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRW 627
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
QV+KGTK++VQVVKEGLG+KGPTL+ +P LRSRFWIL++ +++GVS+KITG+ERTRLK
Sbjct: 628 SQVRKGTKIMVQVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLK 687
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K L+P GF LT RTVAAGHS EELQKDL+ LLSTWK I+EHA+SAALAA+EGVEGAV
Sbjct: 688 GITKLLRPPGFTLTARTVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAV 747
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P++LHR+ GQ LS+VQD FNEKVK++VVDSPRTYHEVT+YLQ++AP+LC+RV+LY+KR P
Sbjct: 748 PVMLHRSKGQALSVVQDDFNEKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTP 807
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+FD++ IE+EI+N+L KRVPL NGGSLVIEQTEALVSIDVNGGH MFG G+S+EKAIL+V
Sbjct: 808 IFDEYKIEKEIDNILCKRVPLHNGGSLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEV 867
Query: 529 NLAAAKQIA 537
NL AAKQ+
Sbjct: 868 NLEAAKQVC 876
>gi|168003555|ref|XP_001754478.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694580|gb|EDQ80928.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 293/707 (41%), Positives = 422/707 (59%), Gaps = 64/707 (9%)
Query: 8 QPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDT-ESLLPEKGS 66
+P EEPWL +S E++++ + N E EA + + +K ++ L +
Sbjct: 4 KPTEEPWLLESIIATEMDEESLR-EAQSTQNQEVSEAPAIIEEPRKLSPVGDNYLRPDTA 62
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+ K+ V ILIN+S CTMQR+A+LE++K+VE +EPV + VQ ++YLG V +L+P
Sbjct: 63 DVKKEPEVEVEILINTSECTMQRMAILENKKVVEFSIEPVNTKVQVGNIYLGRVKQLLPG 122
Query: 127 MGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTS 186
M G FV+IG R +L+DI + P+ FPP C + S S + + +
Sbjct: 123 MSGVFVDIGGPRLALLDIARNQYPYTFPPV-CGSGNHLSTDSVSGG------SLQDVDLN 175
Query: 187 HNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDD---GEPEADFEDF 243
+ ED + +++ + E D+E++ +D D + + SI+ D GE E +F+D
Sbjct: 176 LSDEDANFTEEEEEEEEEEEEDEEDNKDEDEDEEPYEEGIARSIVVDRVSGEAE-NFKDS 234
Query: 244 LEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVK 303
E + S + P + P + G K SK W V++G +IVQV K
Sbjct: 235 PEEKVQVKKLSKAWEPHRQGSPITVNF----GRKFSK-------WRNVEEGMPIIVQVKK 283
Query: 304 EGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGFGLTI 363
E +G KGP LTA+P L RFW+LI + +GVS +ITG ER RLK++A+ LQPE G+T+
Sbjct: 284 ESMGKKGPRLTAFPSLAGRFWVLIPRGNSVGVSARITGPERRRLKLLAQKLQPEDLGITV 343
Query: 364 RTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIV 423
RT A GH EEL++DL L+ WK IME A +AA+A + G E AVP+LLHR MGQTL+I+
Sbjct: 344 RTEAIGHEQEELERDLTRLMDAWKEIMEKAAAAAVAVERGEEAAVPVLLHREMGQTLTII 403
Query: 424 QDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNML 483
+D F EKV ++VVDS +++ EV +YLQ++AP L +RV LY ++P+FDKFN+E +++
Sbjct: 404 RDLFTEKVSRVVVDSAQSFQEVINYLQEVAPHLMNRVVLYSGKVPIFDKFNVESDLDKFF 463
Query: 484 SKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLR 543
S+RV LPNGG LV+++TEALVSIDVNGG GM GH + +AIL+VNLAAAKQIA E+RLR
Sbjct: 464 SERVKLPNGGYLVMQETEALVSIDVNGGTGMLGHSMKQREAILNVNLAAAKQIAHEIRLR 523
Query: 544 DIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRK------- 596
DIGGIIVVDFIDM + +++LVYEE+++A++RDRS V +SE+S +GLME+TRK
Sbjct: 524 DIGGIIVVDFIDMDNHEDEKLVYEEMRRAIQRDRSKVSISEISEYGLMEMTRKRVRPSVT 583
Query: 597 ---------------------------RAMMEQKAD----PENPKSWPRFILRVDHHMCN 625
RA+ AD + +WP+ +LRV+ M
Sbjct: 584 YTIHSSCACCKGTGRVEALETTLSKIERAIRRVLADHPDVSSDASTWPQILLRVEPSMLE 643
Query: 626 YLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEV--IPYTDDKAS 670
+L S K+ R+ L SL+ WI LK+ + G FEV +P T K S
Sbjct: 644 FLKSWKKKRIIQLGHSLRVWINLKLGMELSHGQFEVTEVPRTSSKKS 690
>gi|414869992|tpg|DAA48549.1| TPA: hypothetical protein ZEAMMB73_776526 [Zea mays]
Length = 693
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 268/488 (54%), Positives = 328/488 (67%), Gaps = 32/488 (6%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ E+ QP+EEPWLFQS IL E V D K EA + +K + + L P
Sbjct: 214 MHEQYQPVEEPWLFQS--ILELNETIVLAD-------GKVEARDIIRKLRKIE--KPLTP 262
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
S + S VIL+NSS+CTMQRIAVLED KLVELLLEP+K+NVQCDS+YLGVVTK
Sbjct: 263 LDESKPTGGEPSSRVILMNSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGVVTK 322
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IG SRPSLM IK R+PF++P K + + EE+ Y+N
Sbjct: 323 LVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQV---FKNRGTDHVGDYCNEENLPAYEN 379
Query: 183 DSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFED 242
D DD+ E D+E HDG F V V N D D +
Sbjct: 380 D---------------DDMSDDEFADEEAHDGSSFPVENVTDNNVDDDEVDSISVYDVDK 424
Query: 243 FLEGDHHLDGESNGFFPS-KSEVPDDSHT--SHPQGTKDSKHTPGEKTWLQVQKGTKVIV 299
E DH D S G +SE+ +D T S ++S W QV+KGTKV+V
Sbjct: 425 DEENDHMEDEYSEGILQGYQSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMV 484
Query: 300 QVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGF 359
QVVKEGLGTKGPTL+ +P LRSRFWIL++ +++GVS+KITG+ERTRLK I K L+P GF
Sbjct: 485 QVVKEGLGTKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGF 544
Query: 360 GLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQT 419
LT RTVAAGHS EELQKDL+GLLSTWK I EHA+SAALAADEGVEGAVP++LHRA GQT
Sbjct: 545 TLTARTVAAGHSWEELQKDLDGLLSTWKGITEHAQSAALAADEGVEGAVPVMLHRAKGQT 604
Query: 420 LSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEI 479
LS+VQD FNEKVK++VVDSPRTYHEVTSYL+++AP+L RVELY+KR P+FD++NIE+EI
Sbjct: 605 LSVVQDDFNEKVKRLVVDSPRTYHEVTSYLEEVAPELYSRVELYEKRKPIFDEYNIEKEI 664
Query: 480 NNMLSKRV 487
+N+L KR
Sbjct: 665 DNILCKRC 672
>gi|4689475|gb|AAD27911.1| putative ribonuclease E [Arabidopsis thaliana]
Length = 502
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 236/311 (75%), Positives = 267/311 (85%), Gaps = 9/311 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
V+KGTK+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVI
Sbjct: 137 VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVI 196
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
AKTLQP+GFGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADEG I
Sbjct: 197 AKTLQPQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGPFQRCYI 256
Query: 411 ---LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI 467
+ H + +T+S+ + Y ++ +VT YLQD+APDLC+RVEL+DK I
Sbjct: 257 EQWVKHYQLCRTISMTRLYIQ------IISLTSISLQVTHYLQDMAPDLCNRVELHDKGI 310
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
PLFD + IEEEI +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+
Sbjct: 311 PLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILE 370
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
VNLAAA+QIARE+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSR
Sbjct: 371 VNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSR 430
Query: 588 HGLMEITRKRA 598
HGLMEITRKR
Sbjct: 431 HGLMEITRKRV 441
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/132 (63%), Positives = 101/132 (76%), Gaps = 6/132 (4%)
Query: 32 DMPEKSNNEKDEAMILDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQRIA 91
D+ +NE + L++D Q Q TE+LLP+ G S+ ++T ILINSSICT+QRIA
Sbjct: 8 DVESCDDNENN----LNTDEQNHQLTETLLPDGGFFQSES--IATTILINSSICTVQRIA 61
Query: 92 VLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPF 151
VLE KLVELLLEPVK+NVQCDSVYLGV+TK VP+MGGAFVNIG++R S MDIK REPF
Sbjct: 62 VLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSARHSFMDIKSNREPF 121
Query: 152 IFPPFRCRTKKQ 163
IFPPF +KKQ
Sbjct: 122 IFPPFCDGSKKQ 133
>gi|302774831|ref|XP_002970832.1| hypothetical protein SELMODRAFT_94320 [Selaginella moellendorffii]
gi|300161543|gb|EFJ28158.1| hypothetical protein SELMODRAFT_94320 [Selaginella moellendorffii]
Length = 516
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/524 (48%), Positives = 327/524 (62%), Gaps = 77/524 (14%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
V+ I INSS CTMQRIA++E++KLV+LLLEPV SN Q +VYLGVV +L+P M G FV
Sbjct: 5 VAVEIFINSSECTMQRIAIVENKKLVQLLLEPVNSNFQVGNVYLGVVKQLLPGMNGIFVE 64
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
IG+S RT EVN + ++ + D N
Sbjct: 65 IGSS---------------------RTALLEVN------MHQYPHVFYGDKAQGN----- 92
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
E DG L+N +G +ID E E + +D +
Sbjct: 93 -----------------EEDG--------LRNKDGIVIDVNEEEIE--------ETVD-D 118
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
NG +S D T+ T K W +V++GT ++VQV KE L KGP L
Sbjct: 119 PNGEEMEQS----DGKTNVKPATVLRKI----GAWRKVKRGTLMVVQVKKEALRQKGPQL 170
Query: 314 TAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLE 373
TA L R+W+L+ IGV+RKI G+ER+RLK +A+ LQP GFGLT+RT A G S E
Sbjct: 171 TATVALAGRYWVLVPQVSTIGVTRKINGLERSRLKQLARELQPPGFGLTVRTEAVGRSRE 230
Query: 374 ELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKK 433
EL+KDL L+ TWK+I+E A+ AA A G + VP+LL RAMGQTL V+D FN +V++
Sbjct: 231 ELEKDLARLMETWKSILERAEVAAAA---GGKDPVPVLLQRAMGQTLRTVRDLFNNEVER 287
Query: 434 MVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGG 493
VVDS +TY EVT+YLQ+IAP LCDRVELY + P+F+ FN+E EI SKRV LPNG
Sbjct: 288 FVVDSSQTYQEVTAYLQEIAPHLCDRVELYSGKEPIFEAFNLEAEIEKSSSKRVELPNGA 347
Query: 494 SLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDF 553
LV+E+TEALVSIDVNGG GM G +S+ +A+L+VNLAAA++IA ELRLRDIGGIIVVDF
Sbjct: 348 YLVLEETEALVSIDVNGGVGMLGDATSQREAVLEVNLAAARKIATELRLRDIGGIIVVDF 407
Query: 554 IDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
IDM D S++RLV+EE++KA+ERDRS V +SE+S GLME+TR R
Sbjct: 408 IDMEDPSHERLVFEEMRKAIERDRSKVVISEISEFGLMEMTRAR 451
>gi|302772292|ref|XP_002969564.1| hypothetical protein SELMODRAFT_91982 [Selaginella moellendorffii]
gi|300163040|gb|EFJ29652.1| hypothetical protein SELMODRAFT_91982 [Selaginella moellendorffii]
Length = 517
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/524 (48%), Positives = 327/524 (62%), Gaps = 77/524 (14%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
V+ I INSS CTMQRIA++E++KLV+LLLEPV SN Q +VYLGVV +L+P M G FV
Sbjct: 5 VAVEIFINSSECTMQRIAIVENKKLVQLLLEPVNSNFQVGNVYLGVVKQLLPGMNGIFVE 64
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
IG+S RT EVN + ++ + D N
Sbjct: 65 IGSS---------------------RTALLEVN------MHQYPHVFYGDKAQGN----- 92
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
E DG L+N +G +ID E E + +D +
Sbjct: 93 -----------------EEDG--------LRNKDGIVIDVNEEEIE--------ETVD-D 118
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
NG +S D T+ T K W +V++GT ++VQV KE L KGP L
Sbjct: 119 PNGEEMEQS----DGKTNVKPATVLRKI----GAWRKVKRGTLMVVQVKKEALRQKGPQL 170
Query: 314 TAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLE 373
TA L R+W+L+ IGV+RKI G+ER+RLK +A+ LQP GFGLT+RT A G S E
Sbjct: 171 TATVALAGRYWVLVPQVSTIGVTRKINGLERSRLKQLARELQPPGFGLTVRTEAVGRSRE 230
Query: 374 ELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKK 433
EL+KDL L+ TW++I+E A+ AA A G + VP+LL RAMGQTL V+D FN +V++
Sbjct: 231 ELEKDLARLMETWRSILERAEVAAAA---GGKDPVPVLLQRAMGQTLRTVRDLFNNEVER 287
Query: 434 MVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGG 493
VVDS +TY EVT+YLQ+IAP LCDRVELY + P+F+ FN+E EI SKRV LPNG
Sbjct: 288 FVVDSSQTYQEVTAYLQEIAPHLCDRVELYSGKEPIFEAFNLEAEIEKSSSKRVELPNGA 347
Query: 494 SLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDF 553
LV+E+TEALVSIDVNGG GM G +S+ +A+L+VNLAAA++IA ELRLRDIGGIIVVDF
Sbjct: 348 YLVLEETEALVSIDVNGGVGMLGDATSQREAVLEVNLAAARKIATELRLRDIGGIIVVDF 407
Query: 554 IDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
IDM D S++RLV+EE++KA+ERDRS V +SE+S GLME+TR R
Sbjct: 408 IDMEDPSHERLVFEEMRKAIERDRSKVVISEISEFGLMEMTRAR 451
>gi|242054377|ref|XP_002456334.1| hypothetical protein SORBIDRAFT_03g034140 [Sorghum bicolor]
gi|241928309|gb|EES01454.1| hypothetical protein SORBIDRAFT_03g034140 [Sorghum bicolor]
Length = 651
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 239/514 (46%), Positives = 299/514 (58%), Gaps = 112/514 (21%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ ++DQP+EEPWLFQS + +T+ N K EA + +K + + L
Sbjct: 177 MHQQDQPVEEPWLFQS---MFELNETIV------HANGKTEARDIIGKLRKIEKPPTPLD 227
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
E S S S VIL+NSS+CT+QRIAVLED KLVELLLEP+K+NVQCDS+YLGVVTK
Sbjct: 228 E--SKPSGGEPSSRVILMNSSVCTIQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGVVTK 285
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IG SRPSLM IK R+PF++P ++ S EE+ TY+N
Sbjct: 286 LVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQVFKNRGTDPIDDSYCN--EENLPTYEN 343
Query: 183 DSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEV--------------LKNVNG 228
D DD+ E ++E HDG F V + + NV+G
Sbjct: 344 D---------------DDMSDDEFENEETHDGSSFPVENITDNEEAVVLASDAKINNVDG 388
Query: 229 SIID-------DGEPEADF------EDFLEGDHHLDGESNGFFPSKSEVPDDSHT--SHP 273
D D + E D ED L+GD +SE+ +D T S
Sbjct: 389 DEFDSISVYDEDKDEENDHMEDEYSEDILQGD-------------QSEISNDLKTLSSIQ 435
Query: 274 QGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFW--------- 324
++S W QV+KGTKV+VQV+KEGLGTKGPTL+ +P LRSRFW
Sbjct: 436 HALRESNDDTNGSRWSQVRKGTKVMVQVIKEGLGTKGPTLSPFPCLRSRFWVANNRSSIV 495
Query: 325 ---------------------------------ILITSCDRIGVSRKITGVERTRLKVIA 351
IL++ +++GVS+KITG+ERTRLK I
Sbjct: 496 LFTFHLVPQIKINPHYLQEILGLTSAVYLLSLQILVSRGNKVGVSKKITGIERTRLKGIT 555
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
K L+P GF LT RTVAAGHS EELQKDL+GLLSTWK I EHA+SAALAA+EGVEGAVP++
Sbjct: 556 KLLRPPGFTLTARTVAAGHSWEELQKDLDGLLSTWKGITEHAQSAALAAEEGVEGAVPVM 615
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEV 445
LHRA GQTLS+VQD FNEKVK++VVDSPRTYHEV
Sbjct: 616 LHRAKGQTLSVVQDDFNEKVKRLVVDSPRTYHEV 649
>gi|373458458|ref|ZP_09550225.1| ribonuclease, Rne/Rng family [Caldithrix abyssi DSM 13497]
gi|371720122|gb|EHO41893.1| ribonuclease, Rne/Rng family [Caldithrix abyssi DSM 13497]
Length = 508
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 155/385 (40%), Positives = 224/385 (58%), Gaps = 32/385 (8%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGD-HHLDGESNGFFPSKSEVPDDSHTSHPQGTK 277
VS VL + + ID G + F F + D +LD +F + D+ H
Sbjct: 46 VSRVLPGMQAAFIDIGHEQNAFLHFQDFDASYLD-----YF---VDYEDEEHV------- 90
Query: 278 DSKHTPGEK---TWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D H E+ + ++K ++VQ++KE +GTKG +T L RF +LI IG
Sbjct: 91 DKDHYQTERRFDVYRDLKKNQDILVQIIKEPIGTKGCRVTTGIALPGRFLVLIPGKKHIG 150
Query: 335 VSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VSRKI ER RLK IA+ + P FGL IRTVA G S + ++KDL LL TW I
Sbjct: 151 VSRKIQNPKERRRLKEIARQIMPPNFGLIIRTVAEGKSDKIIRKDLNNLLDTWHKIERKI 210
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
K P LL++ MG S+++D F V ++VVDS + E+++Y++D+A
Sbjct: 211 KRQK----------APTLLYKDMGMASSVIRDLFTSDVDRVVVDSRKLMRELSAYIKDVA 260
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P L +++ Y +P+FD +NIE+EI M + +V L NG +VIEQTEALVSIDVN G
Sbjct: 261 PHLKEKISYYKGTLPIFDYYNIEKEIEKMENSKVWLRNGAYIVIEQTEALVSIDVNSGK- 319
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
F E L +N+ AA++IAR+ RLRD+GGIIV+DFIDM ++ N++ +Y E++K
Sbjct: 320 -FIGSRDHESNSLKINMEAAREIARQARLRDLGGIIVIDFIDMNEEENRKKLYNELRKEF 378
Query: 574 ERDRSMVKVSELSRHGLMEITRKRA 598
+DRS+ K+ E+SR GL+E+TR+R
Sbjct: 379 AKDRSITKIQEISRFGLIEMTRQRV 403
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
I+IN++ RIA+LED KLVEL +E + +Y G V++++P M AF++IG+
Sbjct: 5 IIINAT-NEETRIAILEDGKLVELFVERPEYERMVGDIYKGRVSRVLPGMQAAFIDIGHE 63
Query: 138 RPSLMDIKHYREPFI 152
+ + + + + ++
Sbjct: 64 QNAFLHFQDFDASYL 78
>gi|385809229|ref|YP_005845625.1| ribonucleases G [Ignavibacterium album JCM 16511]
gi|383801277|gb|AFH48357.1| Ribonucleases G [Ignavibacterium album JCM 16511]
Length = 522
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 208/331 (62%), Gaps = 18/331 (5%)
Query: 268 SHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI 327
+H++H G + + P +++KG ++VQ+ KE + KG +T+ L RF +L+
Sbjct: 101 NHSNHSNGESNHQTFPP-----RLKKGQNILVQITKEPVEGKGVRVTSSISLPGRFCVLL 155
Query: 328 TSCDRIGVSRKITGV-ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
++IG+S+KIT ER RLK IA+++ P+ GL IRTVA E L+ DL L+ TW
Sbjct: 156 PFDNKIGISKKITDFRERRRLKQIARSIIPKNCGLIIRTVAKDQPEELLRDDLNHLVRTW 215
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I + AK+ P L+++ + T S+++D V K+ +DS + Y ++
Sbjct: 216 NRIQQAAKTEE----------PPALVYQDLSTTESVIRDLLTPDVSKVFIDSKKLYRQIK 265
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++QD P+L +++ELY + P+F+ F IEE+I ++ ++VPLP+GG L+IE TEA+V I
Sbjct: 266 NFVQDFQPELAEKIELYKSQHPIFEAFKIEEQIKTLMGRKVPLPSGGYLIIEHTEAMVVI 325
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G + +E L +L AA++IAR+LRLRDIGGIIVVDFID+ D+ NK+ VY
Sbjct: 326 DVNSGK--YAKNLEQELNSLKTDLEAAREIARQLRLRDIGGIIVVDFIDLEDERNKKKVY 383
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+E+KK +DR+ V + +S GL+EITR+R
Sbjct: 384 DELKKEFRKDRAKVSLLPMSDFGLIEITRQR 414
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIG 135
I+INSS R+A+ ED LV+ ++ ++ +YLG + +++P + AFVNIG
Sbjct: 5 IIINSS-SNQTRVAITEDGNLVDFFVDYPENRRMVGDIYLGRIARVLPGIRAAFVNIG 61
>gi|397690718|ref|YP_006527972.1| ribonuclease E and G [Melioribacter roseus P3M]
gi|395812210|gb|AFN74959.1| ribonuclease E and G [Melioribacter roseus P3M]
Length = 516
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 154/423 (36%), Positives = 242/423 (57%), Gaps = 31/423 (7%)
Query: 184 STSHNTEDVAEADSQDDLVQF--EHNDDEEHDGDDF--DVSEVLKNVNGSIIDDGEPEAD 239
ST+ N + E +LV F +H + + G+ + V+ VL + + ID G
Sbjct: 10 STTQNRVAITE---DGNLVDFFVDHPEKQRMVGNIYLGKVARVLPGIRAAFIDIGLKHDA 66
Query: 240 FEDFLE-GDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVI 298
F F + GD G F + G + KH EKT++++ KG +++
Sbjct: 67 FLHFSDIGDR--TEALQGIFDDDDL----DTDENDNGEEKPKHEKKEKTFVRLHKGQEIL 120
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKVIAKTLQPE 357
VQ++KE + KG +T+ + RF +L+ D+IGVS+KIT + ER RL+ IA+ + P+
Sbjct: 121 VQILKEPVKDKGVRVTSSISIPGRFCVLLPMDDKIGVSKKITDIRERKRLRRIARGILPD 180
Query: 358 GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMG 417
GL IRT A E L DL+ L+ WK+I E AK + P LL++ +
Sbjct: 181 NCGLIIRTAAKDQDEEALSADLKYLVKIWKDIEEEAKKQS----------PPALLYKDLS 230
Query: 418 QTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEE 477
T+S+++D F V K+ VDS + + E+ +Y+Q + P L DR+ELY P+F F I+E
Sbjct: 231 TTISVIRDLFTADVSKVFVDSKKLWKEIRNYVQFVQPSLLDRIELYKGEEPIFSTFKIDE 290
Query: 478 EINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAI--LDVNLAAAKQ 535
+I ++ +R+PLP+GG +VIE TEA+ IDVN G + + KE+ + L +L AA++
Sbjct: 291 QIKILMGRRIPLPSGGHIVIEHTEAMTVIDVNSGR----YAAKKEQELNSLKTDLEAARE 346
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
I R+LRLRDIGG+IVVDFID+ D+ N++ +Y+E+KK +DR+ + ++ GLM+ITR
Sbjct: 347 IVRQLRLRDIGGLIVVDFIDLEDEKNRKKIYDELKKEFRKDRAKTALLPMTEFGLMQITR 406
Query: 596 KRA 598
+R
Sbjct: 407 QRV 409
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 79 LINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIG 135
+I S+ T R+A+ ED LV+ ++ + ++YLG V +++P + AF++IG
Sbjct: 5 IIISTSTTQNRVAITEDGNLVDFFVDHPEKQRMVGNIYLGKVARVLPGIRAAFIDIG 61
>gi|168699596|ref|ZP_02731873.1| ribonuclease E [Gemmata obscuriglobus UQM 2246]
Length = 987
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 201/329 (61%), Gaps = 15/329 (4%)
Query: 271 SHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSC 330
S P+G +D + P ++G +VIVQV+KE +GTKGPTL+ Y + R+ +L+ S
Sbjct: 527 SGPKGGRD-RGLPKPPIQEIFKRGQEVIVQVIKEAVGTKGPTLSTYVSIAGRYLVLMPSL 585
Query: 331 DRIGVSRKITGVE-RTRLKVIAKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKN 388
+R+GVSRKI + R RL+ I TL P +G G +RT A +ELQ DL LL W+
Sbjct: 586 NRVGVSRKIEDHDARRRLREIMSTLAPPKGVGFIVRTAAVDRDAKELQNDLAYLLRLWQV 645
Query: 389 IMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSY 448
+++ K A P+ ++R ++D F + + VD + + +
Sbjct: 646 VVKRLKRVA----------GPVEIYRESDMITRTIRDIFTSDIDTIWVDEANAFGHASEF 695
Query: 449 LQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDV 508
LQ + P +R++ +D PLF K++IEEEI + KR+ +P GGSLVIEQTEALV+IDV
Sbjct: 696 LQIVMPKFANRIKHFDHTEPLFHKYSIEEEIAKIHQKRIEMPLGGSLVIEQTEALVAIDV 755
Query: 509 NGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEE 568
N G+ F ++ E+ +NL AAK+IAR+LRLRD+GG+IV DFIDM +S++R V +
Sbjct: 756 NSGN--FRADNNAEETAFQMNLHAAKEIARQLRLRDLGGVIVNDFIDMRSESHRRKVEDA 813
Query: 569 VKKAVERDRSMVKVSELSRHGLMEITRKR 597
++A+ RDR+ K+ +S+ GL+E+TR+R
Sbjct: 814 FREALRRDRARTKILRISQFGLIEMTRQR 842
>gi|325294283|ref|YP_004280797.1| ribonuclease, Rne/Rng family [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325064731|gb|ADY72738.1| ribonuclease, Rne/Rng family [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 508
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 199/306 (65%), Gaps = 13/306 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAK 352
G +V+VQV KE +GTKGP +T + + +L+ + ++IG+SR+IT ER RLK IA+
Sbjct: 119 GQEVLVQVSKEPIGTKGPRITTNITVPGHYLVLLPTVNKIGISRRITDEAERERLKKIAE 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
++PE +G+ +RT A G + E+L+KDLE +L WK ++E A++ P LL
Sbjct: 179 DIKPEDYGIIVRTAAEGATKEDLKKDLEYILRVWKGLLEKAENRP----------PPSLL 228
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
++ + ++D E+V ++++DS + S+ + P L R++ Y K IPLF +
Sbjct: 229 YQDLEIVPKTLRDLLTEEVSEVIIDSKAEFERALSFAKAFIPKLAGRIKYYSKDIPLFQR 288
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F +E+ I LS++V LPNGG +VI++TEALVSIDVN G F + E+ L +NL A
Sbjct: 289 FEVEKAIEKTLSRKVYLPNGGYIVIDETEALVSIDVNSGK--FKKTKTLEETALRINLVA 346
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
AK+IAR+LRLRDIGGIIV+DFIDM ++ NK+L+ + +++ + +DR+ K+ +S GL+E
Sbjct: 347 AKEIARQLRLRDIGGIIVIDFIDMKEEENKQLLLKTLEEELSKDRAKTKIVSMSDLGLVE 406
Query: 593 ITRKRA 598
+TRKR
Sbjct: 407 MTRKRV 412
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
ILIN+ + RIAVLE+ +LVE +E + ++Y G V K+VP + AFV+IG S
Sbjct: 18 ILINAHTKEV-RIAVLEEGELVEFYVERKGNRGIVGNIYKGRVVKIVPAVQAAFVDIGIS 76
Query: 138 RPSLMDIK 145
+ + + +K
Sbjct: 77 KKAFLYVK 84
>gi|146306650|ref|YP_001187115.1| RNAse E [Pseudomonas mendocina ymp]
gi|145574851|gb|ABP84383.1| RNAse E [Pseudomonas mendocina ymp]
Length = 1012
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/364 (38%), Positives = 207/364 (56%), Gaps = 31/364 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK-DSKHTPGEKTWLQVQKGT 295
EA F DF E +GF P K E+ + + P+G + + K +++G
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFSKAPEGGRINIKDV--------LKEGQ 97
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 EVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGL 157
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P GL +RT G S EE+Q DL+ LL W I E + S P L++
Sbjct: 158 NAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASTSRP----------APFLIY 207
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + +++VDS E S++Q + P +++LY+ +PLF++F
Sbjct: 208 QESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQYASKIKLYEDSVPLFNRF 267
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 268 QIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAA 325
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E+
Sbjct: 326 EEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEM 385
Query: 594 TRKR 597
+R+R
Sbjct: 386 SRQR 389
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F P
Sbjct: 64 RHGFLPLKEISREYFSKAP 82
>gi|399521346|ref|ZP_10762086.1| ribonuclease E [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110584|emb|CCH38645.1| ribonuclease E [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 1022
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/364 (38%), Positives = 207/364 (56%), Gaps = 31/364 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK-DSKHTPGEKTWLQVQKGT 295
EA F DF E +GF P K E+ + + P+G + + K +++G
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFSKSPEGGRVNIKDV--------LKEGQ 97
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 EVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGL 157
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P GL +RT G S EE+Q DL+ LL W I E + S P L++
Sbjct: 158 NAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASTSRP----------APFLIY 207
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + +++VDS E S++Q + P +++LY+ +PLF++F
Sbjct: 208 QESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQYASKIKLYEDSVPLFNRF 267
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 268 QIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAA 325
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E+
Sbjct: 326 EEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEM 385
Query: 594 TRKR 597
+R+R
Sbjct: 386 SRQR 389
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F P
Sbjct: 64 RHGFLPLKEISREYFSKSP 82
>gi|430744096|ref|YP_007203225.1| ribonuclease G and E [Singulisphaera acidiphila DSM 18658]
gi|430015816|gb|AGA27530.1| ribonuclease G and E [Singulisphaera acidiphila DSM 18658]
Length = 1101
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/308 (41%), Positives = 192/308 (62%), Gaps = 14/308 (4%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVI 350
++G +V+VQV+KE +GTKGPTL+ Y + R+ +L+ +R+GVSRKI +R +L+ I
Sbjct: 688 RRGDEVLVQVIKESIGTKGPTLSTYISIPGRYLVLMPGLNRVGVSRKIADETQRRKLREI 747
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
L P +G G +RT + EL +DL LL WK I+ K A A P
Sbjct: 748 MTELNPPKGLGFIVRTAGLERTKRELARDLAYLLRLWKVILRRIKKAKTPA--------P 799
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
I M ++D F ++ + +D P + +L+ + P +R++LYD+++PL
Sbjct: 800 IYQESDM--ITRTIRDIFTSEIDTIWIDEPAAFERAQEFLKVVMPRFVNRLKLYDEKVPL 857
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F K+ IE+EI + + VPLP GGS+VI+QTEALV+IDVN G+ F + EK ++N
Sbjct: 858 FHKYGIEDEIAKIQRRTVPLPEGGSIVIDQTEALVAIDVNSGN--FRVENDAEKTAYEMN 915
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AAK+IAR+LRLRD+GG+IV DFIDM D+ ++R V + ++ A++RDR+ KV +S G
Sbjct: 916 LRAAKEIARQLRLRDLGGVIVNDFIDMRDERHRRGVEKALRDAIKRDRARTKVLRMSAFG 975
Query: 590 LMEITRKR 597
L+E+TR+R
Sbjct: 976 LIEMTRQR 983
>gi|421504525|ref|ZP_15951466.1| ribonuclease E [Pseudomonas mendocina DLHK]
gi|400344483|gb|EJO92852.1| ribonuclease E [Pseudomonas mendocina DLHK]
Length = 999
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/364 (38%), Positives = 207/364 (56%), Gaps = 31/364 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK-DSKHTPGEKTWLQVQKGT 295
EA F DF E +GF P K E+ + + P+G + + K +++G
Sbjct: 41 EAAFVDF-------GSERHGFLPLK-EISREYFSKAPEGGRINIKDV--------LKEGQ 84
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 85 EVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGL 144
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P GL +RT G S EE+Q DL+ LL W I E + S P L++
Sbjct: 145 NAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASTSRP----------APFLIY 194
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + +++VDS E S++Q + P +++LY+ +PLF++F
Sbjct: 195 QESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQYASKIKLYEDSVPLFNRF 254
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 255 QIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAA 312
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E+
Sbjct: 313 EEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEM 372
Query: 594 TRKR 597
+R+R
Sbjct: 373 SRQR 376
>gi|330502587|ref|YP_004379456.1| RNAse E [Pseudomonas mendocina NK-01]
gi|328916873|gb|AEB57704.1| RNAse E [Pseudomonas mendocina NK-01]
Length = 1016
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 139/364 (38%), Positives = 207/364 (56%), Gaps = 31/364 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK-DSKHTPGEKTWLQVQKGT 295
EA F DF E +GF P K E+ + + P+G + + K +++G
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFSKAPEGGRVNIKDV--------LKEGQ 94
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 EVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGL 154
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P GL +RT G S EE+Q DL+ LL W I E + S P L++
Sbjct: 155 NAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASTSRP----------APFLIY 204
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + +++VDS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 QESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQYASKIKLYEDSVPLFNRF 264
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 265 QIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAA 322
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E+
Sbjct: 323 EEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEM 382
Query: 594 TRKR 597
+R+R
Sbjct: 383 SRQR 386
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 1 MLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSE 60
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F P
Sbjct: 61 RHGFLPLKEISREYFSKAP 79
>gi|431926825|ref|YP_007239859.1| Rne/Rng family ribonuclease [Pseudomonas stutzeri RCH2]
gi|431825112|gb|AGA86229.1| ribonuclease, Rne/Rng family [Pseudomonas stutzeri RCH2]
Length = 1060
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + + +K + A P L+++
Sbjct: 158 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVKDASK----------DRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|443472948|ref|ZP_21062973.1| Ribonuclease E [Pseudomonas pseudoalcaligenes KF707]
gi|442903511|gb|ELS28802.1| Ribonuclease E [Pseudomonas pseudoalcaligenes KF707]
Length = 1056
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + +P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKNPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + +++VDS + E S+++ + P +++LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLVDSVEAHEEALSFIRQVMPQYQSKIKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|339494689|ref|YP_004714982.1| ribonuclease E [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338802061|gb|AEJ05893.1| ribonuclease E [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 1052
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 205/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + A P L+++
Sbjct: 155 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|421855140|ref|ZP_16287521.1| ribonuclease E [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|403189458|dbj|GAB73722.1| ribonuclease E [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 1169
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 189/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGAVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 MLASLDVPRGMSVIVRTAGIGRSQEELQTDLQHLLDLWTQIQSTANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVSEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALST 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG+IV+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLIVIDFIDMTRDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|397687640|ref|YP_006524959.1| ribonuclease E [Pseudomonas stutzeri DSM 10701]
gi|395809196|gb|AFN78601.1| ribonuclease E [Pseudomonas stutzeri DSM 10701]
Length = 1014
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF D H GF P K E+ + P+G + K + +G +
Sbjct: 41 EAAFVDFG-SDRH------GFLPLK-EISREYFKKTPEGRVNIKDV--------LSEGQE 84
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 85 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 144
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W + E + E P L+++
Sbjct: 145 IPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAVKEAS----------AERQAPFLIYQ 194
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS +E S++Q + P +++LY+ +PLF++F
Sbjct: 195 ESNVIIRAIRDYLRQDIGEVLIDSVEAQNEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 254
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGSLVI+ TEALVSID+N G E+ L NL AA+
Sbjct: 255 IESQIETAFQREVKLPSGGSLVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 312
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 313 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 372
Query: 595 RKR 597
R+R
Sbjct: 373 RQR 375
>gi|421464743|ref|ZP_15913433.1| ribonuclease E/G family protein [Acinetobacter radioresistens
WC-A-157]
gi|400205496|gb|EJO36477.1| ribonuclease E/G family protein [Acinetobacter radioresistens
WC-A-157]
Length = 1169
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 189/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGAVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 MLASLDVPRGMSVIVRTAGIGRSQEELQTDLQHLLDLWTQIQSTANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVSEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALST 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG+IV+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLIVIDFIDMTRDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|146282970|ref|YP_001173123.1| ribonuclease E [Pseudomonas stutzeri A1501]
gi|145571175|gb|ABP80281.1| ribonuclease E [Pseudomonas stutzeri A1501]
Length = 1070
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 205/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 69 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 112
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 113 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 172
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + A P L+++
Sbjct: 173 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRAAPFLIYQ 222
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 223 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 282
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 283 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 340
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 341 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 400
Query: 595 RKR 597
R+R
Sbjct: 401 RQR 403
>gi|419953560|ref|ZP_14469704.1| ribonuclease E [Pseudomonas stutzeri TS44]
gi|387969620|gb|EIK53901.1| ribonuclease E [Pseudomonas stutzeri TS44]
Length = 997
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 41 EAAFVDF-------GAERHGFLPLK-EISREYFSKAPEGRVNIKEV--------LKEGQE 84
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ +
Sbjct: 85 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGIN 144
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + + ++ A P L+++
Sbjct: 145 VPADMGLIVRTAGLGRSSEELQWDLDYLLQLWTAVKDASQGRA----------APFLIYQ 194
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 195 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 254
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 255 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 312
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ ++V +SR GL+E++
Sbjct: 313 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARIQVGRISRFGLLEMS 372
Query: 595 RKR 597
R+R
Sbjct: 373 RQR 375
>gi|386021349|ref|YP_005939373.1| ribonuclease E [Pseudomonas stutzeri DSM 4166]
gi|327481321|gb|AEA84631.1| ribonuclease E [Pseudomonas stutzeri DSM 4166]
Length = 1052
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 205/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + A P L+++
Sbjct: 155 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|226227106|ref|YP_002761212.1| ribonuclease G [Gemmatimonas aurantiaca T-27]
gi|226090297|dbj|BAH38742.1| ribonuclease G [Gemmatimonas aurantiaca T-27]
Length = 520
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 192/309 (62%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+++G +++VQ+ KE + TKGP +TA L RF + + ++GVSRKI ER RL+
Sbjct: 114 LKRGQEILVQITKEPISTKGPRVTAQVSLAGRFLVYMPFASKVGVSRKIDERSERQRLRA 173
Query: 350 IAKTLQPE-GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ + P+ G+ +RTV+ + E +++L+ L++ WK I +
Sbjct: 174 MVGEMLPDDAGGVIVRTVSEDATKETFERELQTLINNWKRIKRKTQFTR----------A 223
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+HR T +V+D F+ KV+++ VDS + Y+E+T YLQ IAP+L +RV+LY++ +P
Sbjct: 224 PSLVHRETNVTRGLVRDLFSAKVERVQVDSKQVYNEITEYLQGIAPELVERVKLYEENVP 283
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LFDK IE EI ++ +R LP+GG L+ E TEALVSIDVN G + EK IL
Sbjct: 284 LFDKEGIETEIRDLFKRRCDLPSGGYLIFEPTEALVSIDVNSGR--YTGKRDPEKTILKT 341
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA++IAR+LRLRD+GGIIV DFIDM SN+ V E++ + RDR+ K +S
Sbjct: 342 NTEAAREIARQLRLRDVGGIIVCDFIDMETQSNRDKVLHELRTHLGRDRARTKAFAVSDL 401
Query: 589 GLMEITRKR 597
GL+E+TR+R
Sbjct: 402 GLVEMTRQR 410
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
IL+N++ R+A++ED +LVELL++ + VYLG V ++P + AFVNIG
Sbjct: 5 ILVNAT-PRETRVAIIEDGQLVELLVDRPDARRMVGDVYLGKVEAVLPGIQAAFVNIGTE 63
Query: 138 RPSLM 142
+ + +
Sbjct: 64 KSAFL 68
>gi|255321252|ref|ZP_05362418.1| ribonuclease E [Acinetobacter radioresistens SK82]
gi|262380062|ref|ZP_06073217.1| ribonuclease E [Acinetobacter radioresistens SH164]
gi|255301806|gb|EET81057.1| ribonuclease E [Acinetobacter radioresistens SK82]
gi|262298256|gb|EEY86170.1| ribonuclease E [Acinetobacter radioresistens SH164]
Length = 1170
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 189/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGAVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 MLASLDVPRGMSVIVRTAGIGRSQEELQTDLQHLLDLWTQIQSTANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVSEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALST 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG+IV+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLIVIDFIDMTRDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|453043708|gb|EME91436.1| ribonuclease E [Pseudomonas aeruginosa PA21_ST175]
Length = 1054
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|152988059|ref|YP_001347557.1| ribonuclease E [Pseudomonas aeruginosa PA7]
gi|150963217|gb|ABR85242.1| ribonuclease E (RNase E) [Pseudomonas aeruginosa PA7]
Length = 1073
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 69 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 112
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 113 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 172
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 173 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 222
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 223 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 282
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 283 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 340
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 341 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 400
Query: 595 RKR 597
R+R
Sbjct: 401 RQR 403
>gi|418586457|ref|ZP_13150499.1| ribonuclease E [Pseudomonas aeruginosa MPAO1/P1]
gi|418591012|ref|ZP_13154916.1| ribonuclease E [Pseudomonas aeruginosa MPAO1/P2]
gi|421517505|ref|ZP_15964179.1| ribonuclease E [Pseudomonas aeruginosa PAO579]
gi|375043200|gb|EHS35831.1| ribonuclease E [Pseudomonas aeruginosa MPAO1/P1]
gi|375050253|gb|EHS42736.1| ribonuclease E [Pseudomonas aeruginosa MPAO1/P2]
gi|404346987|gb|EJZ73336.1| ribonuclease E [Pseudomonas aeruginosa PAO579]
Length = 1054
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|116050978|ref|YP_790197.1| ribonuclease E [Pseudomonas aeruginosa UCBPP-PA14]
gi|421173826|ref|ZP_15631563.1| ribonuclease E [Pseudomonas aeruginosa CI27]
gi|115586199|gb|ABJ12214.1| ribonuclease E [Pseudomonas aeruginosa UCBPP-PA14]
gi|404535350|gb|EKA45051.1| ribonuclease E [Pseudomonas aeruginosa CI27]
Length = 1057
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|452747533|ref|ZP_21947328.1| ribonuclease E [Pseudomonas stutzeri NF13]
gi|452008649|gb|EME00887.1| ribonuclease E [Pseudomonas stutzeri NF13]
Length = 1039
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFSKAPEGRVNIKDV--------LREGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + E ++ + P L+++
Sbjct: 155 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVKEASQ----------DRPAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|421153582|ref|ZP_15613123.1| ribonuclease E [Pseudomonas aeruginosa ATCC 14886]
gi|404523424|gb|EKA33847.1| ribonuclease E [Pseudomonas aeruginosa ATCC 14886]
Length = 1057
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|386067007|ref|YP_005982311.1| ribonuclease E [Pseudomonas aeruginosa NCGM2.S1]
gi|348035566|dbj|BAK90926.1| ribonuclease E [Pseudomonas aeruginosa NCGM2.S1]
Length = 1054
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|107102525|ref|ZP_01366443.1| hypothetical protein PaerPA_01003589 [Pseudomonas aeruginosa PACS2]
Length = 1054
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|421179863|ref|ZP_15637437.1| ribonuclease E [Pseudomonas aeruginosa E2]
gi|404546441|gb|EKA55495.1| ribonuclease E [Pseudomonas aeruginosa E2]
Length = 1060
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|421166876|ref|ZP_15625097.1| ribonuclease E [Pseudomonas aeruginosa ATCC 700888]
gi|404536574|gb|EKA46211.1| ribonuclease E [Pseudomonas aeruginosa ATCC 700888]
Length = 1057
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|392983297|ref|YP_006481884.1| ribonuclease E [Pseudomonas aeruginosa DK2]
gi|419756447|ref|ZP_14282797.1| ribonuclease E [Pseudomonas aeruginosa PADK2_CF510]
gi|384397178|gb|EIE43591.1| ribonuclease E [Pseudomonas aeruginosa PADK2_CF510]
gi|392318802|gb|AFM64182.1| ribonuclease E [Pseudomonas aeruginosa DK2]
Length = 1054
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|296388531|ref|ZP_06878006.1| ribonuclease E [Pseudomonas aeruginosa PAb1]
Length = 1054
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|386058051|ref|YP_005974573.1| ribonuclease E [Pseudomonas aeruginosa M18]
gi|347304357|gb|AEO74471.1| ribonuclease E [Pseudomonas aeruginosa M18]
Length = 1054
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|254235950|ref|ZP_04929273.1| ribonuclease E [Pseudomonas aeruginosa C3719]
gi|126167881|gb|EAZ53392.1| ribonuclease E [Pseudomonas aeruginosa C3719]
Length = 1057
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|420139198|ref|ZP_14647055.1| ribonuclease E [Pseudomonas aeruginosa CIG1]
gi|421159714|ref|ZP_15618826.1| ribonuclease E [Pseudomonas aeruginosa ATCC 25324]
gi|403248068|gb|EJY61667.1| ribonuclease E [Pseudomonas aeruginosa CIG1]
gi|404546364|gb|EKA55419.1| ribonuclease E [Pseudomonas aeruginosa ATCC 25324]
Length = 1057
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|254241683|ref|ZP_04935005.1| ribonuclease E [Pseudomonas aeruginosa 2192]
gi|126195061|gb|EAZ59124.1| ribonuclease E [Pseudomonas aeruginosa 2192]
Length = 1057
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|355641290|ref|ZP_09052175.1| hypothetical protein HMPREF1030_01261 [Pseudomonas sp. 2_1_26]
gi|354830888|gb|EHF14920.1| hypothetical protein HMPREF1030_01261 [Pseudomonas sp. 2_1_26]
Length = 1072
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 69 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 112
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 113 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 172
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 173 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 222
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 223 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 282
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 283 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 340
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 341 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 400
Query: 595 RKR 597
R+R
Sbjct: 401 RQR 403
>gi|15598172|ref|NP_251666.1| ribonuclease E [Pseudomonas aeruginosa PAO1]
gi|9949075|gb|AAG06364.1|AE004723_8 ribonuclease E [Pseudomonas aeruginosa PAO1]
Length = 1057
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|421616809|ref|ZP_16057811.1| ribonuclease E [Pseudomonas stutzeri KOS6]
gi|421617297|ref|ZP_16058291.1| ribonuclease E [Pseudomonas stutzeri KOS6]
gi|409780795|gb|EKN60412.1| ribonuclease E [Pseudomonas stutzeri KOS6]
gi|409781290|gb|EKN60892.1| ribonuclease E [Pseudomonas stutzeri KOS6]
Length = 1045
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 41 EAAFVDF-------GAERHGFLPLK-EISREYFSKAPEGRVNIKDV--------LREGQE 84
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 85 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 144
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + P L+++
Sbjct: 145 VPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRVAPFLIYQ 194
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 195 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 254
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 255 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 312
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ ++V +SR GL+E++
Sbjct: 313 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARIQVGRISRFGLLEMS 372
Query: 595 RKR 597
R+R
Sbjct: 373 RQR 375
>gi|409398217|ref|ZP_11249038.1| ribonuclease E [Pseudomonas sp. Chol1]
gi|409117350|gb|EKM93784.1| ribonuclease E [Pseudomonas sp. Chol1]
Length = 998
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 41 EAAFVDF-------GAERHGFLPLK-EISREYFSKAPEGRVNIKEV--------LKEGQE 84
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ +
Sbjct: 85 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGIN 144
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + + ++ A P L+++
Sbjct: 145 VPADMGLIVRTAGLGRSSEELQWDLDYLLQLWTAVKDASQGRA----------APFLIYQ 194
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 195 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 254
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 255 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 312
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 313 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 372
Query: 595 RKR 597
R+R
Sbjct: 373 RQR 375
>gi|429214947|ref|ZP_19206109.1| ribonuclease E [Pseudomonas sp. M1]
gi|428154174|gb|EKX00725.1| ribonuclease E [Pseudomonas sp. M1]
Length = 1090
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + +P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKNPEGRINIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEELQWDLDYLLQLWGAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|218890825|ref|YP_002439689.1| ribonuclease E [Pseudomonas aeruginosa LESB58]
gi|218771048|emb|CAW26813.1| ribonuclease E [Pseudomonas aeruginosa LESB58]
Length = 1057
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREGLNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT + G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTASLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|452879504|ref|ZP_21956597.1| ribonuclease E, partial [Pseudomonas aeruginosa VRFPA01]
gi|452183939|gb|EME10957.1| ribonuclease E, partial [Pseudomonas aeruginosa VRFPA01]
Length = 587
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 208/377 (55%), Gaps = 32/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F DF E +GF P K E+ + P+G + K
Sbjct: 37 NIYKGRITRVEPSLEAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G
Sbjct: 89 --------LSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEG 140
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L P GL +RT G S EELQ DL+ LL W I E +
Sbjct: 141 EERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS------- 193
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G GA P L+++ + ++DY + + ++++DS E ++++ + P +V
Sbjct: 194 --GERGA-PFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKV 250
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF++F IE +I + V LP+GGS+VI+ TEALVSID+N G
Sbjct: 251 KLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGD 308
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA++IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V
Sbjct: 309 IEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARV 368
Query: 581 KVSELSRHGLMEITRKR 597
+V +SR GL+E++R+R
Sbjct: 369 QVGRISRFGLLEMSRQR 385
>gi|374705009|ref|ZP_09711879.1| ribonuclease E [Pseudomonas sp. S9]
Length = 1011
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPDGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + A P L+++
Sbjct: 155 APVDMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASQ----------DRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + +++VDS E S+++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+ I+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIFIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|416860810|ref|ZP_11914413.1| ribonuclease E, partial [Pseudomonas aeruginosa 138244]
gi|334837284|gb|EGM16053.1| ribonuclease E [Pseudomonas aeruginosa 138244]
Length = 683
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 208/377 (55%), Gaps = 32/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F DF E +GF P K E+ + P+G + K
Sbjct: 37 NIYKGRITRVEPSLEAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G
Sbjct: 89 --------LSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEG 140
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L P GL +RT G S EELQ DL+ LL W I E +
Sbjct: 141 EERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS------- 193
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G GA P L+++ + ++DY + + ++++DS E ++++ + P +V
Sbjct: 194 --GERGA-PFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKV 250
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF++F IE +I + V LP+GGS+VI+ TEALVSID+N G
Sbjct: 251 KLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGD 308
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA++IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V
Sbjct: 309 IEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARV 368
Query: 581 KVSELSRHGLMEITRKR 597
+V +SR GL+E++R+R
Sbjct: 369 QVGRISRFGLLEMSRQR 385
>gi|319789105|ref|YP_004150738.1| ribonuclease, Rne/Rng family [Thermovibrio ammonificans HB-1]
gi|317113607|gb|ADU96097.1| ribonuclease, Rne/Rng family [Thermovibrio ammonificans HB-1]
Length = 500
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 197/306 (64%), Gaps = 13/306 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAK 352
G +++VQV KE +GTKGP +T + + +L+ + +++G+SR+IT ER RLK IA
Sbjct: 110 GQELLVQVAKEPIGTKGPRVTTNITIPGHYLVLLPTINKLGLSRRITDEAERERLKEIAS 169
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
++P +GL +RT A G S EEL+KDL +L W+ + E A+ P LL
Sbjct: 170 EIKPPEYGLIVRTAAEGASKEELEKDLNYILKVWEGLKEKAQRRP----------PPTLL 219
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
++ + ++D E+V ++++DS + S+ + P L DR++LY+ +IPLF+K
Sbjct: 220 YQDLEIVPKTLRDLLTEEVTEVIIDSRSEFERALSFTKGFIPKLADRIKLYEGKIPLFEK 279
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F +E+ I LS++V LP GG +VI++TEALVSIDVN G F S+ E+ L++NL A
Sbjct: 280 FQVEKAIEKALSRKVYLPGGGYIVIDETEALVSIDVNSGK--FKKSSTLEETALEINLKA 337
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A++IAR+LRLRDIGGIIV+DFIDM + NK L+ + +++ + +DR+ K+ +S GL+E
Sbjct: 338 AREIARQLRLRDIGGIIVIDFIDMKEPENKELLLKTLEEELSKDRARTKIVSMSDLGLVE 397
Query: 593 ITRKRA 598
+TRKR
Sbjct: 398 MTRKRV 403
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
ILINSS + RIAVLE+ +LVE +E + ++Y G VTK+VP + AFV+IG S
Sbjct: 14 ILINSSTKEV-RIAVLEEGELVEFYVERKGNRGLVGNIYKGKVTKIVPAVQAAFVDIGES 72
Query: 138 RPSLMDIK 145
R + + +K
Sbjct: 73 RSAFLYVK 80
>gi|416876658|ref|ZP_11919349.1| ribonuclease E, partial [Pseudomonas aeruginosa 152504]
gi|334840496|gb|EGM19148.1| ribonuclease E [Pseudomonas aeruginosa 152504]
Length = 661
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 208/377 (55%), Gaps = 32/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F DF E +GF P K E+ + P+G + K
Sbjct: 37 NIYKGRITRVEPSLEAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G
Sbjct: 89 --------LSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEG 140
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L P GL +RT G S EELQ DL+ LL W I E +
Sbjct: 141 EERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS------- 193
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G GA P L+++ + ++DY + + ++++DS E ++++ + P +V
Sbjct: 194 --GERGA-PFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKV 250
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF++F IE +I + V LP+GGS+VI+ TEALVSID+N G
Sbjct: 251 KLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGD 308
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA++IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V
Sbjct: 309 IEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARV 368
Query: 581 KVSELSRHGLMEITRKR 597
+V +SR GL+E++R+R
Sbjct: 369 QVGRISRFGLLEMSRQR 385
>gi|418294222|ref|ZP_12906118.1| ribonuclease E [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379065601|gb|EHY78344.1| ribonuclease E [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 1041
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + P L+++
Sbjct: 155 VPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRVAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|429335474|ref|ZP_19216102.1| ribonuclease E [Pseudomonas putida CSV86]
gi|428759859|gb|EKX82145.1| ribonuclease E [Pseudomonas putida CSV86]
Length = 1058
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + +P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKNPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + A P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASQ----------DRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|114331691|ref|YP_747913.1| ribonuclease, Rne/Rng family protein [Nitrosomonas eutropha C91]
gi|114308705|gb|ABI59948.1| RNAse E [Nitrosomonas eutropha C91]
Length = 849
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 217/377 (57%), Gaps = 31/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ + + EP EA F D+ G H GF P K P T + T+ S H
Sbjct: 40 NIYKAAVTRLEPSLEAAFVDYGAGRH-------GFLPYKEIAP----TCFDKNTERSSHR 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
GE +++G ++IVQV K+ G KG LT Y L R+ +L+ + + G +SR+++
Sbjct: 89 IGEL----LREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSA 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ + LQ P+G + RT G + EELQ DL L+ W+ I A ++
Sbjct: 145 EERAELREVINHLQVPDGMSIIARTAGIGRNEEELQWDLNYLVQLWRAI-----EGAASS 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ GV L+++ + ++DYF+ ++ ++++D+P Y + ++ ++ P DR+
Sbjct: 200 ERGV-----FLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAYQFMANVMPANVDRL 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY IPLF +F IE +I S++V LP+GGS+VI+ TEALVSIDVN + GS
Sbjct: 255 KLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDVNSARAI--RGSD 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E L+ NL AA +IAR+LRLRD+GG++VVDFIDM N+R V + KA+ DR+ V
Sbjct: 313 IENTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETNLLKALRLDRARV 372
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GL+E++R+R
Sbjct: 373 QIGKISRFGLLELSRQR 389
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + + ++Y VT+L P++ AFV+ G
Sbjct: 4 MLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYGAG 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPYK 71
>gi|170720702|ref|YP_001748390.1| ribonuclease [Pseudomonas putida W619]
gi|169758705|gb|ACA72021.1| ribonuclease, Rne/Rng family [Pseudomonas putida W619]
Length = 1072
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 205/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 64 RHGFLPLKEISREYF 78
>gi|149911609|ref|ZP_01900221.1| ribonuclease E [Moritella sp. PE36]
gi|149805330|gb|EDM65343.1| ribonuclease E [Moritella sp. PE36]
Length = 1125
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 205/363 (56%), Gaps = 27/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + S QGT + P K + +GT+
Sbjct: 51 EAAFVDY-GADRH------GFLPLK----EISRAYFKQGTGKQRGRPSIKDV--IAEGTE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 98 VIVQIEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKTALATLE 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEG GL +RT G S EEL DL+ LL+ W+ I + AK +G L+H+
Sbjct: 158 LPEGMGLIVRTAGVGKSAEELDWDLKVLLNHWQAIQDSAKD-----RQGT-----FLIHQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
++DY + ++++D P+ + E + ++ I PD DR++LY +PLF+ +
Sbjct: 208 ESNVIARAIRDYLRRDIGEILIDHPKAFEEAKNRIKLIRPDFIDRIKLYQGDVPLFNHYQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SIDVN G E+ L NL AA
Sbjct: 268 IETQIESAFQREVRLPSGGSIVIDPTEALTSIDVNSARAT--RGGDIEETALTTNLEAAD 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
++AR+LRLRD+GG++V+DFIDM N+R V ++ AV +DR+ +++ +SR GLME++
Sbjct: 326 EVARQLRLRDLGGLVVIDFIDMGPVKNQREVENCLRDAVRQDRARIQLGRISRFGLMEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|409422872|ref|ZP_11259950.1| ribonuclease E [Pseudomonas sp. HYS]
Length = 1050
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKSPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + A P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASQ----------DRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|392421832|ref|YP_006458436.1| ribonuclease E [Pseudomonas stutzeri CCUG 29243]
gi|390984020|gb|AFM34013.1| ribonuclease E [Pseudomonas stutzeri CCUG 29243]
Length = 1035
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + P L+++
Sbjct: 155 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRPAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|398889173|ref|ZP_10643083.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM55]
gi|398189831|gb|EJM77093.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM55]
Length = 1029
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|398915381|ref|ZP_10657300.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM49]
gi|398176454|gb|EJM64172.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM49]
Length = 1024
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|374850705|dbj|BAL53687.1| hypothetical conserved protein [uncultured planctomycete]
Length = 639
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 192/308 (62%), Gaps = 14/308 (4%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVI 350
++G +V+VQV+KEG+GTKGPTL+ Y + R+ +L+ RIGVSRKIT +R +L+ I
Sbjct: 235 RRGQEVLVQVIKEGIGTKGPTLSTYISIPGRYLVLMPGLQRIGVSRKITDEQQRRKLRQI 294
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ L P +G G IRT + +ELQ+DL L WK ++ + P
Sbjct: 295 LQELHPPKGLGFIIRTAGLDRTKKELQRDLAYLSRVWKVVIRRVRKTK----------AP 344
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L+++ + ++D F+ V + VD P Y +LQ + P +R++LY + PL
Sbjct: 345 GLIYQESDMIIRTIRDVFDSNVATIWVDEPHAYEHAREFLQIVMPRYANRLKLYAENEPL 404
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F ++ IE+EI + S+RV LP G S+VI+ TEALV++DVN G+ F + E+ VN
Sbjct: 405 FHRYGIEKEIARVQSRRVLLPGGASIVIDTTEALVAVDVNSGN--FRADNDAEQTAYQVN 462
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
LAAAK+IAR+LRLRD+GG+I++DFIDM ++ +KR V +++AV+RDR+ K+ +S
Sbjct: 463 LAAAKEIARQLRLRDLGGVIIIDFIDMREEHHKREVERVLREAVKRDRARTKILRMSPFC 522
Query: 590 LMEITRKR 597
++E+TR+R
Sbjct: 523 IVEMTRQR 530
>gi|426410940|ref|YP_007031039.1| ribonuclease E [Pseudomonas sp. UW4]
gi|426269157|gb|AFY21234.1| ribonuclease E [Pseudomonas sp. UW4]
Length = 1064
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|410092614|ref|ZP_11289136.1| ribonuclease E [Pseudomonas viridiflava UASWS0038]
gi|409760043|gb|EKN45211.1| ribonuclease E [Pseudomonas viridiflava UASWS0038]
Length = 1083
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|333901067|ref|YP_004474940.1| ribonuclease, Rne/Rng family [Pseudomonas fulva 12-X]
gi|333116332|gb|AEF22846.1| ribonuclease, Rne/Rng family [Pseudomonas fulva 12-X]
Length = 1055
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFSKAPEGRVNIKDV--------LKEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + P L+++
Sbjct: 158 IPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASQ----------DRPAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + +++VDS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+ I+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIYIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|28870994|ref|NP_793613.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28854243|gb|AAO57308.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 1128
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 401
Query: 595 RKR 597
R+R
Sbjct: 402 RQR 404
>gi|399910322|ref|ZP_10778636.1| ribonuclease E [Halomonas sp. KM-1]
Length = 1091
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF D H GF P K S K++ P K L+ +G +
Sbjct: 51 EAAFVDFG-ADRH------GFLPLK-------EISREYFLKEASGRPSIKEVLK--EGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G ERT+LK L
Sbjct: 95 VIVQVDKEERGNKGAALTTFISLAGRFLVLMPNNPRAGGISRRIEGDERTQLKEAMGLLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PE G+ +RT G S EELQ DL+ L+ W++I E A G A P L++R
Sbjct: 155 VPEKMGVIVRTAGIGRSSEELQWDLDYLVQVWESITEEA---------GKRPA-PFLIYR 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DSP + E ++++ + P +++LY +PLF +F
Sbjct: 205 ESNVIIRAMRDYLRQDIGEVLIDSPEVHQEALTFIRQVMPSYQQKIKLYADEVPLFSRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 265 IESQIETAYEREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQTNLEAAD 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM+ N+R V ++ A++ DR+ V++ +SR GLME++
Sbjct: 323 EIARQLRLRDIGGLVVIDFIDMSPARNQREVENRMRDALKLDRARVQIGRISRFGLMEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|422590957|ref|ZP_16665607.1| ribonuclease E [Pseudomonas syringae pv. morsprunorum str. M302280]
gi|330878260|gb|EGH12409.1| ribonuclease E [Pseudomonas syringae pv. morsprunorum str. M302280]
Length = 1109
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|301382848|ref|ZP_07231266.1| ribonuclease E [Pseudomonas syringae pv. tomato Max13]
gi|302062846|ref|ZP_07254387.1| ribonuclease E [Pseudomonas syringae pv. tomato K40]
gi|302131354|ref|ZP_07257344.1| ribonuclease E [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422660562|ref|ZP_16722972.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M302278]
gi|331019165|gb|EGH99221.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M302278]
Length = 1109
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|213969772|ref|ZP_03397907.1| RNAse E [Pseudomonas syringae pv. tomato T1]
gi|213925580|gb|EEB59140.1| RNAse E [Pseudomonas syringae pv. tomato T1]
Length = 1112
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|399004330|ref|ZP_10706957.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM18]
gi|398119643|gb|EJM09325.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM18]
Length = 947
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKTPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|398928247|ref|ZP_10663356.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM48]
gi|398168666|gb|EJM56672.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM48]
Length = 1067
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|398955617|ref|ZP_10676545.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM33]
gi|398150884|gb|EJM39456.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM33]
Length = 700
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|422653203|ref|ZP_16715974.1| ribonuclease E [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330966257|gb|EGH66517.1| ribonuclease E [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 1112
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|399008412|ref|ZP_10710885.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM17]
gi|398116465|gb|EJM06227.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM17]
Length = 1068
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|389685606|ref|ZP_10176930.1| ribonuclease E [Pseudomonas chlororaphis O6]
gi|388551259|gb|EIM14528.1| ribonuclease E [Pseudomonas chlororaphis O6]
Length = 1065
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|237800338|ref|ZP_04588799.1| ribonuclease E [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331023195|gb|EGI03252.1| ribonuclease E [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 1093
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|398847230|ref|ZP_10604159.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM84]
gi|398251784|gb|EJN37012.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM84]
Length = 1085
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 64 RHGFLPLKEISREYF 78
>gi|422595278|ref|ZP_16669566.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M301315]
gi|330985583|gb|EGH83686.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 1112
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|440738417|ref|ZP_20917950.1| ribonuclease E [Pseudomonas fluorescens BRIP34879]
gi|440381089|gb|ELQ17633.1| ribonuclease E [Pseudomonas fluorescens BRIP34879]
Length = 1046
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|416028271|ref|ZP_11571327.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. race 4]
gi|320327713|gb|EFW83721.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. race 4]
Length = 1110
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|416015324|ref|ZP_11562937.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. B076]
gi|320325302|gb|EFW81369.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. B076]
Length = 1083
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|425898392|ref|ZP_18874983.1| ribonuclease E [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
gi|397891346|gb|EJL07824.1| ribonuclease E [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
Length = 1070
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|422683287|ref|ZP_16741548.1| ribonuclease E [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|331012622|gb|EGH92678.1| ribonuclease E [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 1110
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|298159218|gb|EFI00276.1| Ribonuclease E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
Length = 1129
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 401
Query: 595 RKR 597
R+R
Sbjct: 402 RQR 404
>gi|422632643|ref|ZP_16697808.1| ribonuclease E, partial [Pseudomonas syringae pv. pisi str. 1704B]
gi|330942729|gb|EGH45265.1| ribonuclease E [Pseudomonas syringae pv. pisi str. 1704B]
Length = 603
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K E G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDVLSE--------GQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|422404568|ref|ZP_16481620.1| ribonuclease E, partial [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330877843|gb|EGH11992.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. race 4]
Length = 504
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K E G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDVLSE--------GQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|254283338|ref|ZP_04958306.1| ribonuclease E [gamma proteobacterium NOR51-B]
gi|219679541|gb|EED35890.1| ribonuclease E [gamma proteobacterium NOR51-B]
Length = 946
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 208/363 (57%), Gaps = 27/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF D H GF P K T+ P G K +++GT+
Sbjct: 54 EAAFVDF-GADRH------GFLPLKEIAHQYYRTNAPSGEGRVK------IRDVLKEGTE 100
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
++VQV KE G+KG LT++ L R+ +L+ + + G +SR+I G +R+ L+ +A+
Sbjct: 101 LLVQVDKEERGSKGAALTSFISLAGRYMVLMPNNPKAGGISRRIEGDDRSELRDALAELN 160
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G G+ IRT G S EELQ DL+ LL W I A + P+LL++
Sbjct: 161 IPDGMGVIIRTAGVGRSSEELQWDLDYLLQLWDAIETAAN----------DNKSPVLLYQ 210
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + V ++++D P Y + + ++ + P R++ Y+ IPLF++F
Sbjct: 211 ESDVIIRSIRDYLRDDVDQVLIDDPVAYKQASDFVSMVMPKYSQRIKFYEDPIPLFNRFQ 270
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
+E +I S+ V LP+GGS+VI+ TEALVSID+N GS E+ L+ NL AA+
Sbjct: 271 VEGQIETAFSREVRLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEQTALNTNLEAAE 328
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG+IV+DFIDM N+R V ++ A+E DR+ V+V +SR GL+E++
Sbjct: 329 EIARQLRLRDMGGLIVIDFIDMNASKNQRAVENRIRDALEIDRARVQVGRISRFGLLEMS 388
Query: 595 RKR 597
R+R
Sbjct: 389 RQR 391
>gi|421522318|ref|ZP_15968960.1| ribonuclease E [Pseudomonas putida LS46]
gi|402753937|gb|EJX14429.1| ribonuclease E [Pseudomonas putida LS46]
Length = 1088
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 155 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 60
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 61 RHGFLPLKEISREYF 75
>gi|422649107|ref|ZP_16712219.1| ribonuclease E [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330962633|gb|EGH62893.1| ribonuclease E [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 1101
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|339486465|ref|YP_004700993.1| ribonuclease [Pseudomonas putida S16]
gi|338837308|gb|AEJ12113.1| ribonuclease [Pseudomonas putida S16]
Length = 1060
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 36 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 79
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 80 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 139
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + A P L+++
Sbjct: 140 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASQ----------DRAAPFLIYQ 189
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 190 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 249
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 250 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 307
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 308 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 367
Query: 595 RKR 597
R+R
Sbjct: 368 RQR 370
>gi|291439681|ref|ZP_06579071.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291342576|gb|EFE69532.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 1015
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 190/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 287 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 346
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L W++I + +K+ G P
Sbjct: 347 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQGQWEDIQKKSKN----------GNAPT 396
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV P + + Y+ +APDL DR++ + + +F
Sbjct: 397 LLYGEPDMTVRVVRDIFNEDFSKVVVSGPDAWETIHGYVSHVAPDLADRLQKWTSEVDVF 456
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 457 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 515
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 516 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 575
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 576 VQMTRKR 582
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 211 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 264
>gi|422676159|ref|ZP_16735493.1| ribonuclease E [Pseudomonas syringae pv. aceris str. M302273]
gi|330973867|gb|EGH73933.1| ribonuclease E [Pseudomonas syringae pv. aceris str. M302273]
Length = 1101
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 208/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT++ L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|71734954|ref|YP_273875.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555507|gb|AAZ34718.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 1129
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 401
Query: 595 RKR 597
R+R
Sbjct: 402 RQR 404
>gi|386013236|ref|YP_005931513.1| Ribonuclease [Pseudomonas putida BIRD-1]
gi|313499942|gb|ADR61308.1| Ribonuclease [Pseudomonas putida BIRD-1]
Length = 1095
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 155 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 60
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 61 RHGFLPLKEISREYF 75
>gi|431801443|ref|YP_007228346.1| ribonuclease E [Pseudomonas putida HB3267]
gi|430792208|gb|AGA72403.1| ribonuclease E [Pseudomonas putida HB3267]
Length = 1080
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + A P L+++
Sbjct: 155 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASQ----------DRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|395444680|ref|YP_006384933.1| ribonuclease [Pseudomonas putida ND6]
gi|388558677|gb|AFK67818.1| ribonuclease [Pseudomonas putida ND6]
Length = 1078
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 64 RHGFLPLKEISREYF 78
>gi|447917921|ref|YP_007398489.1| ribonuclease E [Pseudomonas poae RE*1-1-14]
gi|445201784|gb|AGE26993.1| ribonuclease E [Pseudomonas poae RE*1-1-14]
Length = 1049
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|407365685|ref|ZP_11112217.1| ribonuclease E [Pseudomonas mandelii JR-1]
Length = 1068
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|167032491|ref|YP_001667722.1| ribonuclease [Pseudomonas putida GB-1]
gi|166858979|gb|ABY97386.1| ribonuclease, Rne/Rng family [Pseudomonas putida GB-1]
Length = 1086
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
Score = 39.3 bits (90), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F P
Sbjct: 64 RHGFLPLKEISREYFKKAP 82
>gi|148549015|ref|YP_001269117.1| ribonuclease [Pseudomonas putida F1]
gi|148513073|gb|ABQ79933.1| RNAse E [Pseudomonas putida F1]
Length = 1090
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 64 RHGFLPLKEISREYF 78
>gi|26988635|ref|NP_744060.1| Rne/Rng family ribonuclease [Pseudomonas putida KT2440]
gi|24983416|gb|AAN67524.1|AE016381_1 ribonuclease E [Pseudomonas putida KT2440]
Length = 1091
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|440741937|ref|ZP_20921268.1| ribonuclease E [Pseudomonas syringae BRIP39023]
gi|440378274|gb|ELQ14899.1| ribonuclease E [Pseudomonas syringae BRIP39023]
Length = 1100
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|397694050|ref|YP_006531931.1| ribonuclease [Pseudomonas putida DOT-T1E]
gi|397330780|gb|AFO47139.1| ribonuclease [Pseudomonas putida DOT-T1E]
Length = 1088
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 155 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 60
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 61 RHGFLPLKEISREYF 75
>gi|398941145|ref|ZP_10669678.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM41(2012)]
gi|398161964|gb|EJM50177.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM41(2012)]
Length = 1076
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|325981764|ref|YP_004294166.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212]
gi|325531283|gb|ADZ26004.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212]
Length = 837
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ V K N+ ++I EP EA F D+ E +GF P K P
Sbjct: 26 DLDIESVSKEQRKSNIYKAVITRVEPSLEAAFVDY-------GCERHGFLPFKEIAPSCF 78
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
S TP + +Q+G ++IVQV K+ GTKG LT Y L R+ +LI
Sbjct: 79 SESG---------TPNARIQDLLQEGQELIVQVDKDERGTKGAALTTYISLAGRYLVLIP 129
Query: 328 TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + GVSR+ITG ER L+ VIAK P G + RT G S EELQ DL L W
Sbjct: 130 NNSNSGGVSRRITGEERNDLREVIAKLEIPTGMSIIARTAGIGRSKEELQWDLNYLTQLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I E A + +GV L+++ + ++DYF++++ ++++DS Y + +
Sbjct: 190 YAIEEAANN-----QDGV-----FLIYQESSLVIRAIRDYFSQEIGEILIDSRDIYEQAS 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P DR++ Y +PLF +F IE +I S++V LP+GG++VI+ TEALVS+
Sbjct: 240 QFMAHVMPANVDRLKFYHDDVPLFSRFQIEHQIETAYSRQVSLPSGGAIVIDHTEALVSV 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN + G E L+ NL AA +IAR+LRLRD+GG+IV+DFIDM N+R V
Sbjct: 300 DVNSARAI--RGLDIEHTALNTNLEAADEIARQLRLRDLGGLIVIDFIDMDVQRNQREVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+ +A+ +DR+ ++V ++SR GL+E++R+R
Sbjct: 358 ARLHEALRQDRARIQVGKISRFGLLELSRQR 388
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A++ + L++L +E V + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQPEELRVAIVNGQTLIDLDIESVSKEQRKSNIYKAVITRVEPSLEAAFVDYGCE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|398885314|ref|ZP_10640230.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM60]
gi|398192690|gb|EJM79827.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM60]
Length = 1072
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|257487559|ref|ZP_05641600.1| ribonuclease, Rne/Rng family protein, partial [Pseudomonas syringae
pv. tabaci str. ATCC 11528]
Length = 700
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|408480368|ref|ZP_11186587.1| ribonuclease E [Pseudomonas sp. R81]
Length = 1048
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|289649338|ref|ZP_06480681.1| ribonuclease E [Pseudomonas syringae pv. aesculi str. 2250]
Length = 1094
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|424066713|ref|ZP_17804176.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|408002002|gb|EKG42272.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
Length = 1106
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|398854365|ref|ZP_10610932.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM80]
gi|398236176|gb|EJN21970.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM80]
Length = 1078
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|398995351|ref|ZP_10698236.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM21]
gi|398130147|gb|EJM19495.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM21]
Length = 1060
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|395796676|ref|ZP_10475971.1| ribonuclease E [Pseudomonas sp. Ag1]
gi|395339240|gb|EJF71086.1| ribonuclease E [Pseudomonas sp. Ag1]
Length = 1081
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKSPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|66044883|ref|YP_234724.1| ribonuclease E and G [Pseudomonas syringae pv. syringae B728a]
gi|63255590|gb|AAY36686.1| RNAse E [Pseudomonas syringae pv. syringae B728a]
Length = 1120
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 401
Query: 595 RKR 597
R+R
Sbjct: 402 RQR 404
>gi|325275826|ref|ZP_08141691.1| ribonuclease E [Pseudomonas sp. TJI-51]
gi|324099045|gb|EGB97026.1| ribonuclease E [Pseudomonas sp. TJI-51]
Length = 510
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K E G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKTPEGRVNIKEVLSE--------GQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 155 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|398878490|ref|ZP_10633611.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM67]
gi|398200113|gb|EJM87040.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM67]
Length = 1072
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|388548081|ref|ZP_10151336.1| ribonuclease E [Pseudomonas sp. M47T1]
gi|388273797|gb|EIK93404.1| ribonuclease E [Pseudomonas sp. M47T1]
Length = 1126
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKSPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|387895158|ref|YP_006325455.1| ribonuclease E [Pseudomonas fluorescens A506]
gi|387160236|gb|AFJ55435.1| ribonuclease E [Pseudomonas fluorescens A506]
Length = 1055
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|388468708|ref|ZP_10142918.1| ribonuclease E [Pseudomonas synxantha BG33R]
gi|388012288|gb|EIK73475.1| ribonuclease E [Pseudomonas synxantha BG33R]
Length = 1052
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|422299571|ref|ZP_16387133.1| ribonuclease, Rne/Rng family protein [Pseudomonas avellanae BPIC
631]
gi|407988490|gb|EKG31016.1| ribonuclease, Rne/Rng family protein [Pseudomonas avellanae BPIC
631]
Length = 1100
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPDGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|404400398|ref|ZP_10991982.1| ribonuclease E [Pseudomonas fuscovaginae UPB0736]
Length = 1106
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|423690400|ref|ZP_17664920.1| ribonuclease E [Pseudomonas fluorescens SS101]
gi|388002630|gb|EIK63959.1| ribonuclease E [Pseudomonas fluorescens SS101]
Length = 1050
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|422584463|ref|ZP_16659571.1| ribonuclease E, partial [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330869278|gb|EGH03987.1| ribonuclease E [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 685
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|312962574|ref|ZP_07777064.1| hypothetical protein PFWH6_4495 [Pseudomonas fluorescens WH6]
gi|311283154|gb|EFQ61745.1| hypothetical protein PFWH6_4495 [Pseudomonas fluorescens WH6]
Length = 1058
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 401
Query: 595 RKR 597
R+R
Sbjct: 402 RQR 404
>gi|302187287|ref|ZP_07263960.1| ribonuclease E [Pseudomonas syringae pv. syringae 642]
Length = 1106
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|440719694|ref|ZP_20900118.1| ribonuclease E [Pseudomonas syringae BRIP34876]
gi|440728804|ref|ZP_20909006.1| ribonuclease E [Pseudomonas syringae BRIP34881]
gi|440360587|gb|ELP97850.1| ribonuclease E [Pseudomonas syringae BRIP34881]
gi|440367340|gb|ELQ04405.1| ribonuclease E [Pseudomonas syringae BRIP34876]
Length = 1103
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|424071362|ref|ZP_17808788.1| ribonuclease E and G [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407998971|gb|EKG39365.1| ribonuclease E and G [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 1106
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|398906828|ref|ZP_10653636.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM50]
gi|398172451|gb|EJM60315.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM50]
Length = 1063
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|386287785|ref|ZP_10064956.1| ribonuclease, Rne/Rng family protein [gamma proteobacterium BDW918]
gi|385279295|gb|EIF43236.1| ribonuclease, Rne/Rng family protein [gamma proteobacterium BDW918]
Length = 937
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 211/377 (55%), Gaps = 28/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
NV I EP EA F DF E +GF P K E+ + +P +
Sbjct: 40 NVYKGTITRVEPSLEAAFVDF-------GAERHGFLPLK-EISKEYFYRNPADGSGGRA- 90
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
K V++GT+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G
Sbjct: 91 ---KIKDLVKEGTQVIVQVEKEERGNKGAALTTFISLAGRYMVLMPNNPRAGGISRRIEG 147
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT L+ ++ P+ G+ +RT G S EELQ DL+ LL W I + ++
Sbjct: 148 DERTELRDALNSINIPDAMGVIVRTAGVGRSSEELQWDLDYLLHLWSAIKQASE------ 201
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
E PIL+ + + ++DY + + ++++DS +Y+E +++ + P ++
Sbjct: 202 ----ERKAPILILQESNVIIRAIRDYLRDDIDQVLIDSEESYNEAMHFVEQVMPHFKSKI 257
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY ++PLF+++ IE +I + + V LP+GGS+VI+ TEALVSID+N G
Sbjct: 258 RLYKDQVPLFNRYQIESQIESAFQREVQLPSGGSIVIDPTEALVSIDINSARAT--KGGD 315
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA +IAR+LRLRDIGG+IVVDFIDM N+R V V+ A+E DR+ +
Sbjct: 316 IEETALQTNLEAADEIARQLRLRDIGGLIVVDFIDMLAAKNQREVENRVRDAMEPDRARI 375
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 376 QIGRISRFGLLEMSRQR 392
>gi|229592116|ref|YP_002874235.1| putative ribonuclease E [Pseudomonas fluorescens SBW25]
gi|229363982|emb|CAY51521.1| putative ribonuclease E [Pseudomonas fluorescens SBW25]
Length = 1075
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 401
Query: 595 RKR 597
R+R
Sbjct: 402 RQR 404
>gi|398841801|ref|ZP_10599009.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM102]
gi|398107458|gb|EJL97457.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM102]
Length = 1060
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|395651256|ref|ZP_10439106.1| ribonuclease E [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 1053
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|421141456|ref|ZP_15601441.1| ribonuclease, Rne/Rng family protein [Pseudomonas fluorescens
BBc6R8]
gi|404507465|gb|EKA21450.1| ribonuclease, Rne/Rng family protein [Pseudomonas fluorescens
BBc6R8]
Length = 1084
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKSPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|443644834|ref|ZP_21128684.1| Ribonuclease E [Pseudomonas syringae pv. syringae B64]
gi|443284851|gb|ELS43856.1| Ribonuclease E [Pseudomonas syringae pv. syringae B64]
Length = 1104
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|320102650|ref|YP_004178241.1| ribonuclease, Rne/Rng family [Isosphaera pallida ATCC 43644]
gi|319749932|gb|ADV61692.1| ribonuclease, Rne/Rng family [Isosphaera pallida ATCC 43644]
Length = 1473
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 189/308 (61%), Gaps = 14/308 (4%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVI 350
++G +VIVQV+KE +G KGPTL+ Y + R+ +L+ +R+GVSRKI +R +LK I
Sbjct: 1027 RRGDEVIVQVIKESIGNKGPTLSTYISIPGRYLVLMPGLNRVGVSRKINDEAQRRKLKEI 1086
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ L P G +RT + +EL +D+ LL WK I+ K P
Sbjct: 1087 MEELNPPNNLGFIVRTAGVDRTKKELARDMAYLLRLWKAILRRIKRTQ----------AP 1136
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
++++ ++D F++ + + +D + Y +LQ++ P DR++LY+ + PL
Sbjct: 1137 AVIYQESDMITRTIRDVFSDDIDTIWIDERQAYEHAREFLQNVMPRYVDRLKLYEGKTPL 1196
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + +EEEI + K VPLP GGS++IE TEALV+IDVN G+ F + EK + N
Sbjct: 1197 FHLYGLEEEIQRIHRKHVPLPGGGSIIIEPTEALVAIDVNSGN--FRVENDAEKTAYETN 1254
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AAK+IAR+LRLRD+GG+I+ DFIDM ++ ++R V +++A++RDR+ KV +S+ G
Sbjct: 1255 LRAAKEIARQLRLRDLGGVIINDFIDMREEKHRRGVERALREAIKRDRARTKVLRMSQFG 1314
Query: 590 LMEITRKR 597
++E+TR+R
Sbjct: 1315 IIEMTRQR 1322
>gi|422619791|ref|ZP_16688478.1| ribonuclease E [Pseudomonas syringae pv. japonica str. M301072]
gi|330900158|gb|EGH31577.1| ribonuclease E [Pseudomonas syringae pv. japonica str. M301072]
Length = 860
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|289624527|ref|ZP_06457481.1| ribonuclease E, partial [Pseudomonas syringae pv. aesculi str.
NCPPB 3681]
Length = 693
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|402698989|ref|ZP_10846968.1| ribonuclease E [Pseudomonas fragi A22]
Length = 1072
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|59712355|ref|YP_205131.1| hypothetical protein VF_1748 [Vibrio fischeri ES114]
gi|59480456|gb|AAW86243.1| rne [Vibrio fischeri ES114]
Length = 994
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 216/394 (54%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + + PQG + P K L+ +G +
Sbjct: 54 EAAFVDY-GADRH------GFLPLK----EIAKEYFPQGY-TYQGRPNIKDVLK--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W+ + +HA + A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWEAV-KHASESNQA---------PFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DSP+ + ++Q I PD RV+LY+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPDFLSRVKLYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFEREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|197335030|ref|YP_002156570.1| ribonuclease E [Vibrio fischeri MJ11]
gi|197316520|gb|ACH65967.1| ribonuclease E [Vibrio fischeri MJ11]
Length = 995
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 216/394 (54%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + + PQG + P K L+ +G +
Sbjct: 54 EAAFVDY-GADRH------GFLPLK----EIAKEYFPQGY-TYQGRPNIKDVLK--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W+ + +HA + A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWEAV-KHASESNQA---------PFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DSP+ + ++Q I PD RV+LY+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPDFLSRVKLYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFEREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|398856934|ref|ZP_10612645.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM79]
gi|398242003|gb|EJN27634.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM79]
Length = 1063
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|92113716|ref|YP_573644.1| ribonuclease E [Chromohalobacter salexigens DSM 3043]
gi|91796806|gb|ABE58945.1| RNAse E [Chromohalobacter salexigens DSM 3043]
Length = 1175
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 205/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + T P G + K +++G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFTKEPSGRPNIKEV--------LKEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G +R +LK + +
Sbjct: 98 VIVQVDKEERGNKGAALTTFISLAGRFLVLMPNNPRAGGISRRIEGDDRAQLKDAMGQLT 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ G+ +RT G S EELQ D++ L+ W+ I E A + + P L++R
Sbjct: 158 VPDKMGVIVRTAGIGRSPEELQWDMDYLVQVWEAITEEAG----------KRSAPFLIYR 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DSP + E +++ + P ++++LY +PLF +F
Sbjct: 208 ESNVIIRAMRDYLRHDIGEVLIDSPEVHEEALHFIRQVMPSYQNKIKLYADDVPLFSRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GG++VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 268 IESQIETAYQREVKLPSGGAVVIDHTEALVSIDINSARAT--RGSDIEETALQTNLEAAD 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N+R V V+ A++ DR+ V++ +SR GLME++
Sbjct: 326 EIARQLRLRDIGGLVVIDFIDMTPAKNQREVENRVRDALKLDRARVQIGRISRFGLMEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|423686524|ref|ZP_17661332.1| ribonuclease E [Vibrio fischeri SR5]
gi|371494592|gb|EHN70190.1| ribonuclease E [Vibrio fischeri SR5]
Length = 991
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 216/394 (54%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + + PQG + P K L+ +G +
Sbjct: 51 EAAFVDY-GADRH------GFLPLK----EIAKEYFPQGY-TYQGRPNIKDVLK--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W+ + +HA + A P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWEAV-KHASESNQA---------PFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DSP+ + ++Q I PD RV+LY+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPDFLSRVKLYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFEREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDRARVQIGRISRFGLLEMS 384
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 385 RQRL---------SPS-----LAEASHHICPRCT 404
>gi|422664802|ref|ZP_16724675.1| ribonuclease E [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|330975221|gb|EGH75287.1| ribonuclease E [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 1098
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|395494531|ref|ZP_10426110.1| ribonuclease E [Pseudomonas sp. PAMC 25886]
Length = 1081
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|398869360|ref|ZP_10624734.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM78]
gi|398230617|gb|EJN16633.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM78]
Length = 1087
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKTPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|398872454|ref|ZP_10627745.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM74]
gi|398202624|gb|EJM89464.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM74]
Length = 709
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|83644954|ref|YP_433389.1| ribonucleases G and E [Hahella chejuensis KCTC 2396]
gi|83632997|gb|ABC28964.1| Ribonucleases G and E [Hahella chejuensis KCTC 2396]
Length = 1056
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 212/365 (58%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F DF E +GF P K E+ + S PQ G K ++ +Q+G
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKSQPQK--------GGKMNIKDLLQEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
++I+QV KE G KG LT + L R+ +L+ + R G +SR+I G +R +LK
Sbjct: 98 QEIIIQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDDRDQLKDAMSG 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L P+ GL IRT G S +ELQ+DL+ LL W +I HA + A P L+
Sbjct: 158 LTVPKDMGLIIRTAGVGRSSKELQRDLDYLLQFWDSIR-HASDSKPA---------PFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
++ + +DY + + ++++D P+ + + ++++ + P+ +R++LY IPLF++
Sbjct: 208 YQESNVVIRATRDYLRQDIGEVLIDHPQVHQDALNFVKAVMPNFENRIKLYQDDIPLFNR 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL A
Sbjct: 268 YQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRDIGG+IV+DFIDM + N+R V +K+A+E DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDIGGLIVIDFIDMTPNKNQREVENRLKEALELDRARVQIGKISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKH-YREPFIFPP 155
R + +K RE F P
Sbjct: 64 RHGFLPLKEISREYFKSQP 82
>gi|398973234|ref|ZP_10684236.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM25]
gi|398143208|gb|EJM32087.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM25]
Length = 1081
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|398988282|ref|ZP_10692329.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM24]
gi|399011007|ref|ZP_10713340.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM16]
gi|398118345|gb|EJM08076.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM16]
gi|398149780|gb|EJM38415.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM24]
Length = 1073
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|398968999|ref|ZP_10682646.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM30]
gi|398142906|gb|EJM31793.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM30]
Length = 1077
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|343496517|ref|ZP_08734613.1| ribonuclease E [Vibrio nigripulchritudo ATCC 27043]
gi|342821130|gb|EGU55924.1| ribonuclease E [Vibrio nigripulchritudo ATCC 27043]
Length = 991
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 206/363 (56%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K E+ D P+G + P K LQ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIAKDYF---PEGY-TYQGRPSIKEVLQ--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I E + + A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKEASDA----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKQHIQLVRPDFINRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|77460387|ref|YP_349894.1| RNAse E [Pseudomonas fluorescens Pf0-1]
gi|77384390|gb|ABA75903.1| putative ribonuclease E [Pseudomonas fluorescens Pf0-1]
Length = 1082
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|209695669|ref|YP_002263598.1| ribonuclease E [Aliivibrio salmonicida LFI1238]
gi|208009621|emb|CAQ79917.1| ribonuclease E [Aliivibrio salmonicida LFI1238]
Length = 1015
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 216/394 (54%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + + PQG + P K L+ +G +
Sbjct: 54 EAAFVDY-GADRH------GFLPLK----EIAKEYFPQGY-TYQGRPNIKDVLK--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W+ + +HA + A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWEAV-KHASESNQA---------PFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DSP+ + ++Q I PD RV+LY+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPDFLSRVKLYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFDREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|346642834|ref|YP_258907.2| ribonuclease E [Pseudomonas protegens Pf-5]
gi|341579978|gb|AAY91076.2| ribonuclease E [Pseudomonas protegens Pf-5]
Length = 1071
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|424924324|ref|ZP_18347685.1| ribonuclease [Pseudomonas fluorescens R124]
gi|404305484|gb|EJZ59446.1| ribonuclease [Pseudomonas fluorescens R124]
Length = 1078
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|423094246|ref|ZP_17082042.1| ribonuclease E [Pseudomonas fluorescens Q2-87]
gi|397888936|gb|EJL05419.1| ribonuclease E [Pseudomonas fluorescens Q2-87]
Length = 1073
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|378952063|ref|YP_005209551.1| ribonuclease E [Pseudomonas fluorescens F113]
gi|359762077|gb|AEV64156.1| Ribonuclease E [Pseudomonas fluorescens F113]
Length = 1060
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|423698562|ref|ZP_17673052.1| ribonuclease E [Pseudomonas fluorescens Q8r1-96]
gi|388004933|gb|EIK66200.1| ribonuclease E [Pseudomonas fluorescens Q8r1-96]
Length = 1065
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|409200239|ref|ZP_11228442.1| RNase E [Pseudoalteromonas flavipulchra JG1]
Length = 1177
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 184/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
+++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ER LK
Sbjct: 94 IKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERIELKE 153
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+++ P+G GL +RT G S EEL+ DL+ LL W I A S G
Sbjct: 154 ALSRLNVPKGMGLIVRTAGVGKSFEELEYDLKALLVHWDAIQNAANS----------GKA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD +RV+LY +P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFINRVKLYQNDVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K+AV DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKEAVRTDRARVQIGKISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEIAKTY-FP 79
>gi|30249428|ref|NP_841498.1| ribonuclease G and E [Nitrosomonas europaea ATCC 19718]
gi|30138791|emb|CAD85368.1| Ribonucleases G and E [Nitrosomonas europaea ATCC 19718]
Length = 853
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 216/377 (57%), Gaps = 31/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ + + EP EA F D+ G H GF P K P T + T S H
Sbjct: 40 NIYKAAVTRLEPSLEAAFVDYGAGRH-------GFLPYKEIAP----TCFDRNTDWSGH- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV K+ G KG LT Y L R+ +L+ + + G +SR+++
Sbjct: 88 ---RVADLLREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSA 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ + LQ PEG + RT G + EELQ DL L+ W+ I E A +
Sbjct: 145 EERAELREVINNLQVPEGMSIIARTAGIGRNEEELQWDLNYLVQLWRAIEEAASN----- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
++GV L+++ + ++DYF+ ++ ++++D+P Y + ++ ++ P DR+
Sbjct: 200 EKGV-----FLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAYQFMANVMPANVDRL 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY IPLF +F IE +I S++V LP+GGS+VI+ TEALVSIDVN + GS
Sbjct: 255 KLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDVNSARAI--RGSD 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E L+ NL AA +IAR+LRLRD+GG++VVDFIDM N+R V + KA+ DR+ V
Sbjct: 313 IETTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVESSLLKALRLDRARV 372
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GL+E++R+R
Sbjct: 373 QIGKISRFGLLELSRQR 389
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + + ++Y VT+L P++ AFV+ G
Sbjct: 4 MLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYGAG 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPYK 71
>gi|330811002|ref|YP_004355464.1| ribonuclease E [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327379110|gb|AEA70460.1| ribonuclease E [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 1062
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|329894957|ref|ZP_08270756.1| Ribonuclease E [gamma proteobacterium IMCC3088]
gi|328922686|gb|EGG30021.1| Ribonuclease E [gamma proteobacterium IMCC3088]
Length = 883
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 209/363 (57%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K P+ +K K K V++GT+
Sbjct: 54 EAAFVDF-------GAERHGFLPLKEIAPE-------YYSKKGKAGDSSKIKDLVKEGTE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
+I+QV KE G KG +T+Y L R+ +L+ + + G +SR+I G +R++L+ I + +
Sbjct: 100 IIIQVDKEERGNKGAAITSYISLAGRYMVLMPNNPKAGGISRRIEGDDRSQLRDAINELV 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G G+ +RT G S EELQ DL L+ W+ I + AADE P LL +
Sbjct: 160 IPDGMGVIVRTAGVGRSSEELQWDLNYLVQLWEAITK-------AADEF---RAPTLLFQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ V+DY + + ++++DS + E + ++ + P DR++LY+ IP+F++F
Sbjct: 210 ESNVIVRAVRDYLRDDIDQVLIDSTEAHREASDFVGLVMPQYRDRIKLYEDPIPMFNRFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA
Sbjct: 270 IEAQIETAFQREVRLPSGGSIVIDPTEALVSIDINSAKAT--RGGDIEETALQTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM N+RLV ++ A+ DR+ V+V ++SR GL+E++
Sbjct: 328 EIARQLRLRDMGGLVVIDFIDMLASKNQRLVENRIRDALAIDRARVQVGKISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|84498597|ref|ZP_00997360.1| hypothetical protein JNB_20433 [Janibacter sp. HTCC2649]
gi|84381130|gb|EAP97015.1| hypothetical protein JNB_20433 [Janibacter sp. HTCC2649]
Length = 1003
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 189/304 (62%), Gaps = 3/304 (0%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I K
Sbjct: 476 GDTVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPEGSMTGISRKLPDTERARLKAILKE 535
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ PE G+ +RT A G S EEL+ D+E L W+ I + K AA ++ + G P+LLH
Sbjct: 536 VVPEHAGVIVRTAAEGASEEELRADVERLTKAWEKIQQ--KVAAASSKKAGSGGAPVLLH 593
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
T+ +++D F E +++V + + EV+ Y++D+APDL R+ + LF
Sbjct: 594 GEADLTVRVIRDVFTEDFSELIVSGDQAWAEVSGYVEDVAPDLAKRLTHWTSEEDLFSHH 653
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
++E+I+ + ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + N+ AA
Sbjct: 654 RVDEQISKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKNNIEAA 712
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 713 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVVRRLLECLGRDRTKHQVAEVTSLGLVQM 772
Query: 594 TRKR 597
TRKR
Sbjct: 773 TRKR 776
>gi|304312937|ref|YP_003812535.1| ribonuclease E (RNase E) [gamma proteobacterium HdN1]
gi|301798670|emb|CBL46902.1| Ribonuclease E (RNase E) [gamma proteobacterium HdN1]
Length = 1015
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 206/364 (56%), Gaps = 29/364 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQK-GT 295
EA F DF D H GF P K E+ D +P K G T V K G
Sbjct: 54 EAAFVDF-GADRH------GFLPLK-EISRDYFVRNP------KDIQGRYTVKDVLKEGQ 99
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+V+VQV KE GTKG L+ + L R+ +L+ + R G +SR+I G ER+ LK I L
Sbjct: 100 EVVVQVGKEERGTKGAALSTFISLAGRYLVLMPNNPRAGGISRRIDGDERSDLKEIMNAL 159
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
PE G+ IRT G S EELQ DL+ LL W +I + + P L++
Sbjct: 160 TIPEDMGMIIRTAGMGRSAEELQWDLDYLLQLWASITTAS----------TQRQAPFLIY 209
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++D+P + + +++ + P +++LY +PLF+++
Sbjct: 210 QESNVIIRTIRDYLRQDIGEVIIDTPEVHKDALGFVRQVMPQYESKIKLYKDTVPLFNRY 269
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L+ NL AA
Sbjct: 270 QIESQIEAAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALNTNLEAA 327
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IV+DFIDM N+R V +K+A++ DR+ ++ +SR GLME+
Sbjct: 328 EEIARQLRLRDIGGLIVIDFIDMNQQKNQREVEHRLKEALDIDRARIQTGRISRFGLMEL 387
Query: 594 TRKR 597
+R+R
Sbjct: 388 SRQR 391
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATHPEEFRVALVDGQKLYDLDIEHRTREQKKANIYKGRITRLEPSLEAAFVDFGAD 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K R+ F+ P
Sbjct: 64 RHGFLPLKEISRDYFVRNP 82
>gi|326440951|ref|ZP_08215685.1| ribonuclease E [Streptomyces clavuligerus ATCC 27064]
Length = 1372
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 189/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 796 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 855
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L + W +I + AKS G+ P
Sbjct: 856 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKS----------GSAPT 905
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 906 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSEVDVF 965
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 966 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 1024
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1025 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 1084
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1085 VQMTRKR 1091
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 720 QIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 773
>gi|383936428|ref|ZP_09989854.1| ribonuclease E [Rheinheimera nanhaiensis E407-8]
gi|383702492|dbj|GAB59945.1| ribonuclease E [Rheinheimera nanhaiensis E407-8]
Length = 1023
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 180/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERQELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G GL +RT G S EEL DL+ LL W I E A+ +
Sbjct: 151 SLGQLQMPDGMGLIVRTAGVGKSFEELDYDLKALLKHWSAITEEAQ----------KRPS 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY V ++++D+PR + E Y+Q PD RV+LY +P
Sbjct: 201 PFLIHQESNVVFRAIRDYLRRDVGEILIDNPRIFEEAKVYIQQFRPDFAHRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ +
Sbjct: 261 LFMHFQIETQIESAFRREVRLPSGGSIVIDSTEALTAIDINSSKAT--KGGDIEETAFNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV+ DR+ V++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLKDAVKHDRARVQIGRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|386866506|ref|YP_006279500.1| ribonuclease G [Bifidobacterium animalis subsp. animalis ATCC
25527]
gi|385700589|gb|AFI62537.1| ribonuclease G [Bifidobacterium animalis subsp. animalis ATCC
25527]
Length = 1038
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 190/313 (60%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER RLK
Sbjct: 570 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERNRLK 629
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLEGL + W I +E + G
Sbjct: 630 SIVSKIAPKDMGVIIRTAAEGASEEAIAKDLEGLTNQWAEIQRK-------REEFLHGKR 682
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-- 466
P LL + +V+D FN+ KM+V+ YH + YL +APDLC+++E +D
Sbjct: 683 PKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLDHMAPDLCNKLERWDPEEH 742
Query: 467 --IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 743 GGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 801
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 802 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 861
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 862 VTSLGLVQMTRKR 874
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 496 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 549
>gi|104780775|ref|YP_607273.1| ribonuclease E Rne [Pseudomonas entomophila L48]
gi|95109762|emb|CAK14467.1| putative ribonuclease E Rne [Pseudomonas entomophila L48]
Length = 1075
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKPPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASQ----------DRVAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F PP
Sbjct: 64 RHGFLPLKEISREYFKKPP 82
>gi|307544579|ref|YP_003897058.1| ribonuclease E [Halomonas elongata DSM 2581]
gi|307216603|emb|CBV41873.1| ribonuclease, Rne/Rng family [Halomonas elongata DSM 2581]
Length = 1179
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 202/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K EV D P G K +++G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EVSRDYFIKEPSGRPSIKEV--------LKEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G ER +LK + +
Sbjct: 98 VIVQVDKEERGNKGAALTTFISLAGRFLVLMPNNPRAGGISRRIEGEERAQLKEAMGQLT 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ GL +RT G S EELQ DL+ L+ W++I E + P L++R
Sbjct: 158 VPDKMGLIVRTAGIGRSPEELQWDLDYLVQVWESIT----------GEAGKRPAPFLIYR 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS + E ++++ + P +++ Y +PLF +F
Sbjct: 208 ESNVIIRAMRDYLRQDIGEVLIDSEEVHQEALTFIRQVMPSYQQKIKRYADEVPLFSRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 268 IESQIETAYEREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQTNLEAAD 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM+ N+R V V+ A++ DR+ V++ +SR GLME++
Sbjct: 326 EIARQLRLRDIGGLVVIDFIDMSPARNQREVENRVRDALKIDRARVQIGRISRFGLMEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKH-YREPFIFPP 155
R + +K R+ FI P
Sbjct: 64 RHGFLPLKEVSRDYFIKEP 82
>gi|443293532|ref|ZP_21032626.1| Ribonuclease G [Micromonospora lupini str. Lupac 08]
gi|385883390|emb|CCH20777.1| Ribonuclease G [Micromonospora lupini str. Lupac 08]
Length = 1031
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 196/307 (63%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + + G+SRK+ ER RL+ +
Sbjct: 573 LRSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPNGNASGISRKLPDTERKRLRDV 632
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L P+G G+ +RT A G S +EL +D++ L + W++I AK+A EG P+
Sbjct: 633 LKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDI--QAKAA--------EGGAPV 682
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +V+D FNE +++V++ ++Y V SYL ++PDL DRV Y +F
Sbjct: 683 LLYEEPDLVIRVVRDLFNEDFRELVIEGEQSYGMVESYLSHVSPDLVDRVRRYVGTSDVF 742
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ I+E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 743 AEYRIDEQIIKGLDRKVFLPSGGSLVIDKTEAMTVVDVNTGK-YTGSGGNLEETVTRNNL 801
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 802 EAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 861
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 862 VQMTRKR 868
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR IAVLED LVE + S +VYLG V
Sbjct: 470 ILSESEFLARREAVDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQ 529
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV++G R +++
Sbjct: 530 NVLPSMEAAFVDVGRGRNAVL 550
>gi|289671957|ref|ZP_06492847.1| ribonuclease E, partial [Pseudomonas syringae pv. syringae FF5]
Length = 746
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 202/347 (58%), Gaps = 23/347 (6%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E +GF P K E+ + P+G + K + +G +VIVQV KE G KG
Sbjct: 1 ERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQEVIVQVEKEERGNKGAA 51
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGH 370
LT + L R+ +L+ + R G +SR+I G ER L+ + + P GL +RT G
Sbjct: 52 LTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGR 111
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
S EE+Q DL+ LL W I E + ++ + P L+++ + ++DY +
Sbjct: 112 SSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQESNVIIRAIRDYLRQD 161
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++DS E ++++ + P +++LY+ +PLF++F IE +I + V LP
Sbjct: 162 IGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELP 221
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GGS+VI+ TEALVSID+N GS E+ L NL AA++IAR+LRLRDIGG+IV
Sbjct: 222 SGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAEEIARQLRLRDIGGLIV 279
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++R+R
Sbjct: 280 IDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMSRQR 326
>gi|297199646|ref|ZP_06917043.1| predicted protein [Streptomyces sviceus ATCC 29083]
gi|297147454|gb|EDY57460.2| predicted protein [Streptomyces sviceus ATCC 29083]
Length = 1115
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 189/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 403 LKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 462
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L W++I + AKS G P
Sbjct: 463 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEDIQKKAKS----------GNAPT 512
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL DR++ + + +F
Sbjct: 513 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEGWETIHGYVSHVAPDLADRLQRWTSEVDVF 572
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 573 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 631
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 632 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 691
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 692 VQMTRKR 698
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKL 123
+ +++ V V+++ S Q I VLED LVE + ++ +VYLG V +
Sbjct: 303 EAEFLARREAVERVMVVRQSGERTQ-IGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNV 361
Query: 124 VPNMGGAFVNIGNSRPSLM 142
+P+M AF++IG R +++
Sbjct: 362 LPSMEAAFIDIGKGRNAVL 380
>gi|294812601|ref|ZP_06771244.1| ribonuclease, Rne/Rng family [Streptomyces clavuligerus ATCC 27064]
gi|294325200|gb|EFG06843.1| ribonuclease, Rne/Rng family [Streptomyces clavuligerus ATCC 27064]
Length = 1456
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 189/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 880 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 939
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L + W +I + AKS G+ P
Sbjct: 940 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKS----------GSAPT 989
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 990 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSEVDVF 1049
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 1050 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 1108
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1109 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 1168
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1169 VQMTRKR 1175
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 783 FLARREAVERVMVVRQAGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 841
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 842 MEAAFVDIGKGRNAVL 857
>gi|254392430|ref|ZP_05007611.1| hypothetical protein SSCG_04938 [Streptomyces clavuligerus ATCC
27064]
gi|197706098|gb|EDY51910.1| hypothetical protein SSCG_04938 [Streptomyces clavuligerus ATCC
27064]
Length = 1336
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 189/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 814 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 873
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L + W +I + AKS G+ P
Sbjct: 874 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKS----------GSAPT 923
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 924 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSEVDVF 983
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 984 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 1042
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1043 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 1102
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1103 VQMTRKR 1109
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 717 FLARREAVERVMVVRQAGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 775
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 776 MEAAFVDIGKGRNAVL 791
>gi|406831021|ref|ZP_11090615.1| ribonuclease, Rne/Rng family protein [Schlesneria paludicola DSM
18645]
Length = 532
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 196/326 (60%), Gaps = 16/326 (4%)
Query: 276 TKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRI 333
TK ++ + K +Q +++G++V+VQV+K +G+KGPTL+ Y + R+ +L+ R+
Sbjct: 103 TKFNERSVRNKPQIQDILKRGSEVLVQVIKGAIGSKGPTLSTYISIPGRYLVLMPGLQRV 162
Query: 334 GVSRKITGVE-RTRLKVIAKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391
GVSRKI + R RLK I + L P EG G IRT S +LQ+DL LL WK I+
Sbjct: 163 GVSRKIADDDARKRLKRILRDLSPPEGLGFIIRTAGVDRSQADLQRDLNYLLRLWKVIVS 222
Query: 392 HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQD 451
K P+ ++ ++D + ++ + +D PR Y +++
Sbjct: 223 RVKKFP----------APVDIYEESDMITRTIRDIYTSEIDAIWIDEPRAYERACEFMKI 272
Query: 452 IAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGG 511
+ P DRV LYD R P+F++ +IE+EI + S+ VPL GGS+VI+QTEALV+IDVN G
Sbjct: 273 VLPRHVDRVRLYDGREPIFEQHDIEQEITRIQSRHVPLKGGGSIVIDQTEALVAIDVNSG 332
Query: 512 HGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKK 571
+ F E+ VNL AA++I+R++RLRD+GG+IV DFIDM D+ ++R V +
Sbjct: 333 N--FRMDDDPEENAYQVNLRAAEEISRQIRLRDLGGVIVNDFIDMRDEKHRRGVERALHH 390
Query: 572 AVERDRSMVKVSELSRHGLMEITRKR 597
AV+RDR+ K+ +S GL+E+TR+R
Sbjct: 391 AVKRDRARTKILNISPFGLIEMTRQR 416
>gi|88705137|ref|ZP_01102849.1| ribonuclease E [Congregibacter litoralis KT71]
gi|88700832|gb|EAQ97939.1| ribonuclease E [Congregibacter litoralis KT71]
Length = 1003
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 185/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++GT++IVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R L+
Sbjct: 95 VKEGTRLIVQVDKEERGNKGAALTTFISLPGRYMVLMPNNPRAGGISRRIEGDDRAELRE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G G+ IRT G S EELQ DL LL W+ + + G E
Sbjct: 155 ALSALDIPDGMGVIIRTAGVGRSAEELQWDLNYLLQLWEAVSKA----------GEENRS 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+LL++ + V+DY + V ++++DSP + + ++ + P R++LY+ IP
Sbjct: 205 PVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQAMDFVSMVMPKYQQRIKLYEDNIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF++F IE +I + V LP+GGS+VI+ TEALVSID+N G++ E L
Sbjct: 265 LFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGANIEATALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM N+R V ++ A+ DR+ V+V +SR
Sbjct: 323 NLEAADEVARQLRLRDMGGLIVIDFIDMLAAKNQRAVENRMRDALAIDRARVQVGRISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 43/76 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y+G +T++ P++ AFV+ G
Sbjct: 4 MLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKHYREPFIF 153
R + +K + +
Sbjct: 64 RHGFLSVKEIAREYFY 79
>gi|220934526|ref|YP_002513425.1| ribonuclease E [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995836|gb|ACL72438.1| ribonuclease E [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 938
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 217/382 (56%), Gaps = 39/382 (10%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGT-K 277
NV +++ EP EA F ++ E +GF P ++S +P PQG+ K
Sbjct: 40 NVYKAVVTRVEPSLEAAFVNY-------GAERHGFLPLKEIARSFLPGAGDEDSPQGSIK 92
Query: 278 DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VS 336
D V++G ++IVQV KE G KG LT + L R+ +L+ + R G VS
Sbjct: 93 D-----------LVKEGMELIVQVEKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGVS 141
Query: 337 RKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
R+I G +R+ ++ L+ P+G GL RT G +EELQ DLE L + W I E A
Sbjct: 142 RRIEGEDRSEIREALSQLEVPQGMGLIARTAGVGRGVEELQWDLEYLKTLWAAITEAA-- 199
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
E +G P L+++ + ++D+ + +++VD P Y + ++Q + P+
Sbjct: 200 ------EKRKG--PFLIYQESNVIIRALRDHLRNDIAEIIVDVPAVYQQAQEFMQQVMPN 251
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
+++LY++ +PLF+++ IE +I + V LP+GG++VI+ TEAL+SIDVN
Sbjct: 252 NLRKLKLYEEHVPLFNRYQIESQIEAAFQREVSLPSGGAIVIDHTEALISIDVNSARAT- 310
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
GS E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM N+R V ++ A+E
Sbjct: 311 -KGSDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMGPAKNQREVENRLRDALEM 369
Query: 576 DRSMVKVSELSRHGLMEITRKR 597
DR+ V+V +SR GL+E++R+R
Sbjct: 370 DRARVQVGRISRFGLLEMSRQR 391
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
ILIN++ R+A+++ +KL +L +E + +VY VVT++ P++ AFVN G
Sbjct: 4 ILINATQPEELRVAMVDGQKLYDLDIEVPSREQKKANVYKAVVTRVEPSLEAAFVNYGAE 63
Query: 138 RPSLMDIKHYREPFI 152
R + +K F+
Sbjct: 64 RHGFLPLKEIARSFL 78
>gi|114320586|ref|YP_742269.1| ribonuclease E [Alkalilimnicola ehrlichii MLHE-1]
gi|114226980|gb|ABI56779.1| RNAse E [Alkalilimnicola ehrlichii MLHE-1]
Length = 1073
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 205/347 (59%), Gaps = 20/347 (5%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E +GF P K P + + +G K P + V++G +V+VQV KE GTKG
Sbjct: 63 ERHGFLPFKEIAP----SYYREGLKADGGRPSIRDA--VREGQEVVVQVDKEERGTKGAA 116
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
LT Y L R+ +L+ + R G VSR+I G +R ++ + L PEG GL +RT G
Sbjct: 117 LTTYISLAGRYLVLMPNNPRAGGVSRRIEGSDRAEIREALRQLDVPEGMGLIVRTAGVGR 176
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
++EELQ DL+ LL W I + A++ + P L+++ + ++DY
Sbjct: 177 TVEELQWDLDYLLKLWSAIQKAAEARS----------APFLIYQESDVIIRALRDYLRSD 226
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++D P+ + + +++ + P +++ YD R+PLF ++ IE +I + + V LP
Sbjct: 227 IGEILIDDPQVFEKAVEFVEQVMPYNRQKLKYYDDRVPLFTRYQIESQIESAFQRDVRLP 286
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG++VI+ TEAL+SID+N GS E+ L NL AA +IAR+LRLRD+GG+IV
Sbjct: 287 SGGAIVIDHTEALISIDINSARAT--KGSDIEETALHTNLEAADEIARQLRLRDLGGLIV 344
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+DFIDM + N+R V +++AV+ DR+ V++ +SR GL+E++R+R
Sbjct: 345 IDFIDMGPNRNQREVENRLREAVKADRARVQIGRISRFGLLEMSRQR 391
>gi|119503336|ref|ZP_01625420.1| DNA polymerase III delta prime subunit [marine gamma
proteobacterium HTCC2080]
gi|119460982|gb|EAW42073.1| DNA polymerase III delta prime subunit [marine gamma
proteobacterium HTCC2080]
Length = 973
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 214/379 (56%), Gaps = 33/379 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
NV + I EP EA F DF E +GF P K ++ P+G
Sbjct: 40 NVYKAKITRVEPSLEAAFVDF-------GAERHGFLPLKEIAHQYYRSTAPEGEG----- 87
Query: 283 PGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKI 339
KT ++ +++GT+VIVQV KE GTKG LT Y L R+ +L+ + + G +SR+I
Sbjct: 88 ---KTRIKDVLKEGTEVIVQVDKEERGTKGAALTTYISLAGRYMVLMPNNPKAGGISRRI 144
Query: 340 TGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAAL 398
G +RT L+ L P+G G+ IRT G S EELQ DL+ LL W +I +
Sbjct: 145 EGDDRTELRDALSQLNIPDGMGVIIRTAGVGRSPEELQWDLDYLLQLWSSI-------SS 197
Query: 399 AADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCD 458
A+DE P+LL++ + ++DY + V ++++D + + ++ + P
Sbjct: 198 ASDEN---KAPVLLYQESDVIIRSIRDYLRDDVDQVLIDDKAAWQQAHDFVTMVMPKYAQ 254
Query: 459 RVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHG 518
R+ Y+ PLF++F +E +I + + V LP+GGS+VI+ TEAL+SID+N G
Sbjct: 255 RIRYYEDATPLFNRFQVEGQIESAFQREVRLPSGGSIVIDPTEALISIDINSARAT--KG 312
Query: 519 SSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRS 578
S E+ L NL AA ++AR+LRLRD+GG++V+DFIDM + N+R V ++ A+E DR+
Sbjct: 313 SDIEQTALQTNLEAADEVARQLRLRDMGGLVVIDFIDMNANKNQRAVENRIRDALEVDRA 372
Query: 579 MVKVSELSRHGLMEITRKR 597
V+V +SR GL+E++R+R
Sbjct: 373 RVQVGRISRFGLLEMSRQR 391
>gi|407696564|ref|YP_006821352.1| ribonuclease, Rne/Rng family protein [Alcanivorax dieselolei B5]
gi|407253902|gb|AFT71009.1| Ribonuclease, Rne/Rng family protein [Alcanivorax dieselolei B5]
Length = 1126
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 206/364 (56%), Gaps = 29/364 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQV-QKGT 295
EA F DF E +GF P K S TKD K G V ++G
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-------EISRQYFTKDPKDIQGRINIKDVIKEGQ 96
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK +L
Sbjct: 97 EVIIQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERQQLKEALASL 156
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ +RT G EELQ DL+ LL W +I E ++S P L++
Sbjct: 157 KLPDEMGVIVRTAGLGRGAEELQWDLDYLLKLWDSISEASQSRK----------APFLIY 206
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++DS + + E +++Q + D +++LY++ IPLF +F
Sbjct: 207 QESNVIIRAIRDYLRKDIGEVLIDSEKVFEEAQAFVQQVMADYKHKIKLYNEEIPLFSRF 266
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L NL AA
Sbjct: 267 QIESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALQTNLEAA 324
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
+IAR+LRLRDIGG+IVVDFIDM N+R V ++ A+E DR+ +++ +SR GL+E+
Sbjct: 325 DEIARQLRLRDIGGLIVVDFIDMGPARNQREVENRMRDALEADRARIQLGRISRFGLLEL 384
Query: 594 TRKR 597
+R+R
Sbjct: 385 SRQR 388
>gi|84394339|ref|ZP_00993061.1| ribonuclease E [Vibrio splendidus 12B01]
gi|84375032|gb|EAP91957.1| ribonuclease E [Vibrio splendidus 12B01]
Length = 1061
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 141/394 (35%), Positives = 214/394 (54%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLR--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|399545512|ref|YP_006558820.1| ribonuclease E [Marinobacter sp. BSs20148]
gi|399160844|gb|AFP31407.1| Ribonuclease E [Marinobacter sp. BSs20148]
Length = 1088
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/422 (33%), Positives = 228/422 (54%), Gaps = 47/422 (11%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT Y L R+ +L+ + R G +SR+I G ER +LK
Sbjct: 95 IAEGQEVIVQVDKEERGNKGAALTTYISLAGRYLVLMPNNARAGGISRRIEGEERAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNQVQVPKAMGIIVRTAGIGRNSEELQWDLDYLVQFWEAITQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+P + +V ++++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDAPAVHEDVLNFVRAVMPTFENKIKLYSDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N GH E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRATKGH--DIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRD+GG+IV+DFIDM N+R V ++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQREVENKMREALEIDRARVQVGKISRF 382
Query: 589 GLMEITRKR-------------AMMEQKADPENPKSWPRFILRVDHH------------- 622
GL+E++R+R E + +S I+R+ +
Sbjct: 383 GLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLALSIMRLIYEESSKDKTGEVRAV 442
Query: 623 ----MCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKASE---NQHQ 675
+ +L + KR +LA + ++ + I++ FE+I DD+A + HQ
Sbjct: 443 VPVSVATFLLNEKRKQLATIEANQEVSIVIVPVPQMETPHFEIIRMRDDEAGSEHVSSHQ 502
Query: 676 VA 677
VA
Sbjct: 503 VA 504
>gi|226943599|ref|YP_002798672.1| Ribonuclease E [Azotobacter vinelandii DJ]
gi|226718526|gb|ACO77697.1| Ribonuclease E [Azotobacter vinelandii DJ]
Length = 1139
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 205/363 (56%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ L+ W I E + ++ + P L+++
Sbjct: 158 VPADMGLIVRTAGLGRSSEELQWDLDYLVQLWTAIKEAS----------LDRSPPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S+++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALSFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V +++++A+E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEDKMREALEADRARVQIGRISRFGLLEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|117927963|ref|YP_872514.1| ribonuclease G [Acidothermus cellulolyticus 11B]
gi|117648426|gb|ABK52528.1| RNAse G [Acidothermus cellulolyticus 11B]
Length = 702
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 194/319 (60%), Gaps = 14/319 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L RF + + +G+SRK+ ER RLK I
Sbjct: 332 LKPGQTVVVQVTKDPIGHKGARLTSQISLPGRFLVFVPEGSMMGISRKLPDTERNRLKAI 391
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + PEG G+ +RT A G S EEL +D+ L++ W++I + A+S G P
Sbjct: 392 LRKIMPEGAGVIVRTAAEGASEEELARDIARLMAQWEDIQKKAES----------GTAPA 441
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE ++VV + V +Y+ +APDL R+ + +F
Sbjct: 442 LLYAEPDLTIRVVRDIFNEDFAQLVVQGDSEWDMVEAYVAHVAPDLLPRISHWTSDEDVF 501
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L +RV LP+GG L+I++TEA+V IDVN G G G + E+ + NL
Sbjct: 502 AHYRIDEQLAKALDRRVWLPSGGYLIIDRTEAMVVIDVNTGR-FVGKGGNLEETVTKTNL 560
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 561 EAAEEIVRQLRLRDIGGIIVIDFIDMLLESNRELVLRRLVECLGRDRTKHQVAEVTSLGL 620
Query: 591 MEITRKR---AMMEQKADP 606
+++TRKR ++E ++P
Sbjct: 621 VQMTRKRVGSGLLEAFSEP 639
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLG 118
+G ++++ F++ + + QR I VLED LVE + +N +VYLG
Sbjct: 226 RGMILTEAEFLARRESVERVMVVRQRGDLTQIGVLEDGILVEHYVSTTSANRIVGNVYLG 285
Query: 119 VVTKLVPNMGGAFVNIGNSRPSLM 142
V ++P M AFV+IG R +++
Sbjct: 286 RVQNVLPGMEAAFVDIGKGRNAVL 309
>gi|407790940|ref|ZP_11138030.1| ribonuclease [Gallaecimonas xiamenensis 3-C-1]
gi|407202224|gb|EKE72218.1| ribonuclease [Gallaecimonas xiamenensis 3-C-1]
Length = 977
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 203/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K E+ + + +G P K V++G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARSYFSENAKGAG----RPNIKDV--VKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK +LQ
Sbjct: 100 VIVQIDKEERGNKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGEERTELKEALSSLQ 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEG GL +RT G S EEL+ DL+ L W+NI E A S P L+H+
Sbjct: 160 LPEGMGLIVRTAGVGKSAEELKWDLDVLQHHWQNIQEAAASRP----------APFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY V ++V+D R + EV S++Q + PD +V+ Y IPLF+ +
Sbjct: 210 ESNVIVRAIRDYLRRDVGEIVIDHNRVFEEVKSHIQTMRPDFITKVKPYKGEIPLFNYYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL AA
Sbjct: 270 IELQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V + AV DR+ V++ +SR GLME++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPARHQREVENRLADAVRADRARVQLGRISRFGLMEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQAEELRVALVDGQKLYDLDIEHPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|383645441|ref|ZP_09957847.1| hypothetical protein SchaN1_22475 [Streptomyces chartreusis NRRL
12338]
Length = 1382
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 189/307 (61%), Gaps = 10/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 706 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 765
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L W++I + AK+ G P
Sbjct: 766 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEDIQKKAKNG---------GNAPT 816
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R++ + + +F
Sbjct: 817 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWQTIHGYVSHVAPDLAERLQKWTSEVDVF 876
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 877 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 935
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 936 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 995
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 996 VQMTRKR 1002
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 630 QIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 683
>gi|149192305|ref|ZP_01870514.1| ribonuclease E [Vibrio shilonii AK1]
gi|148833858|gb|EDL50886.1| ribonuclease E [Vibrio shilonii AK1]
Length = 1014
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 142/394 (36%), Positives = 214/394 (54%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 81 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKDVLS--EGQE 126
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 127 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTELKAALSTLE 186
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W+NI AAD+ P L+H+
Sbjct: 187 LPQGMGLIVRTAGVGKSAEELEWDLRFLLNNWENIKG-------AADQN---PAPFLIHQ 236
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 237 ESNVIVRALRDYLRRDIGEILIDSNTIYERARQHIQLVRPDFVNRVKKYEGEVPLFSHYQ 296
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L+ NL AA
Sbjct: 297 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALNTNLEAAD 354
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 355 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRIDRARVQIGRISRFGLLEMS 414
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 415 RQRL---------SPS-----LAEASHHICPRCT 434
>gi|254514410|ref|ZP_05126471.1| ribonuclease E [gamma proteobacterium NOR5-3]
gi|219676653|gb|EED33018.1| ribonuclease E [gamma proteobacterium NOR5-3]
Length = 987
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++GT++IVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R L+
Sbjct: 95 VKEGTRLIVQVDKEERGNKGAALTTFISLPGRYMVLMPNNPRAGGISRRIEGDDRAELRE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G G+ IRT G S EELQ DL LL W+ + + G E
Sbjct: 155 ALSALDIPDGMGVIIRTAGVGRSAEELQWDLNYLLQLWEAVSKA----------GEENRS 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+LL++ + V+DY + V ++++DSP + + ++ + P R++LY+ IP
Sbjct: 205 PVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQAMDFVSMVMPKYQQRIKLYEDNIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF++F IE +I + + V LP+GGS+VI+ TEALVSID+N G + E+ L
Sbjct: 265 LFNRFQIESQIESAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGVNIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM N+R V ++ A+ DR+ V+V +SR
Sbjct: 323 NLEAADEVARQLRLRDMGGLIVIDFIDMLAARNQRAVETRMRDALAIDRARVQVGRISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
Score = 42.4 bits (98), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y+G +T++ P++ AFV+ G
Sbjct: 4 MLINATHPEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKH------YREP 150
R + +K YR+P
Sbjct: 64 RHGFLSVKEIAREYFYRDP 82
>gi|311745200|ref|ZP_07718985.1| ribonuclease G [Algoriphagus sp. PR1]
gi|126577723|gb|EAZ81943.1| ribonuclease G [Algoriphagus sp. PR1]
Length = 523
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 148/402 (36%), Positives = 225/402 (55%), Gaps = 26/402 (6%)
Query: 205 EHNDDEEHDGDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKS 262
E D++ GD + V +++ +N + ID G + F + L N
Sbjct: 30 EGMDNQFKVGDIYLGTVRKIVNGLNAAFIDVGYEKDAFLHY----QDLGPNFNSLMKFTK 85
Query: 263 EVPDDSHTSHPQGTKDSKHTP-----GEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYP 317
V +++++S+ K ++ P G+ + + + K +V+VQVVKE + TKGP L+
Sbjct: 86 MVRNNNYSSY--NLKGFENVPEIDKIGKISSI-LSKNNQVLVQVVKEPISTKGPRLSCEL 142
Query: 318 KLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQ 376
L R+ +L+ D + VS+KI + ER RL + +++P FG+ IRTVA G S+ EL
Sbjct: 143 SLPGRYLVLVPFSDSVNVSKKIRSSDERKRLLRLINSIKPANFGVIIRTVAEGQSVTELD 202
Query: 377 KDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVV 436
KDL LL+ W+ M+ A + + V G M S+V+D NE + V
Sbjct: 203 KDLRNLLNNWEEGMQKLLKAK--SRDKVIGE--------MSMASSLVRDLLNESFDAITV 252
Query: 437 DSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLV 496
+ TY ++ SY++ IAP+ V LY+ + LF+ F IE++I ++ + V LP GG ++
Sbjct: 253 EEESTYDQIRSYIRSIAPEKEKIVRLYNGKAKLFENFGIEKQIKSLFGQTVSLPQGGYVI 312
Query: 497 IEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDM 556
IE TEAL IDVN G+ S +E L NL AAK+IAR+LRLRD+GGIIVVDFIDM
Sbjct: 313 IEHTEALHVIDVNSGNKS-NQESDQESTALKTNLVAAKEIARQLRLRDMGGIIVVDFIDM 371
Query: 557 ADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRA 598
NK+++YE +K+ ++ DRS V LS+ GLM+ITR+R
Sbjct: 372 RKAENKKVIYEAMKEELKMDRSKHTVLPLSKFGLMQITRQRV 413
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST +LI+S+ + RIA+L+D+ LVEL E + + + +YLG V K+V + AF++
Sbjct: 1 MSTELLIDSA-QSGSRIALLQDKSLVELHSEGMDNQFKVGDIYLGTVRKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTK 161
+G + + + HY++ + P F K
Sbjct: 60 VGYEKDAFL---HYQD--LGPNFNSLMK 82
>gi|352101010|ref|ZP_08958521.1| ribonuclease, Rne/Rng family protein [Halomonas sp. HAL1]
gi|350600931|gb|EHA16988.1| ribonuclease, Rne/Rng family protein [Halomonas sp. HAL1]
Length = 1078
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 202/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K S KD P K L+ +G +
Sbjct: 54 EAAFVDYG-ADRH------GFLPLK-------EISKEYFVKDVSGRPSIKEVLK--EGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G ER++LK + +
Sbjct: 98 VIVQVDKEERGNKGAALTTFVSLAGRFLVLMPNNPRAGGISRRIEGDERSQLKDAMGQLT 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ GL +RT G + EELQ DL+ L+ W++I E + P L++R
Sbjct: 158 VPDKMGLIVRTAGIGRNPEELQWDLDYLVQVWESIT----------TEAAKRPAPFLIYR 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DSP + E S+++ + P +++LY +PLF +F
Sbjct: 208 ESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALSFIRQVMPSYQQKIKLYADEVPLFSRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L N AA
Sbjct: 268 IESQIETAYQREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQTNSEAAD 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N+R V ++ A++ DR+ V++ +SR GLME++
Sbjct: 326 EIARQLRLRDIGGLVVIDFIDMGPARNQREVENRMRDALKLDRARVQIGRISRFGLMEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
>gi|83814929|ref|YP_444634.1| ribonuclease [Salinibacter ruber DSM 13855]
gi|83756323|gb|ABC44436.1| ribonuclease, Rne/Rng family subfamily [Salinibacter ruber DSM
13855]
Length = 596
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 195/326 (59%), Gaps = 16/326 (4%)
Query: 273 PQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDR 332
P+G KD P + + +G ++VQV KE + KG ++ L RF +L+ +
Sbjct: 97 PKGKKDWDKRPSD----LLNRGQTILVQVTKEPISNKGSRISTDISLAGRFLVLVPLQNY 152
Query: 333 IGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391
+ VSRKIT ER RL+ +A +L P+G G+ +RTVA + L KD++ L+ W+ + +
Sbjct: 153 VAVSRKITDDEERRRLESLASSLVPDGVGVIVRTVAQDRDAKSLDKDMKLLMERWRRVEK 212
Query: 392 HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQD 451
K + P L+H + SIV+D F+E+ +++VD Y + SY++
Sbjct: 213 RLKDKP---------SPPELVHEDVDMASSIVRDEFSEEYDRILVDHEGLYSSIQSYVRA 263
Query: 452 IAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGG 511
+ P L DRVEL++ P+F+ I+ + RV LP+GG L IE+TEA+ +DVN G
Sbjct: 264 VGPQLVDRVELHEGDQPVFESVGIQHGADRAFKDRVELPSGGYLFIEKTEAMHVVDVNSG 323
Query: 512 HGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKK 571
G G S+ + L+VNL AA+ IAR++RLRD+GGIIVVDFID+ D+ +K+ VY+EVKK
Sbjct: 324 RS--GKGKSQAENSLNVNLEAARVIARQIRLRDLGGIIVVDFIDLRDEDDKKKVYDEVKK 381
Query: 572 AVERDRSMVKVSELSRHGLMEITRKR 597
E DR++ KV +S GL+EITR+R
Sbjct: 382 GFEEDRAVTKVLPMSDFGLVEITRQR 407
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
RIA++ED KLVEL +E + ++YLG + K++P++ AFV+IG + + +
Sbjct: 15 RIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAAFVDIGQEQDAFL 68
>gi|406936444|gb|EKD70163.1| hypothetical protein ACD_46C00616G0004 [uncultured bacterium]
Length = 784
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 209/363 (57%), Gaps = 27/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E E +GF P K +S+ +DS P L+ + +
Sbjct: 55 EAAFVDYGE-------ERHGFLPLKEVARSCFRSSY----EDSGRRPTISEVLE--EDQE 101
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
+IVQV KE G KG LT + L + +L+ + R G VSR+I G ER L + +LQ
Sbjct: 102 LIVQVEKEERGNKGAALTTFITLPGCYLVLMPNNPRAGGVSRRIEGEERDELHSLLGSLQ 161
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL IRT G + EELQ DLE LL W + AK + P L+++
Sbjct: 162 APDGMGLIIRTAGGGRTQEELQWDLEILLRLWDVVQRAAK----------DKPAPFLIYQ 211
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++D P + +V ++L+ I PD +RV+LY PLF +F
Sbjct: 212 EGNAVIRALRDYLRKDIDEILIDHPDVHEDVVNHLKLIRPDFVNRVKLYKDPTPLFTRFQ 271
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS++I+ TEALVSID+N G G +E A++ NL AA
Sbjct: 272 IESQIESAFQREVRLPSGGSIIIDHTEALVSIDINSAKSTKG-GDIEETALM-TNLEAAN 329
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM+ N+R V E ++KA+ DR+ V++ +SR GL+E++
Sbjct: 330 EIARQLRLRDIGGLIVIDFIDMSPVRNQREVEERLRKALAMDRARVQIGRISRFGLLEMS 389
Query: 595 RKR 597
R+R
Sbjct: 390 RQR 392
>gi|294506385|ref|YP_003570443.1| ribonuclease E [Salinibacter ruber M8]
gi|294342713|emb|CBH23491.1| Ribonuclease E [Salinibacter ruber M8]
Length = 596
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 195/326 (59%), Gaps = 16/326 (4%)
Query: 273 PQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDR 332
P+G KD P + + +G ++VQV KE + KG ++ L RF +L+ +
Sbjct: 97 PKGKKDWDKRPSD----LLNRGQTILVQVTKEPISNKGSRISTDISLAGRFLVLVPLQNY 152
Query: 333 IGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391
+ VSRKIT ER RL+ +A +L P+G G+ +RTVA + L KD++ L+ W+ + +
Sbjct: 153 VAVSRKITDDEERRRLESLASSLVPDGVGVIVRTVAQDRDAKSLDKDMKLLMERWRRVEK 212
Query: 392 HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQD 451
K + P L+H + SIV+D F+E+ +++VD Y + SY++
Sbjct: 213 RLKDKP---------SPPELVHEDVDMASSIVRDEFSEEYDRILVDHEGLYSSIQSYVRA 263
Query: 452 IAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGG 511
+ P L DRVEL++ P+F+ I+ + RV LP+GG L IE+TEA+ +DVN G
Sbjct: 264 VGPQLVDRVELHEGDQPVFESVGIQHGADRAFKDRVELPSGGYLFIEKTEAMHVVDVNSG 323
Query: 512 HGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKK 571
G G S+ + L+VNL AA+ IAR++RLRD+GGIIVVDFID+ D+ +K+ VY+EVKK
Sbjct: 324 RS--GKGKSQAENSLNVNLEAARVIARQIRLRDLGGIIVVDFIDLRDEDDKKKVYDEVKK 381
Query: 572 AVERDRSMVKVSELSRHGLMEITRKR 597
E DR++ KV +S GL+EITR+R
Sbjct: 382 GFEEDRAVTKVLPMSDFGLVEITRQR 407
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
RIA++ED KLVEL +E + ++YLG + K++P++ AFV+IG + + +
Sbjct: 15 RIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAAFVDIGQEQDAFL 68
>gi|386811647|ref|ZP_10098872.1| ribonuclease [planctomycete KSU-1]
gi|386403917|dbj|GAB61753.1| ribonuclease [planctomycete KSU-1]
Length = 506
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%)
Query: 255 NGFFPSKSEVPDDSHTSHPQ--GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
NGF +P + + +H T H +K + G +V+VQV KEG+G KGP+
Sbjct: 66 NGFLHISDVLPPNGNGNHSSEGDTAQKSHRESQKIRDILHLGQEVLVQVTKEGMGAKGPS 125
Query: 313 LTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQP-EGFGLTIRTVAAGH 370
LT Y L RF +L+ R GVS+KI + ER RLK I L P + G IRT
Sbjct: 126 LTTYISLPGRFLVLMPGVPRHGVSKKILSEEERQRLKKILAGLNPPQNIGFIIRTAGEQQ 185
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ +E+ KD LL WKNI + +K+A+ P +++ + ++D F+
Sbjct: 186 TKKEIHKDFHYLLKLWKNIEKRSKNAS----------APATIYQESDLVIRAIRDIFSTD 235
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+++++VDS Y +L+ I P + LY + PLF K+NIE+EI ++ K++PLP
Sbjct: 236 IREILVDSEAVYERTRDFLRIIMPKYEKLLTLYREDKPLFHKYNIEKEIEDINCKKIPLP 295
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
GGS+VIEQTEALV+IDVN G F S E+ NL AAK++ R++RLRDIGG+IV
Sbjct: 296 RGGSIVIEQTEALVAIDVNSGR--FKDESDPEETAFKTNLKAAKEVTRQIRLRDIGGVIV 353
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+DFIDM ++ + + + + A++RD++ K+ ++S+ +E+TR+R
Sbjct: 354 IDFIDMQEEGHIHAIEKALADALKRDKARTKMLKMSKFCTIELTRQR 400
>gi|29832008|ref|NP_826642.1| hypothetical protein SAV_5465 [Streptomyces avermitilis MA-4680]
gi|29609126|dbj|BAC73177.1| hypothetical protein SAV_5465 [Streptomyces avermitilis MA-4680]
Length = 1387
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 189/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 705 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 764
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 765 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS----------GNAPT 814
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 815 LLYGEPDMTVRVVRDIFNEDFTKVIVSGDEAWETIHGYVAHVAPDLSDRLSKWTSEVDVF 874
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 875 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 933
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 934 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 993
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 994 VQMTRKR 1000
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + +S +VYLG V ++P+
Sbjct: 608 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPS 666
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 667 MEAAFIDIGKGRNAVL 682
>gi|295395000|ref|ZP_06805212.1| ribonuclease G and E [Brevibacterium mcbrellneri ATCC 49030]
gi|294972159|gb|EFG48022.1| ribonuclease G and E [Brevibacterium mcbrellneri ATCC 49030]
Length = 924
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 126/304 (41%), Positives = 185/304 (60%), Gaps = 9/304 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + + G+SRK+ ER RL+ +
Sbjct: 450 GDSVLVQVTKDPIGHKGARLTSQISLPGRFLVYVPNNAMTGISRKLPDKERQRLRKLLGD 509
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
PEG G+ +RT A G S EEL +D++ L W+ I + + S + A P LL+
Sbjct: 510 AVPEGNGVIVRTAAEGASEEELTRDIDRLAKRWQTIEKRSTSTKVLA--------PQLLY 561
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ I++D FNE K+V+D Y + Y++ +APDL DRVE Y +FD F
Sbjct: 562 SEPDMIVRIIRDVFNEDFTKLVIDGDGVYDTIHEYVELVAPDLVDRVERYTGDDDVFDHF 621
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
+ E+I LS++V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL AA
Sbjct: 622 RVSEQIEKALSRKVNLPSGGSLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTKNNLEAA 680
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
+++ R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 681 EEVIRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLGRDRTKHQVAEVTSLGLVQM 740
Query: 594 TRKR 597
TRKR
Sbjct: 741 TRKR 744
>gi|110833921|ref|YP_692780.1| phosphoric diester hydrolase [Alcanivorax borkumensis SK2]
gi|110647032|emb|CAL16508.1| phosphoric diester hydrolase [Alcanivorax borkumensis SK2]
Length = 1074
Score = 228 bits (582), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 137/364 (37%), Positives = 200/364 (54%), Gaps = 29/364 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQV-QKGT 295
EA F DF E +GF P K S KD K G +V ++G
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-------EISRQYFQKDPKDIQGRINIKEVIKEGQ 99
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK L
Sbjct: 100 EVIVQVAKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEALGAL 159
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+ G+ +RT G S EELQ DL LL W +I D + P L++
Sbjct: 160 NIPDEMGVIVRTAGLGRSAEELQWDLNYLLKLWTSI----------DDASQDRKAPFLIY 209
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++DS + Y E ++Q + D +++LYD PLF +F
Sbjct: 210 QESNVIIRAIRDYLRKDIGEVLIDSKKVYDEAQGFVQQVMQDFQHKIKLYDDETPLFSRF 269
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L NL AA
Sbjct: 270 QIESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALQTNLEAA 327
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IVVDFIDM N+R V ++ A+E DR+ +++ +SR GL+E+
Sbjct: 328 EEIARQLRLRDIGGLIVVDFIDMGPARNQRDVENRMRDALEADRARIQLGRISRFGLLEL 387
Query: 594 TRKR 597
+R+R
Sbjct: 388 SRQR 391
>gi|333027124|ref|ZP_08455188.1| hypothetical protein STTU_4628 [Streptomyces sp. Tu6071]
gi|332746976|gb|EGJ77417.1| hypothetical protein STTU_4628 [Streptomyces sp. Tu6071]
Length = 1349
Score = 228 bits (582), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 188/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 620 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 679
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK+ G P
Sbjct: 680 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKT----------GNAPT 729
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV R + + Y+ +APDL R+ + + F
Sbjct: 730 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEVDAF 789
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 790 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 848
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 849 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 908
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 909 VQMTRKR 915
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ Q I VLED+ LVE + +S +VYLG V ++P+
Sbjct: 524 FLARREAVERVMVVREQGERTQ-IGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPS 582
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 583 MEAAFIDIGKGRNAVL 598
>gi|348029142|ref|YP_004871828.1| ribonuclease [Glaciecola nitratireducens FR1064]
gi|347946485|gb|AEP29835.1| ribonuclease [Glaciecola nitratireducens FR1064]
Length = 981
Score = 228 bits (582), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 140/377 (37%), Positives = 211/377 (55%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ D H GF P K + + T P G K +
Sbjct: 40 NIYKGTITRVEPSLEAAFVDY-GADRH------GFLPLK----EIAKTYFPSGYK-LEGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K V++GT+VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDV--VREGTQVIVQVDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L+ P+G GL +RT G S EELQ DL L++ W NIM+ +++
Sbjct: 146 DERTDLKQSLGQLELPDGMGLIVRTAGVGKSYEELQWDLGVLVNHWSNIMKASETKP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D P + + ++++ + PD RV
Sbjct: 203 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKPAIFEKALAHIELVRPDFVSRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N G
Sbjct: 256 KLYQGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM N+R V +K AV+ DR+ +
Sbjct: 314 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVKNQREVENRMKDAVKPDRARI 373
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 374 QLGRISRFGLLEMSRQR 390
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQSEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAD 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEIAKTY-FP 79
>gi|359397137|ref|ZP_09190187.1| Ribonuclease E [Halomonas boliviensis LC1]
gi|357968931|gb|EHJ91380.1| Ribonuclease E [Halomonas boliviensis LC1]
Length = 1120
Score = 228 bits (581), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K S KD P K L+ +G +
Sbjct: 51 EAAFVDYG-ADRH------GFLPLK-------EISREYFVKDVSGRPSIKEVLK--EGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G ER++LK + +
Sbjct: 95 VIVQVDKEERGNKGAALTTFVSLAGRFLVLMPNNPRAGGISRRIEGDERSQLKDAMGQLT 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ GL +RT G + EELQ DL+ L+ W++I E + P L++R
Sbjct: 155 VPDKMGLIVRTAGIGRNPEELQWDLDYLVQVWESIT----------TEAAKRPAPFLIYR 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DSP + E ++++ + P +++LY +PLF +F
Sbjct: 205 ESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALAFIRQVMPSYQQKIKLYADEVPLFSRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L N AA
Sbjct: 265 IESQIETAYQREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQTNSEAAD 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N+R V ++ A++ DR+ V++ +SR GLME++
Sbjct: 323 EIARQLRLRDIGGLVVIDFIDMGPARNQREVENRMRDALKLDRARVQIGRISRFGLMEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|218709010|ref|YP_002416631.1| ribonuclease E [Vibrio splendidus LGP32]
gi|218322029|emb|CAV18067.1| ribonuclease E [Vibrio splendidus LGP32]
Length = 1041
Score = 228 bits (581), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 213/394 (54%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLR--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|429195719|ref|ZP_19187728.1| ribonuclease, Rne/Rng family [Streptomyces ipomoeae 91-03]
gi|428668579|gb|EKX67593.1| ribonuclease, Rne/Rng family [Streptomyces ipomoeae 91-03]
Length = 1425
Score = 228 bits (581), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 190/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 747 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 806
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 807 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS----------GNAPT 856
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R++ + + +F
Sbjct: 857 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLAERLQKWTSEVDVF 916
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 917 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 975
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 976 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1035
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1036 VQMTRKR 1042
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKL 123
+ +++ V V+++ S Q I VLED LVE + +S +VYLG V +
Sbjct: 647 EAEFLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNV 705
Query: 124 VPNMGGAFVNIGNSRPSLM 142
+P+M AF++IG R +++
Sbjct: 706 LPSMEAAFIDIGKGRNAVL 724
>gi|431796628|ref|YP_007223532.1| Rne/Rng family ribonuclease [Echinicola vietnamensis DSM 17526]
gi|430787393|gb|AGA77522.1| ribonuclease, Rne/Rng family [Echinicola vietnamensis DSM 17526]
Length = 523
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 148/402 (36%), Positives = 222/402 (55%), Gaps = 25/402 (6%)
Query: 206 HNDDEEHD---GDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPS 260
H+D+E + GD + V +++ +N ID G + F + L +
Sbjct: 28 HSDEENNQFKVGDMYLGTVRKIVNGLNAGFIDVGYEKDAFLHY----QDLGPKVKSLIKY 83
Query: 261 KSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQV-QKGTKVIVQVVKEGLGTKGPTLTAYP 317
++ ++ H+ HP +G K QV K +++VQVVKE + TKGP L+
Sbjct: 84 TKQIRNN-HSEHPTLKGFKLEPEIEKLGKISQVLSKNNQILVQVVKEPISTKGPRLSCEL 142
Query: 318 KLRSRFWILITSCDRIGVSRKITGVE-RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQ 376
L R+ +L+ + + VS+KI E R RL + +++PE FG+ IRTVA S+ EL
Sbjct: 143 SLAGRYLVLVPFSNAVNVSKKIRKAEERRRLARLITSIKPENFGVIIRTVAESQSVTELD 202
Query: 377 KDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVV 436
KDL L++TW++ M+ A + + V G M SIV+D NE + V
Sbjct: 203 KDLRNLVNTWEDGMKKLMKAK--SKDKVIGE--------MSMASSIVRDLLNESFDAITV 252
Query: 437 DSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLV 496
+ Y ++ SY++ IAP+ V+LY+ + LF+ F IE++I ++ + V LP+GG L+
Sbjct: 253 EDELIYDQIRSYIRSIAPEKEKIVKLYNGKAKLFESFGIEKQIKSLFGQSVSLPHGGYLI 312
Query: 497 IEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDM 556
IE TEAL IDVN G+ S +E L NL A K+IAR+LRLRD+GGIIV+DFIDM
Sbjct: 313 IEHTEALHVIDVNSGNKS-NQESDQETTALKTNLVAVKEIARQLRLRDMGGIIVIDFIDM 371
Query: 557 ADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRA 598
NKR VY+ +K A++ DRS V L++ GLM+ITR+R
Sbjct: 372 KKADNKRAVYDAMKTAMKEDRSKNTVLPLTKFGLMQITRQRV 413
>gi|315126330|ref|YP_004068333.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Pseudoalteromonas sp. SM9913]
gi|315014844|gb|ADT68182.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Pseudoalteromonas sp. SM9913]
Length = 999
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 203/365 (55%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ D H GF P K + + T PQG +T + ++ +++G
Sbjct: 54 EAAFVDYG-ADRH------GFLPLK----EIARTYFPQG-----YTFHGRPNIRDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 98 QEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSR 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIQQAADSAK----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D PR + E ++++ PD RV+LY PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|408531899|emb|CCK30073.1| hypothetical protein BN159_5694 [Streptomyces davawensis JCM 4913]
Length = 1336
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 189/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 694 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 753
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 754 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS----------GNAPT 803
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 804 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWSTIHGYVSHVAPDLAERLSKWTSEVDVF 863
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 864 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 922
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 923 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 982
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 983 VQMTRKR 989
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 618 QIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 671
>gi|148977657|ref|ZP_01814233.1| ribonuclease E [Vibrionales bacterium SWAT-3]
gi|145963172|gb|EDK28440.1| ribonuclease E [Vibrionales bacterium SWAT-3]
Length = 1053
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 213/394 (54%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLK--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|338997098|ref|ZP_08635803.1| ribonuclease E [Halomonas sp. TD01]
gi|338766171|gb|EGP21098.1| ribonuclease E [Halomonas sp. TD01]
Length = 1137
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K S KD P K L+ +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-------EISREYFIKDVSGRPSIKEVLK--EGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G +R++LK + +
Sbjct: 98 VIVQVDKEERGNKGAALTTFISLAGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLT 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ GL +RT G S EELQ DL+ L+ W++I E + + P L++R
Sbjct: 158 VPDKMGLIVRTAGIGRSPEELQWDLDYLVQVWESIT----------TEAGKRSAPFLIYR 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DSP + E +++ + P +++LY +PLF +F
Sbjct: 208 ESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALGFIRQVMPSYQQKIKLYADEVPLFSRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L N AA
Sbjct: 268 IESQIETAYQREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQTNSEAAD 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N+R V ++ A++ DR+ V++ +SR GLME++
Sbjct: 326 EIARQLRLRDIGGLVVIDFIDMGPARNQREVENRMRDALKLDRARVQIGRISRFGLMEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKH-YREPFI 152
R + +K RE FI
Sbjct: 64 RHGFLPLKEISREYFI 79
>gi|302519047|ref|ZP_07271389.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|302427942|gb|EFK99757.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length = 1045
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 188/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 429 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 488
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK+ G P
Sbjct: 489 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKT----------GNAPT 538
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV R + + Y+ +APDL R+ + + F
Sbjct: 539 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEVDAF 598
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 599 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 657
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 658 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 717
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 718 VQMTRKR 724
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ Q I VLED+ LVE + +S +VYLG V ++P+
Sbjct: 333 FLARREAVERVMVVREQGERTQ-IGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPS 391
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 392 MEAAFIDIGKGRNAVL 407
>gi|359436648|ref|ZP_09226742.1| ribonuclease E [Pseudoalteromonas sp. BSi20311]
gi|358028693|dbj|GAA62991.1| ribonuclease E [Pseudoalteromonas sp. BSi20311]
Length = 885
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 203/365 (55%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ D H GF P K + + T PQG +T + ++ +++G
Sbjct: 54 EAAFVDYG-ADRH------GFLPLK----EIARTYFPQG-----YTFHGRPNIRDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 98 QEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSR 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIQQAADSAK----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D PR + E ++++ PD RV+LY PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|417948147|ref|ZP_12591295.1| ribonuclease E [Vibrio splendidus ATCC 33789]
gi|342810177|gb|EGU45270.1| ribonuclease E [Vibrio splendidus ATCC 33789]
Length = 1048
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 213/394 (54%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLK--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 385 RQRL---------SPS-----LAEASHHICPRCT 404
>gi|309810421|ref|ZP_07704252.1| ribonuclease, Rne/Rng family [Dermacoccus sp. Ellin185]
gi|308435618|gb|EFP59419.1| ribonuclease, Rne/Rng family [Dermacoccus sp. Ellin185]
Length = 784
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 190/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I
Sbjct: 283 LKAGESVLVQVTKDPIGHKGARLTSQISLPGRFVVFVPGNSMTGISRKLPDTERARLKRI 342
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G+ +RT A G S EEL+ D+E L+ W+ I A++A P
Sbjct: 343 LKEVVPADAGVIVRTAAEGASEEELRADVERLMKMWERIQAKAETAN----------APS 392
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LLH T+ +++D FNE KMVV R ++EV +Y+ ++APDL +R+E ++ +F
Sbjct: 393 LLHGEPDLTVRVIRDVFNEDFAKMVVSGERAWNEVHTYISEVAPDLVERLEKWEGDEDVF 452
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ + ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + N+
Sbjct: 453 AEHRIDEQLAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKNNI 511
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIVVDFIDM ++N+ LV + + + RDR+ +V+E++ GL
Sbjct: 512 EAAEEIVRQLRLRDIGGIIVVDFIDMVLEANRELVVRRLLECLGRDRTKHQVAEVTSLGL 571
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 572 VQMTRKR 578
>gi|254429811|ref|ZP_05043518.1| ribonuclease, Rne/Rng family protein [Alcanivorax sp. DG881]
gi|196195980|gb|EDX90939.1| ribonuclease, Rne/Rng family protein [Alcanivorax sp. DG881]
Length = 1086
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 202/364 (55%), Gaps = 29/364 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQV-QKGT 295
EA F DF E +GF P K S KD K G +V ++G
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-------EISRQYFQKDPKDIQGRINIKEVIKEGQ 96
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK L
Sbjct: 97 EVIVQVAKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEALGAL 156
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+ G+ +RT G S EELQ DL LL W +I E ++ + P L++
Sbjct: 157 TIPDEMGVIVRTAGLGRSAEELQWDLNYLLKLWTSIDEASQ----------DRKAPFLIY 206
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++DS + Y E ++Q + D +++LYD PLF +F
Sbjct: 207 QESNVIIRAIRDYLRKDIGEVLIDSKKVYDEAQGFVQQVMQDFQHKIKLYDDETPLFSRF 266
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L NL AA
Sbjct: 267 QIESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALQTNLEAA 324
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I+R+LRLRDIGG+IVVDFIDM N+R V ++ A+E DR+ +++ +SR GL+E+
Sbjct: 325 EEISRQLRLRDIGGLIVVDFIDMGPARNQRDVENRMRDALEADRARIQLGRISRFGLLEL 384
Query: 594 TRKR 597
+R+R
Sbjct: 385 SRQR 388
>gi|119025257|ref|YP_909102.1| ribonuclease G [Bifidobacterium adolescentis ATCC 15703]
gi|118764841|dbj|BAF39020.1| ribonuclease G [Bifidobacterium adolescentis ATCC 15703]
Length = 937
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 191/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER RLK
Sbjct: 540 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERARLK 599
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I AK DE + G
Sbjct: 600 NIVSKIAPKDMGVIIRTAAEGASEEAITKDLENLVRQWERIT--AKR-----DEFLHGKR 652
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-- 466
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 653 PKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYERIEEYLDTMAPDLKDKLEKWDPAEH 712
Query: 467 --IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 713 DGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 771
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL AA++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 772 VTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 831
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 832 VTSLGLVQMTRKR 844
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 466 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 519
>gi|381399378|ref|ZP_09924477.1| ribonuclease, Rne/Rng family [Microbacterium laevaniformans OR221]
gi|380773277|gb|EIC06882.1| ribonuclease, Rne/Rng family [Microbacterium laevaniformans OR221]
Length = 800
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 187/309 (60%), Gaps = 11/309 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L ++ G +V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK
Sbjct: 322 LALKSGDRVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGAMNGISRKLPDTERARLK 381
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K + PE G+ +RT A G + ++L +D++ L + W++I +
Sbjct: 382 RILKEVLPESSGVIVRTAAEGATEDQLTRDVQRLTAQWEHISSQVEKIG----------A 431
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LLH + IV+D FNE KM++ Y +T+YL +APDL +RVE Y+
Sbjct: 432 PALLHSEPDLLVKIVRDVFNEDFSKMLIQGEDAYQTITAYLAGVAPDLLERVEKYEDDQD 491
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
FD+F + E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 492 PFDRFRVTEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKN 550
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++
Sbjct: 551 NLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSL 610
Query: 589 GLMEITRKR 597
GL+++TRK+
Sbjct: 611 GLVQMTRKK 619
Score = 42.4 bits (98), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED LVE + + + +VYLG V ++P+M AFV+IG R +++
Sbjct: 248 QIAVLEDNVLVEHYVARSQESSLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVL 301
>gi|392555217|ref|ZP_10302354.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Pseudoalteromonas undina NCIMB 2128]
Length = 1077
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 203/365 (55%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ D H GF P K + + T PQG +T + ++ +++G
Sbjct: 54 EAAFVDYG-ADRH------GFLPLK----EIARTYFPQG-----YTFHGRPNIRDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 98 QEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSR 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIQQAADSAK----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D PR + E ++++ PD RV+LY PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|86147923|ref|ZP_01066227.1| ribonuclease E [Vibrio sp. MED222]
gi|85834248|gb|EAQ52402.1| ribonuclease E [Vibrio sp. MED222]
Length = 1041
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 213/394 (54%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLR--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|295838917|ref|ZP_06825850.1| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces sp. SPB74]
gi|295827249|gb|EDY42405.2| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces sp. SPB74]
Length = 713
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 189/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 245 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 304
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK+ G P
Sbjct: 305 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIRKKAKT----------GNAPT 354
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV R + V Y+ +APDL R+ + + +F
Sbjct: 355 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETVHGYVSHVAPDLVGRLSRWTSEVDVF 414
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 415 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 473
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 474 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 533
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 534 VQMTRKR 540
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED+ LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 170 QIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 223
>gi|418469069|ref|ZP_13039758.1| hypothetical protein SMCF_2688, partial [Streptomyces coelicoflavus
ZG0656]
gi|371550328|gb|EHN77786.1| hypothetical protein SMCF_2688, partial [Streptomyces coelicoflavus
ZG0656]
Length = 690
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 190/307 (61%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 287 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 346
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK + A P
Sbjct: 347 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKGGSAGA--------PT 398
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 399 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAPDLAERLSKWTSEVDVF 458
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 459 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 517
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 518 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 577
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 578 VQMTRKR 584
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 211 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 264
>gi|52425677|ref|YP_088814.1| CafA protein [Mannheimia succiniciproducens MBEL55E]
gi|52307729|gb|AAU38229.1| CafA protein [Mannheimia succiniciproducens MBEL55E]
Length = 960
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/381 (35%), Positives = 210/381 (55%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------IKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
R++LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 ISRIKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|407070992|ref|ZP_11101830.1| ribonuclease E [Vibrio cyclitrophicus ZF14]
Length = 1057
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 213/394 (54%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLR--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|387771087|ref|ZP_10127259.1| ribonuclease E [Pasteurella bettyae CCUG 2042]
gi|386903006|gb|EIJ67827.1| ribonuclease E [Pasteurella bettyae CCUG 2042]
Length = 965
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
VQ+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 VQEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + A
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQAADGRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL++ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALIAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|260773155|ref|ZP_05882071.1| ribonuclease E [Vibrio metschnikovii CIP 69.14]
gi|260612294|gb|EEX37497.1| ribonuclease E [Vibrio metschnikovii CIP 69.14]
Length = 1044
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 203/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + S P+G + P K L+ +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EISRDYFPEGYT-YQGRPSIKEVLR--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL- 354
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTDLKTALSTLV 156
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + ++S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQASES----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ I PD RV+ YD +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLIRPDFASRVKKYDGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|422607844|ref|ZP_16679838.1| ribonuclease E, partial [Pseudomonas syringae pv. mori str. 301020]
gi|330891480|gb|EGH24141.1| ribonuclease E [Pseudomonas syringae pv. mori str. 301020]
Length = 1033
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 187/307 (60%), Gaps = 14/307 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VI 350
+G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ +
Sbjct: 20 EGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREAL 79
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ P GL +RT G S EE+Q DL+ LL W I E + ++ + P
Sbjct: 80 NGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPF 129
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+++ + ++DY + + ++++DS E ++++ + P +++LY+ +PLF
Sbjct: 130 LIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLF 189
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++F IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL
Sbjct: 190 NRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNL 247
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL
Sbjct: 248 EAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGL 307
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 308 LEMSRQR 314
>gi|226939997|ref|YP_002795070.1| ribonuclease E [Laribacter hongkongensis HLHK9]
gi|226714923|gb|ACO74061.1| Probable ribonuclease E [Laribacter hongkongensis HLHK9]
Length = 1068
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 214/391 (54%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ V K N+ +I EP EA F D+ H GF P K EV
Sbjct: 26 DLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRH-------GFLPFK-EVSRTY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+H G + + +G ++IVQV K+ G KG LT Y L R+ +L+
Sbjct: 78 FKNHEGGRPRIQDV--------LSEGQELIVQVEKDERGNKGAALTTYVSLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR+I G ER L+ + LQ P+G L RT G SLEELQ DL L+ W
Sbjct: 130 NNPRGGGVSRRIEGEERNELRELMSQLQTPQGMSLIARTAGIGRSLEELQWDLNYLMQLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ E A SA A P L+ + + ++DYF ++ +++VD+ + +
Sbjct: 190 TAV-ESAASAQTA---------PFLIFQEGSLVIRAIRDYFQPEIGEILVDTEEIWDQAR 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P +R++LY +PLF +F IE +I S++V LP+GG++VI+ TEALVSI
Sbjct: 240 QFMSHVMPGNVNRIKLYKDDVPLFSRFQIEHQIETAFSRQVALPSGGAIVIDHTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G+ E + NL AA +IAR+LRLRD+GG++V+DFIDM + N+R V
Sbjct: 300 DVNSARAT--KGADIETTACNTNLEAADEIARQLRLRDLGGLVVIDFIDMENPKNQREVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+ +K A++ DR+ V++ +LSR GL+E++R+R
Sbjct: 358 QRLKDALKADRARVQMGKLSRFGLLELSRQR 388
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KLV+L +E V + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTD 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|318081174|ref|ZP_07988506.1| ribonuclease E [Streptomyces sp. SA3_actF]
Length = 826
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 188/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 210 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 269
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK+ G P
Sbjct: 270 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKT----------GNAPT 319
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV R + + Y+ +APDL R+ + + F
Sbjct: 320 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEVDAF 379
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 380 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 438
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 439 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 498
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 499 VQMTRKR 505
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED+ LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 135 QIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 188
>gi|318060733|ref|ZP_07979456.1| ribonuclease E [Streptomyces sp. SA3_actG]
Length = 881
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 188/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 151 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 210
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK+ G P
Sbjct: 211 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKT----------GNAPT 260
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV R + + Y+ +APDL R+ + + F
Sbjct: 261 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEVDAF 320
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 321 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 379
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 380 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 439
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 440 VQMTRKR 446
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED+ LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 76 QIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 129
>gi|386386413|ref|ZP_10071570.1| ribonuclease E [Streptomyces tsukubaensis NRRL18488]
gi|385666126|gb|EIF89712.1| ribonuclease E [Streptomyces tsukubaensis NRRL18488]
Length = 452
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 190/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 46 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 105
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AKS G P
Sbjct: 106 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIKKKAKS----------GNAPT 155
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE +++V + V Y+ +APDL DR++ + + +F
Sbjct: 156 LLYGEPDMTVRVVRDIFNEDFSRVIVSGDEAWQTVHGYVAHVAPDLVDRLQRWTSEVDVF 215
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ IDVN G G G + E+ + NL
Sbjct: 216 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGK-FTGQGGNLEETVTRNNL 274
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 275 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 334
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 335 VQMTRKR 341
>gi|21221057|ref|NP_626836.1| hypothetical protein SCO2599 [Streptomyces coelicolor A3(2)]
gi|6983741|emb|CAB75380.1| conserved hypothetical protein SCC88.10c [Streptomyces coelicolor
A3(2)]
Length = 1340
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 190/307 (61%), Gaps = 8/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 653 LKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKSI 712
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 713 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS-------GGSSNAPS 765
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 766 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAPDLAERLSKWTSEVDVF 825
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 826 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 884
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 885 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 944
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 945 VQMTRKR 951
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 577 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 630
>gi|372271854|ref|ZP_09507902.1| ribonuclease, Rne/Rng family protein [Marinobacterium stanieri S30]
Length = 1062
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 208/365 (56%), Gaps = 33/365 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F DF E +GF P K E+ + P+ G++ ++ V++G
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFCKQPER--------GQRPNIKEVVKEG 94
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
T+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +RT+LK ++
Sbjct: 95 TEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDDRTQLKEALSG 154
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G G +RT G S EELQ DL+ L++ W I + A P L+
Sbjct: 155 VNIPDGMGAIVRTAGIGRSSEELQWDLDYLITLWDAIKAVNERPA-----------PFLV 203
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
++ + ++DY + ++++D+P Y + ++Q + P +R++LY ++ PLF++
Sbjct: 204 YQESNVVIRAIRDYLRADIGEVLIDNPSVYDQAQMFVQQVMPSYENRIKLYKEQTPLFNR 263
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL A
Sbjct: 264 FQIESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSARAT--RGGDIEETALQTNLEA 321
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRDIGG+IV+DFIDM N+R V ++ A++ DR+ V++ +SR GL+E
Sbjct: 322 ADEIARQLRLRDIGGLIVIDFIDMTPIKNQREVENRLRDALKLDRARVQMGRISRFGLLE 381
Query: 593 ITRKR 597
++R+R
Sbjct: 382 MSRQR 386
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQPEELRVALVDGQRLFDLDIESDSREQKKANIYKGRITRVEPSLEAAFVDFGAE 60
Query: 138 RPSLMDIKHY-REPFIFPPFR 157
R + +K RE F P R
Sbjct: 61 RHGFLPLKEISREYFCKQPER 81
>gi|289771662|ref|ZP_06531040.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289701861|gb|EFD69290.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 1181
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 190/307 (61%), Gaps = 8/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 491 LKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKSI 550
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 551 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS-------GGSSNAPS 603
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 604 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAPDLAERLSKWTSEVDVF 663
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 664 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 722
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 723 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 782
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 783 VQMTRKR 789
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 415 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 468
>gi|455648326|gb|EMF27204.1| ribonuclease, Rne/Rng family, partial [Streptomyces gancidicus BKS
13-15]
Length = 1299
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 188/307 (61%), Gaps = 10/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 614 LKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 673
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W+ I + +K+ G P
Sbjct: 674 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIKKKSKNG---------GTAPT 724
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 725 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDEAWETIHGYVSHVAPDLAERLSRWTSEVDVF 784
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 785 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 843
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 844 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 903
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 904 VQMTRKR 910
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 538 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 591
>gi|257093129|ref|YP_003166770.1| Rne/Rng family ribonuclease [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257045653|gb|ACV34841.1| ribonuclease, Rne/Rng family [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 951
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 220/391 (56%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ ++I EP EA F D+ E +GF P K EV S
Sbjct: 26 DLDIESAAKEQKKSNIYKAVITRIEPSLEAAFVDY-------GAERHGFLPFK-EV---S 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
G + S+ T E +++G ++IVQV K+ G KG LT + L R+ +L+
Sbjct: 75 RAFFQPGVETSRATIKEA----LREGQELIVQVDKDERGNKGAALTTFVSLAGRYLVLMP 130
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ERT L+ + LQ P G L RT A G + EELQ DL LL W
Sbjct: 131 NNPRGGGVSRRVEGTERTELREVMDQLQVPPGMSLIARTAAIGRNGEELQWDLNYLLQLW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I + A+ +GA L+++ + ++DYF + ++++D+ Y +
Sbjct: 191 KAIEDAAQQQ--------KGA--FLIYQEGSLVIRAIRDYFQPDIGEILIDTDEVYDQAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P +R++ Y +PLF +F IE +I + S++V LP+GG++VI+ TEALVS+
Sbjct: 241 QFMSHVMPGTVNRIKRYRDDVPLFSRFQIEHQIESAYSRQVGLPSGGAIVIDHTEALVSV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G+ E+ L NL AA+++AR+LRLRD+GG+I++DFIDM + N+R V
Sbjct: 301 DVNSGRAT--RGADIEETALKTNLEAAEEVARQLRLRDLGGLIIIDFIDMENARNQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++ A+ DR+ V+ ++SR GL+E++R+R
Sbjct: 359 NRIRDALRFDRARVQTGKISRFGLLELSRQR 389
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQKKSNIYKAVITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K F P
Sbjct: 64 RHGFLPFKEVSRAFFQP 80
>gi|359786229|ref|ZP_09289365.1| ribonuclease E [Halomonas sp. GFAJ-1]
gi|359296343|gb|EHK60595.1| ribonuclease E [Halomonas sp. GFAJ-1]
Length = 1084
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K S KD P K L+ +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-------EISREYFIKDVSGRPSIKEVLK--EGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G +R++LK + +
Sbjct: 98 VIVQVDKEERGNKGAALTTFISLAGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLT 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ GL +RT G S EELQ DL+ L+ W++I E + + P L++R
Sbjct: 158 VPDKMGLIVRTAGIGRSSEELQWDLDYLVQVWESIT----------TEAGKRSAPFLIYR 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DSP + E +++ + P +++LY +PLF +F
Sbjct: 208 ESNVIIRAMRDYLRQDIGEVLIDSPEIHEEALGFIRQVMPSYQQKIKLYVDEVPLFSRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L N AA
Sbjct: 268 IESQIETAYQREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQTNSEAAD 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N+R V ++ A++ DR+ V++ +SR GLME++
Sbjct: 326 EIARQLRLRDIGGLVVIDFIDMGPARNQREVENRMRDALKLDRARVQIGRISRFGLMEMS 385
Query: 595 RKR 597
R+R
Sbjct: 386 RQR 388
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKH-YREPFI 152
R + +K RE FI
Sbjct: 64 RHGFLPLKEISREYFI 79
>gi|392545828|ref|ZP_10292965.1| RNase E [Pseudoalteromonas rubra ATCC 29570]
Length = 1089
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 204/365 (55%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ E +GF P K + + T P G +T + ++ +++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAKTYFPSG-----YTFNGRPNIKDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQV KE G KG LT + + + +L+ + R G +SR+I G ER LK +++
Sbjct: 98 QEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERIELKEALSR 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL+ LL W+ I A S G P L+
Sbjct: 158 LNLPKGMGLIVRTAGVGKSFEELEYDLKALLVHWEAIQNAADS----------GKAPFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D R + E ++++ PD +RV+LY +PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKARVFEEAKAHIERFRPDFINRVKLYQNDVPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAVRADRARVQIGKISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEIAKTY-FP 79
>gi|309802884|ref|ZP_07696985.1| ribonuclease, Rne/Rng family [Bifidobacterium dentium JCVIHMP022]
gi|308220351|gb|EFO76662.1| ribonuclease, Rne/Rng family [Bifidobacterium dentium JCVIHMP022]
Length = 917
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 524 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 583
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I + DE + G
Sbjct: 584 GIVSKIAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERI-------SAKRDEFLHGKR 636
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 637 PKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRIEEYLDTMAPDLKDKLEKWDPAEH 696
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 697 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 755
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 756 VTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 815
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 816 VTSLGLVQMTRKR 828
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 450 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 503
>gi|441179351|ref|ZP_20970089.1| ribonuclease, Rne/Rng family, partial [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440614438|gb|ELQ77711.1| ribonuclease, Rne/Rng family, partial [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 984
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 198/319 (62%), Gaps = 12/319 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 358 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 417
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AK+ + ++ P
Sbjct: 418 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKAGSTSS--------PS 469
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ + + +F
Sbjct: 470 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWQTIHGYVSHVAPDLVDRLQKWTSDVDVF 529
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 530 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 588
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 589 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEVTSLGL 648
Query: 591 MEITRKR---AMMEQKADP 606
+++TRKR ++E ++P
Sbjct: 649 VQMTRKRVGQGLLESFSEP 667
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 261 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 319
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 320 MEAAFVDIGKGRNAVL 335
>gi|410628422|ref|ZP_11339142.1| ribonuclease E [Glaciecola mesophila KMM 241]
gi|410152028|dbj|GAC25911.1| ribonuclease E [Glaciecola mesophila KMM 241]
Length = 1054
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 207/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 85 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A+S
Sbjct: 143 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAAESRP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD +RV
Sbjct: 200 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFANRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 253 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDRARV 370
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 371 QLGRISRFGLLEMSRQR 387
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|333918793|ref|YP_004492374.1| putative ribonuclease E/ G [Amycolicicoccus subflavus DQS3-9A1]
gi|333481014|gb|AEF39574.1| putative ribonuclease E/ G [Amycolicicoccus subflavus DQS3-9A1]
Length = 1070
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/307 (41%), Positives = 187/307 (60%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KG LT L RF + + G+SRK+ ER RLK I
Sbjct: 522 LKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPEGSSTGISRKLPDNERKRLKDI 581
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + P G+ IRT + G S EEL +D+E L + W +I E AKS +G P
Sbjct: 582 LREIVPADAGVIIRTASEGVSAEELGRDIERLRTLWSSIDEQAKSE--------KGNAPK 633
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+ + +V+D FNE ++VV R ++ V Y++ +APDL DRVE Y F
Sbjct: 634 SLYEEPDLLVKVVRDLFNEDFSRLVVQGDRVWNTVEGYVRKVAPDLLDRVEHYQADQDAF 693
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
F I+E+I L ++V LP+GG+LVI++TEA+ IDVN G G G + E+ + N+
Sbjct: 694 GAFRIDEQITKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTRNNI 752
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGG+IV+DFIDM +SN+ LV + +A+ RDR+ +VSE++ GL
Sbjct: 753 EAAEEIVRQLRLRDIGGMIVIDFIDMVLESNRDLVLRRLTEALSRDRTRHQVSEVTSLGL 812
Query: 591 MEITRKR 597
+++TRK+
Sbjct: 813 VQMTRKK 819
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 81 NSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPS 140
+S T +IAVLED LVE + S ++YLG V ++P+M AFV+IG R
Sbjct: 438 DSQPGTTTQIAVLEDSMLVEHFVTSASSGSIVGNIYLGRVQNVLPSMEAAFVDIGRGRNG 497
Query: 141 LM 142
++
Sbjct: 498 VL 499
>gi|283455282|ref|YP_003359846.1| ribonuclease G [Bifidobacterium dentium Bd1]
gi|283101916|gb|ADB09022.1| rne Ribonuclease G [Bifidobacterium dentium Bd1]
Length = 926
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 533 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 592
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I + DE + G
Sbjct: 593 GIVSKIAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERI-------SAKRDEFLHGKR 645
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 646 PKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRIEEYLDTMAPDLKDKLEKWDPAEH 705
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 706 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 764
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 765 VTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 824
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 825 VTSLGLVQMTRKR 837
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 459 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 512
>gi|429753088|ref|ZP_19285910.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 326
str. F0382]
gi|429174852|gb|EKY16319.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 326
str. F0382]
Length = 514
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 193/316 (61%), Gaps = 14/316 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQ 355
++VQ+VKE + TKGP +++ + R+ +L+ DRI +S+KI G E+ RL+ + + ++
Sbjct: 122 ILVQIVKEPISTKGPRISSELSIAGRYLVLVPFSDRISISQKIEGKAEKERLRKLLQGIK 181
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFG+ +RTVA G + EL KDL+GL + W L + + P +
Sbjct: 182 PKGFGVIVRTVAEGKKVAELDKDLQGLFNRW----------VLMCRKIQKAVYPSKVMSE 231
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
+ +T +I++D FN+ + VD+ Y ++ Y+Q+IAP+ + V+LY +P+F+KF+I
Sbjct: 232 VSKTGAILRDMFNDTFTGIHVDNEHLYEQIKKYVQEIAPEKENIVKLYRSSVPIFEKFHI 291
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V +P G LVIE TEAL IDVN G+ + +E L VNL AA +
Sbjct: 292 ERQIKTAFGRTVSMPKGAYLVIEHTEALHVIDVNSGNHS-NKNNDQETTALSVNLIAATE 350
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
IAR+LRLRD+GGIIVVDFIDM + N+R++++ ++ + DR+ K+ S+ GL++ITR
Sbjct: 351 IARQLRLRDMGGIIVVDFIDMGNSENRRILFDHLRNEMAEDRAKHKILPPSKFGLIQITR 410
Query: 596 KRAMMEQ--KADPENP 609
+R E K ENP
Sbjct: 411 QRVRQELNIKTKEENP 426
>gi|302551388|ref|ZP_07303730.1| ribonuclease E and G [Streptomyces viridochromogenes DSM 40736]
gi|302469006|gb|EFL32099.1| ribonuclease E and G [Streptomyces viridochromogenes DSM 40736]
Length = 782
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 189/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 223 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKSI 282
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L + W+ I + AKS G P
Sbjct: 283 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWEEIQKKAKS----------GNAPT 332
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 333 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWSTIHGYVSHVAPDLAERLSKWTSEVDVF 392
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 393 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 451
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 452 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 511
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 512 VQMTRKR 518
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ Q I VLED LVE + +S +VYLG V ++P+
Sbjct: 126 FLARREAVERVMVVRQHGDRTQ-IGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPS 184
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 185 MEAAFIDIGKGRNAVL 200
>gi|386840180|ref|YP_006245238.1| hypothetical protein SHJG_4093 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100481|gb|AEY89365.1| hypothetical protein SHJG_4093 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793474|gb|AGF63523.1| hypothetical protein SHJGH_3858 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 1471
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 188/307 (61%), Gaps = 10/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 781 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 840
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AK+ G P
Sbjct: 841 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKNG---------GNAPT 891
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL R+ + + +F
Sbjct: 892 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWQTIHGYVSHVAPDLAGRLSRWTSEVDVF 951
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 952 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 1010
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1011 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1070
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1071 VQMTRKR 1077
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 705 QIGVLEDGVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 758
>gi|392309498|ref|ZP_10272032.1| RNase E [Pseudoalteromonas citrea NCIMB 1889]
Length = 1054
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 204/365 (55%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ E +GF P K + + T P G +T + ++ +++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAKTYFPSG-----YTFNGRPNIKDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQV KE G KG LT + + + +L+ + R G +SR+I G ER LK +++
Sbjct: 98 QEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERIELKEALSR 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL+ LL W+ I E A S G P L+
Sbjct: 158 LDLPKGMGLIVRTAGVGKSFEELEYDLKALLVHWQAIQEAADS----------GKAPFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D R + E ++++ PD RV+LY +PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKARVFEEAKAHIERFRPDFMSRVKLYQNDVPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAVRPDRARVQIGKISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|32475458|ref|NP_868452.1| ribonuclease E [Rhodopirellula baltica SH 1]
gi|417305326|ref|ZP_12092298.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica WH47]
gi|421611547|ref|ZP_16052686.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica SH28]
gi|440716364|ref|ZP_20896875.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica SWK14]
gi|449138205|ref|ZP_21773496.1| ribonuclease, Rne/Rng family [Rhodopirellula europaea 6C]
gi|32446000|emb|CAD75816.1| ribonuclease E [Rhodopirellula baltica SH 1]
gi|327538420|gb|EGF25092.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica WH47]
gi|408497641|gb|EKK02161.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica SH28]
gi|436438710|gb|ELP32235.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica SWK14]
gi|448883141|gb|EMB13683.1| ribonuclease, Rne/Rng family [Rhodopirellula europaea 6C]
Length = 534
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 194/308 (62%), Gaps = 14/308 (4%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVI 350
++G +V+VQV+KEG+G KGPTL+ Y + R+ +L+ + R+GVSRKI + R RLK
Sbjct: 131 KRGDEVLVQVIKEGIGNKGPTLSTYISIPGRYLVLMPALSRVGVSRKIEDEDDRKRLKKC 190
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+L P +G G +RT AG S +ELQ+D++ LL WK I+ ++ +
Sbjct: 191 LLSLSPPKGLGFIVRTAGAGRSEDELQRDMDYLLRLWKAIVRRVENTTEPGE-------- 242
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
++ + ++D +++ + +++D +Y + +L+ + P + DR++ YD PL
Sbjct: 243 --IYEESDLIIRTIRDIYSDDIDHILIDQKESYEKARDFLKMVMPRVVDRLKYYDGPGPL 300
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F K+N+EEEI + ++V LP+GGS+VI+ TEALV+IDVN G+ F +S E+ +N
Sbjct: 301 FHKYNLEEEIVKINQRQVALPDGGSIVIDPTEALVAIDVNSGN--FRGNASAEENAFRLN 358
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
+AAAK+IAR+LRLRD+GG+IV DFIDM +S +R V ++ A+ DR+ K+ S G
Sbjct: 359 IAAAKEIARQLRLRDLGGVIVNDFIDMRKESYRRKVERVLRDAMANDRARTKILRTSPFG 418
Query: 590 LMEITRKR 597
L+E+TR+R
Sbjct: 419 LIEMTRQR 426
>gi|456390707|gb|EMF56102.1| hypothetical protein SBD_3416 [Streptomyces bottropensis ATCC
25435]
Length = 1262
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 190/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 604 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 663
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AK+ G P
Sbjct: 664 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKN----------GNAPT 713
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R++ + + +F
Sbjct: 714 LLYGEPDMTVRVVRDIFNEDFSKVIVSGEEAWETIHGYVSHVAPDLAERLQKWTSEVDVF 773
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 774 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 832
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 833 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 892
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 893 VQMTRKR 899
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKL 123
+ +++ V V+++ S Q I VLED LVE + +S +VYLG V +
Sbjct: 504 EAEFLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNV 562
Query: 124 VPNMGGAFVNIGNSRPSLM 142
+P+M AF++IG R +++
Sbjct: 563 LPSMEAAFIDIGKGRNAVL 581
>gi|408678098|ref|YP_006877925.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Streptomyces venezuelae ATCC 10712]
gi|328882427|emb|CCA55666.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Streptomyces venezuelae ATCC 10712]
Length = 1265
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 189/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 587 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 646
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 647 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS----------GNAPT 696
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 697 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVHHVAPDLTDRLSKWTSEVDVF 756
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 757 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 815
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 816 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 875
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 876 VQMTRKR 882
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 490 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 548
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 549 MEAAFVDIGKGRNAVL 564
>gi|410622783|ref|ZP_11333607.1| ribonuclease E [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410157656|dbj|GAC28981.1| ribonuclease E [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 1087
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 212/377 (56%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ D H GF P K + + T P G K +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-GADRH------GFLPLK----EIAKTYFPSGYK-LEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K V++GT+VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 85 PNIKDV--VREGTQVIVQVDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK + K P+ GL +RT G S EELQ DL L++ W NIM+ ++S
Sbjct: 143 DERTDLKHALGKLELPDSMGLIVRTAGVGKSYEELQWDLGVLVNHWSNIMKASESKP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+P + + ++++ + PD RV
Sbjct: 200 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDNPAVFEKALAHIELVRPDFVSRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N G
Sbjct: 253 KLYEGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARST--KGGD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV+ DR+ +
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVKHQREVENRMKDAVKPDRARI 370
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 371 QLGRISRFGLLEMSRQR 387
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQSEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAD 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 61 RHGFLPLKEIAKTY-FP 76
>gi|392538948|ref|ZP_10286085.1| RNase E [Pseudoalteromonas marina mano4]
Length = 1052
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 181/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VI+QV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIIQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA
Sbjct: 154 ALSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIRQAADSAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|315634771|ref|ZP_07890053.1| ribonuclease E [Aggregatibacter segnis ATCC 33393]
gi|315476323|gb|EFU67073.1| ribonuclease E [Aggregatibacter segnis ATCC 33393]
Length = 949
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 187/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASESRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|410031244|ref|ZP_11281074.1| ribonuclease, Rne/Rng family protein [Marinilabilia sp. AK2]
Length = 523
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 189/309 (61%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
+ K +V+VQVVKE + TKGP L+ + R+ +L+ D + VS+KI ER RL
Sbjct: 116 LSKNNQVLVQVVKEPISTKGPRLSCELSIAGRYLVLVPFSDTVNVSKKIRSADERKRLVR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P FG+ IRTVA G S+ EL KDL LL+TW++ M+ LA +G + +
Sbjct: 176 LITSIKPSNFGVIIRTVAEGQSVTELDKDLRNLLNTWEDGMKK-----LAKAKGRDKVIG 230
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
M SI++D NE + V+ Y ++ SY++ IAP+ V+LY+ + L
Sbjct: 231 -----EMSMASSIIRDLLNESFDAITVEDELIYDQIRSYIRSIAPEKEKIVKLYNGKAKL 285
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+ F IE++I ++ + + LP GG ++IE TEAL IDVN G+ S +E L N
Sbjct: 286 FENFGIEKQIKSLFGQTISLPQGGYVIIEHTEALHVIDVNSGNKS-NQESDQENTALKTN 344
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L A K+IAR+LRLRD+GGIIVVDFIDM NK+++Y+ +++A++ DRS V L++ G
Sbjct: 345 LVAVKEIARQLRLRDMGGIIVVDFIDMKKAENKKVIYDAMREAMKDDRSKHTVLPLTKFG 404
Query: 590 LMEITRKRA 598
LM+ITR+R
Sbjct: 405 LMQITRQRV 413
Score = 46.2 bits (108), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST +LI+S + RIA+L+D+ LVEL E ++ + +YLG V K+V + AF++
Sbjct: 1 MSTELLIDS-VQNGSRIALLKDKSLVELHSEGGENQFKVGDIYLGTVRKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYRE 149
+G + + + HY++
Sbjct: 60 VGYEKDAFL---HYQD 72
>gi|359447828|ref|ZP_09237394.1| ribonuclease E [Pseudoalteromonas sp. BSi20480]
gi|358046331|dbj|GAA73643.1| ribonuclease E [Pseudoalteromonas sp. BSi20480]
Length = 1040
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 181/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VI+QV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIIQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA
Sbjct: 154 ALSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIRQAADSAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|302545435|ref|ZP_07297777.1| putative ribonuclease, Rne/Rng family domain protein [Streptomyces
hygroscopicus ATCC 53653]
gi|302463053|gb|EFL26146.1| putative ribonuclease, Rne/Rng family domain protein [Streptomyces
himastatinicus ATCC 53653]
Length = 953
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 189/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 351 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 410
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL +D++ L + W+ I + AKS G P
Sbjct: 411 LKKIVPEDAGVIVRTAAEGASEDELARDVQRLQAQWEEIKKKAKS----------GNAPT 460
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ ++ + +F
Sbjct: 461 LLYGEPDMTVRVVRDIFNEDFSKVIVSGEDAWQTIHGYVSHVAPDLVDRLQKWNSDVDVF 520
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 521 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 579
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 580 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 639
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 640 VQMTRKR 646
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 275 QIGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 328
>gi|114562666|ref|YP_750179.1| ribonuclease, Rne/Rng family protein [Shewanella frigidimarina
NCIMB 400]
gi|114333959|gb|ABI71341.1| RNAse E [Shewanella frigidimarina NCIMB 400]
Length = 1124
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
+Q+G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 LQEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+A+ P G GL +RT G EL+ DL+ L W I E A+S A
Sbjct: 154 AMAELEVPNGMGLIVRTAGVGKESTELKWDLKVLQHHWDAIQEAAQS----------KAA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LYD +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKLHIGLVRPDFVERVKLYDSEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|258648379|ref|ZP_05735848.1| ribonuclease G [Prevotella tannerae ATCC 51259]
gi|260851549|gb|EEX71418.1| ribonuclease G [Prevotella tannerae ATCC 51259]
Length = 529
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/421 (34%), Positives = 232/421 (55%), Gaps = 24/421 (5%)
Query: 201 LVQFEHNDDEEHD--GDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLE-GDHHLDGESN 255
LV+F+ EE G+ + V +++ +N ++ G F +L+ G H+
Sbjct: 24 LVEFQQEGKEESFSVGNIYLAKVKKIMPGLNACFVNVGHERDAFLHYLDLGIHYRS---- 79
Query: 256 GFFPSKSEVPDDSHTSHPQGTKDSKHTPGEK---TWLQVQKGTKVIVQVVKEGLGTKGPT 312
F ++ D + TK S + EK +++G +V+VQ+ KE + TKGP
Sbjct: 80 --FEKYLQLIQDGKKGNLPLTKASGQSDLEKDGSIQNTLKQGQEVLVQIAKEPISTKGPR 137
Query: 313 LTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHS 371
LT RF +LI CD+I VS KI + ER RLK + +++P+GFG IRTVA G
Sbjct: 138 LTCEISFAGRFIVLIPFCDKISVSTKIKSAQERARLKQLISSIKPKGFGCIIRTVAEGKR 197
Query: 372 LEELQKDLEGLLSTWKN-IMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ EL +L+ LL W + I + K+ AL + P+L + +T+++++D FN
Sbjct: 198 VAELDLELKTLLKRWTDAIAKIQKNKALT-----QPKFPLLCYEETSRTVALLRDLFNPS 252
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ + VD Y +V Y++ IAPD V+LY ++P+FD F++ ++I + +
Sbjct: 253 YENIYVDDESVYKDVQDYVRLIAPDRQQIVKLYKGKVPIFDNFSVTKQIKTSFGRTITYK 312
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+G L+IE TEAL +DVN G+ +E LDVNL AA ++AR+LRLRD+GGIIV
Sbjct: 313 HGAYLIIEHTEALHVVDVNSGNRS-KSPEGQEVNALDVNLGAADELARQLRLRDMGGIIV 371
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRA--MMEQKADPEN 608
VDFIDM N++ +YE + + +++DR+ + LS+ GLM+ITR+R M+ K +
Sbjct: 372 VDFIDMNLAENRQKLYERMVENMKKDRARHNILPLSKFGLMQITRQRVRPAMDVKVEESC 431
Query: 609 P 609
P
Sbjct: 432 P 432
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE E + + ++YL V K++P + FVN+G+ R + + HY
Sbjct: 16 IALLEDKRLVEFQQEGKEESFSVGNIYLAKVKKIMPGLNACFVNVGHERDAFL---HY 70
>gi|56460457|ref|YP_155738.1| RNase E [Idiomarina loihiensis L2TR]
gi|56179467|gb|AAV82189.1| RNase E [Idiomarina loihiensis L2TR]
Length = 980
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 207/363 (57%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T PQG + P K V++G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAKTYFPQGYT-FQGRPNIKDV--VKEGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ER+ LK L
Sbjct: 97 VIVQIDKEERGQKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERSALKEALSDLN 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ GL +RT G S EEL+ DL LL+ W+ I + AADE P L+H+
Sbjct: 157 VPKEMGLIVRTAGVGKSKEELEWDLNVLLNHWEAI-------SKAADER---PAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
++DY + ++++DSP+ Y +V S++Q I PD RV+ Y+ +PLF +
Sbjct: 207 ESNVIFRALRDYLRRDIGEVLIDSPKVYEQVRSHIQLIRPDFLQRVKQYEGDVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL AA+
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEAAE 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ ++ +DR+ ++V+ +SR GLME++
Sbjct: 325 EIARQLRLRDVGGLVVIDFIDMTPARHQRDVENRLRDSLSQDRARIQVARISRFGLMEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 61 RHGFLPLKEIAKTY-FP 76
>gi|385653137|ref|ZP_10047690.1| ribonuclease G and E [Leucobacter chromiiresistens JG 31]
Length = 840
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 192/319 (60%), Gaps = 14/319 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I
Sbjct: 307 LKPGDQVLVQVTKDPVGHKGARLTSQISLPGRFLVYVPGGAMNGISRKLPDTERARLKKI 366
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G G+ +RT A G S ++L D++ L W++I + + +G P+
Sbjct: 367 LKEVLPTGAGVIVRTAAEGASEDQLTHDVQRLTRQWESIQKRVE----------KGGGPV 416
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LLH + IV+D FNE ++ + TY + YL +APDL +RVE Y +F
Sbjct: 417 LLHSEPDMLIKIVRDVFNEDFHRLTISGADTYGTIEHYLSQVAPDLLERVEQYQGERDIF 476
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
D++ + E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 477 DEYRVTEQIAKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKNNL 535
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 536 EAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRMVECLSRDRTKHQVAEVTSLGL 595
Query: 591 MEITRKR---AMMEQKADP 606
+++TRK+ ++E ++P
Sbjct: 596 VQMTRKKLGLGLLESFSEP 614
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V +++ ++ +Q I VLED+ LVE + N +VYLG V ++P+
Sbjct: 210 FLARRESVDREMIVRTTADRVQ-IGVLEDKVLVEHYVARSSENSLIGNVYLGRVQNVLPS 268
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 269 MEAAFVDIGRGRNAVL 284
>gi|296120629|ref|YP_003628407.1| ribonuclease, Rne/Rng family [Planctomyces limnophilus DSM 3776]
gi|296012969|gb|ADG66208.1| ribonuclease, Rne/Rng family [Planctomyces limnophilus DSM 3776]
Length = 537
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 186/308 (60%), Gaps = 14/308 (4%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVI 350
++G++V++QV+KEG+G KGPTL+ Y + R+ +L+ R+GVSRKI R RL+
Sbjct: 126 RRGSEVLIQVIKEGIGNKGPTLSTYISIPGRYLVLMPGLQRVGVSRKIGDDSIRRRLRQQ 185
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
K L P EG G IRT S ++LQ+D+ LL W I++ + P
Sbjct: 186 LKELSPPEGLGFIIRTAGIDRSQKDLQRDMNYLLRLWNVIVKRIRKFP----------AP 235
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
+ ++ + ++D +N +++ + +D PR Y +++ + P DRV+LYD + PL
Sbjct: 236 VDIYEESDMMIRTIRDIYNSEIENIWIDEPRAYERAKEFMKIVLPRAVDRVQLYDGKEPL 295
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F K +EEEI + + VPL GGS+VI+QTEALV+IDVN G F + E+ +N
Sbjct: 296 FHKHGVEEEIARIQRRHVPLKGGGSIVIDQTEALVAIDVNSGS--FRQDENAEENAYQMN 353
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++IAR++RLRD+GG+IV DFIDM ++ ++R V + AV RDR+ K+ S G
Sbjct: 354 LRAAEEIARQIRLRDLGGVIVNDFIDMREERHRRGVERALADAVARDRARTKILRTSPFG 413
Query: 590 LMEITRKR 597
L+E+TR+R
Sbjct: 414 LVEMTRQR 421
>gi|149376751|ref|ZP_01894509.1| Ribonucleases G and E [Marinobacter algicola DG893]
gi|149358990|gb|EDM47456.1| Ribonucleases G and E [Marinobacter algicola DG893]
Length = 1047
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 191/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK
Sbjct: 95 VAEGQEVIIQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNDVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQFWEAISQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ Y +V ++++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDAGTVYEDVLNFVRAVMPSFENKIKLYKDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N GH E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRATKGH--DIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IV+DFIDM ++R V +++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALEIDRARVQVGKISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
>gi|313676684|ref|YP_004054680.1| ribonuclease, rne/rng family [Marivirga tractuosa DSM 4126]
gi|312943382|gb|ADR22572.1| ribonuclease, Rne/Rng family [Marivirga tractuosa DSM 4126]
Length = 517
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/412 (35%), Positives = 230/412 (55%), Gaps = 34/412 (8%)
Query: 200 DLVQFEHNDDEEHD--GDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESN 255
+L++ +++ EE GD + +V +V++ +N + +D G + F + H L + N
Sbjct: 23 NLIEIHYDNKEEQFSVGDIYLGNVRKVMQGLNAAFVDVGYEKDAFLHY----HDLGPKVN 78
Query: 256 GFFPSKSEVPDDSHTSH--------PQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLG 307
++TS+ P+ K K + + K +V+VQV+KE +
Sbjct: 79 SLLKYTKFATTRNNTSYKLSKFKLEPEIDKLGKISQ------VLSKNKQVLVQVIKEPIS 132
Query: 308 TKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTV 366
TKGP L+ L R+ +L+ + I +S+KI T ER RL + +++PE FG+ IRTV
Sbjct: 133 TKGPRLSCELSLAGRYLVLVPFANGISISKKISTSEERKRLTRLISSIKPENFGVIIRTV 192
Query: 367 AAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDY 426
A G + EL DL LL TW+N ++ K A + + G V G+ SI++D
Sbjct: 193 AEGKEVAELDTDLRNLLDTWENGVKKLKDAK--PKDKIIGEV--------GRASSILRDM 242
Query: 427 FNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKR 486
NE + VD T+ E+ +Y+Q I P ++LY R +F+ F IE ++ ++ +
Sbjct: 243 MNESFDSIHVDDEETFKEIQTYIQKIDPSKEKILKLYTGRNKIFEHFGIERQLKSLFGQS 302
Query: 487 VPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIG 546
V + GG L+IE TEAL +DVN G+ G S+E L+ NL AAK+IAR+LRLRD+G
Sbjct: 303 VNVKGGGYLIIEHTEALHVVDVNSGNKSSGE-ESQEDTALNTNLEAAKEIARQLRLRDMG 361
Query: 547 GIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRA 598
GIIVVDFIDM + NK+L+++++K+ +E DRS V LS+ GLM++TR+R
Sbjct: 362 GIIVVDFIDMKNPDNKKLLFKKMKEFMETDRSKHTVLPLSKFGLMQVTRQRV 413
>gi|398786052|ref|ZP_10548832.1| ribonuclease, Rne/Rng family, partial [Streptomyces auratus
AGR0001]
gi|396993904|gb|EJJ04960.1| ribonuclease, Rne/Rng family, partial [Streptomyces auratus
AGR0001]
Length = 923
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 191/307 (62%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 342 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKQI 401
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL +D++ L + W+ I + AKS++ A P
Sbjct: 402 LKKIVPEDAGVIVRTAAEGASEEELARDVQRLQAQWEEIQKKAKSSSSNA--------PT 453
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ + + +F
Sbjct: 454 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWGTIHGYVAHVAPDLTDRLQKWTSDVDVF 513
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 514 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 572
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 573 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 632
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 633 VQMTRKR 639
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 245 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVLPS 303
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 304 MEAAFVDIGKGRNAVL 319
>gi|399114591|emb|CCG17385.1| ribonuclease E [Taylorella equigenitalis 14/56]
Length = 953
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 213/377 (56%), Gaps = 33/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F D+ + H GF P K EV S H GT S+ +
Sbjct: 37 NIYKGVITRIEPSLEACFVDYGQERH-------GFLPFK-EV---SRNYHKSGTDHSRIS 85
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
++ G ++I+QV KE G KG LT Y L R+ +L+ + + G +SR+I
Sbjct: 86 EA------LEVGQELIIQVEKEERGNKGAALTTYISLAGRYLVLMPNNPKGGGISRRIDW 139
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L+ PEG L RT G + EEL DL L+ WK I
Sbjct: 140 EERQELREAMSHLELPEGMSLIARTAGIGRTTEELNWDLTYLMQLWKAI----------E 189
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
D + PIL+++ + ++DYF+ + ++++D+ Y +V +++QD+ PD ++
Sbjct: 190 DAANHYSAPILIYQESSLVIRALRDYFSHDITEILIDTDEIYDQVNAFMQDVMPDNVAKI 249
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F +E +I S+ V LP+GGS+VI+ TEALV++DVN G
Sbjct: 250 KRYRHAVPLFSRFQVEHQIETAYSRHVHLPSGGSIVIDHTEALVAVDVNSARST--RGGD 307
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + N+ AA+++AR+LRLRD+GG+IV+DFIDM D N++ V ++K+A++ DR+ V
Sbjct: 308 IEETAMRTNIEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQKAVESKLKEAIQFDRARV 367
Query: 581 KVSELSRHGLMEITRKR 597
++ ++S+ GLME++R+R
Sbjct: 368 QMGKISKFGLMELSRQR 384
>gi|440748074|ref|ZP_20927328.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Mariniradius saccharolyticus AK6]
gi|436483278|gb|ELP39332.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Mariniradius saccharolyticus AK6]
Length = 523
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 187/307 (60%), Gaps = 12/307 (3%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIA 351
KG +V+VQVVKE + TKGP L+ + R+ +L+ D + VS+KI + ER RL +
Sbjct: 118 KGNQVLVQVVKEPISTKGPRLSCELSIAGRYLVLVPFSDTVNVSKKIRSAEERKRLVRLI 177
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
+++P FG+ IRTVA G S+ EL KDL LL+TW+ M+ A +G ++
Sbjct: 178 TSIKPANFGVIIRTVAEGQSVTELDKDLRNLLTTWEEGMKKLLKA--------KGRDKVI 229
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+M SI++D NE + V+ Y ++ SY++ IAP+ V+LY+ + LF+
Sbjct: 230 GEMSMAS--SIIRDLLNESFDAITVEDELVYDQIRSYIRSIAPEKEKIVKLYNGKAKLFE 287
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F IE++I ++ + + LP GG L+IE TEAL IDVN G+ S +E L NL
Sbjct: 288 SFGIEKQIKSLFGQTISLPQGGYLIIEHTEALHVIDVNSGNKS-NQESDQETTALKTNLV 346
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AAK+IAR+LRLRD+GGIIV+DFIDM NK+ +Y+ ++ ++ DRS V LS+ GLM
Sbjct: 347 AAKEIARQLRLRDMGGIIVIDFIDMKKAENKKAIYDAMRDVMKDDRSKHTVLPLSKFGLM 406
Query: 592 EITRKRA 598
+ITR+R
Sbjct: 407 QITRQRV 413
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST ++I+SS RIA+L+D+ LVE+ E ++ + +YLG V K+V + AF++
Sbjct: 1 MSTELVIDSS-QNGSRIALLKDKNLVEIHSEGGENQFKVGDIYLGTVRKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYRE 149
+G + + + HY++
Sbjct: 60 VGYEKDAFL---HYQD 72
>gi|406037472|ref|ZP_11044836.1| ribonuclease E [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 1116
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 192/309 (62%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 ILSSLNLPRGMSVIVRTAGIGRSQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y + P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTQNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDMA D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMAKDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|323144881|ref|ZP_08079447.1| S1 RNA binding domain protein [Succinatimonas hippei YIT 12066]
gi|322415348|gb|EFY06116.1| hypothetical protein HMPREF9444_02145 [Succinatimonas hippei YIT
12066]
Length = 941
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 207/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F D+ E +GF P K + + +PQGT S H
Sbjct: 37 NIYKGIITRIEPSLEAAFVDY-------GMERHGFLPLK----EIAREYYPQGTNFSDHA 85
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+++G +VIVQ+ KE G KG LT Y L + +L+ + R G +SR+I G
Sbjct: 86 ---AMKAALREGQEVIVQIEKEERGQKGAALTTYISLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK + + P+G G+ +RT G S EEL DL L W+ I + A
Sbjct: 143 EERAELKEALEGIDIPQGMGVIVRTAGVGKSSEELSWDLSILTKLWEMIKKAA------- 195
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G A P L+H+ L ++DY + ++++D + ++ Y++ + P+ +V
Sbjct: 196 --GTRPA-PFLIHQESSIALRAIRDYLRPDIGEILIDDRNVFEQIRHYVELVRPEFTQKV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY IPLF KF IE +I + + V LP+GG++VI+ TEAL SIDVN G
Sbjct: 253 HLYASDIPLFSKFQIESQIESAYQREVRLPSGGAIVIDPTEALTSIDVNSAKAT--RGGD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L N+ AA++IAR+LRLRDIGG+IV+DFIDM N+R + +++AV +DR+ +
Sbjct: 311 IEETALQTNIEAAEEIARQLRLRDIGGLIVIDFIDMTPIKNQREIENRMREAVRQDRARI 370
Query: 581 KVSELSRHGLMEITRKR 597
+ S +SR GL+E++R+R
Sbjct: 371 QFSRISRFGLLELSRQR 387
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 42/68 (61%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + + ++Y G++T++ P++ AFV+ G
Sbjct: 1 MLINATQQEEVRVALVDGQKLYDLDIESPQHANKKANIYKGIITRIEPSLEAAFVDYGME 60
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 61 RHGFLPLK 68
>gi|375266160|ref|YP_005023603.1| ribonuclease E [Vibrio sp. EJY3]
gi|369841481|gb|AEX22625.1| ribonuclease E [Vibrio sp. EJY3]
Length = 1029
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 204/363 (56%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKDASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++Q + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKAHIQLVRPDFINRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|92111361|gb|ABE73477.1| putative ribonuclease E [Photobacterium angustum S14]
Length = 1078
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 204/365 (55%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K EV D ++ QG + K +++G
Sbjct: 51 EAAFVDY-------GAERHGFLPLK-EVAKDYFPANYSYQGRPNIKEV--------LKEG 94
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK T
Sbjct: 95 QEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALST 154
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L P+G GL +RT G S EEL+ DL LL+ W + E A S + P L+
Sbjct: 155 LDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWNAVKEAADSQS----------APFLI 204
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++DSP+ + +++ + PD RV+ Y+ +PLF
Sbjct: 205 HQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPDFLSRVKRYEGEVPLFSH 264
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I++ + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 265 YQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARAT--KGGDIEETALQTNLEA 322
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 323 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 382
Query: 593 ITRKR 597
++R+R
Sbjct: 383 MSRQR 387
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 61 RHGFLPLKEVAKDY-FP 76
>gi|109898451|ref|YP_661706.1| ribonuclease [Pseudoalteromonas atlantica T6c]
gi|109700732|gb|ABG40652.1| RNAse E [Pseudoalteromonas atlantica T6c]
Length = 1070
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 206/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 55 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 102
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 103 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 160
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A S
Sbjct: 161 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRP--- 217
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD +RV
Sbjct: 218 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFANRV 270
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 271 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 328
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 329 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDRARV 388
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 389 QLGRISRFGLLEMSRQR 405
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 66 SLISKDNFVSTVI-----LINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
S I D + + I LIN++ R+A+++ +KL +L +E + ++Y G +
Sbjct: 2 SFIRGDRYTTESIRMKRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTI 61
Query: 121 TKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFP 154
T++ P++ AFV+ G R + +K + FP
Sbjct: 62 TRVEPSLEAAFVDYGAERHGFLPLKEIARTY-FP 94
>gi|336315776|ref|ZP_08570683.1| ribonuclease, Rne/Rng family [Rheinheimera sp. A13L]
gi|335879923|gb|EGM77815.1| ribonuclease, Rne/Rng family [Rheinheimera sp. A13L]
Length = 1076
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 205/378 (54%), Gaps = 32/378 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQG-TKDSKH 281
N+ I EP EA F D+ E +GF P K + S P G T D +
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPAGYTFDGR- 87
Query: 282 TPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT 340
P K V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I
Sbjct: 88 -PNIKEV--VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE 144
Query: 341 GVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALA 399
G ER LK LQ P+G GL +RT G S EEL DL+ LL W I A++
Sbjct: 145 GDERQDLKDSLDQLQLPDGMGLIVRTAGVGKSHEELDYDLKALLKHWSAITHEAQNRP-- 202
Query: 400 ADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
P L+H+ ++DY V ++++D+PR + E Y+Q PD R
Sbjct: 203 --------APFLIHQESNVVFRAIRDYLRRDVGEILIDNPRIFEEAKVYIQQFRPDFAHR 254
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
V++Y +PLF F IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 255 VKMYQGEVPLFMHFQIETQIESAFRREVRLPSGGSIVIDSTEALTAIDINSSKAT--KGG 312
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E+ + NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV++DR+
Sbjct: 313 DIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLKDAVKQDRAR 372
Query: 580 VKVSELSRHGLMEITRKR 597
V++ +SR GL+E++R+R
Sbjct: 373 VQIGRISRFGLLEMSRQR 390
>gi|251793108|ref|YP_003007834.1| ribonuclease E [Aggregatibacter aphrophilus NJ8700]
gi|422336643|ref|ZP_16417616.1| hypothetical protein HMPREF9335_00804 [Aggregatibacter aphrophilus
F0387]
gi|247534501|gb|ACS97747.1| ribonuclease E (RNase E) [Aggregatibacter aphrophilus NJ8700]
gi|353346088|gb|EHB90374.1| hypothetical protein HMPREF9335_00804 [Aggregatibacter aphrophilus
F0387]
Length = 959
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 187/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|319779242|ref|YP_004130155.1| ribonuclease E [Taylorella equigenitalis MCE9]
gi|397661482|ref|YP_006502182.1| ribonuclease E [Taylorella equigenitalis ATCC 35865]
gi|317109266|gb|ADU92012.1| Ribonuclease E [Taylorella equigenitalis MCE9]
gi|394349661|gb|AFN35575.1| ribonuclease E [Taylorella equigenitalis ATCC 35865]
Length = 963
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 214/377 (56%), Gaps = 33/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F D+ + H GF P K EV S H GT S+ +
Sbjct: 37 NIYKGVITRIEPSLEACFVDYGQERH-------GFLPFK-EV---SRNYHKSGTDHSRIS 85
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
++ G ++I+QV KE G KG LT Y L R+ +L+ + + G +SR+I
Sbjct: 86 EA------LEVGQELIIQVEKEERGNKGAALTTYISLAGRYLVLMPNNPKGGGISRRIDW 139
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L+ PEG L RT G + EEL DL L+ WK I + A +
Sbjct: 140 EERQELREAMSHLELPEGMSLIARTAGIGRTTEELNWDLTYLMQLWKAIEDAANHYS--- 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
PIL+++ + ++DYF+ + ++++D+ Y +V +++QD+ PD ++
Sbjct: 197 -------APILIYQESSLVIRALRDYFSHDITEILIDTDEIYDQVNAFMQDVMPDNVAKI 249
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F +E +I S+ V LP+GGS+VI+ TEALV++DVN G
Sbjct: 250 KRYRHAVPLFSRFQVEHQIETAYSRHVHLPSGGSIVIDHTEALVAVDVNSARST--RGGD 307
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + N+ AA+++AR+LRLRD+GG+IV+DFIDM D N++ V ++K+A++ DR+ V
Sbjct: 308 IEETAMRTNIEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQKAVESKLKEAIQFDRARV 367
Query: 581 KVSELSRHGLMEITRKR 597
++ ++S+ GLME++R+R
Sbjct: 368 QMGKISKFGLMELSRQR 384
>gi|410641165|ref|ZP_11351688.1| ribonuclease E [Glaciecola chathamensis S18K6]
gi|410139292|dbj|GAC09875.1| ribonuclease E [Glaciecola chathamensis S18K6]
Length = 1084
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 206/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 85 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A S
Sbjct: 143 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD +RV
Sbjct: 200 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFANRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 253 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDRARV 370
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 371 QLGRISRFGLLEMSRQR 387
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|395773144|ref|ZP_10453659.1| ribonuclease, Rne/Rng family [Streptomyces acidiscabies 84-104]
Length = 1260
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 187/307 (60%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 628 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 687
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L W+ I ++AK+ G P
Sbjct: 688 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEEIRKNAKT----------GNAPT 737
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL R+ + + +F
Sbjct: 738 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDEAWQTIHGYVAHVAPDLAGRLSRWTSEVDVF 797
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 798 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 856
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 857 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 916
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 917 VQMTRKR 923
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + +S +VYLG V ++P+
Sbjct: 531 FLARREAVERVMVVRQSHERTQ-IGVLEDGVLVEHYVNKEQSTSYVGNVYLGKVQNVLPS 589
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 590 MEAAFIDIGKGRNAVL 605
>gi|359442984|ref|ZP_09232839.1| ribonuclease E [Pseudoalteromonas sp. BSi20429]
gi|358035192|dbj|GAA69088.1| ribonuclease E [Pseudoalteromonas sp. BSi20429]
Length = 1044
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 181/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA
Sbjct: 154 ALGRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIRQAADSAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|152979495|ref|YP_001345124.1| ribonuclease [Actinobacillus succinogenes 130Z]
gi|150841218|gb|ABR75189.1| ribonuclease, Rne/Rng family [Actinobacillus succinogenes 130Z]
Length = 962
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 IKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERIELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + +++
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHHWEAIKQVSENRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + +++VDSP+ Y + ++++ + PD +R++LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILVDSPKIYEKAKAHIKLVRPDFINRIKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL++ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDATEALIAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|374622268|ref|ZP_09694794.1| ribonuclease E [Ectothiorhodospira sp. PHS-1]
gi|373941395|gb|EHQ51940.1| ribonuclease E [Ectothiorhodospira sp. PHS-1]
Length = 948
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 220/377 (58%), Gaps = 32/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
NV ++ EP EA F ++ E +GF P K E+ S+ + P + S T
Sbjct: 25 NVYKGVVTRVEPSLEAAFVNY-------GAERHGFLPFK-EI-SRSYLNQPDNPEASPKT 75
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 76 -------SLKEGMELIVQVEKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGVSRRIEG 128
Query: 342 VERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER+ ++ +A+ P+G GL RT G S+EELQ DLE L + W +I E A
Sbjct: 129 EERSEIRESLAQLDVPQGMGLIARTAGVGRSVEELQWDLEYLKTLWISIAEAA------- 181
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
E +G P L+++ + ++D+ + ++++D + + + ++Q + P+ ++
Sbjct: 182 -EIRKG--PFLIYQESNVIIRTLRDHMRNDIAEVIIDDAKVFDQARDFVQQVMPNNLRKL 238
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY+ +PLF+++ IE +I + V LP+GG++VI+ TEAL+SIDVN GS
Sbjct: 239 KLYEDHVPLFNRYQIESQIEAAFQREVTLPSGGAIVIDHTEALISIDVNSARAT--KGSD 296
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA++IAR+LRLRD+GG+IV+DFIDMA + N+R V ++ A+E DR+ V
Sbjct: 297 IEETALNTNLEAAEEIARQLRLRDLGGLIVIDFIDMAPNKNQREVENRLRSALEVDRARV 356
Query: 581 KVSELSRHGLMEITRKR 597
+V +SR GL+E++R+R
Sbjct: 357 QVGRISRFGLLEMSRQR 373
>gi|393762071|ref|ZP_10350700.1| ribonuclease [Alishewanella agri BL06]
gi|392607103|gb|EIW89985.1| ribonuclease [Alishewanella agri BL06]
Length = 1032
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 180/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERQELKD 150
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ + P+G GL +RT G S EEL DL+ LL W I E A+ + A
Sbjct: 151 SLGQLEMPDGMGLIVRTAGVGKSYEELDYDLKALLKHWSAITEEAQ----------KRAA 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY V ++++DS + + E Y+Q PD RV++Y +P
Sbjct: 201 PFLIHQESNVVFRAIRDYLRRDVGEILIDSQKIFEEAKVYIQQFRPDFAHRVKMYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + V LP+GGS+VI+ TEAL +ID+N G E+ +
Sbjct: 261 LFMHYQIENQIETAFRREVRLPSGGSIVIDSTEALTAIDINSSKAT--KGGDIEETAFNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV++DR+ V++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLKDAVKQDRARVQIGRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|392534507|ref|ZP_10281644.1| RNase E [Pseudoalteromonas arctica A 37-1-2]
Length = 1058
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 181/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA
Sbjct: 154 ALGRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIRQAADSAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|254508495|ref|ZP_05120614.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus 16]
gi|219548607|gb|EED25613.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus 16]
Length = 996
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 211/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDRARVQIGRISRFGLLEMS 384
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 385 RQRL---------SPS-----LAEASHHICPRCT 404
>gi|332306495|ref|YP_004434346.1| ribonuclease, Rne/Rng family [Glaciecola sp. 4H-3-7+YE-5]
gi|332173824|gb|AEE23078.1| ribonuclease, Rne/Rng family [Glaciecola sp. 4H-3-7+YE-5]
Length = 1087
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 206/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 40 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A S
Sbjct: 146 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD +RV
Sbjct: 203 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFANRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 256 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 314 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDRARV 373
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 374 QLGRISRFGLLEMSRQR 390
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 64 RHGFLPLKEIARTY-FP 79
>gi|148827613|ref|YP_001292366.1| ribonuclease E [Haemophilus influenzae PittGG]
gi|148718855|gb|ABQ99982.1| ribonuclease E [Haemophilus influenzae PittGG]
Length = 935
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/381 (35%), Positives = 208/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------LTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|410646394|ref|ZP_11356845.1| ribonuclease E [Glaciecola agarilytica NO2]
gi|410134000|dbj|GAC05244.1| ribonuclease E [Glaciecola agarilytica NO2]
Length = 1084
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 206/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 85 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A S
Sbjct: 143 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD +RV
Sbjct: 200 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFANRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 253 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDRARV 370
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 371 QLGRISRFGLLEMSRQR 387
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|90579092|ref|ZP_01234902.1| Putative ribonuclease E [Photobacterium angustum S14]
gi|90439925|gb|EAS65106.1| Putative ribonuclease E [Photobacterium angustum S14]
Length = 1094
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 204/365 (55%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K EV D ++ QG + K +++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EVAKDYFPANYSYQGRPNIKEV--------LKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK T
Sbjct: 98 QEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALST 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L P+G GL +RT G S EEL+ DL LL+ W + E A S + P L+
Sbjct: 158 LDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWNAVKEAADSQS----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++DSP+ + +++ + PD RV+ Y+ +PLF
Sbjct: 208 HQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPDFLSRVKRYEGEVPLFSH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I++ + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 YQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
Score = 39.3 bits (90), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEVAKDY-FP 79
>gi|408826924|ref|ZP_11211814.1| ribonuclease, Rne/Rng family [Streptomyces somaliensis DSM 40738]
Length = 1398
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 189/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 733 LKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 792
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W+ I + A++ G P
Sbjct: 793 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIQQKART----------GNAPT 842
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+V+ + + Y+ +APDL +R++ + + +F
Sbjct: 843 LLYGEPDMTVRVVRDIFNEDFSKVVISGDEAWQTIHGYVSHVAPDLANRLQRWTSEVDVF 902
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 903 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 961
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 962 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1021
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1022 VQMTRKR 1028
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 657 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 710
>gi|392551388|ref|ZP_10298525.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Pseudoalteromonas spongiae UST010723-006]
Length = 994
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 207/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ E +GF P K + + + P+G +T + ++ V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIARSYFPEG-----YTFNGRPNIKDVVKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 98 QEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSR 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL+ DL LL W I + ++S G P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSFEELEYDLRALLVHWDAIKKASES----------GPAPFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D R + E ++++ PD +RV+LY PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKQRVFDEAKAHIERFRPDFINRVKLYTGDAPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG++V+DFIDM ++R V ++K+AV+ DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLVVIDFIDMTPPRHQRAVENKLKEAVKPDRARVQIGKISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|260582323|ref|ZP_05850116.1| ribonuclease G and E [Haemophilus influenzae NT127]
gi|260094691|gb|EEW78586.1| ribonuclease G and E [Haemophilus influenzae NT127]
Length = 937
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/381 (35%), Positives = 208/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 42 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 94
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 95 I-----------LTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISR 143
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 144 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 203
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 204 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDF 253
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 254 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 311
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV D
Sbjct: 312 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPD 371
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 372 RARIQISRISRFGLLEMSRQR 392
>gi|113460860|ref|YP_718927.1| ribonuclease E [Haemophilus somnus 129PT]
gi|112822903|gb|ABI24992.1| RNAse E [Haemophilus somnus 129PT]
Length = 942
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 200/351 (56%), Gaps = 29/351 (8%)
Query: 253 ESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGT 308
E +GF P ++ PDD +D + +G +VIVQV KE G
Sbjct: 63 ERHGFLPLKEIAREYFPDDYVYQGRPNIRDI-----------LSEGQEVIVQVNKEERGN 111
Query: 309 KGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTV 366
KG LT + L + +++ + R G +SR+I G ER LK +L PEG GL +RT
Sbjct: 112 KGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKEALSSLDVPEGVGLIVRTA 171
Query: 367 AAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDY 426
G S EELQ DL+ LL W+ I + ++S P L+H+ + ++DY
Sbjct: 172 GVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APFLIHQESDVIVRAIRDY 221
Query: 427 FNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKR 486
+ ++++DSP+ Y + ++++ + PD +RV+LY +PLF + IE +I + +
Sbjct: 222 LRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQRE 281
Query: 487 VPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIG 546
V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL AA +IAR+LRLRD+G
Sbjct: 282 VRLPSGGSIVIDATEALTAIDINSARST--RGGDIEETALNTNLEAADEIARQLRLRDLG 339
Query: 547 GIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
G+IV+DFIDM ++R V +++AV +DR+ +++S +SR GL+E++R+R
Sbjct: 340 GLIVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRFGLLEMSRQR 390
>gi|350531919|ref|ZP_08910860.1| ribonuclease E [Vibrio rotiferianus DAT722]
Length = 1011
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 210/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFINRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|89073416|ref|ZP_01159940.1| Putative ribonuclease E [Photobacterium sp. SKA34]
gi|89050903|gb|EAR56377.1| Putative ribonuclease E [Photobacterium sp. SKA34]
Length = 1094
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 204/365 (55%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K EV D ++ QG + K +++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EVAKDYFPANYSYQGRPNIKEV--------LKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK T
Sbjct: 98 QEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALST 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L P+G GL +RT G S EEL+ DL LL+ W + E A S + P L+
Sbjct: 158 LDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWNAVKEAADSQS----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++DSP+ + +++ + PD RV+ Y+ +PLF
Sbjct: 208 HQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPDFLSRVKRYEGEVPLFSH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I++ + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 YQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEVAKDY-FP 79
>gi|126668126|ref|ZP_01739088.1| Ribonucleases G and E [Marinobacter sp. ELB17]
gi|126627396|gb|EAZ98031.1| Ribonucleases G and E [Marinobacter sp. ELB17]
Length = 1092
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 189/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT Y L R+ +L+ + R G +SR+I G ER +LK
Sbjct: 95 IAEGQEVIVQVDKEERGNKGAALTTYISLAGRYLVLMPNNARAGGISRRIEGEERAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNQVQVPKSMGIIVRTAGIGRNSEELQWDLDYLVQFWEAITQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ + +V ++++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDAAAVHEDVLNFVRAVMPTFENKIKLYSDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N GH E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRATKGH--DIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRD+GG+IV+DFIDM N+R V ++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQREVENKMREALEIDRARVQVGKISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
>gi|411005716|ref|ZP_11382045.1| ribonuclease, Rne/Rng family, partial [Streptomyces globisporus
C-1027]
Length = 1015
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 190/308 (61%), Gaps = 10/308 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 349 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 408
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 409 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAK--------GTSGSNAP 460
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 461 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRWTSEVDV 520
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + N
Sbjct: 521 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTRNN 579
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 580 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 639
Query: 590 LMEITRKR 597
L+++TRKR
Sbjct: 640 LVQMTRKR 647
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 273 QIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 326
>gi|357413469|ref|YP_004925205.1| ribonuclease, Rne/Rng family [Streptomyces flavogriseus ATCC 33331]
gi|320010838|gb|ADW05688.1| ribonuclease, Rne/Rng family [Streptomyces flavogriseus ATCC 33331]
Length = 1397
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 188/307 (61%), Gaps = 8/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 737 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 796
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L W+ I + AK+ + + P
Sbjct: 797 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEEIQKKAKNTSSSN-------APT 849
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 850 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTDRLSRWTSEVDVF 909
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 910 ATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTKNNL 968
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 969 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1028
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1029 VQMTRKR 1035
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 640 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 698
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 699 MEAAFVDIGKGRNAVL 714
>gi|302560669|ref|ZP_07313011.1| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces griseoflavus Tu4000]
gi|302478287|gb|EFL41380.1| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces griseoflavus Tu4000]
Length = 556
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 190/307 (61%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 200 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 259
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W+ I + +K+ A G+ P
Sbjct: 260 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIKKKSKNGA--------GSAPT 311
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + V Y+ +APDL +R+ + + +F
Sbjct: 312 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWETVHGYVSHVAPDLAERLSRWTSEVDVF 371
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 372 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 430
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 431 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 490
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 491 VQMTRKR 497
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 124 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 177
>gi|184200774|ref|YP_001854981.1| putative ribonuclease [Kocuria rhizophila DC2201]
gi|183581004|dbj|BAG29475.1| putative ribonuclease [Kocuria rhizophila DC2201]
Length = 1145
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 184/307 (59%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER RLK I
Sbjct: 420 LKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGGSMTGISRKLPDVERQRLKKI 479
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K PEG G+ +RT A G S EL D+ L S W+ I E A S A P
Sbjct: 480 LKDRLPEGAGVIVRTAAEGASETELTNDINRLRSQWEQIQEKAGSTKTLA--------PE 531
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ V+D FNE MVV + + + +Y+ +APDL DR++ + + LF
Sbjct: 532 LLYAEPDLTIKTVRDVFNEDFTAMVVQGEQAWDNIEAYVTYVAPDLLDRLQRWTEDEDLF 591
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ +EE+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 592 EHMRVEEQIQKALERKVFLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNL 650
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 651 EAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGL 710
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 711 VQMTRKR 717
>gi|317124517|ref|YP_004098629.1| RNAse G [Intrasporangium calvum DSM 43043]
gi|315588605|gb|ADU47902.1| RNAse G [Intrasporangium calvum DSM 43043]
Length = 1012
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 191/320 (59%), Gaps = 14/320 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
+ G V+VQV K+ +G KG LT+ L R+ + + + G+SRK+ ER RLK I
Sbjct: 481 LSSGQSVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPNSSMTGISRKLPDTERARLKKI 540
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAAL------------ 398
+ + P+ G+ +RT A G S EEL+ D+E L TW++I A+ +
Sbjct: 541 LREVVPDSAGVIVRTAAEGASEEELRADVERLSRTWEDIRARAELSGTPRAGKSKGRKKN 600
Query: 399 -AADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLC 457
+ G+ P+LLH T+ +++D FNE K++VV + ++E+ Y+ +APDL
Sbjct: 601 GSPGSAPTGSAPLLLHGEPDLTVRVIRDVFNEDFKQLVVAGDQAWNEIHPYISSVAPDLA 660
Query: 458 DRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGH 517
DRV + LF ++E++ + ++V LP+GGSLVI++TEA+ +DVN G G
Sbjct: 661 DRVSRWTAEEDLFTHHRVDEQLAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGS 719
Query: 518 GSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDR 577
G + E+ + NL AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR
Sbjct: 720 GGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVVRRLLECLGRDR 779
Query: 578 SMVKVSELSRHGLMEITRKR 597
+ +V+E++ GL+++TRKR
Sbjct: 780 TKHQVAEVTSLGLVQMTRKR 799
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q + VLED LVE ++ + ++YLG V ++P+
Sbjct: 383 FLARREAVDRVMVVRNKEGRTQ-MGVLEDGVLVEHYIDQATNVSMAGNIYLGRVQNVLPS 441
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 442 MEAAFVDIGKGRNAVL 457
>gi|414068910|ref|ZP_11404907.1| ribonuclease E [Pseudoalteromonas sp. Bsw20308]
gi|410808749|gb|EKS14718.1| ribonuclease E [Pseudoalteromonas sp. Bsw20308]
Length = 1061
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 181/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA
Sbjct: 154 ALGRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIGQAADSAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|375111673|ref|ZP_09757877.1| ribonuclease [Alishewanella jeotgali KCTC 22429]
gi|374568309|gb|EHR39488.1| ribonuclease [Alishewanella jeotgali KCTC 22429]
Length = 1048
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 180/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERQELKD 150
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ + P+G GL +RT G S EEL DL+ LL W I E A+ + A
Sbjct: 151 SLGQLEMPDGMGLIVRTAGVGKSYEELDYDLKALLKHWSAITEEAQ----------KRAA 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY V ++++DS + + E Y+Q PD RV++Y +P
Sbjct: 201 PFLIHQESNVVFRAIRDYLRRDVGEILIDSQKIFEEAKVYIQQFRPDFAHRVKMYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + V LP+GGS+VI+ TEAL +ID+N G E+ +
Sbjct: 261 LFMHYQIENQIETAFRREVRLPSGGSIVIDSTEALTAIDINSSKAT--KGGDIEETAFNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV++DR+ V++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLKDAVKQDRARVQIGRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|323499351|ref|ZP_08104327.1| ribonuclease E [Vibrio sinaloensis DSM 21326]
gi|323315536|gb|EGA68571.1| ribonuclease E [Vibrio sinaloensis DSM 21326]
Length = 1001
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 203/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|440704039|ref|ZP_20884928.1| ribonuclease, Rne/Rng family, partial [Streptomyces turgidiscabies
Car8]
gi|440274357|gb|ELP62940.1| ribonuclease, Rne/Rng family, partial [Streptomyces turgidiscabies
Car8]
Length = 1131
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 188/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 602 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 661
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K G P
Sbjct: 662 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIEKKSKG----------GNAPT 711
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 712 LLYGEPDMTVRVVRDIFNEDFTKVIVSGDEAWQTIHGYVSHVAPDLVDRLSKWTSEVDVF 771
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 772 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 830
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 831 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 890
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 891 VQMTRKR 897
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 526 QIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 579
>gi|290960391|ref|YP_003491573.1| hypothetical protein SCAB_60141 [Streptomyces scabiei 87.22]
gi|260649917|emb|CBG73033.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 1369
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 190/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 704 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 763
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K+ G P
Sbjct: 764 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKN----------GNAPT 813
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R++ + + +F
Sbjct: 814 LLYGEPDMTVRVVRDIFNEDFSKVIVSGEEAWETIHGYVSHVAPDLAERLQKWTSEVDVF 873
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 874 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 932
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 933 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 992
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 993 VQMTRKR 999
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKL 123
+ +++ V V+++ S Q I VLED LVE + +S +VYLG V +
Sbjct: 604 EAEFLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNV 662
Query: 124 VPNMGGAFVNIGNSRPSLM 142
+P+M AF++IG R +++
Sbjct: 663 LPSMEAAFIDIGKGRNAVL 681
>gi|229846500|ref|ZP_04466608.1| hydroxyethylthiazole kinase [Haemophilus influenzae 7P49H1]
gi|229810593|gb|EEP46311.1| hydroxyethylthiazole kinase [Haemophilus influenzae 7P49H1]
Length = 935
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 135/381 (35%), Positives = 208/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------LTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|397170413|ref|ZP_10493829.1| ribonuclease [Alishewanella aestuarii B11]
gi|396088080|gb|EJI85674.1| ribonuclease [Alishewanella aestuarii B11]
Length = 1044
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 180/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERQELKD 150
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ + P+G GL +RT G S EEL DL+ LL W I E A+ + A
Sbjct: 151 SLGQLEMPDGMGLIVRTAGVGKSYEELDYDLKALLKHWSAITEEAQ----------KRAA 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY V ++++DS + + E Y+Q PD RV++Y +P
Sbjct: 201 PFLIHQESNVVFRAIRDYLRRDVGEILIDSQKIFEEAKVYIQQFRPDFAHRVKMYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + V LP+GGS+VI+ TEAL +ID+N G E+ +
Sbjct: 261 LFMHYQIENQIETAFRREVRLPSGGSIVIDSTEALTAIDINSSKAT--KGGDIEETAFNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV++DR+ V++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLKDAVKQDRARVQIGRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|213963165|ref|ZP_03391423.1| ribonuclease, Rne/Rng family [Capnocytophaga sputigena Capno]
gi|213954249|gb|EEB65573.1| ribonuclease, Rne/Rng family [Capnocytophaga sputigena Capno]
Length = 514
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 193/316 (61%), Gaps = 14/316 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQ 355
++VQ+VKE + TKGP +++ + R+ +L+ DRI +S+KI G E+ RL+ + + ++
Sbjct: 122 ILVQIVKEPISTKGPRISSELSIAGRYLVLVPFSDRISISQKIEGKAEKERLRKLLQGIK 181
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFG+ +RTVA G + EL KDL+GL + W L + + P +
Sbjct: 182 PKGFGVIVRTVAEGKKVAELDKDLQGLFNRW----------VLMCRKIQKAVYPSKVMSE 231
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
+ +T +I++D FN+ + VD+ Y ++ Y+++IAP+ + V+LY +P+F+KF+I
Sbjct: 232 VSKTGAILRDMFNDTFTGIHVDNEHLYEQIKKYVREIAPEKENIVKLYHSSVPIFEKFHI 291
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V +P G LVIE TEAL IDVN G+ + +E L VNL AA +
Sbjct: 292 ERQIKTAFGRTVSMPKGAYLVIEHTEALHVIDVNSGNHS-NKNNDQETTALSVNLIAATE 350
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
IAR+LRLRD+GGIIVVDFIDM + N+R++++ ++ + DR+ K+ S+ GL++ITR
Sbjct: 351 IARQLRLRDMGGIIVVDFIDMGNSENRRILFDHLRNEMAEDRAKHKILPPSKFGLIQITR 410
Query: 596 KRAMMEQ--KADPENP 609
+R E K ENP
Sbjct: 411 QRVRQELNIKTKEENP 426
>gi|170717347|ref|YP_001784456.1| ribonuclease [Haemophilus somnus 2336]
gi|168825476|gb|ACA30847.1| ribonuclease, Rne/Rng family [Haemophilus somnus 2336]
Length = 942
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 200/351 (56%), Gaps = 29/351 (8%)
Query: 253 ESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGT 308
E +GF P ++ PDD +D + +G +VIVQV KE G
Sbjct: 63 ERHGFLPLKEIAREYFPDDYVYQGRPNIRDI-----------LSEGQEVIVQVNKEERGN 111
Query: 309 KGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTV 366
KG LT + L + +++ + R G +SR+I G ER LK +L PEG GL +RT
Sbjct: 112 KGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKEALSSLDVPEGVGLIVRTA 171
Query: 367 AAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDY 426
G S EELQ DL+ LL W+ I + ++S P L+H+ + ++DY
Sbjct: 172 GVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APFLIHQESDVIVRAIRDY 221
Query: 427 FNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKR 486
+ ++++DSP+ Y + ++++ + PD +RV+LY +PLF + IE +I + +
Sbjct: 222 LRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFRRE 281
Query: 487 VPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIG 546
V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL AA +IAR+LRLRD+G
Sbjct: 282 VRLPSGGSIVIDATEALTAIDINSARST--RGGDIEETALNTNLEAADEIARQLRLRDLG 339
Query: 547 GIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
G+IV+DFIDM ++R V +++AV +DR+ +++S +SR GL+E++R+R
Sbjct: 340 GLIVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRFGLLEMSRQR 390
>gi|343519510|ref|ZP_08756490.1| ribonuclease E RNase E (first module) [Haemophilus pittmaniae HK
85]
gi|343392580|gb|EGV05145.1| ribonuclease E RNase E (first module) [Haemophilus pittmaniae HK
85]
Length = 848
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 2 LKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERIELKE 61
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 62 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASESRP----------A 111
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ + + S+++ + PD +RV+LY +P
Sbjct: 112 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKSHIKLVRPDFINRVKLYQGEVP 171
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 172 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 229
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 230 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 289
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 290 GLLEMSRQR 298
>gi|77360756|ref|YP_340331.1| RNase E [Pseudoalteromonas haloplanktis TAC125]
gi|76875667|emb|CAI86888.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
deoxyribonucleotides via the formation of NDPs
[Pseudoalteromonas haloplanktis TAC125]
Length = 1071
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I +AAD
Sbjct: 154 SLSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAI-------GVAADSA---KA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAVRPDRARVQIGKISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|410617785|ref|ZP_11328750.1| ribonuclease E [Glaciecola polaris LMG 21857]
gi|410162916|dbj|GAC32888.1| ribonuclease E [Glaciecola polaris LMG 21857]
Length = 1049
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 205/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 85 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A S
Sbjct: 143 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD RV
Sbjct: 200 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFASRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 253 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA ++AR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLKDAVRHDRARV 370
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 371 QLGRISRFGLLEMSRQR 387
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|410637065|ref|ZP_11347653.1| ribonuclease E [Glaciecola lipolytica E3]
gi|410143444|dbj|GAC14858.1| ribonuclease E [Glaciecola lipolytica E3]
Length = 1011
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 138/378 (36%), Positives = 211/378 (55%), Gaps = 32/378 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK-DSKH 281
N+ I EP EA F D+ D H GF P K + + T PQG K D +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDYG-ADRH------GFLPLK----EIAKTYFPQGYKFDGR- 84
Query: 282 TPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT 340
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I
Sbjct: 85 -PSIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE 141
Query: 341 GVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALA 399
G ERT LK ++K P+G GL +RT G S EEL+ DL L+ W I E +++ A
Sbjct: 142 GDERTDLKQSLSKLELPDGMGLIVRTAGVGKSYEELEHDLNVLIRHWNAISEASETKA-- 199
Query: 400 ADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
P L+H+ + ++DY V ++++DS Y + ++Q + PD +R
Sbjct: 200 --------APFLIHQESNVIVRAIRDYLRRDVGEILIDSQEVYEKALQHIQLVRPDFANR 251
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
V+LY +PLF + IE +I + + V LP+GGS+VI+ TEA++SID+N G
Sbjct: 252 VKLYKGDVPLFSHYQIETQIESAFQREVRLPSGGSIVIDPTEAMISIDINSARAT--KGG 309
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E+ + NL AA +IAR+LRLRD GG++V+DFIDM ++R V +K+AV DR+
Sbjct: 310 DIEETAFNTNLEAADEIARQLRLRDAGGLVVIDFIDMTPVRHQREVENRLKEAVRHDRAR 369
Query: 580 VKVSELSRHGLMEITRKR 597
+++ +SR GL+E++R+R
Sbjct: 370 IQLGRISRFGLLEMSRQR 387
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAD 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 61 RHGFLPLKEIAKTY-FP 76
>gi|269102255|ref|ZP_06154952.1| ribonuclease E [Photobacterium damselae subsp. damselae CIP 102761]
gi|268162153|gb|EEZ40649.1| ribonuclease E [Photobacterium damselae subsp. damselae CIP 102761]
Length = 1095
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 137/398 (34%), Positives = 208/398 (52%), Gaps = 50/398 (12%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P +K P D QG + K ++
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIAKEYFPQDYSY---QGRPNIKEV--------LK 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK
Sbjct: 93 EGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAAL 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
TL+ P G GL +RT G S EEL+ DL LL+ W + E A + P
Sbjct: 153 STLELPHGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAVKEAADAQP----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ ++DY + ++++DSP+ + +++ + PD RV+ Y+ +PLF
Sbjct: 203 LIHQESNVIARAIRDYLRRDIGEILIDSPKIFERARDHIKLVRPDFISRVKRYEGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALQTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGL 380
Query: 591 MEITRKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
+E++R+R +P + HH+C T
Sbjct: 381 LEMSRQRL---------SPS-----LAEASHHVCPRCT 404
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 61 RHGFLPLKEIAKEY-FP 76
>gi|113970740|ref|YP_734533.1| RNAse E [Shewanella sp. MR-4]
gi|113885424|gb|ABI39476.1| RNAse E [Shewanella sp. MR-4]
Length = 1093
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 180/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A+S A
Sbjct: 154 AMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQHHWAAITEAAQS----------KAA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|429739486|ref|ZP_19273240.1| S1 RNA binding domain protein [Prevotella saccharolytica F0055]
gi|429156875|gb|EKX99494.1| S1 RNA binding domain protein [Prevotella saccharolytica F0055]
Length = 524
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 214/385 (55%), Gaps = 21/385 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK- 277
V +++ +N S +D G F +L+ L + + + +V D +P
Sbjct: 46 VKKLMPGLNASFVDVGFERDAFLHYLD----LGSQFDSYAKYLKQVQSDRKKLYPFAKAS 101
Query: 278 ---DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ+VKE + TKGP LT R+ ILI D++
Sbjct: 102 RLPDLKKDGSVQNTLSV--GQEVLVQIVKEPISTKGPRLTCELSFAGRYLILIPFNDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L + W+N +E
Sbjct: 160 VSSKIKSGEERARLKQLIHSIKPKNCGVIVRTVAEGKRVAELDAELKTLTACWENALEKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ P L+ G+ +++++D FN + + V+ + EV Y+ IA
Sbjct: 220 QKTQ---------KRPQLVFEETGRAVALLRDLFNPTYENIYVNDEDVFKEVKHYVSMIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
PD + V+LYD ++P+FD FNI ++I + K V +G L+IE TEAL +DVN G+
Sbjct: 271 PDKVNIVKLYDGKVPIFDNFNITKQIKSSFGKAVNYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ + A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 IRSEKGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRA 598
+ DR+ + LS+ GLM+ITR+R
Sbjct: 390 QSDRARHNILPLSKFGLMQITRQRV 414
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+KLVE EP + + +VY+ V KL+P + +FV++G R + + HY
Sbjct: 16 IALLEDKKLVEYQNEPREVSFSVGNVYVAKVKKLMPGLNASFVDVGFERDAFL---HY 70
>gi|377573792|ref|ZP_09802845.1| hypothetical protein MOPEL_032_00520 [Mobilicoccus pelagius NBRC
104925]
gi|377537524|dbj|GAB48010.1| hypothetical protein MOPEL_032_00520 [Mobilicoccus pelagius NBRC
104925]
Length = 1183
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 185/307 (60%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
+ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 537 LSNGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPDGSMTGISRKLPDTERARLKKI 596
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P+ G+ +RT A G S EL D+E L W+ I + AK+ G P+
Sbjct: 597 LKQIVPDDAGVIVRTAAEGASEAELTADVERLQRAWEKIQKKAKT----------GNAPV 646
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LLH T +V+D FNE K+VV + ++ Y++ +APDL DR+E + +F
Sbjct: 647 LLHGEADLTTRVVRDVFNEDFTKLVVSGEVAWESISDYVESVAPDLADRLERWTGEKDVF 706
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ ++E+I + ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + N+
Sbjct: 707 AEYRVDEQIAKAMDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTKNNI 765
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGI+VVDFIDM ++N+ LV + + + RDR+ +V+E++ GL
Sbjct: 766 EAAEEIVRQLRLRDIGGIVVVDFIDMVLEANRELVVRRLVECLGRDRTKHQVAEVTSLGL 825
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 826 VQMTRKR 832
>gi|388257069|ref|ZP_10134249.1| ribonuclease, Rne/Rng family protein [Cellvibrio sp. BR]
gi|387939273|gb|EIK45824.1| ribonuclease, Rne/Rng family protein [Cellvibrio sp. BR]
Length = 939
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 203/363 (55%), Gaps = 27/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K E+ + T +P G D + K +++GT+
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EISREYFTKNP-GDSDGRI----KIKDVLKEGTE 100
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L R+ +L+ + R G +SR+I G +R LK + +
Sbjct: 101 VIVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEDRAELKDALGEVE 160
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P G G+ IRT G S EELQ DL LL W++I AK++ P L +
Sbjct: 161 VPNGMGVIIRTAGVGRSSEELQWDLNYLLQLWESIATAAKTSP----------APAFLFQ 210
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + V +++VD+ + ++Q + P+ +V+LY IPLF+++
Sbjct: 211 ESNVIIRAIRDYLRQDVGEVIVDNQEAFDLAAGFIQQVMPNYRSKVKLYKDDIPLFNRYQ 270
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALV+ID+N G E+ L NL AA
Sbjct: 271 IESQIETAFQREVKLPSGGSIVIDATEALVAIDINSSRAT--KGGDIEETALQTNLEAAD 328
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG+IV+DFIDM N+R V V+ A+ DR+ V++ +SR GLME++
Sbjct: 329 EIARQLRLRDMGGLIVIDFIDMQPVRNQREVENRVRDALMMDRARVQIGRISRFGLMEMS 388
Query: 595 RKR 597
R+R
Sbjct: 389 RQR 391
>gi|54308379|ref|YP_129399.1| ribonuclease E [Photobacterium profundum SS9]
gi|46912807|emb|CAG19597.1| Putative ribonuclease E [Photobacterium profundum SS9]
Length = 1100
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 211/396 (53%), Gaps = 46/396 (11%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K EV D ++ QG + K +++G
Sbjct: 54 EAAFVDY-------GSERHGFLPLK-EVARDYFPANYTYQGRPNIKEV--------LKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK T
Sbjct: 98 QEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALST 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL+ DL LL+ W + E A S + P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAVKEAADS----------NSAPFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++DSP+ + +++ I PD RV+ Y+ +PLF
Sbjct: 208 HQESNVIARAIRDYLRRDIGEILIDSPKIFDRAREHIKLIRPDFLSRVKRYEGEVPLFSH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETAFQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 326 ADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 385
Query: 593 ITRKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
++R+R +P + HH+C T
Sbjct: 386 MSRQRL---------SPS-----LAEASHHVCPRCT 407
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 64 RHGFLPLKEVARDY-FP 79
>gi|344999604|ref|YP_004802458.1| ribonuclease, Rne/Rng family [Streptomyces sp. SirexAA-E]
gi|344315230|gb|AEN09918.1| ribonuclease, Rne/Rng family [Streptomyces sp. SirexAA-E]
Length = 1430
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 184/307 (59%), Gaps = 8/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 760 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 819
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L W I + AK P
Sbjct: 820 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWDEIQQKAKGT-------TSSNAPT 872
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 873 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSQVAPDLSDRLSRWTSEVDVF 932
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 933 ATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTKNNL 991
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 992 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1051
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1052 VQMTRKR 1058
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 663 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 721
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 722 MEAAFVDIGKGRNAVL 737
>gi|294629329|ref|ZP_06707889.1| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces sp. e14]
gi|292832662|gb|EFF91011.1| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces sp. e14]
Length = 813
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 188/307 (61%), Gaps = 10/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 365 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 424
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L + W+ I + +K+ G+ P
Sbjct: 425 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWEEIKKKSKNG---------GSAPT 475
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL R+ + + +F
Sbjct: 476 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAPDLAPRLSRWTSEVDVF 535
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 536 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 594
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 595 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 654
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 655 VQMTRKR 661
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED+ LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 289 QIGVLEDDVLVEHYVNKEQAVSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 342
>gi|330446423|ref|ZP_08310075.1| ribonuclease E [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490614|dbj|GAA04572.1| ribonuclease E [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 1105
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 211/396 (53%), Gaps = 46/396 (11%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ D ++ QG + K +++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIAKDYFPANYSYQGRPNIKEV--------LKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK T
Sbjct: 98 QEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALST 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L P+G GL +RT G S EEL+ DL LL+ W + E A S P L+
Sbjct: 158 LDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWNAVKEAADSQP----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++DSP+ + +++ + PD RV+ Y+ +PLF
Sbjct: 208 HQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPDFLSRVKRYEGEVPLFSH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I++ + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 YQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 385
Query: 593 ITRKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
++R+R +P + HH+C T
Sbjct: 386 MSRQRL---------SPS-----LAEASHHVCPRCT 407
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEIAKDY-FP 79
>gi|68249015|ref|YP_248127.1| ribonuclease E [Haemophilus influenzae 86-028NP]
gi|68057214|gb|AAX87467.1| ribonuclease E [Haemophilus influenzae 86-028NP]
Length = 951
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 135/381 (35%), Positives = 208/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 56 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 108
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 109 I-----------LTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISR 157
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 158 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 217
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 218 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDF 267
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 268 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 325
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV D
Sbjct: 326 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPD 385
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 386 RARIQISRISRFGLLEMSRQR 406
>gi|90407029|ref|ZP_01215219.1| ribonuclease E [Psychromonas sp. CNPT3]
gi|90311900|gb|EAS39995.1| ribonuclease E [Psychromonas sp. CNPT3]
Length = 984
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 205/363 (56%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + S P G K P K +++G +
Sbjct: 54 EAAFVDY-GADRH------GFLPLK----EISRNYFPNGY-SFKGRPNIKEV--IKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT+LK L+
Sbjct: 100 VIIQIEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKEALSHLK 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P G GL +RT G + EEL+ DL L++ W I E +KS + P L+HR
Sbjct: 160 LPNGMGLIVRTAGVGKTAEELEWDLNVLVNHWHAIDEASKSKS----------APFLIHR 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++V+D +T+ + +++ + PD DR++LY IPLF +
Sbjct: 210 ESNVIVRSIRDYLRRDIGEIVIDHAKTFEQAKKHIEMVRPDYIDRLKLYQGEIPLFTYYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
+E +I + + V LP+GGS+VI+ TEAL SID+N G E+ + NL AA+
Sbjct: 270 VESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--RGGDIEETAFNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++++V +DR+ +++ +SR GLME++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPARHQREVENRMRESVRQDRARIQLGRISRFGLMEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|256820306|ref|YP_003141585.1| Rne/Rng family ribonuclease [Capnocytophaga ochracea DSM 7271]
gi|315223335|ref|ZP_07865194.1| ribonuclease G [Capnocytophaga ochracea F0287]
gi|393779220|ref|ZP_10367467.1| ribonuclease E/G family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|420150952|ref|ZP_14658105.1| ribonuclease E/G family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|420158979|ref|ZP_14665790.1| ribonuclease E/G family protein [Capnocytophaga ochracea str. Holt
25]
gi|429747098|ref|ZP_19280399.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429757277|ref|ZP_19289817.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 324
str. F0483]
gi|256581889|gb|ACU93024.1| ribonuclease, Rne/Rng family [Capnocytophaga ochracea DSM 7271]
gi|314946666|gb|EFS98655.1| ribonuclease G [Capnocytophaga ochracea F0287]
gi|392610678|gb|EIW93451.1| ribonuclease E/G family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|394751135|gb|EJF34934.1| ribonuclease E/G family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394763016|gb|EJF45176.1| ribonuclease E/G family protein [Capnocytophaga ochracea str. Holt
25]
gi|429164139|gb|EKY06292.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429168973|gb|EKY10769.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 324
str. F0483]
Length = 514
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 193/316 (61%), Gaps = 14/316 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQ 355
++VQ+VKE + TKGP +++ + R+ +L+ DRI +S+KI G E+ RL+ + + ++
Sbjct: 122 ILVQIVKEPISTKGPRISSELSIAGRYLVLVPFSDRISISQKIEGKAEKERLRKLLQGIK 181
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFG+ +RTVA G + EL KDL+ L + W + + A P +
Sbjct: 182 PKGFGVIVRTVAEGKKVAELDKDLQSLFNRWVLMCRKIQKAVF----------PSKVMSE 231
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
+ +T +I++D FN+ + VD+ + Y ++ Y+Q+IAP+ + V+LY +P+F+KF+I
Sbjct: 232 VNKTGAILRDMFNDSFTGIHVDNEQLYEQIKKYVQEIAPEKENIVKLYHSSVPIFEKFHI 291
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V +P G LVIE TEAL IDVN G+ + +E L VNL AA +
Sbjct: 292 ERQIKTAFGRTVSMPKGAYLVIEHTEALHVIDVNSGNHS-NKNNDQETTALSVNLIAATE 350
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
IAR+LRLRD+GGIIVVDFIDM + N+R++++ ++ + DR+ K+ S+ GL++ITR
Sbjct: 351 IARQLRLRDMGGIIVVDFIDMGNSENRRVLFDHLRNEMAEDRAKHKILPPSKFGLIQITR 410
Query: 596 KRAMMEQ--KADPENP 609
+R E K ENP
Sbjct: 411 QRVRQELNIKTKEENP 426
>gi|429748392|ref|ZP_19281587.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 332
str. F0381]
gi|429171149|gb|EKY12786.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 332
str. F0381]
Length = 513
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 195/316 (61%), Gaps = 14/316 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQ 355
++VQ+VKE + TKGP +++ + R+ +L+ DRI +S+KI + E+ RL+ + ++++
Sbjct: 122 ILVQIVKEPISTKGPRISSELSIAGRYLVLVPFSDRISISQKIGSRTEKERLRKLLQSIK 181
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFG+ +RTVA G + EL KDL+ L + W L + + P +
Sbjct: 182 PKGFGVIVRTVAEGKKVAELDKDLQNLFNRW----------VLMCRKIQKATYPSKVMSE 231
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
+ +T +I++D FN+ + VD+ + Y ++ Y+Q+IAP+ + V+LY +P+F+KF+I
Sbjct: 232 VNRTGAILRDMFNDTFTAIQVDNEQLYEQIKKYVQEIAPEKENIVKLYRSSVPIFEKFHI 291
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V +P G LVIE TEAL IDVN G+ + +E L VNL AA +
Sbjct: 292 ERQIKTAFGRTVSMPKGAYLVIEHTEALHVIDVNSGNHS-NKNNDQEATALSVNLIAATE 350
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
IAR+LRLRD+GGIIVVDFIDM++ N+R++++ ++ + DR+ K+ S+ GL++ITR
Sbjct: 351 IARQLRLRDMGGIIVVDFIDMSNSDNRRILFDHLRDEMAEDRAKHKILPPSKFGLIQITR 410
Query: 596 KRAMMEQ--KADPENP 609
+R E K ENP
Sbjct: 411 QRVRQELNIKTKEENP 426
>gi|345855799|ref|ZP_08808445.1| ribonuclease E [Streptomyces zinciresistens K42]
gi|345632735|gb|EGX54596.1| ribonuclease E [Streptomyces zinciresistens K42]
Length = 941
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 190/307 (61%), Gaps = 8/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 414 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 473
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K+ G P
Sbjct: 474 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIRKKSKN-------GGSSNAPS 526
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + V Y+ +APDL +R++ + + +F
Sbjct: 527 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWDTVHGYVSHVAPDLAERLQKWTSEVDVF 586
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 587 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 645
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 646 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 705
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 706 VQMTRKR 712
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 338 QIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 391
>gi|167623697|ref|YP_001673991.1| ribonuclease [Shewanella halifaxensis HAW-EB4]
gi|167353719|gb|ABZ76332.1| ribonuclease, Rne/Rng family [Shewanella halifaxensis HAW-EB4]
Length = 1099
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 137/377 (36%), Positives = 207/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + P+G +
Sbjct: 50 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIAREYFPKGY-SFQGR 97
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 98 PSIKEV--IKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 155
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L+ P+G GL +RT G EL+ DL+ L W I E A+SA
Sbjct: 156 DERTELKAALAELEVPQGMGLIVRTAGVGKDPAELKWDLKVLQHHWAAIKEAAESAP--- 212
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY V ++++D PR Y + ++ + PD +R+
Sbjct: 213 -------APFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVRPDFVERI 265
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ YD +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 266 KRYDAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 323
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V + ++ AV DR+ V
Sbjct: 324 IEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHHDRARV 383
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GLME++R+R
Sbjct: 384 QLGRISRFGLMEMSRQR 400
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 66 SLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVP 125
+ I K+ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P
Sbjct: 2 TFIKKNYVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEP 61
Query: 126 NMGGAFVNIGNSRPSLMDIKHYREPFIFP 154
++ AFV+ G R + +K + FP
Sbjct: 62 SLEAAFVDYGAERHGFLPLKEIAREY-FP 89
>gi|417319415|ref|ZP_12105973.1| ribonuclease E [Vibrio parahaemolyticus 10329]
gi|328474605|gb|EGF45410.1| ribonuclease E [Vibrio parahaemolyticus 10329]
Length = 1003
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFINRVKKYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|91793654|ref|YP_563305.1| ribonuclease [Shewanella denitrificans OS217]
gi|91715656|gb|ABE55582.1| RNAse E [Shewanella denitrificans OS217]
Length = 1102
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 180/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
VQ+G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VQEGQQVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++S
Sbjct: 154 AMADLEVPNGMGLIVRTAGVGKEANELKWDLKVLQHHWDAIQEASQSQN----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIGLVRPDFVERVKLYESEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|407687473|ref|YP_006802646.1| RNase E [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407290853|gb|AFT95165.1| RNase E [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 1134
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 205/363 (56%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T P+G K + P K +++G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIARTYFPKGYK-FEGRPNIKDV--IKEGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK ++K
Sbjct: 97 VIVQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLD 156
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEG GL +RT G S EEL+ DL+ LL+ W+ I A+ E P L+H+
Sbjct: 157 LPEGMGLIVRTAGVGKSYEELEWDLKVLLTHWEAISSVAE----------EREAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++D Y + ++Q + PD +RV+LY +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFANRVKLYRGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|417953176|ref|ZP_12596224.1| ribonuclease E [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342817708|gb|EGU52585.1| ribonuclease E [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 986
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 210/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++ I PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHISLIRPDFVSRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ +V DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|28898836|ref|NP_798441.1| ribonuclease E [Vibrio parahaemolyticus RIMD 2210633]
gi|153839695|ref|ZP_01992362.1| ribonuclease E [Vibrio parahaemolyticus AQ3810]
gi|260879490|ref|ZP_05891845.1| ribonuclease E [Vibrio parahaemolyticus AN-5034]
gi|260898211|ref|ZP_05906707.1| ribonuclease E [Vibrio parahaemolyticus Peru-466]
gi|260899348|ref|ZP_05907743.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus
AQ4037]
gi|28807055|dbj|BAC60325.1| ribonuclease E [Vibrio parahaemolyticus RIMD 2210633]
gi|149746788|gb|EDM57776.1| ribonuclease E [Vibrio parahaemolyticus AQ3810]
gi|308088384|gb|EFO38079.1| ribonuclease E [Vibrio parahaemolyticus Peru-466]
gi|308093512|gb|EFO43207.1| ribonuclease E [Vibrio parahaemolyticus AN-5034]
gi|308110270|gb|EFO47810.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus
AQ4037]
Length = 1023
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFINRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|261253418|ref|ZP_05945991.1| ribonuclease E [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260936809|gb|EEX92798.1| ribonuclease E [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 983
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 210/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++ I PD RV+ YD +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHISLIRPDFVSRVKKYDGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ +V DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDRARVQIGRISRFGLLEMS 384
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 385 RQRL---------SPS-----LAEASHHICPRCT 404
>gi|154486651|ref|ZP_02028058.1| hypothetical protein BIFADO_00470 [Bifidobacterium adolescentis
L2-32]
gi|154084514|gb|EDN83559.1| ribonuclease, Rne/Rng family [Bifidobacterium adolescentis L2-32]
Length = 464
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 191/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER RLK
Sbjct: 67 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERARLK 126
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I AK DE + G
Sbjct: 127 NIVSKIAPKDMGVIIRTAAEGASEEAITKDLENLVRQWERIT--AKR-----DEFLHGKR 179
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-- 466
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 180 PKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYERIEEYLDTMAPDLKDKLEKWDPAEH 239
Query: 467 --IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 240 DGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 298
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL AA++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 299 VTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 358
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 359 VTSLGLVQMTRKR 371
>gi|433658163|ref|YP_007275542.1| Ribonuclease E [Vibrio parahaemolyticus BB22OP]
gi|432508851|gb|AGB10368.1| Ribonuclease E [Vibrio parahaemolyticus BB22OP]
Length = 1023
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFINRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|319943486|ref|ZP_08017768.1| ribonuclease E [Lautropia mirabilis ATCC 51599]
gi|319743301|gb|EFV95706.1| ribonuclease E [Lautropia mirabilis ATCC 51599]
Length = 1068
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 153/465 (32%), Positives = 233/465 (50%), Gaps = 74/465 (15%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ ++ EP EA F ++ E H GF P S+S D P +D
Sbjct: 40 NIYKGVVTRVEPSLEACFVNYGEDRH-------GFLPFKEISRSYFRQDVEGGKPLRIQD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G ++IVQV KE G KG LT L R+ +L+ + R G VSR
Sbjct: 93 V-----------ISEGQELIVQVEKEERGNKGAALTTMISLAGRYVVLMPNNPRGGGVSR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G +R L+ LQ P G L RT G S+EELQ DL LL W+ I AKSA
Sbjct: 142 RIEGEDRQELREAMDKLQVPSGMSLIARTAGIGRSVEELQWDLNYLLQLWQAIESAAKSA 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
A L+++ + ++DYF + ++++D+ Y + T ++ + PD
Sbjct: 202 PGA----------FLIYQESSLVIRAIRDYFTADIGEVLIDTEDIYQQATQFMSYVMPDY 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+ Y PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN
Sbjct: 252 VARVKYYRDATPLFSRFQIEHQIETAYSRVVPLPSGGAIVIDHTEALVAIDVNSARAT-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
GS E+ N+ AA+++AR++RLRD+GG+IV+DFIDM N+R V + +K+A+ D
Sbjct: 310 RGSDIEETAFRTNMEAAEEVARQMRLRDLGGLIVIDFIDMESSRNQREVEQCLKEALSLD 369
Query: 577 RSMVKVSELSRHGLMEITRKR---------------------------------AMMEQK 603
R+ V+ ++SR GLME++R+R +++++
Sbjct: 370 RARVQTGKISRFGLMELSRQRLRPALNEGTHITCPRCNGTGVIRDIESSALHVLRVLQEE 429
Query: 604 ADPENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILL 648
A EN + ++V + YL + KRT +A L + LK I+L
Sbjct: 430 AMKENTAA---VHVQVPVEVATYLLNEKRTEIATLEARLKVEIVL 471
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ ++L+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATHSEELRVAIVDGQRLIDIDIESAGRESRKSNIYKGVVTRVEPSLEACFVNYGED 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|350553781|ref|ZP_08922941.1| ribonuclease, Rne/Rng family [Thiorhodospira sibirica ATCC 700588]
gi|349789886|gb|EGZ43818.1| ribonuclease, Rne/Rng family [Thiorhodospira sibirica ATCC 700588]
Length = 679
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 213/377 (56%), Gaps = 31/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E +GF P K E+ P+ + +H
Sbjct: 40 NIYKGIITRVEPSLEAAFINY-------GSERHGFLPLK-EI-------SPEYLGEDEHG 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G +V+VQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 NLGRAKSVIKEGMEVLVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER+ ++ I LQ P G G+ RT G + EEL DLE L + W++I++ A
Sbjct: 145 EERSEIREILSQLQVPAGMGVIARTAGVGRTFEELSWDLEYLKTLWESIVQ--------A 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+G + P L+++ + ++D+ + ++VVD P Y + ++Q + P ++
Sbjct: 197 SQGRKA--PFLVYQESNVIIRALRDHLRNDIGEIVVDDPAVYAQAQKFMQQVMPKTLRKL 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY+ +PLF+++ IE +I + + LP+GGS+V + TEAL+SIDVN GS
Sbjct: 255 KLYEDHVPLFNRYQIESQIEAAFERVISLPSGGSVVFDHTEALISIDVNSARAT--RGSD 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA +IAR+LRLRD+GG+I++DFIDM+ N+R V ++ A+E DR+ V
Sbjct: 313 IEETALTTNLEAADEIARQLRLRDLGGLIIIDFIDMSATRNQREVESRLRAALEMDRARV 372
Query: 581 KVSELSRHGLMEITRKR 597
+V +SR GL+E++R+R
Sbjct: 373 QVGRISRFGLLEMSRQR 389
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 42/68 (61%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
ILIN++ R+A+++ +KL ++ +E + ++Y G++T++ P++ AF+N G+
Sbjct: 4 ILINATQPEELRVAMVDGQKLYDIDIETPSREQKKANIYKGIITRVEPSLEAAFINYGSE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|326779383|ref|ZP_08238648.1| ribonuclease, Rne/Rng family [Streptomyces griseus XylebKG-1]
gi|326659716|gb|EGE44562.1| ribonuclease, Rne/Rng family [Streptomyces griseus XylebKG-1]
Length = 964
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 190/308 (61%), Gaps = 10/308 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 288 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 347
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 348 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIRKKAK--------GTSGSNAP 399
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 400 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAPDLTERLSRWTSEVDV 459
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + N
Sbjct: 460 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNN 518
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 519 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 578
Query: 590 LMEITRKR 597
L+++TRKR
Sbjct: 579 LVQMTRKR 586
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 191 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 249
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 250 MEAAFVDIGKGRNAVL 265
>gi|256822393|ref|YP_003146356.1| Rne/Rng family ribonuclease [Kangiella koreensis DSM 16069]
gi|256795932|gb|ACV26588.1| ribonuclease, Rne/Rng family [Kangiella koreensis DSM 16069]
Length = 951
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 200/363 (55%), Gaps = 29/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K EV + + P S+ P K L+ +G +
Sbjct: 55 EAAFVDY-------GAERHGFLPLK-EVAREYMQNAP-----SRGRPTIKEALK--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
+IVQ+ KE G KG LT L + +L+ + R G +SR+I G ERT LK + L
Sbjct: 100 IIVQIDKEERGNKGAALTTSISLAGSYLVLMPNNPRAGGISRRIEGDERTELKQVMSQLP 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P G G +RT G SLEE+Q D L+ TW I + A G A P L+ +
Sbjct: 160 VPNGMGCIVRTAGIGKSLEEIQYDFNYLIDTWNGIKQVA---------GTRPA-PFLITQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
++DY + ++++D P Y V S LQ PD +V+LY IPLF+++
Sbjct: 210 ESDVITRAIRDYLRPDIGEIIIDRPEIYERVKSELQYQRPDFVSKVKLYRDEIPLFNRYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
+E +I + + V LP+GGS+V +QTEAL+SID+N G E+ L N+ AA+
Sbjct: 270 VESQIESAFQREVRLPSGGSVVFDQTEALLSIDINSARAT--KGGDIEETALHTNVEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V +K +V RDR+ +++ +SR GL+E++
Sbjct: 328 EIARQLRLRDIGGLIVIDFIDMGPPRNQREVERVLKDSVARDRARIQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|406596528|ref|YP_006747658.1| RNase E [Alteromonas macleodii ATCC 27126]
gi|406373849|gb|AFS37104.1| RNase E [Alteromonas macleodii ATCC 27126]
Length = 1132
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 205/363 (56%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T P+G K + P K +++G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIARTYFPKGYK-FEGRPNIKDV--IKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK ++K
Sbjct: 100 VIVQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLD 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEG GL +RT G S EEL+ DL+ LL+ W+ I A+ E P L+H+
Sbjct: 160 LPEGMGLIVRTAGVGKSYEELEWDLKVLLTHWEAISSVAE----------EREAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++D Y + ++Q + PD +RV+LY +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFANRVKLYRGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|182438733|ref|YP_001826452.1| hypothetical protein SGR_4940 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467249|dbj|BAG21769.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350]
Length = 1415
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 190/308 (61%), Gaps = 10/308 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 739 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 798
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 799 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIRKKAK--------GTSGSNAP 850
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 851 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAPDLTERLSRWTSEVDV 910
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + N
Sbjct: 911 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNN 969
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 970 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 1029
Query: 590 LMEITRKR 597
L+++TRKR
Sbjct: 1030 LVQMTRKR 1037
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 642 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 700
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 701 MEAAFVDIGKGRNAVL 716
>gi|332288915|ref|YP_004419767.1| ribonuclease E [Gallibacterium anatis UMN179]
gi|330431811|gb|AEC16870.1| ribonuclease E [Gallibacterium anatis UMN179]
Length = 996
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+Q+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 LQEGQEVIVQVSKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L+ P+G GL +RT G S EELQ DL LL W+ I + ++S
Sbjct: 154 ALSSLEVPDGVGLIVRTAGVGRSPEELQWDLHVLLHHWEAIKQASESRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + + +V +++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSRKVFDKVKEHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHFQIESQIESAFQREVQLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPARHQREVENRMREAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|417843043|ref|ZP_12489120.1| Ribonuclease E [Haemophilus haemolyticus M21127]
gi|341950277|gb|EGT76866.1| Ribonuclease E [Haemophilus haemolyticus M21127]
Length = 937
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + +++
Sbjct: 142 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|407683488|ref|YP_006798662.1| RNase E [Alteromonas macleodii str. 'English Channel 673']
gi|407245099|gb|AFT74285.1| RNase E [Alteromonas macleodii str. 'English Channel 673']
Length = 1136
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 205/363 (56%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T P+G K + P K +++G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIARTYFPKGYK-FEGRPNIKDV--IKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK ++K
Sbjct: 100 VIVQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLD 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEG GL +RT G S EEL+ DL+ LL+ W+ I A+ E P L+H+
Sbjct: 160 LPEGMGLIVRTAGVGKSYEELEWDLKVLLTHWEAISSVAE----------EREAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++D Y + ++Q + PD +RV+LY +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFANRVKLYRGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|343507588|ref|ZP_08744985.1| ribonuclease E [Vibrio ichthyoenteri ATCC 700023]
gi|342797646|gb|EGU33289.1| ribonuclease E [Vibrio ichthyoenteri ATCC 700023]
Length = 1042
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 209/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + PQG + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPQGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTMYDRALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|417840756|ref|ZP_12486864.1| Ribonuclease E [Haemophilus haemolyticus M19501]
gi|341950567|gb|EGT77154.1| Ribonuclease E [Haemophilus haemolyticus M19501]
Length = 938
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + +++
Sbjct: 142 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|339482763|ref|YP_004694549.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. Is79A3]
gi|338804908|gb|AEJ01150.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. Is79A3]
Length = 847
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 219/393 (55%), Gaps = 40/393 (10%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K N+ ++I EP EA F D+ E +GF P K P S
Sbjct: 26 DLDIESISKEQRKSNIYKAVITRIEPSLEAAFVDY-------GCERHGFLPFKEIAP--S 76
Query: 269 HTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWIL 326
+ G+ + + +Q +Q+G ++IVQV K+ G KG LT Y L R+ +L
Sbjct: 77 CFNESAGSSNGR--------IQDLLQEGQELIVQVDKDERGNKGAALTTYISLAGRYLVL 128
Query: 327 I-TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLS 384
I + + GVSR+ITG ER L+ VIAK P + RT G S EELQ DL L
Sbjct: 129 IPNNPNSGGVSRRITGEERNDLRDVIAKLEVPPSMSIIARTAGIGRSTEELQWDLNYLTQ 188
Query: 385 TWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHE 444
W I E A + GV L+++ + ++DYF++++ ++++DS Y +
Sbjct: 189 LWYAIEEAANN-----QNGV-----FLIYQESSLVIRAIRDYFSQEIGEILIDSRDIYEQ 238
Query: 445 VTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALV 504
+ ++ + P DR++ Y +PLF +F IE +I S++V LP+GG++VI+ TEALV
Sbjct: 239 ASQFMVHVMPANVDRLKFYHDDVPLFSRFQIEHQIETAYSRKVSLPSGGAIVIDHTEALV 298
Query: 505 SIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRL 564
S+DVN + G E L+ NL AA +IAR+LRLRD+GG+IV+DFIDM N+R
Sbjct: 299 SVDVNSARAI--RGLDIEHTALNTNLEAADEIARQLRLRDLGGLIVIDFIDMDVQRNQRE 356
Query: 565 VYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
V + +A+ +DR+ ++V ++SR GL+E++R+R
Sbjct: 357 VEARLHEALRQDRARIQVGKISRFGLLELSRQR 389
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A++ + LV+L +E + + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQPEELRVAIVNGQTLVDLDIESISKEQRKSNIYKAVITRIEPSLEAAFVDYGCE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|342904003|ref|ZP_08725805.1| Ribonuclease E [Haemophilus haemolyticus M21621]
gi|341954012|gb|EGT80506.1| Ribonuclease E [Haemophilus haemolyticus M21621]
Length = 937
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + +++
Sbjct: 142 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|384190588|ref|YP_005576336.1| Ribonuclease G [Bifidobacterium animalis subsp. lactis BB-12]
gi|384191729|ref|YP_005577476.1| Ribonuclease E [Bifidobacterium animalis subsp. lactis CNCM I-2494]
gi|289178080|gb|ADC85326.1| Ribonuclease G [Bifidobacterium animalis subsp. lactis BB-12]
gi|340364466|gb|AEK29757.1| Ribonuclease E [Bifidobacterium animalis subsp. lactis CNCM I-2494]
Length = 1127
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 189/313 (60%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER RLK
Sbjct: 663 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERNRLK 722
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLEGL + W I +E + G
Sbjct: 723 SIVSKIAPKDMGVIIRTAAEGASEEAIAKDLEGLTNQWAEIQR-------KREEFLHGKR 775
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-- 466
P LL + +V+D FN+ KM+V+ YH + YL +APDL +++E +D
Sbjct: 776 PKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLDHMAPDLHNKLERWDPEEH 835
Query: 467 --IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+FD++ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 836 GGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 894
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 895 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 954
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 955 VTSLGLVQMTRKR 967
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 589 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 642
>gi|254785799|ref|YP_003073228.1| ribonuclease E [Teredinibacter turnerae T7901]
gi|237684129|gb|ACR11393.1| ribonuclease E [Teredinibacter turnerae T7901]
Length = 1070
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 183/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R+ LK
Sbjct: 95 VKEGMEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIDGDDRSELKD 154
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+++ P G G+ +RT G S EELQ D+ L + W NI E A +
Sbjct: 155 ALSQIEIPNGMGIIVRTAGVGRSAEELQWDMNYLTTLWNNIQEAAN----------QSTA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L + + ++DY + +++VD Y++ ++Q + P+ +V+LY+K +P
Sbjct: 205 PAFLFQESNVIIRAIRDYLRPDIGEVIVDDIAAYNQAADFVQMVMPNYRSKVKLYEKSVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+ + IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 265 LFNHYQIEGQIETAFEREVKLPSGGSIVIDVTEALVSIDINSSRAT--KGGDIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM N+R V V+ A++ DR+ V+V +SR
Sbjct: 323 NLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQRAVENRVRDALKMDRARVQVGRISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
>gi|407802525|ref|ZP_11149366.1| phosphoric diester hydrolase [Alcanivorax sp. W11-5]
gi|407023680|gb|EKE35426.1| phosphoric diester hydrolase [Alcanivorax sp. W11-5]
Length = 971
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/364 (37%), Positives = 196/364 (53%), Gaps = 29/364 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQV-QKGT 295
EA F DF E +GF P K S +KD K G V ++G
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-------EISRQYFSKDPKDIQGRINIKDVIREGQ 99
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG L+ + L R+ +L+ + R G +SR+I G ER LK L
Sbjct: 100 EVIVQVDKEERGNKGAALSTFISLAGRYLVLMPNNPRAGGISRRIEGDERQELKEAMNAL 159
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P G+ +RT G S EELQ DL LL W +I A E P L++
Sbjct: 160 TIPNDMGVIVRTAGLGRSAEELQWDLNYLLKLWDSISTAAN----------ERPAPFLVY 209
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++DS T+ E ++ + D +++LY PLF ++
Sbjct: 210 QESNVIIRAIRDYLRKDIGEVLIDSEETFAEANGFVSQVMSDFSHKIKLYRDETPLFSRY 269
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L NL AA
Sbjct: 270 QIESQIETAFRREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALQTNLEAA 327
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
+IAR+LRLRDIGG+IVVDFIDM N+R V +++A+E DR+ V+V +SR GLME+
Sbjct: 328 DEIARQLRLRDIGGLIVVDFIDMGPARNQRDVENRMREALEADRARVQVGRISRFGLMEL 387
Query: 594 TRKR 597
+R+R
Sbjct: 388 SRQR 391
>gi|365862139|ref|ZP_09401896.1| ribonuclease E [Streptomyces sp. W007]
gi|364008621|gb|EHM29604.1| ribonuclease E [Streptomyces sp. W007]
Length = 1142
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 190/308 (61%), Gaps = 10/308 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 461 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 520
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 521 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEDIQKKAK--------GTSGSNAP 572
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 573 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAPDLTERLSRWTSEVDV 632
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + N
Sbjct: 633 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNN 691
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 692 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 751
Query: 590 LMEITRKR 597
L+++TRKR
Sbjct: 752 LVQMTRKR 759
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 364 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 422
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 423 MEAAFVDIGKGRNAVL 438
>gi|313202748|ref|YP_004041405.1| ribonuclease, rne/rng family [Paludibacter propionicigenes WB4]
gi|312442064|gb|ADQ78420.1| ribonuclease, Rne/Rng family [Paludibacter propionicigenes WB4]
Length = 524
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 224/394 (56%), Gaps = 40/394 (10%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N + +D G D + FL H+LD SN F + ++ Q D
Sbjct: 46 VKKIMPGLNAAFVDVG---YDKDAFL---HYLDLGSN--FNTLTQFT-------TQALSD 90
Query: 279 SKHTPG-EKTWLQ------------VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWI 325
K TP +KT LQ ++ G ++VQV KE + TKGP LTA + RF +
Sbjct: 91 RKKTPAIQKTKLQPEIEKNGSINDILKPGQDILVQVTKEPISTKGPRLTAEISIAGRFLV 150
Query: 326 LITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLS 384
LI D++ VS+KI T ER RLK + ++++P+GFG+ +RTVA + EL +L+ L+
Sbjct: 151 LIPFADKVSVSQKIKTEEERQRLKQLIQSIKPKGFGVIVRTVAEEKKVAELDNELKILVK 210
Query: 385 TWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHE 444
W+ A+ + +G IL +G+T+ I++D F+ K + ++ + E
Sbjct: 211 RWEE--------AVIKTQQTKGVSLIL--EELGRTVGIIRDLFSPSFKHIHINDQAVFAE 260
Query: 445 VTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALV 504
V Y+ IAPD D V+LY +P++D F I ++I + K V NG L+IE TEAL
Sbjct: 261 VRDYVNLIAPDRKDIVKLYQDELPIYDSFGITKQIKSAFGKTVSFKNGAYLIIEHTEALH 320
Query: 505 SIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRL 564
+DVN G+ G+ +E LDVNLAAA +IAR+LRLRD+GGIIVVDFIDM + N++
Sbjct: 321 VVDVNSGNRS-KAGNGQEDNALDVNLAAADEIARQLRLRDMGGIIVVDFIDMHETENRQK 379
Query: 565 VYEEVKKAVERDRSMVKVSELSRHGLMEITRKRA 598
+++ +++ + DR+ + LS+ GL+++TR+R
Sbjct: 380 LFDRMRENMANDRAKHNILPLSKFGLLQMTRQRV 413
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVEL E + ++YLG V K++P + AFV++G + + + HY
Sbjct: 16 IALLEDKRLVELNQEGREEQFAVGNIYLGRVKKIMPGLNAAFVDVGYDKDAFL---HY 70
>gi|189463295|ref|ZP_03012080.1| hypothetical protein BACCOP_04012 [Bacteroides coprocola DSM 17136]
gi|189430025|gb|EDU99009.1| S1 RNA binding domain protein [Bacteroides coprocola DSM 17136]
Length = 524
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 198/325 (60%), Gaps = 13/325 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W++ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEDTISKVQKAT---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ Y+EV Y+ IAP+ V+LY ++P+
Sbjct: 227 SLVYEETSRTVAMLRDLFNPSYENIYVNDESVYNEVKDYVTLIAPERSGIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K V +G L+IE TEAL +DVN G+ G+ +E LDVN
Sbjct: 287 FDNFAITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRS-KSGNGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRA--MMEQKADPENPKSW 612
LM+ITR+R M+ D + P +
Sbjct: 406 LMQITRQRVRPAMDVNTDEDCPTCF 430
>gi|417845384|ref|ZP_12491413.1| Ribonuclease E [Haemophilus haemolyticus M21639]
gi|341955220|gb|EGT81681.1| Ribonuclease E [Haemophilus haemolyticus M21639]
Length = 808
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 204/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LS 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L PEG GL +RT G S EELQ DL+ LL W+ I + +++ P
Sbjct: 156 SSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|375130395|ref|YP_004992495.1| ribonuclease E [Vibrio furnissii NCTC 11218]
gi|315179569|gb|ADT86483.1| ribonuclease E [Vibrio furnissii NCTC 11218]
Length = 1044
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 210/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-SYQGRPSIKEVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 385 RQRL---------SPS-----LAEASHHICPRCT 404
>gi|224026369|ref|ZP_03644735.1| hypothetical protein BACCOPRO_03125 [Bacteroides coprophilus DSM
18228]
gi|224019605|gb|EEF77603.1| hypothetical protein BACCOPRO_03125 [Bacteroides coprophilus DSM
18228]
Length = 524
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 198/325 (60%), Gaps = 13/325 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSNEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAT---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ Y+EV Y+ IAP+ + V+LY ++P+
Sbjct: 227 SLVYEETSRTVAMLRDLFNPSYENIYVNDEAVYNEVKDYVALIAPERVNIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ G+ +E LDVN
Sbjct: 287 FDNFAITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSGNGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRA--MMEQKADPENPKSW 612
LM+ITR+R M+ D + P +
Sbjct: 406 LMQITRQRVRPAMDVNTDEDCPTCF 430
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++Y+G V K++P + FV++G + + + HY
Sbjct: 16 IALLEDKNLVELQKEERNLSFSVGNMYVGKVKKIMPGLNACFVDVGFEKDAFL---HY 70
>gi|119469427|ref|ZP_01612366.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Alteromonadales bacterium TW-7]
gi|119447291|gb|EAW28560.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Alteromonadales bacterium TW-7]
Length = 564
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 202/365 (55%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ D H GF P K + + T P G +T + ++ +++G
Sbjct: 54 EAAFVDY-GADRH------GFLPLK----EIARTYFPAG-----YTFNGRPNIRDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VI+QV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 98 QEVIIQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSR 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIRQAADSAK----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D PR + E ++++ PD RV+LY PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|183601868|ref|ZP_02963237.1| ribonuclease G [Bifidobacterium animalis subsp. lactis HN019]
gi|219682782|ref|YP_002469165.1| ribonuclease G [Bifidobacterium animalis subsp. lactis AD011]
gi|241190358|ref|YP_002967752.1| ribonuclease G [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241195764|ref|YP_002969319.1| ribonuclease G [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|384193358|ref|YP_005579104.1| ribonuclease E/G family protein [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384194914|ref|YP_005580659.1| ribonuclease G [Bifidobacterium animalis subsp. lactis V9]
gi|387820222|ref|YP_006300265.1| ribonuclease G [Bifidobacterium animalis subsp. lactis B420]
gi|387821884|ref|YP_006301833.1| ribonuclease G [Bifidobacterium animalis subsp. lactis Bi-07]
gi|423678880|ref|ZP_17653756.1| ribonuclease G [Bifidobacterium animalis subsp. lactis BS 01]
gi|183218753|gb|EDT89395.1| ribonuclease G [Bifidobacterium animalis subsp. lactis HN019]
gi|219620432|gb|ACL28589.1| ribonuclease G [Bifidobacterium animalis subsp. lactis AD011]
gi|240248750|gb|ACS45690.1| ribonuclease G [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240250318|gb|ACS47257.1| ribonuclease G [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|295793345|gb|ADG32880.1| ribonuclease G [Bifidobacterium animalis subsp. lactis V9]
gi|345282217|gb|AEN76071.1| ribonuclease E/G family protein [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366042069|gb|EHN18550.1| ribonuclease G [Bifidobacterium animalis subsp. lactis BS 01]
gi|386652923|gb|AFJ16053.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Bifidobacterium animalis subsp. lactis B420]
gi|386654492|gb|AFJ17621.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Bifidobacterium animalis subsp. lactis Bi-07]
Length = 1028
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 189/313 (60%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER RLK
Sbjct: 564 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERNRLK 623
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLEGL + W I +E + G
Sbjct: 624 SIVSKIAPKDMGVIIRTAAEGASEEAIAKDLEGLTNQWAEIQRK-------REEFLHGKR 676
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-- 466
P LL + +V+D FN+ KM+V+ YH + YL +APDL +++E +D
Sbjct: 677 PKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLDHMAPDLHNKLERWDPEEH 736
Query: 467 --IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+FD++ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 737 GGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 795
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 796 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 855
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 856 VTSLGLVQMTRKR 868
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 490 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 543
>gi|90413247|ref|ZP_01221242.1| Putative ribonuclease E [Photobacterium profundum 3TCK]
gi|90325799|gb|EAS42257.1| Putative ribonuclease E [Photobacterium profundum 3TCK]
Length = 1099
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 210/396 (53%), Gaps = 46/396 (11%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K EV D ++ QG + K +++G
Sbjct: 54 EAAFVDY-------GSERHGFLPLK-EVARDYFPANYTYQGRPNIKEV--------LKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK T
Sbjct: 98 QEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALST 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL+ DL LL+ W + E A S P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAVKEAADS----------NPAPFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++DSP+ + +++ I PD RV+ Y+ +PLF
Sbjct: 208 HQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLIRPDFLSRVKRYEGEVPLFSH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETAFQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 326 ADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 385
Query: 593 ITRKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
++R+R +P + HH+C T
Sbjct: 386 MSRQRL---------SPS-----LAEASHHVCPRCT 407
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 64 RHGFLPLKEVARDY-FP 79
>gi|120599253|ref|YP_963827.1| ribonuclease [Shewanella sp. W3-18-1]
gi|146292673|ref|YP_001183097.1| ribonuclease [Shewanella putrefaciens CN-32]
gi|120559346|gb|ABM25273.1| RNAse E [Shewanella sp. W3-18-1]
gi|145564363|gb|ABP75298.1| RNAse E [Shewanella putrefaciens CN-32]
Length = 1128
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A++ +GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEAAQT---------KGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHISLVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 400 GLMEMSRQR 408
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|418465794|ref|ZP_13036726.1| ribonuclease E [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755292|gb|EHK89456.1| ribonuclease E [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 964
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 187/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|417840050|ref|ZP_12486206.1| Ribonuclease E [Haemophilus haemolyticus M19107]
gi|341950517|gb|EGT77105.1| Ribonuclease E [Haemophilus haemolyticus M19107]
Length = 937
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + +++
Sbjct: 142 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|343517297|ref|ZP_08754303.1| ribonuclease E [Vibrio sp. N418]
gi|342793621|gb|EGU29411.1| ribonuclease E [Vibrio sp. N418]
Length = 1044
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 209/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + PQG + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPQGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTMYDRALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|297569133|ref|YP_003690477.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2]
gi|296925048|gb|ADH85858.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2]
Length = 511
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/440 (33%), Positives = 234/440 (53%), Gaps = 41/440 (9%)
Query: 267 DSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWIL 326
D+ H +H PG+ + +G ++VQV KE LG+KG LT + L R +
Sbjct: 96 DTCCGHDTDPLCRRH-PGQNIEDLLSEGQDIMVQVCKEPLGSKGARLTCHITLPCRNLVF 154
Query: 327 ITSCDRIGVSRKITGVE-RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLST 385
+ + IG+SRKI + R L+ + L+P G G +RTVA + E+L+ D+E LL T
Sbjct: 155 MPRTEHIGISRKIEDEDVRQMLRQDIEALRPAGAGFIVRTVAETATNEDLEADMEFLLHT 214
Query: 386 WKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEV 445
W+ I A +A VP L+++ + TL +V+D F+ +V ++VVD P TY V
Sbjct: 215 WEEIQARATTAP----------VPGLIYQDLDITLRVVRDVFSPEVDQVVVDEPETYQRV 264
Query: 446 TSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVS 505
+++ P L RVEL + P+FD + +E E+N L +++ L GG ++IE TEAL
Sbjct: 265 LQFVETFVPHLKGRVELAPEDPPIFDAYGVELEVNRALERKIWLRCGGYIIIEPTEALTV 324
Query: 506 IDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLV 565
IDVN G + +G E+ I N+ AAK+IA +LRLR+IGGII+VDFIDM D+ ++ V
Sbjct: 325 IDVNTGRYVGKNGL--EETIFKTNMEAAKEIAYQLRLRNIGGIIIVDFIDMEDEEHREAV 382
Query: 566 YEEVKKAVERDRSMVKVSELSRHGLMEITRKRAMMEQKADPENPKSWPRFILRVDHHMCN 625
+ +K+A ++D+S + + +S GL+++TRKR + D ++H MC
Sbjct: 383 FNALKEAAKKDKSRLNILRVSEFGLVQMTRKR----NRED-------------LEHLMCE 425
Query: 626 YLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTDDKASENQHQVAISLLR--- 682
+ T + S SL + ++ R R E + +VA LLR
Sbjct: 426 PCNCCQGTGVIRSSRSLCYDVFRQIEREACRRQAETV------VVRVHPRVAELLLREEA 479
Query: 683 -SAEARANKSGKKVTLVPIK 701
+ + K GK++ ++PIK
Sbjct: 480 HTVDYLEKKCGKRIQIMPIK 499
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST +LIN++ + RIA+LE L E LE +VY G V +++P M AFV+
Sbjct: 1 MSTQLLINATPYEI-RIALLEHGNLAEFYLEHPAEKGLVGNVYRGRVVRVLPGMQAAFVD 59
Query: 134 IGNSRPSLMDI 144
+G R + +
Sbjct: 60 VGLERTGFLYV 70
>gi|343501912|ref|ZP_08739779.1| ribonuclease E [Vibrio tubiashii ATCC 19109]
gi|418480459|ref|ZP_13049517.1| ribonuclease E [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342816341|gb|EGU51240.1| ribonuclease E [Vibrio tubiashii ATCC 19109]
gi|384571851|gb|EIF02379.1| ribonuclease E [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 983
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALDHIRLVRPDFVSRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ +V DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|343510953|ref|ZP_08748144.1| ribonuclease E [Vibrio scophthalmi LMG 19158]
gi|342799899|gb|EGU35449.1| ribonuclease E [Vibrio scophthalmi LMG 19158]
Length = 1040
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 209/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + PQG + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPQGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTMYDRALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|332141129|ref|YP_004426867.1| RNase E [Alteromonas macleodii str. 'Deep ecotype']
gi|410861441|ref|YP_006976675.1| RNase E [Alteromonas macleodii AltDE1]
gi|327551151|gb|AEA97869.1| RNase E [Alteromonas macleodii str. 'Deep ecotype']
gi|410818703|gb|AFV85320.1| RNase E [Alteromonas macleodii AltDE1]
Length = 1134
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 205/363 (56%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T P+G K + P K +++G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIARTYFPKGYK-FEGRPNIKDV--IKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK ++K
Sbjct: 100 VIIQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLD 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL+ LL W+ I E A EG E P L+H+
Sbjct: 160 LPDGMGLIVRTAGVGKSYEELEWDLKVLLKHWEAISEVA--------EGRE--APFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++D Y + ++Q + PD RV+LY +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFASRVKLYRGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|357399239|ref|YP_004911164.1| hypothetical protein SCAT_1637 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337765648|emb|CCB74357.1| conserved protein of unknown function [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 1243
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 188/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 646 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 705
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL +D+ L + W+ I ++AK+ G P
Sbjct: 706 LKKIVPENAGVIVRTAAEGASEEELSRDVSRLQAQWEEIQKNAKN----------GNAPS 755
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+++ + + Y+ +APDL DR++ + + +F
Sbjct: 756 LLYGEPDMTVRVVRDIFNEDFSKVIISGDDAWETIHGYVSHVAPDLTDRLQKWTSEVDVF 815
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 816 ATYRIDEQLLKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 874
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 875 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 934
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 935 IQMTRKR 941
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 570 QIGVLEDGVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 623
>gi|296118763|ref|ZP_06837339.1| putative ribonuclease [Corynebacterium ammoniagenes DSM 20306]
gi|295968252|gb|EFG81501.1| putative ribonuclease [Corynebacterium ammoniagenes DSM 20306]
Length = 1374
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 194/331 (58%), Gaps = 23/331 (6%)
Query: 284 GEKTWLQ-------------VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSC 330
GE W Q ++ G +V+VQV K+ +G KGP LT L RF + +
Sbjct: 585 GEVNWRQAGLGGRARKIEQAMKSGDQVLVQVAKDPVGHKGPRLTTQVSLPGRFLVYVPGG 644
Query: 331 DRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIM 390
G+SRK+ ER RL+ I + + PE G IRT A + E + D+ L TW I
Sbjct: 645 RNAGISRKLPAPERKRLREILEKVVPEQGGAIIRTAAENVAEEAIAADVNRLHDTWNEIK 704
Query: 391 EHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQ 450
E A+ ++ +G P+ L+ + +V+D FNE ++VVD R Y V+SY+
Sbjct: 705 EAAEK-----EKASKGTEPVALYEEPQMLVKVVRDLFNEDFDRLVVDGKRPYEVVSSYVN 759
Query: 451 DIAPDLCDRVELYDKR----IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+AP+L DRV Y++ I F+ + I+E+++ LS++V LP+GG+LVI++TEA+ +
Sbjct: 760 RLAPELADRVSRYNRADNGGIDAFETYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVV 819
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G G + E+ + NL AA++I R++RLRD+GG+IVVDFIDM N+ LV
Sbjct: 820 DVNTGK-FTGTGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVL 878
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+K+A+ RDR+ +VSE++ GL+++TRKR
Sbjct: 879 RRLKEALGRDRTRHQVSEVTSLGLVQMTRKR 909
>gi|114047967|ref|YP_738517.1| RNAse E [Shewanella sp. MR-7]
gi|113889409|gb|ABI43460.1| RNAse E [Shewanella sp. MR-7]
Length = 1095
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 179/309 (57%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A+S
Sbjct: 154 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEAAQS----------RNA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y E ++ + PD +RV+LY+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHIALVRPDFVERVKLYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|386313352|ref|YP_006009517.1| ribonuclease, Rne/Rng family [Shewanella putrefaciens 200]
gi|319425977|gb|ADV54051.1| ribonuclease, Rne/Rng family [Shewanella putrefaciens 200]
Length = 1126
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A++ +GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEAAQT---------KGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHISLVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 400 GLMEMSRQR 408
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|425065857|ref|ZP_18468977.1| Ribonuclease [Pasteurella multocida subsp. gallicida P1059]
gi|404383352|gb|EJZ79806.1| Ribonuclease [Pasteurella multocida subsp. gallicida P1059]
Length = 1004
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|333908044|ref|YP_004481630.1| ribonuclease, Rne/Rng family [Marinomonas posidonica IVIA-Po-181]
gi|333478050|gb|AEF54711.1| ribonuclease, Rne/Rng family [Marinomonas posidonica IVIA-Po-181]
Length = 1087
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 183/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R++LK
Sbjct: 116 ISEGQEVIVQVDKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGISRRIDGDDRSQLKE 175
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ PE GL +RT G S EELQ DL+ L + W +I + A E
Sbjct: 176 AMSGLKTPENGGLIVRTAGVGRSTEELQWDLDYLETLWSSITKAA----------AEKPA 225
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DY E + ++++D + Y + +++ + P R++LY P
Sbjct: 226 PFLIYQESNIVIRAIRDYLREDIGEVLIDEKQAYQDAVNFVMQVMPHFKSRIKLYTDSTP 285
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF++F IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 286 LFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQT 343
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRDIGG++V+DFIDM N++ V +K A+E DR+ V++ +SR
Sbjct: 344 NLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVENRMKTALEADRARVQLGRISRF 403
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 404 GLLEMSRQR 412
>gi|260767404|ref|ZP_05876342.1| ribonuclease E [Vibrio furnissii CIP 102972]
gi|260617639|gb|EEX42820.1| ribonuclease E [Vibrio furnissii CIP 102972]
Length = 1047
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 210/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-SYQGRPSIKEVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 385 RQRL---------SPS-----LAEASHHICPRCT 404
>gi|404484987|ref|ZP_11020191.1| rne/Rng family ribonuclease [Barnesiella intestinihominis YIT
11860]
gi|404339992|gb|EJZ66423.1| rne/Rng family ribonuclease [Barnesiella intestinihominis YIT
11860]
Length = 524
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 193/306 (63%), Gaps = 12/306 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+ KE + +KGP LTA RF +LI D++ VS+KI + E+ RL+ + +
Sbjct: 119 GQEVLVQIAKEPISSKGPRLTAEISFAGRFLVLIPFSDKVSVSQKIKSNEEKLRLRQLIQ 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P FG+ +RTVA G + EL +L+ L+ W++++ + A L P L+
Sbjct: 179 SIKPRNFGVIVRTVAEGKRVAELNNELKTLVRCWEDMLVKLQKAQL----------PSLV 228
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ G+T+ I++D F+ + + V+ TY+++ +Y+ I+PD D V+LYD +P+FD
Sbjct: 229 YEETGRTVGILRDIFSPSFENIYVNDKETYNQIYNYVSLISPDRKDIVKLYDGELPIFDN 288
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + L K V +G ++IE TEAL IDVN G+ S +E LDVN+ A
Sbjct: 289 FAITKQIKSSLGKTVSFKSGAYVIIEHTEALHVIDVNSGNRS-KASSDQESNALDVNMNA 347
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A++IAR+LRLRD+GGIIV+DFIDM + N++ +Y+ +++ + DR+ + LS+ GLM+
Sbjct: 348 AEEIARQLRLRDMGGIIVIDFIDMDEAENRQKLYDRMRELMANDRARHNILPLSKFGLMQ 407
Query: 593 ITRKRA 598
ITR+R
Sbjct: 408 ITRQRV 413
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LE+ +LVEL E + +YLG V KL+P + AFV++G + + + HY
Sbjct: 16 IALLENNRLVELQKEARNISFSVGDIYLGRVKKLMPGLNAAFVDVGYEKDAFL---HY 70
>gi|374989880|ref|YP_004965375.1| ribonuclease, Rne/Rng family [Streptomyces bingchenggensis BCW-1]
gi|297160532|gb|ADI10244.1| ribonuclease, Rne/Rng family [Streptomyces bingchenggensis BCW-1]
Length = 1410
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 188/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 800 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 859
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL +D++ L + W+ I + AK+ G P
Sbjct: 860 LKKIVPEDAGVIVRTAAEGASEDELSRDVQRLQAQWEEIQKKAKN----------GGAPT 909
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ + + +F
Sbjct: 910 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDGAWDTIHGYVSHVAPDLADRLQRWTSDVDVF 969
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 970 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 1028
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1029 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1088
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1089 VQMTRKR 1095
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + +SN +VYLG V ++P+
Sbjct: 703 FLARREAVERVMVVRQNGERTQ-IGVLEDNVLVEHFVNKEQSNSYVGNVYLGKVQNVLPS 761
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 762 MEAAFVDIGKGRNAVL 777
>gi|403050232|ref|ZP_10904716.1| ribonuclease E [Acinetobacter bereziniae LMG 1003]
Length = 1135
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ Y L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTYISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 MLASLNTPRGMSVIVRTAGIGRSQEELQLDLQHLLDLWAQIQNSANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P+ D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPNQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALST 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|283457946|ref|YP_003362549.1| ribonuclease G and E [Rothia mucilaginosa DY-18]
gi|283133964|dbj|BAI64729.1| ribonuclease G and E [Rothia mucilaginosa DY-18]
Length = 1288
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 182/304 (59%), Gaps = 9/304 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I K
Sbjct: 510 GDSVLVQVTKDPIGHKGARLTSQVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKD 569
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
PEG G+ +RT A G S EEL D+ L + W+ I E AKS + A P +L+
Sbjct: 570 KLPEGAGVIVRTAAEGASEEELTHDINRLRAQWEEIQEKAKSRKVLA--------PEMLY 621
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + V+D FNE M+V + + +Y+ +APDL R++ +D LFD +
Sbjct: 622 QEPDLMIKTVRDVFNEDFTAMIVQGENAWDSIEAYVTYVAPDLVSRLQQWDGDDDLFDHY 681
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 682 RINEQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 740
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 741 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQM 800
Query: 594 TRKR 597
TRKR
Sbjct: 801 TRKR 804
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED L E + + + +VYLG V ++P+M AFV+IG R +++
Sbjct: 431 QIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVL 484
>gi|330829707|ref|YP_004392659.1| ribonuclease E [Aeromonas veronii B565]
gi|328804843|gb|AEB50042.1| Ribonuclease E [Aeromonas veronii B565]
Length = 1027
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 208/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 51 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 94
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 95 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 154
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
PEG GL +RT G S EEL+ DL LL+ W +I + ++ E A P+L+
Sbjct: 155 LTVPEGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQ----------ERAAPVLI 204
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + ++++ + PD +RV+LY + LF+
Sbjct: 205 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVALFNH 264
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 265 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 322
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 323 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 382
Query: 593 ITRKR 597
++R+R
Sbjct: 383 MSRQR 387
>gi|386355287|ref|YP_006053533.1| hypothetical protein SCATT_16400 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365805795|gb|AEW94011.1| hypothetical protein SCATT_16400 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 1222
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 188/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 625 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 684
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL +D+ L + W+ I ++AK+ G P
Sbjct: 685 LKKIVPENAGVIVRTAAEGASEEELSRDVSRLQAQWEEIQKNAKN----------GNAPS 734
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+++ + + Y+ +APDL DR++ + + +F
Sbjct: 735 LLYGEPDMTVRVVRDIFNEDFSKVIISGDDAWETIHGYVSHVAPDLTDRLQKWTSEVDVF 794
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 795 ATYRIDEQLLKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 853
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 854 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 913
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 914 IQMTRKR 920
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 549 QIGVLEDGVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 602
>gi|156975191|ref|YP_001446098.1| ribonuclease E [Vibrio harveyi ATCC BAA-1116]
gi|156526785|gb|ABU71871.1| hypothetical protein VIBHAR_02918 [Vibrio harveyi ATCC BAA-1116]
Length = 1035
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 209/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIKLVRPDFISRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|91227383|ref|ZP_01261772.1| ribonuclease E [Vibrio alginolyticus 12G01]
gi|91188647|gb|EAS74937.1| ribonuclease E [Vibrio alginolyticus 12G01]
Length = 1021
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFLNRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|323495018|ref|ZP_08100107.1| ribonuclease E [Vibrio brasiliensis LMG 20546]
gi|323310675|gb|EGA63850.1| ribonuclease E [Vibrio brasiliensis LMG 20546]
Length = 980
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 211/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + + A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDA----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ +V DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R Q+ P + HH+C T
Sbjct: 388 R------QRLSPS--------LAEASHHICPRCT 407
>gi|445422183|ref|ZP_21436338.1| ribonuclease E/G family protein [Acinetobacter sp. WC-743]
gi|444756853|gb|ELW81391.1| ribonuclease E/G family protein [Acinetobacter sp. WC-743]
Length = 1135
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ Y L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTYISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 MLASLNTPRGMSVIVRTAGIGRSQEELQLDLQHLLDLWAQIQNSANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P+ D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPNQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALST 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|419801261|ref|ZP_14326498.1| ribonuclease E/G family protein [Haemophilus parainfluenzae HK262]
gi|419845451|ref|ZP_14368721.1| ribonuclease E/G family protein [Haemophilus parainfluenzae HK2019]
gi|385193992|gb|EIF41338.1| ribonuclease E/G family protein [Haemophilus parainfluenzae HK262]
gi|386415564|gb|EIJ30090.1| ribonuclease E/G family protein [Haemophilus parainfluenzae HK2019]
Length = 930
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 186/307 (60%), Gaps = 14/307 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 93 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERIELKEAL 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 153 SSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + ++++ + PD +RV+LY +PLF
Sbjct: 203 LIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKAHIKLVRPDFINRVKLYQGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 380
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 381 LEMSRQR 387
>gi|239987588|ref|ZP_04708252.1| hypothetical protein SrosN1_09814, partial [Streptomyces
roseosporus NRRL 11379]
Length = 692
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 190/308 (61%), Gaps = 10/308 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 259 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 318
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 319 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAK--------GTSGSNAP 370
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 371 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRWTSEVDV 430
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + N
Sbjct: 431 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTRNN 489
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 490 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 549
Query: 590 LMEITRKR 597
L+++TRKR
Sbjct: 550 LVQMTRKR 557
Score = 42.4 bits (98), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 183 QIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 236
>gi|406677047|ref|ZP_11084232.1| rne/Rng family ribonuclease [Aeromonas veronii AMC35]
gi|404625361|gb|EKB22178.1| rne/Rng family ribonuclease [Aeromonas veronii AMC35]
Length = 1012
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 208/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
PEG GL +RT G S EEL+ DL LL+ W +I + ++ E A P+L+
Sbjct: 158 LTVPEGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQ----------ERAAPVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + ++++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|423206689|ref|ZP_17193245.1| rne/Rng family ribonuclease [Aeromonas veronii AMC34]
gi|404622241|gb|EKB19106.1| rne/Rng family ribonuclease [Aeromonas veronii AMC34]
Length = 1028
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 208/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
PEG GL +RT G S EEL+ DL LL+ W +I + ++ E A P+L+
Sbjct: 158 LTVPEGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQ----------ERAAPVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + ++++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|421263733|ref|ZP_15714760.1| ribonuclease E [Pasteurella multocida subsp. multocida str. P52VAC]
gi|401689182|gb|EJS84663.1| ribonuclease E [Pasteurella multocida subsp. multocida str. P52VAC]
Length = 1004
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|425063689|ref|ZP_18466814.1| Ribonuclease [Pasteurella multocida subsp. gallicida X73]
gi|404382243|gb|EJZ78704.1| Ribonuclease [Pasteurella multocida subsp. gallicida X73]
Length = 1004
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|423209599|ref|ZP_17196153.1| rne/Rng family ribonuclease [Aeromonas veronii AER397]
gi|404617457|gb|EKB14393.1| rne/Rng family ribonuclease [Aeromonas veronii AER397]
Length = 1030
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 208/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
PEG GL +RT G S EEL+ DL LL+ W +I + ++ E A P+L+
Sbjct: 158 LTVPEGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQ----------ERAAPVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + ++++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|171741361|ref|ZP_02917168.1| hypothetical protein BIFDEN_00442 [Bifidobacterium dentium ATCC
27678]
gi|171276975|gb|EDT44636.1| ribonuclease, Rne/Rng family [Bifidobacterium dentium ATCC 27678]
Length = 482
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 89 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 148
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I + DE + G
Sbjct: 149 GIVSKIAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERI-------SAKRDEFLHGKR 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 202 PKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRIEEYLDTMAPDLKDKLEKWDPAEH 261
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 262 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 320
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 321 VTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 380
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 381 VTSLGLVQMTRKR 393
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 15 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 68
>gi|383309858|ref|YP_005362668.1| ribonuclease E [Pasteurella multocida subsp. multocida str. HN06]
gi|380871130|gb|AFF23497.1| ribonuclease E [Pasteurella multocida subsp. multocida str. HN06]
Length = 1007
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|269967346|ref|ZP_06181407.1| ribonuclease E [Vibrio alginolyticus 40B]
gi|269828054|gb|EEZ82327.1| ribonuclease E [Vibrio alginolyticus 40B]
Length = 1024
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFLNRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|291444550|ref|ZP_06583940.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291347497|gb|EFE74401.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 711
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 190/308 (61%), Gaps = 10/308 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 296 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 355
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 356 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAK--------GTSGSNAP 407
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 408 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRWTSEVDV 467
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + N
Sbjct: 468 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTRNN 526
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 527 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 586
Query: 590 LMEITRKR 597
L+++TRKR
Sbjct: 587 LVQMTRKR 594
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 220 QIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 273
>gi|212557319|gb|ACJ29773.1| Ribonuclease E [Shewanella piezotolerans WP3]
Length = 1119
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 181/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVIIQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G GL +RT G EL+ DL+ L W I E A+SA
Sbjct: 154 ALSELDIPQGMGLIVRTAGVGKDPAELKWDLKVLQHHWAAIKEAAESAP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y + ++ + PD +R++ YD +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVRPDFVERIKRYDAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V + ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|262393761|ref|YP_003285615.1| ribonuclease E [Vibrio sp. Ex25]
gi|262337355|gb|ACY51150.1| ribonuclease E [Vibrio sp. Ex25]
Length = 1024
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFLNRVKKYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|408373318|ref|ZP_11171015.1| phosphoric diester hydrolase [Alcanivorax hongdengensis A-11-3]
gi|407766775|gb|EKF75215.1| phosphoric diester hydrolase [Alcanivorax hongdengensis A-11-3]
Length = 1050
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/364 (36%), Positives = 201/364 (55%), Gaps = 29/364 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQV-QKGT 295
EA F DF E +GF P K S KD K G V ++G
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-------EISRQYFQKDPKDIQGRINIKDVIKEGQ 96
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK L
Sbjct: 97 EVIIQVAKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGISRRIEGEERAQLKEALGAL 156
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+ + +RT G S EELQ DL LL W +I E A++ P L++
Sbjct: 157 TVPDDMSVIVRTAGLGRSAEELQWDLNFLLKQWTSIEEAAQNRK----------APFLIY 206
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++DS + + E +++Q + D +++LY + PLF +F
Sbjct: 207 QESNVIIRAIRDYLRKDIGEVLIDSEKVFAEAQAFVQQVMQDFQHKIKLYSEETPLFSRF 266
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L NL AA
Sbjct: 267 QIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALQTNLEAA 324
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IVVDFIDM N+R V ++ A+E DR+ +++ +SR GL+E+
Sbjct: 325 EEIARQLRLRDIGGLIVVDFIDMGPARNQRDVENRMRDALEADRARIQLGRISRFGLLEL 384
Query: 594 TRKR 597
+R+R
Sbjct: 385 SRQR 388
>gi|56478531|ref|YP_160120.1| ribonuclease E (RNase E) [Aromatoleum aromaticum EbN1]
gi|56314574|emb|CAI09219.1| ribonuclease E (RNase E) [Aromatoleum aromaticum EbN1]
Length = 1007
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 216/391 (55%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ ++I EP EA F D+ GE +GF P K + S
Sbjct: 26 DLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY-------GGERHGFLPFK----EIS 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
T G K + +++G ++IVQV K+ G KG LT Y L R+ +L+
Sbjct: 75 RTYFAPGADAGKV----RIQEALKEGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMP 130
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ERT L+ + L+ P G L RT A G + EELQ DL LL W
Sbjct: 131 NNPRGGGVSRRVEGDERTELRDVMDQLEIPSGMSLIARTAAIGRNAEELQWDLNYLLQLW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ I A+S + A L+++ + ++DYF ++ ++++D+ Y +
Sbjct: 191 RAIDGAAQSQSGA----------FLIYQEGSLVIRAIRDYFQPEIGEILIDTDDVYEQAR 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P +RV+ Y +PLF +F IE +I + S++V LP+GG++VI+ TEALVSI
Sbjct: 241 QFMSHVMPANVNRVKRYSDDVPLFSRFQIEHQIESAYSRQVTLPSGGAVVIDHTEALVSI 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G+ E+ NL AA++IAR+LRLRD+GG+IV+DFIDM N+R V
Sbjct: 301 DVNSGRST--KGADIEETAFRTNLEAAEEIARQLRLRDLGGLIVIDFIDMESQKNQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++ A+ DR+ V+ ++SR GL+E++R+R
Sbjct: 359 GLLRDALRHDRARVQTGKISRFGLLELSRQR 389
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYGGE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K + P
Sbjct: 64 RHGFLPFKEISRTYFAP 80
>gi|423199888|ref|ZP_17186468.1| rne/Rng family ribonuclease [Aeromonas veronii AER39]
gi|404621500|gb|EKB18387.1| rne/Rng family ribonuclease [Aeromonas veronii AER39]
Length = 1009
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 208/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
PEG GL +RT G S EEL+ DL LL+ W +I + ++ E A P+L+
Sbjct: 158 LTVPEGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQ----------ERAAPVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + ++++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|380034887|gb|AFD30839.1| RNaseE [Simiduia agarivorans SA1 = DSM 21679]
Length = 934
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 184/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+
Sbjct: 92 LKEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERAELRD 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G G+ +RT G S EELQ DL+ L+ W N+ + A
Sbjct: 152 AINGLNVPQGMGIIVRTAGIGRSSEELQWDLDWLVQLWGNLSDAASG----------NKA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L + + ++DY + V +++VD+ Y V++++ + P+ +++LY+ IP
Sbjct: 202 PAFLFQESNVIIRAIRDYLRQDVGEVIVDTREAYDLVSTFINQVMPNYHSKIKLYEDDIP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ +E +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 262 LFNRYQVESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGGDIEETALQT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRDIGG+ V+DFIDM + N+R V +++A+E DR+ V+V +S+
Sbjct: 320 NLEAATEIARQLRLRDIGGLAVIDFIDMQNAKNQREVENRIREALEMDRARVQVGRISKF 379
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 380 GLLEMSRQR 388
>gi|213966157|ref|ZP_03394343.1| ribonuclease E [Corynebacterium amycolatum SK46]
gi|213951172|gb|EEB62568.1| ribonuclease E [Corynebacterium amycolatum SK46]
Length = 1236
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 193/311 (62%), Gaps = 10/311 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +++VQV K+ +G KG LT + + RF + + G+SRK+ ER RLK I
Sbjct: 528 LKAGDQILVQVSKDPIGHKGARLTTHISMAGRFLVYVPGGRSAGISRKLPEPERKRLKSI 587
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ PEG G IRT A G S E ++ D++ L S W+ I E +++A + GA PI
Sbjct: 588 LSEVTPEGSGTIIRTAAEGVSKEAIEADIKRLESQWQEIWEASEAA-----KAKRGAKPI 642
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR---- 466
L+ + +V+D FNE ++VV+ R ++ VT Y+ D+AP+L R++ Y +
Sbjct: 643 ALYEEPDMLVKVVRDVFNEDFSRLVVEGDRPWNTVTDYIGDLAPELEPRLQRYFAKEHGG 702
Query: 467 IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
+F+ F I+E++ L ++V LP+GG+LVI++TEA+ IDVN G G G + E+ +
Sbjct: 703 ADVFEHFRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTGAGGNLEETVT 761
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRD+GG+IVVDFIDM N+ LV +K+A+ RDRS +VSE++
Sbjct: 762 RNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRLKEALGRDRSRHEVSEVT 821
Query: 587 RHGLMEITRKR 597
GL+++TRKR
Sbjct: 822 SLGLVQMTRKR 832
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ VLED+ LVE + Q ++YLG V ++P+M AF++IG R ++
Sbjct: 453 VGVLEDDLLVEHFVTSDTQTTQIGNIYLGRVQNVLPSMEAAFIDIGTDRNGVI 505
>gi|417850957|ref|ZP_12496769.1| ribonuclease E [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338220191|gb|EGP05740.1| ribonuclease E [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 999
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 37 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 89
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 90 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 138
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 139 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 198
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 199 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 248
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 249 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 306
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 307 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 366
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 367 RARIQISRISRFGLLEMSRQR 387
>gi|345429652|ref|YP_004822770.1| bifunctional ribonucleaseE: endoribonuclease/RNA-binding
protein/RNA degradosome binding protein [Haemophilus
parainfluenzae T3T1]
gi|301155713|emb|CBW15181.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
degradosome binding protein [Haemophilus parainfluenzae
T3T1]
Length = 933
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 186/307 (60%), Gaps = 14/307 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERIELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + ++++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKAHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|451976045|ref|ZP_21927217.1| ribonuclease E [Vibrio alginolyticus E0666]
gi|451930013|gb|EMD77735.1| ribonuclease E [Vibrio alginolyticus E0666]
Length = 1020
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFLNRVKKYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|386833840|ref|YP_006239154.1| ribonuclease, Rne/Rng family protein [Pasteurella multocida subsp.
multocida str. 3480]
gi|385200540|gb|AFI45395.1| ribonuclease, Rne/Rng family protein [Pasteurella multocida subsp.
multocida str. 3480]
Length = 1004
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|254229868|ref|ZP_04923273.1| ribonuclease E [Vibrio sp. Ex25]
gi|151937637|gb|EDN56490.1| ribonuclease E [Vibrio sp. Ex25]
Length = 1027
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFLNRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|444426073|ref|ZP_21221500.1| ribonuclease E [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444240697|gb|ELU52233.1| ribonuclease E [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 1032
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 209/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIKLVRPDFISRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|320156797|ref|YP_004189176.1| ribonuclease E [Vibrio vulnificus MO6-24/O]
gi|319932109|gb|ADV86973.1| ribonuclease E [Vibrio vulnificus MO6-24/O]
Length = 1033
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAKEYFPDGY-SYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + ++S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWAAIKDASES----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ YD +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFVNRVKKYDGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|326424118|ref|NP_761817.2| ribonuclease E [Vibrio vulnificus CMCP6]
gi|319999500|gb|AAO11344.2| Ribonuclease E [Vibrio vulnificus CMCP6]
Length = 1036
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/377 (36%), Positives = 206/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + P G +
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLK----EIAKEYFPDGY-SYQGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K L +G +VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PSIKEVLT--EGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK TL+ P+G GL +RT G S EEL+ DL LL W I + ++S
Sbjct: 146 DERTELKSALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWAAIKDASES----- 200
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++DS Y ++Q + PD +RV
Sbjct: 201 -----NPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFVNRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ YD +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N G
Sbjct: 256 KKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARV 373
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 374 QIGRISRFGLLEMSRQR 390
>gi|15602856|ref|NP_245928.1| hypothetical protein PM0991 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721318|gb|AAK03075.1| Rne [Pasteurella multocida subsp. multocida str. Pm70]
Length = 1004
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|388599758|ref|ZP_10158154.1| ribonuclease E [Vibrio campbellii DS40M4]
Length = 1032
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 209/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIKLVRPDFISRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|342904696|ref|ZP_08726495.1| hydroxyethylthiazole kinase [Haemophilus haemolyticus M21621]
gi|341953117|gb|EGT79631.1| hydroxyethylthiazole kinase [Haemophilus haemolyticus M21621]
Length = 751
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 200/352 (56%), Gaps = 29/352 (8%)
Query: 252 GESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLG 307
E +GF P ++ PDD QG + + E G +VIVQV KE G
Sbjct: 5 AERHGFLPLKEIAREYFPDDYVF---QGRPNIRDILSE--------GQEVIVQVNKEERG 53
Query: 308 TKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRT 365
KG LT + L + +++ + R G +SR+I G ERT LK +L PEG GL +RT
Sbjct: 54 NKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERTELKEALSSLDVPEGVGLIVRT 113
Query: 366 VAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQD 425
G S EELQ DL+ LL W+ I + +++ P L+H+ + ++D
Sbjct: 114 AGVGKSPEELQWDLKVLLHHWEAIKQASQNRP----------APFLIHQESDVIVRAIRD 163
Query: 426 YFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSK 485
Y + ++++DSP+ + + +++ + PD +RV+LY +PLF + IE +I + +
Sbjct: 164 YLRRDIGEILIDSPKVFEKAKEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQR 223
Query: 486 RVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDI 545
V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL AA +IAR+LRLRD+
Sbjct: 224 EVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNLEAADEIARQLRLRDL 281
Query: 546 GGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL+E++R+R
Sbjct: 282 GGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGLLEMSRQR 333
>gi|297194393|ref|ZP_06911791.1| ribonuclease E and G [Streptomyces pristinaespiralis ATCC 25486]
gi|297152254|gb|EDY62707.2| ribonuclease E and G [Streptomyces pristinaespiralis ATCC 25486]
Length = 603
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 188/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 195 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 254
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 255 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS----------GNAPT 304
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL DR++ + +F
Sbjct: 305 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWDTIHGYVSHVAPDLADRLQRWTSETDVF 364
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 365 AVHRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 423
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 424 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 483
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 484 VQMTRKR 490
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 98 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 156
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 157 MEAAFVDIGKGRNAVL 172
>gi|260361709|ref|ZP_05774736.1| ribonuclease E [Vibrio parahaemolyticus K5030]
gi|308111281|gb|EFO48821.1| ribonuclease E [Vibrio parahaemolyticus K5030]
Length = 657
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFINRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|37679450|ref|NP_934059.1| ribonuclease E [Vibrio vulnificus YJ016]
gi|37198194|dbj|BAC94030.1| ribonuclease E [Vibrio vulnificus YJ016]
Length = 1036
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/377 (36%), Positives = 206/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + P G +
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLK----EIAKEYFPDGY-SYQGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K L +G +VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PSIKEVLT--EGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK TL+ P+G GL +RT G S EEL+ DL LL W I + ++S
Sbjct: 146 DERTELKSALSTLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWAAIKDASES----- 200
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++DS Y ++Q + PD +RV
Sbjct: 201 -----NPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFVNRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ YD +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N G
Sbjct: 256 KKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARV 373
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 374 QIGRISRFGLLEMSRQR 390
>gi|410663308|ref|YP_006915679.1| ribonuclease, Rne/Rng family protein [Simiduia agarivorans SA1 =
DSM 21679]
gi|409025665|gb|AFU97949.1| ribonuclease, Rne/Rng family protein [Simiduia agarivorans SA1 =
DSM 21679]
Length = 880
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 184/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+
Sbjct: 38 LKEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERAELRD 97
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G G+ +RT G S EELQ DL+ L+ W N+ + A
Sbjct: 98 AINGLNVPQGMGIIVRTAGIGRSSEELQWDLDWLVQLWGNLSDAASG----------NKA 147
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L + + ++DY + V +++VD+ Y V++++ + P+ +++LY+ IP
Sbjct: 148 PAFLFQESNVIIRAIRDYLRQDVGEVIVDTREAYDLVSTFINQVMPNYHSKIKLYEDDIP 207
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ +E +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 208 LFNRYQVESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGGDIEETALQT 265
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRDIGG+ V+DFIDM + N+R V +++A+E DR+ V+V +S+
Sbjct: 266 NLEAATEIARQLRLRDIGGLAVIDFIDMQNAKNQREVENRIREALEMDRARVQVGRISKF 325
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 326 GLLEMSRQR 334
>gi|406038343|ref|ZP_11045698.1| ribonuclease E [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 1162
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 119 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 178
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 179 MLASLNIPRGMSVIVRTAGIGRSQEELQLDLQHLLDLWNQIQNTANS----------GPS 228
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 229 PMLVHQEAGVVTRAIRDYLRDDVSEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 288
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 289 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 346
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 347 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 406
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 407 GLMEMSRQR 415
>gi|329934590|ref|ZP_08284631.1| cytoplasmic axial filament protein CafA and Ribonuclease G
[Streptomyces griseoaurantiacus M045]
gi|329305412|gb|EGG49268.1| cytoplasmic axial filament protein CafA and Ribonuclease G
[Streptomyces griseoaurantiacus M045]
Length = 1455
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 186/307 (60%), Gaps = 10/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 779 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKSI 838
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W+ I + +K+ G P
Sbjct: 839 LKKVVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIKKKSKNG---------GTAPT 889
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL R+ + +F
Sbjct: 890 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWSTIHGYVSHVAPDLAPRLSRWTSETDVF 949
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 950 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 1008
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1009 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1068
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1069 VQMTRKR 1075
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 682 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQAVSYVGNVYLGKVQNVLPS 740
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 741 MEAAFIDIGKGRNAVL 756
>gi|374619916|ref|ZP_09692450.1| RNAse E [gamma proteobacterium HIMB55]
gi|374303143|gb|EHQ57327.1| RNAse E [gamma proteobacterium HIMB55]
Length = 902
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 202/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K ++ P K + +++GT+
Sbjct: 54 EAAFVDF-------GAERHGFLPLKEIAHQYYRSAAPSDGK-------MRIKDAIKEGTE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE GTKG LT Y L R+ +L+ + + G +SR+I G +R+ L+ L+
Sbjct: 100 VIVQVDKEERGTKGAALTTYISLPGRYMVLMPNNPKAGGISRRIEGDDRSELRDALNQLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P G G+ IRT G S EELQ DL+ LL W I E AADE LL++
Sbjct: 160 IPNGMGVIIRTAGVGRSAEELQWDLDYLLKLWAAISE-------AADEN---PPQTLLYQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++D + + ++ + P +R++ YD +PLF++F
Sbjct: 210 ESDVIIRAIRDYLKDDIDQVLIDEAHAHRQALDFVSMVMPKYQNRIKAYDDSLPLFNRFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
+E +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 270 VEGQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEQTALQTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM N+R V ++ A+E DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDMGGLVVIDFIDMNASKNQRAVENRMRDALEIDRARVQLGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|325579065|ref|ZP_08149021.1| ribonuclease E [Haemophilus parainfluenzae ATCC 33392]
gi|325159300|gb|EGC71434.1| ribonuclease E [Haemophilus parainfluenzae ATCC 33392]
Length = 937
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 186/307 (60%), Gaps = 14/307 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERIELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + ++++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKAHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|359427779|ref|ZP_09218824.1| ribonuclease E [Acinetobacter sp. NBRC 100985]
gi|358236846|dbj|GAB00363.1| ribonuclease E [Acinetobacter sp. NBRC 100985]
Length = 1127
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 102 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 161
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 162 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQSSASS----------GPS 211
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 212 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 271
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 272 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 329
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 330 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 389
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 390 GLMEMSRQR 398
>gi|332878125|ref|ZP_08445854.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332683863|gb|EGJ56731.1| ribonuclease, Rne/Rng family [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 514
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 193/316 (61%), Gaps = 14/316 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQ 355
++VQ+VKE + TKGP +++ + R+ +L+ DRI +S+KI + E+ RL+ + ++++
Sbjct: 122 ILVQIVKEPISTKGPRISSELSIAGRYLVLVPFSDRISISQKIESKSEKERLRKLLQSIK 181
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFG+ +RTVA G + EL KDL+ L + W L + + P +
Sbjct: 182 PKGFGVIVRTVAEGKKVAELDKDLQSLFNRW----------VLMCRKIQKAVYPSKVMSE 231
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
+ +T +I++D FN+ + VD+ + Y ++ Y+Q+IAP+ V+LY +P+F+KF+I
Sbjct: 232 VNRTGAILRDLFNDTFTGIHVDNEQLYEQIKKYVQEIAPEKESIVKLYRSSVPIFEKFHI 291
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V +P G LVIE TEAL IDVN G+ + +E L VNL AA +
Sbjct: 292 ERQIKTAFGRTVSMPKGAYLVIEHTEALHVIDVNSGNHS-NKNNDQETTALSVNLIAATE 350
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
IAR+LRLRD+GGIIVVDFIDMA N+R++++ ++ + DR+ K+ S+ GL++ITR
Sbjct: 351 IARQLRLRDMGGIIVVDFIDMASSDNRRILFDHLRDEMAEDRAKHKILPPSKFGLIQITR 410
Query: 596 KRAMMEQ--KADPENP 609
+R E K ENP
Sbjct: 411 QRVRQELNIKTKEENP 426
>gi|387813844|ref|YP_005429327.1| ribonuclease E [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381338857|emb|CCG94904.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA
degradosome binding protein [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 1056
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R +LK
Sbjct: 95 VSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDDRAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNGVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQFWEAITQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ Y +V S+++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDADNVYEDVLSFVRAVMPTFENKIKLYKDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGQDIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IV+DFIDM ++R V +++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALELDRARVQVGKISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
>gi|323359799|ref|YP_004226195.1| ribonuclease G and E [Microbacterium testaceum StLB037]
gi|323276170|dbj|BAJ76315.1| ribonuclease G and E [Microbacterium testaceum StLB037]
Length = 871
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 187/309 (60%), Gaps = 11/309 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L ++ G +V+VQV K+ +G KG LT+ L R+ + + + G+SRK+ ER RLK
Sbjct: 377 LALKSGDRVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPNGTMNGISRKLPDTERARLK 436
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K + PE G+ +RT A G + ++L +D++ L S W+++ K+
Sbjct: 437 KILKEVLPESSGVIVRTAAEGATEDQLTRDVQRLTSQWEHVSTQLKTIQ----------A 486
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LLH + IV+D FNE +M++ +++YL +APDL +RVE Y+
Sbjct: 487 PALLHSEPDLLVKIVRDVFNEDFTRMLIQGDEALQTISNYLAGVAPDLLERVEKYEGDQD 546
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
FD F + E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 547 PFDAFRVTEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKN 605
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++
Sbjct: 606 NLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLIECLSRDRTKHQVAEVTSL 665
Query: 589 GLMEITRKR 597
GL+++TRK+
Sbjct: 666 GLVQMTRKK 674
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKL 123
+ +++ V V+++ S +Q IAVLED LVE + + +VYLG V +
Sbjct: 279 EAEFLARREAVDRVMVVRSKAGRIQ-IAVLEDNVLVEHYVARNQDASLIGNVYLGRVQNV 337
Query: 124 VPNMGGAFVNIGNSRPSLM 142
+P+M AFV+IG R +++
Sbjct: 338 LPSMEAAFVDIGRGRNAVL 356
>gi|419839427|ref|ZP_14362834.1| ribonuclease E [Haemophilus haemolyticus HK386]
gi|386909287|gb|EIJ73962.1| ribonuclease E [Haemophilus haemolyticus HK386]
Length = 934
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 208/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 37 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 89
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 90 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 138
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK L PEG GL +RT G S EELQ DL+ LL W+ I + +++
Sbjct: 139 RIEGDERTELKEALSLLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNR 198
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 199 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDF 248
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 249 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 306
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +D
Sbjct: 307 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQD 366
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 367 RARIQISRISRFGLLEMSRQR 387
>gi|225351141|ref|ZP_03742164.1| hypothetical protein BIFPSEUDO_02729 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225158597|gb|EEG71839.1| hypothetical protein BIFPSEUDO_02729 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 455
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 191/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 61 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 120
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I DE + G
Sbjct: 121 NIVSKVAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERITSK-------RDEFLHGKR 173
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 174 PKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYGRIEEYLDTMAPDLKDKLEKWDPAEH 233
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 234 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 292
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 293 VTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 352
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 353 VTSLGLVQMTRKR 365
>gi|378773855|ref|YP_005176098.1| ribonuclease E [Pasteurella multocida 36950]
gi|356596403|gb|AET15129.1| ribonuclease E [Pasteurella multocida 36950]
Length = 1006
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S +
Sbjct: 154 ALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRS----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFIHRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|117921008|ref|YP_870200.1| RNAse E [Shewanella sp. ANA-3]
gi|117613340|gb|ABK48794.1| RNAse E [Shewanella sp. ANA-3]
Length = 1098
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 179/309 (57%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A+S
Sbjct: 154 AMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQHHWAAITEAAQS----------KPA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|149926439|ref|ZP_01914700.1| ribonuclease E [Limnobacter sp. MED105]
gi|149824802|gb|EDM84016.1| ribonuclease E [Limnobacter sp. MED105]
Length = 972
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 140/377 (37%), Positives = 209/377 (55%), Gaps = 31/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K + S +G + K
Sbjct: 40 NIYKGIITRVEPSLEACFVNYGEDRH-------GFLPFK----EISRQYFKEGVEAGKA- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ V++G ++ VQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 88 ---RIQDVVKEGQELFVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L+ P+G + RT G S+EELQ DL LL W I KSA A
Sbjct: 145 EERQELREALDKLEYPKGMSIIARTAGIGRSVEELQWDLNYLLQLWTAIDGAGKSANGA- 203
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
L+++ + ++DYF+ + ++++D+ Y + ++Q + PD+ + V
Sbjct: 204 ---------FLIYQESSLVIRAIRDYFSPDIGEVLIDTDEIYDQAKQFMQHVMPDMMNLV 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y IPLF +F IE +I S+ VPLP+GG++VI+ TEALVSIDVN G+
Sbjct: 255 KRYRDDIPLFSRFQIEHQIETAYSRMVPLPSGGAIVIDHTEALVSIDVNSARST--RGTD 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E L NL AA+++AR+LRLRD+GG+IV+DFIDM SN++ V VK ++ DR+ V
Sbjct: 313 IEDTALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEKASNQKEVENRVKDSLHFDRARV 372
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 373 QMGKISRFGLMELSRQR 389
Score = 42.4 bits (98), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 39/69 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATHSEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGIITRVEPSLEACFVNYGED 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|379057934|ref|ZP_09848460.1| ribonuclease, Rne/Rng family protein [Serinicoccus profundi MCCC
1A05965]
Length = 873
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 184/307 (59%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 371 LKSGESVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPGNSMTGISRKLPDTERSRLKKI 430
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G+ +RT A G S EL+ D+E L + W+ I AK+A P
Sbjct: 431 LKEVVPSDAGVIVRTAAEGASEAELRADVERLTAMWERIEAKAKTAN----------APS 480
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LLH T+ +++D FNE K+VV + + EV Y+ ++APDL +RVE +F
Sbjct: 481 LLHGEPDMTVRVIRDVFNEDFAKLVVSGEKAWDEVKHYIDEVAPDLAERVEKATGTTDVF 540
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ + E I + ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + N+
Sbjct: 541 TTYRVHEAIAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNI 599
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 600 EAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLLECLGRDRTKHQVAEVTSLGL 659
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 660 VQMTRKR 666
>gi|120554794|ref|YP_959145.1| ribonuclease [Marinobacter aquaeolei VT8]
gi|120324643|gb|ABM18958.1| RNAse E [Marinobacter aquaeolei VT8]
Length = 1056
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R +LK
Sbjct: 95 VSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDDRAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNGVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQFWEAITQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ Y +V S+++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDADNVYEDVLSFVRAVMPTFENKIKLYKDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGQDIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IV+DFIDM ++R V +++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALELDRARVQVGKISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
>gi|24374321|ref|NP_718364.1| ribonuclease E Rne [Shewanella oneidensis MR-1]
gi|24348868|gb|AAN55808.1| ribonuclease E Rne [Shewanella oneidensis MR-1]
Length = 1088
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A++ +GA
Sbjct: 154 AMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQHHWAAITEAAQT---------KGA- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y E ++ + PD +RV+LY+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHIALVRPDFVERVKLYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|257068982|ref|YP_003155237.1| ribonuclease, Rne/Rng family [Brachybacterium faecium DSM 4810]
gi|256559800|gb|ACU85647.1| ribonuclease, Rne/Rng family [Brachybacterium faecium DSM 4810]
Length = 952
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 188/312 (60%), Gaps = 14/312 (4%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L ++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK
Sbjct: 526 LALKSGDPVLVQVTKDPIGHKGARLTSQISLPGRYVVFVPGGSMTGISRKLPDTERARLK 585
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + + PE G+ +RT A G S EEL D+E L + W+ I + KS +
Sbjct: 586 KIMRQIIPEDAGVIVRTAAEGASEEELTHDVERLRAQWEKITKAQKSRS----------A 635
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+ L + + +V+D FNE ++V+ + + EV SY+ D+APDL DRV + P
Sbjct: 636 PVALSQEPDIAIKVVRDVFNEDFTSLIVEGDKVHDEVHSYVSDVAPDLLDRVTRHVPTSP 695
Query: 469 ---LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAI 525
+F K I+E++ + ++V LP+GGSLVI++TEA+ +DVN G G G S E+ +
Sbjct: 696 GKDVFAKHRIDEQLLKAMDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGSLEETV 754
Query: 526 LDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSEL 585
NL AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E+
Sbjct: 755 TKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEV 814
Query: 586 SRHGLMEITRKR 597
+ GL+++TRKR
Sbjct: 815 TSLGLVQMTRKR 826
Score = 46.6 bits (109), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLG 118
K S+I++ F++ + S+ +R IAVLED+ LVE + +VY+G
Sbjct: 422 KRSVITEAEFLARRESVKRSMVVRERPGRTQIAVLEDDVLVEHYVAQKSQTSMVGNVYMG 481
Query: 119 VVTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG R +++
Sbjct: 482 KVQNVLPSMEAAFVDIGKGRNAVL 505
>gi|373467463|ref|ZP_09558760.1| S1 RNA binding domain protein [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371758664|gb|EHO47427.1| S1 RNA binding domain protein [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 937
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 204/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LS 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G +RT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDDRTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L PEG GL +RT G S EELQ DL+ LL W+ I + +++ P
Sbjct: 156 SSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|254382749|ref|ZP_04998106.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194341651|gb|EDX22617.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 923
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 190/307 (61%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 268 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 327
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K + ++ P
Sbjct: 328 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKQISTSS--------PS 379
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 380 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDGAWETIHGYVNHVAPDLADRLSRWTSEVDVF 439
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ IDVN G G G + E+ + NL
Sbjct: 440 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGK-FTGQGGNLEETVTRNNL 498
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 499 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEVTSLGL 558
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 559 VQMTRKR 565
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 192 QIGVLEDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 245
>gi|378696596|ref|YP_005178554.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
degradosome binding protein [Haemophilus influenzae
10810]
gi|301169115|emb|CBW28712.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
degradosome binding protein [Haemophilus influenzae
10810]
Length = 932
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 203/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 93 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 153 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 203 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 380
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 381 LEMSRQR 387
>gi|358450696|ref|ZP_09161149.1| ribonuclease [Marinobacter manganoxydans MnI7-9]
gi|357225072|gb|EHJ03584.1| ribonuclease [Marinobacter manganoxydans MnI7-9]
Length = 1073
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK
Sbjct: 95 VSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDERAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNDVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQFWEAITQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ Y +V ++++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDANGVYEDVLNFVRAVMPTFENKIKLYKDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGQDIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IV+DFIDM ++R V +++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKIREALEIDRARVQVGKISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
>gi|30995373|ref|NP_438575.2| ribonuclease E [Haemophilus influenzae Rd KW20]
gi|1173095|sp|P44443.1|RNE_HAEIN RecName: Full=Ribonuclease E; Short=RNase E
Length = 935
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 185/307 (60%), Gaps = 14/307 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|319941547|ref|ZP_08015873.1| ribonuclease E [Sutterella wadsworthensis 3_1_45B]
gi|319804917|gb|EFW01759.1| ribonuclease E [Sutterella wadsworthensis 3_1_45B]
Length = 1169
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 210/394 (53%), Gaps = 38/394 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F D+ E H GF P K + S + +G T
Sbjct: 40 NIYMGVVTRIEPSLEACFIDYGEERH-------GFLPFK----EISRSYFAEGVDVRLAT 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
E + +G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 89 IKEA----IHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME--------- 391
ER L+ L+ P G RT G + EELQ DL LL W+ I +
Sbjct: 145 EERQELREAMDRLKLPNGMSTIARTAGIGRTTEELQWDLNYLLKLWEAITDAARPVYEYP 204
Query: 392 ----HAKSAALAADEGVEG----AVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYH 443
H K A G +G P L+ + ++DYF ++ +++VD+ Y
Sbjct: 205 TENGHTKLLPEAQINGKKGKRANPAPFLIVEESNLVVRAIRDYFQPEIGEILVDTDDIYE 264
Query: 444 EVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEAL 503
+ ++ + PD+ DRV+ Y IPLF +F IE++I S+ VPLP+GG++VI+ TEAL
Sbjct: 265 QARQFMAHVMPDMVDRVKRYRDDIPLFTRFQIEQQIETAYSRTVPLPSGGAIVIDHTEAL 324
Query: 504 VSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKR 563
V+IDVN G+ E+ N AA ++AR++RLRD+GG+IV+DFIDMA+ N+R
Sbjct: 325 VAIDVNSARAT--RGADIEETAFKTNCEAADEVARQMRLRDLGGLIVIDFIDMAEAKNQR 382
Query: 564 LVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
V + +K A+ DR+ V+ +++SR GLME++R+R
Sbjct: 383 AVEQRLKDAIRYDRARVQTAKISRFGLMELSRQR 416
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 39/69 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+ +++ +KL+++ +E + ++Y+GVVT++ P++ F++ G
Sbjct: 4 MLFNATHPEETRVGIVDGQKLIDIDIETAGREARKSNIYMGVVTRIEPSLEACFIDYGEE 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|269962048|ref|ZP_06176402.1| ribonuclease E [Vibrio harveyi 1DA3]
gi|269833132|gb|EEZ87237.1| ribonuclease E [Vibrio harveyi 1DA3]
Length = 1029
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAREHIQLVRPDFISRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|148825306|ref|YP_001290059.1| ribonuclease E [Haemophilus influenzae PittEE]
gi|148715466|gb|ABQ97676.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittEE]
Length = 935
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 207/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + + + + R G +SR
Sbjct: 93 I-----------LTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERTELKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|88859601|ref|ZP_01134241.1| RNase E [Pseudoalteromonas tunicata D2]
gi|88818618|gb|EAR28433.1| RNase E [Pseudoalteromonas tunicata D2]
Length = 1080
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 201/367 (54%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ H GF P +++ P D + S KD ++
Sbjct: 54 EAAFVDYGAQRH-------GFLPLKEIARTYFPKDYNFSGRPNIKDV-----------IK 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VI 350
+G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK +
Sbjct: 96 EGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTDLKDAL 155
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
++ P+G GL +RT G S EEL DL+ LL W I+ ++ +G P
Sbjct: 156 SRLELPKGMGLIVRTAGVGKSFEELDYDLKALLIHWDAIVTASE----------KGPAPF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ ++DY + ++++D R + E ++++ PD RV+LY +PLF
Sbjct: 206 LIHQESNVIFRAIRDYLRRDIGEILIDKTRVFEEAKAHIERFRPDFMSRVKLYKGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ + NL
Sbjct: 266 THYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETAFNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K+AV DR+ V++ ++SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKEAVRPDRARVQIGKISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|260580524|ref|ZP_05848352.1| ribonuclease E [Haemophilus influenzae RdAW]
gi|260092866|gb|EEW76801.1| ribonuclease E [Haemophilus influenzae RdAW]
Length = 947
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 185/307 (60%), Gaps = 14/307 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 108 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 167
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 168 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 217
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 218 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 277
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 278 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 335
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 336 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 395
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 396 LEMSRQR 402
>gi|424046880|ref|ZP_17784442.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HENC-03]
gi|408884940|gb|EKM23668.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HENC-03]
Length = 1029
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD RV+ Y+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAREHIQLVRPDFISRVKKYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|375256397|ref|YP_005015564.1| putative ribonuclease G [Tannerella forsythia ATCC 43037]
gi|363406384|gb|AEW20070.1| putative ribonuclease G [Tannerella forsythia ATCC 43037]
Length = 524
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 188/306 (61%), Gaps = 12/306 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +++VQ+ KE + TKGP LTA RF +LI D+I VS KI + ER RL+ + +
Sbjct: 119 GDEILVQIAKEPISTKGPRLTAELSFAGRFLVLIPFSDKISVSTKIKSNEERARLRQLMQ 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ F + +RT A G + EL +L+ LL W++ + + P L+
Sbjct: 179 SVKPKNFSVIVRTSAEGKRVAELDGELKNLLKRWEDHIPKVP----------QSKAPTLI 228
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ +T+++++D FN + + V++ + Y V Y+ IAP+ + V+LY +P+FDK
Sbjct: 229 YEETARTVALLRDIFNASFEHIYVNNKQVYENVYDYVSLIAPEQKNIVKLYTDDMPIFDK 288
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F + +I ++ + V +G L+IE TEA+ IDVN G+ M G + +EK DVN+AA
Sbjct: 289 FGVTRQIKSLFGRTVTYKSGAYLIIEHTEAMHVIDVNSGNRMKG-STEQEKTAFDVNIAA 347
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GGIIV+DFID+A+ SN++ +YE + KA+ DR+ + LS+ LM+
Sbjct: 348 ANEIARQLRLRDMGGIIVIDFIDLAEASNRQQLYEHMTKAMANDRAKHNILPLSKFCLMQ 407
Query: 593 ITRKRA 598
ITR+R
Sbjct: 408 ITRQRV 413
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IAVLED+ LVEL EP + ++YL + KL+P + AFV++G + + + HY++
Sbjct: 16 IAVLEDKSLVELQKEPRSDSFAVGNIYLARIKKLLPGLNAAFVDVGCKKDAFL---HYQD 72
Query: 150 PFIFPPFRCRTK 161
+ P F + K
Sbjct: 73 --LGPNFNTQQK 82
>gi|212716706|ref|ZP_03324834.1| hypothetical protein BIFCAT_01641 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660410|gb|EEB20985.1| hypothetical protein BIFCAT_01641 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 483
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 89 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 148
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I AK DE + G
Sbjct: 149 NIVSKVAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERIT--AKR-----DEFLHGKR 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 202 PKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYGRIEEYLDTMAPDLKDKLEKWDPAEH 261
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 262 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 320
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 321 VTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 380
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 381 VTSLGLVQMTRKR 393
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 15 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 68
>gi|425733940|ref|ZP_18852260.1| putative ribonuclease [Brevibacterium casei S18]
gi|425482380|gb|EKU49537.1| putative ribonuclease [Brevibacterium casei S18]
Length = 975
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 185/304 (60%), Gaps = 9/304 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ VER RLK + K
Sbjct: 454 GDSVLVQVTKDPVGHKGARLTSQISLPGRFLVYVPGNSMTGISRKLPDVERARLKKLLKE 513
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
L + G+ +RT A G + +EL +D+E L W+ I + +KS + A P LL+
Sbjct: 514 LVGDSNGVIVRTAAEGATDKELSRDVERLTKRWETIEKKSKSTKVLA--------PQLLY 565
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ I++D FNE +V+D ++ + Y++ +APDL DRV Y + +FD +
Sbjct: 566 SEPDMIVRIIRDVFNEDFNSLVIDGDGAWNTIHEYVEAVAPDLLDRVHRYSEDDGIFDHY 625
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
+EE+I L++ V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL AA
Sbjct: 626 RVEEQIQKALNRTVNLPSGGSLVIDRTEAMTVIDVNTGK-FTGAGGNLEETVTRNNLEAA 684
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++ R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 685 DEVIRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLGRDRTKHQVAEVTSLGLVQM 744
Query: 594 TRKR 597
TRKR
Sbjct: 745 TRKR 748
>gi|302534384|ref|ZP_07286726.1| predicted protein [Streptomyces sp. C]
gi|302443279|gb|EFL15095.1| predicted protein [Streptomyces sp. C]
Length = 1071
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 190/307 (61%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 392 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 451
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K ++ P
Sbjct: 452 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKQITTSS--------PS 503
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+++ + + + Y+ +APDL DR+ + + +F
Sbjct: 504 LLYGEPDMTVRVVRDIFNEDFSKVIISGDQAWETIHGYVNHVAPDLADRLSRWTSEVDVF 563
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ IDVN G G G + E+ + NL
Sbjct: 564 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGK-FTGQGGNLEETVTRNNL 622
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 623 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEVTSLGL 682
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 683 VQMTRKR 689
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 295 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPS 353
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 354 MEAAFIDIGKGRNAVL 369
>gi|294775456|ref|ZP_06740969.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
gi|294450697|gb|EFG19184.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
Length = 537
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 191/309 (61%), Gaps = 11/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 129 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 188
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 189 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAP---------KLP 239
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ +HE+ Y+ IAP+ + V+LY ++P+
Sbjct: 240 ALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLPI 299
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 300 FDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 358
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 359 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 418
Query: 590 LMEITRKRA 598
LM+ITR+R
Sbjct: 419 LMQITRQRV 427
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ ++YLG V KL+P + FV++G + + + HY
Sbjct: 29 IALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDVGFEKDAFL---HY 83
>gi|145628780|ref|ZP_01784580.1| ribonuclease E [Haemophilus influenzae 22.1-21]
gi|144979250|gb|EDJ88936.1| ribonuclease E [Haemophilus influenzae 22.1-21]
Length = 935
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 203/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LV 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|212691237|ref|ZP_03299365.1| hypothetical protein BACDOR_00728 [Bacteroides dorei DSM 17855]
gi|212666469|gb|EEB27041.1| S1 RNA binding domain protein [Bacteroides dorei DSM 17855]
Length = 537
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 191/309 (61%), Gaps = 11/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 129 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 188
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 189 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAP---------KLP 239
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ +HE+ Y+ IAP+ + V+LY ++P+
Sbjct: 240 ALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLPI 299
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 300 FDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 358
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 359 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 418
Query: 590 LMEITRKRA 598
LM+ITR+R
Sbjct: 419 LMQITRQRV 427
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ ++YLG V KL+P + FV++G + + + HY
Sbjct: 29 IALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDVGFEKDAFL---HY 83
>gi|170782192|ref|YP_001710525.1| ribonuclease [Clavibacter michiganensis subsp. sepedonicus]
gi|169156761|emb|CAQ01923.1| putative ribonuclease [Clavibacter michiganensis subsp.
sepedonicus]
Length = 1015
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 184/309 (59%), Gaps = 11/309 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
+ ++ G +V+VQV K+ +G KG LT+ L R+ + + + G+SRK+ ER RLK
Sbjct: 446 VALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMNGISRKLPDTERARLK 505
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
K + PE G+ +RT A G + E+L+ D+E L S W I + A
Sbjct: 506 KTLKEVLPENVGVIVRTAAEGATEEQLKLDVERLTSQWAEISRQVEKAQ----------A 555
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LLH L I++D FNE +++V+D + YL+ +APDL DRV+ Y
Sbjct: 556 PALLHSEPDLLLKIIRDVFNEDFRELVIDGGDAQEIIEGYLRGVAPDLIDRVQAYSGEKD 615
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
FD + + E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 616 SFDHYRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKN 674
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R++RLRDIGGIIVVDFIDM ++N+ LV + + + RDR+ +V+E++
Sbjct: 675 NLEAAEEIVRQMRLRDIGGIIVVDFIDMVLETNRDLVLRRLVECLSRDRTKHQVAEVTSL 734
Query: 589 GLMEITRKR 597
GL+++TRK+
Sbjct: 735 GLVQMTRKK 743
>gi|1573386|gb|AAC22072.1| ribonuclease E (rne) [Haemophilus influenzae Rd KW20]
Length = 951
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 203/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 70 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LV 111
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 171
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 172 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 221
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 222 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 281
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 282 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 339
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 340 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 399
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 400 LEMSRQR 406
>gi|422324691|ref|ZP_16405728.1| hypothetical protein HMPREF0737_00838 [Rothia mucilaginosa M508]
gi|353343845|gb|EHB88159.1| hypothetical protein HMPREF0737_00838 [Rothia mucilaginosa M508]
Length = 1263
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 181/304 (59%), Gaps = 9/304 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I K
Sbjct: 481 GDSVLVQVTKDPIGHKGARLTSQVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKD 540
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
PEG G+ +RT A G S EEL D+ L + W+ I E A S + A P +L+
Sbjct: 541 KLPEGAGVIVRTAAEGASEEELTHDINRLRAQWEEIQEKANSRKVLA--------PEMLY 592
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + V+D FNE M+V + + +Y+ +APDL R++ +D LFD +
Sbjct: 593 QEPDLMIKTVRDVFNEDFTAMIVQGENAWDSIEAYVTYVAPDLVSRLQQWDSADDLFDHY 652
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 653 RINEQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 711
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 712 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQM 771
Query: 594 TRKR 597
TRKR
Sbjct: 772 TRKR 775
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V +L+ +Q I VLED L E + + + +VYLG V ++P+
Sbjct: 381 FLARRESVDRQMLVRQKDGRIQ-IGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPS 439
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 440 MEAAFVDIGRGRNAVL 455
>gi|405980882|ref|ZP_11039211.1| rne/Rng family ribonuclease [Actinomyces neuii BVS029A5]
gi|404392901|gb|EJZ87958.1| rne/Rng family ribonuclease [Actinomyces neuii BVS029A5]
Length = 784
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 190/307 (61%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G K++VQV K+ +G KG LTA L R+ +++ + +G+SRK+ G ER+RLK I
Sbjct: 285 LKSGDKIMVQVTKDPIGHKGARLTAQITLAGRYLVMVPGGNMMGISRKLPGSERSRLKSI 344
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P+G G+ +RT A G + E+++ D+E L S W+++ + + A A P+
Sbjct: 345 LKDVVPKGNGVIVRTAAEGATEEQIRADIERLASQWQSVQDKSAKATKA---------PM 395
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL L +V+D FNE +VV Y + Y+++++PDL DRV + K +F
Sbjct: 396 LLKGEPELALRVVRDIFNEDFNSLVVQGKDAYKSIHDYVKELSPDLLDRVHQWAKNDDIF 455
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
I+E++ + ++V LP+GG L+I++TEA+ IDVN G G + E+ + NL
Sbjct: 456 AAHRIDEQLAKGMDRKVWLPSGGYLIIDRTEAMTVIDVNTGKYTGGKQGTLEETVTKNNL 515
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
+A++I R+LRLRDIGGIIV+DF+DM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 516 ESAEEIVRQLRLRDIGGIIVIDFVDMVLESNRSLVLRRLIECLGRDRTRHQVTEVTALGL 575
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 576 VQMTRKR 582
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ +IAVLED+ LVE + S++LG V ++P+M AFV++G R +++
Sbjct: 207 LNQIAVLEDDLLVEHYVASHTQVSMVGSIFLGRVQNVLPSMEAAFVDLGRGRNAVL 262
>gi|262374096|ref|ZP_06067373.1| ribonuclease E [Acinetobacter junii SH205]
gi|262311107|gb|EEY92194.1| ribonuclease E [Acinetobacter junii SH205]
Length = 1119
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILSSLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQSSASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|163803776|ref|ZP_02197631.1| ribonuclease E [Vibrio sp. AND4]
gi|159172417|gb|EDP57288.1| ribonuclease E [Vibrio sp. AND4]
Length = 1029
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/394 (35%), Positives = 209/394 (53%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + S + P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGASDS----------NSAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++ +DS Y +++ + PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEISIDSNTIYERAKEHIKLVRPDFVSRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 388 RQRL---------SPS-----LAEASHHICPRCT 407
>gi|72162582|ref|YP_290239.1| ribonuclease E and G [Thermobifida fusca YX]
gi|71916314|gb|AAZ56216.1| ribonuclease E and G [Thermobifida fusca YX]
Length = 908
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 183/307 (59%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 455 LKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPDGSMTGISRKLPDKERARLKQI 514
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G G+ +RT A G S EEL++D+ L W++I AKSA P
Sbjct: 515 LKKVMPNGAGVIVRTAAEGASEEELERDIARLSQQWESIKRKAKSA----------TAPA 564
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL T+ +V+D FNE +VV + + Y+ +AP L DR+ + + +F
Sbjct: 565 LLSSEPDLTIRVVRDIFNEDFSSLVVSGDDAWETIRDYVNQVAPHLADRLSHWTEDRDIF 624
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ + I+E+I L ++V LP+GGSL+I++TEA+ IDVN G G G + E+ + NL
Sbjct: 625 EAYRIDEQIAKALERKVWLPSGGSLIIDRTEAMTVIDVNTGK-FTGQGGNLEETVTKNNL 683
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 684 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMLECLSRDRTKHQVAEVTSLGL 743
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 744 VQMTRKR 750
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 79 LINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSR 138
LI I +IAVLED LVE ++ +VYLG V ++P+M AFV+IG R
Sbjct: 369 LIVRRIGERTQIAVLEDNVLVEHYVDRADHKSYVGNVYLGRVQNVLPSMEAAFVDIGKGR 428
Query: 139 PSLM 142
+++
Sbjct: 429 NAVL 432
>gi|423313969|ref|ZP_17291904.1| rne/Rng family ribonuclease [Bacteroides vulgatus CL09T03C04]
gi|392683567|gb|EIY76901.1| rne/Rng family ribonuclease [Bacteroides vulgatus CL09T03C04]
Length = 524
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 191/309 (61%), Gaps = 11/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAP---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ +HE+ Y+ IAP+ + V+LY ++P+
Sbjct: 227 ALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 287 FDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRA 598
LM+ITR+R
Sbjct: 406 LMQITRQRV 414
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDVGFEKDAFL---HY 70
>gi|145634590|ref|ZP_01790299.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittAA]
gi|145268135|gb|EDK08130.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittAA]
Length = 935
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 185/307 (60%), Gaps = 14/307 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|150006583|ref|YP_001301327.1| ribonuclease G [Bacteroides vulgatus ATCC 8482]
gi|265752042|ref|ZP_06087835.1| ribonuclease G [Bacteroides sp. 3_1_33FAA]
gi|319642900|ref|ZP_07997536.1| ribonuclease G [Bacteroides sp. 3_1_40A]
gi|345512926|ref|ZP_08792450.1| ribonuclease G [Bacteroides dorei 5_1_36/D4]
gi|345521606|ref|ZP_08800929.1| ribonuclease G [Bacteroides sp. 4_3_47FAA]
gi|423229300|ref|ZP_17215705.1| rne/Rng family ribonuclease [Bacteroides dorei CL02T00C15]
gi|423240123|ref|ZP_17221238.1| rne/Rng family ribonuclease [Bacteroides dorei CL03T12C01]
gi|423245143|ref|ZP_17226217.1| rne/Rng family ribonuclease [Bacteroides dorei CL02T12C06]
gi|149935007|gb|ABR41705.1| ribonuclease G [Bacteroides vulgatus ATCC 8482]
gi|229434993|gb|EEO45070.1| ribonuclease G [Bacteroides dorei 5_1_36/D4]
gi|263236834|gb|EEZ22304.1| ribonuclease G [Bacteroides sp. 3_1_33FAA]
gi|317385448|gb|EFV66391.1| ribonuclease G [Bacteroides sp. 3_1_40A]
gi|345456518|gb|EET14617.2| ribonuclease G [Bacteroides sp. 4_3_47FAA]
gi|392634269|gb|EIY28194.1| rne/Rng family ribonuclease [Bacteroides dorei CL02T00C15]
gi|392640076|gb|EIY33882.1| rne/Rng family ribonuclease [Bacteroides dorei CL02T12C06]
gi|392645112|gb|EIY38846.1| rne/Rng family ribonuclease [Bacteroides dorei CL03T12C01]
Length = 524
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 191/309 (61%), Gaps = 11/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAP---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ +HE+ Y+ IAP+ + V+LY ++P+
Sbjct: 227 ALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 287 FDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRA 598
LM+ITR+R
Sbjct: 406 LMQITRQRV 414
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDVGFEKDAFL---HY 70
>gi|260906318|ref|ZP_05914640.1| putative ribonuclease [Brevibacterium linens BL2]
Length = 1076
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 184/304 (60%), Gaps = 9/304 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ VER RLK + K
Sbjct: 528 GDAVLVQVTKDPIGHKGARLTSQISLPGRFLVYVPGNSMTGISRKLPDVERNRLKKLLKE 587
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
L + G+ +RT A G S +EL D+E L W+ I + +KS + A P LL+
Sbjct: 588 LVGDSNGVIVRTAAEGASDKELSTDVERLAKRWETIEKKSKSTKVLA--------PQLLY 639
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ I++D FNE +V+D ++ + Y++ +APDL DRV Y + +FD +
Sbjct: 640 SEPDMIVRIIRDVFNEDFSSLVIDGDGAWNTIHEYVEAVAPDLLDRVHRYSEDEDIFDHY 699
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
+EE++ L + V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL AA
Sbjct: 700 RVEEQVQKALQRTVNLPSGGSLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTRNNLEAA 758
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
+++ R++RLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 759 EEVIRQVRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLGRDRTKHQVAEVTSLGLVQM 818
Query: 594 TRKR 597
TRKR
Sbjct: 819 TRKR 822
>gi|336311180|ref|ZP_08566147.1| ribonuclease E [Shewanella sp. HN-41]
gi|335865396|gb|EGM70422.1| ribonuclease E [Shewanella sp. HN-41]
Length = 1052
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 27 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 86
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A++ +GA
Sbjct: 87 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEAAQT---------KGA- 136
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 137 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 196
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 197 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 254
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 255 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 314
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 315 GLMEMSRQR 323
>gi|237712331|ref|ZP_04542812.1| ribonuclease G [Bacteroides sp. 9_1_42FAA]
gi|229453652|gb|EEO59373.1| ribonuclease G [Bacteroides sp. 9_1_42FAA]
Length = 524
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 191/309 (61%), Gaps = 11/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAP---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ +HE+ Y+ IAP+ + V+LY ++P+
Sbjct: 227 ALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 287 FDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRA 598
LM+ITR+R
Sbjct: 406 LMQITRQRV 414
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDVGFEKDAFL---HY 70
>gi|453050306|gb|EME97850.1| ribonuclease, Rne/Rng family [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 1407
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 191/307 (62%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 751 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 810
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K + ++ P
Sbjct: 811 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKMISTSS--------PS 862
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ + + +F
Sbjct: 863 LLYGEPDMTVRVVRDIFNEDFSKVIVSGEGAWETIHGYVSHVAPDLVDRLQKWTSDVDVF 922
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 923 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 981
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 982 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1041
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1042 VQMTRKR 1048
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 675 QIGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 728
>gi|451981880|ref|ZP_21930218.1| putative Ribonuclease E [Nitrospina gracilis 3/211]
gi|451760885|emb|CCQ91488.1| putative Ribonuclease E [Nitrospina gracilis 3/211]
Length = 732
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 217/385 (56%), Gaps = 35/385 (9%)
Query: 221 EVLK-NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQ-GT 276
E+LK NV +I EP EA F DF G+ GF P K D S+ Q G
Sbjct: 38 ELLKGNVYLGVITRVEPAIEACFVDF-------GGKKYGFLPFK----DVLRESYLQTGE 86
Query: 277 KDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ SK T +Q + +G K++VQVVKE KGP+LT + RF +L+ S + G
Sbjct: 87 RKSK------TRIQDVLIRGQKLLVQVVKESRDAKGPSLTNAVTIPGRFLVLMCSKETSG 140
Query: 335 VSRKITG-VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEH 392
+SRKI ER ++K + LQ PE G+ +RT G + ELQKDL+ L+ W+ I E
Sbjct: 141 ISRKIEDESERKKMKEVLSDLQLPEDMGVILRTAGMGRTKLELQKDLQMLMKIWEGIQEK 200
Query: 393 AKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDI 452
+ E P LL++ + V+D+F +++VD+ +Y V +++ +
Sbjct: 201 LQDP--------ESKAPCLLYKVPDMVVRTVRDHFTNDTSEIIVDNAESYKAVKEFMRLV 252
Query: 453 APDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGH 512
P + +R++ + P+F ++ IEE+I N+ KRV LP+GGSLV + EA+V+IDVN G
Sbjct: 253 MPRMRNRIKYSQETKPIFSQYKIEEQIENIYKKRVDLPSGGSLVFDVGEAMVAIDVNSGK 312
Query: 513 GMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKA 572
S E N+ AA++I R+LRLRD+GG+IV+DFIDM NK V +E+KK+
Sbjct: 313 TT--SSSDLEDTATRTNMEAAEEIGRQLRLRDLGGLIVIDFIDMFSKKNKSNVEKEIKKS 370
Query: 573 VERDRSMVKVSELSRHGLMEITRKR 597
+ D++ + +S +SR GL+E++R+R
Sbjct: 371 CKSDKARINISRISRFGLLEMSRQR 395
>gi|238022128|ref|ZP_04602554.1| hypothetical protein GCWU000324_02034 [Kingella oralis ATCC 51147]
gi|237866742|gb|EEP67784.1| hypothetical protein GCWU000324_02034 [Kingella oralis ATCC 51147]
Length = 967
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 192/318 (60%), Gaps = 16/318 (5%)
Query: 284 GEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT 340
G K +Q +++G +VIVQV K+ G KG LT Y L R+ +L+ + R G VSR+I
Sbjct: 83 GGKVRIQDVLKEGMQVIVQVEKDERGNKGAALTTYISLAGRYLVLMPNNPRGGGVSRRIE 142
Query: 341 GVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALA 399
G +R LK +A+ P G L RT G + EEL D LL W+ I E AA A
Sbjct: 143 GEDRAELKEAMAQLDVPHGMSLIARTAGIGRTSEELAWDFNYLLQLWRAIEE----AAAA 198
Query: 400 ADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
E P LL + ++DYF + +++VD+P Y +V+ ++ + P+ R
Sbjct: 199 HPE------PYLLFMESSLVIRAIRDYFRPDIGEILVDNPEVYEQVSEFMSYVMPNNLGR 252
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
++LYD IPLF + IE++I + S+ V LP+GG++VI+ TEALVS+DVN G+
Sbjct: 253 LKLYDDHIPLFSRLQIEQQIETVFSREVTLPSGGAIVIDHTEALVSVDVNSARST--RGA 310
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E+ N+ AA+++AR++RLRD+GG++V+DFIDM D ++R V +K A++RDR+
Sbjct: 311 DIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQREVENTLKDALKRDRAR 370
Query: 580 VKVSELSRHGLMEITRKR 597
V++ +LS+ GL+E++R+R
Sbjct: 371 VQMGKLSKFGLLELSRQR 388
>gi|34497275|ref|NP_901490.1| ribonuclease E [Chromobacterium violaceum ATCC 12472]
gi|34103131|gb|AAQ59494.1| probable ribonuclease E [Chromobacterium violaceum ATCC 12472]
Length = 981
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 218/395 (55%), Gaps = 45/395 (11%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ V K N+ +I EP EA F D+ E +GF P K +
Sbjct: 26 DLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDY-------GTERHGFLPFK-----EV 73
Query: 269 HTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWIL 326
S+ QG G + +Q +++G +V+VQV K+ G KG LT Y L R+ +L
Sbjct: 74 SRSYFQGYD------GGRPRIQDVLREGMEVVVQVEKDERGNKGAALTTYISLAGRYLVL 127
Query: 327 ITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLS 384
+ + R G VSR+I G ER LK + L+ P G L RT G +LEELQ DL L+
Sbjct: 128 MPNNPRGGGVSRRIEGEERQELKDLLSQLEVPHGMSLIARTAGIGRNLEELQWDLGYLMQ 187
Query: 385 TWKNIMEHAKSAALAADEGVEGA--VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTY 442
W+ I EG GA P L+ + + ++DYF+ + ++++D+ +
Sbjct: 188 LWRAI------------EGAAGAQSAPFLILQEGSLVIRAIRDYFHPDIGEVLIDTEEIH 235
Query: 443 HEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEA 502
+ ++ + P++ RV+LY +PLF +F IE +I S+ V LP+GG++VI+ TEA
Sbjct: 236 DQARQFMSHVMPNMLSRVKLYKDHVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEA 295
Query: 503 LVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNK 562
LVSIDVN G+ E+ + NL AA++IAR+LRLRD+GG++V+DFIDM + N+
Sbjct: 296 LVSIDVNSARAT--KGADIEETAVKTNLEAAEEIARQLRLRDLGGLVVIDFIDMENPKNQ 353
Query: 563 RLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
R V ++ ++ DR+ V++ +LSR GL+E++R+R
Sbjct: 354 RDVENRLRDVLKHDRARVQMGKLSRFGLLELSRQR 388
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KLV+L +E V + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|325300025|ref|YP_004259942.1| ribonuclease, Rne/Rng family [Bacteroides salanitronis DSM 18170]
gi|324319578|gb|ADY37469.1| ribonuclease, Rne/Rng family [Bacteroides salanitronis DSM 18170]
Length = 524
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 196/325 (60%), Gaps = 13/325 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAT---------KMP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ Y+EV +Y+ IAP+ V+LY ++P+
Sbjct: 227 TLVYEETSRTVAMLRDLFNPSYENIYVNDETVYNEVKNYVALIAPERVGIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K V +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 287 FDNFAITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRA--MMEQKADPENPKSW 612
LM+ITR+R M+ D P +
Sbjct: 406 LMQITRQRVRPAMDVTTDENCPTCF 430
>gi|294791357|ref|ZP_06756514.1| ribonuclease, Rne/Rng family [Scardovia inopinata F0304]
gi|294457828|gb|EFG26182.1| ribonuclease, Rne/Rng family [Scardovia inopinata F0304]
Length = 941
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 187/308 (60%), Gaps = 12/308 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LTA + R+ +L+ + GVSRK+ ERTRLK I
Sbjct: 523 GDNVLVQVTKDPIGHKGARLTAQITVAGRYLVLVPAGGITGVSRKLPERERTRLKNIVSK 582
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ IRT A G S E +Q DLE L+ W+N+ + K E P LL
Sbjct: 583 IAPDNMGVIIRTAADGASEEAIQHDLEHLVKKWENVEKKLK-------EYQSSKRPHLLQ 635
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR----IPL 469
+ +++D FN+ KK+VV+ Y+ + YL++ APD+ DR+E +D +
Sbjct: 636 GEPDVVIRVIRDIFNDDFKKLVVEGDSVYNRIKEYLEEAAPDMLDRLEKWDPEEHEGKDV 695
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FDK++I+ ++ + ++V LP+GGSL++++TEA+ +IDVN G G G S E + N
Sbjct: 696 FDKWSIDSQLRKGMERKVYLPSGGSLIVDRTEAMTTIDVNTGR-FIGKGQSLEATVTKCN 754
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRDIGG+I++DF+DM N+ LV + + + RDR+ +V+E++ G
Sbjct: 755 LEAAEEIVRQLRLRDIGGMIMIDFVDMVMPQNRDLVLRRLVECLSRDRTKHQVAEVTSLG 814
Query: 590 LMEITRKR 597
L+++TRKR
Sbjct: 815 LVQMTRKR 822
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
SL+++ +F++ ++ + +R ++V+ED LVE + ++ ++Y G V
Sbjct: 416 SLVTEQDFLARRENVDRLMVVRERGRHSQVSVIEDNVLVEHYISDIEEVSSVGNIYQGRV 475
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R ++
Sbjct: 476 QNVLPSMEAAFVDIGQYRNGVL 497
>gi|91203270|emb|CAJ72909.1| strongly similar to ribonuclease E (RNase E) [Candidatus Kuenenia
stuttgartiensis]
Length = 509
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKV 349
+Q+G +++VQV KE LGTKGP+LT Y L R+ +L+ R GVS+KIT E R RLK
Sbjct: 107 LQQGKEILVQVTKESLGTKGPSLTTYISLPGRYLVLMPEVKRYGVSKKITEEEERQRLKK 166
Query: 350 IAKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I ++L P + G +RT + ELQKD LL WKNI + +K E
Sbjct: 167 ILESLNPPKNIGFIVRTAGVQQTKRELQKDFHYLLKLWKNICKKSK----------EIDA 216
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P ++++ + +++D F++ + +++VDS + +L+ I P +++ Y+K P
Sbjct: 217 PGVIYQESDLVIRVIRDIFSQDINEIIVDSESVFKRTREFLRIIMPKYEKQLKFYNKEKP 276
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE I + S+++PL +GGS+V+EQTEALV+IDVN G + E+
Sbjct: 277 LFHNFGIENAIEEINSRKIPLLHGGSIVLEQTEALVAIDVNSGK--YKGKCDPEETAFRT 334
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AAK+IAR++RLRD+GG+IV+DFIDM ++ + + V + + +++R R+ K+ ++S+
Sbjct: 335 NMIAAKEIARQIRLRDLGGVIVIDFIDMRNEKHIQAVEKAIADSLKRHRARTKMLKMSKF 394
Query: 589 GLMEITRKR 597
G +EITR+R
Sbjct: 395 GTIEITRQR 403
>gi|226951904|ref|ZP_03822368.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter sp. ATCC 27244]
gi|294649163|ref|ZP_06726604.1| ribonuclease E (RNase E) [Acinetobacter haemolyticus ATCC 19194]
gi|226837444|gb|EEH69827.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter sp. ATCC 27244]
gi|292824961|gb|EFF83723.1| ribonuclease E (RNase E) [Acinetobacter haemolyticus ATCC 19194]
Length = 1143
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ + GF S E+ +
Sbjct: 46 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY-------GAQRQGFL-SMREIANSY 97
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 98 FKADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 149
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I TL P G + +RT G + EELQ DL+ LL W
Sbjct: 150 NNPKGGGISRQISGSVREELKEILATLNIPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 209
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A + G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 210 AQIQSSAST----------GPSPMLVHQEAGVVTRAIRDYLRDDVGEILIDSEQAYNEAY 259
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 260 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 319
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V
Sbjct: 320 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 377
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 378 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 408
>gi|255326316|ref|ZP_05367401.1| ribonuclease, Rne/Rng family [Rothia mucilaginosa ATCC 25296]
gi|255296610|gb|EET75942.1| ribonuclease, Rne/Rng family [Rothia mucilaginosa ATCC 25296]
Length = 1148
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 181/304 (59%), Gaps = 9/304 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I K
Sbjct: 364 GDSVLVQVTKDPIGHKGARLTSQVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKD 423
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
PEG G+ +RT A G S EEL D+ L + W+ I E A S + A P +L+
Sbjct: 424 KLPEGAGVIVRTAAEGASEEELTHDINRLRAQWEEIQEKANSRKVLA--------PEMLY 475
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + V+D FNE M+V + + +Y+ +APDL R++ +D LFD +
Sbjct: 476 QEPDLMIKTVRDVFNEDFTAMIVQGENAWDSIEAYVTYVAPDLVSRLQKWDSADDLFDHY 535
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 536 RINEQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 594
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 595 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQM 654
Query: 594 TRKR 597
TRKR
Sbjct: 655 TRKR 658
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V +L+ +Q I VLED L E + + + +VYLG V ++P+
Sbjct: 264 FLARRESVDRQMLVRQKDGRIQ-IGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPS 322
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 323 MEAAFVDIGRGRNAVL 338
>gi|260776341|ref|ZP_05885236.1| ribonuclease E [Vibrio coralliilyticus ATCC BAA-450]
gi|260607564|gb|EEX33829.1| ribonuclease E [Vibrio coralliilyticus ATCC BAA-450]
Length = 973
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 201/366 (54%), Gaps = 34/366 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKS---EVPDDSHTSHPQGTKDSKHTPGEKTWLQVQK 293
EA F D+ E +GF P K E D +T QG K + +
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIAREYFPDGYTY--QGRPSIKEV--------LTE 93
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK
Sbjct: 94 GQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALD 153
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
TL P+G GL +RT G S EEL+ DL LL+ W I + + + P+L
Sbjct: 154 TLDLPKGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDA----------NPAPLL 203
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + ++++DS Y ++Q + PD +RV+ YD +PLF
Sbjct: 204 IHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIQLVRPDFVNRVKKYDGEVPLFS 263
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL
Sbjct: 264 HYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLE 321
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+
Sbjct: 322 AADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRLDRARVQIGRISRFGLL 381
Query: 592 EITRKR 597
E++R+R
Sbjct: 382 EMSRQR 387
>gi|442611423|ref|ZP_21026129.1| Ribonuclease E [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441747351|emb|CCQ12191.1| Ribonuclease E [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 1082
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 199/367 (54%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P +K PD S KD ++
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAKQYFPDGYSFSGRPNIKDV-----------IK 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VI 350
+G +VIVQ+ KE G KG LT + + + +L+ + R G +SR+I G ER LK +
Sbjct: 96 EGQEVIVQIDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERIELKDTL 155
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
++ P G GL +RT G S EEL+ DL+ LL W I A+S P
Sbjct: 156 SRLDLPRGMGLIVRTAGVGKSFEELEYDLKALLVHWDAIQTAAQSRK----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ ++DY + ++++D + + E ++++ PD +RV+LY +PLF
Sbjct: 206 LIHQESNVIFRAIRDYLRRDIGEILIDKAKVFEEAKAHIERFRPDFINRVKLYQGDVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL
Sbjct: 266 THYQIESQIESAFKREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++IAR+LRLRD+GG+IV+DFIDM ++R V +K AV DR+ V++ ++SR GL
Sbjct: 324 EAAEEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAVRTDRARVQIGKISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEIAKQY-FP 79
>gi|380302775|ref|ZP_09852468.1| ribonuclease, Rne/Rng family protein [Brachybacterium squillarum
M-6-3]
Length = 1061
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 183/309 (59%), Gaps = 11/309 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L ++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK
Sbjct: 548 LALKSGDSVLVQVTKDPIGHKGARLTSQISLPGRYVVFVPGGSMTGISRKLPDTERARLK 607
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + L PE G+ +RT A G S EEL D+E L + W I + KS
Sbjct: 608 KIMRQLIPEDAGVIVRTAAEGASEEELTHDVERLRAQWDKIQKSQKSKT----------A 657
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+ L + + +V+D FNE +VV Y V SY+ D+APDL +RV +
Sbjct: 658 PVALSQEPDLAIKVVRDVFNEDFTSLVVQGSEAYDAVHSYVSDVAPDLLERVTAHVGEKD 717
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F K+ I+E++ + ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 718 VFAKYRIDEQLLKAMDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGTLEETVTKN 776
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL +A++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++
Sbjct: 777 NLESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSL 836
Query: 589 GLMEITRKR 597
GL+++TRKR
Sbjct: 837 GLVQMTRKR 845
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLG 118
K ++I++ F++ + S+ +R IAVLED+ LVE + +VYLG
Sbjct: 444 KRNVITEAEFLARRESVKRSMIVRERSGRTQIAVLEDDVLVEHYVAQKSHTSMVGNVYLG 503
Query: 119 VVTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG R +++
Sbjct: 504 KVQNVLPSMEAAFVDIGKGRNAVL 527
>gi|345015145|ref|YP_004817499.1| Rne/Rng family ribonuclease [Streptomyces violaceusniger Tu 4113]
gi|344041494|gb|AEM87219.1| ribonuclease, Rne/Rng family [Streptomyces violaceusniger Tu 4113]
Length = 1362
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 187/307 (60%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 769 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 828
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL +D+ L + W+ I + +KS G P
Sbjct: 829 LKKIVPEDAGVIVRTAAEGASEDELSRDVARLQAQWEEIKKKSKS----------GNAPS 878
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ + + +F
Sbjct: 879 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLQRWTSDVDVF 938
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ IDVN G G G + E+ + NL
Sbjct: 939 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMIVIDVNTGK-FTGQGGNLEETVTRNNL 997
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 998 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1057
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1058 VQMTRKR 1064
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED+ LVE + ++ +VYLG V ++P+
Sbjct: 672 FLARREAVERVMVVRQNGDRTQ-IGVLEDDVLVEHFVNKEQATSYVGNVYLGKVQNVLPS 730
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 731 MEAAFVDIGKGRNAVL 746
>gi|411009295|ref|ZP_11385624.1| ribonuclease E [Aeromonas aquariorum AAK1]
Length = 1025
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 208/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 51 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 94
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 95 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 154
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL LL+ W +I H S + +A P+L+
Sbjct: 155 LTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQSRSA--------PVLI 204
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + S+++ + PD +RV+LY + LF+
Sbjct: 205 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKSHIELVRPDFLNRVKLYKGEVALFNH 264
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 265 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 322
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 323 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 382
Query: 593 ITRKR 597
++R+R
Sbjct: 383 MSRQR 387
>gi|406573818|ref|ZP_11049560.1| ribonuclease, Rne/Rng family protein [Janibacter hoylei PVAS-1]
gi|404556768|gb|EKA62228.1| ribonuclease, Rne/Rng family protein [Janibacter hoylei PVAS-1]
Length = 904
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 127/304 (41%), Positives = 184/304 (60%), Gaps = 3/304 (0%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I K
Sbjct: 362 GDSVLVQVTKDPVGHKGARLTSQISLPGRYVVYVPEGSMTGISRKLPDTERSRLKGILKQ 421
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ +RT A G S EL D+E L W I +K+ A +G G P+LLH
Sbjct: 422 VVPDSAGVIVRTAAEGASEAELTADVERLTKAWDKI--SSKAEAKKGKKGSAGGAPVLLH 479
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
T+ +++D FNE KMVV + E+ Y+ D+APDL DR+E Y +F
Sbjct: 480 AEPDMTVRVIRDIFNEDFAKMVVSGDDAWREIKGYVDDVAPDLSDRLEKYTGEGDVFAAH 539
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I+E I + ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 540 RIDEAIAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 598
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 599 EEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLLECLGRDRTKHQVAEVTSLGLVQM 658
Query: 594 TRKR 597
TRKR
Sbjct: 659 TRKR 662
>gi|407699819|ref|YP_006824606.1| RNase E [Alteromonas macleodii str. 'Black Sea 11']
gi|407248966|gb|AFT78151.1| RNase E [Alteromonas macleodii str. 'Black Sea 11']
Length = 1143
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 204/363 (56%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T P+G K + P K +++G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIARTYFPKGYK-FEGRPNIKDV--IKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK ++K
Sbjct: 100 VIVQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLD 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL+ LL+ W+ I A+ E P L+H+
Sbjct: 160 LPDGMGLIVRTAGVGKSYEELEWDLKVLLTHWEAISSVAE----------EREAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++D Y + ++Q + PD RV+LY +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFASRVKLYRGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|145632660|ref|ZP_01788394.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae 3655]
gi|145636318|ref|ZP_01791987.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittHH]
gi|144986855|gb|EDJ93407.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae 3655]
gi|145270483|gb|EDK10417.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittHH]
Length = 938
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 202/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|385331963|ref|YP_005885914.1| ribonuclease, Rne/Rng family [Marinobacter adhaerens HP15]
gi|311695113|gb|ADP97986.1| ribonuclease, Rne/Rng family [Marinobacter adhaerens HP15]
Length = 1074
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK
Sbjct: 92 VSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDERAQLKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 152 AMNDVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQFWEAITQAAG----------ERKA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ Y +V ++++ + P ++++LY IP
Sbjct: 202 PFLIHQESNVIIRAVRDYLRQDIGEVLIDANGVYEDVLNFVRAVMPTFENKIKLYKDEIP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 262 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGQDIEETALQT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IV+DFIDM ++R V +++++A+E DR+ V+V ++SR
Sbjct: 320 NLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALEIDRARVQVGKISRF 379
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 380 GLLEMSRQR 388
>gi|217973819|ref|YP_002358570.1| ribonuclease, Rne/Rng family [Shewanella baltica OS223]
gi|217498954|gb|ACK47147.1| ribonuclease, Rne/Rng family [Shewanella baltica OS223]
Length = 1154
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++ V+GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQ---------VKGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 400 GLMEMSRQR 408
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|91775674|ref|YP_545430.1| ribonuclease E [Methylobacillus flagellatus KT]
gi|91709661|gb|ABE49589.1| RNAse E [Methylobacillus flagellatus KT]
Length = 904
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 185/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV K+ G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 94 LKEGQELIVQVDKDERGNKGAALTTFVSLAGRYLVLMPNNPRGGGVSRRIEGEERNELRD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P G + RT G S+EELQ DL LL W + +A G
Sbjct: 154 TMAQLQVPSGMSIIARTAGIGRSVEELQWDLNYLLQLWTAV-----ESASTIQSG----- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DYF + ++++D+P Y + ++ + P+ RV+LY IP
Sbjct: 204 PFLIYQEGSLVIRAIRDYFQPDIGEILIDTPDIYEQAVQFMNHVMPNNVSRVKLYRDEIP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I + ++ V LP+GG++VI+ TEALVS+DVN G GS E+ +
Sbjct: 264 LFSRFQIEHQIESAFAREVRLPSGGAIVIDHTEALVSVDVNSGRST--KGSDIEQTAFNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG++V+DFIDM + N+R V +++A+ DR+ V+ ++SR
Sbjct: 322 NLEAADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRLREALHHDRARVQTGKISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLELSRQR 390
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P++ AFVN G
Sbjct: 4 MLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGVITRIEPSLEAAFVNYGTD 63
Query: 138 RPSLMDIKHYREPFIF 153
R + K +
Sbjct: 64 RHGFLPFKEIARSYFL 79
>gi|229820110|ref|YP_002881636.1| ribonuclease, Rne/Rng family [Beutenbergia cavernae DSM 12333]
gi|229566023|gb|ACQ79874.1| ribonuclease, Rne/Rng family [Beutenbergia cavernae DSM 12333]
Length = 944
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 183/307 (59%), Gaps = 1/307 (0%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
+ G V+VQV K+ +G KG LT+ L R+ +L+ S G+SRK+ ER RLK +
Sbjct: 462 LSSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPSGAMTGISRKLPDTERARLKKL 521
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P+G G+ +RT A G S +EL++D+E L W +I + + + P
Sbjct: 522 LKEIVPDGQGVIVRTAAEGASEDELRRDVERLTKQWADIQTKVNGSGGTGRKPQKVTAPA 581
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL L +V+D FNE + V +H ++ YL +APDL R+ + +F
Sbjct: 582 LLKGEPELALRVVRDVFNEDFSSLTVSGDEAWHTISDYLTTVAPDLAQRLTHWTDDADVF 641
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+F I+E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 642 ARFRIDEQLAKGLDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGTLEETVTRNNL 700
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 701 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTRHQVAEVTSLGL 760
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 761 VQMTRKR 767
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
++I++ F++ + ++ +R IAVLED LVE + + + +VYLG V
Sbjct: 358 TIITEAEFLARREAVERAMVVRERDGRTQIAVLEDGVLVEHYVARKQQSSMVGNVYLGRV 417
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV++G R +++
Sbjct: 418 QNVLPSMEAAFVDLGKGRNAVL 439
>gi|145630414|ref|ZP_01786195.1| hydroxyethylthiazole kinase [Haemophilus influenzae R3021]
gi|145638676|ref|ZP_01794285.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittII]
gi|144984149|gb|EDJ91586.1| hydroxyethylthiazole kinase [Haemophilus influenzae R3021]
gi|145272271|gb|EDK12179.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittII]
gi|309750169|gb|ADO80153.1| Ribonuclease E [Haemophilus influenzae R2866]
Length = 938
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 202/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|423196669|ref|ZP_17183252.1| rne/Rng family ribonuclease [Aeromonas hydrophila SSU]
gi|404632123|gb|EKB28752.1| rne/Rng family ribonuclease [Aeromonas hydrophila SSU]
Length = 1044
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 208/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL LL+ W +I H S + +A P+L+
Sbjct: 158 LTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQSRSA--------PVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + S+++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKSHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|373949092|ref|ZP_09609053.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183]
gi|386325070|ref|YP_006021187.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175]
gi|333819215|gb|AEG11881.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175]
gi|373885692|gb|EHQ14584.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183]
Length = 1149
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++ V+GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQ---------VKGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 400 GLMEMSRQR 408
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|229844425|ref|ZP_04464565.1| ribonuclease E [Haemophilus influenzae 6P18H1]
gi|229812674|gb|EEP48363.1| ribonuclease E [Haemophilus influenzae 6P18H1]
Length = 938
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 202/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|308177601|ref|YP_003917007.1| ribonuclease [Arthrobacter arilaitensis Re117]
gi|307745064|emb|CBT76036.1| putative ribonuclease [Arthrobacter arilaitensis Re117]
Length = 946
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 184/307 (59%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER RLK I
Sbjct: 333 LKAGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDVERQRLKKI 392
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K PE G+ +RT A G S EEL D+ L + W+ I E A S A P
Sbjct: 393 LKDHLPENAGVIVRTAAEGASEEELTNDINRLRAQWEGIEEQANSTKTLA--------PE 444
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + +Y+ +APDL R+E ++ +F
Sbjct: 445 LLYSEPDLTIKVVRDVFNEDFTKLIVSGEHAWDTIEAYVMYVAPDLMGRLEKWEAEEDIF 504
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
F ++E+I L ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL
Sbjct: 505 TNFRVDEQIAKALDRKVFLPSGGSLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTKNNL 563
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA+++ R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 564 EAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGL 623
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 624 IQMTRKR 630
>gi|416053284|ref|ZP_11578782.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347991209|gb|EGY32702.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 963
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 187/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L P+G GL +RT G + EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPDGVGLIVRTAGVGKTPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +R++LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPQVYEKAKAHIKLVRPDFINRMKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|262167653|ref|ZP_06035356.1| ribonuclease E [Vibrio cholerae RC27]
gi|262023858|gb|EEY42556.1| ribonuclease E [Vibrio cholerae RC27]
Length = 1049
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LTA+ L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTAFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|119775124|ref|YP_927864.1| ribonuclease E [Shewanella amazonensis SB2B]
gi|119767624|gb|ABM00195.1| RNAse E [Shewanella amazonensis SB2B]
Length = 1141
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 181/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 121 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 180
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G ELQ DL+ LL W I E ++S G
Sbjct: 181 AMADLEVPNGMGLIVRTAGVGKDAAELQWDLKVLLRHWDAIKEASES----------GPG 230
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ + ++DY V ++++D P+ + + ++ + PD +RV+ Y +P
Sbjct: 231 PMLIHQESNVIVRAIRDYLRRDVGEILIDHPKIFEQAKQHIATVRPDFVERVKQYKAEVP 290
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEA+ SID+N G E+ L+
Sbjct: 291 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEAMTSIDINSARAT--KGGDIEETALNT 348
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ V++ +SR
Sbjct: 349 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVHQDRARVQLGRISRF 408
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 409 GLMEMSRQR 417
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 21 LKKNDVTMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSL 80
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 81 EAAFVDYGAERHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 120
>gi|256821862|ref|YP_003145825.1| Rne/Rng family ribonuclease [Kangiella koreensis DSM 16069]
gi|256795401|gb|ACV26057.1| ribonuclease, Rne/Rng family [Kangiella koreensis DSM 16069]
Length = 498
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 195/310 (62%), Gaps = 14/310 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLK- 348
+ +G K+IVQV+K+ +G+KG LT + + SRF +L+ +GVS++I + ERTRLK
Sbjct: 105 LHEGQKIIVQVIKDPIGSKGARLTTHITIPSRFLVLMPDNPHVGVSQRIEDLDERTRLKD 164
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++A T G IRT A G S EL +D++ L W I E AK+
Sbjct: 165 LLADTDFGGDTGYIIRTAAEGASDIELDRDVKFLSKLWSGISEKAKTTK----------A 214
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H + L I++D + ++++ +D+ +++ + +++ + P++ +R+E Y+ P
Sbjct: 215 PQLVHEDLALELRIMRDIIEDDIERVRMDNSQSFKRIQNFVMEFLPEINNRIEHYEGERP 274
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+FD +NIEEEI L ++VPL +GG L+I+QTEA+ ++DVN G GH + E+ I
Sbjct: 275 IFDLYNIEEEIKKALERKVPLKSGGYLIIDQTEAMTTVDVNTG-AFIGH-KNLEETIFRT 332
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +AR+LRLR++GGII+VDFIDM D+ +KR V ++KAVERD +SE+S
Sbjct: 333 NLEAATALARQLRLRNLGGIIIVDFIDMQDEEHKRHVLRTLEKAVERDHVKTSISEVSTL 392
Query: 589 GLMEITRKRA 598
GL+E+TRKR+
Sbjct: 393 GLVEMTRKRS 402
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDI 144
R+A++E+ L E+ LE + ++Y G+V +++P M AFV+IG+ R + + +
Sbjct: 15 RVALVENGVLQEVHLERTTNRGIVGNIYKGIVRRVMPGMQAAFVDIGHDRAAFLHV 70
>gi|227118477|ref|YP_002820373.1| ribonuclease E [Vibrio cholerae O395]
gi|227013927|gb|ACP10137.1| ribonuclease E [Vibrio cholerae O395]
Length = 1052
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LTA+ L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTAFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|160874865|ref|YP_001554181.1| ribonuclease [Shewanella baltica OS195]
gi|378708112|ref|YP_005273006.1| ribonuclease, Rne/Rng family [Shewanella baltica OS678]
gi|418026180|ref|ZP_12665152.1| ribonuclease, Rne/Rng family [Shewanella baltica OS625]
gi|160860387|gb|ABX48921.1| ribonuclease, Rne/Rng family [Shewanella baltica OS195]
gi|315267101|gb|ADT93954.1| ribonuclease, Rne/Rng family [Shewanella baltica OS678]
gi|353534501|gb|EHC04071.1| ribonuclease, Rne/Rng family [Shewanella baltica OS625]
Length = 1158
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++ V+GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQ---------VKGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 400 GLMEMSRQR 408
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|126173939|ref|YP_001050088.1| ribonuclease [Shewanella baltica OS155]
gi|386340698|ref|YP_006037064.1| ribonuclease, Rne/Rng family [Shewanella baltica OS117]
gi|125997144|gb|ABN61219.1| RNAse E [Shewanella baltica OS155]
gi|334863099|gb|AEH13570.1| ribonuclease, Rne/Rng family [Shewanella baltica OS117]
Length = 1144
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++ V+GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQ---------VKGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 400 GLMEMSRQR 408
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|386265192|ref|YP_005828684.1| Ribonuclease E [Haemophilus influenzae R2846]
gi|309972428|gb|ADO95629.1| Ribonuclease E [Haemophilus influenzae R2846]
Length = 935
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 202/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|319775659|ref|YP_004138147.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3047]
gi|317450250|emb|CBY86466.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3047]
Length = 932
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 202/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 93 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 153 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 203 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 380
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 381 LEMSRQR 387
>gi|444345906|ref|ZP_21153909.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|443542330|gb|ELT52673.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
Length = 963
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|402756740|ref|ZP_10858996.1| ribonuclease E [Acinetobacter sp. NCTC 7422]
Length = 1137
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 112 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 172 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGSASS----------GPS 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 222 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 282 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 340 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 399
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 400 GLMEMSRQR 408
>gi|82702193|ref|YP_411759.1| ribonuclease [Nitrosospira multiformis ATCC 25196]
gi|82410258|gb|ABB74367.1| RNAse E [Nitrosospira multiformis ATCC 25196]
Length = 977
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 140/398 (35%), Positives = 215/398 (54%), Gaps = 50/398 (12%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSK------- 261
D D+ K N+ ++I EP EA F ++ GE +GF P K
Sbjct: 26 DLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEY-------GGERHGFLPFKEISRSYL 78
Query: 262 SEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRS 321
E PD +D+ H +G ++IVQV K+ GTKG LT Y L
Sbjct: 79 KESPDPGRVR----VQDALH-----------EGQELIVQVDKDERGTKGAALTTYISLAG 123
Query: 322 RFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDL 379
R+ +L+ + R G VSR+I G +R L+ + L P+G + RT G + EELQ DL
Sbjct: 124 RYLVLMPNNPRGGGVSRRIEGEDRAELRDVMSHLNIPQGMSIIARTAGIGRTEEELQWDL 183
Query: 380 EGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSP 439
LL W+ I + +K G GA L+++ + ++DYFN+++ ++++D+
Sbjct: 184 NYLLQLWRAIEDASK--------GQSGA--FLIYQESSLVIRAIRDYFNQEIGEILIDTE 233
Query: 440 RTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQ 499
Y + ++ + P RV+LY +PLF +F IE +I S++V LP+GG++VI+
Sbjct: 234 SIYEQACQFMGHVMPGNVARVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDH 293
Query: 500 TEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADD 559
TEALVS+DVN GS E+ L NL AA +IAR+LRLRD+GG++V+DFIDM
Sbjct: 294 TEALVSVDVNSARAT--RGSDIEQTALATNLEAADEIARQLRLRDLGGLVVIDFIDMEVS 351
Query: 560 SNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
N+R V + A+ DR+ V++ ++SR GL+E++R+R
Sbjct: 352 RNQREVENRLHDALRYDRARVQMGKISRFGLLELSRQR 389
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T+L P++ AFV G
Sbjct: 4 MLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEYGGE 63
Query: 138 RPSLMDIKHYREPFI 152
R + K ++
Sbjct: 64 RHGFLPFKEISRSYL 78
>gi|340621043|ref|YP_004739494.1| cytoplasmic axial filament protein [Capnocytophaga canimorsus Cc5]
gi|339901308|gb|AEK22387.1| Cytoplasmic axial filament protein [Capnocytophaga canimorsus Cc5]
Length = 529
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 192/316 (60%), Gaps = 14/316 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQ 355
++VQ+VKE + TKGP +++ + R+ +L+ DRI +S+KI + E+ RLK + ++++
Sbjct: 138 ILVQIVKEPISTKGPRISSELSIAGRYLVLVPFSDRISISQKIESKAEKERLKRLLQSIK 197
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFG+ +RTVA G + EL KDL+GL + W L + + P +
Sbjct: 198 PKGFGVIVRTVAEGKKVAELDKDLQGLFNRW----------VLMCKKIHKAVFPSKVLSE 247
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
+ +T +I++D FN+ + VD Y ++ Y+++IAPD V+ Y IP+F++FNI
Sbjct: 248 VNRTGAILRDLFNDSFSGIHVDDQALYEQIVKYVREIAPDKEKIVKHYRSSIPIFERFNI 307
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V + G LVIE TEAL IDVN G+ +++E L VNL AA +
Sbjct: 308 ERQIKTAFGRTVSMSKGAYLVIEHTEALHVIDVNSGNHS-NKANNQENTALAVNLIAATE 366
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
IAR+LRLRD+GGIIVVDFIDM+D N++ +++ +KK + DR+ K+ S+ GL++ITR
Sbjct: 367 IARQLRLRDMGGIIVVDFIDMSDTENRKTLFDHLKKEMAEDRAKHKILPPSKFGLIQITR 426
Query: 596 KRAMMEQ--KADPENP 609
+R E K ENP
Sbjct: 427 QRVRPELNIKTLEENP 442
>gi|153000232|ref|YP_001365913.1| ribonuclease [Shewanella baltica OS185]
gi|151364850|gb|ABS07850.1| ribonuclease, Rne/Rng family [Shewanella baltica OS185]
Length = 1148
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++ V+GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQ---------VKGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 400 GLMEMSRQR 408
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|291451299|ref|ZP_06590689.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354248|gb|EFE81150.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 982
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 187/307 (60%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 520 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKGI 579
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L W+ I + A ++ ++ P
Sbjct: 580 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLHGQWQEIQKKANASNASS--------PS 631
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + V Y+ +APDL DR++ + +F
Sbjct: 632 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTVHGYVSKVAPDLVDRLQRWTSETDVF 691
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E + L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 692 ATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 750
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 751 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 810
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 811 VQMTRKR 817
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED+ LVE + ++ +VYLG V ++P+
Sbjct: 423 FLARREAVERVMVVRQSGERTQ-IGVLEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 481
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 482 MEAAFIDIGKGRNAVL 497
>gi|416076877|ref|ZP_11585717.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|348004378|gb|EGY44890.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
Length = 963
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|416892567|ref|ZP_11923891.1| ribonuclease E [Aggregatibacter aphrophilus ATCC 33389]
gi|347814265|gb|EGY30914.1| ribonuclease E [Aggregatibacter aphrophilus ATCC 33389]
Length = 959
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + D +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRLDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|262375075|ref|ZP_06068309.1| ribonuclease E(RNase E) [Acinetobacter lwoffii SH145]
gi|262310088|gb|EEY91217.1| ribonuclease E(RNase E) [Acinetobacter lwoffii SH145]
Length = 1159
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 217/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ + P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 YKADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK + TL P G + +RT G S EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEMLATLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQSTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N G E L+ NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V
Sbjct: 300 DINSAKST--RGQDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|421741457|ref|ZP_16179652.1| ribonuclease, Rne/Rng family, partial [Streptomyces sp. SM8]
gi|406690132|gb|EKC93958.1| ribonuclease, Rne/Rng family, partial [Streptomyces sp. SM8]
Length = 856
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 187/307 (60%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 460 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKGI 519
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L W+ I + A ++ ++ P
Sbjct: 520 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLHGQWQEIQKKANASNASS--------PS 571
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + V Y+ +APDL DR++ + +F
Sbjct: 572 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTVHGYVSKVAPDLVDRLQRWTSETDVF 631
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E + L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 632 ATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 690
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 691 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 750
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 751 VQMTRKR 757
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED+ LVE + ++ +VYLG V ++P+
Sbjct: 363 FLARREAVERVMVVRQSGERTQ-IGVLEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 421
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 422 MEAAFIDIGKGRNAVL 437
>gi|415720301|ref|ZP_11467837.1| ribonuclease G [Gardnerella vaginalis 00703Bmash]
gi|388061800|gb|EIK84437.1| ribonuclease G [Gardnerella vaginalis 00703Bmash]
Length = 1138
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 191/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 661 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 720
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W I AK E + G
Sbjct: 721 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWDRI--EAKRQ-----EFLHGKR 773
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 774 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 833
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 834 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 892
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 893 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 952
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 953 VTSLGLVQMTRKR 965
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 560 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 617
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 618 VQNVLPSMEAAFVDIGQARNGVL 640
>gi|386774788|ref|ZP_10097166.1| ribonuclease, Rne/Rng family protein, partial [Brachybacterium
paraconglomeratum LC44]
Length = 835
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 188/309 (60%), Gaps = 11/309 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L ++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK
Sbjct: 412 LALKSGDPVLVQVTKDPIGHKGARLTSQISLPGRYVVFVPGGSMTGISRKLPDTERNRLK 471
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + + PE G+ +RT A G S EEL +D+E L + W+ I + KS +
Sbjct: 472 KIMRQIIPEDAGVIVRTAAEGASEEELTRDVERLTAQWEKIQKSQKSRS----------A 521
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+ L + + +V+D FNE ++V+ + Y +V SY+ ++APDL +RV +
Sbjct: 522 PVALSQEPDIAIKVVRDVFNEDFTSLIVEGGKVYDDVHSYVSEVAPDLLERVTRHVGEKD 581
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F K I+E++ + ++V LP+GGSLVI++TEA+ +DVN G G G S E+ +
Sbjct: 582 VFAKHRIDEQLLKAMDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGSLEETVTKN 640
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRDIGGIIV+DFIDM ++N+ LV + + + RDR+ +V+E++
Sbjct: 641 NLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVECLGRDRTKHQVAEVTSL 700
Query: 589 GLMEITRKR 597
GL+++TRKR
Sbjct: 701 GLVQMTRKR 709
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
S+I++ F++ + S+ +R IAVLED+ LVE + +VY+G V
Sbjct: 310 SVITEAEFLARRESVKRSMVVRERQGSTQIAVLEDDVLVEHYVAQKSQTSMVGNVYVGKV 369
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 370 QNVLPSMEAAFVDIGKGRNAVL 391
>gi|262404384|ref|ZP_06080939.1| ribonuclease E [Vibrio sp. RC586]
gi|262349416|gb|EEY98554.1| ribonuclease E [Vibrio sp. RC586]
Length = 1024
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 208/394 (52%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 385 RQRL---------SPS-----LAEASHHICPRCT 404
>gi|260912695|ref|ZP_05919181.1| ribonuclease E [Pasteurella dagmatis ATCC 43325]
gi|260633073|gb|EEX51238.1| ribonuclease E [Pasteurella dagmatis ATCC 43325]
Length = 986
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 209/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DS + Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSQKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +++S +SR GL+E++R+R
Sbjct: 370 RARIQISRISRFGLLEMSRQR 390
>gi|444333600|ref|ZP_21149363.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
gi|443551496|gb|ELT59337.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
Length = 821
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 81 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 140
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 141 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 190
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 191 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 250
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 251 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 308
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 309 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 368
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 369 GLLEMSRQR 377
>gi|424033464|ref|ZP_17772878.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HENC-01]
gi|408874713|gb|EKM13881.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HENC-01]
Length = 1025
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD RV+ Y+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIKLVRPDFISRVKKYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|415724342|ref|ZP_11469830.1| ribonuclease G [Gardnerella vaginalis 00703C2mash]
gi|388062498|gb|EIK85107.1| ribonuclease G [Gardnerella vaginalis 00703C2mash]
Length = 1129
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 191/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 652 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 711
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W I AK E + G
Sbjct: 712 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWDRI--EAKRQ-----EFLHGKR 764
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 765 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 824
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 825 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 883
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 884 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 943
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 944 VTSLGLVQMTRKR 956
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 551 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 608
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 609 VQNVLPSMEAAFVDIGQARNGVL 631
>gi|390942749|ref|YP_006406510.1| ribonuclease, Rne/Rng family [Belliella baltica DSM 15883]
gi|390416177|gb|AFL83755.1| ribonuclease, Rne/Rng family [Belliella baltica DSM 15883]
Length = 523
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 186/307 (60%), Gaps = 12/307 (3%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIA 351
K +++VQVVKE + TKGP L+ + R+ +L+ + + VS+KI + ER RL +
Sbjct: 118 KNNQILVQVVKEPISTKGPRLSCELSIAGRYLVLVPFSNTVNVSKKIRSAEERRRLVRLI 177
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
+++P FG+ IRTVA G S+ EL KDL L+STW++ M+ A + V G
Sbjct: 178 TSIKPANFGVIIRTVAEGQSVTELDKDLRNLVSTWEDGMKKLPKAK--PKDKVIGE---- 231
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
M SI++D NE + V+ Y ++ SY++ IAP+ V+LY+ + LF+
Sbjct: 232 ----MSMASSIIRDLLNESFDAITVEDELIYDQIRSYIRSIAPEKERIVKLYNGKAKLFE 287
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F IE++I ++ + + LP GG ++IE TEAL IDVN G+ S +E L NLA
Sbjct: 288 SFGIEKQIKSLFGQTISLPQGGYVIIEHTEALHVIDVNSGNKS-NQESDQETTALKTNLA 346
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AAK+IAR+LRLRD+GGIIV+DFIDM NK+ +Y+ +K ++ DRS V L++ GLM
Sbjct: 347 AAKEIARQLRLRDMGGIIVIDFIDMKKADNKKAIYDAMKDEMKDDRSKNTVLPLTKFGLM 406
Query: 592 EITRKRA 598
+ITR+R
Sbjct: 407 QITRQRV 413
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST ++I+S+ + RIA+L+++ LVEL + + + +YLG V K+V + AF++
Sbjct: 1 MSTELVIDSA-QSGSRIALLKEKSLVELHSDGEDNQFKVGDIYLGTVRKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYRE 149
+G + + + HY++
Sbjct: 60 VGYEKDAFL---HYQD 72
>gi|425746014|ref|ZP_18864046.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-323]
gi|425486663|gb|EKU53028.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-323]
Length = 1120
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGSASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTMNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|119717674|ref|YP_924639.1| ribonuclease G [Nocardioides sp. JS614]
gi|119538335|gb|ABL82952.1| RNAse G [Nocardioides sp. JS614]
Length = 1070
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 186/311 (59%), Gaps = 19/311 (6%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ERTRLK + K
Sbjct: 487 GQSVLVQVTKDPIGHKGARLTSQISLAGRFLVYVPDGTTSGISRKLPDTERTRLKALLKE 546
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ +RT A G S EEL +D+E L + W++I AK G+ P LL+
Sbjct: 547 IVPDSAGVIVRTAAEGASEEELTRDVERLKARWEDIEGKAK-----------GSAPQLLY 595
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDK-------R 466
TL +V+D F E K+V+ + V Y+ +APDL R+E YD +
Sbjct: 596 GEPDLTLKVVRDLFTEDFSKLVIQGEDAWDTVQGYVHHVAPDLEARLERYDPGADGAGGK 655
Query: 467 IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
+F ++ I+E+I L ++V LP+GGSL+I++TEA+ +DVN G G G + E+ +
Sbjct: 656 ADVFAEYRIDEQIAKGLDRKVWLPSGGSLIIDRTEAMTVVDVNTGK-FTGSGGNLEETVT 714
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++
Sbjct: 715 KNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTRHQVAEVT 774
Query: 587 RHGLMEITRKR 597
GL+++TRKR
Sbjct: 775 SLGLVQMTRKR 785
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR I VLED LVE + +VYLG V
Sbjct: 380 IVSEAEFLARRESVDRVMVVRQREDLTQIGVLEDRVLVEHYVARESQTSLIGNVYLGRVQ 439
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AF++IG R +++
Sbjct: 440 NVLPSMEAAFIDIGKGRNAVL 460
>gi|261868549|ref|YP_003256471.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413881|gb|ACX83252.1| ribonuclease E (RNase E) [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 960
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|261209962|ref|ZP_05924261.1| ribonuclease E [Vibrio sp. RC341]
gi|260840908|gb|EEX67445.1| ribonuclease E [Vibrio sp. RC341]
Length = 1030
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 208/394 (52%), Gaps = 42/394 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
R+R +P + HH+C T
Sbjct: 385 RQRL---------SPS-----LAEASHHICPRCT 404
>gi|147674453|ref|YP_001217556.1| ribonuclease E [Vibrio cholerae O395]
gi|146316336|gb|ABQ20875.1| ribonuclease E [Vibrio cholerae O395]
Length = 688
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LTA+ L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTAFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|416104397|ref|ZP_11589866.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|348007333|gb|EGY47650.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
Length = 831
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|410446565|ref|ZP_11300668.1| ribonuclease E/G family protein [SAR86 cluster bacterium SAR86E]
gi|409980237|gb|EKO36988.1| ribonuclease E/G family protein [SAR86 cluster bacterium SAR86E]
Length = 690
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 201/351 (57%), Gaps = 25/351 (7%)
Query: 249 HLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGT 308
+ E +GF P K E+ D T +G K + +G +++VQV+KE GT
Sbjct: 59 NFGSEKHGFLPLK-ELSSDYFTKDAEGKKKC----------TLNEGDEILVQVLKEERGT 107
Query: 309 KGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTV 366
KG L+ L RF +LI + ++ G VSR+I+G ER +K LQ PEG + +RT
Sbjct: 108 KGAALSNQISLAGRFIVLIPNSEKSGGVSRRISGDERDDIKNALNALQIPEGMSVIVRTA 167
Query: 367 AAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDY 426
G S EEL+ DL+ L++ W+ I A P L+++ L + +DY
Sbjct: 168 GLGRSTEELKWDLDYLMNLWEQIKSTLSDAP----------SPSLIYKDDKLILRVFRDY 217
Query: 427 FNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKR 486
F + ++++++D + E + + + PD D+V Y++ IPLF+++ IE +I +
Sbjct: 218 FRDDIEEILIDDEAIHAEALDFAKSVIPDHADKVIFYNEEIPLFNRYQIESQIELAFQRE 277
Query: 487 VPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIG 546
V LP+GGS+VI+ TEA+VSIDVN G E N+ AAK++AR+LRLRD+G
Sbjct: 278 VSLPSGGSIVIDPTEAMVSIDVNSARST--KGKDIESTAFATNMEAAKEVARQLRLRDLG 335
Query: 547 GIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
G+IV+DFIDM D+ +++ V + +V+ DR+ ++++ +SR GL+E++R+R
Sbjct: 336 GLIVIDFIDMQDEKHQQKVENTFRSSVQSDRARIQIAAISRFGLLELSRQR 386
>gi|343084440|ref|YP_004773735.1| Rne/Rng family ribonuclease [Cyclobacterium marinum DSM 745]
gi|342352974|gb|AEL25504.1| ribonuclease, Rne/Rng family [Cyclobacterium marinum DSM 745]
Length = 523
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 184/309 (59%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
+ K +V+VQVVKE + TKGP L+ L R+ +L+ + + VS+KI ER RL
Sbjct: 116 LSKNNQVLVQVVKEPISTKGPRLSCELSLAGRYLVLVPFSNTVNVSKKIRSADERKRLSR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P FG+ IRTVA G S+ EL KDL LL TW++ M + A + + + G
Sbjct: 176 LITSIKPVNFGVIIRTVAEGQSVTELDKDLRNLLETWEDGMRKLQKAKVK--DKIIGE-- 231
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
M SI++D NE + V+ Y ++ SY++ IAP+ V+LY+ + L
Sbjct: 232 ------MSLASSIIRDLLNESFDAITVEDEVIYDQMRSYIRSIAPEKEKIVKLYNGKAKL 285
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+ F IE++I ++ V LP GG L+IE TEAL +DVN G+ S +E L N
Sbjct: 286 FESFGIEKQIKSLFGTTVSLPQGGYLIIEHTEALHVVDVNSGNKS-NQESDQENTGLKTN 344
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
+ A K+IAR+LRLRD+GGIIV+DFIDM NK+ ++E +K+A+ DRS V L++ G
Sbjct: 345 MVAVKEIARQLRLRDMGGIIVIDFIDMKKAENKKAIFEAMKEAMREDRSKNTVLPLTKFG 404
Query: 590 LMEITRKRA 598
LM+ITR+R
Sbjct: 405 LMQITRQRV 413
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S+ +LI+SS RIA+L+++ L+EL +E + + +YLG V K+V + AF++
Sbjct: 1 MSSELLIDSS-QNGSRIALLKNKSLIELHVEEEDNKFKVGDIYLGAVKKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYRE 149
+G + + + HY++
Sbjct: 60 VGYEKDAFL---HYQD 72
>gi|424865929|ref|ZP_18289785.1| ribonuclease E [SAR86 cluster bacterium SAR86B]
gi|400758502|gb|EJP72709.1| ribonuclease E [SAR86 cluster bacterium SAR86B]
Length = 688
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/380 (34%), Positives = 215/380 (56%), Gaps = 33/380 (8%)
Query: 249 HLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGT 308
+ E +GF P K ++ ++ +H G+K + +++G +++VQV KE GT
Sbjct: 59 NFGSERHGFLPLK-DLSNEYFETHK----------GKKKCI-LEEGQEIVVQVTKEERGT 106
Query: 309 KGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTV 366
KG L+ L RF +L+ + R G +SR+I+G ER +K L PE + +RT
Sbjct: 107 KGAALSTQIGLAGRFLVLMPNSSRSGGISRRISGDERDEIKKSLDKLNIPESMSVIVRTN 166
Query: 367 AAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDY 426
G S EEL DL LL+ W + +A P L+++ + +V+DY
Sbjct: 167 GLGRSTEELSLDLNYLLALWDEVCISTPNAK----------APSLIYKDDKLIVRVVRDY 216
Query: 427 FNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKR 486
F E +++++VD TY E ++Q + PD ++++ Y++ IPLF+++ IE +I +
Sbjct: 217 FKEDIEEILVDDKDTYDEALKFMQAVIPDHAEKIKFYNEDIPLFNRYQIESQIELAFQRE 276
Query: 487 VPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIG 546
+ L +GGS+VI+ TEA+ +IDVN G E+ N+ AAK++AR+LRLRD+G
Sbjct: 277 ISLNSGGSIVIDPTEAMTAIDVNSARST--KGKDIEETAFKTNIEAAKEVARQLRLRDVG 334
Query: 547 GIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRK--RAMMEQKA 604
G++V+DFIDM D+SN+ V +KAV DR+ V+VS +SR GL+E++R+ R + +
Sbjct: 335 GLVVIDFIDMLDESNQNKVESAFRKAVYSDRARVQVSSISRFGLLEVSRQRLRPSLNETY 394
Query: 605 DPEN-----PKSWPRFILRV 619
D E+ P+S + ILR+
Sbjct: 395 DIEHVLVRGPRSLGQSILRI 414
>gi|415768138|ref|ZP_11483477.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D17P-2]
gi|348658092|gb|EGY75668.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D17P-2]
Length = 834
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|358445548|ref|ZP_09156148.1| putative ribonuclease [Corynebacterium casei UCMA 3821]
gi|356608503|emb|CCE54412.1| putative ribonuclease [Corynebacterium casei UCMA 3821]
Length = 1394
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 194/331 (58%), Gaps = 23/331 (6%)
Query: 284 GEKTWLQ-------------VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSC 330
GE W Q ++ G +V+VQV K+ +G KGP LT L RF + +
Sbjct: 560 GEVNWRQAGLGGRSRKIEQAMKSGDQVLVQVAKDPVGHKGPRLTTQISLPGRFLVYVPGG 619
Query: 331 DRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIM 390
G+SRK+ ER RL+ I + + P+ G IRT A + E + D+ L W +I
Sbjct: 620 RNAGISRKLPAPERKRLREILEKVVPDQGGAIIRTAAENVAEEAIAADVNRLHDRWNDIQ 679
Query: 391 EHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQ 450
E AK ++ +G+ P+ L+ + +V+D FNE ++VVD R + V+SY+
Sbjct: 680 ESAKK-----EKSSKGSDPVALYEEPQMLVKVVRDLFNEDFDRLVVDGERPFEVVSSYVN 734
Query: 451 DIAPDLCDRVELYDKR----IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+AP+L DRV YD+ + F+ + I+E++ LS++V LP+GG+LVI++TEA+ I
Sbjct: 735 RLAPELADRVFKYDRSENGGVDAFETYRIDEQLQKALSRKVWLPSGGTLVIDRTEAMTVI 794
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G G + E+ + NL AA+++ R++RLRD+GG+IVVDFIDM N+ LV
Sbjct: 795 DVNTGK-FTGTGGNLEETVTKNNLEAAEEVVRQMRLRDLGGMIVVDFIDMVLPENQELVL 853
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+K+A+ RDR+ +VSE++ GL+++TRKR
Sbjct: 854 RRLKEALGRDRTRHQVSEVTSLGLVQMTRKR 884
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 86 TMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
T+ ++ VLED LVE + + ++YLG V ++P+M AF++IG R ++
Sbjct: 501 TITQVGVLEDGMLVEHFVTDETNTSSIGNIYLGRVQNVLPSMEAAFIDIGTGRNGVL 557
>gi|157962325|ref|YP_001502359.1| ribonuclease [Shewanella pealeana ATCC 700345]
gi|157847325|gb|ABV87824.1| ribonuclease, Rne/Rng family [Shewanella pealeana ATCC 700345]
Length = 1084
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 181/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVIIQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G EL+ DL+ L W I E A+ A
Sbjct: 154 ALAELEVPQGMGLIVRTAGVGKDPAELKWDLKVLQHHWAAIKEAAEGAP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y + ++ + PD +R++ YD +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVRPDFVERIKRYDAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V + ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|365966301|ref|YP_004947863.1| LOW QUALITY PROTEIN: ribonuclease E [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|365745214|gb|AEW76119.1| LOW QUALITY PROTEIN: ribonuclease E [Aggregatibacter
actinomycetemcomitans ANH9381]
Length = 959
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|319408602|emb|CBI82257.1| ribonuclease E [Bartonella schoenbuchensis R1]
Length = 864
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 174/599 (29%), Positives = 290/599 (48%), Gaps = 64/599 (10%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A EE A +N + +D+
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL--------ALLEEEEKAAIDENQA-----DDLV 107
Query: 194 EADSQDDLVQFEHNDDEEH-----DGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDH 248
E Q+ + + H D ++ +SE + + DDGE D + + D
Sbjct: 108 EEIKQNKKGSRKTKKSKNHSTLSVDNENNIISESIAS------DDGEEALDG-NVCDDDI 160
Query: 249 HLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGT 308
+ G + E+P T K K +++ ++VQV+KE G
Sbjct: 161 EMVGAEDAL----EELP----------TYQRKPVRQYKIQEVIKRRQILLVQVIKEERGN 206
Query: 309 KGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRT 365
KG LT Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT
Sbjct: 207 KGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRT 266
Query: 366 VAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQD 425
A + E+++D E L+ W+ + ++ L + P L++ ++D
Sbjct: 267 AGANRTKVEIKRDYEYLMRLWETV----RTLTLKS------TAPYLVYEEGNLIKRSIRD 316
Query: 426 YFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSK 485
+N+ + +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML
Sbjct: 317 LYNKDINEILVSGDKGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNNIEAQLDKMLQS 376
Query: 486 RVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDI 545
+V L +GG LVI QTEALV+IDVN G H S EK L NL AA++IAR+LRLRD+
Sbjct: 377 KVALKSGGYLVINQTEALVAIDVNSGRSTKEH--SVEKTALQTNLEAAEEIARQLRLRDL 434
Query: 546 GGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR---AMMEQ 602
G+IV+DFIDM ++ N +LV +++K ++ DR+ ++V +S GLME++R+R +++E
Sbjct: 435 AGLIVIDFIDMLENRNIKLVEKKLKDCLKNDRARIQVGRISHFGLMEMSRQRIRVSVLES 494
Query: 603 KADP-------ENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGF 654
P N +S L V + YL S + + V +S++ A +L R
Sbjct: 495 TMQPCPHCAGTGNVRSESSIALHVMRSIEKYLLSNSQYNIIVRTSAVIALYVLNHKRNI 553
>gi|416067187|ref|ZP_11582193.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|348002232|gb|EGY42937.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
Length = 960
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + +E +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQVESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|416086238|ref|ZP_11587401.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|348009969|gb|EGY50064.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
Length = 831
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|311114204|ref|YP_003985425.1| Rne/Rng family ribonuclease [Gardnerella vaginalis ATCC 14019]
gi|310945698|gb|ADP38402.1| Rne/Rng family ribonuclease [Gardnerella vaginalis ATCC 14019]
Length = 1176
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 671 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 730
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I AK +E + G
Sbjct: 731 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 783
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 784 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 843
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 844 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 902
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 903 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 962
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 963 VTSLGLVQMTRKR 975
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 570 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 627
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 628 VQNVLPSMEAAFVDIGQARNGVL 650
>gi|308234919|ref|ZP_07665656.1| ribonuclease G [Gardnerella vaginalis ATCC 14018 = JCM 11026]
Length = 1137
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 642 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 701
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I AK +E + G
Sbjct: 702 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 754
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 755 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 814
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 815 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 873
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 874 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 933
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 934 VTSLGLVQMTRKR 946
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 541 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 598
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 599 VQNVLPSMEAAFVDIGQARNGVL 621
>gi|50083690|ref|YP_045200.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter sp. ADP1]
gi|49529666|emb|CAG67378.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter sp. ADP1]
Length = 1138
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I + S G
Sbjct: 152 MLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLWSQIQSTSNS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFAIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|441504932|ref|ZP_20986924.1| Ribonuclease E [Photobacterium sp. AK15]
gi|441427514|gb|ELR64984.1| Ribonuclease E [Photobacterium sp. AK15]
Length = 1056
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 200/365 (54%), Gaps = 31/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP-QGTKDSKHTPGEKTWLQVQKGT 295
EA F D+ E +GF P K D + QG + K +++G
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIARDYFPADYTYQGRPNIKEV--------LKEGQ 95
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL
Sbjct: 96 EVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALSTL 155
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+G GL +RT G S E+L DL LL+ W+ + A SA P L+H
Sbjct: 156 DLPQGMGLIVRTAGVGKSAEDLAYDLNYLLNHWERVKGAADSAP----------APFLIH 205
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDK-RIPLFDK 472
+ ++DY + ++V+DS + Y ++++ + PD RV+LY+ PLF+
Sbjct: 206 QESNVIARAIRDYLRRDIGEIVIDSKKIYDRARNHIEQVRPDFLSRVKLYENTETPLFNH 265
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 266 YQIENQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALQTNLEA 323
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 324 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 383
Query: 593 ITRKR 597
++R+R
Sbjct: 384 MSRQR 388
>gi|262370011|ref|ZP_06063338.1| ribonuclease E [Acinetobacter johnsonii SH046]
gi|262315050|gb|EEY96090.1| ribonuclease E [Acinetobacter johnsonii SH046]
Length = 1156
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ + P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 YQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK + +L P G + +RT G S EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQNTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQIDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GS E L+ NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V
Sbjct: 300 DINSAKST--RGSDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|417556327|ref|ZP_12207386.1| ribonuclease, Rne/Rng family [Gardnerella vaginalis 315-A]
gi|333602822|gb|EGL14247.1| ribonuclease, Rne/Rng family [Gardnerella vaginalis 315-A]
Length = 1150
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 645 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 704
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I AK +E + G
Sbjct: 705 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 757
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 758 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 817
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 818 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 876
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 877 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 936
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 937 VTSLGLVQMTRKR 949
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 544 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 601
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 602 VQNVLPSMEAAFVDIGQARNGVL 624
>gi|119945868|ref|YP_943548.1| Rne/Rng family ribonuclease protein [Psychromonas ingrahamii 37]
gi|119864472|gb|ABM03949.1| RNAse E [Psychromonas ingrahamii 37]
Length = 1065
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 200/348 (57%), Gaps = 21/348 (6%)
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
E +GF P K + + T P+G K P K +++G +VI+Q+ KE G KG
Sbjct: 62 AERHGFLPLK----EIARTYFPEGY-SFKGRPNIKDV--IKEGQEVIIQIEKEERGNKGA 114
Query: 312 TLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAG 369
LT + L + +L+ + R G +SR+I G ERT LK L+ P G GL +RT G
Sbjct: 115 ALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSHLKLPNGMGLIVRTAGVG 174
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
+ EEL+ DL L++ W+ I E A++ P L+HR + ++DY
Sbjct: 175 KTPEELEWDLNVLVNHWQAIDEAARA----------QPAPFLIHRESNVIVRSIRDYLRR 224
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
+ ++V+D +T+ +++ + PD R++LY +PLF + +E +I + + V L
Sbjct: 225 DIGEIVIDHAKTFELAKNHIAMVRPDYVSRLKLYQGEVPLFTHYQVESQIESAFQREVRL 284
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549
P+GGS+VI+ TEAL SID+N GS E+ + NL AA++IAR+LRLRD+GG++
Sbjct: 285 PSGGSIVIDPTEALTSIDINSARAT--RGSDIEETAFNTNLEAAEEIARQLRLRDLGGLV 342
Query: 550 VVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
V+DFIDM ++R V ++++V +DR+ +++ +SR GLME++R+R
Sbjct: 343 VIDFIDMTPPRHQREVENRMRESVRQDRARIQLGRISRFGLMEMSRQR 390
>gi|444337143|ref|ZP_21151162.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|444348455|ref|ZP_21156115.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
gi|443546968|gb|ELT56550.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
gi|443547476|gb|ELT56962.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
Length = 834
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|288940467|ref|YP_003442707.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180]
gi|288895839|gb|ADC61675.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180]
Length = 1001
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/401 (34%), Positives = 220/401 (54%), Gaps = 37/401 (9%)
Query: 203 QFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPS 260
Q +N D E G + + + K V I EP EA F D+ E +GF P
Sbjct: 22 QLLYNLDIESPGREQKKANIYKGV----ITRVEPSLEAAFVDY-------GAERHGFLPL 70
Query: 261 KSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPK 318
K E+ P K PG + ++ V++G +V+VQ+ KE G KG LT +
Sbjct: 71 K-EIARSYF--EPDSVK-----PGSRVSIKESVREGREVVVQIDKEERGNKGAALTTFIS 122
Query: 319 LRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQ 376
L R+ +L+ + R G VSR+I G +RT L+ LQ PE G+ +RT G ++EELQ
Sbjct: 123 LAGRYLVLMPNNPRAGGVSRRIEGQDRTELRDAMSQLQLPEDMGMIVRTAGVGKNVEELQ 182
Query: 377 KDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVV 436
DL+ LL W+ I+ +S P L+++ + ++DY + ++V+
Sbjct: 183 WDLDYLLQLWQAIVSSGESRK----------APFLIYQESDVIIRSIRDYLRVDIGEIVI 232
Query: 437 DSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLV 496
D Y ++++ + P ++ LY +PLF ++ IE +I + + V LP+GGS+V
Sbjct: 233 DDRTVYERAENFIRQVMPQNLKKLRLYQDEVPLFTRYQIETQIESAFQREVRLPSGGSIV 292
Query: 497 IEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDM 556
I+ TEAL SID+N G+ E+ L+ NL AA +IAR+LRLRD+GG+ V+DFIDM
Sbjct: 293 IDHTEALTSIDINSARAT--KGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDM 350
Query: 557 ADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
N+R V + +++A+++DR+ V+V+ +SR GL+E++R+R
Sbjct: 351 GPPKNQRAVEDRLREALKQDRARVQVARISRFGLLEMSRQR 391
>gi|415707925|ref|ZP_11462372.1| ribonuclease G [Gardnerella vaginalis 0288E]
gi|388053019|gb|EIK76018.1| ribonuclease G [Gardnerella vaginalis 0288E]
Length = 1135
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 642 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 701
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I AK +E + G
Sbjct: 702 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 754
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 755 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 814
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 815 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 873
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 874 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 933
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 934 VTSLGLVQMTRKR 946
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 541 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 598
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 599 VQNVLPSMEAAFVDIGQARNGVL 621
>gi|415705761|ref|ZP_11461032.1| ribonuclease G [Gardnerella vaginalis 75712]
gi|388052483|gb|EIK75507.1| ribonuclease G [Gardnerella vaginalis 75712]
Length = 1135
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 642 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 701
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I AK +E + G
Sbjct: 702 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 754
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 755 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 814
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 815 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 873
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 874 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 933
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 934 VTSLGLVQMTRKR 946
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 541 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 598
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 599 VQNVLPSMEAAFVDIGQARNGVL 621
>gi|358011202|ref|ZP_09143012.1| ribonuclease E [Acinetobacter sp. P8-3-8]
Length = 1132
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 220/395 (55%), Gaps = 37/395 (9%)
Query: 212 HDGDDFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEV 264
H DFD+ + + I G EP EA F ++ G GF S E+
Sbjct: 22 HRLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREI 73
Query: 265 PDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFW 324
+ + + P+ T + + + +GT+++VQV KE G KG L+ Y L R+
Sbjct: 74 ANTYYKADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTYISLAGRYL 125
Query: 325 ILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGL 382
+L+ + + G +SR+I+G R LK + +L P G + +RT G S EELQ DL+ L
Sbjct: 126 VLMPNNPKGGGISRQISGSVREELKEMLASLNTPRGMSVIVRTAGIGRSQEELQLDLQHL 185
Query: 383 LSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTY 442
L W I A S G P+L+H+ G ++DY + V ++++DS + Y
Sbjct: 186 LDLWAQIQSTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVTEILIDSEQAY 235
Query: 443 HEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEA 502
+E ++++ + P+ D+++ Y PLF F IE +I + V LP+GGS+VI+QTEA
Sbjct: 236 NEAYNFVKAVMPNQVDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEA 295
Query: 503 LVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNK 562
LVSID+N GH E+ L NL AA++I+R+LRLRDIGG++V+DFIDM + N+
Sbjct: 296 LVSIDINSAKSTRGHDV--EETALSTNLEAAEEISRQLRLRDIGGLVVIDFIDMTKERNQ 353
Query: 563 RLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
R+V +++++ + DR+ ++ +LSR GLME++R+R
Sbjct: 354 RMVEAKLRESTQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|297562318|ref|YP_003681292.1| Rne/Rng family ribonuclease [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846766|gb|ADH68786.1| ribonuclease, Rne/Rng family [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 1007
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 185/307 (60%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 479 LKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDKERARLKQI 538
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G G+ +RT A G S EEL++D+ L W +I +KSA P
Sbjct: 539 LKKVMPSGAGVIVRTAAEGASEEELERDITRLAKQWDSIKRKSKSAN----------APS 588
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE +VV + V Y+ +AP+L +R+ +++ +F
Sbjct: 589 LLNSEPDLTVRVVRDVFNEDFSSLVVSGEEAWTTVREYVDYVAPNLSERLSHWNEDRDVF 648
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ ++E+IN L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 649 AAYRVDEQINKALERKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGQGGNLEETVTKNNL 707
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 708 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMLECLSRDRTKHQVAEVTSLGL 767
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 768 VQMTRKR 774
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED+ LVE ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 403 QIAVLEDDILVEHYVDRATHRSYVGNVYLGRVQNVLPSMEAAFVDIGKGRNAVL 456
>gi|332284962|ref|YP_004416873.1| ribonuclease E [Pusillimonas sp. T7-7]
gi|330428915|gb|AEC20249.1| ribonuclease E [Pusillimonas sp. T7-7]
Length = 962
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 185/307 (60%), Gaps = 14/307 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G ++I+QV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 95 EGQELIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELREAM 154
Query: 352 KTL-QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L P G + RT G S+EELQ DL LL W I A+ E A PI
Sbjct: 155 DQLDTPSGMSIIARTAGIGRSVEELQWDLSYLLQLWTAIDGAAR----------ENAAPI 204
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L++ + ++DY++ ++ ++++D+ + + T+++ + PD RV++Y IPLF
Sbjct: 205 LIYLESSLVIRAIRDYYSPEIGEILIDTDDIHEQATAFMSVVMPDTVQRVKMYRDDIPLF 264
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+F IE +I S+ V LP+GGS+VI+ TEALV+IDVN GS E+ + NL
Sbjct: 265 SRFQIEHQIETAYSRTVQLPSGGSVVIDHTEALVAIDVNSARST--RGSDIEETAMRTNL 322
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA ++AR+LRLRD+GG+IV+DFIDM + N+R V + ++ A+ DR+ V++ ++SR GL
Sbjct: 323 EAADEVARQLRLRDLGGLIVIDFIDMEEGKNQRAVEQRLRDALHFDRARVQMGKISRFGL 382
Query: 591 MEITRKR 597
ME++R+R
Sbjct: 383 MELSRQR 389
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FV+ G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K + RT +
Sbjct: 64 RHGFLPFKEVARSYFKEGVDVRTAR 88
>gi|71282108|ref|YP_269009.1| ribonuclease E [Colwellia psychrerythraea 34H]
gi|71147848|gb|AAZ28321.1| ribonuclease E [Colwellia psychrerythraea 34H]
Length = 1004
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 210/377 (55%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ + I EP EA F D+ D H GF P K + + P+G +
Sbjct: 40 NIYKAKITRIEPSLEAAFVDY-GADRH------GFLPMK----EIAREYFPKGYT-FQGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K L +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKEVLH--EGQEVIVQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKV-IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK ++K P+G GL +RT G EEL+ DL LL W+ I +
Sbjct: 146 DERTELKASLSKLDLPKGMGLIVRTAGVGKDYEELKWDLSVLLHHWQAI----------S 195
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
D G P L+H+ L ++DY + ++++D P+T+ V +++ + PD +++
Sbjct: 196 DAGKSRPAPFLIHQETNLILRAIRDYLRRDIGEVLIDRPKTFESVKKHIEVVRPDFLNKI 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + V LP+GGS+VI+ TEA+ SID+N GS
Sbjct: 256 KLYTSDVPLFTHYQIETQIETAFQREVRLPSGGSIVIDPTEAMTSIDINSARAT--KGSD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA++IAR+LRLRD+GG++V+DFIDM ++R V ++ +V +DR+ +
Sbjct: 314 IEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDSVHQDRARI 373
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GL+E++R+R
Sbjct: 374 QLGKISRFGLLEMSRQR 390
>gi|406662803|ref|ZP_11070888.1| Ribonuclease E [Cecembia lonarensis LW9]
gi|405553177|gb|EKB48452.1| Ribonuclease E [Cecembia lonarensis LW9]
Length = 401
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 184/302 (60%), Gaps = 12/302 (3%)
Query: 298 IVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKVIAKTLQP 356
+VQVVKE + TKGP L+ + R+ +L+ D + VS+KI ER RL + +++P
Sbjct: 1 MVQVVKEPISTKGPRLSCELSIAGRYLVLVPFSDTVNVSKKIRSADERKRLVRLITSIKP 60
Query: 357 EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAM 416
FG+ IRTVA G S+ EL KDL LLSTW++ M+ LA +G + + M
Sbjct: 61 SNFGVIIRTVAEGQSVTELDKDLRNLLSTWEDGMKK-----LAKAKGRDKVIG-----EM 110
Query: 417 GQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIE 476
SI++D NE + V+ Y ++ SY++ IAP+ V+LY+ + LF+ F IE
Sbjct: 111 SMASSIIRDLLNESFDAITVEDELIYDQIRSYIRSIAPEKEKIVKLYNGKAKLFENFGIE 170
Query: 477 EEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQI 536
++I ++ + + LP GG ++IE TEAL IDVN G+ S +E L NL + K+I
Sbjct: 171 KQIKSLFGQTISLPQGGYVIIEHTEALHVIDVNSGNKS-NQESDQENTALKTNLVSVKEI 229
Query: 537 ARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRK 596
AR+LRLRD+GGIIVVDFIDM NK+ +Y+ +++A++ DRS V L++ GLM+ITR+
Sbjct: 230 ARQLRLRDMGGIIVVDFIDMKKADNKKAIYDAMREAMKDDRSKHTVLPLTKFGLMQITRQ 289
Query: 597 RA 598
R
Sbjct: 290 RV 291
>gi|416047026|ref|ZP_11575912.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|347994336|gb|EGY35629.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
Length = 963
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 185/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALST 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|330469631|ref|YP_004407374.1| ribonuclease [Verrucosispora maris AB-18-032]
gi|328812602|gb|AEB46774.1| ribonuclease [Verrucosispora maris AB-18-032]
Length = 1028
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 193/307 (62%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + G+SRK+ ER RL+ +
Sbjct: 579 LKSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPGGNASGISRKLPDTERKRLRDV 638
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L P+G G+ +RT A G S +EL +D++ L + W++I AK+A EG P+
Sbjct: 639 LKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDI--QAKAA--------EGGAPV 688
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +V+D FNE +++V++ ++Y V SYL ++PDL R+ + +F
Sbjct: 689 LLYEEPDLVIRVVRDLFNEDFRELVIEGDQSYDMVESYLSHVSPDLLARLRRHVGTTDVF 748
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ I+E+I L ++V LP+GG LVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 749 AEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGK-YTGAGGNLEETVTRNNL 807
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 808 EAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 867
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 868 VQMTRKR 874
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR IAVLED LVE + + +VYLG V
Sbjct: 476 ILSESEFLARREAVDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRSSTGTMAGNVYLGKVQ 535
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 536 NVLPSMEAAFVDIGRGRNAVL 556
>gi|424057103|ref|ZP_17794620.1| rne/Rng family ribonuclease [Acinetobacter nosocomialis Ab22222]
gi|407440636|gb|EKF47153.1| rne/Rng family ribonuclease [Acinetobacter nosocomialis Ab22222]
Length = 1109
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQSTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|260549181|ref|ZP_05823402.1| ribonuclease E [Acinetobacter sp. RUH2624]
gi|260407909|gb|EEX01381.1| ribonuclease E [Acinetobacter sp. RUH2624]
Length = 1109
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQSTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|258625454|ref|ZP_05720347.1| ribonuclease E [Vibrio mimicus VM603]
gi|258582258|gb|EEW07114.1| ribonuclease E [Vibrio mimicus VM603]
Length = 1034
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|88810810|ref|ZP_01126067.1| RNase E [Nitrococcus mobilis Nb-231]
gi|88792440|gb|EAR23550.1| RNase E [Nitrococcus mobilis Nb-231]
Length = 910
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 189/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQV KE G KG LT + L R+ +L+ + R G VSR+I G +R ++
Sbjct: 92 IREGQELVVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGQDRNEIRD 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++L PEG GL +RT G S+EELQ DL+ LL+ W +I + A E
Sbjct: 152 ALRSLDVPEGMGLIVRTAGVGRSVEELQWDLDYLLNLWMSIQKAA----------AERNA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+++ + ++DY + +++VD P Y + ++Q + P +++ Y +P
Sbjct: 202 PLLIYQESNVIIRALRDYLRNDIAEILVDDPDVYEQAKGFIQQVMPHNLAKLKPYQDNVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ +E +I + + + LP+GG++VI++TEAL+SID+N G+ E+ L
Sbjct: 262 LFTRYQLESQIESAFQREIRLPSGGAIVIDRTEALISIDINSSRAT--KGADIEETALQT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IVVDFIDM + N+R V +++AV+ DR+ V+V +SR
Sbjct: 320 NNEAADEVARQLRLRDLGGLIVVDFIDMGANRNQREVENRLREAVKMDRARVQVGRISRF 379
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 380 GLLEMSRQR 388
>gi|157375769|ref|YP_001474369.1| ribonuclease [Shewanella sediminis HAW-EB3]
gi|157318143|gb|ABV37241.1| ribonuclease, Rne/Rng family [Shewanella sediminis HAW-EB3]
Length = 1201
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 180/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G EL+ DL+ L W I E A EG
Sbjct: 154 AMSELEVPQGMGLIVRTAGVGKDSAELKWDLKVLEHHWTAIKE--------ASEG--RPA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + + ++ + PD DR++ YD +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDAKQHVALVRPDFVDRIKQYDAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|311113740|ref|YP_003984962.1| ribonuclease [Rothia dentocariosa ATCC 17931]
gi|310945234|gb|ADP41528.1| probable ribonuclease [Rothia dentocariosa ATCC 17931]
Length = 1204
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 181/304 (59%), Gaps = 9/304 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I K
Sbjct: 519 GDSVLVQVTKDPIGHKGARLTSQVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKD 578
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+G G+ +RT A G S EEL D+ L + W+ I E A S + A P +L+
Sbjct: 579 KLPDGAGVIVRTAAEGASEEELTHDINRLRAQWEEIQEKANSRKVLA--------PEMLY 630
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + V+D FNE M+V + + +Y+ +APDL R++ ++ LFD +
Sbjct: 631 QEPDLMIKTVRDVFNEDFTSMIVQGQSAWDSIEAYVTYVAPDLLSRLQKWEDEDDLFDHY 690
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 691 RINEQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 749
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 750 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQM 809
Query: 594 TRKR 597
TRKR
Sbjct: 810 TRKR 813
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED L E + + + +VYLG V ++P+M AFV+IG R +++
Sbjct: 440 QIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVL 493
>gi|453075612|ref|ZP_21978397.1| ribonuclease [Rhodococcus triatomae BKS 15-14]
gi|452762700|gb|EME20991.1| ribonuclease [Rhodococcus triatomae BKS 15-14]
Length = 1064
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 193/310 (62%), Gaps = 9/310 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KG LT L RF + + G+SRK+ ER RLK I
Sbjct: 474 LKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEI 533
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + P G+ IRT A G S EEL +D++ L S W I + A+ AAD+G G P
Sbjct: 534 LREVVPPEAGVIIRTAAEGVSEEELSRDVQRLQSQWAEIEQQAE----AADKGRSGN-PK 588
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+ + +V+D FNE K+V++ +++ V SY++ +APDL RVE Y+ +
Sbjct: 589 ALYEEPDMLVKVVRDLFNEDFSKIVIEGEKSWSTVESYIRTVAPDLLPRVERYEPQAGGP 648
Query: 471 DKF---NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
D F I+E+++ L ++V LP+GG+LVI++TEA+ +DVN G G G + E+ +
Sbjct: 649 DVFVARRIDEQLSKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGK-FTGAGGNLEETVTR 707
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
NL AA++I R++RLRDIGG+IVVDFIDM +SN+ LV + +A+ RDR+ +VSE++
Sbjct: 708 NNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTS 767
Query: 588 HGLMEITRKR 597
GL+++TRK+
Sbjct: 768 LGLVQMTRKK 777
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSR 138
+ ++AVLED+ LVE + S +VYLG V ++P+M AF++IG R
Sbjct: 396 LTQVAVLEDDILVEHFVTTSASASMVGNVYLGRVQNVLPSMEAAFIDIGRGR 447
>gi|269957053|ref|YP_003326842.1| ribonuclease, Rne/Rng family [Xylanimonas cellulosilytica DSM
15894]
gi|269305734|gb|ACZ31284.1| ribonuclease, Rne/Rng family [Xylanimonas cellulosilytica DSM
15894]
Length = 1043
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 187/307 (60%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ +L+ G+SRK+ VER RLK +
Sbjct: 642 LKSGDSVLVQVTKDPIGHKGARLTSQVTLAGRYLVLVPGGGMTGISRKLPDVERNRLKKV 701
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + PEG G+ +RT A G S EEL+ D+E L + W I A A+ +A P
Sbjct: 702 LRDIVPEGAGVIVRTAAEGASEEELRADVERLQNQWTGITTKAGRASTSA--------PA 753
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL + +V+D FN+ ++V + EV Y++++APDL +RV + + +F
Sbjct: 754 LLQGEPDLAIRVVRDIFNDDFSSLIVQGDGAWQEVAGYVEELAPDLRERVTSWTENTDVF 813
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++E++ + ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL
Sbjct: 814 SVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FTGAGGTLEETVTRNNL 872
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 873 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGL 932
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 933 VQMTRKR 939
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
+I++ F++ ++ S+ +R IAVLED LVE + + +VYLG V
Sbjct: 538 IITEAEFLARRESVSRSMIVRERDGRTQIAVLEDGVLVEHYVSQQSQSSMVGNVYLGRVQ 597
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV++G R +++
Sbjct: 598 NVLPSMEAAFVDVGKGRNAVL 618
>gi|441499714|ref|ZP_20981889.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Fulvivirga imtechensis AK7]
gi|441436454|gb|ELR69823.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Fulvivirga imtechensis AK7]
Length = 520
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 147/405 (36%), Positives = 224/405 (55%), Gaps = 22/405 (5%)
Query: 201 LVQFEHNDD--EEHDGDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNG 256
LV+F H++D + GD + V +V++ +N + ID G + F +L+ S+
Sbjct: 24 LVEFHHDEDGTQFSVGDIYLGTVKKVVQGLNAAFIDIGYEKDAFLHYLDLGPKF---SSL 80
Query: 257 FFPSKSEVPDDSHTSHPQ--GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLT 314
+K V + +S + G K G K + + +++VQVVKE + TKGP L+
Sbjct: 81 HEFTKRAVSKKNTSSRLEKFGLKPDIDKHG-KIGNVLSRNQQILVQVVKEPISTKGPRLS 139
Query: 315 AYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLE 373
L R+ +L+ + + VS+KI + ER RL + +++PE +G+ IRTVA G +
Sbjct: 140 CELSLAGRYLVLVPFSNTVNVSKKIGSSDERKRLVRLVSSIKPENYGVIIRTVAEGKDVR 199
Query: 374 ELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKK 433
EL DL LL+TW H + AL + E + M + +I++D NE
Sbjct: 200 ELDTDLRNLLNTW-----HEGAKALRTAKPREKVIG-----EMSKASAILRDVLNESFDN 249
Query: 434 MVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGG 493
+ +D Y EV SY++ IAPD V+ Y+ + +F+ F IE +I + + V L GG
Sbjct: 250 IHIDDKEIYDEVKSYIKTIAPDKEKIVKYYNGKSKIFENFGIERQIKSAFGQSVSLKGGG 309
Query: 494 SLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDF 553
L++E TEAL IDVN G+ +E L VN+ AAK+IAR+LRLRD+GGIIVVDF
Sbjct: 310 YLIVEHTEALHVIDVNSGNKS-NREEDQEATALSVNIEAAKEIARQLRLRDMGGIIVVDF 368
Query: 554 IDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRA 598
IDM NK+L+Y+++K+ + DRS V LS+ GLM+ITR+R
Sbjct: 369 IDMKRAENKKLIYKKIKEEMAADRSKFTVLPLSKFGLMQITRQRV 413
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 74 VSTVILINSSI--CTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAF 131
+S ++INS+ C RIA+L+D+ LVE + + +YLG V K+V + AF
Sbjct: 1 MSNELIINSTQNGC---RIALLKDKSLVEFHHDEDGTQFSVGDIYLGTVKKVVQGLNAAF 57
Query: 132 VNIGNSRPSLMDIKHYREPFIFPPFRCR---TKKQEVNGSASAALEEHAVTYDND 183
++IG + + + HY + + P F TK+ + S+ LE+ + D D
Sbjct: 58 IDIGYEKDAFL---HYLD--LGPKFSSLHEFTKRAVSKKNTSSRLEKFGLKPDID 107
>gi|387120452|ref|YP_006286335.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D7S-1]
gi|415757027|ref|ZP_11481231.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D17P-3]
gi|429734639|ref|ZP_19268647.1| S1 RNA binding domain protein [Aggregatibacter
actinomycetemcomitans Y4]
gi|348655587|gb|EGY71033.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D17P-3]
gi|385874944|gb|AFI86503.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D7S-1]
gi|429151579|gb|EKX94442.1| S1 RNA binding domain protein [Aggregatibacter
actinomycetemcomitans Y4]
Length = 963
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 185/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALST 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|416034818|ref|ZP_11573382.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|347997696|gb|EGY38670.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
Length = 831
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 185/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALST 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 379 GLLEMSRQR 387
>gi|445437412|ref|ZP_21441058.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC021]
gi|444753994|gb|ELW78630.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC021]
Length = 1109
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQSTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|431929967|ref|YP_007243013.1| Rne/Rng family ribonuclease [Thioflavicoccus mobilis 8321]
gi|431828270|gb|AGA89383.1| ribonuclease, Rne/Rng family [Thioflavicoccus mobilis 8321]
Length = 1094
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 189/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +V+VQ+ KE G KG LT + L R+ +L+ + R G VSR+I G +RT L+
Sbjct: 95 VKEGREVVVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGEDRTELRA 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ PE GL +RT G ++EELQ DL+ LL W+ I + A E +
Sbjct: 155 TMSQLQIPEDMGLIVRTAGVGKNVEELQWDLDYLLQLWQAIEKSAD----------ERSA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DY + ++V+D + Y + +++ + P ++ LY+ +P
Sbjct: 205 PFLIYQESDVIIRSIRDYLRVDIGEIVIDDRKMYEKAEQFMRQVMPGNLKKLRLYEDEVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I ++ + V LP+GGS+VI+ TEAL S+D+N G+ E+ L+
Sbjct: 265 LFTRYQIESQIESVFQRAVQLPSGGSIVIDHTEALTSVDINSARAT--KGADIEETALNT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+ V+DFIDM N+R V +++A+++DR+ V+V+ +SR
Sbjct: 323 NLEAADEIARQLRLRDLGGLFVIDFIDMTPAKNQREVENRLREALKQDRARVQVARISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
>gi|374335783|ref|YP_005092470.1| ribonuclease E [Oceanimonas sp. GK1]
gi|372985470|gb|AEY01720.1| ribonuclease E [Oceanimonas sp. GK1]
Length = 976
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 185/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 81 VKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 140
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+++ P+G GL +RT G S EEL+ DL L + W I E A+S
Sbjct: 141 ALSRLKLPDGMGLIVRTAGVGKSGEELEWDLNVLKTHWTAIQEAAESRT----------A 190
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+P + ++Q + PD +R++LY+ +P
Sbjct: 191 PFLIHQESNVIVRAIRDYLRRDIGEILIDNPVVFERAKQHIQLVRPDFVNRIKLYEGEVP 250
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L
Sbjct: 251 MFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALQT 308
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++ +SR
Sbjct: 309 NLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRQDRARIQLGRISRF 368
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 369 GLLEMSRQR 377
>gi|425742173|ref|ZP_18860295.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-487]
gi|425489074|gb|EKU55397.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-487]
Length = 1109
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQSTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|271968506|ref|YP_003342702.1| ribonuclease E [Streptosporangium roseum DSM 43021]
gi|270511681|gb|ACZ89959.1| Ribonuclease E [Streptosporangium roseum DSM 43021]
Length = 922
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 186/309 (60%), Gaps = 11/309 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
+ ++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ERTRLK
Sbjct: 523 VALKSGQSVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPDGSMTGISRKLPDKERTRLK 582
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K + PE G+ +RT A G S EEL +D+ L + W+NI AKSA +
Sbjct: 583 SILKKVMPENAGVIVRTAAEGASEEELGRDVARLSAQWENIQRKAKSA----------SA 632
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LL T+ +V+D FNE +VV + V Y++ +AP L DR+ ++
Sbjct: 633 PELLSSEPDLTVRVVRDVFNEDFTSLVVAGDDVWETVDEYVRYVAPHLADRLSRWEDGAD 692
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F + I+E+I + ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 693 VFAAYRIDEQIAKAMERKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGQGGNLEETVTRN 751
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRDIGGIIV+DFIDM ++N+ LV + + + RDR+ +V+E++
Sbjct: 752 NLEAAEEIVRQLRLRDIGGIIVIDFIDMVLENNRDLVLRRLLECLARDRTKHQVAEVTSL 811
Query: 589 GLMEITRKR 597
GL+++TRKR
Sbjct: 812 GLVQMTRKR 820
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q IAV+ED LVE + S +VYLG V ++P+
Sbjct: 428 FLARRESVERVMVVRRTGGRTQ-IAVMEDGVLVEHYVNREASQSYVGNVYLGKVQNVLPS 486
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 487 MEAAFVDIGKGRNAVL 502
>gi|334704952|ref|ZP_08520818.1| ribonuclease E [Aeromonas caviae Ae398]
Length = 1045
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 207/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 51 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 94
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 95 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 154
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL LL+ W +I H S +A P+L+
Sbjct: 155 LTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQQRSA--------PVLI 204
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + S+++ + PD +RV+LY + LF+
Sbjct: 205 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKSHIELVRPDFLNRVKLYKGDVALFNH 264
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 265 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 322
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 323 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 382
Query: 593 ITRKR 597
++R+R
Sbjct: 383 MSRQR 387
>gi|386829017|ref|ZP_10116124.1| ribonuclease, Rne/Rng family [Beggiatoa alba B18LD]
gi|386429901|gb|EIJ43729.1| ribonuclease, Rne/Rng family [Beggiatoa alba B18LD]
Length = 784
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 189/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G +R+ +
Sbjct: 120 LKEGQELIVQVDKEERGNKGAALTTFISLAGRYVVLMPNNPRAGGVSRRIEGDDRSEARE 179
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ TL P+G G+ +RT G + EEL+ DLE LL W I E ++ + +
Sbjct: 180 VLSTLDIPDGMGVILRTAGMGKTAEELKWDLEYLLGLWHAIEESSR----------DRSA 229
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DYF E + +++VD Y E +++ + P +V+LY+ +P
Sbjct: 230 PFLIYQESNVIIRAIRDYFREDINEILVDDEEIYAEAMDFMRQVMPQYLTKVKLYNDNVP 289
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + + V LP+GG++V++ TEAL+SID+N G E+ L+
Sbjct: 290 LFTRYQIESQIESAFQREVRLPSGGAIVLDHTEALLSIDINSSKAT--KGGDIEETALNT 347
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL A ++IAR+LRLRD+GG+IV+DFIDM N+R V +K+A++ DR+ V+V +SR
Sbjct: 348 NLEAVEEIARQLRLRDLGGLIVIDFIDMMSHKNQREVESRLKEALKMDRARVQVGRISRF 407
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 408 GLLEMSRQR 416
>gi|381196988|ref|ZP_09904329.1| ribonuclease E [Acinetobacter lwoffii WJ10621]
Length = 1160
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ + P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 YKADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK + +L P G + +RT G S EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQNTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQIDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GS E L+ NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V
Sbjct: 300 DINSAKST--RGSDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|119478177|ref|ZP_01618233.1| ribonuclease E [marine gamma proteobacterium HTCC2143]
gi|119448686|gb|EAW29930.1| ribonuclease E [marine gamma proteobacterium HTCC2143]
Length = 956
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 204/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F DF D H GF P K E+ D P +
Sbjct: 53 NIYKGTITRVEPSLEAAFIDF-GADRH------GFLPLK-EISRDYFYRQPSDVQGRF-- 102
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
K V++GT+VIVQV KE G KG LT + L R+ +L+ + R G +SR I G
Sbjct: 103 ---KIRDVVKEGTEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRSIEG 159
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER+ LK + P+G G +RT A G S EELQ DL+ W I + A+
Sbjct: 160 EERSDLKDALNNMAIPKGMGAIVRTAAVGRSAEELQWDLDYQAQIWDAIKKAAE------ 213
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+LL + + ++DY E + ++++D+ Y + +++ I P R+
Sbjct: 214 ----DQPAPLLLLQDSNVIIRAIRDYLREDIDQVLIDAEEAYTDAMNFVTRIMPHYESRI 269
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY +PLF+++ IE +I + V LP+GGS+VI+ TEALVSID+N G +
Sbjct: 270 RLYQDPVPLFNRYQIESQIETAFQRDVDLPSGGSIVIDPTEALVSIDINSARAT--KGGN 327
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA +IAR+LRLRD+GG+IV+DFIDM+ N+R V ++ A+ DR+ V
Sbjct: 328 IEETALQTNLEAADEIARQLRLRDMGGLIVIDFIDMSAAKNQRAVENRMRDALNIDRARV 387
Query: 581 KVSELSRHGLMEITRKR 597
+V +SR GL+E++R+R
Sbjct: 388 QVGRISRFGLLEMSRQR 404
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 51/87 (58%), Gaps = 10/87 (11%)
Query: 73 FVSTV--ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQC-DSVYLGVVTKLVPNMGG 129
FVS + +LIN++ R+ +++ ++L +L +E ++ VQ D++Y G +T++ P++
Sbjct: 10 FVSNMKRMLINATQPEELRVGLVDGQRLYDLDIE-NRTRVQMKDNIYKGTITRVEPSLEA 68
Query: 130 AFVNIGNSRPSLMDIKH------YREP 150
AF++ G R + +K YR+P
Sbjct: 69 AFIDFGADRHGFLPLKEISRDYFYRQP 95
>gi|415702460|ref|ZP_11458631.1| ribonuclease G [Gardnerella vaginalis 284V]
gi|388053421|gb|EIK76408.1| ribonuclease G [Gardnerella vaginalis 284V]
Length = 1141
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 191/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 645 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 704
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I +E + G
Sbjct: 705 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI-------ETKREEFLHGKR 757
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 758 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 817
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 818 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 876
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 877 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 936
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 937 VTSLGLVQMTRKR 949
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 544 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 601
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 602 VQNVLPSMEAAFVDIGQARNGVL 624
>gi|424807257|ref|ZP_18232665.1| ribonuclease E [Vibrio mimicus SX-4]
gi|342325199|gb|EGU20979.1| ribonuclease E [Vibrio mimicus SX-4]
Length = 1031
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|262166133|ref|ZP_06033870.1| ribonuclease E [Vibrio mimicus VM223]
gi|262025849|gb|EEY44517.1| ribonuclease E [Vibrio mimicus VM223]
Length = 1028
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|449144543|ref|ZP_21775358.1| ribonuclease E [Vibrio mimicus CAIM 602]
gi|449080044|gb|EMB50963.1| ribonuclease E [Vibrio mimicus CAIM 602]
Length = 1034
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|300112961|ref|YP_003759536.1| Rne/Rng family ribonuclease [Nitrosococcus watsonii C-113]
gi|299538898|gb|ADJ27215.1| ribonuclease, Rne/Rng family [Nitrosococcus watsonii C-113]
Length = 764
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 199/347 (57%), Gaps = 24/347 (6%)
Query: 255 NGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPT 312
GF P K EV SH + PG++ +Q +++G +++VQV KE G KG
Sbjct: 65 QGFLPLK-EVTRSYFQSH-------QREPGDRPKVQEVLKEGQELVVQVEKEERGNKGAA 116
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
L+ + L R+ +L+ + R G VSR+I G ER+ L +TL+ PEG GL RT A G
Sbjct: 117 LSTFISLAGRYLVLMPNNPRAGGVSRRIEGEERSMLLEAMRTLEIPEGMGLITRTAAVGK 176
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ EELQ DL LL W++I AA EG P L+++ + ++DY
Sbjct: 177 NAEELQWDLNYLLHLWRSIQ--------AAAEG--QPAPFLIYQESDVIIRALRDYLRLD 226
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++D+P Y +++ + P +++LY ++ LF +F IE +I V LP
Sbjct: 227 IGEILIDTPDVYQRAYDFMRQVMPPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALP 286
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG++V++ TEAL +ID+N G E+ L NL AA++IAR+LRLRD+GG+IV
Sbjct: 287 SGGAIVVDYTEALTTIDINSARA--NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIV 344
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+DFIDMA N+R V +++ + DR+ V++ +SR GL+E++R+R
Sbjct: 345 IDFIDMAPLRNQRAVENRLRECLREDRARVQIGRISRFGLLEMSRQR 391
>gi|117619748|ref|YP_856763.1| ribonuclease E [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117561155|gb|ABK38103.1| ribonuclease E [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 1039
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 189/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++ P+G GL +RT G S EEL+ DL LL+ W +I + ++S +
Sbjct: 154 ALSGLTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQSRS----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ + ++DY V ++++D+P + ++++ + PD +RV+LY +
Sbjct: 204 PVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVA 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+ F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L
Sbjct: 264 LFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|255038178|ref|YP_003088799.1| ribonuclease, Rne/Rng family [Dyadobacter fermentans DSM 18053]
gi|254950934|gb|ACT95634.1| ribonuclease, Rne/Rng family [Dyadobacter fermentans DSM 18053]
Length = 520
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 190/309 (61%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKIT-GVERTRLKV 349
+ K ++VQ+VKE + TKGP L+ + R+ +L+ + + +S+KIT ER RL+
Sbjct: 116 LSKNQPILVQIVKEPISTKGPRLSCDISIAGRYIVLVPFSNSVNLSKKITDKQERNRLQR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P+ FG+ IRTVA G +EEL KDL+ L W+N ++ K A + V G
Sbjct: 176 LMSSIKPQNFGVIIRTVAMGKDVEELNKDLQDCLDKWENGIKALKDAK--PRDRVIGE-- 231
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
M + SI++D NE + VDS Y ++ +Y+ +IAP+ + + L++ + L
Sbjct: 232 ------MNRASSIIRDMLNESFDSITVDSKEVYDDIKAYIHNIAPEKENILRLHNGKNKL 285
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F++F +E++I ++ + V LPNGG L+IE TEAL IDVN G+ +E L VN
Sbjct: 286 FEQFGLEKQIKSLFGRSVSLPNGGYLIIEHTEALHVIDVNSGNKS-NSEEDQEATALSVN 344
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AAK+IAR+LRLRD+GGIIVVDFIDM NKR +++ ++ ++ DRS V LS+ G
Sbjct: 345 LEAAKEIARQLRLRDMGGIIVVDFIDMKKAENKRTLFDVMRDEMKGDRSKYTVLPLSKFG 404
Query: 590 LMEITRKRA 598
L++ITR+R
Sbjct: 405 LLQITRQRV 413
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LINS+ +RIA+L+D++L+E +E + +YLG V KLV + AFV+
Sbjct: 1 MSNELLINST-QKGERIALLQDKRLLEYHVETPDQSFTVGDIYLGTVRKLVAGLNAAFVD 59
Query: 134 IGNSRPSLMDIKHY 147
+G + + + HY
Sbjct: 60 VGFEKDAFL---HY 70
>gi|400974861|ref|ZP_10802092.1| ribonuclease [Salinibacterium sp. PAMC 21357]
Length = 956
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 9/309 (2%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L ++ G +V+VQV K+ +G KG LT+ L R+ + + + G+SRK+ ER+RLK
Sbjct: 383 LALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMSGISRKLPDTERSRLK 442
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K + PE G+ +RT A G + E+L D+ L S W +I +A +
Sbjct: 443 KILKGVLPENVGVIVRTAAEGATEEQLTLDVSRLTSQWADISAQVDNA--------QAQG 494
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LLH + I++D FNE K+V++ + Y++ +APDL DR++ ++ +
Sbjct: 495 PALLHSEPDLLIKIIRDVFNEDFHKLVIEGSDARKTIEGYVRSVAPDLLDRLQEHESTVD 554
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
F+++ + E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 555 SFEEYRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKN 613
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++
Sbjct: 614 NVEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSL 673
Query: 589 GLMEITRKR 597
GL+++TRK+
Sbjct: 674 GLVQMTRKK 682
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S +Q IAVLED LVE + + +VYLG V ++P+
Sbjct: 283 FLARRESVDRVMVVRSKFDRIQ-IAVLEDGVLVEHYVAKAQDASLIGNVYLGRVQNVLPS 341
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 342 MEAAFVDIGRGRNAVL 357
>gi|300741647|ref|ZP_07071668.1| ribonuclease, Rne/Rng family [Rothia dentocariosa M567]
gi|300380832|gb|EFJ77394.1| ribonuclease, Rne/Rng family [Rothia dentocariosa M567]
Length = 1171
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 181/304 (59%), Gaps = 9/304 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I K
Sbjct: 486 GDSVLVQVTKDPIGHKGARLTSQVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKD 545
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+G G+ +RT A G S EEL D+ L + W+ I E A S + A P +L+
Sbjct: 546 KLPDGAGVIVRTAAEGASEEELTHDINRLRTQWEEIQEKANSRKVLA--------PEMLY 597
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + V+D FNE M+V + + +Y+ +APDL R++ ++ LFD +
Sbjct: 598 QEPDLMIKTVRDVFNEDFTSMIVQGQSAWDSIEAYVTYVAPDLLSRLQKWEDEDDLFDHY 657
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 658 RINEQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 716
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 717 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQM 776
Query: 594 TRKR 597
TRKR
Sbjct: 777 TRKR 780
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED L E + + + +VYLG V ++P+M AFV+IG R +++
Sbjct: 407 QIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVL 460
>gi|312195823|ref|YP_004015884.1| ribonuclease, Rne/Rng family [Frankia sp. EuI1c]
gi|311227159|gb|ADP80014.1| ribonuclease, Rne/Rng family [Frankia sp. EuI1c]
Length = 1230
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 195/319 (61%), Gaps = 14/319 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER+RLK I
Sbjct: 686 LKPGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPDGQNAGISRKLPDVERSRLKSI 745
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I A+ A + P
Sbjct: 746 LKKITPEDGGVIVRTAAEGASEQELERDIERLAAQWEDISRKAQKA----------SAPA 795
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +++D FNE +++V ++ SY+ +APDL +RV + LF
Sbjct: 796 LLYGEPDLVVRVIRDIFNEDFTELLVQGSGEAEQIESYVDLVAPDLRNRVRRHVGTTDLF 855
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ ++E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 856 TEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGKGGNLEETVTKNNL 914
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 915 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 974
Query: 591 MEITRKR---AMMEQKADP 606
+++TRKR ++E ++P
Sbjct: 975 VQMTRKRVGQGLLEAYSEP 993
>gi|422307973|ref|ZP_16395127.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
CP1035(8)]
gi|408618784|gb|EKK91846.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
CP1035(8)]
Length = 1052
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|229521942|ref|ZP_04411359.1| ribonuclease E [Vibrio cholerae TM 11079-80]
gi|423883051|ref|ZP_17724188.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-60A1]
gi|424629983|ref|ZP_18068270.1| ribonuclease E [Vibrio cholerae HC-51A1]
gi|229340867|gb|EEO05872.1| ribonuclease E [Vibrio cholerae TM 11079-80]
gi|408054771|gb|EKG89730.1| ribonuclease E [Vibrio cholerae HC-51A1]
gi|408641175|gb|EKL12956.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-60A1]
Length = 1052
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|116749264|ref|YP_845951.1| ribonuclease [Syntrophobacter fumaroxidans MPOB]
gi|116698328|gb|ABK17516.1| RNAse E [Syntrophobacter fumaroxidans MPOB]
Length = 495
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 218/383 (56%), Gaps = 35/383 (9%)
Query: 220 SEVLKNVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK 277
+V+ N+ I+ +P +A F ++ E NGF P P+ HP+ +
Sbjct: 36 GKVVGNIYKGIVTHVQPSLQAAFVNY-------GMERNGFLP----FPE----IHPEYYE 80
Query: 278 DSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGV 335
+ E+ +Q + G +V+VQVVKE LG+KG LT Y L R +L+ + GV
Sbjct: 81 EDSD---ERVRIQDVIHSGQEVLVQVVKEELGSKGALLTTYISLAGRDVVLMPGQSQRGV 137
Query: 336 SRKIT-GVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
SRKI G +R RLK +A L+ PE FG+ +RT A G + E+ KD L+ W+ I +H
Sbjct: 138 SRKIEDGGQRERLKELAGDLKVPEEFGVILRTAAEGRTKREVTKDFNHLMKIWEEIRKHV 197
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ E P L+++ + +++DYFN +K ++VD +V +++ I+
Sbjct: 198 Q----------ETPAPALIYKEQDLAVRVIRDYFNPNIKTILVDDREVLKQVKDFIRIIS 247
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P V Y + P+ K+N+EE+I + K+VPL +GG LVI+ TEALV++DVN G
Sbjct: 248 PRHDRVVRFYKEDGPITGKYNLEEQIAQIFRKKVPLKSGGHLVIDPTEALVAVDVNSGRT 307
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
G G+ E+ + VN+ AA +I R+LRLRD+GG+IV+DFIDM D+ + R V +K+ +
Sbjct: 308 NSGEGAL-EEMVFKVNMEAAAEIPRQLRLRDLGGLIVIDFIDMRDNRHTREVERRLKEEI 366
Query: 574 ERDRSMVKVSELSRHGLMEITRK 596
++D++ + V +SR GL+E++R+
Sbjct: 367 KKDKAKITVGRISRFGLLELSRQ 389
>gi|358637864|dbj|BAL25161.1| ribonuclease E [Azoarcus sp. KH32C]
Length = 994
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/391 (35%), Positives = 213/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ ++I EP EA F D+ E +GF P K + S
Sbjct: 26 DLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY-------GSERHGFLPFK----EIS 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ G K + +++G ++IVQV K+ G KG LT Y L R+ +L+
Sbjct: 75 RSYFAPGVDAGKA----RIQDALREGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMP 130
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ER L+ + L+ P G L RT A G + EELQ DL LL W
Sbjct: 131 NNPRGGGVSRRVEGDERNELREVMDQLESPAGMSLIARTAAIGRNAEELQWDLNYLLQLW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ I A+S + A L+++ + ++DYF + ++++D+ Y +
Sbjct: 191 RAIEGAAQSQSGA----------FLIYQEGSLVIRAIRDYFQPDIGEILIDTDDIYEQAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P +RV+ Y +PLF +F IE +I + S++V LP+GG++VI+ TEALVSI
Sbjct: 241 QFMAHVMPGNVNRVKRYSDDVPLFSRFQIEHQIESAYSRQVSLPSGGAVVIDHTEALVSI 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G+ E+ NL AA++IAR+LRLRD+GG+IV+DFIDM N+R V
Sbjct: 301 DVNSGRST--KGADIEETAFRTNLEAAEEIARQLRLRDLGGLIVIDFIDMESQKNQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++ A+ DR+ V+ ++SR GL+E++R+R
Sbjct: 359 SRLRDALRHDRARVQTGKISRFGLLELSRQR 389
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T++ P++ AFV+ G+
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYGSE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K + P
Sbjct: 64 RHGFLPFKEISRSYFAP 80
>gi|262170982|ref|ZP_06038660.1| ribonuclease E [Vibrio mimicus MB-451]
gi|261892058|gb|EEY38044.1| ribonuclease E [Vibrio mimicus MB-451]
Length = 1034
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|421351762|ref|ZP_15802127.1| ribonuclease E [Vibrio cholerae HE-25]
gi|395952207|gb|EJH62821.1| ribonuclease E [Vibrio cholerae HE-25]
Length = 1049
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|288921987|ref|ZP_06416196.1| ribonuclease, Rne/Rng family [Frankia sp. EUN1f]
gi|288346649|gb|EFC80969.1| ribonuclease, Rne/Rng family [Frankia sp. EUN1f]
Length = 1058
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 191/319 (59%), Gaps = 14/319 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 557 LKSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLVYVPDGQNAGISRKLPDTERARLKSI 616
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EL++D+E L++ W++I A+ A + P
Sbjct: 617 LKKITPENGGVIVRTAAEGASEAELERDVERLVAQWEDIQRKAQKA----------SAPS 666
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +++D FNE +++V V Y+ +APDL DRV Y +F
Sbjct: 667 LLYGEPDLVVRVIRDVFNEDFTELIVQGSTEAATVEEYVDTVAPDLRDRVRRYVGTGDVF 726
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ ++E++ L ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL
Sbjct: 727 AEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FTGKGGNLEETVTKNNL 785
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 786 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 845
Query: 591 MEITRKR---AMMEQKADP 606
+++TRKR ++E ++P
Sbjct: 846 VQMTRKRVGQGLLEAYSEP 864
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED LVE + S +VYLG V ++ +M AFV+IG R +++
Sbjct: 481 QIAVLEDGVLVEHFVTRASSTSYAGNVYLGRVQNVLASMEAAFVDIGKGRNAVL 534
>gi|415727795|ref|ZP_11471483.1| ribonuclease G [Gardnerella vaginalis 6119V5]
gi|388065622|gb|EIK88101.1| ribonuclease G [Gardnerella vaginalis 6119V5]
Length = 1091
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 606 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 665
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E +QKDLE L+ W I AK +E + G
Sbjct: 666 AIVSKIAPKDMGIIIRTAAEGASEEAIQKDLESLVKQWDRI--EAKR-----EEYLHGKR 718
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + + YL+ +APDL +VE +D
Sbjct: 719 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVHQRINEYLEMMAPDLLSKVEYWDPAEH 778
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V L +GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 779 EGKDIFDKWQIDSQLRKGMERQVYLQSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 837
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 838 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 897
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 898 VTSLGLVQMTRKR 910
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG + ++P+M AFV+IG +R ++
Sbjct: 532 QISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVL 585
>gi|419830495|ref|ZP_14353980.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-1A2]
gi|419834177|ref|ZP_14357632.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-61A2]
gi|421354696|ref|ZP_15805028.1| ribonuclease E [Vibrio cholerae HE-45]
gi|422917881|ref|ZP_16952199.1| ribonuclease E [Vibrio cholerae HC-02A1]
gi|423822782|ref|ZP_17716792.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-55C2]
gi|423856748|ref|ZP_17720600.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-59A1]
gi|423998308|ref|ZP_17741560.1| ribonuclease E [Vibrio cholerae HC-02C1]
gi|424017202|ref|ZP_17757031.1| ribonuclease E [Vibrio cholerae HC-55B2]
gi|424020126|ref|ZP_17759912.1| ribonuclease E [Vibrio cholerae HC-59B1]
gi|424625500|ref|ZP_18063961.1| ribonuclease E [Vibrio cholerae HC-50A1]
gi|424634031|ref|ZP_18072131.1| ribonuclease E [Vibrio cholerae HC-52A1]
gi|424637109|ref|ZP_18075117.1| ribonuclease E [Vibrio cholerae HC-55A1]
gi|424641018|ref|ZP_18078901.1| ribonuclease E [Vibrio cholerae HC-56A1]
gi|424649084|ref|ZP_18086747.1| ribonuclease E [Vibrio cholerae HC-57A1]
gi|443528002|ref|ZP_21094050.1| ribonuclease E [Vibrio cholerae HC-78A1]
gi|341636763|gb|EGS61457.1| ribonuclease E [Vibrio cholerae HC-02A1]
gi|395953821|gb|EJH64434.1| ribonuclease E [Vibrio cholerae HE-45]
gi|408012053|gb|EKG49849.1| ribonuclease E [Vibrio cholerae HC-50A1]
gi|408017950|gb|EKG55422.1| ribonuclease E [Vibrio cholerae HC-52A1]
gi|408023164|gb|EKG60343.1| ribonuclease E [Vibrio cholerae HC-56A1]
gi|408023658|gb|EKG60817.1| ribonuclease E [Vibrio cholerae HC-55A1]
gi|408032603|gb|EKG69184.1| ribonuclease E [Vibrio cholerae HC-57A1]
gi|408620268|gb|EKK93280.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-1A2]
gi|408634758|gb|EKL06993.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-55C2]
gi|408640540|gb|EKL12329.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-59A1]
gi|408648999|gb|EKL20316.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-61A2]
gi|408852663|gb|EKL92485.1| ribonuclease E [Vibrio cholerae HC-02C1]
gi|408859947|gb|EKL99601.1| ribonuclease E [Vibrio cholerae HC-55B2]
gi|408867220|gb|EKM06582.1| ribonuclease E [Vibrio cholerae HC-59B1]
gi|443453518|gb|ELT17337.1| ribonuclease E [Vibrio cholerae HC-78A1]
Length = 1049
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|333893459|ref|YP_004467334.1| RNase E [Alteromonas sp. SN2]
gi|332993477|gb|AEF03532.1| RNase E [Alteromonas sp. SN2]
Length = 1100
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + + T P+G + + P K +++G +
Sbjct: 54 EAAFVDY-GADRH------GFLPLK----EIARTYFPKGYR-FEGRPNIKDV--IKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK L
Sbjct: 100 VIIQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLNKLD 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL+ LL+ W+ I + A+ E P L+H+
Sbjct: 160 LPDGMGLIVRTAGVGKSYEELEWDLKVLLTHWEAISKVAE----------EREAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++D Y + ++Q + PD RV+LY +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFASRVKLYRGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|403507979|ref|YP_006639617.1| ribonuclease, Rne/Rng family domain protein [Nocardiopsis alba ATCC
BAA-2165]
gi|402799734|gb|AFR07144.1| ribonuclease, Rne/Rng family domain protein [Nocardiopsis alba ATCC
BAA-2165]
Length = 1036
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 184/307 (59%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 485 LKSGQSVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDKERARLKQI 544
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G G+ +RT A G S EEL++D+ L W +I +KSA P
Sbjct: 545 LKKVMPSGAGVIVRTAAEGASEEELERDITRLAKQWDSIKRKSKSA----------GAPS 594
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE +VV + V Y+ +AP+L +R+ + + +F
Sbjct: 595 LLNSEPDLTVRVVRDVFNEDFSSLVVSGGEAWTTVHEYVDYVAPNLSERLSHWTEDRDVF 654
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+IN L ++V LP+GGSL+I++TEA+ +DVN G G G + E+ + NL
Sbjct: 655 AAYRIDEQINKALERKVWLPSGGSLIIDRTEAMTVVDVNTGK-FTGQGGNLEETVTKNNL 713
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 714 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMLECLSRDRTKHQVAEVTSLGL 773
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 774 VQMTRKR 780
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED+ LVE ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 409 QIAVLEDDVLVEHYVDRATHRSYVGNVYLGRVQNVLPSMEAAFVDIGKGRNAVL 462
>gi|153830605|ref|ZP_01983272.1| ribonuclease E [Vibrio cholerae 623-39]
gi|148873903|gb|EDL72038.1| ribonuclease E [Vibrio cholerae 623-39]
Length = 1052
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|148272667|ref|YP_001222228.1| putative ribonuclease [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830597|emb|CAN01533.1| putative ribonuclease [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 1006
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 183/309 (59%), Gaps = 11/309 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
+ ++ G +V+VQV K+ +G KG LT+ L R+ + + + G+SRK+ ER RLK
Sbjct: 438 VALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMNGISRKLPDTERARLK 497
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
K + PE G+ +RT A G + E+L+ D+E L S W I + A
Sbjct: 498 KTLKEVLPENVGVIVRTAAEGATEEQLKLDVERLTSQWAEISRQVEKAQ----------A 547
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LLH L I++D FNE +++V+D + YL+ +APDL DRV+ Y
Sbjct: 548 PALLHSEPDLLLKIIRDVFNEDFRELVIDGGDAQEIIEGYLRGVAPDLIDRVQTYSGEKD 607
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
FD + E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 608 SFDHHRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKN 666
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R++RLRDIGGIIVVDFIDM ++N+ LV + + + RDR+ +V+E++
Sbjct: 667 NLEAAEEIVRQMRLRDIGGIIVVDFIDMVLETNRDLVLRRLVECLSRDRTKHQVAEVTSL 726
Query: 589 GLMEITRKR 597
GL+++TRK+
Sbjct: 727 GLVQMTRKK 735
>gi|406903293|gb|EKD45420.1| hypothetical protein ACD_69C00301G0002 [uncultured bacterium]
Length = 716
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 191/309 (61%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQ+ KE G KG LT + L + +L+ + R+G VSR++ G ER L+
Sbjct: 96 LREGQEIMVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRVGGVSRRVEGKERDDLRD 155
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L PEG GL +RT G SL+EL+ DL+ L+ W I +A++E
Sbjct: 156 LLHNLNLPEGMGLIVRTAGVGKSLDELKWDLDSLMHRWHAI------ETVASEEN--HPA 207
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++D + + +++VD+P Y + Y++ + PD D+V+LY ++P
Sbjct: 208 PFLIYQEGDAVMRAIRDCLRQDIIEILVDNPELYEKTKQYIEQVKPDFIDKVKLYQDKVP 267
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE++I + V LP+GGS+ I+ TEAL+SIDVN GS E+ +
Sbjct: 268 LFSFYQIEKQIETAYQRVVRLPSGGSISIDHTEALISIDVNSARST--GGSDIEETAFNT 325
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG+IV+DFIDM+ ++R V +++++E DR+ V+V ++R
Sbjct: 326 NLEAAEEIARQLRLRDIGGLIVIDFIDMSQVKHQREVSHRLQESLEHDRARVQVGHITRF 385
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 386 GLLEMSRQR 394
>gi|296270425|ref|YP_003653057.1| ribonuclease, Rne/Rng family [Thermobispora bispora DSM 43833]
gi|296093212|gb|ADG89164.1| ribonuclease, Rne/Rng family [Thermobispora bispora DSM 43833]
Length = 990
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 186/307 (60%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 596 LKSGQSVLVQVTKDPIGHKGARLTSQITLPGRYLVYVPDGSMTGISRKLPDKERARLKQI 655
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + PE G+ +RT A G + EEL +D+ L + W++I AK+A+ P
Sbjct: 656 LRKVMPENAGVIVRTAAEGATEEELSRDVARLAAQWESIQRKAKTAS----------PPE 705
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL + +V+D FNE ++V ++ V Y++ +AP L DR++ +D+ +F
Sbjct: 706 LLLGEPDLMIRVVRDIFNEDFSTLIVQGDEAWNTVEEYVRYVAPHLLDRLKKWDEETDVF 765
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I L ++V LP+GGSLVI+QTEA+ IDVN G G G + E+ + NL
Sbjct: 766 TAYRIDEQIAKALERKVWLPSGGSLVIDQTEAMTVIDVNTGK-FTGQGGNLEETVTRNNL 824
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 825 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLLECLSRDRTKHQVAEVTSLGL 884
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 885 VQMTRKR 891
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V +++I + Q +AVLED LVE ++ + +VYLG V ++P+
Sbjct: 499 FLARRESVERIMIIRRNAGRTQ-VAVLEDGVLVEHYVDRESNRSYVGNVYLGKVQNVLPS 557
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 558 MEAAFVDIGKGRNAVL 573
>gi|389579683|ref|ZP_10169710.1| ribonuclease, Rne/Rng family [Desulfobacter postgatei 2ac9]
gi|389401318|gb|EIM63540.1| ribonuclease, Rne/Rng family [Desulfobacter postgatei 2ac9]
Length = 485
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/377 (37%), Positives = 215/377 (57%), Gaps = 32/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I+ EP +A F D+ G NGF K+E+ H + Q + + +
Sbjct: 41 NIYKGIVTRVEPSLQAVFVDYGAG-------KNGFL-QKNEI----HPDYFQEIEKNDRS 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV 342
+ ++KG ++IVQV K+ + KG LT Y L RF +L+ + GVSRKI
Sbjct: 89 ----LFNLIKKGQEMIVQVAKDPINLKGAMLTTYISLPGRFGVLMPGNNTRGVSRKIVEE 144
Query: 343 -ERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER RL I K L PEGFG+ +RT G + L DL L+ WKNI + A
Sbjct: 145 DERKRLVGILKDLTIPEGFGMIVRTAGKGATKTLLTSDLRYLMRVWKNIDKLA------- 197
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+E P LL++ + ++DYF + ++++D+P TY EV ++++ IAP + V
Sbjct: 198 ---MENQAPCLLYKEQSLAVRSLRDYFTTDITEILIDNPDTYKEVLNFIEMIAPKQKNIV 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
L+ P+F K+ +EE+I+++ + VPL +GG LVIEQTEALVSIDVN G +S
Sbjct: 255 RLFKSEKPIFTKYQLEEQISSIYKREVPLKSGGFLVIEQTEALVSIDVNSGKST--KKNS 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA+++AR+LRLRD+GG+IVVDFIDM + +K + + +KK ++ D++
Sbjct: 313 IEETAFHTNLEAAEEVARQLRLRDMGGLIVVDFIDMKERRHKADITKTMKKYLKTDKAKT 372
Query: 581 KVSELSRHGLMEITRKR 597
KV ++ GL+E++R+R
Sbjct: 373 KVGGITAFGLLEMSRQR 389
>gi|299771718|ref|YP_003733744.1| Ribonuclease E(RNase E) [Acinetobacter oleivorans DR1]
gi|298701806|gb|ADI92371.1| Ribonuclease E(RNase E) [Acinetobacter oleivorans DR1]
Length = 1116
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|422923329|ref|ZP_16956485.1| ribonuclease E [Vibrio cholerae BJG-01]
gi|341644186|gb|EGS68421.1| ribonuclease E [Vibrio cholerae BJG-01]
Length = 1049
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|254481998|ref|ZP_05095240.1| ribonuclease, Rne/Rng family protein [marine gamma proteobacterium
HTCC2148]
gi|214037688|gb|EEB78353.1| ribonuclease, Rne/Rng family protein [marine gamma proteobacterium
HTCC2148]
Length = 920
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 181/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++GT++IVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R+ L+
Sbjct: 94 VKEGTEIIVQVDKEERGNKGAALTTFISLAGRYMVLMPNNPRAGGISRRIDGDDRSELRE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G G+ IRT G S EELQ DL LL W+ I E + A
Sbjct: 154 ALSALEIPNGMGVIIRTAGVGRSSEELQWDLNYLLQLWEKITEANNESKPA--------- 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
LL + + ++DY + + ++++DSP Y + ++ + P ++ +Y+ IP
Sbjct: 205 -TLLFQESNVIIRAIRDYLRDDIDQVLIDSPEAYQQADDFISQVMPQFKSKLRVYEDSIP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F++F IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 264 MFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGKDIEETALKT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V ++ A+ DR+ V+V +SR
Sbjct: 322 NLEAADEVARQLRLRDMGGLIVIDFIDMLAAKSQRQVENRMRDALNIDRARVQVGRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|424660544|ref|ZP_18097791.1| ribonuclease E [Vibrio cholerae HE-16]
gi|408050453|gb|EKG85616.1| ribonuclease E [Vibrio cholerae HE-16]
Length = 1049
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|229513686|ref|ZP_04403148.1| ribonuclease E [Vibrio cholerae TMA 21]
gi|229348867|gb|EEO13824.1| ribonuclease E [Vibrio cholerae TMA 21]
Length = 1052
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|384425011|ref|YP_005634369.1| Ribonuclease E [Vibrio cholerae LMA3984-4]
gi|327484564|gb|AEA78971.1| Ribonuclease E [Vibrio cholerae LMA3984-4]
Length = 1052
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|255745222|ref|ZP_05419171.1| ribonuclease E [Vibrio cholera CIRS 101]
gi|262155918|ref|ZP_06029039.1| ribonuclease E [Vibrio cholerae INDRE 91/1]
gi|417817806|ref|ZP_12464435.1| ribonuclease E [Vibrio cholerae HCUF01]
gi|418335047|ref|ZP_12943960.1| ribonuclease E [Vibrio cholerae HC-06A1]
gi|418338660|ref|ZP_12947554.1| ribonuclease E [Vibrio cholerae HC-23A1]
gi|418346582|ref|ZP_12951342.1| ribonuclease E [Vibrio cholerae HC-28A1]
gi|419827001|ref|ZP_14350500.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
CP1033(6)]
gi|421318406|ref|ZP_15768974.1| ribonuclease E [Vibrio cholerae CP1032(5)]
gi|421321796|ref|ZP_15772349.1| ribonuclease E [Vibrio cholerae CP1038(11)]
gi|421333164|ref|ZP_15783641.1| ribonuclease E [Vibrio cholerae CP1046(19)]
gi|421336754|ref|ZP_15787215.1| ribonuclease E [Vibrio cholerae CP1048(21)]
gi|421340182|ref|ZP_15790614.1| ribonuclease E [Vibrio cholerae HC-20A2]
gi|421347841|ref|ZP_15798218.1| ribonuclease E [Vibrio cholerae HC-46A1]
gi|422897133|ref|ZP_16934582.1| ribonuclease E [Vibrio cholerae HC-40A1]
gi|422903333|ref|ZP_16938308.1| ribonuclease E [Vibrio cholerae HC-48A1]
gi|422907217|ref|ZP_16942020.1| ribonuclease E [Vibrio cholerae HC-70A1]
gi|422914064|ref|ZP_16948570.1| ribonuclease E [Vibrio cholerae HFU-02]
gi|422926270|ref|ZP_16959284.1| ribonuclease E [Vibrio cholerae HC-38A1]
gi|423145590|ref|ZP_17133184.1| ribonuclease E [Vibrio cholerae HC-19A1]
gi|423150266|ref|ZP_17137580.1| ribonuclease E [Vibrio cholerae HC-21A1]
gi|423154084|ref|ZP_17141265.1| ribonuclease E [Vibrio cholerae HC-22A1]
gi|423157169|ref|ZP_17144262.1| ribonuclease E [Vibrio cholerae HC-32A1]
gi|423160739|ref|ZP_17147679.1| ribonuclease E [Vibrio cholerae HC-33A2]
gi|423731577|ref|ZP_17704880.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-17A1]
gi|423768863|ref|ZP_17713009.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-50A2]
gi|423895467|ref|ZP_17727214.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-62A1]
gi|423930904|ref|ZP_17731607.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-77A1]
gi|424006808|ref|ZP_17749778.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-37A1]
gi|424024790|ref|ZP_17764441.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-62B1]
gi|424027676|ref|ZP_17767279.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-69A1]
gi|424586951|ref|ZP_18026530.1| ribonuclease E [Vibrio cholerae CP1030(3)]
gi|424595599|ref|ZP_18034920.1| ribonuclease E [Vibrio cholerae CP1040(13)]
gi|424599517|ref|ZP_18038696.1| ribonuclease E [Vibrio Cholerae CP1044(17)]
gi|424617819|ref|ZP_18056491.1| ribonuclease E [Vibrio cholerae HC-42A1]
gi|424622604|ref|ZP_18061109.1| ribonuclease E [Vibrio cholerae HC-47A1]
gi|424653332|ref|ZP_18090712.1| ribonuclease E [Vibrio cholerae HC-57A2]
gi|424657156|ref|ZP_18094441.1| ribonuclease E [Vibrio cholerae HC-81A2]
gi|440710227|ref|ZP_20890878.1| ribonuclease E [Vibrio cholerae 4260B]
gi|443504387|ref|ZP_21071345.1| ribonuclease E [Vibrio cholerae HC-64A1]
gi|443508285|ref|ZP_21075048.1| ribonuclease E [Vibrio cholerae HC-65A1]
gi|443512127|ref|ZP_21078765.1| ribonuclease E [Vibrio cholerae HC-67A1]
gi|443515685|ref|ZP_21082196.1| ribonuclease E [Vibrio cholerae HC-68A1]
gi|443519478|ref|ZP_21085874.1| ribonuclease E [Vibrio cholerae HC-71A1]
gi|443524368|ref|ZP_21090581.1| ribonuclease E [Vibrio cholerae HC-72A2]
gi|443535765|ref|ZP_21101642.1| ribonuclease E [Vibrio cholerae HC-80A1]
gi|443539308|ref|ZP_21105162.1| ribonuclease E [Vibrio cholerae HC-81A1]
gi|449055547|ref|ZP_21734215.1| Ribonuclease E [Vibrio cholerae O1 str. Inaba G4222]
gi|255737052|gb|EET92448.1| ribonuclease E [Vibrio cholera CIRS 101]
gi|262030229|gb|EEY48872.1| ribonuclease E [Vibrio cholerae INDRE 91/1]
gi|340037529|gb|EGQ98504.1| ribonuclease E [Vibrio cholerae HCUF01]
gi|341620977|gb|EGS46729.1| ribonuclease E [Vibrio cholerae HC-70A1]
gi|341621177|gb|EGS46925.1| ribonuclease E [Vibrio cholerae HC-48A1]
gi|341621923|gb|EGS47609.1| ribonuclease E [Vibrio cholerae HC-40A1]
gi|341637288|gb|EGS61976.1| ribonuclease E [Vibrio cholerae HFU-02]
gi|341646052|gb|EGS70170.1| ribonuclease E [Vibrio cholerae HC-38A1]
gi|356417071|gb|EHH70690.1| ribonuclease E [Vibrio cholerae HC-06A1]
gi|356418258|gb|EHH71861.1| ribonuclease E [Vibrio cholerae HC-21A1]
gi|356422804|gb|EHH76273.1| ribonuclease E [Vibrio cholerae HC-19A1]
gi|356428644|gb|EHH81870.1| ribonuclease E [Vibrio cholerae HC-22A1]
gi|356430302|gb|EHH83511.1| ribonuclease E [Vibrio cholerae HC-23A1]
gi|356432887|gb|EHH86082.1| ribonuclease E [Vibrio cholerae HC-28A1]
gi|356439443|gb|EHH92412.1| ribonuclease E [Vibrio cholerae HC-32A1]
gi|356445480|gb|EHH98284.1| ribonuclease E [Vibrio cholerae HC-33A2]
gi|395916664|gb|EJH27494.1| ribonuclease E [Vibrio cholerae CP1032(5)]
gi|395918790|gb|EJH29614.1| ribonuclease E [Vibrio cholerae CP1038(11)]
gi|395928566|gb|EJH39319.1| ribonuclease E [Vibrio cholerae CP1046(19)]
gi|395931853|gb|EJH42597.1| ribonuclease E [Vibrio cholerae CP1048(21)]
gi|395939465|gb|EJH50147.1| ribonuclease E [Vibrio cholerae HC-20A2]
gi|395942420|gb|EJH53096.1| ribonuclease E [Vibrio cholerae HC-46A1]
gi|395959227|gb|EJH69670.1| ribonuclease E [Vibrio cholerae HC-57A2]
gi|395961930|gb|EJH72239.1| ribonuclease E [Vibrio cholerae HC-42A1]
gi|395970718|gb|EJH80458.1| ribonuclease E [Vibrio cholerae HC-47A1]
gi|395972948|gb|EJH82522.1| ribonuclease E [Vibrio cholerae CP1030(3)]
gi|408031979|gb|EKG68579.1| ribonuclease E [Vibrio cholerae CP1040(13)]
gi|408041534|gb|EKG77640.1| ribonuclease E [Vibrio Cholerae CP1044(17)]
gi|408053163|gb|EKG88183.1| ribonuclease E [Vibrio cholerae HC-81A2]
gi|408607791|gb|EKK81194.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
CP1033(6)]
gi|408624199|gb|EKK97151.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-17A1]
gi|408633607|gb|EKL05932.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-50A2]
gi|408654336|gb|EKL25478.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-77A1]
gi|408655267|gb|EKL26392.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-62A1]
gi|408845416|gb|EKL85532.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-37A1]
gi|408870235|gb|EKM09515.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-62B1]
gi|408878979|gb|EKM17972.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-69A1]
gi|439974450|gb|ELP50627.1| ribonuclease E [Vibrio cholerae 4260B]
gi|443431332|gb|ELS73884.1| ribonuclease E [Vibrio cholerae HC-64A1]
gi|443435227|gb|ELS81371.1| ribonuclease E [Vibrio cholerae HC-65A1]
gi|443439110|gb|ELS88825.1| ribonuclease E [Vibrio cholerae HC-67A1]
gi|443443095|gb|ELS96397.1| ribonuclease E [Vibrio cholerae HC-68A1]
gi|443446896|gb|ELT03552.1| ribonuclease E [Vibrio cholerae HC-71A1]
gi|443449702|gb|ELT09993.1| ribonuclease E [Vibrio cholerae HC-72A2]
gi|443461041|gb|ELT32115.1| ribonuclease E [Vibrio cholerae HC-80A1]
gi|443465408|gb|ELT40068.1| ribonuclease E [Vibrio cholerae HC-81A1]
gi|448264586|gb|EMB01823.1| Ribonuclease E [Vibrio cholerae O1 str. Inaba G4222]
Length = 1049
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|419837754|ref|ZP_14361192.1| ribonuclease E [Vibrio cholerae HC-46B1]
gi|421344543|ref|ZP_15794946.1| ribonuclease E [Vibrio cholerae HC-43B1]
gi|422910880|ref|ZP_16945508.1| ribonuclease E [Vibrio cholerae HE-09]
gi|423735708|ref|ZP_17708904.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-41B1]
gi|424010046|ref|ZP_17752982.1| ribonuclease E [Vibrio cholerae HC-44C1]
gi|341632754|gb|EGS57611.1| ribonuclease E [Vibrio cholerae HE-09]
gi|395940623|gb|EJH51304.1| ribonuclease E [Vibrio cholerae HC-43B1]
gi|408629566|gb|EKL02247.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-41B1]
gi|408856302|gb|EKL95997.1| ribonuclease E [Vibrio cholerae HC-46B1]
gi|408863574|gb|EKM03051.1| ribonuclease E [Vibrio cholerae HC-44C1]
Length = 1049
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|417825280|ref|ZP_12471868.1| ribonuclease E [Vibrio cholerae HE48]
gi|340046765|gb|EGR07695.1| ribonuclease E [Vibrio cholerae HE48]
Length = 1049
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|336123711|ref|YP_004565759.1| ribonuclease E [Vibrio anguillarum 775]
gi|335341434|gb|AEH32717.1| Ribonuclease E [Vibrio anguillarum 775]
Length = 1026
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 208/380 (54%), Gaps = 36/380 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKS---EVPDDSHTSHPQGTKDS 279
N+ I EP EA F D+ E +GF P K E D +T QG +
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDGYTY--QGRPNI 90
Query: 280 KHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRK 338
K +++G +VIVQV KE G+KG LT + L + +L+ + R G +SR+
Sbjct: 91 KEA--------LKEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142
Query: 339 ITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAA 397
I G ERT LK +L+ P+G GL +RT G S EEL+ DL LL+ W I +
Sbjct: 143 IEGDERTELKTALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQ------ 196
Query: 398 LAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLC 457
A+D P+L+H+ + ++DY + ++++DS Y +++ + PD
Sbjct: 197 -ASDLR---PAPLLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFV 252
Query: 458 DRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGH 517
RV+ YD +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N
Sbjct: 253 SRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--K 310
Query: 518 GSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDR 577
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRLDR 370
Query: 578 SMVKVSELSRHGLMEITRKR 597
+ V++ +SR GL+E++R+R
Sbjct: 371 ARVQIGRISRFGLLEMSRQR 390
>gi|415719041|ref|ZP_11467578.1| ribonuclease G [Gardnerella vaginalis 1500E]
gi|388059468|gb|EIK82200.1| ribonuclease G [Gardnerella vaginalis 1500E]
Length = 1086
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 622 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 681
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E +QKDLE L+ W I AK +E + G
Sbjct: 682 AIVSKIAPKDMGIIIRTAAEGASEEAIQKDLESLVKQWDRI--EAKR-----EEYLHGKR 734
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + + YL+ +APDL +VE +D
Sbjct: 735 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGDGVHQRINEYLEMMAPDLLSKVEYWDPAEH 794
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V L +GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 795 EGKDIFDKWQIDSQLRKGMERQVYLQSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 853
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 854 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 913
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 914 VTSLGLVQMTRKR 926
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG + ++P+M AFV+IG +R ++
Sbjct: 548 QISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVL 601
>gi|429886538|ref|ZP_19368090.1| Ribonuclease E [Vibrio cholerae PS15]
gi|429226580|gb|EKY32685.1| Ribonuclease E [Vibrio cholerae PS15]
Length = 1049
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|395782038|ref|ZP_10462447.1| rne/Rng family ribonuclease [Bartonella rattimassiliensis 15908]
gi|395419889|gb|EJF86175.1| rne/Rng family ribonuclease [Bartonella rattimassiliensis 15908]
Length = 873
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 161/528 (30%), Positives = 264/528 (50%), Gaps = 46/528 (8%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHREETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDV- 192
G +R + + P R A LEE +N + N+ DV
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL----------ALLEEE----ENAAVGENSADVV 106
Query: 193 AEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDG 252
EA +++ + + +++++G DV N +D + E G + +
Sbjct: 107 TEAVTKNKRLSRKTKKNQKNNGIAADVE------NDVAFEDVTIDNTDEILNAGVSYDEI 160
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E G + E+P T K K +++ ++VQV+KE G KG
Sbjct: 161 EMVGVEDIREEIP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAA 210
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAG 369
LT Y L R+ +L+ + R G +SRKIT V+ R RLK I K L P+G G+ +RT A
Sbjct: 211 LTTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLKEIVKELLVPKGMGVILRTAGAN 270
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
+ E+++D E L+ W I + ++ P L+H ++D +N+
Sbjct: 271 RTKAEIKRDYEYLMRLWDTIR----------NLTLQSTAPCLIHEESNLIKRAIRDLYNK 320
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
+ +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V L
Sbjct: 321 NISEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLQPQVSL 380
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549
+GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+I
Sbjct: 381 KSGGYLVINQTEALVAIDVNSGRST--REFSVEKTALQTNLEAAEEIARQLRLRDLAGLI 438
Query: 550 VVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
V+DFIDM ++ N RLV +++K ++ DR+ ++V +S GL+E++R+R
Sbjct: 439 VIDFIDMLEERNVRLVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQR 486
>gi|54023319|ref|YP_117561.1| hypothetical protein nfa13520 [Nocardia farcinica IFM 10152]
gi|54014827|dbj|BAD56197.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 1145
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 189/308 (61%), Gaps = 10/308 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KG LT L RF + + G+SRK+ ER RLK I
Sbjct: 488 LKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEI 547
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + P G+ IRT + G S EL +D+E L STW++I E A +G P
Sbjct: 548 LREIVPPDAGVIIRTASEGVSEAELARDVERLQSTWRSIQEQADK---------DGGAPK 598
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-IPL 469
L+ + +++D FNE ++V++ R + V +Y++ +APDL RV ++ + +
Sbjct: 599 TLYEEPDLLVKVIRDLFNEDFSQLVIEGERAWTTVQNYIRTVAPDLLARVSRHENNGVDV 658
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+ + I+E++ L ++V LP+GG+LVI++TEA+ IDVN G GS+ E+ + N
Sbjct: 659 FETYRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGSNLEETVTRNN 718
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R++RLRDIGG+IVVDFIDM +SN+ LV + +A+ RDR+ +VSE++ G
Sbjct: 719 LEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLG 778
Query: 590 LMEITRKR 597
L+++TRK+
Sbjct: 779 LVQMTRKK 786
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ ++AVLED LVE + +VYLG V ++P+M AFV+IG R ++
Sbjct: 410 ITQVAVLEDNILVEHFVTDTGQPSMVGNVYLGKVQNVLPSMEAAFVDIGRGRNGVL 465
>gi|410632030|ref|ZP_11342701.1| ribonuclease E [Glaciecola arctica BSs20135]
gi|410148566|dbj|GAC19568.1| ribonuclease E [Glaciecola arctica BSs20135]
Length = 968
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/377 (36%), Positives = 206/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ D H GF P K + + T PQG + +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-GADRH------GFLPLK----EIARTYFPQGYR-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G VSR+I G
Sbjct: 85 PNIKEV--IREGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGVSRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G + EEL DL+ L+S W I E A S
Sbjct: 143 DERTELKAALGGLDLPDGMGLIVRTAGVGKTTEELAYDLDYLVSGWGRIKEMADSRP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + +++ + PD +RV
Sbjct: 200 -------APFLIHQESDVVVRAIRDYLRRDIGEILIDNAVVHERALKHVEQMRPDYANRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL+SID+N GS
Sbjct: 253 KLYSGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALISIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDAGGLVVIDFIDMTPVRHQREVENRMKDAVRGDRARV 370
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 371 QLGRISRFGLLEMSRQR 387
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAD 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|229528952|ref|ZP_04418342.1| ribonuclease E [Vibrio cholerae 12129(1)]
gi|229332726|gb|EEN98212.1| ribonuclease E [Vibrio cholerae 12129(1)]
Length = 1052
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|408501670|ref|YP_006865589.1| ribonuclease G [Bifidobacterium asteroides PRL2011]
gi|408466494|gb|AFU72023.1| ribonuclease G [Bifidobacterium asteroides PRL2011]
Length = 889
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 190/313 (60%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK+ ER+RLK
Sbjct: 485 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLPDRERSRLK 544
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E L KDLE L W I + K E + G
Sbjct: 545 SIVSRVAPKDMGVIIRTAAEGASEEALTKDLENLQRQWSKIEDKRK-------EFLHGKR 597
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K+VV Y V +YL+ +APDL +++E +D
Sbjct: 598 PKLLQGEPDVAIRVVRDIFNDDFAKLVVQGEGVYERVRNYLETMAPDLEEKLEHWDPAEH 657
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FD+++I+ ++ + ++V LP+GGSLVI++TEA+ +IDVN G G G S E+
Sbjct: 658 QGKDVFDRWSIDSQLRKGMERQVYLPSGGSLVIDRTEAMTTIDVNTGR-FIGKGKSLEET 716
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG+I++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 717 VTRCNLEASEEIARQLRLRDIGGMIMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 776
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 777 VTSLGLVQMTRKR 789
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N V+ ++++ Q I+V+ED+ LVE + ++ ++YL
Sbjct: 382 QSQLVEQDFLARREN-VNRLMVVREKEHHTQ-ISVIEDDILVEHYVSDIQEVSTVGNIYL 439
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 440 GRVQNVLPSMEAAFVDIGQARNGVL 464
>gi|357384591|ref|YP_004899315.1| cytoplasmic axial filament protein CafA and ribonuclease G
[Pelagibacterium halotolerans B2]
gi|351593228|gb|AEQ51565.1| cytoplasmic axial filament protein CafA and ribonuclease G
[Pelagibacterium halotolerans B2]
Length = 864
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 156/524 (29%), Positives = 251/524 (47%), Gaps = 71/524 (13%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L++++ RI V +L E E + ++YL VT++ P++ AFV G +
Sbjct: 6 MLVDATHPEETRIVVTTGNRLEEFDFESAERRQLRGNIYLAKVTRVEPSLQAAFVEYGGN 65
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADS 197
R + + P R A+ D + D+A+ D
Sbjct: 66 RHGFLAFSEIHPDYYQIPVADR----------------EALMRDEEEAHEEEADLADDDE 109
Query: 198 QDDLVQFEHNDDE-EHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNG 256
D E +DD E +GDD D K V E EGD D +
Sbjct: 110 TD---ATESDDDAAEDNGDDLDTPRETKKV--------------EQIGEGDALEDLQ--- 149
Query: 257 FFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAY 316
E P + + K +++ ++VQVVKE G KG LT Y
Sbjct: 150 ------ERPRRNQRRY-------------KIQEVIKRRQVLLVQVVKEERGNKGAALTTY 190
Query: 317 PKLRSRFWILITSCDRIG-VSRKIT-GVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLE 373
L R+ +L+ + R G +SRKIT +R RLK IA L+ P+G G+ +RT A +
Sbjct: 191 LSLAGRYSVLMPNTARGGGISRKITSAADRKRLKEIATDLEVPQGMGVILRTAGASRTKA 250
Query: 374 ELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKK 433
E+++D E L+ W+N+ +E + P L++ ++D +N+ + +
Sbjct: 251 EVKRDFEYLMRLWENVRTLT----------LESSAPCLVYEEGSLIKRTIRDLYNKDISE 300
Query: 434 MVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGG 493
++V Y E +++ I P V++Y P+F +FN+E ++++M +V LP+GG
Sbjct: 301 VLVSGEAGYREAKDFMRMIMPSHSKNVQIYKDDAPIFSRFNVESQLDSMFHPQVTLPSGG 360
Query: 494 SLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDF 553
+VI TEALVSIDVN G H + E L NL AA++I+R+LRLRD+ G+IV+DF
Sbjct: 361 YIVINPTEALVSIDVNSGRATKEH--NIEDTALQTNLEAAEEISRQLRLRDLAGLIVIDF 418
Query: 554 IDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
IDM + N R V +++K ++ DR+ ++V +S GLME++R+R
Sbjct: 419 IDMEERRNNRAVEKKLKDCLKNDRARIQVGHISHFGLMEMSRQR 462
>gi|254226964|ref|ZP_04920528.1| ribonuclease E [Vibrio cholerae V51]
gi|125620504|gb|EAZ48874.1| ribonuclease E [Vibrio cholerae V51]
Length = 1052
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|15642032|ref|NP_231664.1| ribonuclease E [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121591522|ref|ZP_01678786.1| ribonuclease E [Vibrio cholerae 2740-80]
gi|121729886|ref|ZP_01682313.1| ribonuclease E [Vibrio cholerae V52]
gi|153823923|ref|ZP_01976590.1| ribonuclease E [Vibrio cholerae B33]
gi|227082157|ref|YP_002810708.1| ribonuclease E [Vibrio cholerae M66-2]
gi|229507881|ref|ZP_04397386.1| ribonuclease E [Vibrio cholerae BX 330286]
gi|229511884|ref|ZP_04401363.1| ribonuclease E [Vibrio cholerae B33]
gi|229519020|ref|ZP_04408463.1| ribonuclease E [Vibrio cholerae RC9]
gi|229607426|ref|YP_002878074.1| ribonuclease E [Vibrio cholerae MJ-1236]
gi|254849117|ref|ZP_05238467.1| ribonuclease E [Vibrio cholerae MO10]
gi|298497941|ref|ZP_07007748.1| ribonuclease E [Vibrio cholerae MAK 757]
gi|360035912|ref|YP_004937675.1| ribonuclease E [Vibrio cholerae O1 str. 2010EL-1786]
gi|379741855|ref|YP_005333824.1| ribonuclease E [Vibrio cholerae IEC224]
gi|417814068|ref|ZP_12460721.1| ribonuclease E [Vibrio cholerae HC-49A2]
gi|418350341|ref|ZP_12955072.1| ribonuclease E [Vibrio cholerae HC-43A1]
gi|418356143|ref|ZP_12958862.1| ribonuclease E [Vibrio cholerae HC-61A1]
gi|421325597|ref|ZP_15776121.1| ribonuclease E [Vibrio cholerae CP1041(14)]
gi|421329256|ref|ZP_15779766.1| ribonuclease E [Vibrio cholerae CP1042(15)]
gi|423165562|ref|ZP_17152289.1| ribonuclease E [Vibrio cholerae HC-48B2]
gi|424003019|ref|ZP_17746094.1| ribonuclease E [Vibrio cholerae HC-17A2]
gi|424645567|ref|ZP_18083303.1| ribonuclease E [Vibrio cholerae HC-56A2]
gi|443531965|ref|ZP_21097979.1| ribonuclease E [Vibrio cholerae HC-7A1]
gi|9656575|gb|AAF95178.1| ribonuclease E [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121546621|gb|EAX56812.1| ribonuclease E [Vibrio cholerae 2740-80]
gi|121628376|gb|EAX60877.1| ribonuclease E [Vibrio cholerae V52]
gi|126518555|gb|EAZ75778.1| ribonuclease E [Vibrio cholerae B33]
gi|227010045|gb|ACP06257.1| ribonuclease E [Vibrio cholerae M66-2]
gi|229343709|gb|EEO08684.1| ribonuclease E [Vibrio cholerae RC9]
gi|229351849|gb|EEO16790.1| ribonuclease E [Vibrio cholerae B33]
gi|229355386|gb|EEO20307.1| ribonuclease E [Vibrio cholerae BX 330286]
gi|229370081|gb|ACQ60504.1| ribonuclease E [Vibrio cholerae MJ-1236]
gi|254844822|gb|EET23236.1| ribonuclease E [Vibrio cholerae MO10]
gi|297542274|gb|EFH78324.1| ribonuclease E [Vibrio cholerae MAK 757]
gi|340036554|gb|EGQ97530.1| ribonuclease E [Vibrio cholerae HC-49A2]
gi|356444837|gb|EHH97646.1| ribonuclease E [Vibrio cholerae HC-43A1]
gi|356450706|gb|EHI03420.1| ribonuclease E [Vibrio cholerae HC-48B2]
gi|356452641|gb|EHI05320.1| ribonuclease E [Vibrio cholerae HC-61A1]
gi|356647066|gb|AET27121.1| ribonuclease E [Vibrio cholerae O1 str. 2010EL-1786]
gi|378795365|gb|AFC58836.1| ribonuclease E [Vibrio cholerae IEC224]
gi|395917435|gb|EJH28263.1| ribonuclease E [Vibrio cholerae CP1041(14)]
gi|395927790|gb|EJH38553.1| ribonuclease E [Vibrio cholerae CP1042(15)]
gi|395958636|gb|EJH69115.1| ribonuclease E [Vibrio cholerae HC-56A2]
gi|408846189|gb|EKL86301.1| ribonuclease E [Vibrio cholerae HC-17A2]
gi|443457355|gb|ELT24752.1| ribonuclease E [Vibrio cholerae HC-7A1]
Length = 1052
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|417821375|ref|ZP_12467989.1| ribonuclease E [Vibrio cholerae HE39]
gi|423956539|ref|ZP_17735093.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae HE-40]
gi|423985327|ref|ZP_17738644.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae HE-46]
gi|340039006|gb|EGQ99980.1| ribonuclease E [Vibrio cholerae HE39]
gi|408657455|gb|EKL28535.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae HE-40]
gi|408663931|gb|EKL34776.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae HE-46]
Length = 1049
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|415725829|ref|ZP_11470380.1| ribonuclease G [Gardnerella vaginalis 00703Dmash]
gi|388064165|gb|EIK86728.1| ribonuclease G [Gardnerella vaginalis 00703Dmash]
Length = 1069
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 605 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 664
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E +QKDLE L+ W I AK +E + G
Sbjct: 665 AIVSKIAPKDMGIIIRTAAEGASEEAIQKDLESLVKQWDRI--EAKR-----EEYLHGKR 717
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + + YL+ +APDL +VE +D
Sbjct: 718 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVHQRINEYLEMMAPDLLSKVEYWDPAEH 777
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V L +GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 778 EGKDIFDKWQIDSQLRKGMERQVYLQSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 836
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 837 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 896
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 897 VTSLGLVQMTRKR 909
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG + ++P+M AFV+IG +R ++
Sbjct: 531 QISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVL 584
>gi|365539273|ref|ZP_09364448.1| ribonuclease E [Vibrio ordalii ATCC 33509]
Length = 1037
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 208/380 (54%), Gaps = 36/380 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKS---EVPDDSHTSHPQGTKDS 279
N+ I EP EA F D+ E +GF P K E D +T QG +
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDGYTY--QGRPNI 90
Query: 280 KHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRK 338
K +++G +VIVQV KE G+KG LT + L + +L+ + R G +SR+
Sbjct: 91 KEA--------LKEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142
Query: 339 ITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAA 397
I G ERT LK +L+ P+G GL +RT G S EEL+ DL LL+ W I +
Sbjct: 143 IEGDERTELKTALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQ------ 196
Query: 398 LAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLC 457
A+D P+L+H+ + ++DY + ++++DS Y +++ + PD
Sbjct: 197 -ASDLR---PAPLLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFV 252
Query: 458 DRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGH 517
RV+ YD +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N
Sbjct: 253 SRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--K 310
Query: 518 GSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDR 577
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRLDR 370
Query: 578 SMVKVSELSRHGLMEITRKR 597
+ V++ +SR GL+E++R+R
Sbjct: 371 ARVQIGRISRFGLLEMSRQR 390
>gi|153827553|ref|ZP_01980220.1| ribonuclease E, partial [Vibrio cholerae MZO-2]
gi|149738477|gb|EDM52873.1| ribonuclease E [Vibrio cholerae MZO-2]
Length = 957
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|424591694|ref|ZP_18031120.1| ribonuclease E [Vibrio cholerae CP1037(10)]
gi|408030995|gb|EKG67638.1| ribonuclease E [Vibrio cholerae CP1037(10)]
Length = 1049
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|297579534|ref|ZP_06941462.1| ribonuclease E [Vibrio cholerae RC385]
gi|297537128|gb|EFH75961.1| ribonuclease E [Vibrio cholerae RC385]
Length = 1052
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|269125790|ref|YP_003299160.1| ribonuclease, Rne/Rng family [Thermomonospora curvata DSM 43183]
gi|268310748|gb|ACY97122.1| ribonuclease, Rne/Rng family [Thermomonospora curvata DSM 43183]
Length = 1041
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 187/307 (60%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK +
Sbjct: 597 LKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPDGSMTGISRKLPDKERSRLKQV 656
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P+ G+ +RT A G + EEL D+ L + W++I + AK+A+ P
Sbjct: 657 LKKIMPDNAGVIVRTAAEGATEEELAGDIARLSAQWEHIHKQAKTAS----------APA 706
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LLH T+ +V+D FNE K+VV + V+ Y+ +AP L +R+E ++ +
Sbjct: 707 LLHGEPDLTIRVVRDIFNEDFSKLVVSGDTAWDMVSEYVGYVAPHLAERLERWESDQDVL 766
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 767 SAYRIDEQIAKALERKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGQGGNLEETVTRNNL 825
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 826 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLLECLSRDRTKHQVAEVTSLGL 885
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 886 VQMTRKR 892
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
++I++ F++ + + QR IAVLED LVE ++ +VYLG V
Sbjct: 493 AVITESEFLARRESVERVMVICQRGERTQIAVLEDGVLVEHYVDRASHQSYVGNVYLGKV 552
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 553 QNVLPSMEAAFVDIGKGRNAVL 574
>gi|254286848|ref|ZP_04961801.1| ribonuclease E [Vibrio cholerae AM-19226]
gi|150423139|gb|EDN15087.1| ribonuclease E [Vibrio cholerae AM-19226]
Length = 1051
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|192361431|ref|YP_001982146.1| ribonuclease, Rne/Rng family protein [Cellvibrio japonicus Ueda107]
gi|190687596|gb|ACE85274.1| ribonuclease, Rne/Rng family protein [Cellvibrio japonicus Ueda107]
Length = 947
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 202/363 (55%), Gaps = 26/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K E+ + + +P D + K +++GT+
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EISREYFSRNPGDNNDGRI----KIKDVLKEGTE 101
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L R+ +L+ + R G +SR+I G +R LK + +
Sbjct: 102 VIVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEDRAELKDALGEIE 161
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G G+ IRT G S EELQ DL LL W++I AK + P L +
Sbjct: 162 VPQGMGVIIRTAGVGRSAEELQWDLNYLLQLWESIENAAKRSP----------APEFLFQ 211
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + V +++VD+ + ++Q + P+ +V+LY IPLF+++
Sbjct: 212 ESNVIIRAIRDYLRQDVGEVIVDNKEAFDLAAGFIQQVMPNYRSKVKLYQDDIPLFNRYQ 271
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALV+ID+N G E+ L NL AA
Sbjct: 272 IESQIETAFQREVKLPSGGSIVIDVTEALVAIDINSSRAT--KGGDIEETALQTNLEAAD 329
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM N+R V ++ A+ DR+ V++ +SR GL+E++
Sbjct: 330 EIARQLRLRDMGGLVVIDFIDMQPVRNQREVENRMRDALMMDRARVQIGRISRFGLLEMS 389
Query: 595 RKR 597
R+R
Sbjct: 390 RQR 392
>gi|153216572|ref|ZP_01950523.1| ribonuclease E [Vibrio cholerae 1587]
gi|124114201|gb|EAY33021.1| ribonuclease E [Vibrio cholerae 1587]
Length = 1052
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|424613842|ref|ZP_18052630.1| ribonuclease E, partial [Vibrio cholerae HC-41A1]
gi|408012687|gb|EKG50459.1| ribonuclease E, partial [Vibrio cholerae HC-41A1]
Length = 772
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|424602237|ref|ZP_18041378.1| ribonuclease E [Vibrio cholerae CP1047(20)]
gi|395975383|gb|EJH84874.1| ribonuclease E [Vibrio cholerae CP1047(20)]
Length = 818
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|359777599|ref|ZP_09280879.1| putative ribonuclease [Arthrobacter globiformis NBRC 12137]
gi|359305139|dbj|GAB14708.1| putative ribonuclease [Arthrobacter globiformis NBRC 12137]
Length = 1089
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 186/307 (60%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER RLK I
Sbjct: 487 LKSGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDVERNRLKRI 546
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K PE G+ +RT A G S EEL D+ L + W+ I AKS + A P
Sbjct: 547 LKDRLPEDAGVIVRTAAEGASEEELTHDINRLRAQWEGIESQAKSTKVLA--------PE 598
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + +Y+ +APDL R+E + K +F
Sbjct: 599 LLYGEPDLTIKVVRDVFNEDFSKLIVSGDEAWDTIEAYVTYVAPDLVGRLEKWTKDEDIF 658
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I+ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 659 SAWRIDEQIHKALDRKVFLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNL 717
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA+++ R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 718 EAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGL 777
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 778 VQMTRKR 784
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
++I++ F++ ++ + QR I VLED L E + + + +VYLG V
Sbjct: 383 TVITEAEFLARRESVDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKV 442
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 443 QNVLPSMEAAFVDIGRGRNAVL 464
>gi|339479936|gb|ABE96403.1| Ribonuclease G [Bifidobacterium breve UCC2003]
Length = 1020
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 628 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 687
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I +AK +E G
Sbjct: 688 GIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 740
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 741 PKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 800
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 801 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 859
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 860 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 919
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 920 VTSLGLVQMTRKR 932
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 525 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNILVEHYVSDIQEVQTVGNIYL 582
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 583 GRVQNVLPSMEAAFVDIGQARNGVL 607
>gi|415711903|ref|ZP_11464439.1| ribonuclease G [Gardnerella vaginalis 55152]
gi|388057636|gb|EIK80461.1| ribonuclease G [Gardnerella vaginalis 55152]
Length = 1155
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 656 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 715
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G + + ++KDLE L+ W+ I AK +E + G
Sbjct: 716 AIVSKIAPKDMGIIIRTAADGATEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 768
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 769 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 828
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 829 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 887
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 888 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 947
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 948 VTSLGLVQMTRKR 960
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 555 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 612
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 613 VQNVLPSMEAAFVDIGQARNGVL 635
>gi|319898066|ref|YP_004136263.1| ribonuclease e, RNA-binding protein [Haemophilus influenzae F3031]
gi|317433572|emb|CBY81956.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3031]
Length = 932
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 201/367 (54%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 93 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 153 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 203 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +S GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISHFGL 380
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 381 LEMSRQR 387
>gi|354603742|ref|ZP_09021736.1| hypothetical protein HMPREF9450_00651 [Alistipes indistinctus YIT
12060]
gi|353348667|gb|EHB92938.1| hypothetical protein HMPREF9450_00651 [Alistipes indistinctus YIT
12060]
Length = 514
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 188/317 (59%), Gaps = 12/317 (3%)
Query: 290 QVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLK 348
+ G ++VQV KE + TKGP LT+ L R +LI +I +S+KI + ER RLK
Sbjct: 114 HIASGQTILVQVAKEAISTKGPRLTSDISLAGRNVVLIPFSGKISISQKIRSNEERNRLK 173
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
IA + P +G+ IRT AAGH E++++D+ L+ W+ ME+ K +
Sbjct: 174 KIASGVLPNNYGVIIRTAAAGHPAEDVEQDILALVHKWEKAMENLK----------QQNA 223
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+ M +T ++++D N + +D TY EV Y++ I P+ V+LY +P
Sbjct: 224 PSLVLGEMNRTTTMIRDLLNGSFSNIYIDDQATYEEVRDYIRTIVPEKEKIVKLYKGNVP 283
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+FD F++ ++I ++ +K V L G L+IE+TEAL +DVN G+ +E+ +DV
Sbjct: 284 IFDNFDVSKQIMSLFAKYVSLRKGAYLIIERTEALHVVDVNSGNRA-KVDDDQERTAMDV 342
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NLAAA +IAR+LRLRD+GGIIV+DFID+ N+ + EE++K + DR+ + LS+
Sbjct: 343 NLAAAAEIARQLRLRDMGGIIVIDFIDLHKSENRNALVEEMRKLMAADRAKHTILPLSKF 402
Query: 589 GLMEITRKRAMMEQKAD 605
GLM+ITR+R E + D
Sbjct: 403 GLMQITRQRVRPETQVD 419
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+ ED++LVEL E +S +Y+G V K++P + AFVN+G+ + + HY
Sbjct: 16 IALFEDKQLVELTKEQSRSGYAVGDIYMGKVKKIMPGLNAAFVNVGHEKDGFI---HY 70
>gi|258621207|ref|ZP_05716241.1| ribonuclease E [Vibrio mimicus VM573]
gi|258586595|gb|EEW11310.1| ribonuclease E [Vibrio mimicus VM573]
Length = 819
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 201/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|270284329|ref|ZP_06193944.1| ribonuclease, Rne/Rng family domain protein [Bifidobacterium
gallicum DSM 20093]
gi|270276653|gb|EFA22507.1| ribonuclease, Rne/Rng family domain protein [Bifidobacterium
gallicum DSM 20093]
Length = 898
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 190/310 (61%), Gaps = 12/310 (3%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIA 351
+ G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK I
Sbjct: 489 RSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSEHERSRLKSIV 548
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
+ P+ G+ IRT A G S E + KDLE L+ W++I AK +E G P L
Sbjct: 549 AKVAPKDMGVIIRTAAEGASEEAITKDLENLMHQWEHIT--AKR-----EEFRNGKRPKL 601
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD----KRI 467
L + +V+D FN+ K++V+ Y + YL +APDL ++E +D +
Sbjct: 602 LQGEPDVAIRVVRDIFNDDFSKLIVEGETVYERIAEYLDTMAPDLKAKLEQWDPAEHQGK 661
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
+FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+ +
Sbjct: 662 DVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGRSLEETVTA 720
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
NL AA++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E++
Sbjct: 721 CNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLLECLARDRTKHQVAEVTS 780
Query: 588 HGLMEITRKR 597
GL+++TRKR
Sbjct: 781 LGLVQMTRKR 790
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 412 QISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 465
>gi|395784227|ref|ZP_10464066.1| rne/Rng family ribonuclease [Bartonella melophagi K-2C]
gi|395423982|gb|EJF90170.1| rne/Rng family ribonuclease [Bartonella melophagi K-2C]
Length = 866
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 173/599 (28%), Positives = 290/599 (48%), Gaps = 64/599 (10%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A EE A +N + +D+
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL--------ALLEEEEKAAIDENQA-----DDLV 107
Query: 194 EADSQDDLVQFEHNDDEEH-----DGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDH 248
E Q++ + + H D ++ +SE + + +G + DG D
Sbjct: 108 EEIKQNEKGSRKTKKSKNHSVLSVDSENNIISESIASDDGEEVLDGNVSDD--------- 158
Query: 249 HLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGT 308
D E G + E+P T K K +++ ++VQV+KE G
Sbjct: 159 --DIEMVGAEDALEELP----------TYQRKPVRQYKIQEVIKRRQILLVQVIKEERGN 206
Query: 309 KGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRT 365
KG LT Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT
Sbjct: 207 KGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRT 266
Query: 366 VAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQD 425
A + E+++D E L+ W+ + ++ L + P L++ ++D
Sbjct: 267 AGANRTKVEIKRDYEYLMRLWETV----RTLTLKS------TAPYLVYEEGNLIKRSIRD 316
Query: 426 YFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSK 485
+N+ + +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML
Sbjct: 317 LYNKDINEILVSGDKGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNNIEAQLDKMLQP 376
Query: 486 RVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDI 545
+V L +GG LVI QTEALV+IDVN G H S EK L NL AA++IAR+LRLRD+
Sbjct: 377 QVALKSGGYLVINQTEALVAIDVNSGRSTKEH--SVEKTALQTNLEAAEEIARQLRLRDL 434
Query: 546 GGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR---AMMEQ 602
G+IV+DFIDM ++ N +LV +++K ++ DR+ ++V +S GLME++R+R +++E
Sbjct: 435 AGLIVIDFIDMLENRNIKLVEKKLKDCLKNDRARIQVGRISHFGLMEMSRQRIRVSVLES 494
Query: 603 KADP-------ENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGF 654
P + +S L V + YL S + + V +S++ A +L R
Sbjct: 495 TMQPCPHCAGTGHVRSESSIALHVMRSIEKYLLSNSQYNIIVRTSAVIALYVLNHKRSI 553
>gi|153818441|ref|ZP_01971108.1| ribonuclease E [Vibrio cholerae NCTC 8457]
gi|126511000|gb|EAZ73594.1| ribonuclease E [Vibrio cholerae NCTC 8457]
Length = 963
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|424607209|ref|ZP_18046151.1| ribonuclease E, partial [Vibrio cholerae CP1050(23)]
gi|408042907|gb|EKG78937.1| ribonuclease E, partial [Vibrio cholerae CP1050(23)]
Length = 790
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|116670939|ref|YP_831872.1| ribonuclease [Arthrobacter sp. FB24]
gi|116611048|gb|ABK03772.1| ribonuclease, Rne/Rng family [Arthrobacter sp. FB24]
Length = 1113
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 185/307 (60%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER RLK I
Sbjct: 471 LKSGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDVERNRLKRI 530
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K PE G+ +RT A G S EEL D+ L + W+ I A S + A P
Sbjct: 531 LKDRLPEDAGVIVRTAAEGASEEELTHDINRLRAQWEGIESQATSTKILA--------PE 582
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + +Y+ +APDL R+E + K +F
Sbjct: 583 LLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIEAYVTYVAPDLVGRLEKWTKDTDIF 642
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I+ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 643 AAWRIDEQIHKALDRKVFLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNL 701
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA+++ R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 702 EAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMVECLGRDRTKHQVAEVTSLGL 761
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 762 VQMTRKR 768
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
++I++ F++ ++ + QR I VLED L E + + + +VYLG V
Sbjct: 367 TVITEAEFLARRESVDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKV 426
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 427 QNVLPSMEAAFVDIGRGRNAVL 448
>gi|293610197|ref|ZP_06692498.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427422927|ref|ZP_18913093.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-136]
gi|292827429|gb|EFF85793.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425700027|gb|EKU69618.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-136]
Length = 1107
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|372489070|ref|YP_005028635.1| ribonuclease, Rne/Rng family [Dechlorosoma suillum PS]
gi|359355623|gb|AEV26794.1| ribonuclease, Rne/Rng family [Dechlorosoma suillum PS]
Length = 920
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 214/396 (54%), Gaps = 47/396 (11%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ +I EP EA F ++ E H GF P K +
Sbjct: 26 DLDIESAAKEQRKSNIYKGVITRIEPSLEACFVNYGEERH-------GFLPFK-----EV 73
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
S+ Q D++ + E +++G +VIVQV K+ G KG LT + L R+ +L+
Sbjct: 74 SRSYFQPGVDNRASIKEA----LKEGQEVIVQVEKDERGNKGAALTTFVSLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ER L+ + LQ P G L RT A G + EELQ DL LL W
Sbjct: 130 NNPRGGGVSRRVEGDERAELRDVMDQLQVPGGMSLIARTAAIGRNAEELQWDLNYLLKLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAV-----PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRT 441
E +EGA P L++ + ++DYF + ++++D+
Sbjct: 190 ---------------EAIEGAATSQSGPFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEI 234
Query: 442 YHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTE 501
+ + S++ + P +RV+LY +PLF +F IE +I + S++V LP+GG++VI+ TE
Sbjct: 235 FEQARSFMGTVMPANENRVKLYRDDVPLFSRFQIEHQIESAYSRQVNLPSGGAIVIDHTE 294
Query: 502 ALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSN 561
ALVS+DVN G G E+ L N AA +IAR+LRLRD+GG+IV+DFIDM N
Sbjct: 295 ALVSVDVNSGRST--RGQDIEETALKTNQEAADEIARQLRLRDLGGLIVIDFIDMESQKN 352
Query: 562 KRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+R V ++ A+ DR+ V++ ++SR GLME++R+R
Sbjct: 353 QREVENRLRDALRHDRARVQMGKISRFGLMELSRQR 388
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVNYGEE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K + P
Sbjct: 64 RHGFLPFKEVSRSYFQP 80
>gi|359151694|ref|ZP_09184315.1| ribonuclease E, partial [Streptomyces sp. S4]
Length = 587
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 187/307 (60%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 106 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKGI 165
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L W+ I + A ++ ++ P
Sbjct: 166 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLHGQWQEIQKKANASNASS--------PS 217
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + V Y+ +APDL DR++ + +F
Sbjct: 218 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTVHGYVSKVAPDLVDRLQRWTSETDVF 277
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E + L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 278 ATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 336
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 337 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 396
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 397 VQMTRKR 403
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED+ LVE + ++ +VYLG V ++P+
Sbjct: 9 FLARREAVERVMVVRQSGERTQ-IGVLEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 67
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 68 MEAAFIDIGKGRNAVL 83
>gi|260556239|ref|ZP_05828458.1| ribonuclease E [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|260410294|gb|EEX03593.1| ribonuclease E [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|452955672|gb|EME61069.1| ribonuclease E [Acinetobacter baumannii MSP4-16]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|152967401|ref|YP_001363185.1| ribonuclease, Rne/Rng family [Kineococcus radiotolerans SRS30216]
gi|151361918|gb|ABS04921.1| ribonuclease, Rne/Rng family [Kineococcus radiotolerans SRS30216]
Length = 1244
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 185/311 (59%), Gaps = 15/311 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK +
Sbjct: 822 LKSGDPVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPRGSMTGISRKLPDTERARLKKV 881
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PEG G+ +RT A G + EEL D++ L +TW+ I A S P+
Sbjct: 882 LKQVVPEGAGVIVRTAAEGVAEEELAADVQRLQATWEAIQAKASSKN----------APV 931
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP-- 468
LLH T+ +V+D FNE K+V+ + V Y+ D+APDL +R+E +D
Sbjct: 932 LLHGEPDLTVRVVRDVFNEDFTKLVISGDEAWETVRGYVDDVAPDLAERLERWDGGAGGA 991
Query: 469 --LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
+F I+E++ L ++V LP+GGSLVI+ TEA+ +DVN G G G + E+ +
Sbjct: 992 EDVFAHHRIDEQLQKALGRKVWLPSGGSLVIDPTEAMHVVDVNTGK-FTGAGGTLEETVT 1050
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++
Sbjct: 1051 RNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVT 1110
Query: 587 RHGLMEITRKR 597
GL+++TRKR
Sbjct: 1111 SLGLVQMTRKR 1121
>gi|424745528|ref|ZP_18173791.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-141]
gi|422942221|gb|EKU37282.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-141]
Length = 1115
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|329122288|ref|ZP_08250876.1| ribonuclease E [Haemophilus aegyptius ATCC 11116]
gi|327473849|gb|EGF19266.1| ribonuclease E [Haemophilus aegyptius ATCC 11116]
Length = 935
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 201/367 (54%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +S GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISHFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|424863215|ref|ZP_18287128.1| ribonuclease E [SAR86 cluster bacterium SAR86A]
gi|400757836|gb|EJP72047.1| ribonuclease E [SAR86 cluster bacterium SAR86A]
Length = 666
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 196/338 (57%), Gaps = 21/338 (6%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE GTKG LT L RF +LI + R G +SR+I+G ER ++K
Sbjct: 90 LEEGQEIIVQVTKEERGTKGAALTTQIGLAGRFLVLIPNSTRSGGISRRISGDERDQIKA 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L PE +RT G ++EEL DL LL+ W+ I +A
Sbjct: 150 ALEKLNIPENMSAIVRTNGLGRTVEELSLDLSYLLALWEEINNTTPNAT----------S 199
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+ R + +V+DYF E ++++++D + E +++ + PD D+V+ YD+ IP
Sbjct: 200 PSLIFRDDKLIVRVVRDYFKEDIEEILIDDKDIFTEAKEFIEAVIPDHSDKVKFYDEDIP 259
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ IE +I + + L +GGS+VI+ TEA+ +IDVN G E+
Sbjct: 260 LFNRYQIESQIELAFQREISLNSGGSIVIDPTEAMTTIDVNSARST--KGKDIEETAFKT 317
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM D+ N+ V +KAV DR+ V+ S +SR
Sbjct: 318 NLEAASEIARQLRLRDVGGLVVIDFIDMTDEDNQNKVESAFRKAVYSDRARVQFSGISRF 377
Query: 589 GLMEITRK--RAMMEQKADPEN-----PKSWPRFILRV 619
GL+E++R+ R + + D E+ P+S + ILR+
Sbjct: 378 GLLEVSRQRLRPSLNESYDIEHVLVRGPRSLGQSILRI 415
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
ILINSS R+A+++ KL + E + + S+Y V+++ ++ AFVN G+
Sbjct: 4 ILINSSYGDELRVALVDGAKLYDFDTESPERTLLKGSIYKATVSRIESSLDAAFVNFGSD 63
Query: 138 RPSLMDIKHYREPF 151
R + +K + F
Sbjct: 64 RHGFLPLKDLSKEF 77
>gi|415715176|ref|ZP_11465772.1| ribonuclease G [Gardnerella vaginalis 1400E]
gi|388058753|gb|EIK81537.1| ribonuclease G [Gardnerella vaginalis 1400E]
Length = 1167
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 656 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 715
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G + + ++KDLE L+ W+ I AK +E + G
Sbjct: 716 AIVSKIAPKDMGIIIRTAADGATEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 768
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 769 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 828
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 829 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 887
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 888 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 947
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 948 VTSLGLVQMTRKR 960
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 555 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 612
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 613 VQNVLPSMEAAFVDIGQARNGVL 635
>gi|424611030|ref|ZP_18049869.1| ribonuclease E, partial [Vibrio cholerae HC-39A1]
gi|408007139|gb|EKG45246.1| ribonuclease E, partial [Vibrio cholerae HC-39A1]
Length = 795
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|229524039|ref|ZP_04413444.1| ribonuclease E [Vibrio cholerae bv. albensis VL426]
gi|229337620|gb|EEO02637.1| ribonuclease E [Vibrio cholerae bv. albensis VL426]
Length = 1052
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEEHGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
>gi|169797346|ref|YP_001715139.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter baumannii AYE]
gi|213155839|ref|YP_002317884.1| ribonuclease E [Acinetobacter baumannii AB0057]
gi|215484786|ref|YP_002327021.1| ribonuclease E(RNase E) [Acinetobacter baumannii AB307-0294]
gi|301345640|ref|ZP_07226381.1| ribonuclease G and E [Acinetobacter baumannii AB056]
gi|301511839|ref|ZP_07237076.1| ribonuclease G and E [Acinetobacter baumannii AB058]
gi|301597320|ref|ZP_07242328.1| ribonuclease G and E [Acinetobacter baumannii AB059]
gi|332852952|ref|ZP_08434462.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013150]
gi|332867956|ref|ZP_08437944.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013113]
gi|417574772|ref|ZP_12225625.1| ribonuclease E/G family protein [Acinetobacter baumannii Canada
BC-5]
gi|421620251|ref|ZP_16061189.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC074]
gi|421642803|ref|ZP_16083314.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-235]
gi|421649286|ref|ZP_16089681.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-251]
gi|421659317|ref|ZP_16099538.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-83]
gi|421697880|ref|ZP_16137424.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-58]
gi|421797930|ref|ZP_16233964.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-21]
gi|421800966|ref|ZP_16236933.1| ribonuclease E/G family protein [Acinetobacter baumannii Canada
BC1]
gi|169150273|emb|CAM88170.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter baumannii AYE]
gi|213054999|gb|ACJ39901.1| ribonuclease E [Acinetobacter baumannii AB0057]
gi|213988011|gb|ACJ58310.1| Ribonuclease E(RNase E) [Acinetobacter baumannii AB307-0294]
gi|332728888|gb|EGJ60243.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013150]
gi|332733657|gb|EGJ64816.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013113]
gi|400205505|gb|EJO36485.1| ribonuclease E/G family protein [Acinetobacter baumannii Canada
BC-5]
gi|404572926|gb|EKA77966.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-58]
gi|408511369|gb|EKK13017.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-235]
gi|408514059|gb|EKK15671.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-251]
gi|408700911|gb|EKL46356.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC074]
gi|408708028|gb|EKL53306.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-83]
gi|410395555|gb|EKP47849.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-21]
gi|410406327|gb|EKP58339.1| ribonuclease E/G family protein [Acinetobacter baumannii Canada
BC1]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|417547959|ref|ZP_12199040.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-18]
gi|417566806|ref|ZP_12217678.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC143]
gi|395552478|gb|EJG18486.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC143]
gi|400388258|gb|EJP51330.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-18]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|158317018|ref|YP_001509526.1| ribonuclease [Frankia sp. EAN1pec]
gi|158112423|gb|ABW14620.1| ribonuclease, Rne/Rng family [Frankia sp. EAN1pec]
Length = 1427
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 190/319 (59%), Gaps = 14/319 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 866 LKSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLVYVPDGQNAGISRKLPDTERARLKSI 925
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EL++D+E L++ W++I A+ A + P
Sbjct: 926 LKKITPENGGVIVRTAAEGASEAELERDIERLVAQWEDIQRKAQKA----------SAPS 975
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +++D FNE ++VV V Y+ +APDL DRV Y +F
Sbjct: 976 LLYGEPDLVVRVIRDIFNEDFTELVVQGSHEAATVEGYVDTVAPDLRDRVRRYVGTGDVF 1035
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ ++E++ L ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL
Sbjct: 1036 AEHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FTGKGGNLEETVTKNNL 1094
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1095 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 1154
Query: 591 MEITRKR---AMMEQKADP 606
+++TRKR ++E ++P
Sbjct: 1155 VQMTRKRVGQGLLEAYSEP 1173
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED LVE + S +VYLG V ++ +M AFV+IG R +++
Sbjct: 790 QIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDIGKGRNAVL 843
>gi|445397723|ref|ZP_21429389.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-57]
gi|444784001|gb|ELX07834.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-57]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|440730556|ref|ZP_20910641.1| ribonuclease E [Xanthomonas translucens DAR61454]
gi|440378801|gb|ELQ15418.1| ribonuclease E [Xanthomonas translucens DAR61454]
Length = 1175
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/348 (37%), Positives = 200/348 (57%), Gaps = 22/348 (6%)
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
GE +GF P K E+ D + G +K T E +++G +V+VQV KE G KG
Sbjct: 62 GERHGFLPLK-EISRDYFQA---GVDHNKATIREL----LREGQEVVVQVDKEERGNKGA 113
Query: 312 TLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAG 369
LT + L R+ +L+ S GVSR+I G +R LK L P+ G+ IRT G
Sbjct: 114 ALTTFISLAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVG 173
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
EELQ DL+ LL WK+I E AALA P L+++ + ++DY
Sbjct: 174 RDAEELQWDLDYLLQVWKSIAE----AALAK------PAPFLIYQESRLIIRALRDYLRA 223
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
+ +++VD+P Y + ++Q + P +++ Y IPLF++F IE +I + V L
Sbjct: 224 DIGEILVDTPEMYGDAQEFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRL 283
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549
P+GGS+V++QTEAL ++DVN GS E NL AA+++AR+LRLRD+GG++
Sbjct: 284 PSGGSIVVDQTEALTAVDVNSSRAT--KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLV 341
Query: 550 VVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
V+DFIDMA + ++R V ++ A++ DR+ V++ +SR GL+E++R+R
Sbjct: 342 VIDFIDMASNKHQREVENRLQNALKYDRARVQIGRISRFGLLEMSRQR 389
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYGGE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|427401016|ref|ZP_18892254.1| rne/Rng family ribonuclease [Massilia timonae CCUG 45783]
gi|425719912|gb|EKU82839.1| rne/Rng family ribonuclease [Massilia timonae CCUG 45783]
Length = 1066
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 183/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQV KE G KG LT++ L R+ +L+ + R G VSR++ G ER L+
Sbjct: 93 LKEGQEIMVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEGEERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G + RT G ++EELQ DL L+ W+ I KSA A
Sbjct: 153 TMDKLDLPQGMSVIARTAGIGRTVEELQWDLNYLMQLWRAIEGAGKSAPGA--------- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ Y + ++ + PD+ RV+ Y +P
Sbjct: 204 -FLIYQESSLVIRAIRDYFQPDIGEVLIDTDEIYEQAQQFMSHVMPDMAHRVKRYSDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I ++ VPLP+GG++VI+ TEALVSIDVN GS E +
Sbjct: 263 LFSRFQIEHQIETAYARTVPLPSGGAIVIDHTEALVSIDVNSARAT--RGSDIETTAFNT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IV+DFIDM N+R V + +K A+ DR+ V++ ++SR
Sbjct: 321 NCEAADEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQRLKDALHHDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSYGED 63
Query: 138 RPSLMDIK-----HYRE 149
R + K ++RE
Sbjct: 64 RHGFLPFKEVARSYFRE 80
>gi|317503237|ref|ZP_07961295.1| ribonuclease G [Prevotella salivae DSM 15606]
gi|315665650|gb|EFV05259.1| ribonuclease G [Prevotella salivae DSM 15606]
Length = 539
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 133/385 (34%), Positives = 213/385 (55%), Gaps = 21/385 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP----Q 274
V +++ +N +D G F +L+ L + N + +V D +P Q
Sbjct: 61 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYLKQVNSDRKKLYPFSKAQ 116
Query: 275 GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 117 RVPDLKKDGSVQQVLTV--GQEVLVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVS 174
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +++ L W++ +
Sbjct: 175 VSSKIKSGEERARLKQLIYSIKPKNCGVIVRTVAEGKRVAELDTEMKVLNKRWEDAILKT 234
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ + P L+ G+ +++++D FN + + V++ Y+EV YL IA
Sbjct: 235 QK---------QQKRPQLVFEETGRAIAMLRDLFNPSFENIYVNNEEVYNEVKHYLTLIA 285
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+LY ++P+FD FN+ ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 286 PEKAGIVKLYKGKVPIFDNFNVTKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 345
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA +IAR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 346 TKAQNGQEANA-LDVNLGAADEIARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 404
Query: 574 ERDRSMVKVSELSRHGLMEITRKRA 598
++DR+ + LS+ GLM+ITR+R
Sbjct: 405 QKDRARHNILPLSKFGLMQITRQRV 429
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE EP +++ ++Y V KL+P + FV++G R + + HY
Sbjct: 31 IALLEDKNLVEYQNEPRQASFSVGNIYAAKVKKLMPGLNACFVDVGYERDAFL---HY 85
>gi|403675465|ref|ZP_10937628.1| ribonuclease E [Acinetobacter sp. NCTC 10304]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|444432156|ref|ZP_21227315.1| putative ribonuclease [Gordonia soli NBRC 108243]
gi|443886985|dbj|GAC69036.1| putative ribonuclease [Gordonia soli NBRC 108243]
Length = 1258
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 184/311 (59%), Gaps = 11/311 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT L R+ + + G+SRK+ VER RLK I
Sbjct: 613 LKPGDNVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRKLPDVERKRLKQI 672
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L PEG G+ IRT + G S EEL D+ L S WK I E + + + P
Sbjct: 673 LGKLVPEGAGVIIRTASEGVSAEELGADIARLESQWKTIDEAVQKTKKGS------SAPQ 726
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDK-RIPL 469
L+ + +V+D FNE KK+VV+ P+ + V Y+ +APDL +RVE + K
Sbjct: 727 ALYEEPDLLVRVVRDLFNEDFKKLVVEGPKAWRLVEGYVSSVAPDLMERVEQFQKAHADA 786
Query: 470 FDKF---NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
D F ++E++ L ++V LP+GG+L+IE TEA+ +DVN G G G + E+ +
Sbjct: 787 PDSFVVHRVDEQLTKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGK-FTGSGGNLEETVT 845
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R+ RLRDIGG+I+VDFIDM +SN+ LV + +A+ RDR+ +VSE++
Sbjct: 846 RNNLEAAEEIVRQTRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVT 905
Query: 587 RHGLMEITRKR 597
GL+++TRKR
Sbjct: 906 SLGLVQMTRKR 916
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
++AVLED LVE + S+ ++YLG V ++P M AFV+IG R ++
Sbjct: 537 QVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVL 590
>gi|163751082|ref|ZP_02158313.1| ribonuclease E [Shewanella benthica KT99]
gi|161329243|gb|EDQ00242.1| ribonuclease E [Shewanella benthica KT99]
Length = 1052
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 177/309 (57%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 91 IKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G GL +RT G EL DL+ L W I E + V
Sbjct: 151 ALSELDIPNGMGLIVRTAGVGKDSAELAWDLKVLAHHWTAIKEAS----------VGRPA 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD DR++ YD +P
Sbjct: 201 PFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEAKQHVALVRPDFADRIKHYDAEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L+
Sbjct: 261 LFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHLDRARVQLGRISRF 378
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 379 GLMEMSRQR 387
>gi|445446910|ref|ZP_21443541.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-A-92]
gi|444759852|gb|ELW84314.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-A-92]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|421627246|ref|ZP_16068057.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC098]
gi|421650981|ref|ZP_16091353.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC0162]
gi|421675753|ref|ZP_16115672.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC065]
gi|421692661|ref|ZP_16132312.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-116]
gi|445458064|ref|ZP_21446888.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC047]
gi|404559947|gb|EKA65198.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-116]
gi|408508993|gb|EKK10669.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC0162]
gi|408693337|gb|EKL38946.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC098]
gi|410381270|gb|EKP33836.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC065]
gi|444775708|gb|ELW99764.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC047]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|227833691|ref|YP_002835398.1| ribonuclease E [Corynebacterium aurimucosum ATCC 700975]
gi|262184697|ref|ZP_06044118.1| ribonuclease E [Corynebacterium aurimucosum ATCC 700975]
gi|227454707|gb|ACP33460.1| ribonuclease E [Corynebacterium aurimucosum ATCC 700975]
Length = 1062
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 10/311 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KG LT L RF + + G+SRK+ ER RLK I
Sbjct: 445 LKSGDQVLVQVAKDPIGHKGARLTTQISLAGRFLVYVPGGRSAGISRKLPAPERKRLKGI 504
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + P G IRT A S E++ D+ L S W++I SA A ++ +GA P+
Sbjct: 505 LERVIPGDGGAIIRTAAENVSEEDIASDVNRLHSLWEDI-----SARAAHEKATKGAKPV 559
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI--- 467
L+ + +V+D FNE +VVD R+Y+ V++Y+ +A DL DRV YD R
Sbjct: 560 TLYEEPDLLIKVVRDLFNEDFSTLVVDGKRSYNTVSAYVDSMAHDLADRVVRYDAREHDG 619
Query: 468 -PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
F + I+E++ L ++V LP+GG+LVI++TEA+ IDVN G G G + E+ +
Sbjct: 620 EDAFSAYRIDEQLQKALGRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVT 678
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRDIGG+IVVDFIDM N+ LV +K+A+ RDR+ +VSE++
Sbjct: 679 RNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLPENQDLVLRRLKEALGRDRTRHQVSEVT 738
Query: 587 RHGLMEITRKR 597
GL+++TRKR
Sbjct: 739 SLGLVQMTRKR 749
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ ++ VLED+ LVE + Q ++YLG V ++P+M AFV+IG R ++
Sbjct: 367 ITQVGVLEDDLLVEHFVTTETHPSQIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVL 422
>gi|193076231|gb|ABO10860.2| ribonuclease E [Acinetobacter baumannii ATCC 17978]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|390950507|ref|YP_006414266.1| RNAse E [Thiocystis violascens DSM 198]
gi|390427076|gb|AFL74141.1| RNAse E [Thiocystis violascens DSM 198]
Length = 1036
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 189/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +V+VQ+ KE G+KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 95 VREGREVVVQIDKEERGSKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGQDRNELRD 154
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+++ + PE GL +RT G ++EELQ DL+ LL WK I + EG +
Sbjct: 155 AMSQLVIPEDMGLIVRTAGVGKNVEELQWDLDYLLQLWKAIE--------TSGEGRK--A 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DY + ++V+D P + +++ + P ++ LY+ +P
Sbjct: 205 PFLIYQESDVIIRSIRDYLRADIGEIVIDDPEVFERAENFISQVMPQNLKKLRLYEDEVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + + V LP+GGS+VI+ TEAL S+D+N G+ E+ L+
Sbjct: 265 LFTRYQIESQIESAFQREVRLPSGGSIVIDHTEALTSVDINSARST--KGADIEETALNT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+ V+DFIDM N+R V + ++ A+++DR+ V+V+ +SR
Sbjct: 323 NLEAADEIARQLRLRDLGGLFVIDFIDMTPPKNQRAVEDRLRDALKQDRARVQVARISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
>gi|375136928|ref|YP_004997578.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter calcoaceticus PHEA-2]
gi|325124373|gb|ADY83896.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter calcoaceticus PHEA-2]
Length = 1107
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|357389537|ref|YP_004904376.1| putative ribonuclease [Kitasatospora setae KM-6054]
gi|311896012|dbj|BAJ28420.1| putative ribonuclease [Kitasatospora setae KM-6054]
Length = 1238
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 195/319 (61%), Gaps = 14/319 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ERTRLK I
Sbjct: 614 LKSGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPEGSMTGISRKLPENERTRLKQI 673
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P+ G+ +RT A G S EEL +D++ L W+ I + A + G P
Sbjct: 674 LKKIVPDDAGVIVRTAAEGASEEELTRDVQRLQQQWEEIQKKAAT----------GNAPA 723
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V ++ + Y+ ++APDL +R++ + + +F
Sbjct: 724 LLYGEPDMTVRVVRDIFNEDFTKVIVSGTDAWNTIHDYVSNVAPDLTERLQRWTSDVDVF 783
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + N+
Sbjct: 784 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGK-FVGQGGNLEETVTRNNI 842
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 843 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 902
Query: 591 MEITRKR---AMMEQKADP 606
+++TRKR ++E ++P
Sbjct: 903 VQMTRKRVGQGLLESFSEP 921
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 517 FLARRESVERVMVVRQNGARTQ-IGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 575
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 576 MEAAFVDIGKGRNAVL 591
>gi|421789216|ref|ZP_16225478.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-82]
gi|410399146|gb|EKP51343.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-82]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|126640478|ref|YP_001083462.1| ribonuclease E [Acinetobacter baumannii ATCC 17978]
Length = 1041
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 23 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 82
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 83 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 132
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 133 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 192
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 193 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 250
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 251 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 310
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 311 GLMEMSRQR 319
>gi|425749414|ref|ZP_18867394.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-348]
gi|425489487|gb|EKU55799.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-348]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|416147130|ref|ZP_11601586.1| ribonuclease G and E [Acinetobacter baumannii AB210]
gi|333365701|gb|EGK47715.1| ribonuclease G and E [Acinetobacter baumannii AB210]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|384141684|ref|YP_005524394.1| ribonuclease G and E [Acinetobacter baumannii MDR-ZJ06]
gi|347592177|gb|AEP04898.1| ribonuclease G and E [Acinetobacter baumannii MDR-ZJ06]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|239500867|ref|ZP_04660177.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter baumannii AB900]
gi|421677532|ref|ZP_16117424.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC111]
gi|410393288|gb|EKP45642.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC111]
Length = 1110
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|153803670|ref|ZP_01958256.1| ribonuclease E [Vibrio cholerae MZO-3]
gi|124120794|gb|EAY39537.1| ribonuclease E [Vibrio cholerae MZO-3]
Length = 619
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKR 597
R+R
Sbjct: 385 RQR 387
>gi|374857228|dbj|BAL60081.1| ribonuclease G [uncultured candidate division OP1 bacterium]
Length = 380
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 136/350 (38%), Positives = 201/350 (57%), Gaps = 23/350 (6%)
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTK 309
G F S E+ D Q K+ + G+ +Q ++ G +I+QV +EG+GTK
Sbjct: 35 GLDEKLFLSSKELSD-------QLWKERRGRKGQALQIQRVLKSGQHIILQVKREGIGTK 87
Query: 310 GPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAA 368
P T L R+W+ + + +R+GVSR+IT E RLK IAK L+ EG GL RT A
Sbjct: 88 NPQGTMKISLPGRYWVFLPTDERLGVSRRITDERESRRLKRIAKKLKREGEGLIARTAAQ 147
Query: 369 GHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFN 428
G S E+L++D LL TWK I E A+ P LL+R++ + ++D
Sbjct: 148 GASEEDLERDFNYLLGTWKGIEEQAQRVK----------APALLYRSVDLVRAFLRDRLL 197
Query: 429 EKVKKMVVDSPRTYHEVTSYLQDIAPD-LCDRVELYDKRIPLFDKFNIEEEINNMLSKRV 487
+ V+++VVDS +TY E+ +L + + DRVELY + PLF+ IEE++ L RV
Sbjct: 198 DDVQRVVVDSEKTYQEIKDFLSYMHMEKFLDRVELYRGKRPLFEARGIEEQLRESLQPRV 257
Query: 488 PLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGG 547
LP GGSLVI +TEAL +IDVN G + +E+AIL+ NL AA +I R+LRLR + G
Sbjct: 258 RLPGGGSLVIAETEALTAIDVNTGSDV--KHQDQEQAILNTNLEAAVEIPRQLRLRKLSG 315
Query: 548 IIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
II+ DF+DM + V +++ +++DR ++++ GL+EITRKR
Sbjct: 316 IIIADFVDMKRKDHIEKVIRTLQEELKKDRVPADFVDITKLGLVEITRKR 365
>gi|170726385|ref|YP_001760411.1| ribonuclease [Shewanella woodyi ATCC 51908]
gi|169811732|gb|ACA86316.1| ribonuclease, Rne/Rng family [Shewanella woodyi ATCC 51908]
Length = 1142
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 180/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +V++Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVVIQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G EL+ DL+ L+ W I E A S
Sbjct: 154 ALSELEVPQGMGLIVRTAGVGKDSAELKWDLKVLVHHWAAIKEAADS----------RPA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + + ++ + PD DR++ Y+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDAKQHVSLVRPDFVDRIKQYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|384197835|ref|YP_005583579.1| ribonuclease E/G family protein [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333110262|gb|AEF27278.1| ribonuclease E/G family protein [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 1023
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 631 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 690
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I +AK +E G
Sbjct: 691 GIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 743
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 744 PKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 803
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 804 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 862
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 863 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 922
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 923 VTSLGLVQMTRKR 935
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 528 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNILVEHYVSDIQEVQTVGNIYL 585
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 586 GRVQNVLPSMEAAFVDIGQARNGVL 610
>gi|445486221|ref|ZP_21457279.1| ribonuclease E/G family protein [Acinetobacter baumannii AA-014]
gi|444769706|gb|ELW93874.1| ribonuclease E/G family protein [Acinetobacter baumannii AA-014]
Length = 1110
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|169634492|ref|YP_001708228.1| ribonuclease E [Acinetobacter baumannii SDF]
gi|169153284|emb|CAP02390.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter baumannii]
Length = 1110
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|421807898|ref|ZP_16243755.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC035]
gi|410416077|gb|EKP67852.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC035]
Length = 1110
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|410611271|ref|ZP_11322370.1| ribonuclease E [Glaciecola psychrophila 170]
gi|410169122|dbj|GAC36259.1| ribonuclease E [Glaciecola psychrophila 170]
Length = 959
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 207/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ D H GF P K + + T PQG + +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-GADRH------GFLPLK----EIARTYFPQGYR-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G VSR+I G
Sbjct: 85 PNIKEV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGVSRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G + EEL DL+ L+S W I + A S +
Sbjct: 143 DERTELKAALSGLDLPDGMGLIVRTAGVGKTTEELAYDLDYLVSGWGRIKDMADSRS--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + +++ + PD +RV
Sbjct: 200 -------APFLIHQESDVVVRAIRDYLRRDIGEILIDNAVVHERALKHVEQMRPDYANRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL+SID+N GS
Sbjct: 253 KLYTGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALISIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDAGGLVVIDFIDMTPVRHQREVENRMKDAVRGDRARV 370
Query: 581 KVSELSRHGLMEITRKR 597
++ +SR GL+E++R+R
Sbjct: 371 QLGRISRFGLLEMSRQR 387
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQLEELRVALVDGQKLYDLDIESPGHEQKKSNIYKGTITRVEPSLEAAFVDYGAD 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|359781625|ref|ZP_09284849.1| ribonuclease E [Pseudomonas psychrotolerans L19]
gi|359370689|gb|EHK71256.1| ribonuclease E [Pseudomonas psychrotolerans L19]
Length = 1090
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 203/363 (55%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF D H GF P K E+ + +P+G + K + +G +
Sbjct: 51 EAAFVDF-GADRH------GFLPLK-EISREYFKKNPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
V+VQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VVVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 PEG-FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
G GL +RT G S EELQ DL+ LL W I+E + E P L+++
Sbjct: 155 APGDMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIIEASG----------ERKGPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + +++VDS E S+++ + P +++LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIRQVMPQYASKIKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V + V++A+E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPVKNQRAVEDRVREALEADRARVQIGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
>gi|152996326|ref|YP_001341161.1| ribonuclease [Marinomonas sp. MWYL1]
gi|150837250|gb|ABR71226.1| ribonuclease, Rne/Rng family [Marinomonas sp. MWYL1]
Length = 1071
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 196/363 (53%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF D H GF P K S +K S H + +G +
Sbjct: 54 EAAFVDFG-ADRH------GFLPLK-------EISKTYFSKKSNHEGRINIKDVLSEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R+ LK L
Sbjct: 100 VIVQVDKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGISRRIDGDDRSHLKEAMSGLN 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PE GL +RT G S EELQ DL+ L + W +I + A E P L+++
Sbjct: 160 TPENGGLIVRTAGVGRSTEELQWDLDYLDTLWSSITKAAS----------EKPAPFLIYQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY E + ++++D Y + +++ + P R+++Y PLF++F
Sbjct: 210 ESNIVIRAIRDYLREDIGEVLIDEKSAYQDAINFVMQVMPHFKSRIKMYTDSTPLFNRFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA
Sbjct: 270 IETQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N++ V +K A+E DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDIGGLVVIDFIDMTPVRNQKEVETRMKNALEADRARVQLGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
Score = 38.9 bits (89), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 42/75 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEELRVALVDGQRLYDLDIESGSREQKKSNIYKGRITRIEPSLEAAFVDFGAD 63
Query: 138 RPSLMDIKHYREPFI 152
R + +K + +
Sbjct: 64 RHGFLPLKEISKTYF 78
>gi|262280822|ref|ZP_06058605.1| ribonuclease E [Acinetobacter calcoaceticus RUH2202]
gi|262257722|gb|EEY76457.1| ribonuclease E [Acinetobacter calcoaceticus RUH2202]
Length = 1118
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|184156730|ref|YP_001845069.1| ribonuclease G and E [Acinetobacter baumannii ACICU]
gi|332873141|ref|ZP_08441098.1| S1 RNA binding domain protein [Acinetobacter baumannii 6014059]
gi|384130399|ref|YP_005513011.1| Ribonuclease E RNase E [Acinetobacter baumannii 1656-2]
gi|385235999|ref|YP_005797338.1| ribonuclease G and E [Acinetobacter baumannii TCDC-AB0715]
gi|387125356|ref|YP_006291238.1| ribonuclease, Rne/Rng family [Acinetobacter baumannii MDR-TJ]
gi|407931335|ref|YP_006846978.1| Ribonuclease E RNase E [Acinetobacter baumannii TYTH-1]
gi|417570838|ref|ZP_12221695.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC189]
gi|417576562|ref|ZP_12227407.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-17]
gi|417871041|ref|ZP_12515985.1| ribonuclease E [Acinetobacter baumannii ABNIH1]
gi|417875703|ref|ZP_12520508.1| ribonuclease E [Acinetobacter baumannii ABNIH2]
gi|417879803|ref|ZP_12524356.1| ribonuclease E [Acinetobacter baumannii ABNIH3]
gi|417882039|ref|ZP_12526347.1| ribonuclease E [Acinetobacter baumannii ABNIH4]
gi|421202552|ref|ZP_15659700.1| ribonuclease E [Acinetobacter baumannii AC12]
gi|421533744|ref|ZP_15980025.1| ribonuclease E [Acinetobacter baumannii AC30]
gi|421630606|ref|ZP_16071307.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC180]
gi|421688555|ref|ZP_16128255.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-143]
gi|421702133|ref|ZP_16141618.1| ribonuclease E [Acinetobacter baumannii ZWS1122]
gi|421705872|ref|ZP_16145293.1| ribonuclease E [Acinetobacter baumannii ZWS1219]
gi|421792186|ref|ZP_16228341.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-2]
gi|424053843|ref|ZP_17791374.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab11111]
gi|424064778|ref|ZP_17802262.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab44444]
gi|425751557|ref|ZP_18869502.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-113]
gi|445465174|ref|ZP_21449952.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC338]
gi|445481526|ref|ZP_21455970.1| S1 RNA binding domain / ribonuclease E/G family multi-domain
protein [Acinetobacter baumannii Naval-78]
gi|183208324|gb|ACC55722.1| Ribonuclease G and E [Acinetobacter baumannii ACICU]
gi|322506619|gb|ADX02073.1| Ribonuclease E RNase E [Acinetobacter baumannii 1656-2]
gi|323516496|gb|ADX90877.1| ribonuclease G and E [Acinetobacter baumannii TCDC-AB0715]
gi|332738653|gb|EGJ69523.1| S1 RNA binding domain protein [Acinetobacter baumannii 6014059]
gi|342225056|gb|EGT90066.1| ribonuclease E [Acinetobacter baumannii ABNIH2]
gi|342226357|gb|EGT91330.1| ribonuclease E [Acinetobacter baumannii ABNIH1]
gi|342227450|gb|EGT92382.1| ribonuclease E [Acinetobacter baumannii ABNIH3]
gi|342238288|gb|EGU02721.1| ribonuclease E [Acinetobacter baumannii ABNIH4]
gi|385879848|gb|AFI96943.1| ribonuclease, Rne/Rng family [Acinetobacter baumannii MDR-TJ]
gi|395551286|gb|EJG17295.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC189]
gi|395569783|gb|EJG30445.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-17]
gi|398327935|gb|EJN44065.1| ribonuclease E [Acinetobacter baumannii AC12]
gi|404561298|gb|EKA66534.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-143]
gi|404667329|gb|EKB35250.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab11111]
gi|404672861|gb|EKB40665.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab44444]
gi|407194896|gb|EKE66032.1| ribonuclease E [Acinetobacter baumannii ZWS1122]
gi|407195285|gb|EKE66419.1| ribonuclease E [Acinetobacter baumannii ZWS1219]
gi|407899916|gb|AFU36747.1| Ribonuclease E RNase E [Acinetobacter baumannii TYTH-1]
gi|408696992|gb|EKL42512.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC180]
gi|409988416|gb|EKO44588.1| ribonuclease E [Acinetobacter baumannii AC30]
gi|410400493|gb|EKP52661.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-2]
gi|425500004|gb|EKU66032.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-113]
gi|444770318|gb|ELW94475.1| S1 RNA binding domain / ribonuclease E/G family multi-domain
protein [Acinetobacter baumannii Naval-78]
gi|444779306|gb|ELX03300.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC338]
Length = 1110
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|417553570|ref|ZP_12204639.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-81]
gi|417560781|ref|ZP_12211660.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC137]
gi|421200818|ref|ZP_15657977.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC109]
gi|421456914|ref|ZP_15906252.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-123]
gi|421634014|ref|ZP_16074635.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-13]
gi|421806212|ref|ZP_16242084.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-A-694]
gi|395523363|gb|EJG11452.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC137]
gi|395562850|gb|EJG24503.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC109]
gi|400210618|gb|EJO41587.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-123]
gi|400389987|gb|EJP57034.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-81]
gi|408705121|gb|EKL50470.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-13]
gi|410407089|gb|EKP59077.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-A-694]
Length = 1110
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|389713805|ref|ZP_10187089.1| ribonuclease E [Acinetobacter sp. HA]
gi|388609921|gb|EIM39062.1| ribonuclease E [Acinetobacter sp. HA]
Length = 1144
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 217/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANTY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ + P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 YKADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK + +L P G + +RT G S EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQSTANS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N G E L+ NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V
Sbjct: 300 DINSAKST--RGQDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|421760898|ref|ZP_16197709.1| ribonuclease E [Bartonella bacilliformis INS]
gi|411174129|gb|EKS44165.1| ribonuclease E [Bartonella bacilliformis INS]
Length = 771
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 163/527 (30%), Positives = 260/527 (49%), Gaps = 57/527 (10%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V++D K+ E E ++YL VT++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVQDNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G+ R + + P R A EE AV ++ND
Sbjct: 61 YGSGRHGFLTFSEIHPDYYQIPVADRL--------ALLEKEEKAVAFEND---------- 102
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
DDLV EE + D + ++ K N I G F + + +D E
Sbjct: 103 -----DDLV-------EEINQDKRNSKKIKKQKNSRTIAAGIENDIFSESIT----MDDE 146
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
S S D+ P T SK K +++ ++VQV+KE G KG L
Sbjct: 147 SFDMLTS------DAFEEKP--TYYSKQERQYKIQEVIKRRQILLVQVIKEERGNKGAAL 198
Query: 314 TAYPKLRSRFWILITSCDR-IGVSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G+SRKIT + R RLK I K L+ P+G G+ +RT
Sbjct: 199 TTYLSLAGRYSVLMPNTARGGGISRKITNTQDRNRLKEIVKGLEVPKGMGIILRTAGENR 258
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L+ W E +S L + P L++ ++D +N+
Sbjct: 259 TKAEVKRDYEYLMRLW----ETVRSLTLKS------IAPCLVYEESSLIKRSIRDLYNKN 308
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F + IE +++ +L +V L
Sbjct: 309 ISEILVSGDQGYREAKDFMRMLMPSYAKVVQPYRDPIPIFTRSGIEIQLDKILHPQVSLK 368
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+ID+N G H S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 369 SGGYLVINQTEALVAIDINSGRSTKEH--SVEKTALQTNLEAAEEIARQLRLRDLAGLIV 426
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+DFIDM + N +LV +++K ++ DR+ ++V +S GL+E++R+R
Sbjct: 427 IDFIDMLEKRNIKLVEKKLKDCLKSDRARIQVGHISNFGLLEMSRQR 473
>gi|325963637|ref|YP_004241543.1| ribonuclease, Rne/Rng family [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469724|gb|ADX73409.1| ribonuclease, Rne/Rng family [Arthrobacter phenanthrenivorans
Sphe3]
Length = 1197
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 186/307 (60%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER RLK I
Sbjct: 543 LKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGGSMTGISRKLPDVERNRLKRI 602
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K PE G+ +RT A G S EEL D+ L + W+ I ++S + A P
Sbjct: 603 LKDRLPEQAGVIVRTAAEGASEEELTHDINRLRAQWEGIESQSQSTKILA--------PE 654
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + +Y+ +APDL R+E + K +F
Sbjct: 655 LLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIEAYVTYVAPDLVGRLEKWTKDQDIF 714
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I+ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 715 SAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNL 773
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA+++ R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 774 EAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGL 833
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 834 VQMTRKR 840
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
++I++ F++ ++ + QR IAVLED L E + + + +VYLG V
Sbjct: 439 TVITEAEFLARRESVDRQMIVRQRDDRIQIAVLEDGVLAEHFVSKTQQDSLIGNVYLGKV 498
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 499 QNVLPSMEAAFVDIGRGRNAVL 520
>gi|359406323|ref|ZP_09199021.1| S1 RNA binding domain protein [Prevotella stercorea DSM 18206]
gi|357556385|gb|EHJ37994.1| S1 RNA binding domain protein [Prevotella stercorea DSM 18206]
Length = 524
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 134/386 (34%), Positives = 219/386 (56%), Gaps = 23/386 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGT 276
V +++ +N S +D G F +L+ L + N + +V D +P + T
Sbjct: 46 VKKLMPGLNASFVDVGYERDAFLHYLD----LGNQFNSYEKYLRQVQSDRKKLYPFAKAT 101
Query: 277 K--DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
K D + ++ L V G +V+VQ+VKE + TKGP LT R+ +L+ D++
Sbjct: 102 KQPDLRKDGSVQSTLTV--GQEVLVQIVKEPISTKGPRLTGELSFAGRYLVLMPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L W++ +
Sbjct: 160 VSTKIKSGEERARLKQLINSIKPKNCGVIVRTVAEGKRVAELDAELKVLTKRWEDALIKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ P L+ G+ +++++D FN + + V+ +HEV +Y+ IA
Sbjct: 220 QKTQ---------KRPQLIFEETGRAVALLRDLFNPTYENIYVNDENVFHEVKNYVSLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ + V+LY +P+FD FN+ ++I + K V +G L+IE TEAL +DVN G+
Sbjct: 271 PEKANIVKLYTGTVPIFDNFNVTKQIKSSFGKTVNYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKA-ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKA 572
H + ++A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++L+YE + K
Sbjct: 331 --SHSDNGQEANALDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQLLYERMCKN 388
Query: 573 VERDRSMVKVSELSRHGLMEITRKRA 598
+++DR+ + LS+ GLM+ITR+R
Sbjct: 389 MQKDRARHNILPLSKFGLMQITRQRV 414
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP + ++Y+ V KL+P + +FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQTEPRSVSFSVGNIYVAKVKKLMPGLNASFVDVGYERDAFL---HY 70
>gi|395779955|ref|ZP_10460423.1| rne/Rng family ribonuclease [Bartonella washoensis 085-0475]
gi|395419705|gb|EJF86001.1| rne/Rng family ribonuclease [Bartonella washoensis 085-0475]
Length = 873
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 173/594 (29%), Positives = 282/594 (47%), Gaps = 56/594 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A LEE + + N DV
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL----------ALLEEE----EKAAVGENHADVF 106
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
++ + + +E++ S + +V +II D D ED H + E
Sbjct: 107 IEETNKNKKRSRKTKNEKN-------SIMAADVENNIISDAITTEDTEDAFTDVPHDEIE 159
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
G ++ E+P T K K +++ ++VQV+KE G KG L
Sbjct: 160 MVGAEDAREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAAL 209
Query: 314 TAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G +SRKIT V+ R RLK I K L P+G G+ +RT A
Sbjct: 210 TTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLKEIVKELAVPKGMGVILRTAGANR 269
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L W + ++ L + P L+H ++D +N+
Sbjct: 270 TKAEIKRDYEYLTRLWDTV----RTLTLKS------TAPCLVHEESNLIKRSIRDLYNKN 319
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V L
Sbjct: 320 INEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLHPQVSLK 379
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 380 SGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRDLAGLIV 437
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR---AMMEQKADP- 606
+DFIDM +D N R+V +++K ++ DR+ ++V +S GL+E++R+R +++E P
Sbjct: 438 IDFIDMLEDRNVRMVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQRIRVSVLESTTQPC 497
Query: 607 ------ENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGF 654
N +S L V + YL + + V + A +L R
Sbjct: 498 PHCAGTGNVRSESSIALHVMRSIEEYLLHNPQHNITVRTPVATALYVLNHKRNI 551
>gi|421662104|ref|ZP_16102272.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC110]
gi|421693962|ref|ZP_16133594.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-692]
gi|424061285|ref|ZP_17798775.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab33333]
gi|404569801|gb|EKA74886.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-692]
gi|404666967|gb|EKB34897.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab33333]
gi|408714907|gb|EKL60037.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC110]
Length = 1110
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|119897904|ref|YP_933117.1| ribonuclease E [Azoarcus sp. BH72]
gi|119670317|emb|CAL94230.1| probable ribonuclease E [Azoarcus sp. BH72]
Length = 1014
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 212/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ ++I EP EA F D+ E +GF P K + S
Sbjct: 26 DLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY-------GAERHGFLPFK----EIS 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ G K + E +++G ++IVQV K+ G KG LT Y L R+ +L+
Sbjct: 75 RSYFQPGVDAGKASIKEA----LREGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMP 130
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ER L+ + L+ P G L RT A G S EELQ DL LL W
Sbjct: 131 NNPRGGGVSRRVEGDERAELRDVMDQLEVPGGMSLIARTAAIGRSAEELQWDLNYLLQLW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S + A L+++ + ++DYF ++ ++++D+ Y +
Sbjct: 191 TAIEGAATSQSGA----------FLIYQEGSLVIRAIRDYFQPEIGEILIDTDDIYEQAR 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P +RV+ Y +PLF +F IE +I + S++V LP+GG++VI+ TEALVSI
Sbjct: 241 QFMAHVMPGNVNRVKRYQDDVPLFSRFQIEHQIESAYSRQVGLPSGGAVVIDHTEALVSI 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G+ E+ NL AA +IAR+LRLRD+GG+IV+DFIDM N+R V
Sbjct: 301 DVNSGRAT--KGADIEETAFRTNLEAADEIARQLRLRDLGGLIVIDFIDMESQKNQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++ A+ DR+ V+ ++SR GL+E++R+R
Sbjct: 359 NRLRDALRHDRARVQTGKISRFGLLELSRQR 389
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K + P
Sbjct: 64 RHGFLPFKEISRSYFQP 80
>gi|417543939|ref|ZP_12195025.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC032]
gi|421666267|ref|ZP_16106359.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC087]
gi|421670861|ref|ZP_16110843.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC099]
gi|400381827|gb|EJP40505.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC032]
gi|410383158|gb|EKP35691.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC099]
gi|410388192|gb|EKP40631.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC087]
Length = 1109
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 190/309 (61%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMEMSRQR 388
>gi|405980383|ref|ZP_11038722.1| rne/Rng family ribonuclease [Actinomyces turicensis ACS-279-V-Col4]
gi|404390376|gb|EJZ85445.1| rne/Rng family ribonuclease [Actinomyces turicensis ACS-279-V-Col4]
Length = 914
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 190/307 (61%), Gaps = 10/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ +LI + +G+SRK+ ERTRLK I
Sbjct: 294 LKSGDPVLVQVTKDPIGHKGARLTSQITLAGRYLVLIPNGSMMGISRKLPDRERTRLKKI 353
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G G+ +RT A G + E+++ D+ L + W +I E K+ A P
Sbjct: 354 LKQVVPTGSGVIVRTAAEGATEEQIRDDVARLSAQWASIEEQQKNTKTA---------PT 404
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL + +V+D FNE K+V++ T+ V SY+ +++P+L DRVE + +F
Sbjct: 405 LLRGEPELAVRVVRDIFNEDFSKLVIEGNETFETVKSYVDELSPELSDRVEKWVGTDNVF 464
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
I+E+++ + ++V LP+GG+L+I++TEA+ IDVN G G G + E+ + NL
Sbjct: 465 AAHRIDEQLSKGMDRKVWLPSGGTLIIDRTEAMTVIDVNTGK-FIGAGGTLEETVTHNNL 523
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGII+VDF+DM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 524 EAAEEIVRQLRLRDIGGIIIVDFVDMVLESNRDLVLRRLVECLGRDRTRHQVTEITSLGL 583
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 584 VQMTRKR 590
Score = 42.7 bits (99), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ +IA+LED+ LVE + ++YLG V ++P+M AFV+IG R +++
Sbjct: 216 LDQIAILEDDLLVEHYVARRTQKSMVGNIYLGRVQNVLPSMEAAFVDIGRGRNAVL 271
>gi|294141326|ref|YP_003557304.1| ribonuclease E [Shewanella violacea DSS12]
gi|293327795|dbj|BAJ02526.1| ribonuclease E [Shewanella violacea DSS12]
Length = 1139
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 177/309 (57%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G GL +RT G EL DL+ L W I E + V
Sbjct: 154 ALSELAVPNGMGLIVRTAGVGKDSAELAWDLKVLEHHWTAIKEAS----------VGRPA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD DR++ YD +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEAKQHVALVRPDFADRIKHYDAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L+
Sbjct: 264 LFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHLDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|89094315|ref|ZP_01167256.1| ribonuclease E [Neptuniibacter caesariensis]
gi|89081374|gb|EAR60605.1| ribonuclease E [Oceanospirillum sp. MED92]
Length = 947
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 207/363 (57%), Gaps = 28/363 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K E+ + T P T+ S+ P K L+ +GT+
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EISREYFTQPP--TRGSR--PNIKEVLK--EGTE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R +LK ++
Sbjct: 100 VIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEDRAQLKEALSGVN 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ G+ +RT G S EELQ D E L + W I + ++ E P L+++
Sbjct: 160 IPKQMGIIVRTAGVGRSSEELQWDFEYLQTLWTAIKQASE----------EKPAPFLIYQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ V+DY + ++++D P+ + + ++++ + P +++ Y ++ PLF++F
Sbjct: 210 ESNVVIRAVRDYLRSDIGEVLIDDPQVFEDAKNFVKQVMPTYESKIKHYSEQTPLFNRFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA
Sbjct: 270 IETQIETAFQREVTLPSGGSIVIDPTEALVSIDINSARAT--RGGDIEETALHTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N+R V ++ A++ DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDIGGLVVIDFIDMTPIKNQREVENRLRDALKLDRARVQMGRISRFGLLEMS 387
Query: 595 RKR 597
R+R
Sbjct: 388 RQR 390
Score = 45.8 bits (107), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGSREQKKANIYKGKITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHY-REPFIFPPFR 157
R + +K RE F PP R
Sbjct: 64 RHGFLPLKEISREYFTQPPTR 84
>gi|421655176|ref|ZP_16095500.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-72]
gi|408509313|gb|EKK10988.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-72]
Length = 1109
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 218/391 (55%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++++A + DR+ ++ +LSR GLME++R+R
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQR 388
>gi|386819725|ref|ZP_10106941.1| ribonuclease, Rne/Rng family [Joostella marina DSM 19592]
gi|386424831|gb|EIJ38661.1| ribonuclease, Rne/Rng family [Joostella marina DSM 19592]
Length = 516
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 189/316 (59%), Gaps = 14/316 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQ 355
++VQ+VKE + TKGP +++ + R+ +L+ DR+ VS+KI + E+ RLK + ++++
Sbjct: 122 ILVQIVKEPISTKGPRISSELSIAGRYLVLVPFSDRVSVSQKIESKEEKDRLKRLVQSIR 181
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFG+ +RTVA G + EL KDL LL+ W + + A P +
Sbjct: 182 PKGFGVIVRTVAEGKKVAELDKDLNNLLAKWTALCKKIYKANY----------PSKVLSE 231
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
M + SI++D FN+ + VD Y ++ YL +IAP+ V+LY+ IP+++K+ +
Sbjct: 232 MNRAASILRDVFNDDFTGIYVDDETLYFQIKDYLHEIAPEKESIVKLYESNIPIYEKYGV 291
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V G LVIE TEAL IDVN G+ S+E L+VNL AA +
Sbjct: 292 ERQIKTSFGRTVSSSKGAYLVIEHTEALHVIDVNSGNRS-NKAKSQEDTALEVNLIAASE 350
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
+AR+LRLRD+GGIIVVDFIDMA+ N+R +++ +++ + DR+ K+ S+ GL++ITR
Sbjct: 351 VARQLRLRDMGGIIVVDFIDMANADNRRQLFDHLREEMRDDRAKHKILPPSKFGLIQITR 410
Query: 596 KRAM--MEQKADPENP 609
+R M K ENP
Sbjct: 411 QRVRPEMNIKTREENP 426
>gi|256396379|ref|YP_003117943.1| ribonuclease, Rne/Rng family [Catenulispora acidiphila DSM 44928]
gi|256362605|gb|ACU76102.1| ribonuclease, Rne/Rng family [Catenulispora acidiphila DSM 44928]
Length = 1334
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 188/307 (61%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+ QV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 771 LKSGQAVLTQVTKDPIGHKGARLTSQISLPGRYLVYVPEGTMTGISRKLPENERNRLKTI 830
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G + +EL++D+E L + W+ I AK++A G+ P
Sbjct: 831 LKAVVPEHAGVIVRTAAEGATEDELRRDVERLSAQWEEIQRKAKTSA--------GSAPT 882
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + + Y+ +APDL R+E + +F
Sbjct: 883 LLYGEPDLTVRVVRDIFNEDFSKLVVSGDQAWDTIREYVGGVAPDLAPRLERWTSEQDIF 942
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + N+
Sbjct: 943 AVHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGSGGNLEETVTRNNI 1001
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1002 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 1061
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 1062 IQMTRKR 1068
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNF------VSTVILINSSICTMQRIAVLEDEKLVE 100
L++ Q+ ++ + LI++ F V V+++ S Q I VLED LVE
Sbjct: 648 LEAKKQRRREGRDTGRRRAPLITEAEFLARRESVERVMVVRQSGDRTQ-IGVLEDGVLVE 706
Query: 101 LLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ +S +VYLG V ++P+M AFV+IG R +++
Sbjct: 707 HYVNRAQSASYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 748
>gi|384083484|ref|ZP_09994659.1| ribonuclease, Rne/Rng family protein [gamma proteobacterium HIMB30]
Length = 985
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 210/367 (57%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQK--- 293
EA F DF E +GF P K P+ + +TP E +++ K
Sbjct: 54 EAAFIDF-------GSERHGFLPLKEISPEYFY-----------NTPAEGERVKIDKVLK 95
Query: 294 -GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLK-VI 350
G ++I+QV KE GTKG LT Y L R+ +L+ + D G+SR+I G +R L+ +
Sbjct: 96 EGQELIIQVEKEERGTKGAALTTYISLAGRYLVLMPNNPDAGGISRRIEGDDRAELRDKL 155
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
A +G G+ IRT G ++EELQ DL+ L + W+ I + AAL+ G P
Sbjct: 156 ANLTITQGAGVIIRTAGVGRTVEELQWDLDYLDTAWQAI----RKAALS------GVAPF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+++ + ++D+ + + +++VD+ + + + +Q + P ++V+LY PLF
Sbjct: 206 LIYQESNVIVRAIRDHLRQDIGEVLVDNVQVFEKAKDLVQQVMPSYGNKVKLYQDETPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++F +E +I + + V LP+GG++VI+ TEALVSID+N G E+ L NL
Sbjct: 266 NRFQVEGQIESAFQREVRLPSGGAIVIDPTEALVSIDINSARAT--KGGDIEETALHTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM+ + N++ V +K A++ DR+ V++ +SR GL
Sbjct: 324 EAADEIARQLRLRDMGGLVVIDFIDMSANKNQKAVENRLKDALKSDRARVQIGRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|421497786|ref|ZP_15944934.1| ribonuclease E [Aeromonas media WS]
gi|407183109|gb|EKE57018.1| ribonuclease E [Aeromonas media WS]
Length = 1034
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 206/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 28 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 71
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 72 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 131
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL LL+ W +I H S A P+L+
Sbjct: 132 LTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQDRTA--------PVLI 181
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + S+++ + PD +RV+LY + LF+
Sbjct: 182 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKSHIELVRPDFLNRVKLYKGDVALFNH 241
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 242 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 299
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 300 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 359
Query: 593 ITRKR 597
++R+R
Sbjct: 360 MSRQR 364
>gi|50954527|ref|YP_061815.1| ribonuclease G [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951009|gb|AAT88710.1| ribonuclease G [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 847
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 184/309 (59%), Gaps = 11/309 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L ++ G +V+VQV K+ +G KG LT+ L + + + + G+SRK+ ER+RLK
Sbjct: 337 LALKPGDRVLVQVTKDPVGHKGARLTSQISLPGHYLVYVPNGSMNGISRKLPDTERSRLK 396
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K + PE G+ +RT A G + E+L D+ L + W +I ++
Sbjct: 397 KILKEVLPESAGVIVRTAAEGATEEQLTLDVTRLTAQWADISRQNETQQ----------A 446
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LLH + I++D FNE +K+V+ + SYL+ +APDL DRVE Y
Sbjct: 447 PALLHSEPDLLIKIIRDVFNEDFQKLVIAGDDARQTIESYLRQVAPDLLDRVEAYTGERD 506
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
FD+ I E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 507 AFDEHRITEQIEKALERKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKN 565
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++
Sbjct: 566 NLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLIECLSRDRTKHQVAEVTSL 625
Query: 589 GLMEITRKR 597
GL+++TRK+
Sbjct: 626 GLVQMTRKK 634
>gi|344199258|ref|YP_004783584.1| Rne/Rng family ribonuclease [Acidithiobacillus ferrivorans SS3]
gi|343774702|gb|AEM47258.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrivorans SS3]
Length = 769
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 220/406 (54%), Gaps = 39/406 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + S I G EP EA F D+ E +GF P K E+ +
Sbjct: 26 DLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLK-EIAREY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
QG K + V++G +VIVQV KE +KG LT + L R+ +L+
Sbjct: 78 FLQQEQGRKRIQDL--------VREGQEVIVQVDKEERSSKGAALTTFVSLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR+I G +RT+++ + L PE G+ RT G LE LQ+DLE L W
Sbjct: 130 NNPRAGGVSRRIEGDDRTQIRQHLQLLDIPENMGVIARTAGIGQELEALQRDLEYLKQIW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ I+ D A P L+++ + ++D+F+E ++++D YH
Sbjct: 190 QAIV----------DTAAPRAAPFLIYQEGNVVVRALRDHFSEDFGEVLIDEEGAYHAAV 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P + R++ YD +PLF ++ IE++I + S+ V L +GG++VI+ TEALV++
Sbjct: 240 QFMGSMMPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVAV 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G + + NL AA++IAR++RLRD+GG+IVVDFIDM ++R V
Sbjct: 300 DVNSGRATKGQDIA--ETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR--AMMEQKADPENPK 610
++K A++ DR+ V++ +SR GLME++R+R A +E+ + P+
Sbjct: 358 NKLKDALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPR 403
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL++L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHY-REPFI 152
R + +K RE F+
Sbjct: 64 RHGFLPLKEIAREYFL 79
>gi|345880128|ref|ZP_08831685.1| hypothetical protein HMPREF9431_00349 [Prevotella oulorum F0390]
gi|343923705|gb|EGV34389.1| hypothetical protein HMPREF9431_00349 [Prevotella oulorum F0390]
Length = 524
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 212/385 (55%), Gaps = 21/385 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP----Q 274
V +++ +N +D G F +L+ L + N + +V D +P Q
Sbjct: 46 VKKLMPGLNACFVDLGYERDAFLHYLD----LGSQFNSYNKYLKQVCSDRKKLYPFSKAQ 101
Query: 275 GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 102 RLPDIKKDDTIQQVLSV--GQEVLVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +++ L W+ +
Sbjct: 160 VSSKIKSGEERARLKQLIYSIKPKNCGVIVRTVAEGKRVAELDNEMKVLTKRWEKAISKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ A P L+ G+ +++++D FN + + V++ Y+E+ YL IA
Sbjct: 220 QKNA---------KRPQLVFEETGRAIAMLRDLFNPSFEHIHVNNEEVYNEIKHYLTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ D V+LY + P+FD FNI ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PEKADIVKLYTGKTPIFDNFNITKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 SRAKNGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRA 598
++DR+ + LS+ GLM+ITR+R
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRV 414
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+KLVE EP +++ ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKKLVEYQNEPRQASFSVGNIYVAKVKKLMPGLNACFVDLGYERDAFL---HY 70
>gi|238060599|ref|ZP_04605308.1| ribonuclease Rne/Rng [Micromonospora sp. ATCC 39149]
gi|237882410|gb|EEP71238.1| ribonuclease Rne/Rng [Micromonospora sp. ATCC 39149]
Length = 1086
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 192/307 (62%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + + G+SRK+ ER RL+ +
Sbjct: 625 LRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPNGNASGISRKLPDTERKRLRDV 684
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L P+G G+ +RT A G S +EL +D++ L + W++I AK A+ G P+
Sbjct: 685 LKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDI--QAKVAS--------GGAPV 734
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +V+D FNE +++V++ +Y V SYL ++PDL DRV + +F
Sbjct: 735 LLYEEPDLVIRVVRDLFNEDFRELVIEGDESYGMVESYLSHVSPDLVDRVRRHVGTSDVF 794
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I L ++V LP+GG LVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 795 ATYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGK-YTGAGGNLEETVTRNNL 853
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 854 EAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 913
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 914 VQMTRKR 920
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR IAVLED LVE + S +VYLG V
Sbjct: 522 ILSESEFLARREAVDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQ 581
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 582 NVLPSMEAAFVDIGRGRNAVL 602
>gi|347540695|ref|YP_004848120.1| ribonuclease E [Pseudogulbenkiania sp. NH8B]
gi|345643873|dbj|BAK77706.1| ribonuclease E [Pseudogulbenkiania sp. NH8B]
Length = 1014
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 139/393 (35%), Positives = 214/393 (54%), Gaps = 41/393 (10%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ V K N+ +I EP EA F D+ H GF P K EV
Sbjct: 26 DLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRH-------GFLPFK-EVSRSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
++ G + +++G +V+VQV K+ G KG LT Y L R+ +L+
Sbjct: 78 FQNYEGGRPRIQDV--------LREGMEVMVQVEKDERGNKGAALTTYISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR+I G ER LK ++A+ P+G L RT G + EELQ DL LL W
Sbjct: 130 NNPRGGGVSRRIEGEERQELKDLLAQLEVPQGMSLIARTAGIGRTFEELQWDLNYLLQLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAV--PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHE 444
+ I EG GA P+L+ + + ++DY+ + ++++D+ + +
Sbjct: 190 RAI------------EGAAGAQSGPLLILQEGSLVIRAIRDYYQPDIGEILIDTEEIHEQ 237
Query: 445 VTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALV 504
++ + P+ +RV+LY +PLF +F IE +I S+ V LP+GG++VI+ TEALV
Sbjct: 238 ARQFMAHVMPNTINRVKLYQDPVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALV 297
Query: 505 SIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRL 564
S+DVN G+ E+ L NL AA++IAR+LRLRD+GG+IV+DFIDM N+R
Sbjct: 298 SVDVNSARAT--KGADIEETALKTNLEAAEEIARQLRLRDLGGLIVIDFIDMEIQKNQRE 355
Query: 565 VYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
V ++ ++ DR+ V++ +LSR GL+E++R+R
Sbjct: 356 VENRLRDVLKHDRARVQMGKLSRFGLLELSRQR 388
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E V + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTD 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|224825745|ref|ZP_03698849.1| ribonuclease, Rne/Rng family [Pseudogulbenkiania ferrooxidans 2002]
gi|224601969|gb|EEG08148.1| ribonuclease, Rne/Rng family [Pseudogulbenkiania ferrooxidans 2002]
Length = 1002
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 139/393 (35%), Positives = 214/393 (54%), Gaps = 41/393 (10%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ V K N+ +I EP EA F D+ H GF P K EV
Sbjct: 26 DLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRH-------GFLPFK-EVSRSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
++ G + +++G +V+VQV K+ G KG LT Y L R+ +L+
Sbjct: 78 FQNYEGGRPRIQDV--------LREGMEVMVQVEKDERGNKGAALTTYISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR+I G ER LK ++A+ P+G L RT G + EELQ DL LL W
Sbjct: 130 NNPRGGGVSRRIEGEERQELKDLLAQLEVPQGMSLIARTAGIGRTFEELQWDLNYLLQLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAV--PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHE 444
+ I EG GA P+L+ + + ++DY+ + ++++D+ + +
Sbjct: 190 RAI------------EGAAGAQSGPLLILQEGSLVIRAIRDYYQPDIGEILIDTEEIHEQ 237
Query: 445 VTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALV 504
++ + P+ +RV+LY +PLF +F IE +I S+ V LP+GG++VI+ TEALV
Sbjct: 238 ARQFMAHVMPNTINRVKLYQDPVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALV 297
Query: 505 SIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRL 564
S+DVN G+ E+ L NL AA++IAR+LRLRD+GG+IV+DFIDM N+R
Sbjct: 298 SVDVNSARAT--KGADIEETALKTNLEAAEEIARQLRLRDLGGLIVIDFIDMEIQKNQRE 355
Query: 565 VYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
V ++ ++ DR+ V++ +LSR GL+E++R+R
Sbjct: 356 VENRLRDVLKHDRARVQMGKLSRFGLLELSRQR 388
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E V + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTD 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|127512522|ref|YP_001093719.1| ribonuclease [Shewanella loihica PV-4]
gi|126637817|gb|ABO23460.1| RNAse E [Shewanella loihica PV-4]
Length = 1128
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 179/309 (57%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G EL+ DL+ L W I E A++
Sbjct: 154 AMSELEVPQGMGLIVRTAGVGKDAAELKWDLKVLQHHWAAIEEAAQNRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D R Y + ++ + PD DR++ Y+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEVLIDHQRIYEQAKQHVALVRPDFVDRIKRYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 382 GLMEMSRQR 390
>gi|410694587|ref|YP_003625209.1| Ribonuclease E (RNase E) [Thiomonas sp. 3As]
gi|294341012|emb|CAZ89407.1| Ribonuclease E (RNase E) [Thiomonas sp. 3As]
Length = 1009
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 210/377 (55%), Gaps = 31/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +++ EP EA F D+ E H GF P K + S +G S+
Sbjct: 40 NIYKAVVTRVEPSLEACFVDYGEERH-------GFLPFK----EISRQYFKEGVSPSQA- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ + +G +++VQV KE G KG LT L R+ +L+ + R G VSR+I G
Sbjct: 88 ---RIQDVITEGQQLLVQVEKEERGNKGAALTTIISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG L RT G S EELQ DL LL W SA A
Sbjct: 145 EDRQELRETMDQLQHPEGMSLIARTAGIGRSAEELQWDLNYLLKLW--------SAVRDA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
E +GA L+++ + ++DYF + ++++D+ + + ++ + PD DRV
Sbjct: 197 SETQKGA--FLIYQESSLVIRAIRDYFTSDIGEILIDTEDVFEQARQFMLHVMPDTVDRV 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE++I S+ V LP GG++VI+ TEALV++DVN G++
Sbjct: 255 KRYRDDLPLFSRFQIEQQIETAYSRTVNLPAGGAIVIDHTEALVAVDVNSARST--RGNA 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E L NL AA ++AR++RLRD+GG+IVVDFIDM + N+R V + ++ A+ +DR+ V
Sbjct: 313 IEDTALRTNLEAADEVARQMRLRDLGGLIVVDFIDMEEPRNQRAVEDRLRDAMRQDRARV 372
Query: 581 KVSELSRHGLMEITRKR 597
+VS++S+ GL+E++R+R
Sbjct: 373 QVSKISKFGLLELSRQR 389
>gi|300727912|ref|ZP_07061290.1| ribonuclease, Rne/Rng family [Prevotella bryantii B14]
gi|299774754|gb|EFI71368.1| ribonuclease, Rne/Rng family [Prevotella bryantii B14]
Length = 523
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 215/383 (56%), Gaps = 18/383 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + N + +V D+ +P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYQKYVKQVESDNRKLYPFAKAT 101
Query: 279 SKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
++ ++ +Q ++ G V+VQ+VKE + TKGP LT R+ +LI D++ VS
Sbjct: 102 TQPDLDKEGSIQNVLKAGQDVLVQIVKEPISTKGPRLTGELSFAGRYLVLIPFGDKVSVS 161
Query: 337 RKIT-GVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
KI G ER RLK + +++P G+ +RTVA G + EL +++ L+ W++ + +
Sbjct: 162 SKIKKGEERARLKQLIHSIKPNNCGVIVRTVAEGKRVAELDAEMKILVKRWEDAISKVQK 221
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
P L++ G+ +++++D FN + + V+ +EV +Y+ IAP+
Sbjct: 222 TQ---------KRPQLIYEETGRAVAMLRDLFNPTYENIYVNDENVMNEVKNYVSLIAPE 272
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
+ V+LY ++P+FD FNI ++I + K V +G L+IE TEAL +DVN G+
Sbjct: 273 KTNIVKLYSGKVPIFDNFNITKQIKSSFGKTVNYKHGAYLIIEHTEALHVVDVNSGNRTR 332
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
G +E LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++L+YE + K +++
Sbjct: 333 EKG--QEANALDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQLLYERMCKNMQK 390
Query: 576 DRSMVKVSELSRHGLMEITRKRA 598
DR+ + LS+ GLM+ITR+R
Sbjct: 391 DRAKHNILPLSKFGLMQITRQRV 413
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE E +++ ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKQLVEYQNESRQASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|378824333|ref|ZP_09846844.1| S1 RNA binding domain protein [Sutterella parvirubra YIT 11816]
gi|378596849|gb|EHY30226.1| S1 RNA binding domain protein [Sutterella parvirubra YIT 11816]
Length = 1076
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 185/329 (56%), Gaps = 24/329 (7%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 ITEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGEERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIM------------EHAKSA 396
L P G RT G + EELQ DL LL W+ I E+ +
Sbjct: 153 AMDRLDVPRGMSTIARTAGIGRTTEELQWDLNYLLKLWEAIADAAEPQYELVKEENGRRK 212
Query: 397 ALAADEGVEGA--------VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSY 448
A E + P L+ + ++DYF ++ +++VD+ Y + +
Sbjct: 213 VTAVTESIVNGKPLKRINPAPFLIVEESNLVVRAIRDYFQPEIGEILVDTDEIYEQARQF 272
Query: 449 LQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDV 508
+ + PD+ +RV+ Y+ IPLF +F +E++I S+ VPLP+GG++VI+ TEALV+IDV
Sbjct: 273 MAHVMPDMVNRVKRYNDDIPLFTRFQVEQQIETAYSRTVPLPSGGAIVIDHTEALVAIDV 332
Query: 509 NGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEE 568
N G+ E+ N AA ++AR++RLRD+GG+IV+DFIDMAD N+R V +
Sbjct: 333 NSARAT--RGADIEETAFRTNCEAADEVARQMRLRDLGGLIVIDFIDMADPKNQRAVEQR 390
Query: 569 VKKAVERDRSMVKVSELSRHGLMEITRKR 597
+K A+ DR+ V+ +++SR GLME++R+R
Sbjct: 391 LKDAIRYDRARVQTAKISRFGLMELSRQR 419
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+ +++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATHAEETRVGIVDGQKLIDIDIETAGREARKSNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|326795263|ref|YP_004313083.1| ribonuclease, Rne/Rng family [Marinomonas mediterranea MMB-1]
gi|326546027|gb|ADZ91247.1| ribonuclease, Rne/Rng family [Marinomonas mediterranea MMB-1]
Length = 1095
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 180/307 (58%), Gaps = 14/307 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +RT+LK
Sbjct: 96 EGQEVIVQVDKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGISRRIDGDDRTQLKEAM 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L PE GL +RT G S EELQ DL+ L + W +I + A E P
Sbjct: 156 SGLSTPENGGLIVRTAGVGRSTEELQWDLDYLDTLWSSITKAAS----------EKPAPF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+++ + ++DY + + ++++D Y + +++ + P R++ Y PLF
Sbjct: 206 LIYQESNIVIRAIRDYLRDDIGEVLIDEKGAYQDAINFVMQVMPQFKSRIKQYSDTTPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++F IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL
Sbjct: 266 NRFQIETQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRDIGG++V+DFIDM N++ V +K+A+E DR+ V++ +SR GL
Sbjct: 324 EAADEIARQLRLRDIGGLVVIDFIDMTPLKNQKEVENRMKQALEADRARVQLGRISRFGL 383
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 384 LEMSRQR 390
>gi|114778281|ref|ZP_01453140.1| Ribonuclease E and G [Mariprofundus ferrooxydans PV-1]
gi|114551383|gb|EAU53939.1| Ribonuclease E and G [Mariprofundus ferrooxydans PV-1]
Length = 506
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 136/391 (34%), Positives = 216/391 (55%), Gaps = 37/391 (9%)
Query: 219 VSEVLKNVNGSIIDDGEPEADF----------EDFLEGDHHLD-GESNGFFPSKSEVPDD 267
V VL + + +D G +A F + LE +D G+ N EV DD
Sbjct: 44 VQRVLPGIQAAFVDIGMDKAGFLYAGDIATAKQPALELSEEIDHGDDN-------EVGDD 96
Query: 268 SHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI 327
S S+ + ++ P ++ G +++VQV +E + +KGP LT+ L R+ + +
Sbjct: 97 SSASN----QPRRNAPPIANL--IRDGQELMVQVSREPIASKGPRLTSQVGLAGRYLVYL 150
Query: 328 TSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
G++R++ VER RL IA + PE GL IRTVA G ++Q+DL+ LL W
Sbjct: 151 PHLQHTGIARRLEDPVERERLLAIAHAIAPEKGGLIIRTVAEGKQEADIQQDLDYLLRLW 210
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+I + KSA L L+H+ + L +++DY + +V+K+ +DS Y +
Sbjct: 211 GDIEKRTKSAGLGT----------LIHKELNLYLRVMRDYVDAEVEKIHIDSKEAYESMK 260
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+ + P++ R+ Y P+FD + +EE I + L +RVPL +GG +VI+QTEAL++I
Sbjct: 261 KFARRFMPEVSKRLYYYPGERPIFDVYGVEEAIESALKRRVPLKSGGHIVIDQTEALIAI 320
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G F + E+ NL A +I +LRLR++GGIIVVDFIDM +D NK+ +
Sbjct: 321 DVNSGS--FVGSRNMEETGFKTNLEAVHEIVHQLRLRNLGGIIVVDFIDMQEDENKQRLM 378
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
E + +A++RD++ + +LS GL+E+TRKR
Sbjct: 379 EVLDEALKRDKTKTHIVQLSELGLVEMTRKR 409
>gi|262276055|ref|ZP_06053864.1| ribonuclease E [Grimontia hollisae CIP 101886]
gi|262219863|gb|EEY71179.1| ribonuclease E [Grimontia hollisae CIP 101886]
Length = 1006
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 208/398 (52%), Gaps = 50/398 (12%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PD+ QG + K ++
Sbjct: 51 EAAFVDY-------GSERHGFLPLKEIAREYFPDNYSY---QGRPNIKEV--------LK 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER++LK
Sbjct: 93 EGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERSQLKEAM 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L P+G GL +RT G S EEL+ DL LL+ W+ I A+S P
Sbjct: 153 SGLTLPQGMGLIVRTAGVGKSAEELEWDLNYLLNNWERIQGAAESKT----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+++ +DY + ++++DS + Y++ +Q PD RV+ Y+ +PLF
Sbjct: 203 LIYQESDVIARAFRDYLRRDIGEVLIDSEKVYNQARERIQATRPDFLSRVKRYEGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALQTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGL 380
Query: 591 MEITRKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
+E++R+R +P + HH+C T
Sbjct: 381 LEMSRQRL---------SPS-----LAEASHHICPRCT 404
>gi|237808946|ref|YP_002893386.1| ribonuclease, Rne/Rng family [Tolumonas auensis DSM 9187]
gi|237501207|gb|ACQ93800.1| ribonuclease, Rne/Rng family [Tolumonas auensis DSM 9187]
Length = 950
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 201/366 (54%), Gaps = 34/366 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKS---EVPDDSHTSHPQGTKDSKHTPGEKTWLQVQK 293
EA F D+ E +GF P K E +++T H G + K +++
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPENYTFH--GRPNIKEV--------IKE 96
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 97 GLEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMN 156
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L+ P G GL +RT G S EEL+ DL LL W N ++ A S A P L
Sbjct: 157 GLEVPSGMGLIVRTAGVGKSQEELEWDLNILLKHW-NAIKTASS---------NRAAPFL 206
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + ++++DS + +++ + PD +RV+LY IPLF
Sbjct: 207 IHQESNVIVRAIRDYLRRDIGEILIDSETIFERAKQHIELVRPDFVNRVKLYKSEIPLFT 266
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL
Sbjct: 267 HFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLE 324
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++ +SR GL+
Sbjct: 325 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQDRARIQLGRISRFGLL 384
Query: 592 EITRKR 597
E++R+R
Sbjct: 385 ELSRQR 390
>gi|400294371|ref|ZP_10796162.1| ribonuclease E/G family protein [Actinomyces naeslundii str. Howell
279]
gi|399900506|gb|EJN83470.1| ribonuclease E/G family protein [Actinomyces naeslundii str. Howell
279]
Length = 703
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 188/304 (61%), Gaps = 6/304 (1%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L R+ +L+ G+SRK+ ER+RLK I K
Sbjct: 135 GDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGGSMTGISRKLPDTERSRLKKILKR 194
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ +RT A G S E+L D+E L++ W+ I + A S + G P+LL
Sbjct: 195 IVPDSAGVIVRTAAEGASQEQLTSDVERLVAQWEAIEKKASSVMKGS-----GKAPVLLK 249
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ +++D FNE +K++V RT+ ++ Y+ +++PDL +R+E + +F
Sbjct: 250 GEPELAVRVIRDVFNEDFRKLIVSGDRTWSTISQYIDEVSPDLAERLEHWTGPEEVFAAH 309
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
++E++ ++V LP+GG+LVI++TEA+ IDVN G G G + E+ + NL AA
Sbjct: 310 RVDEQLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR-FTGAGGTLEETVTRNNLEAA 368
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGG++V+DF+DM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 369 EEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECLGRDRTRHQVTEVTSLGLVQM 428
Query: 594 TRKR 597
TRKR
Sbjct: 429 TRKR 432
>gi|315504188|ref|YP_004083075.1| Rne/Rng family ribonuclease [Micromonospora sp. L5]
gi|315410807|gb|ADU08924.1| ribonuclease, Rne/Rng family [Micromonospora sp. L5]
Length = 1089
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 190/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + + G+SRK+ ER RL+ +
Sbjct: 622 LRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPNGNASGISRKLPDTERKRLRDV 681
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L P+G G+ +RT A G S +EL +D++ L + W++I A EG P+
Sbjct: 682 LKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQAKA----------TEGGAPV 731
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +V+D FNE +++V++ Y V SYL ++PDL R+ + +F
Sbjct: 732 LLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLVESYLSHVSPDLVARLRRHAGVADVF 791
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ I+E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 792 AEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVVDVNTGK-YTGSGGNLEETVTRNNL 850
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 851 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 910
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 911 VQMTRKR 917
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR IAVLED LVE + S +VYLG V
Sbjct: 519 ILSESEFLARREAVDRVMVVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQ 578
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 579 NVLPSMEAAFVDIGRGRNAVL 599
>gi|403736772|ref|ZP_10949733.1| putative ribonuclease [Austwickia chelonae NBRC 105200]
gi|403192867|dbj|GAB76503.1| putative ribonuclease [Austwickia chelonae NBRC 105200]
Length = 1045
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 120/304 (39%), Positives = 182/304 (59%), Gaps = 11/304 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ERTRLK I K
Sbjct: 506 GQGVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPQGKMTGISRKLPDTERTRLKKILKE 565
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P G+ +RT A G S EL+ D+E L + W++I + A S G P LLH
Sbjct: 566 IVPPDAGVIVRTAAEGASESELRADVERLANIWESIQKKAAS----------GHAPALLH 615
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ T+ +++D FNE MVV + V Y+ +APDL ++ + +F +F
Sbjct: 616 GEVDLTVRVIRDVFNEDFSSMVVSGEGAWSTVNDYIGSVAPDLAGKLRRWTGDKDVFAEF 675
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I+E++ + ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + N+ AA
Sbjct: 676 RIDEQLAKAMDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FVGAGGNLEETVTKNNIEAA 734
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 735 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVVRRLLECLGRDRTKHQVAEVTSLGLVQM 794
Query: 594 TRKR 597
TRKR
Sbjct: 795 TRKR 798
>gi|371776776|ref|ZP_09483098.1| ribonuclease G [Anaerophaga sp. HS1]
Length = 519
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 220/389 (56%), Gaps = 17/389 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDS-HTSHPQGTK 277
V +++ +N + +D G + F +L+ + +K++ S H P+
Sbjct: 46 VKKIMPGLNAAFVDVGYEKDAFLHYLDLGPQFLSLNKYIQQAKTKKGSISLHKFKPENDI 105
Query: 278 DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSR 337
+ T E + G +V+VQV KE + TKGP LT+ + R ILI DR+ VS+
Sbjct: 106 NKSGTISE----VLSSGQEVLVQVAKEPISTKGPRLTSEISIAGRNLILIPFSDRVSVSQ 161
Query: 338 KITGVE-RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
KI E R+RLK + +++P+ +G+ IRTVA G + EL K+L L+ W++
Sbjct: 162 KINSPEERSRLKRLLLSIKPKNYGVIIRTVAEGKRVAELDKELRTLIKRWED-------- 213
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
A+A ++ P L+ +G+T +I++D N + + +++ + EV Y++ IAP
Sbjct: 214 AIARIRDIKA--PGLVLGEIGRTSAILRDLLNPSFQSVFINNADVFREVKEYVELIAPGR 271
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
V+LY PLFD+F IE++I + + V +G L+IE TEAL IDVN G+
Sbjct: 272 EKIVKLYRGNAPLFDQFGIEKQIKALFGRTVSFKSGAYLIIEHTEALHVIDVNSGNRS-K 330
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
S +E ++VNLAAA++IAR+LRLRD+GGIIVVDFIDM +++ VYE++K+ +E D
Sbjct: 331 SASDQETNAVEVNLAAAEEIARQLRLRDMGGIIVVDFIDMQSAEHRQQVYEKMKQVMESD 390
Query: 577 RSMVKVSELSRHGLMEITRKRAMMEQKAD 605
R+ + LS+ GLM+ITR+R E D
Sbjct: 391 RTKHNILPLSKFGLMQITRQRVRPEMHID 419
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED++LVEL EP +YLG V K++P + AFV++G + + + HY +
Sbjct: 16 IALLEDKRLVELRREPSNVKFAVGDIYLGKVKKIMPGLNAAFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDLVQ 203
+ P F K + + ++ H +ND T + Q+ LVQ
Sbjct: 73 --LGPQFLSLNKYIQQAKTKKGSISLHKFKPENDINKSGTISEVLSSGQEVLVQ 124
>gi|392409912|ref|YP_006446519.1| RNAse G [Desulfomonile tiedjei DSM 6799]
gi|390623048|gb|AFM24255.1| RNAse G [Desulfomonile tiedjei DSM 6799]
Length = 520
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 215/383 (56%), Gaps = 18/383 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +VL + + +D G P A F + HH+ +SE + P G D
Sbjct: 57 VIKVLPGMQAAFVDIGLPRAAFLYVGDIHHHIHDLDFMMNEEESEAQQEEENGLPDGIHD 116
Query: 279 S--KHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
+ +TP E+ +Q+G V+VQ+ KE LG+KG +T++ + R + + + D IG+S
Sbjct: 117 TIPSYTPIEEL---IQEGEDVLVQISKEPLGSKGARITSHISIPGRHLVFMPTVDHIGIS 173
Query: 337 RKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
R+I VER RLK I ++P G+ +RTV+ + E+LQ DL L +W+ I+E K
Sbjct: 174 RRIENEVERQRLKDIIAEIKPPSCGIIVRTVSEHETQEKLQADLTFLQGSWERILEKEKK 233
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
P L++ + L V+D F E V +++VDS Y+ V ++ P
Sbjct: 234 VP----------APSLIYEDLDLCLRGVRDLFTENVSRLIVDSREYYNRVIEFMDTFMPS 283
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
L +VELY+ P+FD F IE E+N L ++V L +GG + I+ TEALV+IDVN G F
Sbjct: 284 LKAQVELYEGEEPIFDYFGIEMELNKALGRKVWLKSGGYINIDFTEALVAIDVNTGR--F 341
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
+ ++ IL NL AA++IA +LRLR+IGGII+VDFIDM +++ V+ +++A+ +
Sbjct: 342 VGKRNLQETILKTNLEAAREIAYQLRLRNIGGIIIVDFIDMDRPTDRDKVFNALQEALRK 401
Query: 576 DRSMVKVSELSRHGLMEITRKRA 598
D+ + ++S GL+++TRKR
Sbjct: 402 DKQKTNILKISELGLVQMTRKRT 424
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM---DIK 145
R+A++E ++VEL LE ++Y G V K++P M AFV+IG R + + DI
Sbjct: 26 RLAMIESGQVVELHLERKGERGIVGNIYKGRVIKVLPGMQAAFVDIGLPRAAFLYVGDIH 85
Query: 146 HY 147
H+
Sbjct: 86 HH 87
>gi|163856052|ref|YP_001630350.1| ribonuclease E [Bordetella petrii DSM 12804]
gi|163259780|emb|CAP42081.1| ribonuclease E [Bordetella petrii]
Length = 995
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P+G + RT G ++EELQ DL L+ W I A+ + A
Sbjct: 153 TMEQLEVPQGMSIIARTAGIGRNVEELQWDLSYLMQLWTAIDSAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN GS E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGSDIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAADEVARQLRLRDLGGLIVIDFIDMEDGKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|386390182|ref|ZP_10074978.1| ribonuclease E [Haemophilus paraphrohaemolyticus HK411]
gi|385693866|gb|EIG24498.1| ribonuclease E [Haemophilus paraphrohaemolyticus HK411]
Length = 990
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 207/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S P+G S
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPEGYVFSGR- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I A+S
Sbjct: 146 DERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKNAAQSRP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKR 597
+ S +SR GL+E++R+R
Sbjct: 374 QFSRISRFGLLEMSRQR 390
>gi|418357600|ref|ZP_12960292.1| ribonuclease E [Aeromonas salmonicida subsp. salmonicida 01-B526]
gi|356689189|gb|EHI53735.1| ribonuclease E [Aeromonas salmonicida subsp. salmonicida 01-B526]
Length = 1017
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 205/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 51 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 94
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 95 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 154
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL LL+ W +I H S A P+L+
Sbjct: 155 LTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQDRTA--------PVLI 204
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D P + ++++ + PD +RV+LY + LF+
Sbjct: 205 HQESNVIVRAIRDYLRRDVGEILIDDPVIFERARAHIELVRPDFLNRVKLYKGEVALFNH 264
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 265 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 322
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 323 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 382
Query: 593 ITRKR 597
++R+R
Sbjct: 383 MSRQR 387
>gi|312795516|ref|YP_004028438.1| ribonuclease E [Burkholderia rhizoxinica HKI 454]
gi|312167291|emb|CBW74294.1| Ribonuclease E (EC 3.1.4.-) [Burkholderia rhizoxinica HKI 454]
Length = 1100
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 187/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 93 LHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G + RT G S EELQ DL LL W+ I AA G G
Sbjct: 153 TMAQLELPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AAANGTRG-- 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+P + + ++++ + PD +V+ Y +P
Sbjct: 203 PLLIYLESSLVIRAIRDYFQPDIGEILIDTPDIHDQARAFMEVVMPDNLGKVKRYHDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAVVIDHTEALVAIDVNSARAT--KGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 321 NLEAADEVARQLRLRDLGGLIVIDFIDMEASKSQREVEQRLKDALKHDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|294664686|ref|ZP_06730019.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292605539|gb|EFF48857.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 711
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 213/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIRE----LLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY V +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++ + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN H GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSHAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 359 NRLQNALKYDRARVQLGRISRFGLMEMSRQR 389
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|302869337|ref|YP_003837974.1| Rne/Rng family ribonuclease [Micromonospora aurantiaca ATCC 27029]
gi|302572196|gb|ADL48398.1| ribonuclease, Rne/Rng family [Micromonospora aurantiaca ATCC 27029]
Length = 1092
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 190/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + + G+SRK+ ER RL+ +
Sbjct: 625 LRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPNGNASGISRKLPDTERKRLRDV 684
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L P+G G+ +RT A G S +EL +D++ L + W++I A EG P+
Sbjct: 685 LKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQAKA----------TEGGAPV 734
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +V+D FNE +++V++ Y V SYL ++PDL R+ + +F
Sbjct: 735 LLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLVESYLSHVSPDLVARLRRHAGVADVF 794
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ I+E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 795 AEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVVDVNTGK-YTGSGGNLEETVTRNNL 853
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 854 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 913
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 914 VQMTRKR 920
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR IAVLED LVE + S +VYLG V
Sbjct: 522 ILSESEFLARREAVDRVMVVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQ 581
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 582 NVLPSMEAAFVDIGRGRNAVL 602
>gi|376315984|emb|CCF99388.1| ribonuclease, Rne/Rng family [uncultured Flavobacteriia bacterium]
Length = 514
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 191/317 (60%), Gaps = 14/317 (4%)
Query: 298 IVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQP 356
+VQ+VKE + TKGP +++ + R+ +L+ DR+ +S+KI + E+ RLK + +++P
Sbjct: 123 LVQIVKEPISTKGPRISSELSIAGRYIVLVPFSDRVSISQKIESKEEKDRLKRLVTSIKP 182
Query: 357 EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAM 416
+GFG+ IRTVA G + EL +DLE L+ W + + + A L P + +
Sbjct: 183 KGFGVIIRTVAQGKKVAELDRDLENLMDRWNAMCKKLRGAHL----------PSKVLSEL 232
Query: 417 GQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIE 476
+ SI++D FN+ + +D Y ++ Y+Q IAP+ + V+ YD + PLF+KF IE
Sbjct: 233 NRGASIIRDVFNDSFSSIYIDDETLYLQIKDYVQSIAPNKENIVKFYDSKTPLFEKFGIE 292
Query: 477 EEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQI 536
+I + V G LVIE TEAL IDVN G+ +++E+ L+VNL AA ++
Sbjct: 293 RQIKTAFGRTVSGSKGTYLVIEHTEALHVIDVNSGNRS-NKTNNQEETALEVNLIAASEV 351
Query: 537 ARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRK 596
AR+LRLRD+GGIIV+DFIDMA +N++ +++ + K + DR+ K+ S+ GL++ITR+
Sbjct: 352 ARQLRLRDMGGIIVIDFIDMAAAANRKKLFDHMVKEMNDDRAKHKILPPSKFGLIQITRQ 411
Query: 597 RAM--MEQKADPENPKS 611
R M K ENP +
Sbjct: 412 RVRPEMNIKTREENPNT 428
>gi|423712672|ref|ZP_17686972.1| rne/Rng family ribonuclease [Bartonella washoensis Sb944nv]
gi|395411465|gb|EJF77987.1| rne/Rng family ribonuclease [Bartonella washoensis Sb944nv]
Length = 874
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 161/529 (30%), Positives = 261/529 (49%), Gaps = 50/529 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A LEE E A
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL----------ALLEEE-------------EKAA 97
Query: 194 EADSQDDLVQFEHNDDEEH--DGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLD 251
++ D++ E N +++ + S + +V ++I D D ED H +
Sbjct: 98 VGENHADVLIEETNKNKKRPRKTKNEKNSIMAADVENNVISDAITTDDAEDAFTDVSHNE 157
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
E G ++ E+P T K K +++ ++VQV+KE G KG
Sbjct: 158 IEMVGAEDAREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGA 207
Query: 312 TLTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAA 368
LT Y L R+ +L+ + R G +SRKIT V+ R RLK I K L P+G G+ +RT A
Sbjct: 208 ALTTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLKEIVKELAVPKGMGVILRTAGA 267
Query: 369 GHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFN 428
+ E+++D E L W + ++ L + P L+H ++D +N
Sbjct: 268 NRTKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLVHEESNLIKRSIRDLYN 317
Query: 429 EKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVP 488
+ + +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V
Sbjct: 318 KNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLHPQVS 377
Query: 489 LPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGI 548
L +GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+
Sbjct: 378 LKSGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRDLAGL 435
Query: 549 IVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
IV+DFIDM +D N R+V +++K ++ DR+ ++V +S GL+E++R+R
Sbjct: 436 IVIDFIDMLEDRNVRIVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQR 484
>gi|381165115|ref|ZP_09874345.1| ribonuclease, Rne/Rng family [Saccharomonospora azurea NA-128]
gi|379257020|gb|EHY90946.1| ribonuclease, Rne/Rng family [Saccharomonospora azurea NA-128]
Length = 985
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 185/304 (60%), Gaps = 6/304 (1%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT L RF + + S G+SRK+ ER RLK I K
Sbjct: 480 GDHVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPSGGATGISRKLPENERRRLKDILKR 539
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ PE G+ IRT + G S EEL +D+ L + W+ I E A +A G +G+ P+LL+
Sbjct: 540 IVPEDAGVIIRTASEGVSEEELGRDVRRLEAQWQVIKEKADAA-----NGKKGSAPVLLY 594
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ +V+D F E K+ + + + +Y+Q +APDL DRV+ Y +F +
Sbjct: 595 EEPDLLVKVVRDLFTEDFSKLEIQGNTAWETIHAYVQHVAPDLLDRVKRYVGTGDVFADY 654
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I+E++ L ++V LP+GG LVI++TEA+ IDVN G G G + E+ + NL +A
Sbjct: 655 RIDEQLMKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTRNNLESA 713
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 714 EEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQM 773
Query: 594 TRKR 597
TRKR
Sbjct: 774 TRKR 777
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVEL 101
L++ Q+ +D + ++S+ F++ ++ ++ +R I VLED LVE
Sbjct: 354 LEAKRQRRRDGREAGRRRAPILSESEFLARRESVDRTMVVAERGDSTQIGVLEDGVLVEH 413
Query: 102 LLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ S +VYLG V ++P+M AF++IG R +++
Sbjct: 414 FVTSAGSGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVL 454
>gi|350561201|ref|ZP_08930040.1| ribonuclease, Rne/Rng family [Thioalkalivibrio thiocyanoxidans ARh
4]
gi|349781308|gb|EGZ35616.1| ribonuclease, Rne/Rng family [Thioalkalivibrio thiocyanoxidans ARh
4]
Length = 1020
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
+++G +++VQV KE GTKG LT Y L R+ +L+ + R G VSR+I G +R L+
Sbjct: 92 LKEGLELLVQVEKEERGTKGAALTTYVSLAGRYLVLMPNNPRAGGVSRRIEGEDRAELRE 151
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+A+ PEG G+ RT G + EELQ DL+ + + W I++ + E
Sbjct: 152 ALAELNIPEGMGVIARTAGVGRTAEELQWDLDYMTALWSAILQAS----------TEADA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++D+ V ++++D Y + +++ + P+ +++LY +P
Sbjct: 202 PALIHQESNVIIRALRDHMRNDVGEVIIDDDLVYRQALEFVERVMPNSLRKIKLYSDPVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ +E +I + + V LP+GG+LVI+ TEAL+SIDVN G E+ L+
Sbjct: 262 LFNRYQVESQIESAFERMVALPSGGALVIDHTEALISIDVNSARAT--KGGDIEETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++ AR+LR+RD+GG+IV+DFIDM + ++R V ++KA+E DR+ V+V +SR
Sbjct: 320 NLEAAEETARQLRIRDLGGLIVIDFIDMGSNKHQREVETRLRKALEMDRARVQVGRISRF 379
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 380 GLLEMSRQR 388
>gi|145299038|ref|YP_001141879.1| ribonuclease E and G [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142851810|gb|ABO90131.1| ribonuclease E and G [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 1020
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 205/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL LL+ W +I H S A P+L+
Sbjct: 158 LTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQDRTA--------PVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D P + ++++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDDPVIFERARAHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKR 597
++R+R
Sbjct: 386 MSRQR 390
>gi|90021266|ref|YP_527093.1| RNAse E [Saccharophagus degradans 2-40]
gi|89950866|gb|ABD80881.1| RNAse E [Saccharophagus degradans 2-40]
Length = 968
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 214/393 (54%), Gaps = 38/393 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ L+ N+ I EP EA F D+ E +GF P K E+ +
Sbjct: 26 DLDIENRLREQKKANIYKGRITRVEPSLEAAFVDY-------GSERHGFLPLK-EISREY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWIL 326
P K G + +Q V++G +VIVQV KE G KG LT + L R+ +L
Sbjct: 78 FAKQP------KDIDG-RIRIQDVVKEGMEVIVQVDKEERGNKGAALTTFISLAGRYLVL 130
Query: 327 ITSCDRIG-VSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLS 384
+ + R G +SR+I G +RT LK +++ P G G+ +RT G EELQ D+ L
Sbjct: 131 MPNNPRAGGISRRIDGDDRTELKDALSQIDVPAGMGIIVRTAGVGRRAEELQWDMNYLAQ 190
Query: 385 TWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHE 444
W +I A+ E P L + + ++DY + +++VD+ Y+
Sbjct: 191 LWASIKTAAE----------EKTAPEFLFQESNVIIRAIRDYLRPDIGEVIVDNQDAYNL 240
Query: 445 VTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALV 504
T++++ + P+ +V+LY++ +PLF++F IE +I + V LP+GGS+VI+ TEAL+
Sbjct: 241 ATAFVEQVMPNYRSKVKLYEEPLPLFNRFQIESQIETAFEREVKLPSGGSIVIDVTEALI 300
Query: 505 SIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRL 564
SID+N G E+ L NL AA +IAR+LRLRD+GG++V+DFIDM N+R
Sbjct: 301 SIDINSSRAT--KGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQRE 358
Query: 565 VYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
V ++ A+E DR+ V+V +SR GL+E++R+R
Sbjct: 359 VENRMRDALEMDRARVQVGRISRFGLLEMSRQR 391
>gi|444379434|ref|ZP_21178614.1| Ribonuclease E [Enterovibrio sp. AK16]
gi|443676438|gb|ELT83139.1| Ribonuclease E [Enterovibrio sp. AK16]
Length = 1012
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 207/398 (52%), Gaps = 50/398 (12%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PD+ QG + K ++
Sbjct: 51 EAAFVDY-------GSERHGFLPLKEIAREYFPDNYSY---QGRPNIKEV--------LK 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER++LK
Sbjct: 93 EGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERSQLKEAM 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L+ P+G GL +RT G S EEL+ DL LL+ W+ I A S P
Sbjct: 153 SGLKLPQGMGLIVRTAGVGKSAEELEWDLNYLLNNWERIQGAADSKP----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+++ +DY + ++++DS + Y++ +Q PD RV+ Y+ +PLF
Sbjct: 203 LIYQESDVIARAFRDYLRRDIGEVLIDSEKVYNQARERIQATRPDFLSRVKRYEGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALQTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGL 380
Query: 591 MEITRKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
+E++R Q+ P + HH+C T
Sbjct: 381 LEMSR------QRLSPS--------LAEASHHICPRCT 404
>gi|418459469|ref|ZP_13030588.1| ribonuclease, Rne/Rng family protein [Saccharomonospora azurea SZMC
14600]
gi|359740551|gb|EHK89392.1| ribonuclease, Rne/Rng family protein [Saccharomonospora azurea SZMC
14600]
Length = 985
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 185/304 (60%), Gaps = 6/304 (1%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT L RF + + S G+SRK+ ER RLK I K
Sbjct: 480 GDHVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPSGGATGISRKLPENERRRLKDILKR 539
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ PE G+ IRT + G S EEL +D+ L + W+ I E A +A G +G+ P+LL+
Sbjct: 540 IVPEDAGVIIRTASEGVSEEELGRDVRRLEAQWQVIKEKADAA-----NGKKGSAPVLLY 594
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ +V+D F E K+ + + + +Y+Q +APDL DRV+ Y +F +
Sbjct: 595 EEPDLLVKVVRDLFTEDFSKLEIQGNTAWETIHAYVQHVAPDLLDRVKRYVGTGDVFADY 654
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I+E++ L ++V LP+GG LVI++TEA+ IDVN G G G + E+ + NL +A
Sbjct: 655 RIDEQLMKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTRNNLESA 713
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 714 EEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQM 773
Query: 594 TRKR 597
TRKR
Sbjct: 774 TRKR 777
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVEL 101
L++ Q+ +D + ++S+ F++ ++ ++ +R I VLED LVE
Sbjct: 354 LEAKRQRRRDGREAGRRRAPILSESEFLARRESVDRTMVVAERGDSTQIGVLEDGVLVEH 413
Query: 102 LLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ S +VYLG V ++P+M AF++IG R +++
Sbjct: 414 FVTSAGSGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVL 454
>gi|161525363|ref|YP_001580375.1| ribonuclease [Burkholderia multivorans ATCC 17616]
gi|160342792|gb|ABX15878.1| ribonuclease, Rne/Rng family [Burkholderia multivorans ATCC 17616]
Length = 1111
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 97 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 141
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 142 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 201
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 202 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 253
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 254 SQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 313
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 314 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 371
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 372 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 431
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 432 QMGKISRFGLMELSRQR 448
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 61 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 120
Query: 138 RPSLMDIK 145
R + K
Sbjct: 121 RHGFLPFK 128
>gi|213693152|ref|YP_002323738.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|384200380|ref|YP_005586123.1| ribonuclease G [Bifidobacterium longum subsp. infantis ATCC 15697 =
JCM 1222]
gi|213524613|gb|ACJ53360.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|320459332|dbj|BAJ69953.1| ribonuclease G [Bifidobacterium longum subsp. infantis ATCC 15697 =
JCM 1222]
Length = 977
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 585 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 644
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 645 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 697
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 698 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYGRIEEYLDTMAPDLKDKLEKWDPAEH 757
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 758 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 816
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 817 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 876
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 877 VTSLGLVQMTRKR 889
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 482 QSQLMEQDFLARRENVDRLMVVREKEQHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 539
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 540 GRVQNVLPSMEAAFVDIGQARNGVL 564
>gi|87306478|ref|ZP_01088625.1| ribonuclease E [Blastopirellula marina DSM 3645]
gi|87290657|gb|EAQ82544.1| ribonuclease E [Blastopirellula marina DSM 3645]
Length = 588
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 189/308 (61%), Gaps = 14/308 (4%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVI 350
++G +V+VQV+KEG+G+KGPTL+ Y + R+ +L+ + R+GVSRKI + R RL+
Sbjct: 177 KRGDEVLVQVIKEGIGSKGPTLSTYISIPGRYLVLMPALGRVGVSRKIEDDQVRRRLRST 236
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
L P +G G +RT + +EL +D+ LL WK I+ K+ D
Sbjct: 237 LLELSPPKGLGFIVRTAGQERNKKELSRDMAYLLRLWKVIVRRLKNTTGPCD-------- 288
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
++ + ++D F+ V + VDS Y +LQ + P +R++ Y+ + PL
Sbjct: 289 --IYEESDMIIRTIRDIFSSDVDSIYVDSEPAYERAKEFLQLVMPRHVNRLKKYESKDPL 346
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F K++++EEI + + VPL GGS+VI+QTEALV+IDVN G+ F + + E+A +N
Sbjct: 347 FHKYHLDEEIARINQREVPLRRGGSIVIDQTEALVAIDVNSGN--FRYDGTAEEAAYQLN 404
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
+ AAK+IAR+LRLRD+GG++V DFIDM + ++R V ++ +V+RDR+ K+ + S G
Sbjct: 405 MMAAKEIARQLRLRDLGGVVVNDFIDMRREKHRRNVERALRDSVKRDRARTKILKTSPFG 464
Query: 590 LMEITRKR 597
L+E+TR+R
Sbjct: 465 LIEMTRQR 472
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN S RIA++ED L E LE + ++Y GVV L P++ AFV+ G
Sbjct: 5 MLINVSQPEECRIAIVEDGILEEFYLERTSQDNYVGNIYKGVVVNLEPSIQAAFVDFGVG 64
Query: 138 RPSLMDIKHYREPFIF 153
+ + I EP F
Sbjct: 65 KNGFLHISDV-EPQYF 79
>gi|94266078|ref|ZP_01289796.1| Ribonuclease E and G [delta proteobacterium MLMS-1]
gi|93453361|gb|EAT03792.1| Ribonuclease E and G [delta proteobacterium MLMS-1]
Length = 513
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 211/383 (55%), Gaps = 20/383 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADF---EDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQG 275
V VL + + ID G F +D L H ++ + + P +G
Sbjct: 46 VVRVLPGMQAAFIDVGLERTGFLYVDDVLVTSHEVEKRLDRCAKGEGSSP----CCGDEG 101
Query: 276 TKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGV 335
+ PG+ + +G +++VQV KE LG+KG LT + L R + + + IG+
Sbjct: 102 EMLLRRVPGQNIDDLLSEGQEILVQVCKEPLGSKGARLTCHITLPCRNLVFMPMTEHIGI 161
Query: 336 SRKITGVE-RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAK 394
SRKI + R L+ ++L+P G G +RTVA S EEL+ D+E LL TW I + A
Sbjct: 162 SRKIEDEDVRRMLRQDIESLRPSGTGFIVRTVAELASNEELEADMEFLLHTWSEIQDRAA 221
Query: 395 SAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAP 454
A VP L++ + TL +V+D F+ +V ++VVD P TY V +++ AP
Sbjct: 222 GAP----------VPSLVYEDLDITLRVVRDVFSPEVDEVVVDEPATYERVLEFVETFAP 271
Query: 455 DLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGM 514
L RV L P+F+ F I+ E+N L +++ L GG +VIE TEAL IDVN G +
Sbjct: 272 HLKGRVCLASGEPPIFESFGIDFEVNRALERKIWLRCGGYIVIEPTEALTVIDVNTGRYV 331
Query: 515 FGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVE 574
+G E+ I N+ AAK+IA +LRLR+IGGII+VDFIDM D+ ++ ++ +K+A +
Sbjct: 332 GKNGL--EETIFKTNMEAAKEIAYQLRLRNIGGIIIVDFIDMEDEEHREAIFNTLKEAAK 389
Query: 575 RDRSMVKVSELSRHGLMEITRKR 597
+D+S + + +S GL+++TRKR
Sbjct: 390 KDKSRLNILRVSEFGLVQMTRKR 412
Score = 39.3 bits (90), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST +LIN++ + RIA+LE L E LE ++Y G V +++P M AF++
Sbjct: 1 MSTELLINATPYEI-RIALLEHGNLAEFHLEHPTEKGLVGNIYKGKVVRVLPGMQAAFID 59
Query: 134 IGNSRPSLMDI 144
+G R + +
Sbjct: 60 VGLERTGFLYV 70
>gi|363420228|ref|ZP_09308322.1| ribonuclease, Rne/Rng family [Rhodococcus pyridinivorans AK37]
gi|359736024|gb|EHK84975.1| ribonuclease, Rne/Rng family [Rhodococcus pyridinivorans AK37]
Length = 954
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 190/309 (61%), Gaps = 8/309 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KG LT L RF + + G+SRK+ ER RLK I
Sbjct: 372 LKPGDQVVVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGSSTGISRKLPDTERKRLKDI 431
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + P G+ IRT A G S EEL +D+ L + W++I E +S L AD + P
Sbjct: 432 LREIVPSEAGVIIRTAAEGVSEEELSRDVTRLQTQWESIRE--QSEKLQADASGQ---PK 486
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELY--DKRIP 468
L+ + +V+D FNE K+V++ ++ V SY++ +APDL RVE Y + +
Sbjct: 487 TLYEEPDLLVKVVRDLFNEDFSKLVIEGDSAWNTVESYIRTVAPDLLPRVERYRSENSVD 546
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F I+E++ L ++V LP+GG+LVI++TEA+ IDVN G G G + E+ +
Sbjct: 547 VFGAHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTRN 605
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R++RLRDIGG+IVVDFIDM +SN+ LV + +A+ RDR+ +VSE++
Sbjct: 606 NLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSL 665
Query: 589 GLMEITRKR 597
GL+++TRKR
Sbjct: 666 GLVQMTRKR 674
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
M ++AVLED LVE + S ++YLG V ++P+M AF++IG R ++
Sbjct: 294 MTQVAVLEDGILVEHFVTTSGSASMVGNIYLGRVQNVLPSMEAAFIDIGRGRNGVL 349
>gi|317482959|ref|ZP_07941963.1| rne/Rng family ribonuclease [Bifidobacterium sp. 12_1_47BFAA]
gi|316915566|gb|EFV36984.1| rne/Rng family ribonuclease [Bifidobacterium sp. 12_1_47BFAA]
Length = 1003
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 611 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 670
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 671 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 723
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 724 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 783
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 784 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 842
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 843 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 902
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 903 VTSLGLVQMTRKR 915
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 508 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 565
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 566 GRVQNVLPSMEAAFVDIGQARNGVL 590
>gi|220912895|ref|YP_002488204.1| ribonuclease, Rne/Rng family [Arthrobacter chlorophenolicus A6]
gi|219859773|gb|ACL40115.1| ribonuclease, Rne/Rng family [Arthrobacter chlorophenolicus A6]
Length = 1151
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 185/307 (60%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER RLK I
Sbjct: 521 LKSGDTVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDVERNRLKRI 580
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K PE G+ +RT A G S EEL D+ L + W+ I + S + A P
Sbjct: 581 LKDRLPEQAGVIVRTAAEGASEEELTHDINRLRAQWEGIESQSSSTKVLA--------PE 632
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + +Y+ +APDL R+E + K +F
Sbjct: 633 LLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIEAYVTYVAPDLVGRLEKWTKDQDIF 692
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I+ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 693 AAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNL 751
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA+++ R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 752 EAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMVECLGRDRTKHQVAEVTSLGL 811
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 812 VQMTRKR 818
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
++I++ F++ ++ + QR I VLED L E + + + +VYLG V
Sbjct: 417 TVITEAEFLARRESVDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKV 476
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 477 QNVLPSMEAAFVDIGRGRNAVL 498
>gi|433456139|ref|ZP_20414196.1| ribonuclease, Rne/Rng family [Arthrobacter crystallopoietes BAB-32]
gi|432196649|gb|ELK53087.1| ribonuclease, Rne/Rng family [Arthrobacter crystallopoietes BAB-32]
Length = 1106
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 192/322 (59%), Gaps = 11/322 (3%)
Query: 278 DSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGV 335
D+ H G+ ++ ++ G V+VQV K+ +G KG LT+ L RF + + G+
Sbjct: 518 DAAHLDGQPRRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPGRFLVYVPGGSMTGI 577
Query: 336 SRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
SRK+ VER RLK I K P+G G+ +RT A G S EEL D+ L + W+ I +KS
Sbjct: 578 SRKLPDVERNRLKKILKEHVPDGAGVIVRTAAEGASEEELMNDINRLRAQWEEIERRSKS 637
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
A P +L+ T+ +V+D FNE K++V + V +Y+ +APD
Sbjct: 638 NKTLA--------PEMLYAEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTVEAYVTYVAPD 689
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
L DR+E + +F I+E+I+ L ++V LP+GGSLVI++TEA+ +DVN G
Sbjct: 690 LVDRLEKWVADEDIFAANRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVVDVNTGK-FT 748
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
G G + E+ + NL AA+++ R+LRLRDIGGIIV+DFIDM ++N+ LV + + + R
Sbjct: 749 GSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVECLGR 808
Query: 576 DRSMVKVSELSRHGLMEITRKR 597
DR+ +V+E++ GL+++TRKR
Sbjct: 809 DRTKHQVAEVTSLGLVQMTRKR 830
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
+I++ F++ ++ + QR IAVLED L E + + + +VYLG V
Sbjct: 430 VITEAEFLARRESVDRQMVVRQREDRIQIAVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQ 489
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 490 NVLPSMEAAFVDIGRGRNAVL 510
>gi|402567166|ref|YP_006616511.1| ribonuclease [Burkholderia cepacia GG4]
gi|402248363|gb|AFQ48817.1| ribonuclease [Burkholderia cepacia GG4]
Length = 1055
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 184/309 (59%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNAGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 383 GLMELSRQR 391
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|291516541|emb|CBK70157.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp. longum
F8]
Length = 1011
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 619 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 678
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 679 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 731
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 732 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 791
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 792 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 850
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 851 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 910
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 911 VTSLGLVQMTRKR 923
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 516 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 573
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 574 GRVQNVLPSMEAAFVDIGQARNGVL 598
>gi|23465843|ref|NP_696446.1| ribonuclease G [Bifidobacterium longum NCC2705]
gi|23326541|gb|AAN25082.1| ribonuclease G [Bifidobacterium longum NCC2705]
Length = 1003
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 611 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 670
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 671 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 723
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 724 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 783
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 784 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 842
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 843 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 902
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 903 VTSLGLVQMTRKR 915
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 508 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 565
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 566 GRVQNVLPSMEAAFVDIGQARNGVL 590
>gi|322690004|ref|YP_004209738.1| ribonuclease G [Bifidobacterium longum subsp. infantis 157F]
gi|384200690|ref|YP_005586437.1| ribonuclease G [Bifidobacterium longum subsp. longum KACC 91563]
gi|419851588|ref|ZP_14374514.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 2-2B]
gi|320461340|dbj|BAJ71960.1| ribonuclease G [Bifidobacterium longum subsp. infantis 157F]
gi|338753697|gb|AEI96686.1| ribonuclease G [Bifidobacterium longum subsp. longum KACC 91563]
gi|386413305|gb|EIJ27918.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 2-2B]
Length = 1014
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 622 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 681
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 682 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 734
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 735 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 794
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 795 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 853
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 854 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 913
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 914 VTSLGLVQMTRKR 926
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 519 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 576
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 577 GRVQNVLPSMEAAFVDIGQARNGVL 601
>gi|393784646|ref|ZP_10372808.1| rne/Rng family ribonuclease [Bacteroides salyersiae CL02T12C01]
gi|392665181|gb|EIY58711.1| rne/Rng family ribonuclease [Bacteroides salyersiae CL02T12C01]
Length = 524
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 187/306 (61%), Gaps = 11/306 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W+ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEEAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V++ Y+E+ Y+ IAPD D V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIYVNNEAVYNEIKDYVSLIAPDRADIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCTNMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRA 598
ITR+R
Sbjct: 409 ITRQRV 414
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG V KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKFVKQTLSDKKKLNSISKATLLPDL---DKDGTVANTLKVGQ 120
>gi|419846514|ref|ZP_14369756.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 1-6B]
gi|386413842|gb|EIJ28418.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 1-6B]
Length = 1014
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 622 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 681
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 682 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 734
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 735 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 794
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 795 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 853
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 854 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 913
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 914 VTSLGLVQMTRKR 926
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 519 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 576
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 577 GRVQNVLPSMEAAFVDIGQARNGVL 601
>gi|221214112|ref|ZP_03587085.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD1]
gi|221166289|gb|EED98762.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD1]
Length = 1056
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 211/377 (55%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I ++A+ +
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAI----EAASQSG 200
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ G P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 201 NPGQ----PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|258651734|ref|YP_003200890.1| ribonuclease, Rne/Rng family [Nakamurella multipartita DSM 44233]
gi|258554959|gb|ACV77901.1| ribonuclease, Rne/Rng family [Nakamurella multipartita DSM 44233]
Length = 1080
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 187/312 (59%), Gaps = 15/312 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
+ G ++ QV K+ +G KG LT L RF + + G+SRK+ ER RLK I
Sbjct: 456 LSSGDTILAQVSKDPVGHKGARLTTQISLPGRFLVYVPGGGATGISRKLPDTERKRLKAI 515
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ PE G+ IRT A G S EEL +D+E L + W+ I A++ +G+ P
Sbjct: 516 LDRIVPEDAGVIIRTAAEGVSEEELARDVERLKAQWEEISRRAQA---------KGSAPT 566
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVD----SPRTYHEVTSYLQDIAPDLCDRVELYD-K 465
LL+ G + +V+D FN + ++VVD + + V+ Y+ +AP+L DR+ +D
Sbjct: 567 LLYAEPGTLIKVVRDLFNSDINRLVVDGDAGNDTVWGPVSDYVNAVAPELADRLVRWDHD 626
Query: 466 RIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAI 525
+F + I+E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 627 GQDVFANYRIDEQIAKALERKVHLPSGGSLVIDRTEAMTVVDVNTGK-YTGSGGNLEETV 685
Query: 526 LDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSEL 585
NL AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + +A+ RDR+ +V+E+
Sbjct: 686 TKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRELVMRRLTEALGRDRTRHQVAEV 745
Query: 586 SRHGLMEITRKR 597
+ GL+++TRKR
Sbjct: 746 TSLGLVQMTRKR 757
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ ++A+LED LVE + ++ SV+LG V ++P+M AFV+IG R +++
Sbjct: 378 LAQVALLEDGILVEHFVSQTGADSLIGSVFLGKVQNVLPSMEAAFVDIGRGRNAVI 433
>gi|198283981|ref|YP_002220302.1| Rne/Rng family ribonuclease [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218665963|ref|YP_002426618.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198248502|gb|ACH84095.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518176|gb|ACK78762.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 782
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 222/406 (54%), Gaps = 39/406 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + S I G EP EA F D+ E +GF P K E+ +
Sbjct: 26 DLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLK-EIAREY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
QG K + V++G ++IVQV KE +KG LT + L R+ +L+
Sbjct: 78 FQQQEQGRKRIQDL--------VREGQEIIVQVDKEERSSKGAALTTFVSLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR+I G +RT+++ + L PE G+ RT G LE LQ+DLE L W
Sbjct: 130 NNPRAGGVSRRIEGEDRTQIRQHLQLLDIPENMGVIARTAGIGQELEALQRDLEYLKQIW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ I+ D A P L+++ + ++D+F+E + ++++D Y+
Sbjct: 190 QAIV----------DTAAPRAAPFLIYQEGNVVVRALRDHFSEDIGEVLIDEEGAYNAAV 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P + R++ YD +PLF ++ IE++I + S+ V L +GG++VI+ TEALV++
Sbjct: 240 QFMGSMMPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVAV 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G + + NL AA++IAR++RLRD+GG+IVVDFIDM ++R V
Sbjct: 300 DVNSGRATKGQDIA--ETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR--AMMEQKADPENPK 610
++K+A++ DR+ V++ +SR GLME++R+R A +E+ + P+
Sbjct: 358 NKLKEALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPR 403
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL++L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 64 RHGFLPLKEIAREYF 78
>gi|407792847|ref|ZP_11139883.1| RNase E [Idiomarina xiamenensis 10-D-4]
gi|407217105|gb|EKE86941.1| RNase E [Idiomarina xiamenensis 10-D-4]
Length = 712
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 204/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++S PD + KD V+
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIARSYFPDGYTFNGRPNIKDV-----------VK 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VI 350
+G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ER+ LK +
Sbjct: 93 EGQQVIVQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERSDLKDAL 152
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
A+ PE GL +RT G S+EEL DL LL+ W+ I++ AADE P
Sbjct: 153 AQLNLPEEMGLIVRTAGVGKSVEELAWDLNVLLNHWQTIVK-------AADER---PAPF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ ++DY + ++++D + + +V ++ I PD +++ Y+ +PLF
Sbjct: 203 LIHQESNVIFRAIRDYLRRDIGEILIDHSQVFEQVKEHVSLIRPDFVSKIKRYEGDVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALQTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++IAR+LRLRD+GG+IV+DFIDM ++R V ++ +++DR+ ++VS +SR GL
Sbjct: 321 EAAEEIARQLRLRDVGGLIVIDFIDMTPTRHQREVENRLRDCLQQDRARIQVSRISRFGL 380
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 381 LEMSRQR 387
>gi|239620892|ref|ZP_04663923.1| ribonuclease G [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|239516153|gb|EEQ56020.1| ribonuclease G [Bifidobacterium longum subsp. infantis CCUG 52486]
Length = 1023
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 631 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 690
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 691 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 743
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 744 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 803
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 804 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 862
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 863 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 922
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 923 VTSLGLVQMTRKR 935
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 528 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 585
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 586 GRVQNVLPSMEAAFVDIGQARNGVL 610
>gi|94499594|ref|ZP_01306131.1| Ribonucleases G and E [Bermanella marisrubri]
gi|94428348|gb|EAT13321.1| Ribonucleases G and E [Oceanobacter sp. RED65]
Length = 873
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 198/363 (54%), Gaps = 30/363 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKQSTSGRPNIKDV--------IEEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
V+VQV KE G KG LT L R+ +L+ + R G +SR+I G ER +++ + +
Sbjct: 95 VVVQVDKEERGNKGAALTTMISLAGRYLVLMPNNARAGGISRRIEGDERNQIRDAMRDVN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P G+ +RT G + EELQ DL+ L W I K A D P LL +
Sbjct: 155 VPNNMGVIVRTAGIGRASEELQWDLDYLCQLWDAI----KGAYDRRD------APCLLLQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++D P Y E S++Q + P ++++LY PLF ++
Sbjct: 205 ESNVVIRAIRDYLRQDIGEVLIDDPVVYDEALSFVQAVMPQYENKIKLYQDSTPLFSRYQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEAL+SID+N GS E L+ NL AA
Sbjct: 265 IEAQIETAYQREVKLPSGGSIVIDTTEALISIDINSSRST--KGSDIEDTALNTNLEAAD 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM + N+R V +K A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTSNKNQREVENRMKDALEIDRARVQVGRISRFGLLEMS 382
Query: 595 RKR 597
R+R
Sbjct: 383 RQR 385
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +EP + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQSEELRVALVDGQRLYDLDIEPTTRQQKKANIYKGKITRVEPSLEAAFVDFGAE 60
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 61 RHGFLPLKEISREYF 75
>gi|422349774|ref|ZP_16430663.1| rne/Rng family ribonuclease [Sutterella wadsworthensis 2_1_59BFAA]
gi|404657983|gb|EKB30863.1| rne/Rng family ribonuclease [Sutterella wadsworthensis 2_1_59BFAA]
Length = 1165
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 187/329 (56%), Gaps = 24/329 (7%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 ITEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA-------------KS 395
+ L P G RT G + EELQ DL LL W+ I E A ++
Sbjct: 153 AMEKLDLPGGMSTIARTAGIGRTTEELQWDLNYLLKLWEAISEAAAPQYELVREENGRRT 212
Query: 396 AALAADEGVEG-------AVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSY 448
L VEG P L+ + ++DYF + +++VD+ Y + +
Sbjct: 213 TQLVKTSVVEGRPLRRANPPPFLIVEESNLVVRAIRDYFQPDIGEVLVDTDEIYEQARQF 272
Query: 449 LQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDV 508
+ + PD+ RV+ Y + IPLF +F IE +I S+ VPLP+GG++VI+ TEALV++DV
Sbjct: 273 MSHVMPDMVGRVKRYREDIPLFTRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAVDV 332
Query: 509 NGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEE 568
N G+ E+ N AA ++AR++RLRD+GG+IV+DFIDMAD N+R V +
Sbjct: 333 NSARAT--RGADIEETAFRTNCEAADEVARQMRLRDLGGLIVIDFIDMADTKNQRAVEQR 390
Query: 569 VKKAVERDRSMVKVSELSRHGLMEITRKR 597
+K A++ DR+ V+++++SR GLME++R+R
Sbjct: 391 LKDALKYDRARVQMAKISRFGLMELSRQR 419
Score = 45.8 bits (107), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+ +++ +KL+++ +E V + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATHAEETRVGIVDGQKLIDIDIETVGREARKSNIYKGVVTRIEPSLEACFVNYGEE 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|189440477|ref|YP_001955558.1| ribonuclese G and E [Bifidobacterium longum DJO10A]
gi|189428912|gb|ACD99060.1| Ribonuclese G and E [Bifidobacterium longum DJO10A]
Length = 1022
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 630 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 689
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 690 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 742
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 743 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 802
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 803 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 861
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 862 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 921
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 922 VTSLGLVQMTRKR 934
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 527 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 584
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 585 GRVQNVLPSMEAAFVDIGQARNGVL 609
>gi|312133798|ref|YP_004001137.1| cafa [Bifidobacterium longum subsp. longum BBMN68]
gi|311773082|gb|ADQ02570.1| CafA [Bifidobacterium longum subsp. longum BBMN68]
Length = 1022
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 630 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 689
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 690 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 742
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 743 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 802
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 803 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 861
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 862 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 921
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 922 VTSLGLVQMTRKR 934
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 527 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 584
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 585 GRVQNVLPSMEAAFVDIGQARNGVL 609
>gi|430761115|ref|YP_007216972.1| Ribonuclease E [Thioalkalivibrio nitratireducens DSM 14787]
gi|430010739|gb|AGA33491.1| Ribonuclease E [Thioalkalivibrio nitratireducens DSM 14787]
Length = 1049
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 187/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
+++G +++VQV KE GTKG LT Y L R+ +L+ + R G VSR+I G +R L+
Sbjct: 92 LKEGLQLLVQVEKEERGTKGAALTTYVSLAGRYLVLMPNNPRAGGVSRRIEGDDRAELRE 151
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+A+ PEG G+ RT G + EELQ DL+ + + W I++ + E
Sbjct: 152 ALAELNIPEGMGVIARTAGVGRTPEELQWDLDYMTALWSAILQAS----------TEADA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++D+ V ++++D Y + +++ + P+ +++LY +P
Sbjct: 202 PALIHQESNVIIRALRDHMRNDVGEVIIDDEMVYRQALEFVERVMPNSLRKIKLYSDPVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF++F +E +I + + V LP+GG+LVI+ TEAL+SIDVN G E+ L
Sbjct: 262 LFNRFQVESQIESAFERLVALPSGGALVIDHTEALISIDVNSARAT--KGGDIEETALTT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++ AR+LR+RD+GG+IV+DFIDM + ++R V ++KA+E DR+ V+V +SR
Sbjct: 320 NLEAAEEAARQLRIRDLGGLIVIDFIDMTSNKHQREVETRLRKALEMDRARVQVGRISRF 379
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 380 GLLEMSRQR 388
>gi|189349900|ref|YP_001945528.1| ribonuclease [Burkholderia multivorans ATCC 17616]
gi|189333922|dbj|BAG42992.1| ribonuclease [Burkholderia multivorans ATCC 17616]
Length = 1054
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 197 SQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|359298638|ref|ZP_09184477.1| ribonuclease E [Haemophilus [parainfluenzae] CCUG 13788]
Length = 994
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 208/377 (55%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S PQG S
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPQGYVFSGR- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IKEGQEVIVQVNKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I A+S A
Sbjct: 146 DERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKTAAESRA--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVESRLREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKR 597
+ + +SR GL+E++R+R
Sbjct: 374 QFARISRFGLLEMSRQR 390
>gi|88855100|ref|ZP_01129765.1| ribonuclease G [marine actinobacterium PHSC20C1]
gi|88815628|gb|EAR25485.1| ribonuclease G [marine actinobacterium PHSC20C1]
Length = 944
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 186/309 (60%), Gaps = 11/309 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L ++ G +V+VQV K+ +G KG LT+ L R+ + + + G+SRK+ ER+RLK
Sbjct: 378 LALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPNGSMSGISRKLPDTERSRLK 437
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K + PE G+ +RT A G + E+L D+ L + W +I
Sbjct: 438 KILKGVLPENVGVIVRTAAEGATEEQLTLDVSRLTNQWADISAQVDKVQ----------A 487
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LLH + I++D FNE K+V++ + +Y++ +APDL DR++ ++ +
Sbjct: 488 PALLHSEPDLLIKIIRDVFNEDFHKLVIEGDDARKTIENYVRSVAPDLLDRLQPHESTVD 547
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
F++F + E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 548 SFEEFRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKN 606
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++
Sbjct: 607 NVEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSL 666
Query: 589 GLMEITRKR 597
GL+++TRK+
Sbjct: 667 GLVQMTRKK 675
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S +Q IAVLED LVE + + +VYLG V ++P+
Sbjct: 278 FLARRESVDRVMVVRSKFDRIQ-IAVLEDGVLVEHYVAKAQDASLIGNVYLGRVQNVLPS 336
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 337 MEAAFVDIGRGRNAVL 352
>gi|419855792|ref|ZP_14378540.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 44B]
gi|386414745|gb|EIJ29291.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 44B]
Length = 1022
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 630 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 689
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 690 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 742
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 743 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 802
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 803 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 861
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 862 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 921
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 922 VTSLGLVQMTRKR 934
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 527 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 584
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 585 GRVQNVLPSMEAAFVDIGQARNGVL 609
>gi|419849942|ref|ZP_14372962.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 35B]
gi|386410469|gb|EIJ25254.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 35B]
Length = 1022
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 630 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 689
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 690 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 742
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 743 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 802
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 803 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 861
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 862 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 921
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 922 VTSLGLVQMTRKR 934
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 527 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 584
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 585 GRVQNVLPSMEAAFVDIGQARNGVL 609
>gi|89889612|ref|ZP_01201123.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium BBFL7]
gi|89517885|gb|EAS20541.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium BBFL7]
Length = 512
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 187/316 (59%), Gaps = 14/316 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVIAKTLQ 355
++VQVVKE + TKGP L+A + R+ +L+ DRI +S+KI E ++RLK + K+++
Sbjct: 122 ILVQVVKEPISTKGPRLSAELSIPGRYVVLVPFSDRISISQKIEDREEKSRLKRLVKSIK 181
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P GFG+ +RTVA G + EL +DL+ L++ W+N+ A P +
Sbjct: 182 PAGFGVIVRTVAKGKLVAELDQDLQNLITKWENMCAKLHKANF----------PSKVMTE 231
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
+ +T SI++D FN+ +VVD E+ YL+ IAP V+ ++ R P+F+K+ I
Sbjct: 232 VSRTNSIMRDVFNDTYTSIVVDDEEVCSEIKDYLKTIAPHKESIVKYHNPRTPVFEKYGI 291
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V + G L+IE TEA+ IDVN G+ +S+E L+ NL AA +
Sbjct: 292 ERQIKTSFGRTVSMSKGAYLIIEHTEAMHVIDVNSGNRS-NKANSQEDTALETNLIAASE 350
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
IAR+LRLRD+GGIIVVDFIDM N++ +YE ++ + DR+ K+ S+ GL++ITR
Sbjct: 351 IARQLRLRDMGGIIVVDFIDMRQAENRKKLYEHMRDEMSEDRAKHKILPPSKFGLIQITR 410
Query: 596 KRAMMEQ--KADPENP 609
+R E K ENP
Sbjct: 411 QRVRQEMNIKTREENP 426
>gi|402304473|ref|ZP_10823542.1| ribonuclease E/G family protein [Haemophilus sputorum HK 2154]
gi|400377742|gb|EJP30612.1| ribonuclease E/G family protein [Haemophilus sputorum HK 2154]
Length = 994
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 208/377 (55%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S PQG S
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPQGYVFSGR- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IKEGQEVIVQVNKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I A+S A
Sbjct: 146 DERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKTAAESRA--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKR 597
+ + +SR GL+E++R+R
Sbjct: 374 QFARISRFGLLEMSRQR 390
>gi|296454938|ref|YP_003662082.1| Rne/Rng family ribonuclease [Bifidobacterium longum subsp. longum
JDM301]
gi|296184370|gb|ADH01252.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp. longum
JDM301]
Length = 1051
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 659 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 718
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 719 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 771
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 772 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 831
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 832 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 890
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 891 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 950
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 951 VTSLGLVQMTRKR 963
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 556 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 613
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG SR ++
Sbjct: 614 GRVQNVLPSMEAAFVDIGQSRNGVL 638
>gi|322691938|ref|YP_004221508.1| ribonuclease G [Bifidobacterium longum subsp. longum JCM 1217]
gi|320456794|dbj|BAJ67416.1| ribonuclease G [Bifidobacterium longum subsp. longum JCM 1217]
Length = 1022
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 630 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 689
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 690 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 742
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 743 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 802
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 803 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 861
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 862 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 921
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 922 VTSLGLVQMTRKR 934
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 527 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 584
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 585 GRVQNVLPSMEAAFVDIGQARNGVL 609
>gi|221201328|ref|ZP_03574367.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD2M]
gi|221208808|ref|ZP_03581806.1| ribonuclease, Rne/Rng family protein [Burkholderia multivorans
CGD2]
gi|221171264|gb|EEE03713.1| ribonuclease, Rne/Rng family protein [Burkholderia multivorans
CGD2]
gi|221178596|gb|EEE11004.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD2M]
Length = 1053
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 211/377 (55%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I ++A+ +
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAI----EAASQSG 200
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ G P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 201 NPGQ----PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|29653829|ref|NP_819521.1| ribonuclease [Coxiella burnetii RSA 493]
gi|29541092|gb|AAO90035.1| ribonuclease E [Coxiella burnetii RSA 493]
Length = 720
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 14/306 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +++VQV KE GTKG LT + L F +L+ + R G +SR+I G ER +L+
Sbjct: 98 GQELVVQVDKEERGTKGAALTTFISLAGSFLVLMPNNPRAGGISRRIEGNERDQLRETIN 157
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L PEG GL +RT G EEL+ DL+ LL W E K AA+A P L
Sbjct: 158 QLSLPEGMGLIVRTAGLGRPKEELEWDLKILLRYW----EAVKQAAVAK------PGPYL 207
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + V+++++D + Y+ + P +R++LY + +PLF
Sbjct: 208 IHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRPQFVERLKLYREHLPLFS 267
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+F IE++I N + + LP+GGSL+I+ +EAL++ID+N G+S E+ L NL
Sbjct: 268 RFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT--RGASIEETALSTNLE 325
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA++IAR+LR+RDIGG+IV+DFIDM N+R V ++ A+ +DR+ +++ +SR GL+
Sbjct: 326 AAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQDRARIQIGRISRFGLL 385
Query: 592 EITRKR 597
E++R+R
Sbjct: 386 EMSRQR 391
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+ +D KL++L +E + ++Y G++T + P++G FVN G+
Sbjct: 4 MLINATQPDEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSE 63
Query: 138 RPSLMDIKHY-REPFI 152
R + +K RE F+
Sbjct: 64 RHGFLPLKEISREYFL 79
>gi|308273585|emb|CBX30187.1| Ribonuclease E [uncultured Desulfobacterium sp.]
Length = 490
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 185/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKV 349
V++G + +VQV K+ + KG LT Y L RF +L+ + +GVSRKI+ E R RLK
Sbjct: 93 VKQGQEFLVQVTKDPIMKKGAMLTTYISLAGRFVVLMPGSEGVGVSRKISDEEERKRLKE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++ PEGFG+ +RT + E+ +D+ LL WKNI + +E
Sbjct: 153 TVSNIKIPEGFGIIVRTAGTDSTKIEISRDIAYLLRLWKNIKSNV----------MEVKS 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LL++ + ++DYF V ++++D P Y EV +++ I+P V+L+ P
Sbjct: 203 PALLYKERHLVVRSIRDYFTSDVNEILIDDPAVYREVRDFIKIISPKHATIVKLFKGDKP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F KF +E +I+++ RV L +GGS+VIEQTEALV+IDVN G H S E+
Sbjct: 263 IFTKFQLENQISSIFENRVKLKSGGSIVIEQTEALVAIDVNSGKAT--HTKSIEETAHAT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IVVDFIDM D + V + K V+ D++ +K ++SR
Sbjct: 321 NLEAAEEIARQLRLRDLGGLIVVDFIDMRDSKHNLEVEKVFKTFVKEDKARIKFGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
>gi|359420993|ref|ZP_09212924.1| putative ribonuclease [Gordonia araii NBRC 100433]
gi|358243266|dbj|GAB10993.1| putative ribonuclease [Gordonia araii NBRC 100433]
Length = 981
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 190/311 (61%), Gaps = 8/311 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT L R+ + + G+SRK+ VER RLK I
Sbjct: 430 LKPGDNVLVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGGSSTGISRKLPDVERKRLKSI 489
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ P+G G+ IRT + G S ++L+ D++ L + W+ I A+ A + + V P
Sbjct: 490 LAKIVPDGAGVIIRTASEGISADDLEADIKRLEAQWRKIDADAQGATGKSGKSVS---PK 546
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP-L 469
L+ + +V+D FNE +K+VV+ + V Y+ D+APDL DRVE ++K P
Sbjct: 547 ALYEEPDLLVRVVRDLFNEDFRKLVVEGQTAWSLVERYITDVAPDLMDRVEKFEKPGPDA 606
Query: 470 FDKF---NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
D F I+E++ L ++V LP+GG+L+IE TEA+ +DVN G G G + E+ +
Sbjct: 607 PDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGK-FTGSGGNLEETVT 665
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRD+GG+IVVDFIDM +SN+ LV + +A+ RDR+ +VSE++
Sbjct: 666 RNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVT 725
Query: 587 RHGLMEITRKR 597
GL+++TRKR
Sbjct: 726 SLGLVQMTRKR 736
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
++AVLED LVE + S ++YLG V ++P M AFV+IG R ++
Sbjct: 354 QVAVLEDGVLVEHFVTTANSTSLVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVL 407
>gi|421471759|ref|ZP_15920016.1| ribonuclease E/G family protein, partial [Burkholderia multivorans
ATCC BAA-247]
gi|400224696|gb|EJO54912.1| ribonuclease E/G family protein, partial [Burkholderia multivorans
ATCC BAA-247]
Length = 759
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 211/377 (55%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 37 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 81
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 82 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 141
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I ++A+ +
Sbjct: 142 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAI----EAASQSG 197
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ G P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 198 NPGQ----PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 253
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 254 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 311
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 312 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 371
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 372 QMGKISRFGLMELSRQR 388
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|416055285|ref|ZP_11579388.1| LOW QUALITY PROTEIN: ribonuclease E [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|348003210|gb|EGY43860.1| LOW QUALITY PROTEIN: ribonuclease E [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
Length = 443
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 205/365 (56%), Gaps = 32/365 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + + + +G
Sbjct: 2 EAAFVDY-------GAERHGFLPLK-EIAREYFPSGYVYQGRPNIRDI--------ISEG 45
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK +
Sbjct: 46 QEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKDALSS 105
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L PEG GL +RT G S EELQ DL+ LL W+ I + ++S P L+
Sbjct: 106 LDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APFLI 155
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +PLF
Sbjct: 156 HQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVPLFSH 215
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL A
Sbjct: 216 YQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNLEA 273
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR GL+E
Sbjct: 274 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRFGLLE 333
Query: 593 ITRKR 597
++R+R
Sbjct: 334 MSRQR 338
>gi|304382112|ref|ZP_07364623.1| rne/Rng family ribonuclease [Prevotella marshii DSM 16973]
gi|304336710|gb|EFM02935.1| rne/Rng family ribonuclease [Prevotella marshii DSM 16973]
Length = 524
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 158/491 (32%), Positives = 253/491 (51%), Gaps = 42/491 (8%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGT 276
V +++ +N S +D G F +L+ L G+ N + +V D +P + T
Sbjct: 46 VKKLMPGLNASFVDVGYERDAFLHYLD----LGGQFNSYGKYLKQVEADRKKLYPFSKAT 101
Query: 277 K--DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ D K L + G +V+VQVVKE + TKGP LT R+ +LI D++
Sbjct: 102 RLPDLKKDGSVTQTLTI--GQEVLVQVVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ FG+ +RTVA G + EL +L+ LL W +
Sbjct: 160 VSSKIKSGEERARLKQLIHSIKPKNFGIIVRTVAEGRRVAELDTELKVLLKRWDD----- 214
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
A+A + + P L+ G+ +++++D F+ + + +++ ++EV Y+ IA
Sbjct: 215 ---AIAKVQKTQKR-PQLIFEETGRAVAMLRDLFDPTYENIYINNEEVFNEVKQYVTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+ Y +P+FD FNI ++I + K V +G L+IE TEAL +DVN G+
Sbjct: 271 PEKAAIVKQYTGNVPIFDNFNITKQIKSGFGKAVNYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A L+VNL AA ++AR+LRLRD+GGIIVVDFIDM +++L+YE + K +
Sbjct: 331 TRSENGQEANA-LEVNLGAADELARQLRLRDMGGIIVVDFIDMNVAEDRQLLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRAMMEQKADPENPKSWPRFILRVDHHMCNYLTSGKRT 633
++DR+ + LS+ GLM+ITR+R P + VD GK
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVR-------------PAMDVNVDETCPTCFGKGKIK 436
Query: 634 RLAVLSSSLKAWILLKVAR-GFTRGAFEVIPYTDDKASENQHQVAISLLRSAEARANKSG 692
+ + L+ I V + G T+ V PY + +Q +SL R + R G
Sbjct: 437 SSFLFTDQLEGKIDHLVNKIGITKFYLHVHPYV----AAYINQGIVSLKRKWQLR---YG 489
Query: 693 KKVTLVPIKKL 703
V ++P +KL
Sbjct: 490 WGVHIIPSQKL 500
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP ++ ++Y+ V KL+P + +FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQNEPRSASFSVGNIYVAKVKKLMPGLNASFVDVGYERDAFL---HY 70
>gi|383809259|ref|ZP_09964780.1| S1 RNA binding domain / ribonuclease E/G family multi-domain
protein [Rothia aeria F0474]
gi|383447960|gb|EID50936.1| S1 RNA binding domain / ribonuclease E/G family multi-domain
protein [Rothia aeria F0474]
Length = 1157
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/304 (39%), Positives = 181/304 (59%), Gaps = 9/304 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I K
Sbjct: 488 GDSVLVQVTKDPIGQKGARLTSQVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKD 547
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+G G+ +RT A G S EEL D+ L + W+ I + A S + A P +L+
Sbjct: 548 KLPDGAGVIVRTAAEGASEEELTHDINRLRAQWEEIQQQANSRKVLA--------PEMLY 599
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + V+D FNE M V + + +Y+ +APDL R++ ++ LFD +
Sbjct: 600 QEPDLMIKTVRDVFNEDFTAMQVQGADAWDSIEAYVTYVAPDLMGRLQKWEGEDDLFDHY 659
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
+ E+++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 660 RVNEQLSKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 718
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 719 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQM 778
Query: 594 TRKR 597
TRKR
Sbjct: 779 TRKR 782
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED L E + + + +VYLG V ++P+M AFV+IG R +++
Sbjct: 409 QIAVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVL 462
>gi|319902743|ref|YP_004162471.1| ribonuclease, Rne/Rng family [Bacteroides helcogenes P 36-108]
gi|319417774|gb|ADV44885.1| ribonuclease, Rne/Rng family [Bacteroides helcogenes P 36-108]
Length = 524
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 188/306 (61%), Gaps = 11/306 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ YHE+ Y+ IAP+ D V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFESIHVNDEAVYHEIKDYVTLIAPERADIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K + +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCQNMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRA 598
ITR+R
Sbjct: 409 ITRQRV 414
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVEL E ++YLG + KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKQLVELQSEGRSLYFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|228474009|ref|ZP_04058750.1| ribonuclease, Rne/Rng family [Capnocytophaga gingivalis ATCC 33624]
gi|228274523|gb|EEK13364.1| ribonuclease, Rne/Rng family [Capnocytophaga gingivalis ATCC 33624]
Length = 513
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 198/322 (61%), Gaps = 14/322 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
++ G ++VQ+VKE + TKGP +++ + R+ +L+ +RI +S+KI + E+ RLK
Sbjct: 116 LKAGQPILVQIVKEPISTKGPRISSELSIAGRYLVLVPFSERISISQKIESKAEKERLKR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
I ++++P+GFG+ IRTVA + +L KDL+ W ++ K A +G P
Sbjct: 176 IVQSIKPKGFGVIIRTVAQDKKVADLDKDLQNSFERW---IQMCKKIA-------QGTFP 225
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
+ M +T ++++D F++ + VD+ Y ++ YLQ+IAPD + V+LY +P+
Sbjct: 226 SKILSEMNRTGALLRDMFDDSFTGIHVDNESLYTQIRDYLQEIAPDKLNIVKLYKSSVPI 285
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+KF+IE +I L + V + G LVIE TEAL IDVN G+ ++E +VN
Sbjct: 286 FEKFHIERQIKTGLGRTVSMTKGAYLVIEHTEALHVIDVNSGNHS-NKAENQETTAFEVN 344
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA +IAR+LRLRD+GGIIVVDFIDM++ N++ +++ +++ ++ DR+ K+ S+ G
Sbjct: 345 LIAATEIARQLRLRDMGGIIVVDFIDMSNGENRQKLFDALREEMKDDRAKHKILPPSKFG 404
Query: 590 LMEITRKRAMME--QKADPENP 609
L++ITR+R E K ENP
Sbjct: 405 LIQITRQRVRPEINIKTKEENP 426
>gi|308049099|ref|YP_003912665.1| RNAse E [Ferrimonas balearica DSM 9799]
gi|307631289|gb|ADN75591.1| RNAse E [Ferrimonas balearica DSM 9799]
Length = 1099
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 180/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE GTKG LT + L + +L+ + R G +SR+I G ER+ LK
Sbjct: 94 IKEGQEVIVQVDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERSELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G GL +RT G + EEL DL LL W I + A S
Sbjct: 154 ALSKLQVPQGMGLIVRTAGVGKAAEELADDLRVLLHHWDAIKQAADSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL+H+ + ++DY + ++++D PR + + ++ + PD +++ Y +P
Sbjct: 204 PILIHQESNVIVRAIRDYLRSDIGEILIDHPRIFEQAKEHISLVRPDALSKLKQYQSEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL ++D+N G E+ L
Sbjct: 264 LFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTAVDINSARAT--KGGDIEETALQT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMGPVRHQREVENRLRDAVRQDRARVQIGRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|296136843|ref|YP_003644085.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12]
gi|295796965|gb|ADG31755.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12]
Length = 998
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 210/377 (55%), Gaps = 31/377 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +++ EP EA F D+ E H GF P K + S +G S+
Sbjct: 40 NIYKAVVTRVEPSLEACFVDYGEERH-------GFLPFK----EISRQYFKEGVSPSQA- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ + +G +++VQV KE G KG LT L R+ +L+ + R G VSR+I G
Sbjct: 88 ---RIQDVITEGQQLLVQVEKEERGNKGAALTTIISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG L RT G S EELQ DL LL W SA A
Sbjct: 145 EDRQELRETMDQLQHPEGMSLIARTAGIGRSAEELQWDLNYLLKLW--------SAVRDA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
E +GA L+++ + ++DYF + ++++D+ + + ++ + PD +RV
Sbjct: 197 SETQKGA--FLIYQESSLVIRAIRDYFTSDIGEILIDTEDVFEQARQFMLHVMPDTVERV 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE++I S+ V LP GG++VI+ TEALV++DVN G++
Sbjct: 255 KRYRDDLPLFSRFQIEQQIETAYSRTVNLPAGGAIVIDHTEALVAVDVNSARST--RGNA 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E L NL AA ++AR++RLRD+GG+IVVDFIDM + N+R V + ++ A+ +DR+ V
Sbjct: 313 IEDTALRTNLEAADEVARQMRLRDLGGLIVVDFIDMEEPRNQRAVEDRLRDAMRQDRARV 372
Query: 581 KVSELSRHGLMEITRKR 597
+VS++S+ GL+E++R+R
Sbjct: 373 QVSKISKFGLLELSRQR 389
>gi|403527574|ref|YP_006662461.1| ribonuclease G [Arthrobacter sp. Rue61a]
gi|403230001|gb|AFR29423.1| ribonuclease G [Arthrobacter sp. Rue61a]
Length = 1104
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 185/307 (60%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER RLK I
Sbjct: 488 LKSGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDVERNRLKRI 547
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K PE G+ +RT A G S EEL D+ L + W+ I A S + A P
Sbjct: 548 LKDRLPENAGVIVRTAAEGASEEELTHDINRLRAQWEGIEGQASSTKVLA--------PE 599
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + +Y+ +APDL R+E + K +F
Sbjct: 600 LLYGEPDLTIKVVRDVFNEDFSKLIVSGDDAWDTIEAYVTYVAPDLVGRLEKWTKDQDIF 659
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I+ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 660 AAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNL 718
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA+++ R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 719 EAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMVECLGRDRTKHQVAEVTSLGL 778
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 779 VQMTRKR 785
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
+I++ F++ ++ + QR I VLED L E + + + +VYLG V
Sbjct: 385 VITEAEFLARRESVDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQ 444
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 445 NVLPSMEAAFVDIGRGRNAVL 465
>gi|387901762|ref|YP_006332101.1| ribonuclease E [Burkholderia sp. KJ006]
gi|387576654|gb|AFJ85370.1| Ribonuclease E [Burkholderia sp. KJ006]
Length = 1063
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 184/309 (59%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNSGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 383 GLMELSRQR 391
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|406911450|gb|EKD51238.1| hypothetical protein ACD_62C00302G0003 [uncultured bacterium]
Length = 552
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 159/512 (31%), Positives = 243/512 (47%), Gaps = 74/512 (14%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148
RIA+LE L EL +E ++Y G + +++P M AFV+IG
Sbjct: 15 RIALLERGVLAELSIERETEMQVAGNIYFGRINRVLPGMQAAFVDIG------------- 61
Query: 149 EPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDLVQFEHND 208
LE+ A Y D S E V E + + +
Sbjct: 62 ------------------------LEKAAFLYVADIVSDMFEGVFEDEVDEVGKNGDAGG 97
Query: 209 DEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D+E GD DD EP + D + + + N +S S
Sbjct: 98 DDEEGGDKAP-------------DDAEPTDSGSENGGSDQNANKDRNQGRGGRSSSVRKS 144
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P + V++G ++VQV KE + TKG +T+ L R+ + +
Sbjct: 145 RY---------RRAPLPRIEDVVKEGQTIVVQVAKEPIRTKGARITSQISLPGRYLVYMP 195
Query: 329 SCDRIGVSRKITGV-ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK 387
+ + +GVSR+IT ER RLK I + +P G RT + G E++ +D+ L W+
Sbjct: 196 TVNHVGVSRRITSYDERIRLKEILRKNKPAQGGFIARTNSIGTCEEKIVEDMNNLKQIWQ 255
Query: 388 NIME-HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I + KS A P LL++ M L V+D F+ ++ ++V+DS + V
Sbjct: 256 EIYKKQEKSRA-----------PSLLYQDMDIVLRAVRDNFSREITRLVIDSREHHTSVV 304
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ P+L DR+E YDK +P+FD + IE EIN L K++ L +GG L+I+ +EAL SI
Sbjct: 305 DFMNKCMPELVDRIEYYDKDLPIFDAYGIESEINRALGKKIWLKSGGYLIIDSSEALTSI 364
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G F E+ IL NL A ++IA +L+LR IGGI+++DFIDM ++ VY
Sbjct: 365 DVNTGR--FVGKRDFEETILTTNLEAVEEIAYQLKLRSIGGIVIIDFIDMNKYQHRMKVY 422
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRA 598
+K A++ DRS +S +S GL+E+TRKR
Sbjct: 423 YTLKDALKNDRSKTTISRISDLGLVEMTRKRT 454
>gi|134295141|ref|YP_001118876.1| ribonuclease E [Burkholderia vietnamiensis G4]
gi|134138298|gb|ABO54041.1| RNAse E [Burkholderia vietnamiensis G4]
Length = 1074
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 184/309 (59%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNSGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 383 GLMELSRQR 391
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|321496355|gb|EAQ39892.2| ribonuclease, Rne/Rng family [Dokdonia donghaensis MED134]
Length = 512
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 187/316 (59%), Gaps = 14/316 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQ 355
V+VQ+ KE + TKGP +++ + R+ +L+ DRI +S+KI + E+ RLK + +++
Sbjct: 118 VLVQIAKEPISTKGPRISSELSIAGRYIVLVPFSDRISISQKIESKEEKARLKRLVTSIR 177
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFG+ +RTVA G + EL KDL+ L+ W + + K A P +
Sbjct: 178 PKGFGVIVRTVAQGVKVAELDKDLQNLVDKWTTMSKKIKGAHH----------PSKVLGE 227
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
M + SI++D FN+ + VD Y+++ YL +IAP V+LY+ ++P+F+KF I
Sbjct: 228 MNRASSILRDIFNDSFTSITVDDETLYYQIKEYLSEIAPHKESIVKLYNSQVPIFEKFGI 287
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V + G LVIE TEAL +DVN G+ S+E L+VN+ AA +
Sbjct: 288 ERQIKTSFGQTVSMSRGAYLVIEHTEALHVVDVNSGNRS-NKAKSQEDTALEVNMIAASE 346
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
+AR+L LRD+GGIIVVDFIDMA N+R ++ +K ++ DR+ K+ S+ GL++ITR
Sbjct: 347 VARQLSLRDMGGIIVVDFIDMAKAENRRKLFNHLKDEMKEDRAKHKILPPSKFGLIQITR 406
Query: 596 KRAM--MEQKADPENP 609
+R M K ENP
Sbjct: 407 QRVRPEMNIKTREENP 422
>gi|297243303|ref|ZP_06927237.1| ribonuclease G/E [Gardnerella vaginalis AMD]
gi|296888710|gb|EFH27448.1| ribonuclease G/E [Gardnerella vaginalis AMD]
Length = 1079
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 578 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 637
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E ++KDL+ L+ W+ I AK +E + G
Sbjct: 638 AIVSKIAPKDMGVIIRTAADGASEESIEKDLDSLVKQWERI--EAKR-----EEYLHGKR 690
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + YL+ +APDL +VE +D
Sbjct: 691 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRIDEYLEMMAPDLRSKVEYWDPAEH 750
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 751 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 809
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 810 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 869
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 870 VTSLGLVQMTRKR 882
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
++LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 475 QNLLMEQDFLARRENVERLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYL 532
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G + ++P+M AFV+IG +R ++
Sbjct: 533 GRIQNVLPSMEAAFVDIGQARNGVL 557
>gi|154706471|ref|YP_001424928.1| ribonuclease E [Coxiella burnetii Dugway 5J108-111]
gi|154355757|gb|ABS77219.1| ribonuclease E [Coxiella burnetii Dugway 5J108-111]
Length = 720
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 14/306 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +++VQV KE GTKG LT + L F +L+ + R G +SR+I G ER +L+
Sbjct: 98 GQELVVQVDKEERGTKGAALTTFISLAGSFLVLMPNNPRAGGISRRIEGDERDQLRETIN 157
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L PEG GL +RT G EEL+ DL+ LL W E K AA+A P L
Sbjct: 158 QLSLPEGMGLIVRTAGLGRPKEELEWDLKILLRYW----EAVKQAAVAK------PGPYL 207
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + V+++++D + Y+ + P +R++LY + +PLF
Sbjct: 208 IHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRPQFVERLKLYREHLPLFS 267
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+F IE++I N + + LP+GGSL+I+ +EAL++ID+N G+S E+ L NL
Sbjct: 268 RFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT--RGASIEETALSTNLE 325
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA++IAR+LR+RDIGG+IV+DFIDM N+R V ++ A+ +DR+ +++ +SR GL+
Sbjct: 326 AAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQDRARIQIGRISRFGLL 385
Query: 592 EITRKR 597
E++R+R
Sbjct: 386 EMSRQR 391
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+ +D KL++L +E + ++Y G++T + P++G FVN G+
Sbjct: 4 MLINATQPDEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSE 63
Query: 138 RPSLMDIKHY-REPFI 152
R + +K RE F+
Sbjct: 64 RHGFLPLKEISREYFL 79
>gi|88798807|ref|ZP_01114390.1| ribonuclease E [Reinekea blandensis MED297]
gi|88778570|gb|EAR09762.1| ribonuclease E [Reinekea blandensis MED297]
Length = 868
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++GT+VIVQV KE G KG LT L R+ +L+ + R G +SR+I G ER +++
Sbjct: 90 IKEGTEVIVQVDKEERGNKGAALTTMVSLAGRYLVLMPNNARAGGISRRIEGDERAQIRE 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ + P+G G+ +RT G S EELQ DL+ LL W +I E +++
Sbjct: 150 ALQNVNLPDGMGVIVRTAGIGRSSEELQWDLDYLLQLWGSIKEASQTRP----------A 199
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+ + L ++DY + + +++D+ Y ++Q + P ++++LY+ +P
Sbjct: 200 PFLILQESNVILRAIRDYLRQDIDAVMIDNKDAYQYALDFVQKVMPGYANKIKLYEDTVP 259
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ IE +I + V LP+GGS+VI+ TEALVSID+N G E+ +
Sbjct: 260 LFNRYQIETQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGVDIEETAFNT 317
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AA++IAR+LRLRD+GG++V+DFIDM ++R + ++K+A DR+ V++ LSR
Sbjct: 318 NMEAAEEIARQLRLRDMGGLVVIDFIDMNQAKHQREIEAKIKEATTSDRARVQIGRLSRF 377
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 378 GLLEMSRQR 386
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV G
Sbjct: 1 MLINATQAEELRVALVDGQKLYDLDIEAGFREQKKANIYKGRITRIEPSLEAAFVEFGAE 60
Query: 138 RPSLMDIKHY-REPFIFPPFRCRTKKQEV 165
R + +K +E FI P R+ +E+
Sbjct: 61 RHGFLPLKEIAKEYFIDPKMSSRSNIKEL 89
>gi|21231532|ref|NP_637449.1| ribonuclease E [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768412|ref|YP_243174.1| ribonuclease E [Xanthomonas campestris pv. campestris str. 8004]
gi|21113213|gb|AAM41373.1| ribonuclease E [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66573744|gb|AAY49154.1| ribonuclease E [Xanthomonas campestris pv. campestris str. 8004]
Length = 1187
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 214/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +V+VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIREL----LREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK + K P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKDALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY + +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++Q + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQR 389
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|359771874|ref|ZP_09275316.1| putative ribonuclease [Gordonia effusa NBRC 100432]
gi|359310988|dbj|GAB18094.1| putative ribonuclease [Gordonia effusa NBRC 100432]
Length = 999
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 188/311 (60%), Gaps = 13/311 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT L R+ + + G+SRK+ ER RL+ I
Sbjct: 473 LKPGDSVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRKLPDTERKRLRSI 532
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L P+ G+ IRT + G S EEL D+E L + W +I E A E +G
Sbjct: 533 LGKLVPDDAGVIIRTASEGVSAEELGADIERLEAQWNSISE--------AVESKKGNGTK 584
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP-L 469
L+ + +V+D FNE +K+VV+ P+ ++ V Y+ D+APDL +RVE ++K P
Sbjct: 585 ALYEEPDLLVRVVRDLFNEDFRKLVVEGPKAWNLVERYISDVAPDLMERVEKFEKTGPDA 644
Query: 470 FDKF---NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
D F I+E++ L ++V LP+GG+L+IE TEA+ +DVN G G G + E+ +
Sbjct: 645 PDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGK-FTGSGGNLEETVT 703
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRDIGG+I+VDFIDM +SN+ LV + +A+ RDR+ +VSE++
Sbjct: 704 RNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVT 763
Query: 587 RHGLMEITRKR 597
GL+++TRKR
Sbjct: 764 SLGLVQMTRKR 774
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSR 138
++AVLED LVE + S+ ++YLG V ++P M AFV+IG R
Sbjct: 397 QVAVLEDGVLVEHFVTTETSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGR 446
>gi|237653102|ref|YP_002889416.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T]
gi|237624349|gb|ACR01039.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T]
Length = 1061
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 142/391 (36%), Positives = 212/391 (54%), Gaps = 37/391 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ ++I EP EA F D+ D H GF P K +
Sbjct: 26 DLDIESAAKEERKSNIYKAVITRIEPSLEAAFVDY-GADRH------GFLPFK-----EI 73
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
S+ Q D+K + E +++G ++IVQV K+ G KG LT Y L R+ +L+
Sbjct: 74 SRSYFQPGADAKASIKEA----LKEGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ER L+ L P+G L RT A G S EELQ DL LL W
Sbjct: 130 NNPRGGGVSRRVEGDERAELRENMDQLDVPQGMSLIARTAAIGRSAEELQWDLNYLLQLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A +G GA L+++ + ++DYF + ++++D+ + + T
Sbjct: 190 TAIE--------GAAQGQSGA--FLIYQEGSLVIRAIRDYFQPDIGEILIDTDDIFEQAT 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P RV+ Y +PLF +F IE +I + S++V LP+GG++VI+ TEALVSI
Sbjct: 240 QFMAHVMPGNVARVKRYSDDVPLFSRFQIEHQIESAYSRQVNLPSGGAVVIDHTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G GS E+ N AA +IAR+LRLRD+GG+IV+DFIDM N+R V
Sbjct: 300 DVNSGRAT--KGSDIEETAFRTNCEAADEIARQLRLRDLGGLIVIDFIDMESAKNQREVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++ A+ DR+ V+ ++SR GL+E++R+R
Sbjct: 358 NRLRDALRHDRARVQTGKISRFGLLELSRQR 388
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEERKSNIYKAVITRIEPSLEAAFVDYGAD 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K + P
Sbjct: 64 RHGFLPFKEISRSYFQP 80
>gi|115351040|ref|YP_772879.1| ribonuclease [Burkholderia ambifaria AMMD]
gi|115281028|gb|ABI86545.1| RNAse E [Burkholderia ambifaria AMMD]
Length = 1068
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGIDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|415708487|ref|ZP_11462501.1| ribonuclease G [Gardnerella vaginalis 6420LIT]
gi|415710153|ref|ZP_11463613.1| ribonuclease G [Gardnerella vaginalis 6420B]
gi|388054386|gb|EIK77324.1| ribonuclease G [Gardnerella vaginalis 6420LIT]
gi|388055665|gb|EIK78562.1| ribonuclease G [Gardnerella vaginalis 6420B]
Length = 1092
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 597 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 656
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E ++KDL+ L+ W+ I AK +E + G
Sbjct: 657 AIVSKIAPKDMGVIIRTAADGASEESIEKDLDSLVKQWERI--EAKR-----EEYLHGKR 709
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + YL+ +APDL +VE +D
Sbjct: 710 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRIDEYLEMMAPDLRSKVEYWDPAEH 769
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 770 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 828
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 829 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 888
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 889 VTSLGLVQMTRKR 901
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
++LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 494 QNLLMEQDFLARRENVERLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYL 551
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G + ++P+M AFV+IG +R ++
Sbjct: 552 GRIQNVLPSMEAAFVDIGQARNGVL 576
>gi|358462010|ref|ZP_09172156.1| ribonuclease, Rne/Rng family [Frankia sp. CN3]
gi|357072359|gb|EHI81903.1| ribonuclease, Rne/Rng family [Frankia sp. CN3]
Length = 1286
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 193/319 (60%), Gaps = 14/319 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 728 LKPGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPDGQSAGISRKLPDTERSRLKSI 787
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I A+ A + P
Sbjct: 788 LKKITPEDGGVIVRTAAEGASEQELERDIERLAAQWEDIARKAQKA----------SAPA 837
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +++D FNE +++V + +Y+ +APDL RV + I LF
Sbjct: 838 LLYGEPDLVVRVIRDIFNEDFTELLVQGSGEAETIENYVDMVAPDLRPRVRRHVGTIDLF 897
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ ++E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 898 TEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGKGGNLEETVTKNNL 956
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 957 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 1016
Query: 591 MEITRKR---AMMEQKADP 606
+++TRKR ++E ++P
Sbjct: 1017 VQMTRKRVGQGLLEAYSEP 1035
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED LVE + S +VYLG V ++ +M AFV+IG R +++
Sbjct: 652 QIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDIGKGRNAVL 705
>gi|221135370|ref|ZP_03561673.1| ribonuclease [Glaciecola sp. HTCC2999]
Length = 968
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 183/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ER+ LK
Sbjct: 94 VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERSELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL+ W+ I A+ E
Sbjct: 154 TLDQLELPKGMGLIVRTAGVGKSFEELAWDLKVLLTHWEAITAVAE----------ERPA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D P + + +++ + PD +RV+ Y +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEIIIDKPAIFEQALQHIELVRPDFANRVKPYTGDVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ +
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETAFNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+D+IDM+ + ++R V +K AV DR+ +++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDYIDMSVNKHQREVENRMKDAVSGDRARIQLGRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQSEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAD 63
Query: 138 RPSLMDIK----HY 147
R + +K HY
Sbjct: 64 RHGFLPLKEIARHY 77
>gi|302343376|ref|YP_003807905.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075]
gi|301639989|gb|ADK85311.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075]
Length = 505
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE-----SNGFFPSKSEVPDDSHTSHP 273
V+ VL + + +D G P+A F GD D + G +P + E +
Sbjct: 46 VARVLPGMQAAFVDIGLPKAAF--LYVGDVRPDVSFDEYLAPGAYPDEPEDVAQGGVAAE 103
Query: 274 QGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRI 333
QG + +Q+G +++VQV KE LG+KG +T + L +L+ + + I
Sbjct: 104 QGQVRIEQ--------MLQQGQELMVQVAKEPLGSKGARITTHITLPGHNLVLMPTLNHI 155
Query: 334 GVSRKITGV-ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEH 392
GVSR+I ER RL+ I + + P G+G RT + ++L+ +++ L+S W++I+
Sbjct: 156 GVSRRIADEDERNRLRQIIEQMAPGGYGFIARTASENQEPDKLRAEMDFLVSLWESILLR 215
Query: 393 AKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDI 452
A VP +LHR + +L V+D +V M++D + Y+EV ++
Sbjct: 216 RGRAM----------VPNMLHRDLSVSLRAVRDLCTREVDHMIIDCEQEYYEVVEFVSTF 265
Query: 453 APDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGH 512
P L VE Y R P+FD + +E E+ L ++V L +GG +VIE+TEAL +IDVN G
Sbjct: 266 LPRLVPCVEFYRGREPIFDAYGVEHELTRALGRKVWLKSGGYVVIEKTEALTTIDVNTGR 325
Query: 513 GMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKA 572
+ GH + E+ IL NL A K+IA ++RLRD+GG+IV+DFIDM ++N+ V E +K A
Sbjct: 326 YVGGH--NLEETILKTNLEAVKEIACQIRLRDLGGLIVIDFIDMEKEANRLRVVESLKDA 383
Query: 573 VERDRSMVKVSELSRHGLMEITRKR 597
+ DRS V +S GL+E+TRKR
Sbjct: 384 LRGDRSKTNVLAMSPLGLVEMTRKR 408
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LIN+ R+A+LE+ VE+ E K ++YLG V +++P M AFV+
Sbjct: 1 MSATLLINAR-SYETRVALLENGHCVEVYTERHKHGSLAGNIYLGRVARVLPGMQAAFVD 59
Query: 134 IGNSRPSLMDIKHYREPFIFPPF 156
IG + + + + R F +
Sbjct: 60 IGLPKAAFLYVGDVRPDVSFDEY 82
>gi|212213030|ref|YP_002303966.1| ribonuclease E [Coxiella burnetii CbuG_Q212]
gi|212011440|gb|ACJ18821.1| ribonuclease E [Coxiella burnetii CbuG_Q212]
Length = 720
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 14/306 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +++VQV KE GTKG LT + L F +L+ + R G +SR+I G ER +L+
Sbjct: 98 GQELVVQVDKEERGTKGAALTTFISLAGSFLVLMPNNPRAGGISRRIEGDERDQLRETIN 157
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L PEG GL +RT G EEL+ DL+ LL W E K AA+A P L
Sbjct: 158 QLSLPEGMGLIVRTAGLGRPKEELEWDLKILLRYW----EAVKQAAVAK------PGPYL 207
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + V+++++D + Y+ + P +R++LY + +PLF
Sbjct: 208 IHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRPQFVERLKLYREHLPLFS 267
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+F IE++I N + + LP+GGSL+I+ +EAL++ID+N G+S E+ L NL
Sbjct: 268 RFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT--RGASIEETALSTNLE 325
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA++IAR+LR+RDIGG+IV+DFIDM N+R V ++ A+ +DR+ +++ +SR GL+
Sbjct: 326 AAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQDRARIQIGRISRFGLL 385
Query: 592 EITRKR 597
E++R+R
Sbjct: 386 EMSRQR 391
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+ +D KL++L +E + ++Y G++T + P++G FVN G+
Sbjct: 4 MLINATQPDEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSE 63
Query: 138 RPSLMDIKHY-REPFI 152
R + +K RE F+
Sbjct: 64 RHGFLPLKEISREYFL 79
>gi|165920603|ref|ZP_02219574.1| ribonuclease, Rne/Rng family [Coxiella burnetii Q321]
gi|165916805|gb|EDR35409.1| ribonuclease, Rne/Rng family [Coxiella burnetii Q321]
Length = 720
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 14/306 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +++VQV KE GTKG LT + L F +L+ + R G +SR+I G ER +L+
Sbjct: 98 GQELVVQVDKEERGTKGAALTTFISLAGSFLVLMPNNPRAGGISRRIEGDERDQLRETIN 157
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L PEG GL +RT G EEL+ DL+ LL W E K AA+A P L
Sbjct: 158 QLSLPEGMGLIVRTAGLGRPKEELEWDLKILLRYW----EAVKQAAVAK------PGPYL 207
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + V+++++D + Y+ + P +R++LY + +PLF
Sbjct: 208 IHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRPQFVERLKLYREHLPLFS 267
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+F IE++I N + + LP+GGSL+I+ +EAL++ID+N G+S E+ L NL
Sbjct: 268 RFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT--RGASIEETALSTNLE 325
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA++IAR+LR+RDIGG+IV+DFIDM N+R V ++ A+ +DR+ +++ +SR GL+
Sbjct: 326 AAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQDRARIQIGRISRFGLL 385
Query: 592 EITRKR 597
E++R+R
Sbjct: 386 EMSRQR 391
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+ +D KL++L +E + ++Y G++T + P++G FVN G+
Sbjct: 4 MLINATQPDEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSE 63
Query: 138 RPSLMDIKHY-REPFI 152
R + +K RE F+
Sbjct: 64 RHGFLPLKEISREYFL 79
>gi|153208856|ref|ZP_01947078.1| ribonuclease, Rne/Rng family [Coxiella burnetii 'MSU Goat Q177']
gi|212218909|ref|YP_002305696.1| ribonuclease E [Coxiella burnetii CbuK_Q154]
gi|120575645|gb|EAX32269.1| ribonuclease, Rne/Rng family [Coxiella burnetii 'MSU Goat Q177']
gi|212013171|gb|ACJ20551.1| ribonuclease E [Coxiella burnetii CbuK_Q154]
Length = 720
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 14/306 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +++VQV KE GTKG LT + L F +L+ + R G +SR+I G ER +L+
Sbjct: 98 GQELVVQVDKEERGTKGAALTTFISLAGSFLVLMPNNPRAGGISRRIEGDERDQLRETIN 157
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L PEG GL +RT G EEL+ DL+ LL W E K AA+A P L
Sbjct: 158 QLSLPEGMGLIVRTAGLGRPKEELEWDLKILLRYW----EAVKQAAVAK------PGPYL 207
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + V+++++D + Y+ + P +R++LY + +PLF
Sbjct: 208 IHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRPQFVERLKLYREHLPLFS 267
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+F IE++I N + + LP+GGSL+I+ +EAL++ID+N G+S E+ L NL
Sbjct: 268 RFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT--RGASIEETALSTNLE 325
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA++IAR+LR+RDIGG+IV+DFIDM N+R V ++ A+ +DR+ +++ +SR GL+
Sbjct: 326 AAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQDRARIQIGRISRFGLL 385
Query: 592 EITRKR 597
E++R+R
Sbjct: 386 EMSRQR 391
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+ +D KL++L +E + ++Y G++T + P++G FVN G+
Sbjct: 4 MLINATQPDEVRVAITDDSKLIDLDIEIPGQEHKKSNIYKGIITSIEPSLGAVFVNYGSE 63
Query: 138 RPSLMDIKHY-REPFI 152
R + +K RE F+
Sbjct: 64 RHGFLPLKEISREYFL 79
>gi|296134025|ref|YP_003641272.1| ribonuclease, Rne/Rng family [Thermincola potens JR]
gi|296032603|gb|ADG83371.1| ribonuclease, Rne/Rng family [Thermincola potens JR]
Length = 564
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 202/347 (58%), Gaps = 19/347 (5%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E N F + VP T+ + K + H +++G +++VQ+ KE +GTKG
Sbjct: 63 EKNAFLFVEDAVP--PRTTTDEEAKSNYHVNITDV---LKEGQEILVQIAKEPIGTKGAR 117
Query: 313 LTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHS 371
+T + L R+ +L+ + D IG+SR+I ER RLK +A+ ++P GL +RT+A G
Sbjct: 118 VTTHITLPGRYLVLMPTVDYIGISRRIENESERERLKALAEKVKPANMGLIVRTIAEGMD 177
Query: 372 LEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKV 431
EEL +D+ L WK I + G VP L+H+ + I++D F E +
Sbjct: 178 EEELVQDVTVLTKLWKKIQ----------NRSCHGPVPNLIHKDLELVQRILRDIFTEDI 227
Query: 432 KKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPN 491
+++DS Y +V ++ P L RV LY++ LF+KF ++EEI +L RV L
Sbjct: 228 DNLIIDSRYEYEKVLELMELTTPQLKSRVSLYEQD-NLFEKFGVDEEIEKILKPRVWLKC 286
Query: 492 GGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVV 551
GG +VI+QTEAL +IDVN G + ++ +L NL AA +IAR+LRLR+IGGII+V
Sbjct: 287 GGYIVIDQTEALTAIDVNTGK--YVGSTNLADTVLKTNLDAAVEIARQLRLRNIGGIIIV 344
Query: 552 DFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRA 598
DFIDM D ++R+V +++++ V +D++ V L++ GL+E+TRK+
Sbjct: 345 DFIDMPDQEHQRMVLQKLEEEVRKDKTKTNVLGLTQLGLVEMTRKKV 391
>gi|346223797|ref|ZP_08844939.1| ribonuclease G [Anaerophaga thermohalophila DSM 12881]
Length = 519
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 218/389 (56%), Gaps = 17/389 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDS-HTSHPQGTK 277
V +++ +N + +D G + F +L+ + SK++ S H P+
Sbjct: 46 VKKIMPGLNAAFVDVGYEKDAFLHYLDLGPQFLSLNKYLKQSKAKKGSVSLHKFKPENDI 105
Query: 278 DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSR 337
+ T E + G +V+VQV KE + TKGP LT+ + R ILI DR+ VS+
Sbjct: 106 NKNGTISE----VLTGGQEVLVQVAKEPISTKGPRLTSEISIAGRNLILIPFSDRVSVSQ 161
Query: 338 KI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
KI + ER+RLK + +++P+ +G+ IRTVA G + EL K+L L+ W++ + +
Sbjct: 162 KIESPEERSRLKRLLLSIKPKNYGVIIRTVAEGKRVAELDKELRTLVKRWEDSIARVRDV 221
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
VP L+ +G+T +I++D N + ++ + EV Y++ IAP
Sbjct: 222 K----------VPGLVLGEIGRTSAILRDILNPSFHSVYINDIEIFREVREYVELIAPGR 271
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
V+LY PLFD+F IE++I + + V +G L+IE TEAL IDVN G+
Sbjct: 272 EKIVKLYKGNAPLFDQFGIEKQIKALFGRTVSFKSGAYLIIEHTEALHVIDVNSGNRS-R 330
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
S +E ++VNLAAA++IAR+LRLRD+GGIIVVDFIDM +++LV+E +K+A++ D
Sbjct: 331 SASDQESNAVEVNLAAAEEIARQLRLRDMGGIIVVDFIDMQLSEHRQLVFERMKEAMDAD 390
Query: 577 RSMVKVSELSRHGLMEITRKRAMMEQKAD 605
R+ + LS+ GLM+ITR+R E D
Sbjct: 391 RTKHNILPLSKFGLMQITRQRVRPEMHID 419
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED +LVEL EP +YLG V K++P + AFV++G + + + HY +
Sbjct: 16 IALLEDRRLVELRREPSNVKFAVGDIYLGKVKKIMPGLNAAFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDLVQ 203
+ P F K + + + ++ H +ND + T Q+ LVQ
Sbjct: 73 --LGPQFLSLNKYLKQSKAKKGSVSLHKFKPENDINKNGTISEVLTGGQEVLVQ 124
>gi|384428007|ref|YP_005637366.1| ribonuclease E [Xanthomonas campestris pv. raphani 756C]
gi|341937109|gb|AEL07248.1| ribonuclease E [Xanthomonas campestris pv. raphani 756C]
Length = 1189
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 214/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 23 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +V+VQV KE G KG LT + L R+ +L+
Sbjct: 75 FQA---GVDHNKSTIREL----LREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLMP 127
Query: 328 TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK + K P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 128 NSPSAGGVSRRIEGEDRAALKDALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 187
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY + +++VD+P Y +
Sbjct: 188 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQ 237
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++Q + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 238 EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 297
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 298 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVE 355
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 356 NKLQNALKYDRARVQLGRISRFGLMEMSRQR 386
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 1 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 61 RHGFLPLK 68
>gi|257055293|ref|YP_003133125.1| ribonuclease, Rne/Rng family [Saccharomonospora viridis DSM 43017]
gi|256585165|gb|ACU96298.1| ribonuclease, Rne/Rng family [Saccharomonospora viridis DSM 43017]
Length = 1093
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 185/304 (60%), Gaps = 6/304 (1%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT L RF + + S G+SRK+ ER RLK I K
Sbjct: 587 GDHVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPSGGATGISRKLPENERRRLKDILKR 646
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P G+ IRT + G S EEL +D+ L + W+ I E A++A+ + P LL+
Sbjct: 647 IVPSDAGVIIRTASEGISEEELARDVRRLKAQWEVIKEKAEAASAK-----KSGAPALLY 701
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + +++D F E KK+VV + + +Y++ +APDL DRVE Y +F +
Sbjct: 702 QEPDLLVKVIRDLFTEDFKKLVVQGDTAWETIRNYVEHVAPDLLDRVERYVGTGDVFADY 761
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I+E++ L ++V LP+GG LVI++TEA+ IDVN G G G + E+ + NL +A
Sbjct: 762 RIDEQLMKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTRNNLESA 820
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 821 EEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLSRDRTRHQVAEVTSLGLVQM 880
Query: 594 TRKR 597
TRKR
Sbjct: 881 TRKR 884
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVEL 101
L++ Q+ +D + ++S+ F++ + ++ +R I VLED LVE
Sbjct: 461 LEAKRQRRRDGREAGRRRAPILSEAEFLARRESVERTMVVAERGDSTQIGVLEDGVLVEH 520
Query: 102 LLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ S +VYLG V ++P+M AF++IG R +++
Sbjct: 521 FVTSSDSGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVL 561
>gi|119962820|ref|YP_948103.1| ribonuclease Rne/Rng family protein [Arthrobacter aurescens TC1]
gi|119949679|gb|ABM08590.1| putative ribonuclease, Rne/Rng family domain protein [Arthrobacter
aurescens TC1]
Length = 1109
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 185/307 (60%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER RLK I
Sbjct: 493 LKSGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDVERNRLKRI 552
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K PE G+ +RT A G S EEL D+ L + W+ I A S + A P
Sbjct: 553 LKDRLPENAGVIVRTAAEGASEEELTHDINRLRAQWEGIEGQASSTKVLA--------PE 604
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + +Y+ +APDL R+E + K +F
Sbjct: 605 LLYGEPDLTIKVVRDVFNEDFSKLIVSGDDAWDTIEAYVTYVAPDLVGRLEKWTKDQDIF 664
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I+ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 665 AAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNL 723
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA+++ R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 724 EAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMVECLGRDRTKHQVAEVTSLGL 783
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 784 VQMTRKR 790
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
+I++ F++ ++ + QR I VLED L E + + + +VYLG V
Sbjct: 390 VITEAEFLARRESVDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQ 449
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 450 NVLPSMEAAFVDIGRGRNAVL 470
>gi|392397233|ref|YP_006433834.1| ribonuclease, Rne/Rng family [Flexibacter litoralis DSM 6794]
gi|390528311|gb|AFM04041.1| ribonuclease, Rne/Rng family [Flexibacter litoralis DSM 6794]
Length = 521
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 142/408 (34%), Positives = 222/408 (54%), Gaps = 22/408 (5%)
Query: 200 DLVQFEHNDDEEHD---GDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGES 254
+LV+F H+D+ H GD + V ++ +N + ID G + F +L+ ++
Sbjct: 23 NLVEF-HHDEGNHQFSVGDMYLGTVRRIVPGMNAAFIDIGYEKDAFLHYLDLGPNVSSLI 81
Query: 255 NGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ---VQKGTKVIVQVVKEGLGTKGP 311
+S P ++ + + T P +K ++ V+VQVVKE + TKGP
Sbjct: 82 KYTKQVRSNNPKNAQQDY-KFTNFQLEKPIDKLGKMGDVLKPNQLVLVQVVKEPISTKGP 140
Query: 312 TLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGH 370
L+ L R+ +L+ +R+ +SRKIT ER RL+ + +++PEGFG+ +RTVA G
Sbjct: 141 RLSCQLSLAGRYLVLVPFDERVLISRKITNKTERRRLQRLIDSIKPEGFGVIVRTVAEGK 200
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ EL +D+ L W+ M + SA + V G + + S+++D NE
Sbjct: 201 DVAELDRDMSTLSDKWRGGMANLSSAK--PRDKVIGEI--------SKATSMLRDLLNES 250
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ VD T+ + Y+ IAPD V++Y+ R +F+ F IE ++ + K V LP
Sbjct: 251 FDSITVDDASTFDTIKEYIHKIAPDKERIVKMYNGRGKIFETFGIERQLKLLFGKTVSLP 310
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVIE TEAL +DVN G+ + +E L VNL A ++AR+L+LRD+GGIIV
Sbjct: 311 SGGYLVIEHTEALHVVDVNSGNKSSSE-NDQETTALKVNLEAGAEVARQLQLRDMGGIIV 369
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRA 598
+DFIDM N+R +YE +KK + DRS + LS+ GLM+ITR+R
Sbjct: 370 IDFIDMRKLENRRALYEHMKKVMHTDRSKFTILPLSKFGLMQITRQRV 417
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
RIA+L+D LVE + +YLG V ++VP M AF++IG + + + HY
Sbjct: 15 RIALLQDRNLVEFHHDEGNHQFSVGDMYLGTVRRIVPGMNAAFIDIGYEKDAFL---HY 70
>gi|410582605|ref|ZP_11319711.1| RNAse G [Thermaerobacter subterraneus DSM 13965]
gi|410505425|gb|EKP94934.1| RNAse G [Thermaerobacter subterraneus DSM 13965]
Length = 566
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 189/317 (59%), Gaps = 17/317 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKV 349
++ G ++IVQ+ KE GTKG +T + L R +L+ + +GVSR+I ER RLK
Sbjct: 99 LRPGQEIIVQITKEPTGTKGARVTRHLTLPGRLLVLMPGVNYVGVSRRIHDEKERQRLKQ 158
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+A+ LQP G GL +RT A G S EL+ D+ L W +I + A+ P
Sbjct: 159 LAQELQPAGAGLIVRTAAEGRSEAELRGDVAYLTRLWADIQQRARRQR----------AP 208
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-IP 468
+LL+R +G +V+D +V ++++D P Y V + A L DRV+LY R I
Sbjct: 209 VLLYRDLGLVFRVVRDMLTPEVDQVLIDDPGEYRRVLDLMAAFATPLRDRVQLYQNREIS 268
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF++F + EEI L +RV L +GG LVI+QTEAL +IDVN G F + +
Sbjct: 269 LFEQFGVNEEIERALKRRVWLKSGGYLVIDQTEALTAIDVNTGK--FVGSKNLADTVFRT 326
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AA +IAR+LRLRDIGGIIV+DFIDM + ++++ V +E+++ + RD + V ++
Sbjct: 327 NMEAAAEIARQLRLRDIGGIIVIDFIDMEEPAHRQRVVQELERHLARDHTKATVLGITAL 386
Query: 589 GLMEITRK---RAMMEQ 602
GL+E+TRK R+++EQ
Sbjct: 387 GLVEMTRKKGRRSLLEQ 403
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDI 144
R+AVLED +LVE+ E + ++Y G V ++P M AFVNIG R + + +
Sbjct: 15 RVAVLEDGRLVEIYHERPSTQRVAGNIYKGRVENVLPGMQAAFVNIGLERNAFLYV 70
>gi|298252878|ref|ZP_06976672.1| ribonuclease G/E [Gardnerella vaginalis 5-1]
gi|297533242|gb|EFH72126.1| ribonuclease G/E [Gardnerella vaginalis 5-1]
Length = 1077
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 584 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 643
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E ++KDL+ L+ W+ I AK +E + G
Sbjct: 644 AIVSKIAPKDMGVIIRTAADGASEESIEKDLDSLVKQWERI--EAKR-----EEYLHGKR 696
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + YL+ +APDL +VE +D
Sbjct: 697 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRIDEYLEMMAPDLRSKVEYWDPAEH 756
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 757 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 815
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 816 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 875
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 876 VTSLGLVQMTRKR 888
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
++LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 481 QNLLMEQDFLARRENVERLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYL 538
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G + ++P+M AFV+IG +R ++
Sbjct: 539 GRIQNVLPSMEAAFVDIGQARNGVL 563
>gi|421475427|ref|ZP_15923379.1| ribonuclease E/G family protein, partial [Burkholderia multivorans
CF2]
gi|400230207|gb|EJO60011.1| ribonuclease E/G family protein, partial [Burkholderia multivorans
CF2]
Length = 740
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 211/377 (55%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 37 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 81
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 82 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 141
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I ++A+ +
Sbjct: 142 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAI----EAASQSG 197
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ G P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 198 NPGQ----PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 253
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 254 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 311
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 312 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 371
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 372 QMGKISRFGLMELSRQR 388
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|161829769|ref|YP_001596416.1| ribonuclease [Coxiella burnetii RSA 331]
gi|161761636|gb|ABX77278.1| ribonuclease, Rne/Rng family [Coxiella burnetii RSA 331]
Length = 718
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 14/306 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +++VQV KE GTKG LT + L F +L+ + R G +SR+I G ER +L+
Sbjct: 98 GQELVVQVDKEERGTKGAALTTFISLAGSFLVLMPNNPRAGGISRRIEGDERDQLRETIN 157
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L PEG GL +RT G EEL+ DL+ LL W E K AA+A P L
Sbjct: 158 QLSLPEGMGLIVRTAGLGRPKEELEWDLKILLRYW----EAVKQAAVAK------PGPYL 207
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + V+++++D + Y+ + P +R++LY + +PLF
Sbjct: 208 IHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRPQFVERLKLYREHLPLFS 267
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+F IE++I N + + LP+GGSL+I+ +EAL++ID+N G+S E+ L NL
Sbjct: 268 RFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT--RGASIEETALSTNLE 325
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA++IAR+LR+RDIGG+IV+DFIDM N+R V ++ A+ +DR+ +++ +SR GL+
Sbjct: 326 AAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQDRARIQIGRISRFGLL 385
Query: 592 EITRKR 597
E++R+R
Sbjct: 386 EMSRQR 391
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+ +D KL++L +E + ++Y G++T + P++G FVN G+
Sbjct: 4 MLINATQPDEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSE 63
Query: 138 RPSLMDIKHY-REPFI 152
R + +K RE F+
Sbjct: 64 RHGFLPLKEISREYFL 79
>gi|372266754|ref|ZP_09502802.1| ribonuclease E [Alteromonas sp. S89]
Length = 1027
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 181/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER+ L+
Sbjct: 92 VKEGMEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERSDLRD 151
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++ P G G+ +RT G S EELQ DL LL W I + A E
Sbjct: 152 ALSSVDVPSGMGIIVRTAGVGRSGEELQWDLNYLLQLWTAIKKEAD----------ESKA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L + + ++DY + + +++VD Y + + + P+ ++V+ YD IP
Sbjct: 202 PHFLFQESNVIIRAIRDYMRDDIGEVIVDENGAYQLAAEFARQVMPNYANKVKFYDDNIP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ IE +I + V LP+GGS+VI+ TEAL+SID+N G E+ +
Sbjct: 262 LFNRYQIESQIETAFEREVKLPSGGSIVIDVTEALISIDINSSRAT--KGGDIEETARTI 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM S++R V + ++KA+ DR+ V+V +SR
Sbjct: 320 NLEAADEIARQLRLRDMGGLVVIDFIDMQSKSSQREVEKRMEKALGMDRARVQVGRISRF 379
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 380 GLLEMSRQR 388
>gi|257454041|ref|ZP_05619315.1| ribonuclease E [Enhydrobacter aerosaccus SK60]
gi|257448519|gb|EEV23488.1| ribonuclease E [Enhydrobacter aerosaccus SK60]
Length = 1266
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/344 (35%), Positives = 200/344 (58%), Gaps = 23/344 (6%)
Query: 256 GFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTA 315
GF P + E+ + P+ T + K +++G ++IVQV KE G KG L+
Sbjct: 66 GFLPIR-EIAPEYLAGDPRSTTNIKQL--------IKEGDELIVQVEKEERGNKGAALST 116
Query: 316 YPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLE 373
L R+ +L+ + R G +SR+I+G R +K L+ P+G + IRT G + +
Sbjct: 117 LISLAGRYLVLMPNNARGGGISRQISGKLRDEMKQALSELRLPKGMSVIIRTAGIGKTTD 176
Query: 374 ELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKK 433
ELQ+DL+ LL+ WK I + ++ + P LLH+ G V+DY + + +
Sbjct: 177 ELQQDLDHLLNIWKGIQQQSQ----------KFPSPRLLHQEAGVVTRAVRDYLRDDITE 226
Query: 434 MVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGG 493
+ VD+ Y+E ++++ + P +++ Y P+F +F IE++I + V LP+GG
Sbjct: 227 IWVDNEYAYNEAANFIEAVMPQQANKLRKYTDYEPMFARFGIEKQIETAYQREVRLPSGG 286
Query: 494 SLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDF 553
S+VI+QTEALVSID+N G S + + NL AA +IAR+LRLRD+GG+IV+DF
Sbjct: 287 SIVIDQTEALVSIDINSSKATKGADVS--ETAFNTNLEAADEIARQLRLRDMGGLIVIDF 344
Query: 554 IDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
IDMA D +++ V +K+A + DR+ ++ +E+SR GL+E++R+R
Sbjct: 345 IDMATDDHQKQVENRLKEATKNDRARIQFAEISRFGLLEMSRQR 388
>gi|344344882|ref|ZP_08775741.1| ribonuclease, Rne/Rng family [Marichromatium purpuratum 984]
gi|343803576|gb|EGV21483.1| ribonuclease, Rne/Rng family [Marichromatium purpuratum 984]
Length = 1008
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 184/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +V+VQ+ KE G KG LT + L R+ +L+ + R G VSR+I G +R+ L+
Sbjct: 95 VREGREVVVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGQDRSELRD 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ PE GL +RT G S+EELQ DL+ LL WK I G +
Sbjct: 155 AMSQLEIPEDMGLIVRTAGVGKSVEELQWDLDYLLQLWKAI----------ETSGEQRKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DY + ++V+D P Y ++++ + P ++ YD +P
Sbjct: 205 PFLIYQESDVIIRSIRDYLRADIGEIVIDDPAVYERAETFIRQVMPQNIKKLRRYDDEVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + + V LP+GGS+VI+ EAL +ID+N G+ E+ L+
Sbjct: 265 LFTRYQIETQIESAFQREVRLPSGGSIVIDHGEALTAIDINSARAT--KGADIEETALNT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+ V+DFIDM N+R V +++A+++DR+ V+V+ +SR
Sbjct: 323 NLEAADEIARQLRLRDLGGLFVIDFIDMTPPKNQREVENRLREALKQDRARVQVARISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
>gi|319949123|ref|ZP_08023215.1| ribonuclease, Rne/Rng family [Dietzia cinnamea P4]
gi|319437195|gb|EFV92223.1| ribonuclease, Rne/Rng family [Dietzia cinnamea P4]
Length = 1044
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 190/308 (61%), Gaps = 7/308 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG L+ L RF + + + G+SRK+ ER RLK I
Sbjct: 585 LKSGDMVLVQVTKDPVGQKGARLSTQISLAGRFLVYVPDGNSTGISRKLPDTERRRLKGI 644
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PEG G+ IRT A G S EE+ +D+E L + W I E +AA + G P+
Sbjct: 645 LKEVVPEGSGVIIRTAAEGVSAEEIGRDVERLAAQWTEISE---AAAKRTESG--SGTPV 699
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDK-RIPL 469
L+ + +V+D FNE K+V+ +++ V Y+ +AP++ DR+E +D + +
Sbjct: 700 ALYEEPDLLVKVVRDLFNEDFSKLVIQGETSWNTVHGYVSRVAPEMVDRLERHDNPDVDV 759
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F ++E++ L ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + N
Sbjct: 760 FATHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-YTGSGGNLEETVTKNN 818
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GG++++DFIDM ++N+ LV + +A+ RDR+ +VSE++ G
Sbjct: 819 LEAAEEIVRQLRLRDVGGMVIIDFIDMVLEANRDLVLRRLTEALGRDRTRHQVSEVTSLG 878
Query: 590 LMEITRKR 597
L+++TRK+
Sbjct: 879 LVQLTRKK 886
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
M ++ VLED+ LVE + + +VYLG V ++P+M AFV+IG R ++
Sbjct: 507 MTQVGVLEDKVLVEHFVTTESARSMVGNVYLGRVQNVLPSMEAAFVDIGRGRNGVL 562
>gi|423350548|ref|ZP_17328201.1| rne/Rng family ribonuclease, partial [Turicella otitidis ATCC
51513]
gi|404387447|gb|EJZ82565.1| rne/Rng family ribonuclease, partial [Turicella otitidis ATCC
51513]
Length = 954
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 184/310 (59%), Gaps = 10/310 (3%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIA 351
+ G + +VQV K G KG LT + L RF + GVS K+ ER RLK +
Sbjct: 570 KNGDQALVQVTKNPSGHKGARLTGHVSLAGRFLVYTPGGSTAGVSHKLPAGERNRLKKVV 629
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
K L PEG G +RT A G +E+ D++ + W +I AK + +GA P+
Sbjct: 630 KGLVPEGDGAIVRTAAEGVDEQEIGADIQRITRLWDDIERRAKK-----ERSSKGAKPVA 684
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI---- 467
L+ + +V+D FNE V ++VVD R+++ V +Y+Q +A L DR+E YD+
Sbjct: 685 LYEEPDLLVKVVRDLFNESVDRLVVDGRRSWNTVNAYVQSVAGSLSDRLERYDRGAHGGR 744
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
F++ NI+E+I L + V LP+GGSLVI++TEA+ IDVN G G G + E+ +
Sbjct: 745 DAFEELNIDEQIEEALQRVVYLPSGGSLVIDRTEAMTVIDVNTGR-FTGSGGNLEETVTR 803
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
NL AA++I R+LRLRD+GG++V+DFIDM + N+ LV + + +E DR+ +VSE++
Sbjct: 804 NNLEAAEEIVRQLRLRDVGGMVVIDFIDMVLEENQDLVLRRLNEELELDRTRHQVSEVTS 863
Query: 588 HGLMEITRKR 597
GL+++TRK+
Sbjct: 864 LGLVQLTRKK 873
>gi|170700218|ref|ZP_02891234.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10]
gi|170134851|gb|EDT03163.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10]
Length = 1051
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGIDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|283783663|ref|YP_003374417.1| S1 RNA binding domain-containing protein [Gardnerella vaginalis
409-05]
gi|283441778|gb|ADB14244.1| S1 RNA binding domain protein [Gardnerella vaginalis 409-05]
Length = 1093
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 606 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 665
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E ++KDL+ L+ W+ I AK +E + G
Sbjct: 666 AIVSKIAPKDMGVIIRTAADGASEESIEKDLDSLVKQWERI--EAKR-----EEYLHGKR 718
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + YL+ +APDL +VE +D
Sbjct: 719 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRIDEYLEMMAPDLRSKVEYWDPAEH 778
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 779 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 837
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 838 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 897
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 898 VTSLGLVQMTRKR 910
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
++LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 503 QNLLMEQDFLARRENVERLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYL 560
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G + ++P+M AFV+IG +R ++
Sbjct: 561 GRIQNVLPSMEAAFVDIGQARNGVL 585
>gi|445498793|ref|ZP_21465648.1| ribonuclease E [Janthinobacterium sp. HH01]
gi|444788788|gb|ELX10336.1| ribonuclease E [Janthinobacterium sp. HH01]
Length = 1012
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 184/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQV KE G KG LT++ L R+ +L+ + R G VSR++ G ER L+
Sbjct: 93 LREGQEIMVQVEKEERGNKGAALTSFVSLAGRYLVLMPNNPRGGGVSRRVEGEERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G + RT G +++ELQ DL L+ W+ I KSA+ A
Sbjct: 153 TMDKLDLPPGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGKSASGA--------- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ Y + ++ + PD+ RV+ Y +P
Sbjct: 204 -FLIYQESSLVIRAIRDYFQPDIGEILIDTDDIYEQAHQFMSHVMPDMVHRVKRYSDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALVS+DVN GS E +
Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARAT--RGSDIETTAFNT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA+++AR+LRLRD+GG+IV+DFIDM N+R V + +K A+ DR+ V++ ++SR
Sbjct: 321 NCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQRLKDALHHDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSYGED 63
Query: 138 RPSLMDIK-----HYRE 149
R + K ++RE
Sbjct: 64 RHGFLPFKEVARTYFRE 80
>gi|188991779|ref|YP_001903789.1| ribonuclease E [Xanthomonas campestris pv. campestris str. B100]
gi|167733539|emb|CAP51743.1| ribonuclease E [Xanthomonas campestris pv. campestris]
Length = 1194
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 214/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +V+VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIREL----LREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK + K P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKDALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY + +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++Q + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQR 389
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|452745983|ref|ZP_21945815.1| ribonuclease E [Mannheimia haemolytica serotype 6 str. H23]
gi|452086122|gb|EME02513.1| ribonuclease E [Mannheimia haemolytica serotype 6 str. H23]
Length = 980
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 207/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPSDYVFNGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------IQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 142 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ ++ + +SR GL+E++R+R
Sbjct: 370 RARIQFARISRFGLLEMSRQR 390
>gi|375336866|ref|ZP_09778210.1| ribonuclease E [Succinivibrionaceae bacterium WG-1]
Length = 823
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQ+ KE G KG LT Y L + +L+ + R G +S +I G ER+ LK
Sbjct: 25 IKEGQEVIVQIEKEERGLKGAALTTYISLAGSYIVLMPNNPRAGGISHRIEGEERSELKQ 84
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++ P+G G+ +RT G S EEL DL+ L+ W +I E A A+ +G
Sbjct: 85 ELDGVKVPDGMGIIVRTAGVGRSSEELNWDLDILVKHWNSIKE-----AAASRKG----- 134
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ L ++DY + ++++D Y +V + I PD ++V+L+D P
Sbjct: 135 PFLIHQESNIVLRAIRDYLRPDISEIIIDKKEVYDQVVKQISMIRPDFVNKVKLFDGDAP 194
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SIDVN G E+ L
Sbjct: 195 LFSHFQIESQIESAYHREVKLPSGGSIVIDPTEALTSIDVNSAKAT--KGDDIEETALQT 252
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AA++IAR+LRLRDIGG+IV+DFIDM N+R + ++++AV++DR+ ++ + +SR
Sbjct: 253 NIEAAEEIARQLRLRDIGGLIVIDFIDMTPIKNQREIENKMREAVKQDRARLQFARISRF 312
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 313 GLLEMSRQR 321
>gi|261493498|ref|ZP_05990020.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261495851|ref|ZP_05992283.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261308478|gb|EEY09749.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261310831|gb|EEY12012.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 980
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 207/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPSDYVFNGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------IQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 142 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ ++ + +SR GL+E++R+R
Sbjct: 370 RARIQFARISRFGLLEMSRQR 390
>gi|126662499|ref|ZP_01733498.1| Ribonuclease G [Flavobacteria bacterium BAL38]
gi|126625878|gb|EAZ96567.1| Ribonuclease G [Flavobacteria bacterium BAL38]
Length = 538
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 193/319 (60%), Gaps = 18/319 (5%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQ 355
V+VQVVKE + TKGP +++ L R+ +L+ DR+ VS+KI + E+ RLK + ++++
Sbjct: 145 VLVQVVKEPISTKGPRISSEISLAGRYVVLVPFSDRVSVSQKIESREEKDRLKRLVQSIK 204
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFG+ +RTVA G + EL KDL+ LL W + ++A P +
Sbjct: 205 PKGFGVIVRTVAEGKKVAELDKDLQTLLDRWSAMSRRLQTAHH----------PSKVLGE 254
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD-KRIPLFDKFN 474
+ + SI++D FN+ + VD Y E YLQ+IAPD V+ Y K +PLF+K+N
Sbjct: 255 LNKASSILRDVFNDTFTGIYVDDEDLYLETKEYLQEIAPDKVSIVKHYQSKDLPLFEKYN 314
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I K V + G L+IE TEAL IDVN G+ +S+E L+VN+ AA
Sbjct: 315 IERQIKTSFGKTVSMSKGAYLIIEHTEALHVIDVNSGNRS-SKATSQEGTALEVNMIAAA 373
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GGIIVVDFIDM + N++++Y+ +++ + D++ K+ S+ GL++IT
Sbjct: 374 EIARQLRLRDMGGIIVVDFIDMQNPENRKVLYDFLREEMSDDKAKHKILPPSKFGLIQIT 433
Query: 595 RKRAMME-----QKADPEN 608
R+R E ++ DP N
Sbjct: 434 RQRVRPEVNIKTREEDPNN 452
>gi|305681139|ref|ZP_07403946.1| S1 RNA binding domain protein [Corynebacterium matruchotii ATCC
14266]
gi|305659344|gb|EFM48844.1| S1 RNA binding domain protein [Corynebacterium matruchotii ATCC
14266]
Length = 929
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 185/311 (59%), Gaps = 10/311 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KGP LT L R+ + + G+SRK+ ER RLK I
Sbjct: 383 LKSGDQVLVQVAKDPIGQKGPRLTTQISLAGRYLVYVPGGKSAGISRKLPAPERKRLKAI 442
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P + IRT A G + + D+ L S W+ I E ++ +G P+
Sbjct: 443 LKNVVPADGSVIIRTAAEGVPEDAIAADVNRLHSLWEQIQERT-----LKEKESKGTKPV 497
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI--- 467
++ + +V+D FNE +VVD R ++ V +Y+Q +APDL DR+E +D+
Sbjct: 498 TMYEEPNMLVKVVRDLFNEDFTSLVVDGNRAWNTVHAYIQSVAPDLLDRLEKFDREAHDG 557
Query: 468 -PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
F+ ++E++ LS++V LP+GG+LVI++TEA+ IDVN G G G + E+ +
Sbjct: 558 QDAFEALRVDEQLKKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVT 616
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRD+GG+IVVDFIDM N+ LV + +A+ RDR+ ++SE++
Sbjct: 617 KNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRLTEALGRDRTRHQISEVT 676
Query: 587 RHGLMEITRKR 597
GL++ITRKR
Sbjct: 677 SLGLVQITRKR 687
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 63 EKGSLISKDNFVSTVILINSSICTMQR-----------IAVLEDEKLVELLLEPVKSNVQ 111
+K ++S+ F++ +N ++ +R + VLED+ LVE + +
Sbjct: 270 KKRHIVSEAEFLARRESVNRTMVVRERQRHDHPGIVTQVGVLEDDMLVEHFVTSDTQSSL 329
Query: 112 CDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
++YLG V ++P M AF++IG R ++
Sbjct: 330 AGNIYLGRVQNVLPAMEAAFIDIGKGRNGVL 360
>gi|90415858|ref|ZP_01223791.1| ribonuclease E [gamma proteobacterium HTCC2207]
gi|90332232|gb|EAS47429.1| ribonuclease E [gamma proteobacterium HTCC2207]
Length = 1008
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 185/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++ VQV KE G+KG LT + L R+ +L+ + R G +SR+I G ER L+
Sbjct: 94 IREGQEIFVQVEKEERGSKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERADLRE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L PEG G +RT G + EELQ DL+ LL W I A+ A
Sbjct: 154 AMRGLDIPEGMGAIVRTAGIGRATEELQWDLDYLLQLWNTIEAEAEGAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L + + ++DY + V +++VDS Y+ +++ + PD ++V+ Y ++IP
Sbjct: 204 PHFLFQESNVIVRAIRDYLRQDVGEVIVDSQDAYNLAAAFIGTVMPDFTNKVKFYQEQIP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ IE +I + V LP+GGS+VI+ TEA+VSID+N G E+ +
Sbjct: 264 LFNRYQIENQIETAFRREVSLPSGGSIVIDITEAMVSIDINSARAT--KGGDIEETAFNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA+++AR+LRLRD+GG+IV+DFIDM + +++ V +++A++ DR+ V+V +SR
Sbjct: 322 NKEAAEEVARQLRLRDVGGLIVIDFIDMLNTRHQKEVENTIREALKIDRARVQVGRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN+S R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINASHTEEVRVAMVDGQKLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDYGAD 63
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 64 RHGFLPLKEISREYF 78
>gi|83719665|ref|YP_442242.1| ribonuclease E [Burkholderia thailandensis E264]
gi|257138435|ref|ZP_05586697.1| ribonuclease E [Burkholderia thailandensis E264]
gi|83653490|gb|ABC37553.1| ribonuclease E [Burkholderia thailandensis E264]
Length = 1068
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 184/309 (59%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 90 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 150 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGHPGQ 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 202 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKVKRYHDDVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 262 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 320 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMELSRQR 388
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|254362479|ref|ZP_04978587.1| ribonuclease E [Mannheimia haemolytica PHL213]
gi|153094071|gb|EDN74983.1| ribonuclease E [Mannheimia haemolytica PHL213]
Length = 977
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 207/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 37 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPSDYVFNGRPNIKD 89
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 90 I-----------IQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 138
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 139 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 198
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 199 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDF 248
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 249 INRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 306
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 307 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 366
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ ++ + +SR GL+E++R+R
Sbjct: 367 RARIQFARISRFGLLEMSRQR 387
>gi|385802143|ref|YP_005838546.1| ribonuclease E/G family protein [Gardnerella vaginalis HMP9231]
gi|333393472|gb|AEF31390.1| ribonuclease E/G family protein [Gardnerella vaginalis HMP9231]
Length = 1135
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 192/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 642 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 701
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I AK +E + G
Sbjct: 702 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 754
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +A DL ++E +D
Sbjct: 755 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMALDLRSKIEYWDPAEH 814
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 815 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 873
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 874 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 933
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 934 VTSLGLVQMTRKR 946
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 541 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 598
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 599 VQNVLPSMEAAFVDIGQARNGVL 621
>gi|409391144|ref|ZP_11242836.1| putative ribonuclease [Gordonia rubripertincta NBRC 101908]
gi|403198957|dbj|GAB86070.1| putative ribonuclease [Gordonia rubripertincta NBRC 101908]
Length = 1154
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 186/311 (59%), Gaps = 10/311 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT L R+ + + G+SRK+ VER RLK I
Sbjct: 604 LKPGDHVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRKLPDVERKRLKQI 663
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L PE G+ IRT + G S EEL D+ L + WK+I E +SA + P
Sbjct: 664 LSKLVPEDAGVIIRTASEGVSAEELGADITRLEAKWKSIEESVESAKKSGS-----GAPT 718
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDK-RIPL 469
L+ + +V+D FNE KK+VV+ + ++ V Y+ +APDL +RVE + K
Sbjct: 719 ALYEEPDLLVRVVRDLFNEDFKKLVVEGDKAWNLVEGYVSSVAPDLMERVEKFSKPHADA 778
Query: 470 FDKF---NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
D F I+E++ L ++V LP+GG+L+IE TEA+ +DVN G G G + E+ +
Sbjct: 779 PDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGK-FTGSGGNLEETVT 837
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRDIGG+I+VDFIDM +SN+ LV + +A+ RDR+ +VSE++
Sbjct: 838 RNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVT 897
Query: 587 RHGLMEITRKR 597
GL+++TRKR
Sbjct: 898 SLGLVQMTRKR 908
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 81 NSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSR 138
++++ ++AVLED LVE + S+ ++YLG V ++P M AFV+IG R
Sbjct: 520 HAAVEDYTQVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGR 577
>gi|118581418|ref|YP_902668.1| ribonuclease [Pelobacter propionicus DSM 2379]
gi|118504128|gb|ABL00611.1| RNAse E [Pelobacter propionicus DSM 2379]
Length = 866
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/385 (33%), Positives = 216/385 (56%), Gaps = 41/385 (10%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V V + + +D G P+ F G+ H D F+ + +VP++ P
Sbjct: 51 VLRVEPGLQAAFVDIGRPKPGFLQM--GELHPD-----FWQWRDDVPEEQRKRRP----- 98
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRK 338
+ +++G +++VQV K+ KG LT+Y L R+ +L+ D G+SRK
Sbjct: 99 -------RIQEVLRRGQELVVQVEKDERDNKGSALTSYLSLPGRYMVLMPGSDSSGISRK 151
Query: 339 IT--GVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+ V + +++A PEG G +RT A G + EELQKD+E LL+ ++ I + A
Sbjct: 152 VEQESVRKQLKEIMAGMSIPEGIGYIVRTQAVGRTPEELQKDMENLLAMYEGIKKSATEI 211
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
A + ++R G + ++DYF++ + ++VVDS ++E + ++ P
Sbjct: 212 KGAGE----------IYRDKGLIIRFIRDYFSDDIDEVVVDSKEAFNEARDFFRETMPGC 261
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
V+L+ ++ P+F +F IEE+I+ + KRV LP+GGSL+IE TEALVSIDVN G
Sbjct: 262 EKLVKLHKEKRPVFSRFQIEEQIDQIYEKRVSLPSGGSLIIEPTEALVSIDVNSGK---- 317
Query: 517 HGSSKEKAILD----VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKA 572
SS E+ I D N+ AA+++AR+LRLRD+GG+I++DFIDM D + V + +K+A
Sbjct: 318 --SSGERGIEDTAFKTNMEAAEEVARQLRLRDLGGLIMIDFIDMRDRKHNHEVEKTLKQA 375
Query: 573 VERDRSMVKVSELSRHGLMEITRKR 597
++ D++ V + +S G++E++R+R
Sbjct: 376 LKMDKARVNLGRISEFGILEMSRQR 400
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
VS +LIN R+A++ D +L+EL +E ++Y GVV ++ P + AFV+
Sbjct: 5 VSKKMLINVMHPEEARVAIVHDGRLMELNIEISGKEQTKGNIYKGVVLRVEPGLQAAFVD 64
Query: 134 IGNSRPSLMDI 144
IG +P + +
Sbjct: 65 IGRPKPGFLQM 75
>gi|325921640|ref|ZP_08183477.1| RNAse E [Xanthomonas gardneri ATCC 19865]
gi|325547874|gb|EGD18891.1| RNAse E [Xanthomonas gardneri ATCC 19865]
Length = 1243
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 213/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 23 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 75 FQA---GVDHNKSTIREL----LREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLMP 127
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 128 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 187
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY + +++VD+P Y +
Sbjct: 188 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQ 237
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++Q + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 238 EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 297
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 298 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVE 355
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 356 NKLQNALKYDRARVQLGRISRFGLMEMSRQR 386
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 1 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 61 RHGFLPLK 68
>gi|227548738|ref|ZP_03978787.1| ribonuclease E, partial [Corynebacterium lipophiloflavum DSM 44291]
gi|227079205|gb|EEI17168.1| ribonuclease E [Corynebacterium lipophiloflavum DSM 44291]
Length = 743
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 187/311 (60%), Gaps = 10/311 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KG LT L R+ + + G+SRK+ ER RLK I
Sbjct: 329 LKSGDQVMVQVTKDPVGHKGARLTTQISLAGRYLVYVPGGRSAGISRKLPAPERKRLKEI 388
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ P G IRT A G S E + D+ L + W+ + E A+ ++ +GA P+
Sbjct: 389 LAKVVPGKGGAIIRTAAEGVSEEAIAADVTRLHNQWETLQEQAER-----EKSSKGAKPV 443
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI--- 467
L+ + +V+D FNE K++VD R ++ V +Y+ +APDL DR+ YD+
Sbjct: 444 TLYEEPNLLVKVVRDLFNEDFSKLIVDGKRPWNTVHAYVSSVAPDLEDRLVRYDRAAHDG 503
Query: 468 -PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
F+ + ++E+I LS+ V LP+GG+LVI++TEA+ IDVN G G G S E+ +
Sbjct: 504 QDAFEAYRVDEQIQKALSRTVWLPSGGTLVIDRTEAMTVIDVNTGK-FTGSGGSLEETVT 562
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRDIGG+I+VDFIDM N+ LV +K+A+ RDR+ +VSE++
Sbjct: 563 RNNLEAAEEIVRQMRLRDIGGMIIVDFIDMILPENQELVLRRLKEALGRDRTRHQVSEVT 622
Query: 587 RHGLMEITRKR 597
GL+++TRKR
Sbjct: 623 SLGLVQMTRKR 633
>gi|219871374|ref|YP_002475749.1| ribonuclease E [Haemophilus parasuis SH0165]
gi|219691578|gb|ACL32801.1| ribonuclease E [Haemophilus parasuis SH0165]
Length = 969
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S PQG +
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPQGYV-FQGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IQEGAEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 146 DERLDLKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNRKVFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRAT--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKR 597
+ +SR GL+E++R+R
Sbjct: 374 QFGRISRFGLLEMSRQR 390
>gi|225021682|ref|ZP_03710874.1| hypothetical protein CORMATOL_01710 [Corynebacterium matruchotii
ATCC 33806]
gi|224945673|gb|EEG26882.1| hypothetical protein CORMATOL_01710 [Corynebacterium matruchotii
ATCC 33806]
Length = 953
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 185/311 (59%), Gaps = 10/311 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KGP LT L R+ + + G+SRK+ ER RLK I
Sbjct: 407 LKSGDQVLVQVAKDPIGQKGPRLTTQISLAGRYLVYVPGGKSAGISRKLPAPERKRLKAI 466
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P + IRT A G + + D+ L S W+ I E ++ +G P+
Sbjct: 467 LKNVVPADGSVIIRTAAEGVPEDAIAADVNRLHSLWEQIQERT-----LKEKESKGTKPV 521
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI--- 467
++ + +V+D FNE +VVD R ++ V +Y+Q +APDL DR+E +D+
Sbjct: 522 TMYEEPNMLVKVVRDLFNEDFTSLVVDGNRAWNTVHAYIQSVAPDLLDRLEKFDREAHGG 581
Query: 468 -PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
F+ ++E++ LS++V LP+GG+LVI++TEA+ IDVN G G G + E+ +
Sbjct: 582 QDAFEALRVDEQLKKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVT 640
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRD+GG+IVVDFIDM N+ LV + +A+ RDR+ ++SE++
Sbjct: 641 KNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRLTEALGRDRTRHQISEVT 700
Query: 587 RHGLMEITRKR 597
GL++ITRKR
Sbjct: 701 SLGLVQITRKR 711
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 63 EKGSLISKDNFVSTVILINSSICTMQR-----------IAVLEDEKLVELLLEPVKSNVQ 111
+K ++S+ F++ +N ++ +R + VLED+ LVE + +
Sbjct: 294 KKRHIVSEAEFLARRESVNRTMVVRERQRHDHPGIVTQVGVLEDDMLVEHFVTSDTQSSL 353
Query: 112 CDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
++YLG V ++P M AF++IG R ++
Sbjct: 354 AGNIYLGRVQNVLPAMEAAFIDIGKGRNGVL 384
>gi|163841977|ref|YP_001626382.1| ribonuclease E [Renibacterium salmoninarum ATCC 33209]
gi|162955453|gb|ABY24968.1| ribonuclease E [Renibacterium salmoninarum ATCC 33209]
Length = 971
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 182/307 (59%), Gaps = 9/307 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER RLK I
Sbjct: 432 LKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGGSMTGISRKLPDVERNRLKRI 491
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K PE G+ +RT A G S EEL D+ L W+ I A S A P
Sbjct: 492 LKDNLPENAGVIVRTAAEGASEEELTHDINRLRVQWEGIESQASSTKTLA--------PE 543
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
+L+ T+ +V+D FNE K++V + V +Y+ +APDL DR+E + +F
Sbjct: 544 MLYGEPHLTIKVVRDVFNEDFAKLIVSGEEAWDTVEAYVTYVAPDLVDRLEKWTSNEDIF 603
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
I+E+I+ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 604 AAHRIDEQISKALERKVFLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNL 662
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA+++ R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 663 EAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGL 722
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 723 IQMTRKR 729
>gi|416953034|ref|ZP_11935600.1| ribonuclease E, partial [Burkholderia sp. TJI49]
gi|325522996|gb|EGD01422.1| ribonuclease E [Burkholderia sp. TJI49]
Length = 586
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F ++ E H GF P K EV Q K+
Sbjct: 40 NIYKGVITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKEGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 197 SQNGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|167855429|ref|ZP_02478194.1| ribonuclease E [Haemophilus parasuis 29755]
gi|167853423|gb|EDS24672.1| ribonuclease E [Haemophilus parasuis 29755]
Length = 985
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S PQG +
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPQGYV-FQGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IQEGAEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 146 DERLDLKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNRKVFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRAT--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKR 597
+ +SR GL+E++R+R
Sbjct: 374 QFGRISRFGLLEMSRQR 390
>gi|402575152|ref|YP_006608044.1| ribonuclease, Rne/Rng family [Candidatus Portiera aleyrodidarum
BT-B-HRs]
gi|407453166|ref|YP_006732485.1| Ribonuclease E [Candidatus Portiera aleyrodidarum BT-QVLC]
gi|407681508|ref|YP_006796684.1| Ribonuclease E [Candidatus Portiera aleyrodidarum BT-QVLC]
gi|407681789|ref|YP_006796964.1| Ribonuclease E [Candidatus Portiera aleyrodidarum BT-B-HRs]
gi|401871956|gb|AFQ24124.1| ribonuclease, Rne/Rng family [Candidatus Portiera aleyrodidarum
BT-B-HRs]
gi|405779883|gb|AFS18886.1| Ribonuclease E [Candidatus Portiera aleyrodidarum BT-QVLC]
gi|407243119|gb|AFT80520.1| Ribonuclease E [Candidatus Portiera aleyrodidarum BT-QVLC]
gi|407243400|gb|AFT80800.1| Ribonuclease E [Candidatus Portiera aleyrodidarum BT-B-HRs]
Length = 544
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 200/367 (54%), Gaps = 40/367 (10%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F DF H GF P SK + +D +++ + K+
Sbjct: 54 EAVFVDFGAKRH-------GFLPIKEISKEYLLNDCNSNIREIIKE-------------- 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VI 350
G ++IVQV KE KG LT Y L RF +L+ + R G +SR+ITG +R +LK I
Sbjct: 93 -GQELIVQVEKEERSNKGAALTTYISLAGRFLVLMPNNYRSGGISRRITGTDRFKLKEAI 151
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K P+ G+ +RT G S ++LQ DL L+ W+ I E A + + P
Sbjct: 152 KKLFIPKNMGIIVRTAGIGRSSKDLQCDLNYLIQIWEAITEEAN----------KRSAPF 201
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L++R + ++DY + + ++++DS Y++ ++++ + P +++LY +PLF
Sbjct: 202 LIYRESNVIIRAMRDYLRQDIGEVLIDSVYIYNDALNFIKQVMPTYQKKIKLYKDELPLF 261
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
KF IE +I + V LP+GGS+ I+ TEALVS+D+N G E+ L NL
Sbjct: 262 TKFKIESQIATAYQREVKLPSGGSIFIDSTEALVSVDINSARAT--RGDDIEETALHTNL 319
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +I R+LRLRDIGG++V+DFIDMA N+R V ++ A + DR+ +++ +SR GL
Sbjct: 320 EAADEIGRQLRLRDIGGLVVIDFIDMALTRNQREVENRIRTAFKVDRARIQLCRISRFGL 379
Query: 591 MEITRKR 597
ME++R+R
Sbjct: 380 MEMSRQR 386
>gi|186475583|ref|YP_001857053.1| ribonuclease [Burkholderia phymatum STM815]
gi|184192042|gb|ACC70007.1| ribonuclease, Rne/Rng family [Burkholderia phymatum STM815]
Length = 1092
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 188/309 (60%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 93 LKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ PEG + RT G S EELQ DL L+ W+ I ++S G +G
Sbjct: 153 TMSQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS-------GTQGQ- 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD ++V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVNKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 383 GLMELSRQR 391
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G+VT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK-----HYRE 149
R + K ++RE
Sbjct: 64 RHGFLPFKEVARQYFRE 80
>gi|323526883|ref|YP_004229036.1| Rne/Rng family ribonuclease [Burkholderia sp. CCGE1001]
gi|323383885|gb|ADX55976.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1001]
Length = 1080
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I AA
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGSAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVGKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|86739925|ref|YP_480325.1| ribonuclease [Frankia sp. CcI3]
gi|86566787|gb|ABD10596.1| ribonuclease, Rne/Rng family [Frankia sp. CcI3]
Length = 1194
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 189/319 (59%), Gaps = 14/319 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 640 LKSGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVFVPDGQNAGISRKLPDTERARLKSI 699
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EL++D+E L + W++I AK A + P
Sbjct: 700 LKKITPEDGGVIVRTAAEGASEAELERDIERLAAQWEDIERKAKKA----------SAPS 749
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +++D FNE ++VV + Y+ +APDL R+ Y +F
Sbjct: 750 LLYGEPDLVVRVIRDIFNEDFTELVVQGSGEAITIEEYIDTVAPDLRSRIRRYTGTGDVF 809
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ ++E++ L ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL
Sbjct: 810 AEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FTGKGGNLEETVTKNNL 868
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 869 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 928
Query: 591 MEITRKR---AMMEQKADP 606
+++TRKR ++E ++P
Sbjct: 929 VQMTRKRVGQGLLEAYSEP 947
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED LVE + S+ +VYLG V ++ +M AFV+IG R +++
Sbjct: 564 QIAVLEDGVLVEHFVTRASSSSYAGNVYLGRVQNVLASMEAAFVDIGKGRNAVL 617
>gi|336177537|ref|YP_004582912.1| ribonuclease, Rne/Rng family [Frankia symbiont of Datisca
glomerata]
gi|334858517|gb|AEH08991.1| ribonuclease, Rne/Rng family [Frankia symbiont of Datisca
glomerata]
Length = 909
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 188/319 (58%), Gaps = 14/319 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G ++VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 414 LKSGQSIVVQVSKDPIGHKGARLTSQVSLPGRYLVYVPDGQNAGISRKLPDTERARLKAI 473
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL +D+ L + W++I A A P
Sbjct: 474 LKKITPEDGGVIVRTAAEGASEQELARDVARLSAQWEDICRKATKAT----------APA 523
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +++D FNE ++VV + Y+ +APDL DRV + +F
Sbjct: 524 LLYGEPDLVIRVIRDIFNEDFAELVVQGAGEATMIEDYVDMVAPDLRDRVRRQAGPVDVF 583
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
D++ ++E++ L ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL
Sbjct: 584 DEYRVDEQLAKALERKVWLPSGGSLVIDRTEAMTVIDVNTGK-FTGKGGNLEETVTKNNL 642
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 643 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 702
Query: 591 MEITRKR---AMMEQKADP 606
+++TRKR ++E ++P
Sbjct: 703 VQMTRKRVGQGLLEAYSEP 721
>gi|255325498|ref|ZP_05366600.1| ribonuclease E [Corynebacterium tuberculostearicum SK141]
gi|255297436|gb|EET76751.1| ribonuclease E [Corynebacterium tuberculostearicum SK141]
Length = 1290
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 191/321 (59%), Gaps = 10/321 (3%)
Query: 281 HTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKIT 340
H K ++ G +V+VQV K+ +G KG LT L R+ + + G+SRK+
Sbjct: 490 HGRARKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPGGRSAGISRKLP 549
Query: 341 GVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER RLK I + P G IRT A E + D+ L S W++I+ HAK
Sbjct: 550 APERKRLKDILGRVVPGDGGAIIRTAAENVPEEAIATDVNRLHSRWEDIVAHAKK----- 604
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
++ +GA P+ ++ + +V+D FNE +++VD R+++ V +Y+ +APDL DRV
Sbjct: 605 EKSSKGAKPVTMYEEPNMLIKVVRDLFNEDFTELIVDGKRSFNTVRAYVDSMAPDLADRV 664
Query: 461 ELYDKR----IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
Y + F+ + I+E+++ LS++V LP+GG+LVI++TEA+ IDVN G G
Sbjct: 665 VRYRAKDHGGQDAFEAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTG 723
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G + E+ + NL AA++I R++RLRD+GG+IVVDFIDM N+ LV +K+A+ RD
Sbjct: 724 SGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRLKEALGRD 783
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +VSE++ GL+++TRKR
Sbjct: 784 RTRHQVSEVTSLGLVQMTRKR 804
>gi|408369297|ref|ZP_11167078.1| ribonuclease G [Galbibacter sp. ck-I2-15]
gi|407745043|gb|EKF56609.1| ribonuclease G [Galbibacter sp. ck-I2-15]
Length = 515
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 188/316 (59%), Gaps = 14/316 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQ 355
++VQ+VKE + TKGP +++ + R+ +L+ DR+ VS+KI + E+ RLK + ++++
Sbjct: 122 ILVQIVKEPISTKGPRISSELSIAGRYLVLVPFSDRVSVSQKIESKAEKDRLKRLVQSIR 181
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFG+ +RTVA G + EL KDL L W + + A P +
Sbjct: 182 PKGFGVIVRTVAEGKKVAELDKDLNNLFKKWNGLCKKIYKAPH----------PSKVLNE 231
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
M + SI++D FN+ + VD Y ++ Y+ +IAP V+LY+ ++P+F+KF +
Sbjct: 232 MNRAASILRDVFNDDFTGIYVDDETLYEQIKEYVHEIAPKKESIVKLYESKVPIFEKFGV 291
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V G LVIE TEAL +DVN G+ S+E+ L+VNL AA +
Sbjct: 292 ERQIKTSFGRTVSTSKGAYLVIEHTEALHVVDVNSGNRS-NKAKSQEETALEVNLIAATE 350
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
+AR+LRLRD+GGIIVVDFIDM + N+R +++ +++ ++ DR+ K+ S+ GL++ITR
Sbjct: 351 LARQLRLRDMGGIIVVDFIDMTNTENRRKLFDHLREEMKDDRAKHKILPPSKFGLIQITR 410
Query: 596 KRAMMEQ--KADPENP 609
+R E K ENP
Sbjct: 411 QRVRPEVNIKTREENP 426
>gi|424903423|ref|ZP_18326936.1| ribonuclease E [Burkholderia thailandensis MSMB43]
gi|390931296|gb|EIP88697.1| ribonuclease E [Burkholderia thailandensis MSMB43]
Length = 1045
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 184/309 (59%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 90 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 150 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGHPGQ 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 202 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKVKRYHDDVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 262 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 320 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMELSRQR 388
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|336398225|ref|ZP_08579025.1| ribonuclease, Rne/Rng family [Prevotella multisaccharivorax DSM
17128]
gi|336067961|gb|EGN56595.1| ribonuclease, Rne/Rng family [Prevotella multisaccharivorax DSM
17128]
Length = 524
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 132/398 (33%), Positives = 222/398 (55%), Gaps = 23/398 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + N + +V D HP
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYIKQVESDR--KHPVPFAK 99
Query: 279 SKHTPGEKTWLQVQK----GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ P + VQ+ G +V+VQ+VKE + TKGP LT+ RF +LI D++
Sbjct: 100 ATRLPELQKDGSVQQTLKVGQEVLVQIVKEPISTKGPRLTSELSFAGRFLVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G E++RLK + ++++P+ G+ +RTVA G + EL +L+ L S W++ +E
Sbjct: 160 VSSKIKSGEEKSRLKQLIQSIKPKNCGVIVRTVAEGKRVAELDAELKVLTSRWQSAIEKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ P L++ G+ +++++D FN + + V++ EV Y+ IA
Sbjct: 220 QKTQ---------QRPQLIYEETGRAVAMLRDLFNPTYENIYVNNEEICKEVKDYVTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ + V+ Y ++P+FD FN+ ++I + K V +G L+IE TEA+ +DVN G+
Sbjct: 271 PEKANIVKTYTGKVPIFDNFNVTKQIKSSFGKTVNYAHGAYLIIEHTEAMHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ + +E LD NL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 S-KNQNGQEGTALDTNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKDM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRA--MMEQKADPENP 609
++DR+ + LS+ GLM+ITR+R M+ + E P
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDVNVEEECP 427
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE E +N ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQNESRSANYSVGNIYVAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|333374661|ref|ZP_08466500.1| ribonuclease E [Kingella kingae ATCC 23330]
gi|332975051|gb|EGK11957.1| ribonuclease E [Kingella kingae ATCC 23330]
Length = 930
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 191/318 (60%), Gaps = 16/318 (5%)
Query: 284 GEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT 340
G K +Q +++GT++IVQV K+ G KG LT Y L R+ +L+ + R G VSR+I
Sbjct: 83 GGKARIQDVLKEGTQLIVQVEKDERGNKGAALTTYISLAGRYLVLMPNNPRGGGVSRRIE 142
Query: 341 GVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALA 399
G +R LK +A+ P G + RT G S EEL D LL W+ I + AA A
Sbjct: 143 GEDRAELKEAMAQLDVPNGMSIIARTAGIGRSAEELNWDFNYLLQLWRAI----EDAAAA 198
Query: 400 ADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
+ P LL + ++DY+ + +++VD+P Y +V+ ++ + P+ R
Sbjct: 199 HKQ------PYLLFMESSLVIRAIRDYYRPDISEILVDNPEVYEQVSEFMSYVMPNNLSR 252
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
++LY+ PLF + IE++I ++ V LP+GG++VI+ TEALVSIDVN GS
Sbjct: 253 LKLYEDHTPLFSRLQIEQQIETAFARSVNLPSGGAIVIDHTEALVSIDVNSARST--RGS 310
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E+ N+ AA+++AR++RLRD+GG++V+DFIDM D ++R V ++ A+++DR+
Sbjct: 311 DIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQRDVETTLRDALKKDRAR 370
Query: 580 VKVSELSRHGLMEITRKR 597
V++ +LSR GL+E++R+R
Sbjct: 371 VQMGKLSRFGLLELSRQR 388
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ + L++L +E + + ++Y GVVT++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYTGVVTRIEPSLEACFVDYGTD 63
Query: 138 RPSLMDIKHYREPFI 152
R + K +
Sbjct: 64 RHGFLPFKEISRAYF 78
>gi|172060046|ref|YP_001807698.1| ribonuclease [Burkholderia ambifaria MC40-6]
gi|171992563|gb|ACB63482.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MC40-6]
Length = 1059
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGIDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|404448601|ref|ZP_11013594.1| ribonuclease, Rne/Rng family protein [Indibacter alkaliphilus LW1]
gi|403766222|gb|EJZ27097.1| ribonuclease, Rne/Rng family protein [Indibacter alkaliphilus LW1]
Length = 524
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 185/309 (59%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+ + +++VQVVKE + TKGP L+ + R+ +L+ D + VS+KI + ER RL
Sbjct: 117 LSRNNQILVQVVKEPISTKGPRLSCELSIAGRYLVLVPFSDTVNVSKKIRSAEERKRLVR 176
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P FG+ IRTVA S+ EL KDL LL+TW+ M+ S A D+ +
Sbjct: 177 LITSIKPANFGVIIRTVAESQSVTELDKDLRNLLTTWEEGMKKL-SKAKNRDKIIG---- 231
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
M SI++D NE + V+ Y ++ SY++ IAP+ V+L++ + L
Sbjct: 232 -----EMSMASSIIRDLLNESFDAITVEDELIYDQIRSYIRTIAPEKEKIVKLFNGKAKL 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+ F IE++I ++ + + LP GG L+IE TEAL IDVN G+ S +E L N
Sbjct: 287 FENFGIEKQIKSLFGQTISLPQGGYLIIEHTEALHVIDVNSGNKS-NQESDQEMTALKTN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AAK+IAR+LRLRD+GGIIV+DFIDM NK+ +++ +K ++ DRS V L++ G
Sbjct: 346 LVAAKEIARQLRLRDMGGIIVIDFIDMKKAENKKAIFDAMKSEMQDDRSKNTVLPLTKFG 405
Query: 590 LMEITRKRA 598
LM+ITR+R
Sbjct: 406 LMQITRQRV 414
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST +LI+SS RIA+L+D+ LVEL E ++ + +YLG V K+V + AF++
Sbjct: 1 MSTELLIDSS-QNGSRIALLKDKNLVELHSEGGENQFKVGDIYLGTVRKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYRE 149
+G + + + HY++
Sbjct: 60 VGYDKDAFL---HYQD 72
>gi|270293859|ref|ZP_06200061.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275326|gb|EFA21186.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 524
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 187/306 (61%), Gaps = 11/306 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+S YHE+ Y+ IAP+ V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNSEAVYHEIKDYVTLIAPERAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K + +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEANALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRA 598
ITR+R
Sbjct: 409 ITRQRV 414
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVEL E + ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKQLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|163753444|ref|ZP_02160568.1| ribonuclease G [Kordia algicida OT-1]
gi|161327176|gb|EDP98501.1| ribonuclease G [Kordia algicida OT-1]
Length = 515
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 192/322 (59%), Gaps = 14/322 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
V+ ++VQ+VKE + TKGP +++ + R+ +L+ +R+ +S+KI + E+ RLK
Sbjct: 116 VKANQSILVQIVKEPISTKGPRISSELSIAGRYIVLVPFSERVSISQKIESKEEKDRLKR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P+GFG+ +RTVA G + EL +DL+ LL+ W + + A P
Sbjct: 176 LVLSIKPKGFGVIVRTVAEGKKVAELDQDLQNLLTKWSTMCKKLYKAEH----------P 225
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
+ M + SI++D FNE + VD Y+E+ Y+Q IAP V+LY ++PL
Sbjct: 226 SKVLSEMNKASSILRDIFNESFTGIQVDDEDLYYEIKEYVQKIAPKKESIVKLYQSKVPL 285
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+K+ +E +I K V + G LVIE TEAL IDVN G+ ++E L+VN
Sbjct: 286 FEKYGVERQIKTSFGKTVSMSKGAYLVIEHTEALHVIDVNSGNRS-NKAKTQEDTALEVN 344
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++IAR+LRLRD+GGIIV+DFIDM + ++R +++ +K ++ DR+ K+ S+ G
Sbjct: 345 LIAAREIARQLRLRDMGGIIVIDFIDMTNAEHRRTLFDHLKTEMKDDRAKHKILPPSKFG 404
Query: 590 LMEITRKRAMMEQ--KADPENP 609
L++ITR+R E K +NP
Sbjct: 405 LVQITRQRVRPEVNIKTREKNP 426
>gi|429726208|ref|ZP_19261014.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 473 str.
F0040]
gi|429147453|gb|EKX90479.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 473 str.
F0040]
Length = 526
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 196/322 (60%), Gaps = 11/322 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
V G +V+VQ+VKE + TKGP LT R+ +LI D++ VS KI + ER RLK
Sbjct: 116 VSVGQEVLVQIVKEPISTKGPRLTCEISFAGRYLVLIPFTDKVSVSTKIKSDAERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P+GFG+ IRTVA G + EL ++L L S W++ + + + A + ++ A
Sbjct: 176 LIHSIKPKGFGVIIRTVAEGRRVAELDQELRILESRWESAIANIQQA-----DSLDKAT- 229
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+ +++D FN + ++ Y EV Y+ IAP+ D V+LY +P+
Sbjct: 230 -LVYEETSRTVGLLRDLFNPSFSSIHINDKSVYEEVRDYVTLIAPEAKDIVKLYKGNVPI 288
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F++ ++I + L + V +G ++IE TEAL +D+N G+ +E LDVN
Sbjct: 289 FDNFSVTKQIKSSLGRTVTYKHGAYMIIEHTEALHVVDINSGNRS-KSVEGQEVNALDVN 347
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDMA N++ +YE + + +++DR+ + LS+ G
Sbjct: 348 LGAADELARQLRLRDMGGIIVVDFIDMAQPENRQQLYERMVENMKKDRARHNILPLSKFG 407
Query: 590 LMEITRKRA--MMEQKADPENP 609
LM+ITR+R M+ K + E P
Sbjct: 408 LMQITRQRVRPAMDVKVEEECP 429
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE E ++YL V K++P + FVN+G R + + HY
Sbjct: 16 IALLEDKRLVEFQQEGRSEQFAVGNIYLAKVRKIMPGLNACFVNVGYERDAFL---HY 70
>gi|387771561|ref|ZP_10127720.1| ribonuclease E [Haemophilus parahaemolyticus HK385]
gi|386908611|gb|EIJ73300.1| ribonuclease E [Haemophilus parahaemolyticus HK385]
Length = 982
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S P+G + S
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPEGYEFSGR- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IQEGQEVIVQVNKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I A+S
Sbjct: 146 DERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKNAAQSRP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+ GS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSSGSIVIDVTEALTAIDINSSRST--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKR 597
+ S +SR GL+E++R+R
Sbjct: 374 QFSRISRFGLLEMSRQR 390
>gi|198277145|ref|ZP_03209676.1| hypothetical protein BACPLE_03353 [Bacteroides plebeius DSM 17135]
gi|198269643|gb|EDY93913.1| S1 RNA binding domain protein [Bacteroides plebeius DSM 17135]
Length = 524
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 195/325 (60%), Gaps = 13/325 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAT---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ ++EV Y+ IAP+ V+ Y ++P+
Sbjct: 227 SLVYEETSRTVAMLRDLFNPSYENIYVNDETVFNEVKDYVALIAPERTGIVKRYTGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K V +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 287 FDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRS-KSTNGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRA--MMEQKADPENPKSW 612
LM+ITR+R M+ D + P +
Sbjct: 406 LMQITRQRVRPAMDVTTDEDCPVCF 430
>gi|297571631|ref|YP_003697405.1| ribonuclease, Rne/Rng family [Arcanobacterium haemolyticum DSM
20595]
gi|296931978|gb|ADH92786.1| ribonuclease, Rne/Rng family [Arcanobacterium haemolyticum DSM
20595]
Length = 839
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 187/307 (60%), Gaps = 10/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LTA L R +L+ G+SRK+ ERTRLK I
Sbjct: 342 LKSGDPVLVQVTKDPIGHKGARLTAQITLAGRHLVLVPGGAMTGISRKLPERERTRLKKI 401
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G+ +RT A G + E+L++D+E L+ +W +I +KS+ A P
Sbjct: 402 LKEVVPAEHGVIVRTAAEGATEEQLKQDVERLMKSWADIEAKSKSSKNA---------PS 452
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL + +V+D FNE + + + + ++ Y+ D++P+L DR+E +D +F
Sbjct: 453 LLKGEPELAVRVVRDIFNEDFRTLRISGDNAWETISHYVSDLSPELIDRLEKWDSNADIF 512
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ ++E++ ++V LP+GGSLVI++TEA+ IDVN G G G S E+ + NL
Sbjct: 513 QENRVDEQLQKAFDRKVFLPSGGSLVIDRTEAMTVIDVNTGK-FTGSGGSLEETVTRNNL 571
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIVVDFIDM ++N+ LV + + + RDR+ +V+E++ GL
Sbjct: 572 EAAEEIVRQLRLRDIGGIIVVDFIDMVLEANRDLVLRRLIECLGRDRTRHQVAEVTSLGL 631
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 632 VQMTRKR 638
>gi|149176937|ref|ZP_01855546.1| ribonuclease E [Planctomyces maris DSM 8797]
gi|148844192|gb|EDL58546.1| ribonuclease E [Planctomyces maris DSM 8797]
Length = 519
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 228/435 (52%), Gaps = 55/435 (12%)
Query: 248 HHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEG 305
H DG+ NG P + + +G + ++ + K +Q +++G++V+VQV+KEG
Sbjct: 81 HLTDGDGNGK-PGRGR--------NQKGRRVNERSVANKPPIQEILKRGSEVLVQVIKEG 131
Query: 306 LGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVIAKTLQPE-GFGLTI 363
LG KGPTL+ Y + R+ +++ R+G+SRKI + R L+ I L P G G +
Sbjct: 132 LGNKGPTLSTYISIPGRYLVIMPGLQRVGISRKIADEDVRKDLRTILTQLAPPPGLGFIV 191
Query: 364 RTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIV 423
RT + ++L++DL LL W I+ K P+ ++ + +
Sbjct: 192 RTAGIDRTADDLKRDLNYLLRLWGTIVGRIKKLP----------TPVEIYSESDMMIRTI 241
Query: 424 QDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNML 483
+D +N ++ + +D P Y +++ + P +RV+ Y P+F +++EI ++
Sbjct: 242 RDIYNSEIDTLYIDEPTAYQRARDFMKVVLPKHVNRVKHYTGNDPIFYNSKLDDEICSIQ 301
Query: 484 SKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLR 543
++ VP+ GGS+VI+QTEALV+IDVN G+ + + EK VN+ AA++I+R++RLR
Sbjct: 302 NRHVPMKGGGSIVIDQTEALVAIDVNSGN--YRADDNAEKTAFKVNMKAAEEISRQIRLR 359
Query: 544 DIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRA----- 598
D+GG+IV+DFIDM ++ ++R V +++ V+RDR+ KV +S GL+E+TR+R
Sbjct: 360 DLGGVIVIDFIDMREEKHRRSVERRLRELVKRDRARTKVLRISPFGLIEMTRQRIRPSLR 419
Query: 599 -------------------------MMEQKADPENPKSWPRFILRVDHHMCNYLTSGKRT 633
+M N K+ R +L V ++ NYL + +R
Sbjct: 420 RSMYEDCPSCRGTGQVKTAESMAIEVMRTLMTTVNKKNISRLVLNVHENVANYLNNKRRK 479
Query: 634 RLAVLSSSLKAWILL 648
+ L + + I++
Sbjct: 480 DITQLEETAQTSIII 494
>gi|359426775|ref|ZP_09217854.1| putative ribonuclease [Gordonia amarae NBRC 15530]
gi|358237931|dbj|GAB07436.1| putative ribonuclease [Gordonia amarae NBRC 15530]
Length = 1127
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 189/312 (60%), Gaps = 11/312 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT L R+ + + G+SRK+ VER RLK I
Sbjct: 533 LRPGDSVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRKLPDVERKRLKQI 592
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
L PE G+ IRT + G S +EL D+ L S WKNI AA+ +G G+ P
Sbjct: 593 LAKLLPEDAGVIIRTASEGVSADELGADIARLESQWKNI-----EAAVDDAKGKSGSGAP 647
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-IP 468
L+ + +V+D FNE KK++V+ + ++ V Y+ +APDL +RVE + KR
Sbjct: 648 RALYEEPDLLVRVVRDLFNEDFKKLIVEGDKAWNLVERYVSSVAPDLMERVEKFTKRHAD 707
Query: 469 LFDKF---NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAI 525
D F I+E++ L ++V LP+GG+L+IE TEA+ IDVN G G G + E+ +
Sbjct: 708 APDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVIDVNTGK-FTGSGGNLEETV 766
Query: 526 LDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSEL 585
NL AA++I R++RLRD+GG+I+VDFIDM +SN+ LV + +A+ RDR+ +VSE+
Sbjct: 767 TRNNLEAAEEIVRQMRLRDLGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEV 826
Query: 586 SRHGLMEITRKR 597
+ GL+++TRKR
Sbjct: 827 TSLGLVQMTRKR 838
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
++AVLED LVE + S+ ++YLG V ++P M AFV+IG R ++
Sbjct: 457 QVAVLEDGVLVEHFVTTETSSSLVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVL 510
>gi|225012359|ref|ZP_03702795.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-2A]
gi|225003336|gb|EEG41310.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-2A]
Length = 517
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 188/314 (59%), Gaps = 11/314 (3%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQ 355
V+VQVVKE + TKGP L++ L R+ +L+ DR+ +S+KI E+ RLK + ++++
Sbjct: 122 VLVQVVKEPISTKGPRLSSEISLAGRYMVLMPFSDRVSISQKIEDRAEKNRLKKLVQSIR 181
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFGL IRTVA G + L D++ LL+ WKN+ SA L + P +
Sbjct: 182 PKGFGLIIRTVAEGQKVAALDADIQQLLTRWKNL-----SAKLKQID----KYPTKVLSE 232
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
+ ++ SI++D F++ + VD E+ Y++ IAPD V+LY+ +P+F+KF I
Sbjct: 233 INRSSSILRDIFDDNFTGIHVDDAEMQSEIQDYIESIAPDKKGIVKLYENHLPIFEKFGI 292
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V + G LVIE TEAL IDVN G+ S+E+ L+VN+ +A +
Sbjct: 293 ERQIKSAFGTTVSMQKGAYLVIEHTEALHVIDVNSGNRS-NRSKSQEQTALEVNMISATE 351
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
IAR+LRLRD+GGIIVVDFID+ + N++ ++E + + DR+ K+ SR GL++ITR
Sbjct: 352 IARQLRLRDMGGIIVVDFIDLNSNENRKKLFEHLCNEMSTDRTKHKILPPSRFGLIQITR 411
Query: 596 KRAMMEQKADPENP 609
+R E + P
Sbjct: 412 QRVRPEMNIKTKEP 425
>gi|404258857|ref|ZP_10962174.1| putative ribonuclease [Gordonia namibiensis NBRC 108229]
gi|403402637|dbj|GAC00584.1| putative ribonuclease [Gordonia namibiensis NBRC 108229]
Length = 1163
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 186/311 (59%), Gaps = 10/311 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT L R+ + + G+SRK+ VER RLK I
Sbjct: 608 LKPGDHVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRKLPDVERKRLKQI 667
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L PE G+ IRT + G S EEL D+ L + WK+I E +SA + P
Sbjct: 668 LSKLVPEDAGVIIRTASEGVSAEELGADIARLEAKWKSIEESVESAKKSGS-----GAPK 722
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDK-RIPL 469
L+ + +V+D FNE KK+VV+ + ++ V Y+ +APDL +RVE + K
Sbjct: 723 ALYEEPDLLVRVVRDLFNEDFKKLVVEGDKAWNLVEGYVSSVAPDLMERVEKFSKPHADA 782
Query: 470 FDKF---NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
D F I+E++ L ++V LP+GG+L+IE TEA+ +DVN G G G + E+ +
Sbjct: 783 PDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGK-FTGSGGNLEETVT 841
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRDIGG+I+VDFIDM +SN+ LV + +A+ RDR+ +VSE++
Sbjct: 842 RNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVT 901
Query: 587 RHGLMEITRKR 597
GL+++TRKR
Sbjct: 902 SLGLVQMTRKR 912
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 81 NSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSR 138
++++ ++AVLED LVE + S+ ++YLG V ++P M AFV+IG R
Sbjct: 524 HAAVEDYTQVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGR 581
>gi|329120430|ref|ZP_08249096.1| ribonuclease E, partial [Neisseria bacilliformis ATCC BAA-1200]
gi|327462114|gb|EGF08442.1| ribonuclease E [Neisseria bacilliformis ATCC BAA-1200]
Length = 954
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/318 (38%), Positives = 190/318 (59%), Gaps = 16/318 (5%)
Query: 284 GEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT 340
G K +Q +++G +VIVQV K+ G KG LT + L R+ +L+ + R G VSR+I
Sbjct: 121 GGKVRIQDVLKEGMQVIVQVEKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIE 180
Query: 341 GVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALA 399
G ER LK +A+ P G L RT G S+EELQ D + LL W+ I E A A
Sbjct: 181 GEERQELKDAMAELNVPRGMSLIARTAGIGRSVEELQWDFDYLLKLWQAIEE----AGNA 236
Query: 400 ADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
E P LL + ++DYF + +++VD+ Y E++ ++ + P R
Sbjct: 237 HQE------PYLLFMESSLLIRAIRDYFRPDIGEILVDNAEVYEEISEFMSYVMPANTGR 290
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
++LY PLF +F IE +I + S+ V LP+GG++VI+ TEALVSIDVN G+
Sbjct: 291 LKLYQDHTPLFSRFQIEHQIESAFSRSVNLPSGGAIVIDHTEALVSIDVNSARAT--RGA 348
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E+ N+ AA+++AR++RLRD+GG+IV+DFIDM + ++R V ++ A+++DR+
Sbjct: 349 DIEETAFKTNMEAAEEVARQMRLRDLGGLIVIDFIDMENPKHQREVENTLRDALKKDRAR 408
Query: 580 VKVSELSRHGLMEITRKR 597
V+ ++LSR GL+E++R+R
Sbjct: 409 VQTAKLSRFGLLELSRQR 426
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ + L++L +E + + ++Y GV+T++ P++ FV+ G
Sbjct: 42 MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYGTD 101
Query: 138 RPSLMDIK 145
R + K
Sbjct: 102 RHGFLPFK 109
>gi|413958516|ref|ZP_11397755.1| ribonuclease E [Burkholderia sp. SJ98]
gi|413941096|gb|EKS73056.1| ribonuclease E [Burkholderia sp. SJ98]
Length = 1096
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 210/377 (55%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVEM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L+ PEG + RT G S EELQ DL L+ W+ I ++S
Sbjct: 145 DERQELRETMAQLELPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS----- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
GV G P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 200 --GVAGQ-PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNLSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|407714323|ref|YP_006834888.1| ribonuclease E [Burkholderia phenoliruptrix BR3459a]
gi|407236507|gb|AFT86706.1| ribonuclease E [Burkholderia phenoliruptrix BR3459a]
Length = 1084
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I AA
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGSAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVGKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|254252866|ref|ZP_04946184.1| Ribonucleases G and E [Burkholderia dolosa AUO158]
gi|124895475|gb|EAY69355.1| Ribonucleases G and E [Burkholderia dolosa AUO158]
Length = 1022
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 149/450 (33%), Positives = 230/450 (51%), Gaps = 44/450 (9%)
Query: 153 FPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDL-VQFEHNDDEE 211
FPP R T ++ + LE ++T VA D Q + + E E+
Sbjct: 52 FPPPRLTTARRR----QPSRLESFMKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQ 107
Query: 212 HDGDDFDVSEVLKNVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSH 269
G N+ ++ EP EA F ++ E H GF P K EV
Sbjct: 108 RKG----------NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR--- 146
Query: 270 TSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITS 329
Q K+ + +++G ++IVQV KE G KG LT + L R+ +L+ +
Sbjct: 147 ----QYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPN 202
Query: 330 CDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK 387
R G VSR+I G ER L+ LQ P+G + RT G S EELQ DL LL W+
Sbjct: 203 NPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWR 262
Query: 388 NIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTS 447
I AA + P+L++ + ++DYF + ++++D+ Y + +
Sbjct: 263 AIE--------AASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARA 314
Query: 448 YLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSID 507
++ + PD +V+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+ID
Sbjct: 315 FMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAID 374
Query: 508 VNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYE 567
VN G+ E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V +
Sbjct: 375 VNSARAT--KGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQ 432
Query: 568 EVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+K A++ DR+ V++ ++SR GLME++R+R
Sbjct: 433 RLKDALKHDRARVQMGKISRFGLMELSRQR 462
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 75 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 134
Query: 138 RPSLMDIK 145
R + K
Sbjct: 135 RHGFLPFK 142
>gi|427818315|ref|ZP_18985378.1| ribonuclease E [Bordetella bronchiseptica D445]
gi|410569315|emb|CCN17408.1| ribonuclease E [Bordetella bronchiseptica D445]
Length = 873
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|326330750|ref|ZP_08197053.1| ribonuclease, Rne/Rng family, partial [Nocardioidaceae bacterium
Broad-1]
gi|325951455|gb|EGD43492.1| ribonuclease, Rne/Rng family [Nocardioidaceae bacterium Broad-1]
Length = 624
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 185/304 (60%), Gaps = 12/304 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G KV+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK + K
Sbjct: 107 GQKVLVQVTKDPIGHKGARLTSQISLAGRFLVYVPDGTTSGISRKLPDTERNRLKTLLKE 166
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ +RT A G + EEL +D+E L + W++I + A G P LL+
Sbjct: 167 IVPDTAGVIVRTAAEGAAEEELTRDVERLKARWEDIEKRAG-----------GNAPQLLY 215
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
TL +V+D F E K+V+ ++ V Y+Q +APDL +RVE YD F +
Sbjct: 216 GEPDLTLKVVRDLFTEDFAKLVISGDSSWETVKDYVQSVAPDLEERVEKYDGEADAFAAY 275
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I+E+I L ++V LP+GGSL+I++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 276 RIDEQIAKGLDRKVWLPSGGSLIIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 334
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 335 EEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTRHQVAEVTSLGLVQM 394
Query: 594 TRKR 597
TRKR
Sbjct: 395 TRKR 398
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ +IAVLED+ LVE + +VYLG V ++P+M AF++IG R +++
Sbjct: 25 LTQIAVLEDKVLVEHYVARESQTSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVL 80
>gi|171317150|ref|ZP_02906352.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5]
gi|171097717|gb|EDT42547.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5]
Length = 1050
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGIDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 43.1 bits (100), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|285018395|ref|YP_003376106.1| ribonuclease E [Xanthomonas albilineans GPE PC73]
gi|283473613|emb|CBA16116.1| probable ribonuclease e protein [Xanthomonas albilineans GPE PC73]
Length = 1112
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/348 (37%), Positives = 200/348 (57%), Gaps = 22/348 (6%)
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
GE +GF P K E+ D + G +K T E +++G +V+VQV KE G KG
Sbjct: 62 GERHGFLPLK-EISRDYFQA---GVDHNKATIREL----LREGQEVVVQVDKEERGNKGA 113
Query: 312 TLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAG 369
LT + L R+ +L+ S GVSR+I G +R LK + K P+ G+ IRT G
Sbjct: 114 ALTTFISLAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLTIPDDMGVIIRTAGVG 173
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
EELQ DLE LL WK+I E AALA P L+++ + ++DY
Sbjct: 174 RDAEELQWDLEYLLQVWKSIAE----AALAK------PAPFLIYQESRLIIRALRDYLRA 223
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
+ +++VD+ Y + ++Q + P +++ Y IPLF++F IE +I + V L
Sbjct: 224 DIGEILVDTVEMYGDAKEFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRL 283
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549
P+GGS+V++QTEAL ++DVN GS E NL AA+++AR+LRLRD+GG++
Sbjct: 284 PSGGSIVVDQTEALTAVDVNSSRAT--KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLV 341
Query: 550 VVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
V+DFIDMA + ++R V ++ A++ DR+ V++ +SR GL+E++R+R
Sbjct: 342 VIDFIDMASNKHQREVENRLQNALKYDRARVQIGRISRFGLLEMSRQR 389
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYGGE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|33602744|ref|NP_890304.1| ribonuclease E [Bordetella bronchiseptica RB50]
gi|33577186|emb|CAE35743.1| ribonuclease E [Bordetella bronchiseptica RB50]
Length = 1046
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|311741290|ref|ZP_07715114.1| ribonuclease E [Corynebacterium pseudogenitalium ATCC 33035]
gi|311303460|gb|EFQ79539.1| ribonuclease E [Corynebacterium pseudogenitalium ATCC 33035]
Length = 1294
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 191/321 (59%), Gaps = 10/321 (3%)
Query: 281 HTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKIT 340
H K ++ G +V+VQV K+ +G KG LT L R+ + + G+SRK+
Sbjct: 489 HGRARKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPGGRSAGISRKLP 548
Query: 341 GVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER RLK I + P G IRT A E + D+ L S W++I+ HAK
Sbjct: 549 APERKRLKDILGRVVPGDGGAIIRTAAENVPEEAIATDVNRLHSRWEDIVAHAKK----- 603
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
++ +GA P+ ++ + +V+D FNE +++VD R+++ V +Y+ +APDL DRV
Sbjct: 604 EKSSKGAKPVTMYEEPNMLIKVVRDLFNEDFTELIVDGKRSFNTVRAYVDSMAPDLADRV 663
Query: 461 ELYDKR----IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
Y + F+ + I+E+++ LS++V LP+GG+LVI++TEA+ IDVN G G
Sbjct: 664 VRYRAKDHGGQDAFEAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTG 722
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G + E+ + NL AA++I R++RLRD+GG+IVVDFIDM N+ LV +K+A+ RD
Sbjct: 723 SGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRLKEALGRD 782
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +VSE++ GL+++TRKR
Sbjct: 783 RTRHQVSEVTSLGLVQMTRKR 803
>gi|427825827|ref|ZP_18992889.1| ribonuclease E [Bordetella bronchiseptica Bbr77]
gi|410591092|emb|CCN06189.1| ribonuclease E [Bordetella bronchiseptica Bbr77]
Length = 1045
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|254435343|ref|ZP_05048850.1| ribonuclease, Rne/Rng family protein [Nitrosococcus oceani AFC27]
gi|207088454|gb|EDZ65726.1| ribonuclease, Rne/Rng family protein [Nitrosococcus oceani AFC27]
Length = 761
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 198/347 (57%), Gaps = 24/347 (6%)
Query: 255 NGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPT 312
GF P K EV SH QG G++ +Q +++G +++VQV KE G KG
Sbjct: 62 QGFLPLK-EVTRSYFQSH-QGES------GDRPKVQDVLKEGQELVVQVEKEERGNKGAA 113
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
L+ + L R+ +L+ + R G VSR+I G ER+ L +TL+ PEG GL RT A G
Sbjct: 114 LSTFISLAGRYLVLMPNNPRAGGVSRRIEGEERSMLLEAMRTLEIPEGMGLITRTAAVGK 173
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ EELQ DL LL W +I AA EG P L+++ + ++DY
Sbjct: 174 NAEELQWDLNYLLHLWHSIQ--------AAAEGR--PAPFLIYQESDVIIRALRDYLRLD 223
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++D+P Y +++ + P +++LY ++ LF +F IE +I V LP
Sbjct: 224 IGEILIDTPDVYQRAYDFMRQVMPPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALP 283
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG++V++ TEAL +ID+N G E+ L NL AA++IAR+LRLRD+GG+IV
Sbjct: 284 SGGAIVVDYTEALTTIDINSARA--NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIV 341
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+DFIDMA N+R V +++ + DR+ V+V +SR GL+E++R+R
Sbjct: 342 IDFIDMAPLRNQRAVENRLRECLREDRARVQVGRISRFGLLEMSRQR 388
>gi|412341922|ref|YP_006970677.1| ribonuclease E [Bordetella bronchiseptica 253]
gi|408771756|emb|CCJ56560.1| ribonuclease E [Bordetella bronchiseptica 253]
Length = 1061
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|403721075|ref|ZP_10944300.1| putative ribonuclease [Gordonia rhizosphera NBRC 16068]
gi|403207415|dbj|GAB88631.1| putative ribonuclease [Gordonia rhizosphera NBRC 16068]
Length = 1123
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 191/314 (60%), Gaps = 15/314 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT L R+ + + G+SRK+ VER RLK I
Sbjct: 558 LKPGDNVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSSTGISRKLPDVERKRLKSI 617
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNI---MEHAKSAALAADEGVEGA 407
L PE G+ IRT + G S ++L D+E L WK+I +E AKS G +
Sbjct: 618 LGKLVPEDAGVIIRTASEGVSADDLAADIERLEKKWKDIDAAVEKAKS-------GNGSS 670
Query: 408 VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR- 466
P L+ + +V+D FNE KK+VV+ + ++ V Y++ +APDL DRVE + K+
Sbjct: 671 SPQALYEEPDLLVRVVRDLFNEDFKKLVVEGQKAWNLVERYIKAVAPDLMDRVERFSKQH 730
Query: 467 IPLFDKF---NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEK 523
D F I+E++ L ++V LP+GG+L+IE TEA+ IDVN G G GS+ E+
Sbjct: 731 ADAPDSFVVHRIDEQLAKALERKVWLPSGGTLIIEHTEAMTVIDVNTGK-FTGSGSNLEE 789
Query: 524 AILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVS 583
+ NL AA++I R++RLRDIGG+I+VDFIDM +SN+ LV + +++ RDR+ +VS
Sbjct: 790 TVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTESLARDRTRHQVS 849
Query: 584 ELSRHGLMEITRKR 597
E++ GL+++TRKR
Sbjct: 850 EVTSLGLVQMTRKR 863
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSR 138
++AVLED LVE + S+ ++YLG V ++P M AFV+IG R
Sbjct: 482 QVAVLEDGVLVEHFVTTETSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGR 531
>gi|417941939|ref|ZP_12585218.1| Putative cytoplasmic axial filament protein [Bifidobacterium breve
CECT 7263]
gi|376167703|gb|EHS86531.1| Putative cytoplasmic axial filament protein [Bifidobacterium breve
CECT 7263]
Length = 477
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 85 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 144
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I +AK +E G
Sbjct: 145 GIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 197
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 198 PKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 257
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 258 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 316
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 317 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 376
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 377 VTSLGLVQMTRKR 389
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 11 QISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 64
>gi|395763620|ref|ZP_10444289.1| ribonuclease E [Janthinobacterium lividum PAMC 25724]
Length = 1071
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 183/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQV KE G KG LT++ L R+ +L+ + R G VSR++ G ER L+
Sbjct: 93 LREGQEIMVQVEKEERGNKGAALTSFVSLAGRYLVLMPNNPRGGGVSRRVEGEERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G + RT G +++ELQ DL L+ W+ I KSA A
Sbjct: 153 TMDKLDLPAGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGKSANGA--------- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ Y + ++ + PD+ RV+ Y +P
Sbjct: 204 -FLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYDQAHQFMSHVMPDMVHRVKRYSDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALVS+DVN GS E +
Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARAT--RGSDIETTAFNT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA+++AR+LRLRD+GG+IV+DFIDM N+R V + +K A+ DR+ V++ ++SR
Sbjct: 321 NCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQRLKDALHHDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSYGED 63
Query: 138 RPSLMDIK-----HYRE 149
R + K ++RE
Sbjct: 64 RHGFLPFKEVARTYFRE 80
>gi|167753147|ref|ZP_02425274.1| hypothetical protein ALIPUT_01418 [Alistipes putredinis DSM 17216]
gi|167659461|gb|EDS03591.1| S1 RNA binding domain protein [Alistipes putredinis DSM 17216]
Length = 516
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 211/383 (55%), Gaps = 21/383 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESN---GFFPSKSEVPDDSHTSHPQG 275
V +++ +N + ++ G + F +L+ + P K + D+ P
Sbjct: 46 VRKIMPGLNAAFVNIGHEKDAFIHYLDLGSQFSSLQKLVASYQPGKRGIRLDAMKLEPPI 105
Query: 276 TKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGV 335
K K ++LQV G V+VQV KE + TKGP LTA L R +L+ ++ +
Sbjct: 106 EKSGKIG----SYLQV--GQTVMVQVAKEAISTKGPRLTADISLAGRNVVLVPFSSKVFL 159
Query: 336 SRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAK 394
S+KI + E+ RLK IA + P+ FG+ IRT A ++++D+ LL W+ +++ +
Sbjct: 160 SQKIRSAEEKKRLKGIAAAVLPKNFGVIIRTAAVEAKDSDIEQDIRSLLDKWQKTLQNIR 219
Query: 395 SAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAP 454
+ P L M + +I++D ++VVD YHE+ +Y++ I P
Sbjct: 220 ----------KNPAPAQLMSEMNRANTIIRDSLGGAFSQIVVDDEAMYHEIQNYIRQIEP 269
Query: 455 DLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGM 514
V+LY +P+FD F+I ++I ++ +K V L G L+IE TEA+ IDVN G+
Sbjct: 270 QSEKLVKLYKGNVPIFDNFDISKQIKSLFAKYVSLRRGAYLIIEHTEAMNVIDVNSGNRT 329
Query: 515 FGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVE 574
+E+ DVNLAAA++IAR+LRLRD+GGI+++DFIDM +N++L+YEE+ K +
Sbjct: 330 KAE-DDQEQTAFDVNLAAAREIARQLRLRDLGGIVIIDFIDMHKAANRQLLYEEMNKLMA 388
Query: 575 RDRSMVKVSELSRHGLMEITRKR 597
D++ V L++ GLM+ITR+R
Sbjct: 389 TDKAKHTVLPLTKFGLMQITRQR 411
Score = 45.8 bits (107), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+ ED+ LVEL E ++ +YLG V K++P + AFVNIG+ + + + HY
Sbjct: 16 IALCEDKVLVELNKEQCQTGFAVGDIYLGKVRKIMPGLNAAFVNIGHEKDAFI---HY 70
>gi|357406443|ref|YP_004918367.1| ribonuclease E [Methylomicrobium alcaliphilum 20Z]
gi|351719108|emb|CCE24782.1| Ribonuclease E (RNase E) [Methylomicrobium alcaliphilum 20Z]
Length = 731
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 129/391 (32%), Positives = 209/391 (53%), Gaps = 32/391 (8%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ K N+ II EP EA F ++ E +GF P K P+
Sbjct: 26 DFDIEVPSKEQKKSNIYKGIITRIEPSLEAAFVNY-------GSEKHGFLPFKEIAPNFR 78
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ ++ + + + Q+++G +++VQ+ KE G KG LT Y L + +L+
Sbjct: 79 QRAEGDTSEGGRASIKD----QIKEGQEIVVQIEKEERGNKGAALTTYISLAGTYLVLMP 134
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I G R L+ + L+ P+ GL +RT G S EELQ DL LL W
Sbjct: 135 NNPKAGGISRRIEGDTRNELREVMTALEIPDTMGLIVRTAGCGKSAEELQWDLNYLLQLW 194
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ I A E + P L+ + + ++D+ + ++++D +H V
Sbjct: 195 EAIERSAS----------EQSAPFLIFQESNVIIRALRDHLRGNIDEILIDKEEAFHLVQ 244
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+L+ + P + +LY +PLF ++ IE +I + V LP+GGS+VI+ TEAL SI
Sbjct: 245 KFLKQVMPHFLSKAKLYQDSVPLFSRYQIESQIEIAYGREVSLPSGGSIVIDHTEALTSI 304
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GS E+ L+ NL AA +IAR+LRLRD+GG+ V+DFIDM + N+R V
Sbjct: 305 DINSARAT--KGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMANKNQRAVE 362
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++ A++ DR+ ++ S +SR GL+E++R+R
Sbjct: 363 NRLRDALKIDRARIQTSRISRFGLLEMSRQR 393
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL + +E + ++Y G++T++ P++ AFVN G+
Sbjct: 4 MLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIITRIEPSLEAAFVNYGSE 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTK 161
+ + K I P FR R +
Sbjct: 64 KHGFLPFKE-----IAPNFRQRAE 82
>gi|134095278|ref|YP_001100353.1| RNase E [Herminiimonas arsenicoxydans]
gi|133739181|emb|CAL62230.1| Ribonuclease E (RNase E) [Herminiimonas arsenicoxydans]
Length = 973
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 184/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQV KE G KG LT++ L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQEIMVQVEKEERGNKGAALTSFVSLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G + RT G +++ELQ DL L+ W+ I E A G GA
Sbjct: 153 TMDKLDLPQGMSVIARTAGIGRNVDELQWDLNYLMQLWRAI-EGA---------GQSGAG 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ Y + ++ + PD+ RV+ Y +P
Sbjct: 203 AFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIYEQAQQFMSHVMPDMVHRVKRYRDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALVS+DVN GS E
Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARAT--RGSDIETTAFHT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA+++AR+LRLRD+GG+IV+DFIDM + N+R V +K A+ DR+ V++ ++SR
Sbjct: 321 NCEAAEEVARQLRLRDLGGLIVIDFIDMENSKNQREVETRLKDALHYDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVSYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|167837372|ref|ZP_02464255.1| ribonuclease E [Burkholderia thailandensis MSMB43]
Length = 559
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q K+
Sbjct: 40 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKEGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 197 SQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|385208625|ref|ZP_10035493.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1]
gi|385180963|gb|EIF30239.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1]
Length = 1086
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I AA
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|292493394|ref|YP_003528833.1| Rne/Rng family ribonuclease [Nitrosococcus halophilus Nc4]
gi|291581989|gb|ADE16446.1| ribonuclease, Rne/Rng family [Nitrosococcus halophilus Nc4]
Length = 785
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 136/379 (35%), Positives = 207/379 (54%), Gaps = 33/379 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
NV I EP EA F D+ + GF P K EV H QG
Sbjct: 40 NVYKGKITRIEPSLEAVFVDY-------GADRQGFLPLK-EVARGYFQPH-QGE------ 84
Query: 283 PGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKI 339
PGE+ +Q +++G +++VQV KE G KG L+ + L R+ +L+ + R G VSR+I
Sbjct: 85 PGERLKVQEVLKEGQELLVQVEKEERGNKGAALSTFVSLAGRYLVLMPNNPRAGGVSRRI 144
Query: 340 TGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAAL 398
G ER+ L + L+ PEG GL RT A G S EELQ DL LL W+ I A+
Sbjct: 145 EGEERSALLEAMRALEVPEGMGLIARTAALGKSTEELQWDLNYLLHLWQAIQVAAQ---- 200
Query: 399 AADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCD 458
E P L+++ + ++DY V ++++D+P Y +++ + P
Sbjct: 201 ------ERPAPFLIYQESDVIIRALRDYLRLDVGEILIDTPDVYQRAYDFMRQVMPHELQ 254
Query: 459 RVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHG 518
+++LY ++ LF +F IE +I V LP+GG++VI+ TEAL +ID+N G
Sbjct: 255 KLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVIDYTEALTTIDINSARA--NKG 312
Query: 519 SSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRS 578
E+ L NL +A++IAR+L+LRD+GG+IV+DFIDMA N+R V +++ + DR+
Sbjct: 313 EDIEETALSTNLESAEEIARQLKLRDLGGLIVIDFIDMAPLRNQRAVENRLRECLREDRA 372
Query: 579 MVKVSELSRHGLMEITRKR 597
V+V +SR GL+E++R+R
Sbjct: 373 RVQVGRISRFGLLEMSRQR 391
>gi|91784731|ref|YP_559937.1| ribonuclease E [Burkholderia xenovorans LB400]
gi|91688685|gb|ABE31885.1| RNAse E [Burkholderia xenovorans LB400]
Length = 1096
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I AA
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|377821361|ref|YP_004977732.1| ribonuclease E [Burkholderia sp. YI23]
gi|357936196|gb|AET89755.1| ribonuclease E [Burkholderia sp. YI23]
Length = 1114
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 187/309 (60%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ PEG + RT G S EELQ DL L+ W+ I ++S GV G
Sbjct: 153 TMAQLELPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS-------GVAGQ- 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNLSKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 383 GLMELSRQR 391
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|167563552|ref|ZP_02356468.1| ribonuclease E [Burkholderia oklahomensis EO147]
Length = 551
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q K+
Sbjct: 37 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKEGVDM 81
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 82 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 141
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 142 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 193
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 194 SQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKV 253
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 254 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 311
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 312 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 371
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 372 QMGKISRFGLMELSRQR 388
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|77166294|ref|YP_344819.1| ribonuclease E and G [Nitrosococcus oceani ATCC 19707]
gi|76884608|gb|ABA59289.1| RNAse E [Nitrosococcus oceani ATCC 19707]
Length = 764
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 198/347 (57%), Gaps = 24/347 (6%)
Query: 255 NGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPT 312
GF P K EV SH QG G++ +Q +++G +++VQV KE G KG
Sbjct: 65 QGFLPLK-EVTRSYFQSH-QGES------GDRPKVQDVLKEGQELVVQVEKEERGNKGAA 116
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
L+ + L R+ +L+ + R G VSR+I G ER+ L +TL+ PEG GL RT A G
Sbjct: 117 LSTFISLAGRYLVLMPNNPRAGGVSRRIEGEERSMLLEAMRTLEIPEGMGLITRTAAVGK 176
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ EELQ DL LL W +I AA EG P L+++ + ++DY
Sbjct: 177 NAEELQWDLNYLLHLWHSIQ--------AAAEGR--PAPFLIYQESDVIIRALRDYLRLD 226
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++D+P Y +++ + P +++LY ++ LF +F IE +I V LP
Sbjct: 227 IGEILIDTPDVYQRAYDFMRQVMPPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALP 286
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG++V++ TEAL +ID+N G E+ L NL AA++IAR+LRLRD+GG+IV
Sbjct: 287 SGGAIVVDYTEALTTIDINSARA--NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIV 344
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+DFIDMA N+R V +++ + DR+ V+V +SR GL+E++R+R
Sbjct: 345 IDFIDMAPLRNQRAVENRLRECLREDRARVQVGRISRFGLLEMSRQR 391
>gi|365122384|ref|ZP_09339287.1| rne/Rng family ribonuclease [Tannerella sp. 6_1_58FAA_CT1]
gi|363642624|gb|EHL81970.1| rne/Rng family ribonuclease [Tannerella sp. 6_1_58FAA_CT1]
Length = 558
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 188/306 (61%), Gaps = 12/306 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +++VQ+ KE + +KGP LTA RF +L+ D++ +S+KI + E+ RLK + +
Sbjct: 154 GQEILVQISKEPISSKGPRLTAEISFAGRFLVLLPFSDKVSISQKIKSNEEKARLKQLIQ 213
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA + EL +L+ L+ W++ + + A P L+
Sbjct: 214 SIKPKNFGVIVRTVAENKRVAELDNELKTLVKCWEDCLVKLQKAK----------TPSLI 263
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
G+T+ +++D F+ + + V+ Y ++ +Y+ IAP+ D V+LY +P+FD
Sbjct: 264 FEETGRTVGVLRDIFSPSFENIYVNDEDAYQQIYNYVSLIAPERKDIVKLYKGNLPIFDN 323
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V NG L+IE TEAL IDVN G+ + +E LDVNLAA
Sbjct: 324 FAITKQIKSSFGKTVSFKNGAYLIIEHTEALHVIDVNSGNRS-KSTAGQESNALDVNLAA 382
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A++IAR+LRLRD+GGIIV+D+IDM + N++ +Y+ +K+ + +DR+ + LS+ GLM+
Sbjct: 383 AEEIARQLRLRDMGGIIVIDYIDMMEPDNRQKLYDRMKELMAQDRARHNILPLSKFGLMQ 442
Query: 593 ITRKRA 598
ITR+R
Sbjct: 443 ITRQRV 448
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+L+D++LVEL E + +YLG V KL+P + AFV++G + + + HY
Sbjct: 51 IALLDDKRLVELQKEARNISFSVGDIYLGRVKKLMPGLNAAFVDVGYEKDAFL---HY 105
>gi|427815760|ref|ZP_18982824.1| ribonuclease E [Bordetella bronchiseptica 1289]
gi|410566760|emb|CCN24329.1| ribonuclease E [Bordetella bronchiseptica 1289]
Length = 1038
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|410473811|ref|YP_006897092.1| ribonuclease E [Bordetella parapertussis Bpp5]
gi|408443921|emb|CCJ50615.1| ribonuclease E [Bordetella parapertussis Bpp5]
Length = 1033
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 90 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 150 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 199
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 200 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 259
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 260 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 317
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 318 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 377
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 378 GLMELSRQR 386
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 1 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 60
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 61 RHGFLPFKEVARSFFKEGVDVRTAR 85
>gi|381401663|ref|ZP_09926557.1| ribonuclease E [Kingella kingae PYKK081]
gi|380833343|gb|EIC13217.1| ribonuclease E [Kingella kingae PYKK081]
Length = 905
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 191/318 (60%), Gaps = 16/318 (5%)
Query: 284 GEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT 340
G K +Q +++GT++IVQV K+ G KG LT Y L R+ +L+ + R G VSR+I
Sbjct: 80 GGKARIQDVLKEGTQLIVQVEKDERGNKGAALTTYISLAGRYLVLMPNNPRGGGVSRRIE 139
Query: 341 GVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALA 399
G +R LK +A+ P G + RT G S EEL D LL W+ I + AA A
Sbjct: 140 GEDRAELKEAMAQLDVPNGMSIIARTAGIGRSAEELNWDFNYLLQLWRAI----EDAAAA 195
Query: 400 ADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
+ P LL + ++DY+ + +++VD+P Y +V+ ++ + P+ R
Sbjct: 196 HKQ------PYLLFMESSLVIRAIRDYYRPDISEILVDNPEVYEQVSEFMSYVMPNNLSR 249
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
++LY+ PLF + IE++I ++ V LP+GG++VI+ TEALVSIDVN GS
Sbjct: 250 LKLYEDHTPLFSRLQIEQQIETAFARSVNLPSGGAIVIDHTEALVSIDVNSARST--RGS 307
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E+ N+ AA+++AR++RLRD+GG++V+DFIDM D ++R V ++ A+++DR+
Sbjct: 308 DIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQRDVETTLRDALKKDRAR 367
Query: 580 VKVSELSRHGLMEITRKR 597
V++ +LSR GL+E++R+R
Sbjct: 368 VQMGKLSRFGLLELSRQR 385
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ + L++L +E + + ++Y GVVT++ P++ FV+ G
Sbjct: 1 MLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYTGVVTRIEPSLEACFVDYGTD 60
Query: 138 RPSLMDIKHYREPFI 152
R + K +
Sbjct: 61 RHGFLPFKEISRAYF 75
>gi|345870202|ref|ZP_08822156.1| ribonuclease, Rne/Rng family [Thiorhodococcus drewsii AZ1]
gi|343922144|gb|EGV32849.1| ribonuclease, Rne/Rng family [Thiorhodococcus drewsii AZ1]
Length = 980
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 129/379 (34%), Positives = 211/379 (55%), Gaps = 33/379 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F D+ E +GF P K P K
Sbjct: 40 NIYKGIITRVEPSLEAAFVDY-------GAERHGFLPLKEIA---RAYFEPDSVK----- 84
Query: 283 PGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKI 339
PG +T ++ V++G +V++Q+ KE G KG LT + L R+ +L+ + R G VSR+I
Sbjct: 85 PGSRTNIKEAVREGREVVIQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRI 144
Query: 340 TGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAAL 398
G +R+ L+ +++ PE GL +RT G ++EELQ DL+ LL WK I+ ++S
Sbjct: 145 EGQDRSELRDAMSQLAIPEDMGLIVRTAGVGKNVEELQWDLDYLLQLWKAIVASSESRK- 203
Query: 399 AADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCD 458
P L+++ + ++DY + ++V+D Y ++++ + P
Sbjct: 204 ---------APFLIYQESDVIIRSIRDYLRVDIGEIVIDDRAVYERAENFIKQVMPQNLK 254
Query: 459 RVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHG 518
++ LY +PLF ++ IE +I + + V LP+GGS+VI+ TEAL SID+N G
Sbjct: 255 KLRLYQDEVPLFTRYQIETQIESAFQREVRLPSGGSVVIDHTEALTSIDINSARAT--KG 312
Query: 519 SSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRS 578
+ E+ + NL AA +IAR+LRLRD+GG+ V+DFIDM ++R V +++A+++DR+
Sbjct: 313 ADIEETAFNTNLEAADEIARQLRLRDLGGLFVIDFIDMTPPKHQREVENRLREALKQDRA 372
Query: 579 MVKVSELSRHGLMEITRKR 597
V+V+ +SR GL+E++R+R
Sbjct: 373 RVQVARISRFGLLEMSRQR 391
>gi|420252526|ref|ZP_14755633.1| ribonuclease, Rne/Rng family [Burkholderia sp. BT03]
gi|398054413|gb|EJL46534.1| ribonuclease, Rne/Rng family [Burkholderia sp. BT03]
Length = 1097
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 188/309 (60%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 93 LKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ PEG + RT G S EELQ DL L+ W+ I ++S G +G
Sbjct: 153 TMSQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS-------GSQGQ- 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD ++V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVNKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 383 GLMELSRQR 391
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK-----HYRE 149
R + K ++RE
Sbjct: 64 RHGFLPFKEVARQYFRE 80
>gi|390575904|ref|ZP_10255984.1| ribonuclease E [Burkholderia terrae BS001]
gi|389932045|gb|EIM94093.1| ribonuclease E [Burkholderia terrae BS001]
Length = 1097
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 188/309 (60%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 93 LKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ PEG + RT G S EELQ DL L+ W+ I ++S G +G
Sbjct: 153 TMSQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS-------GSQGQ- 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD ++V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVNKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 383 GLMELSRQR 391
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK-----HYRE 149
R + K ++RE
Sbjct: 64 RHGFLPFKEVARQYFRE 80
>gi|307730550|ref|YP_003907774.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003]
gi|307585085|gb|ADN58483.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003]
Length = 1097
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 209/377 (55%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I ++S
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS----- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G G P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 200 --GTAGQ-PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 42.4 bits (98), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 39/69 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|87118929|ref|ZP_01074827.1| ribonuclease E [Marinomonas sp. MED121]
gi|86165320|gb|EAQ66587.1| ribonuclease E [Marinomonas sp. MED121]
Length = 1029
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 132/364 (36%), Positives = 196/364 (53%), Gaps = 29/364 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQV-QKGT 295
EA F D+ D H GF P K S +K H G V +G
Sbjct: 51 EAAFVDYG-ADRH------GFLPLK-------EISKTYFSKKPNHGDGRINIKDVLSEGQ 96
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+V+VQV KE G KG LT + L R+ +L+ + R G +SR+I G +RT+LK L
Sbjct: 97 EVVVQVDKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGISRRIDGDDRTQLKEAMSGL 156
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+ GL +RT G S EELQ DL+ L + W +I A E P L++
Sbjct: 157 NMPDNGGLIVRTAGVGRSTEELQWDLDYLNTLWNSITGAAS----------EKPAPFLIY 206
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY E + ++++D Y + +++ + P R++ Y + PLF++F
Sbjct: 207 QESNIVIRAIRDYLREDIGEVLIDEKSVYQDAMNFVMQVMPHFKSRIKQYTDQTPLFNRF 266
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA
Sbjct: 267 QIESQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAA 324
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
+IAR+LRLRDIGG++V+DFIDM N++ V +K A+E DR+ V++ +SR GL+E+
Sbjct: 325 DEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVENRMKDALEADRARVQLGRISRFGLLEM 384
Query: 594 TRKR 597
+R+R
Sbjct: 385 SRQR 388
>gi|410421219|ref|YP_006901668.1| ribonuclease E [Bordetella bronchiseptica MO149]
gi|408448514|emb|CCJ60197.1| ribonuclease E [Bordetella bronchiseptica MO149]
Length = 1045
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|326382839|ref|ZP_08204529.1| ribonuclease, Rne/Rng family [Gordonia neofelifaecis NRRL B-59395]
gi|326198429|gb|EGD55613.1| ribonuclease, Rne/Rng family [Gordonia neofelifaecis NRRL B-59395]
Length = 1039
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 186/311 (59%), Gaps = 10/311 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT L R+ + + G+SRK+ ER RLK I
Sbjct: 520 LKPGDYVLVQVSKDPIGHKGARLTTQISLAGRYLVYVPGGTSTGISRKLPDTERKRLKQI 579
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L P+ G+ IRT + G S EEL D+E L + WK+I AA P
Sbjct: 580 LAKLVPDEAGVIIRTASEGVSAEELGADIERLEAQWKSI-----EAAADGHRSKASGTPK 634
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR---I 467
L+ + +V+D FNE +K+VV+ R + +V+ Y++D+APDL +R+E + K
Sbjct: 635 ALYEEPDLLVRVVRDLFNEDFRKLVVEGDRAWSQVSGYVRDVAPDLSERLEEFTKNHADA 694
Query: 468 P-LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
P F I+E++ L ++V LP+GG+L+IE TEA+ +DVN G G G + E+ +
Sbjct: 695 PDSFAVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGK-FTGSGGNLEETVT 753
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRDIGG+I+VDFIDM +SN+ LV + +A+ RDR+ +VSE++
Sbjct: 754 RNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVT 813
Query: 587 RHGLMEITRKR 597
GL+++TRKR
Sbjct: 814 SLGLVQMTRKR 824
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED LVE + S ++YLG V ++P M AFV+IG R ++
Sbjct: 444 QIAVLEDGVLVEHFVTTETSQSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVL 497
>gi|240948236|ref|ZP_04752622.1| ribonuclease E [Actinobacillus minor NM305]
gi|240297275|gb|EER47816.1| ribonuclease E [Actinobacillus minor NM305]
Length = 973
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 205/381 (53%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPSDYVFNGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I A+S
Sbjct: 142 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKNAAQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ ++ S +SR GL+E++R+R
Sbjct: 370 RARIQFSRISRFGLLEMSRQR 390
>gi|329947026|ref|ZP_08294438.1| S1 RNA binding domain protein [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328526837|gb|EGF53850.1| S1 RNA binding domain protein [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 986
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 188/304 (61%), Gaps = 6/304 (1%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L R+ +L+ G+SRK+ ER+RLK I K
Sbjct: 420 GDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGGTMTGISRKLPDTERSRLKKILKR 479
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ +RT A G S E+L D+E L++ W++I + A S + G P+LL
Sbjct: 480 IVPDSAGVIVRTAAEGASQEQLTADVERLVAQWESIDKKASSVMKGS-----GKAPVLLK 534
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ +++D FNE ++++V T+ ++ Y+ +++PDL +R+E + +F
Sbjct: 535 GEPELAVRVIRDVFNEDFRRLIVSGDTTWSTISQYVDEVSPDLAERLEHWTGPEDVFAAH 594
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
++E++ ++V LP+GG+LVI++TEA+ IDVN G G G + E+ + NL AA
Sbjct: 595 RVDEQLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR-FTGAGGTLEETVTRNNLEAA 653
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGG++V+DF+DM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 654 EEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECLGRDRTRHQVTEVTSLGLVQM 713
Query: 594 TRKR 597
TRKR
Sbjct: 714 TRKR 717
>gi|291457090|ref|ZP_06596480.1| putative cytoplasmic axial filament protein [Bifidobacterium breve
DSM 20213 = JCM 1192]
gi|291380925|gb|EFE88443.1| putative cytoplasmic axial filament protein [Bifidobacterium breve
DSM 20213 = JCM 1192]
Length = 477
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 85 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 144
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I +AK +E G
Sbjct: 145 GIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 197
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 198 PKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYGRIEEYLDTMAPDLKDKLEKWDPAEH 257
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 258 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 316
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 317 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 376
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 377 VTSLGLVQMTRKR 389
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 11 QISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 64
>gi|167619212|ref|ZP_02387843.1| ribonuclease E [Burkholderia thailandensis Bt4]
Length = 588
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q K+
Sbjct: 37 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKEGVDM 81
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 82 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 141
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 142 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 193
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 194 SQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKV 253
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 254 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 311
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 312 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 371
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 372 QMGKISRFGLMELSRQR 388
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|167570711|ref|ZP_02363585.1| ribonuclease E [Burkholderia oklahomensis C6786]
Length = 711
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 184/309 (59%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 90 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 150 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGHPGQ 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 202 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKVKRYHDDVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 262 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 320 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 379
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 380 GLMELSRQR 388
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|329960939|ref|ZP_08299218.1| S1 RNA binding domain protein [Bacteroides fluxus YIT 12057]
gi|328532225|gb|EGF59029.1| S1 RNA binding domain protein [Bacteroides fluxus YIT 12057]
Length = 524
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 189/306 (61%), Gaps = 11/306 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V++ +HE+ Y+ IAP+ V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNNEAVFHEIKDYVTLIAPERAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRI-KNANGQEANALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCQNMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRA 598
ITR+R
Sbjct: 409 ITRQRV 414
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|424776490|ref|ZP_18203471.1| ribonuclease E [Alcaligenes sp. HPC1271]
gi|422888310|gb|EKU30699.1| ribonuclease E [Alcaligenes sp. HPC1271]
Length = 1113
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 183/307 (59%), Gaps = 14/307 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G ++I+QV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 95 EGQELIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELREAM 154
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L P+G + RT G S+EELQ DL L+ W I A+ + A PI
Sbjct: 155 DQLDIPQGMSIIARTAGIGRSVEELQWDLNYLMQLWTAIDGAAR----------DNAAPI 204
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L++ + ++DYF+ + ++++D+ + + +++ + PD RV++Y IPLF
Sbjct: 205 LIYLESSLVIRAIRDYFSPDIGEILIDTDEIHEQAAAFMSVVMPDNLHRVKMYRDDIPLF 264
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+F IE +I S+ V LP+GG++VI+ TEALV+IDVN G+ E+ L N
Sbjct: 265 SRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAIDVNSARST--RGADIEETALRTNQ 322
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR GL
Sbjct: 323 EAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHLDRARVQMGKISRFGL 382
Query: 591 MEITRKR 597
ME++R+R
Sbjct: 383 MELSRQR 389
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FV+ G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSYGEE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|33591687|ref|NP_879331.1| ribonuclease E [Bordetella pertussis Tohama I]
gi|384202968|ref|YP_005588707.1| ribonuclease E [Bordetella pertussis CS]
gi|33571330|emb|CAE44805.1| ribonuclease E [Bordetella pertussis Tohama I]
gi|332381082|gb|AEE65929.1| ribonuclease E [Bordetella pertussis CS]
Length = 1042
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVIPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|408416477|ref|YP_006627184.1| ribonuclease E [Bordetella pertussis 18323]
gi|401778647|emb|CCJ64087.1| ribonuclease E [Bordetella pertussis 18323]
Length = 1040
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVIPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|227504028|ref|ZP_03934077.1| ribonuclease E [Corynebacterium striatum ATCC 6940]
gi|227199358|gb|EEI79406.1| ribonuclease E [Corynebacterium striatum ATCC 6940]
Length = 1132
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 127/321 (39%), Positives = 192/321 (59%), Gaps = 16/321 (4%)
Query: 284 GEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE 343
G K ++ G +V+VQV K+ +G KG LT L R+ + + G+SRK+ E
Sbjct: 430 GRKIENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPGGRSAGISRKLPVPE 489
Query: 344 RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIM---EHAKSAALAA 400
R RLK I + + P G IRT A S E + D+ L + W++I +H KS
Sbjct: 490 RKRLKGILERVIPGDGGAIIRTAAENVSEEAIATDVNRLHNLWEDITKRSDHEKS----- 544
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+GA P+ L+ + +V+D FNE K++VD R+Y+ V++Y+ +A DL DRV
Sbjct: 545 ---TKGAKPVTLYEEPDLLVKVVRDLFNEDFTKLIVDGRRSYNTVSAYVDSMAHDLADRV 601
Query: 461 ELYDKRI----PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
E YD R F + I+E+++ LS++V LP+GG+LVI++TEA+ IDVN G G
Sbjct: 602 EKYDAREHGGEDAFVTYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTG 660
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G + E+ + NL AA++I R++RLRD+GG+IVVDFIDM N+ LV +K+A+ RD
Sbjct: 661 SGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRLKEALGRD 720
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ +VSE++ GL+++TRKR
Sbjct: 721 RTRHQVSEVTSLGLVQMTRKR 741
>gi|452127522|ref|ZP_21940103.1| ribonuclease E [Bordetella holmesii H558]
gi|451926802|gb|EMD76932.1| ribonuclease E [Bordetella holmesii H558]
Length = 1043
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 186/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGENRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G S+EELQ DL L+ W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRSVEELQWDLAYLMQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NVEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFI 152
R + K F
Sbjct: 64 RHGFLPFKEVARSFF 78
>gi|423713845|ref|ZP_17688105.1| rne/Rng family ribonuclease [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395421651|gb|EJF87887.1| rne/Rng family ribonuclease [Bartonella vinsonii subsp. arupensis
OK-94-513]
Length = 876
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 175/594 (29%), Positives = 282/594 (47%), Gaps = 54/594 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A EE A +N TE +
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL--------ALLEEEEKAAVGEN-----YTESLP 107
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
E +++ + DE + DV + + I+DD E E F H D E
Sbjct: 108 EETNKNKKRSRKTKKDERNSIIAADVENDMTS-EAIILDDTE-----EVFNANVSHDDIE 161
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
G + E+P T K K +++ ++VQV+KE G KG L
Sbjct: 162 MVGAEDVREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAAL 211
Query: 314 TAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT A
Sbjct: 212 TTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRTAGANR 271
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L W + ++ L + P L+H ++D +N+
Sbjct: 272 TKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLVHEESNLIKRSIRDLYNKN 321
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V L
Sbjct: 322 INEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLHPQVSLK 381
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 382 SGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRDLAGLIV 439
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR---AMMEQKADP- 606
+DFIDM ++ N RLV +++K+ ++ DR+ ++V +S GL+E++R+R +++E P
Sbjct: 440 IDFIDMLEERNVRLVEKKLKECLKSDRARIQVGHISHFGLLEMSRQRIRVSVLESTTQPC 499
Query: 607 ------ENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGF 654
N +S L V + YL + + V + A +L R
Sbjct: 500 PHCAGTGNVRSESSIALHVMRSIEEYLLRNPQHNITVRTPVTTALYILNHKRNI 553
>gi|379735003|ref|YP_005328509.1| ribonuclease, Rne/Rng family [Blastococcus saxobsidens DD2]
gi|378782810|emb|CCG02476.1| Ribonuclease, Rne/Rng family [Blastococcus saxobsidens DD2]
Length = 1066
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 184/306 (60%), Gaps = 10/306 (3%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIA 351
+ G K++VQV K+ +G KG LT L RF + + G+SRK+ ER RLK I
Sbjct: 474 KSGDKILVQVTKDPIGHKGARLTQQVNLPGRFLVYVPGGSMTGISRKLPDTERQRLKDIL 533
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
K + PE G+ IRT A G S EEL +D+ L + W+ I + A+S + A P L
Sbjct: 534 KRIVPEDAGVIIRTAAEGASEEELTRDVNRLTAQWEVIQKKAESTSNA---------PAL 584
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
L+ + +++D FNE K++VV + V +Y+ ++P+L +R+ Y +F
Sbjct: 585 LYGEPDLAIRVIRDVFNEDFKELVVQGDDAWDTVEAYVAHVSPELTERLTRYTGEGDVFR 644
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
++E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + N+
Sbjct: 645 DLRVDEQLTKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEQTVTRNNME 703
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+
Sbjct: 704 AAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRDRTKHQVAEVTSLGLV 763
Query: 592 EITRKR 597
++TRKR
Sbjct: 764 QMTRKR 769
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++++ F++ ++ + QR IAVLED+ LVE + + +VYLG V
Sbjct: 370 ILTESEFLARREAVDRKMVIRQRGERTQIAVLEDDVLVEHYVTQATATSFAGNVYLGRVQ 429
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 430 NVLPSMEAAFVDIGKGRNAVV 450
>gi|393758435|ref|ZP_10347256.1| ribonuclease E [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393164854|gb|EJC64906.1| ribonuclease E [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 1113
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 183/307 (59%), Gaps = 14/307 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G ++I+QV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 95 EGQELIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELREAM 154
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L P+G + RT G S+EELQ DL L+ W I A+ + A PI
Sbjct: 155 DQLDIPQGMSIIARTAGIGRSVEELQWDLNYLMQLWTAIDGAAR----------DNAAPI 204
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L++ + ++DYF+ + ++++D+ + + +++ + PD RV++Y IPLF
Sbjct: 205 LIYLESSLVIRAIRDYFSPDIGEILIDTDEIHEQAAAFMSVVMPDNLHRVKMYRDDIPLF 264
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+F IE +I S+ V LP+GG++VI+ TEALV+IDVN G+ E+ L N
Sbjct: 265 SRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAIDVNSARST--RGADIEETALRTNQ 322
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR GL
Sbjct: 323 EAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHLDRARVQMGKISRFGL 382
Query: 591 MEITRKR 597
ME++R+R
Sbjct: 383 MELSRQR 389
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FV+ G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSYGEE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|384419491|ref|YP_005628851.1| ribonuclease E [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353462404|gb|AEQ96683.1| ribonuclease E [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 1239
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 213/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIREL----LREGQEIVVQVEKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY V +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++ + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQR 389
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|288799935|ref|ZP_06405394.1| ribonuclease G [Prevotella sp. oral taxon 299 str. F0039]
gi|288333183|gb|EFC71662.1| ribonuclease G [Prevotella sp. oral taxon 299 str. F0039]
Length = 524
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 215/385 (55%), Gaps = 21/385 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK- 277
V +++ +N +D G F +L+ L + N + +V D P
Sbjct: 46 VKKLMPGLNACFVDLGYERDAFLHYLD----LGSQFNSYDKYIKQVQSDRKKLSPFSKAL 101
Query: 278 ---DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ K ++ L V G +V+VQ+VKE + TKGP LT R+ +LI +++
Sbjct: 102 KLPEIKKDSSIQSTLSV--GQEVLVQIVKEPISTKGPRLTGELSFAGRYLVLIPFSNQVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L + W+
Sbjct: 160 VSSKIKSGEERARLKQLIHSIKPKNCGVIVRTVAEGKRVAELDAELKVLNNRWE------ 213
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
AA+ + + P L++ G+T+++++D FN + + V+ + E+ +YL+ IA
Sbjct: 214 --AAILKIQKTQKR-PQLIYEETGRTIALLRDLFNPSFENIYVNDEEVFAEIKNYLELIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
PD V++Y +P+FD FNI ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PDKASIVKMYSGTVPIFDNFNITKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++L+YE + K +
Sbjct: 331 TRSENGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQLLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRA 598
++DR+ + LS+ GLM+ITR+R
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRV 414
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ +VY+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKNLVEYQNESRSASFSVGNVYIAKVKKLMPGLNACFVDLGYERDAFL---HY 70
>gi|383776313|ref|YP_005460879.1| hypothetical protein AMIS_11430 [Actinoplanes missouriensis 431]
gi|381369545|dbj|BAL86363.1| hypothetical protein AMIS_11430 [Actinoplanes missouriensis 431]
Length = 972
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 187/307 (60%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + + G+SRK+ ER RL+ I
Sbjct: 428 LRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPNGNASGISRKLPDTERKRLRDI 487
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L P+G G+ +RT A G S +EL +D++ L + W++I A EG P
Sbjct: 488 LKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQARA----------AEGNAPR 537
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L + +V+D FNE +++VV + Y EV YL+ ++PDL +R+ + F
Sbjct: 538 ALSEEPDLVIRVVRDLFNEDFRELVVQGEQAYAEVEGYLESVSPDLVERLRRHTGVADAF 597
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ I+E+I L ++V LP+GG LVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 598 AEWRIDEQIMKALDRKVFLPSGGHLVIDRTEAMTVVDVNTGK-YTGAGGNLEETVTRNNL 656
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 657 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 716
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 717 VQMTRKR 723
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + Q+ IAVLED LVE + S +VYLG V
Sbjct: 325 ILSESEFLARREAVDRVMVVRQKQDRTQIAVLEDGILVEHYVARATSGTMVGNVYLGKVQ 384
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV++G R +++
Sbjct: 385 NVLPSMEAAFVDVGRGRNAVL 405
>gi|293603990|ref|ZP_06686403.1| ribonuclease E [Achromobacter piechaudii ATCC 43553]
gi|292817594|gb|EFF76662.1| ribonuclease E [Achromobacter piechaudii ATCC 43553]
Length = 1032
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 187/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P+G + RT G ++EELQ DL LL W I A+ + +
Sbjct: 153 TMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQLWTAIDGAAR----------DNSA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALVS+DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFI 152
R + K F
Sbjct: 64 RHGFLPFKEVARSFF 78
>gi|331005268|ref|ZP_08328660.1| Ribonuclease E [gamma proteobacterium IMCC1989]
gi|330420945|gb|EGG95219.1| Ribonuclease E [gamma proteobacterium IMCC1989]
Length = 902
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 183/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
+++GT+VIVQV KE G KG LT + L R +L+ + R G +SR+I G ER L+
Sbjct: 95 LKEGTEVIVQVDKEERGNKGAALTTFISLAGRCMVLMPNNPRGGGISRRIEGEERNELRQ 154
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+++ P+G + +RT G S EELQ DL LL W +I A ++
Sbjct: 155 TLSQIDVPKGMSVIVRTAGIGRSAEELQWDLNYLLQLWGSIKTEADNSN----------A 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P + + + ++DY + +++VD+ TY+ T+++Q + P+ +V+ Y+ P
Sbjct: 205 PHFIFQESNVIIRAIRDYLRPDIGEVIVDNIETYNLATAFVQQVMPNYKSKVKFYEDETP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ IE +I + V LP+GGS+VI+ TEALV+ID+N G E+ L
Sbjct: 265 LFNRYQIESQIETAYEREVHLPSGGSIVIDVTEALVAIDINSARAT--KGGDIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRDIGG+IV+DFIDM N+R V E ++ A+ DR+ V+V +SR
Sbjct: 323 NLEAADEIARQLRLRDIGGLIVIDFIDMHPARNQRAVEERMQNALNMDRARVQVGRISRF 382
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 383 GLLEMSRQR 391
>gi|85713202|ref|ZP_01044231.1| RNase E [Idiomarina baltica OS145]
gi|85692975|gb|EAQ30944.1| RNase E [Idiomarina baltica OS145]
Length = 980
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 202/367 (55%), Gaps = 36/367 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P +K+ PD + KD V+
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIAKTYFPDGYTFNGRPNIKDV-----------VR 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VI 350
+G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ER+ LK +
Sbjct: 93 EGQEVIVQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERSALKEAL 152
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
++ P+ GL +RT G S EEL+ DL L+ W I E A+ + P
Sbjct: 153 SEINVPKEMGLIVRTAGVGKSKEELEWDLNVLIHHWTAISEAAQ----------KRPAPF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ ++DY + ++++DS + + +V ++Q I PD +RV+LY+ +PLF
Sbjct: 203 LIHQESNVIFRALRDYLRRDIGEVLIDSKKVFEQVRDHIQLIRPDFVNRVKLYEGDVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETAFQTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++IAR+LRLRD+GG++V+DFIDM ++R V ++ ++ DR+ ++V+ +SR GL
Sbjct: 321 EAAEEIARQLRLRDVGGLVVIDFIDMTPTRHQREVENRLRDSLAHDRARIQVARISRFGL 380
Query: 591 MEITRKR 597
+E++R+R
Sbjct: 381 LEMSRQR 387
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 61 RHGFLPLKEIAKTY-FP 76
>gi|380513166|ref|ZP_09856573.1| ribonuclease E, partial [Xanthomonas sacchari NCPPB 4393]
Length = 665
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 199/348 (57%), Gaps = 22/348 (6%)
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
GE +GF P K E+ D + G +K T E +++G +V+VQV KE G KG
Sbjct: 59 GERHGFLPLK-EISRDYFQA---GVDHNKATIREL----LREGQEVVVQVDKEERGNKGA 110
Query: 312 TLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAG 369
LT + L R+ +L+ S GVSR+I G +R LK L P+ G+ IRT G
Sbjct: 111 ALTTFISLAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVG 170
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
EELQ DL+ LL WK+I E AALA P L+++ + ++DY
Sbjct: 171 RDAEELQWDLDYLLQVWKSIAE----AALAK------PAPFLIYQESRLIIRALRDYLRA 220
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
+ +++VD+ Y + ++Q + P +++ Y IPLF++F IE +I + V L
Sbjct: 221 DIGEILVDTEEMYGDAKEFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRL 280
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549
P+GGS+V++QTEAL ++DVN GS E NL AA+++AR+LRLRD+GG++
Sbjct: 281 PSGGSIVVDQTEALTAVDVNSSRAT--KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLV 338
Query: 550 VVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
V+DFIDMA + ++R V ++ A++ DR+ V++ +SR GL+E++R+R
Sbjct: 339 VIDFIDMASNKHQREVENRLQNALKYDRARVQIGRISRFGLLEMSRQR 386
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV G
Sbjct: 1 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYGGE 60
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 61 RHGFLPLK 68
>gi|303250946|ref|ZP_07337135.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|302650163|gb|EFL80330.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 995
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPADYVFNGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 142 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ ++ S +SR GL+E++R+R
Sbjct: 370 RARIQFSRISRFGLLEMSRQR 390
>gi|308535182|ref|YP_002137523.2| ribonuclease, Rne/Rng family [Geobacter bemidjiensis Bem]
gi|308052527|gb|ACH37727.2| ribonuclease, Rne/Rng family [Geobacter bemidjiensis Bem]
Length = 919
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 198/313 (63%), Gaps = 22/313 (7%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLK- 348
+++G ++IVQV K KG LT Y L R+ +L+ D G+SRK+ G ER +LK
Sbjct: 100 LRRGQELIVQVEKGERDNKGSALTTYVSLPGRYMVLMPGSDSAGISRKVEGEGERKKLKE 159
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+IA+ PEG+G IRT A G + EELQKDL+ L++T++ I +S LA ++GA
Sbjct: 160 IIAEMAIPEGYGYIIRTEAMGRTREELQKDLDNLIATYQGI----RSKGLA----MKGAG 211
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
I A+ + ++DYF+ + +++VDS Y++V L++I P V+++ ++ P
Sbjct: 212 MIYQESAL--IIRTIRDYFSADIDEVLVDSKDVYNDVRDCLKEIDPAFEKLVKMHQEKRP 269
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD- 527
+F ++ +EE+I+ + K+VPL +GGS+ IE TEALVSIDVN G S+ EK + D
Sbjct: 270 IFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEALVSIDVNSGK------STGEKGVEDT 323
Query: 528 ---VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
NL AA++ AR+LRLRD+GG+IV+DFIDM D + V + +K A++ D++ V VS
Sbjct: 324 AFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNSEVEKTLKTALKADKARVNVSR 383
Query: 585 LSRHGLMEITRKR 597
+S GL+E++R+R
Sbjct: 384 ISEFGLLEMSRQR 396
>gi|310286793|ref|YP_003938051.1| ribonuclease, Rne/Rng family [Bifidobacterium bifidum S17]
gi|309250729|gb|ADO52477.1| ribonuclease, Rne/Rng family [Bifidobacterium bifidum S17]
Length = 960
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 191/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 568 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 627
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G E + KDLE L+ W+ I +AK +E G
Sbjct: 628 GIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 680
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +++V+ + Y + YL +APDL +++ +D
Sbjct: 681 PKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEYLDTMAPDLKEKLSKWDPSEH 740
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 741 QGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 799
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL AA++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 800 VTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 859
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 860 VTSLGLVQMTRKR 872
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG SR ++
Sbjct: 494 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQSRNGVL 547
>gi|390936149|ref|YP_006393708.1| ribonuclease G [Bifidobacterium bifidum BGN4]
gi|389889762|gb|AFL03829.1| ribonuclease G [Bifidobacterium bifidum BGN4]
Length = 960
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 191/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 568 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 627
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G E + KDLE L+ W+ I +AK +E G
Sbjct: 628 GIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 680
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +++V+ + Y + YL +APDL +++ +D
Sbjct: 681 PKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEYLDTMAPDLKEKLSKWDPSEH 740
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 741 QGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 799
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL AA++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 800 VTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 859
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 860 VTSLGLVQMTRKR 872
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG SR ++
Sbjct: 494 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQSRNGVL 547
>gi|451942036|ref|YP_007462673.1| ribonuclease E [Bartonella vinsonii subsp. berkhoffii str. Winnie]
gi|451901423|gb|AGF75885.1| ribonuclease E [Bartonella vinsonii subsp. berkhoffii str. Winnie]
Length = 876
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 174/594 (29%), Positives = 282/594 (47%), Gaps = 54/594 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A EE A +N + E++
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL--------ALLEEEEKAAVGENYA-----ENLP 107
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
E ++ + DE + DV + + +DD E E F H D E
Sbjct: 108 EETNKSKKRSRKTKKDERNSTIAADVEHDMTS-EAITLDDTE-----ETFNASVSHDDIE 161
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
G + E+P T K K +++ ++VQV+KE G KG L
Sbjct: 162 MVGAEDVREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAAL 211
Query: 314 TAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT A
Sbjct: 212 TTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRTAGANR 271
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L W + ++ L + P L+H ++D +N+K
Sbjct: 272 TKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLIHEESNLIKRSIRDLYNKK 321
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V L
Sbjct: 322 INEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLHPQVSLK 381
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 382 SGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRDLAGLIV 439
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR---AMMEQKADP- 606
+DFIDM ++ N RLV +++K+ ++ DR+ ++V +S GL+E++R+R +++E P
Sbjct: 440 IDFIDMLEERNVRLVEKKLKECLKSDRARIQVGHISHFGLLEMSRQRIRVSVLESTTQPC 499
Query: 607 ------ENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGF 654
N +S L V + YL + + V + A +L R
Sbjct: 500 PHCAGTGNVRSESSIALHVMRSIEEYLLRNPQHNITVRTPVTTALYVLNHKRNI 553
>gi|111221361|ref|YP_712155.1| ribonuclease E-like protein [Frankia alni ACN14a]
gi|111148893|emb|CAJ60572.1| Ribonuclease E homolog [Frankia alni ACN14a]
Length = 1373
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 188/319 (58%), Gaps = 14/319 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 847 LKSGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPDGQNAGISRKLPDTERARLKSI 906
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EL++D+E L + W++I AK A + P
Sbjct: 907 LKKITPEDGGVIVRTAAEGASEAELERDIERLAAQWEDIQRRAKKA----------SAPS 956
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +++D FNE ++VV + Y+ +APDL R+ Y +F
Sbjct: 957 LLYGEPDLVVRVIRDIFNEDFTELVVQGSGEAATIEEYIDAVAPDLRPRIRRYTGSGDVF 1016
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ ++E++ L ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL
Sbjct: 1017 VDYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FTGKGGNLEETVTKNNL 1075
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1076 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 1135
Query: 591 MEITRKR---AMMEQKADP 606
+++TRKR ++E ++P
Sbjct: 1136 VQMTRKRVGQGLLEAYSEP 1154
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED LVE + S +VYLG V ++ +M AFV+IG R +++
Sbjct: 771 QIAVLEDSVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDIGKGRNAVL 824
>gi|319898906|ref|YP_004158999.1| ribonuclease E [Bartonella clarridgeiae 73]
gi|319402870|emb|CBI76421.1| ribonuclease E [Bartonella clarridgeiae 73]
Length = 804
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 174/594 (29%), Positives = 281/594 (47%), Gaps = 57/594 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ D K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHDNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R E EE AV ++ E +
Sbjct: 61 YGGNRHGFLTFAEIHPDYYQIPVADRLALLE---------EEKAVINESYGDDPIEETIQ 111
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
S + + N D ++ +SE + I DD E + DF D + G
Sbjct: 112 NKKSLRKTKKDKSNSFMATDIENDIISETI------IADDAE---EIPDFSNDDIEMVGA 162
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
+ E+P T K K +++ +++QV+KE G KG L
Sbjct: 163 EDAL----EELP----------TYRRKQGCQYKIQEVIKRRQILLIQVIKEERGNKGAAL 208
Query: 314 TAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT A
Sbjct: 209 TTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRTAGANR 268
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L+ W I AL ++ P L+H ++D +++
Sbjct: 269 TKAEIKRDYEYLMRLWDTIR------ALT----LKSTAPCLIHEESNLIKRSIRDLYSKD 318
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F +IE +++ ML +V L
Sbjct: 319 INEILVAGDQGYREAKDFMRMLMPSHAKVVQPYRNPIPIFAHNDIETQLDKMLHPQVSLK 378
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+IDVN G H S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 379 SGGYLVINQTEALVAIDVNSGRSTKEH--SVEKTALQTNLEAAEEIARQLRLRDLAGLIV 436
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR---AMMEQKADP- 606
+DFIDM + N +LV +++K ++ DR+ ++V +S GLME++R+R +++E P
Sbjct: 437 IDFIDMLETRNIKLVEKKLKDCLKNDRARIQVGHISHFGLMEMSRQRIRVSVLESTTQPC 496
Query: 607 ------ENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGF 654
N +S L V + YL + + V +S A +L R
Sbjct: 497 PHCAGTGNIRSESSIALHVMRSIEEYLLRNSQYNIIVRTSVATALYVLNHKRNI 550
>gi|159039391|ref|YP_001538644.1| ribonuclease [Salinispora arenicola CNS-205]
gi|157918226|gb|ABV99653.1| ribonuclease, Rne/Rng family [Salinispora arenicola CNS-205]
Length = 1058
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 188/307 (61%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + G+SRK+ ER RL+
Sbjct: 598 LKSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPGGNTSGISRKLPDNERRRLRDA 657
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L PEG G+ +RT A G S +EL +D++ L + W++I A +G P+
Sbjct: 658 LKKLVPEGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQAKAG----------KGGAPV 707
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +V+D FNE +++V++ Y V SYL ++PDL R+ + + +F
Sbjct: 708 LLYEEPDLVIRVVRDLFNEDFRELVIEGEGAYDMVESYLSHVSPDLVARLRRHVGTVDVF 767
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ I+E+I L ++V LP+GG LVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 768 TEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGK-YTGAGGNLEETVTRNNL 826
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 827 EAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 886
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 887 VQMTRKR 893
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR IAVLED LVE + S +VYLG V
Sbjct: 495 ILSEAEFLARREAVDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSTTMAGNVYLGKVQ 554
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 555 NVLPSMEAAFVDIGRGRNAVL 575
>gi|384565249|ref|ZP_10012353.1| ribonuclease, Rne/Rng family [Saccharomonospora glauca K62]
gi|384521103|gb|EIE98298.1| ribonuclease, Rne/Rng family [Saccharomonospora glauca K62]
Length = 1019
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 184/304 (60%), Gaps = 6/304 (1%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT L RF + + S G+SRK+ ER RLK I K
Sbjct: 509 GDHVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPSGGATGISRKLPENERRRLKDILKR 568
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P G+ IRT + G S EEL +D+ L + W+ I E A +A+ G +G P LL+
Sbjct: 569 IVPADAGVIIRTASEGISEEELARDVRRLEAQWQVIKEKADAAS-----GKKGGAPALLY 623
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ +V+D F E K+ + + + +Y++ +APDL DRV+ Y LF ++
Sbjct: 624 EEPDLLVKVVRDLFTEDFSKLEIQGDTAWETIHAYVEHVAPDLLDRVKRYVGTGDLFAEY 683
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I+E++ L ++V LP+GG LVI++TEA+ IDVN G G G + E+ + NL +A
Sbjct: 684 RIDEQLMKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTRNNLESA 742
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 743 EEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQM 802
Query: 594 TRKR 597
TRKR
Sbjct: 803 TRKR 806
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVEL 101
L++ Q+ +D + ++S+ F++ + ++ +R I VLED LVE
Sbjct: 383 LEAKRQRRRDGREAGRRRAPILSESEFLARRESVERTMVVAERGDSTQIGVLEDGVLVEH 442
Query: 102 LLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ S +VYLG V ++P+M AF++IG R +++
Sbjct: 443 FVTSAGSGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVL 483
>gi|317123011|ref|YP_004103014.1| RNAse G [Thermaerobacter marianensis DSM 12885]
gi|315592991|gb|ADU52287.1| RNAse G [Thermaerobacter marianensis DSM 12885]
Length = 565
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 194/355 (54%), Gaps = 20/355 (5%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E N F VP D +H + G ++IVQ+VKE G KG
Sbjct: 63 ERNAFLYVADAVPRGEDAEDDDLPDDLRHAAITDL---LHPGQEIIVQIVKEPTGNKGAR 119
Query: 313 LTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHS 371
+T + L R +L+ D +GVSR+I ER RLK +A++LQP G GL +RT A G S
Sbjct: 120 VTRHLTLPGRLLVLMPGVDYVGVSRRIHDEKERQRLKQLAQSLQPPGAGLIVRTAAEGRS 179
Query: 372 LEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKV 431
EL+ D+E L W +I A+ P+LL+R +G +V+D +V
Sbjct: 180 EAELRGDVEYLTRLWADIQRRARRER----------APVLLYRDLGLVFRVVRDMLTPEV 229
Query: 432 KKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-IPLFDKFNIEEEINNMLSKRVPLP 490
++ +D P Y + + A L DRV LY R LF+++ I EEI L +RV L
Sbjct: 230 DEVWIDDPTEYRRMLDLMAAFASPLRDRVHLYQNREAGLFEQYGINEEIERALKRRVWLK 289
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI+QTEAL +IDVN G F + + N+ AA +IAR+LRLRDIGGIIV
Sbjct: 290 SGGYLVIDQTEALTAIDVNTGK--FVGSKNLADTVFRTNMEAAAEIARQLRLRDIGGIIV 347
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRK---RAMMEQ 602
+DFIDM + S+++ V +E+++ + RD + V ++ GL+E+TRK R+++EQ
Sbjct: 348 IDFIDMEEPSHRQRVVQELERHLARDHTKATVLGITSLGLVEMTRKKGRRSLLEQ 402
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDI 144
R+AVLED++LVE+ E + +VY G V ++P M AFVNIG R + + +
Sbjct: 15 RVAVLEDDRLVEIYHERPSNQRVAGNVYKGKVENVLPGMQAAFVNIGLERNAFLYV 70
>gi|307246358|ref|ZP_07528435.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307253093|ref|ZP_07534975.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307255344|ref|ZP_07537155.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307257513|ref|ZP_07539278.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|307259794|ref|ZP_07541513.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|307261925|ref|ZP_07543584.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306852734|gb|EFM84962.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306859428|gb|EFM91459.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306861695|gb|EFM93678.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306863983|gb|EFM95901.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306866133|gb|EFM98002.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306868376|gb|EFN00194.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 992
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 37 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPADYVFNGRPNIKD 89
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 90 I-----------IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 138
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 139 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 198
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 199 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDF 248
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 249 INRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 306
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 307 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 366
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ ++ S +SR GL+E++R+R
Sbjct: 367 RARIQFSRISRFGLLEMSRQR 387
>gi|29346910|ref|NP_810413.1| ribonuclease G [Bacteroides thetaiotaomicron VPI-5482]
gi|298386443|ref|ZP_06995999.1| ribonuclease G [Bacteroides sp. 1_1_14]
gi|383121113|ref|ZP_09941829.1| rne/Rng family ribonuclease [Bacteroides sp. 1_1_6]
gi|29338808|gb|AAO76607.1| Ribonuclease G [Bacteroides thetaiotaomicron VPI-5482]
gi|251838150|gb|EES66238.1| rne/Rng family ribonuclease [Bacteroides sp. 1_1_6]
gi|298260820|gb|EFI03688.1| ribonuclease G [Bacteroides sp. 1_1_14]
Length = 524
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 187/306 (61%), Gaps = 11/306 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ L+ W++ M + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLIKHWEDAMAKVQKAT---------KYPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRA 598
ITR+R
Sbjct: 409 ITRQRV 414
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKFVKQTLSDKKKLNSISKATLLPD---LDKDGTVANTLKVGQ 120
>gi|395792398|ref|ZP_10471832.1| rne/Rng family ribonuclease [Bartonella vinsonii subsp. arupensis
Pm136co]
gi|395432576|gb|EJF98555.1| rne/Rng family ribonuclease [Bartonella vinsonii subsp. arupensis
Pm136co]
Length = 876
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 175/594 (29%), Positives = 282/594 (47%), Gaps = 54/594 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A EE A +N TE +
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL--------ALLEEEEKAAVGEN-----YTESLP 107
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
E +++ + DE + DV + + I+DD E E F H D E
Sbjct: 108 EETNKNKKRSRKTKKDERNSIIAADVENDMTS-EAIILDDTE-----EVFNANVSHDDIE 161
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
G + E+P T K K +++ ++VQV+KE G KG L
Sbjct: 162 MVGAEDVREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAAL 211
Query: 314 TAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT A
Sbjct: 212 TTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRTAGANR 271
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L W + ++ L + P L+H ++D +N+
Sbjct: 272 TKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLVHEESNLIKRSIRDLYNKN 321
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V L
Sbjct: 322 INEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLHPQVSLK 381
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 382 SGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRDLAGLIV 439
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR---AMMEQKADP- 606
+DFIDM ++ N RLV +++K+ ++ DR+ ++V +S GL+E++R+R +++E P
Sbjct: 440 IDFIDMLEERNVRLVEKKLKECLKSDRARIQVGHISHFGLLEMSRQRIRVSVLESTTQPC 499
Query: 607 ------ENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGF 654
N +S L V + YL + + V + A +L R
Sbjct: 500 PHCAGTGNVRSESSIALHVMRSIEEYLLRNPQHNITVRTPVTTALYILNHKRNI 553
>gi|299140822|ref|ZP_07033960.1| ribonuclease G [Prevotella oris C735]
gi|298577788|gb|EFI49656.1| ribonuclease G [Prevotella oris C735]
Length = 524
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 212/385 (55%), Gaps = 21/385 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP----Q 274
V +++ +N +D G F +L+ L + N + +V D +P Q
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYLKQVNSDRKRLYPFSKAQ 101
Query: 275 GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 102 RLPDLKKDGSVQQVLSV--GQEVLVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +++ L W++ +
Sbjct: 160 VSSKIKSGEERARLKQLIYSIKPKNCGVIVRTVAEGKRVAELDTEMKVLTKRWEDAILKT 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ + P L+ G+ +++++D FN + + V++ Y+EV YL IA
Sbjct: 220 QK---------QQKRPQLVFEETGRAIAMLRDLFNPSFENIYVNNEEVYNEVKHYLTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+ Y ++P+FD FN+ ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PEKASIVKHYTGKVPIFDNFNVTKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 SKSENGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRA 598
++DR+ + LS+ GLM+ITR+R
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRV 414
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE EP +++ ++Y V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKNLVEYQNEPRQASFSVGNIYAAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|295677200|ref|YP_003605724.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1002]
gi|295437043|gb|ADG16213.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1002]
Length = 1066
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 209/377 (55%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I ++S
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS----- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G G P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 200 --GTAGQ-PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVGKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|225010185|ref|ZP_03700657.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-3C]
gi|225005664|gb|EEG43614.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-3C]
Length = 516
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 192/320 (60%), Gaps = 12/320 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
++ ++VQ+VKE + TKGP +++ + R+ +++ DR+ VS+KI + E+ RLK
Sbjct: 117 IKANQSILVQIVKEPISTKGPRISSELSIAGRYLVMVPFSDRVSVSQKIESKEEKDRLKR 176
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ K+++P+GFG+ IRTVA G + EL +DL+ LL+ W + + A + VE
Sbjct: 177 LVKSIKPKGFGVIIRTVAEGKKVAELDRDLQNLLNKWTVMCKKLHKAPHPSKVLVE---- 232
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L+RA SI++D FN+ + VD Y +V Y+Q+IAP+ V+LY+ P+
Sbjct: 233 --LNRAS----SILRDVFNDSFSGIHVDDETLYTQVKDYVQEIAPEKESIVKLYEATEPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+KF IE +I K + G LVIE TEAL IDVN G+ ++E LDVN
Sbjct: 287 FEKFGIERQIKTSFGKTATMSKGAYLVIEHTEALHVIDVNSGNRS-NKAKNQEDTALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L+AA +IAR+LRLRD+GGIIVVDFIDMA +++ +++ + + ++ DR+ K+ S+ G
Sbjct: 346 LSAATEIARQLRLRDMGGIIVVDFIDMAKGDHRKKLFDHLSEEMKEDRAKHKILPPSKFG 405
Query: 590 LMEITRKRAMMEQKADPENP 609
L++ITR+R E P
Sbjct: 406 LIQITRQRVRPEMNIKTTEP 425
>gi|312882471|ref|ZP_07742212.1| ribonuclease E [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369871|gb|EFP97382.1| ribonuclease E [Vibrio caribbenthicus ATCC BAA-2122]
Length = 997
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 190/338 (56%), Gaps = 28/338 (8%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK
Sbjct: 96 EGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
TL+ P+ GL +RT G S EEL+ DL LL+ W I + + S P
Sbjct: 156 NTLELPQEMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NTAPF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DS + ++++ + PD RV +D +PLF
Sbjct: 206 LIHQESNVIVRAIRDYLRRDIGEIIIDSTTIHERALNHIRLVRPDFESRVHKHDGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
K+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL
Sbjct: 266 SKYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++IAR+LRLRD+GG++V+DFIDM ++R V ++ +V DR+ V++ +SR GL
Sbjct: 324 EAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRLDRARVQIGRISRFGL 383
Query: 591 MEITRKRAMMEQKADPENPKSWPRFILRVDHHMCNYLT 628
+E++R+R +P + HH+C T
Sbjct: 384 LEMSRQRL---------SPS-----LAEASHHICPRCT 407
>gi|281425614|ref|ZP_06256527.1| ribonuclease, Rne/Rng family [Prevotella oris F0302]
gi|281400201|gb|EFB31032.1| ribonuclease, Rne/Rng family [Prevotella oris F0302]
Length = 524
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 212/385 (55%), Gaps = 21/385 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP----Q 274
V +++ +N +D G F +L+ L + N + +V D +P Q
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYLKQVNSDRKRLYPFSKAQ 101
Query: 275 GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 102 RLPDLKKDGSVQQVLSV--GQEVLVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +++ L W++ +
Sbjct: 160 VSSKIKSGEERARLKQLIYSIKPKNCGVIVRTVAEGKRVAELDTEMKVLTKRWEDAILKT 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ + P L+ G+ +++++D FN + + V++ Y+EV YL IA
Sbjct: 220 QK---------QQKRPQLVFEETGRAIAMLRDLFNPSFENIYVNNEEVYNEVKHYLTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+ Y ++P+FD FN+ ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PEKASIVKHYTGKVPIFDNFNVTKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 SKSENGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRA 598
++DR+ + LS+ GLM+ITR+R
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRV 414
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE EP +++ ++Y V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKNLVEYQNEPRQASFSVGNIYAAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|187924898|ref|YP_001896540.1| Rne/Rng family ribonuclease [Burkholderia phytofirmans PsJN]
gi|187716092|gb|ACD17316.1| ribonuclease, Rne/Rng family [Burkholderia phytofirmans PsJN]
Length = 1097
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 29/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I AA
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKR 597
++ ++SR GLME++R+R
Sbjct: 375 QMGKISRFGLMELSRQR 391
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|153870707|ref|ZP_02000051.1| ribonuclease, Rne/Rng family [Beggiatoa sp. PS]
gi|152072828|gb|EDN69950.1| ribonuclease, Rne/Rng family [Beggiatoa sp. PS]
Length = 598
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 182/309 (58%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +I+Q+ KE G KG LT + L R+ +L+ + R G VSR+I G +R+ +
Sbjct: 117 LKEGQDIIIQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGEDRSEARE 176
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
TL P G GL +RT + EELQ DLE LL WK I A+ +
Sbjct: 177 TLSTLDIPTGMGLILRTAGVNKTAEELQWDLEYLLQLWKAIESSAQ----------QQPA 226
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DY E + ++++D+ Y E +++Q + P ++V+LY ++P
Sbjct: 227 PFLIYQESNIIIRAIRDYLREDISEILIDNQEIYDEAYAFMQQVMPQHINKVKLYQHKVP 286
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP GG++V++ TEAL+SID+N G E+ L
Sbjct: 287 LFTRYQIESQIETAFQREVKLPLGGAIVLDHTEALLSIDINSARAT--KGVDIEETALTT 344
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL A +IAR+LRLRD+GG++V+DFIDM N+R V +K+A++ DR+ V+V +SR
Sbjct: 345 NLEAVDEIARQLRLRDLGGLVVIDFIDMLSHKNQREVESRIKEALKMDRARVQVGRISRF 404
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 405 GLLEMSRQR 413
>gi|347537834|ref|YP_004845259.1| ribonuclease G [Flavobacterium branchiophilum FL-15]
gi|345530992|emb|CCB71022.1| Ribonuclease G [Flavobacterium branchiophilum FL-15]
Length = 517
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 134/375 (35%), Positives = 215/375 (57%), Gaps = 27/375 (7%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKV 349
+ ++VQVVKE + TKGP +++ L R+ +L+ DR+ VS+KI E+ RLK
Sbjct: 119 INANQSILVQVVKEPISTKGPRISSELSLAGRYVVLVPFSDRVSVSQKIEAKSEKDRLKK 178
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+GFG+ +RTVA G + EL+KDL+ LLS W + + +A + V G
Sbjct: 179 LVQSIKPKGFGVIVRTVAEGKNTAELEKDLQNLLSRWTAMCKKLPTAHHPSK--VLGE-- 234
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD-KRIP 468
L+RA SI++D FN+ + +D Y + Y+Q IAP V+ Y K P
Sbjct: 235 --LNRAS----SILRDVFNDSFSGIHIDDEELYQQTKEYVQKIAPSKQSMVKFYQSKDTP 288
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F+KFNIE +I K V + G L+IE TEAL IDVN G+ S++E ++V
Sbjct: 289 IFEKFNIERQIKTSFGKTVSMSKGAYLIIEHTEALHVIDVNSGNRS-NKASNQEDTAMEV 347
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AA +IAR+LRLRD+GGIIV+DFIDM D N++++++ +++ + D++ K+ S+
Sbjct: 348 NMIAAAEIARQLRLRDMGGIIVIDFIDMTDVENRKVLFDFLREEMSDDKAKHKILPPSKF 407
Query: 589 GLMEITRKRAMME-----QKADPENPKS---WPRFIL-RVDHHMCNYLTSGKRTRLAVLS 639
GL++ITR+R E ++ DP N + P I+ ++ + NYL S L
Sbjct: 408 GLVQITRQRVRPEVNIKTREEDPNNENAEIEAPIVIIDKITSDLENYLKSYNNVVL---- 463
Query: 640 SSLKAWILLKVARGF 654
+ ++ +A+GF
Sbjct: 464 -NTHPFVAAYLAKGF 477
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
A+L+D KL+EL E SN Q +++ + K V + AFVN+G + + + HY +
Sbjct: 19 FALLKDGKLIELHKEQETSNFQVGDIFIAKIRKPVAGLNAAFVNVGYEKDAFL---HYHD 75
>gi|307250703|ref|ZP_07532639.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306857261|gb|EFM89381.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 992
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 37 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPADYVFNGRPNIKD 89
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 90 I-----------IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 138
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 139 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 198
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 199 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDF 248
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 249 INRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 306
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 307 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 366
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ ++ S +SR GL+E++R+R
Sbjct: 367 RARIQFSRISRFGLLEMSRQR 387
>gi|307248485|ref|ZP_07530504.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306855004|gb|EFM87188.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
Length = 992
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 37 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPADYVFNGRPNIKD 89
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 90 I-----------IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 138
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 139 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 198
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 199 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDF 248
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 249 INRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 306
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 307 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 366
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ ++ S +SR GL+E++R+R
Sbjct: 367 RARIQFSRISRFGLLEMSRQR 387
>gi|441509905|ref|ZP_20991817.1| putative ribonuclease [Gordonia aichiensis NBRC 108223]
gi|441445920|dbj|GAC49778.1| putative ribonuclease [Gordonia aichiensis NBRC 108223]
Length = 1105
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 190/312 (60%), Gaps = 13/312 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT L R+ + + G+SRK+ VER RLK I
Sbjct: 601 LKPGDPVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGTSTGISRKLPDVERKRLKQI 660
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV-P 409
L P+ G+ IRT + G S E+L D+E L WK+I E A + +G+V P
Sbjct: 661 LAKLVPDDAGVIIRTASEGVSAEDLAADIERLEKQWKSIDE-------AFGKANKGSVSP 713
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDK-RIP 468
L+ + +V+D FNE KK+VV+ + ++ V Y+ +APDL DRVE +++ R
Sbjct: 714 RPLYEEPDLLVRVVRDLFNEDFKKLVVEGDKAWNLVEGYVSSVAPDLMDRVERFERPRAD 773
Query: 469 LFDKF---NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAI 525
D F I+E++ L ++V LP+GG+L+IE TEA+ +DVN G G G + E+ +
Sbjct: 774 APDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGK-FTGSGGNLEETV 832
Query: 526 LDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSEL 585
NL AA++I R++RLRDIGG+I+VDFIDM +SN+ LV + +A+ RDR+ +VSE+
Sbjct: 833 TRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALSRDRTRHQVSEV 892
Query: 586 SRHGLMEITRKR 597
+ GL+++TRKR
Sbjct: 893 TSLGLVQMTRKR 904
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
++AVLED LVE + S+ ++Y+G V ++P M AFV+IG R ++
Sbjct: 525 QVAVLEDGVLVEHFVTTETSSSMVGNIYIGRVQNVLPGMEAAFVDIGRGRNGVL 578
>gi|261880408|ref|ZP_06006835.1| rne/Rng family ribonuclease [Prevotella bergensis DSM 17361]
gi|270332953|gb|EFA43739.1| rne/Rng family ribonuclease [Prevotella bergensis DSM 17361]
Length = 524
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 213/385 (55%), Gaps = 21/385 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK- 277
V +++ +N +D G F +L+ L + N + +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYLKQVQSDRKKLYPFSKAS 101
Query: 278 ---DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + LQV G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 102 RLPDLKRDGSVQQTLQV--GQEVLVQIVKEPISTKGPRLTCELSFAGRFLVLIPFGDKVN 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + ++++P+G + +RTVA G + EL +L+ L W N +
Sbjct: 160 VSTKIKSGEERARLKQLIRSIKPKGCSVIVRTVAEGKRVAELDVELKVLTKRWLNAIVKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ D P L++ G+T+++++D FN + + V+ + EV Y+ IA
Sbjct: 220 QKTQ---DR------PQLVYEEEGRTVAMLRDLFNASYENIFVNEDDIFKEVKDYISLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P + V+ Y ++P+FD FN+ ++I + K V +G L+IE TEA+ +DVN G+
Sbjct: 271 PKKVNIVKRYKGKVPIFDNFNVTKQIKSSFGKTVNYAHGAYLIIEHTEAMHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ +E L+ NL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + KA+
Sbjct: 331 S-KNEKGQEGTALETNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKAM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRA 598
++DR+ + LS+ GLM+ITR+R
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRV 414
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP +N +VY+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQNEPRSANFSVGNVYIAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|421733367|ref|ZP_16172474.1| ribonuclease G [Bifidobacterium bifidum LMG 13195]
gi|407078712|gb|EKE51511.1| ribonuclease G [Bifidobacterium bifidum LMG 13195]
Length = 957
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 191/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 565 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 624
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G E + KDLE L+ W+ I +AK +E G
Sbjct: 625 GIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 677
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +++V+ + Y + YL +APDL +++ +D
Sbjct: 678 PKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEYLDTMAPDLKEKLSKWDPSEH 737
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 738 QGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 796
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL AA++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 797 VTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 856
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 857 VTSLGLVQMTRKR 869
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
S + + +F++ +N + +R I+V+ED LVE + ++ ++YLG V
Sbjct: 463 SQLVEQDFLARREHVNRLMVVRERGHHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRV 522
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG SR ++
Sbjct: 523 QNVLPSMEAAFVDIGQSRNGVL 544
>gi|359797503|ref|ZP_09300087.1| ribonuclease E [Achromobacter arsenitoxydans SY8]
gi|359364614|gb|EHK66327.1| ribonuclease E [Achromobacter arsenitoxydans SY8]
Length = 1017
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 187/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P+G + RT G ++EELQ DL LL W I A+ + +
Sbjct: 153 TMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQLWTAIDGAAR----------DNSA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALVS+DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFI 152
R + K F
Sbjct: 64 RHGFLPFKEVARSFF 78
>gi|294625340|ref|ZP_06703976.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292600358|gb|EFF44459.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 631
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 212/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIREL----LREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY V +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++ + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 359 NRLQNALKYDRARVQLGRISRFGLMEMSRQR 389
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|46143575|ref|ZP_00134935.2| COG1530: Ribonucleases G and E [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 992
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 37 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPADYVFNGRPNIKD 89
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 90 I-----------IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 138
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 139 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 198
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 199 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDF 248
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 249 INRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 306
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 307 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 366
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ ++ S +SR GL+E++R+R
Sbjct: 367 RARIQFSRISRFGLLEMSRQR 387
>gi|33597842|ref|NP_885485.1| ribonuclease E [Bordetella parapertussis 12822]
gi|33574271|emb|CAE38603.1| ribonuclease E [Bordetella parapertussis]
Length = 1041
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 188/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDRKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|384097353|ref|ZP_09998474.1| ribonuclease G [Imtechella halotolerans K1]
gi|383837321|gb|EID76721.1| ribonuclease G [Imtechella halotolerans K1]
Length = 514
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 191/322 (59%), Gaps = 14/322 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
V+ ++VQ+VKE + TKGP +++ + R+ +L+ DRI +S+KI E+ RLK
Sbjct: 116 VKANQSILVQIVKEPISTKGPRISSELSIAGRYLVLVPFSDRISISQKIESRDEKDRLKR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+GFG+ +RTVA G + EL KDL+ L++ W L + + P
Sbjct: 176 LVQSIRPKGFGVIVRTVAEGKKVAELDKDLQNLVNRW----------TLMCKKIYKAEHP 225
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
+ M + SI++D FN+ + +D Y +V Y+ +IAP+ V+LY IP+
Sbjct: 226 SKVLSEMNRAASILRDIFNDTFTGIHIDDETLYLQVKDYVHEIAPEKESIVKLYQSSIPI 285
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+KF IE +I + V + G LV+E TEAL IDVN G+ ++E L+VN
Sbjct: 286 FEKFGIERQIKTSFGRTVSMSKGAYLVVEHTEALHVIDVNSGNRS-NKAKTQEDTALEVN 344
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA +IAR+LRLRD+GGIIVVDFIDM D N++ +++ ++ ++ DR+ K+ S+ G
Sbjct: 345 LIAATEIARQLRLRDMGGIIVVDFIDMNDVENRKTLFDHLRDEMKEDRAKHKILPPSKFG 404
Query: 590 LMEITRKRAMMEQKADP--ENP 609
L++ITR+R E+ + ENP
Sbjct: 405 LIQITRQRVRPERNINTREENP 426
>gi|402493043|ref|ZP_10839799.1| ribonuclease G [Aquimarina agarilytica ZC1]
Length = 513
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 191/316 (60%), Gaps = 14/316 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKIT-GVERTRLKVIAKTLQ 355
V+VQ+VKE + TKGP L++ + R+ +L+ +R+ VS+KIT E+ RLK + K+++
Sbjct: 121 VLVQIVKEPISTKGPRLSSEISIAGRYIVLVPFSNRVSVSQKITSNEEKDRLKRLVKSIK 180
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+GFG+ IRTVA G + EL KDLE L+ WK++ S A+ P +
Sbjct: 181 PKGFGVIIRTVAEGKKVAELDKDLENLVERWKSMC----SKLYKAEH------PSKVLGE 230
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
M + SI++D FN+ + VD Y++VT YL +IAP V+ Y + P+F++F I
Sbjct: 231 MNRASSILRDVFNDTFTGIHVDEEELYNQVTDYLTEIAPKKTSIVKHYKSKEPIFERFGI 290
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
E +I + V + G LVIE TEAL IDVN G+ ++E L+VNL +AK+
Sbjct: 291 ERQIKTSFGQSVSMSKGAYLVIEHTEALHVIDVNSGNRS-NKARNQEDTALEVNLISAKE 349
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
IAR+LRLRD+GGIIVVDFIDM N+R +++ +++ + D++ K+ S+ GL++ITR
Sbjct: 350 IARQLRLRDMGGIIVVDFIDMGKSENRRKLFDCLREEMLDDKAKHKILPPSKFGLVQITR 409
Query: 596 KRAMMEQ--KADPENP 609
+R E K +NP
Sbjct: 410 QRVRPETNIKTREKNP 425
>gi|365825113|ref|ZP_09367071.1| hypothetical protein HMPREF0045_00707 [Actinomyces graevenitzii
C83]
gi|365258488|gb|EHM88494.1| hypothetical protein HMPREF0045_00707 [Actinomyces graevenitzii
C83]
Length = 917
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 189/307 (61%), Gaps = 6/307 (1%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R +L+ G+SRK+ ER RLK I
Sbjct: 319 LKSGDTVVVQVTKDPIGHKGARLTSQITLAGRHLVLVPGGSMTGISRKLPDTERGRLKRI 378
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G G+ +RT A G + E+L D++ L + W+ I + + A + G G P+
Sbjct: 379 LKQVVPAGHGVIVRTAAEGATEEQLAADVQRLTAQWEQIQKKVE----AVNRG-SGKAPL 433
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL L +V+D F+E +K++V + + ++ Y+ +++P+L DR+E + + +F
Sbjct: 434 LLKGEPELALRVVRDVFSEDFRKLIVSGTKAWQTISEYVTELSPELADRLEHWVSPVDVF 493
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ ++E++ ++V LP+GG+LVI++TEA+ IDVN G G G + E+ + NL
Sbjct: 494 ATYRVDEQLAKAFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR-FTGAGGTLEETVTRNNL 552
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGG++V+DF+DM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 553 EAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLIECLGRDRTRHQVTEVTSLGL 612
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 613 VQMTRKR 619
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ +IAVLED+ LVE + +VY+G V ++P+M AFV++G R +++
Sbjct: 241 LNQIAVLEDDMLVEHYVARHTQTSMVGNVYIGRVQNVLPSMEAAFVDLGKGRNAVL 296
>gi|328952216|ref|YP_004369550.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109]
gi|328452540|gb|AEB08369.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109]
Length = 515
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 211/377 (55%), Gaps = 30/377 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I + EP +A F H E GF P P+ PQ ++
Sbjct: 37 NIYKGVISNIEPSLQAAF-------VHYGAERQGFLPISEIHPEYFQPEAPQRSRP---- 85
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG- 341
K ++KG +++VQV+KE + +KG LT Y L RF +L+ ++IG+SRKI
Sbjct: 86 ---KIQEVLKKGQELLVQVIKEEIASKGAYLTTYISLPGRFLVLLPGQEQIGISRKIEEE 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
R LK + K G GL +RT + ELQKD + L + W+ I ++A
Sbjct: 143 ARRQELKALIKEFNLTHGMGLIVRTASEAAKKRELQKDYQYLNNIWQEIKKNAG------ 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P L+++ + + ++DY+ + ++++D T+ ++ ++ + +P + +
Sbjct: 197 ----QSPAPALIYKELDLVIRTIRDYYTADINEILIDDVETFTQIKNFFKAFSPKHTNVL 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY ++ P+F K+ IEE++ + +VPL +GG +VI TEALV+IDVN G +
Sbjct: 253 KLYKEKRPIFSKYQIEEQLERLYDNQVPLKSGGGVVINPTEALVAIDVNSGRCI--SPKE 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA++IAR+LRLRD+GG+IV+DFIDM D +++ V +E+K A++++++ V
Sbjct: 311 VEETAFKTNLEAAQEIARQLRLRDLGGLIVIDFIDMKDRKHRKEVEKELKAALKKEKARV 370
Query: 581 KVSELSRHGLMEITRKR 597
V ++S+ GL+E++R+R
Sbjct: 371 TVGQISKFGLLELSRQR 387
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN+S R+A++ED KL E LE ++Y GV++ + P++ AFV+ G
Sbjct: 1 MLINASDPEEFRVAIVEDGKLEEFALEAASREQLKGNIYKGVISNIEPSLQAAFVHYGAE 60
Query: 138 RPSLMDIKHYREPFIFP--PFRCRTKKQEV 165
R + I + P P R R K QEV
Sbjct: 61 RQGFLPISEIHPEYFQPEAPQRSRPKIQEV 90
>gi|407716440|ref|YP_006837720.1| ribonuclease E [Cycloclasticus sp. P1]
gi|407256776|gb|AFT67217.1| Ribonuclease E [Cycloclasticus sp. P1]
Length = 855
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 184/310 (59%), Gaps = 14/310 (4%)
Query: 290 QVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLK 348
Q+++G +++VQV KE G KG LT L + +L+ + G+SR+I G RT L+
Sbjct: 90 QIKEGLEIVVQVEKEERGNKGAALTTQISLAGSYLVLMPNNPGSGGISRRIDGDNRTALR 149
Query: 349 VIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA 407
+ L+ PE GL +RT G S+EELQ DL L W I +LA+ +
Sbjct: 150 EVLDQLEIPENIGLIVRTAGVGKSVEELQWDLNYLTHLWDAI-------SLASKDR---K 199
Query: 408 VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI 467
P L+ + + ++DY + ++++DS +++ ++Q I P RV+LY+ +
Sbjct: 200 APYLIFQESNFVIRSIRDYLRADIDEVLIDSEASFNLAHDFMQQIMPQYLSRVKLYEDSV 259
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
PLF ++ IE +I + VPLP+GGS+VI+ TEAL SID+N G+ E L+
Sbjct: 260 PLFTRYQIESQIETAYGREVPLPSGGSIVIDPTEALTSIDINSARAT--KGADFETTALN 317
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
+NL AA +IAR+LR+RD+GG+ V+DFIDM N+R+V +K+A++ DR+ ++ S +SR
Sbjct: 318 INLEAADEIARQLRIRDMGGLFVIDFIDMGPTKNQRMVENRIKEAMKHDRARIQFSRISR 377
Query: 588 HGLMEITRKR 597
GL+E++R+R
Sbjct: 378 FGLLEMSRQR 387
>gi|380696170|ref|ZP_09861029.1| ribonuclease G [Bacteroides faecis MAJ27]
Length = 524
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 187/306 (61%), Gaps = 11/306 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ L+ W++ M + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLIKHWEDAMAKVQKAT---------KYPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRA 598
ITR+R
Sbjct: 409 ITRQRV 414
Score = 43.1 bits (100), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKFVKQTLSDKKKLNSISKATLLPD---LDKDGTVANTLKVGQ 120
>gi|122879239|ref|YP_201712.6| ribonuclease E [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 1232
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 213/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIREL----LREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY V +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++ + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQR 389
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|421482797|ref|ZP_15930377.1| ribonuclease E [Achromobacter piechaudii HLE]
gi|400199108|gb|EJO32064.1| ribonuclease E [Achromobacter piechaudii HLE]
Length = 1034
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 187/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P+G + RT G ++EELQ DL LL W I A+ + +
Sbjct: 153 TMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQLWTAIDGAAR----------DNSA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALVS+DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVSVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFI 152
R + K F
Sbjct: 64 RHGFLPFKEVARSFF 78
>gi|423016223|ref|ZP_17006944.1| ribonuclease E [Achromobacter xylosoxidans AXX-A]
gi|338780749|gb|EGP45150.1| ribonuclease E [Achromobacter xylosoxidans AXX-A]
Length = 1020
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 187/309 (60%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P+G + RT G ++EELQ DL LL W I A+ + +
Sbjct: 153 TMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQLWTAIDGAAR----------DNSA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALVS+DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVSVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 381 GLMELSRQR 389
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|303252909|ref|ZP_07339067.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|302648235|gb|EFL78433.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
Length = 995
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPADYVFNGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 142 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ ++ S +SR GL+E++R+R
Sbjct: 370 RARIQFSRISRFGLLEMSRQR 390
>gi|58427290|gb|AAW76327.1| ribonuclease E [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 1237
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 213/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 31 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 82
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 83 FQA---GVDHNKSTIREL----LREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLMP 135
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 136 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 195
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY V +++VD+P Y +
Sbjct: 196 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ 245
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++ + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 246 EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 305
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 306 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 363
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 364 NKLQNALKYDRARVQLGRISRFGLMEMSRQR 394
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 9 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 68
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 69 RHGFLPLK 76
>gi|430375678|ref|ZP_19430081.1| ribonuclease E [Moraxella macacae 0408225]
gi|429540909|gb|ELA08937.1| ribonuclease E [Moraxella macacae 0408225]
Length = 1316
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 197/344 (57%), Gaps = 23/344 (6%)
Query: 256 GFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTA 315
GF P + E+ ++ P+ T + K +++G ++IVQ+ KE G KG L+
Sbjct: 66 GFLPMR-EIANEYFLGDPRTTTNLKQL--------IKEGDELIVQIEKEERGNKGAALST 116
Query: 316 YPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLE 373
+ L R+ +L+ + R G +SR+I+G R +K +LQ P+ + +RT G S +
Sbjct: 117 FISLAGRYLVLMPNNPRGGGISRQISGKLREEMKQAIASLQLPKNMSVILRTAGIGKSTD 176
Query: 374 ELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKK 433
ELQ+DL+ LLS W+NI+ K+ P L+H+ V+DY + + +
Sbjct: 177 ELQRDLDHLLSIWQNILYQNKNFP----------SPRLVHQEASVITRAVRDYLRDDIAE 226
Query: 434 MVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGG 493
+ +D+ Y+E +++ + P +++ Y P+F +F IE +I + V LP+GG
Sbjct: 227 IWIDNEHAYNEAAHFIESMMPQQLNKLRKYTDYEPMFSRFGIERQIETAYQREVRLPSGG 286
Query: 494 SLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDF 553
S+VI+QTEALVSID+N GS + + NL AA +IAR+LRLRD+GG+IV+DF
Sbjct: 287 SIVIDQTEALVSIDINSSKST--KGSDVSETAFNTNLEAADEIARQLRLRDMGGLIVIDF 344
Query: 554 IDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
IDM D +++ V +K+A DR+ ++ +E+SR GL+E++R+R
Sbjct: 345 IDMTTDEHQKQVENRLKEATRTDRARLQFAEISRFGLLEMSRQR 388
>gi|260912463|ref|ZP_05919000.1| ribonuclease G [Prevotella sp. oral taxon 472 str. F0295]
gi|260633435|gb|EEX51588.1| ribonuclease G [Prevotella sp. oral taxon 472 str. F0295]
Length = 524
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 135/401 (33%), Positives = 215/401 (53%), Gaps = 23/401 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK- 277
V +++ +N +D G F +L+ L + + + +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGFERDAFLHYLD----LGSQFDSYAKYLKQVQSDRKKLYPFAKAS 101
Query: 278 ---DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K +T L G +V+VQ+VKE + TKGP LT R+ ILI D++
Sbjct: 102 RLPDLKKDGSVQTTLT--SGQEVLVQIVKEPISTKGPRLTCELSFAGRYLILIPFNDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L W+ +E
Sbjct: 160 VSSKIKSGEERARLKQLIHSIKPKNCGVIVRTVAEGKRVAELDAELKTLTKYWEEAIEKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ + P L+ + +++++D FN + + V+ + EV Y+ IA
Sbjct: 220 QKSQ---------KRPHLVFEETSRAVALLRDLFNPTYENIYVNDEDVFKEVRHYVSMIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
PD D V+LY ++P+FD FNI ++I + K V +G L+IE TEAL +DVN G+
Sbjct: 271 PDKVDIVKLYSGKVPIFDNFNITKQIKSSFGKAVNYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A L+VNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 TRSEKGQEANA-LEVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRA--MMEQKADPENPKSW 612
++DR+ + LS+ GLM+ITR+R M+ D P +
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDLSVDETCPTCF 430
Score = 42.4 bits (98), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+KLVE E + + +VY+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKKLVEYQSETREVSFSVGNVYVAKVKKLMPGLNACFVDVGFERDAFL---HY 70
>gi|313139492|ref|ZP_07801685.1| ribonuclease G [Bifidobacterium bifidum NCIMB 41171]
gi|313132002|gb|EFR49619.1| ribonuclease G [Bifidobacterium bifidum NCIMB 41171]
Length = 952
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 191/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 560 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 619
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G E + KDLE L+ W+ I +AK +E G
Sbjct: 620 GIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 672
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +++V+ + Y + YL +APDL +++ +D
Sbjct: 673 PKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEYLDTMAPDLKEKLSKWDPSEH 732
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 733 QGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 791
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL AA++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 792 VTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 851
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 852 VTSLGLVQMTRKR 864
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
S + + +F++ +N + +R I+V+ED LVE + ++ ++YLG V
Sbjct: 458 SQLVEQDFLARREHVNRLMVVRERGHHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRV 517
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG SR ++
Sbjct: 518 QNVLPSMEAAFVDIGQSRNGVL 539
>gi|268315782|ref|YP_003289501.1| ribonuclease, Rne/Rng family [Rhodothermus marinus DSM 4252]
gi|262333316|gb|ACY47113.1| ribonuclease, Rne/Rng family [Rhodothermus marinus DSM 4252]
Length = 604
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 192/312 (61%), Gaps = 20/312 (6%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
+++ ++V+++KE + +KG ++ L RF +L+ + + VS+KIT ER RL+
Sbjct: 181 LKRDQPLLVKIIKEPISSKGSRVSTDISLAGRFLVLVPFANYVAVSKKITSYKERRRLRA 240
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW----KNIMEHAKSAALAADEGVE 405
+A++L PEGFG+ +RTVA G + + L DL LL W K + EH K
Sbjct: 241 LARSLLPEGFGVIVRTVAEGQTAKALDTDLRLLLEKWERIEKKLAEHPKP---------- 290
Query: 406 GAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDK 465
P+LLH + S+++D F+E +++VD+PR + + SY+Q +AP + V+LY
Sbjct: 291 ---PVLLHEDVNMVSSVIRDLFSEDCTRILVDNPRLHRNIRSYVQAVAPHKVEVVQLYRG 347
Query: 466 RIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAI 525
+ +F I E++ RV LP+GG L IE TEA+ IDVN G G G S+E+
Sbjct: 348 KEHIFKATGIAEQVAQAFESRVDLPSGGYLYIEHTEAMHVIDVNSGRA--GRGLSQEENS 405
Query: 526 LDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSEL 585
L VNL AA+ IA+++R+RD+GGIIV+DFID+ D+ NK+ VY+E+KK +DR++ K+ +
Sbjct: 406 LRVNLEAARVIAQQVRVRDLGGIIVIDFIDLKDEKNKKKVYDELKKEFRKDRAVTKILPM 465
Query: 586 SRHGLMEITRKR 597
S GL++ITR+R
Sbjct: 466 SDFGLVQITRQR 477
>gi|311063689|ref|YP_003970414.1| ribonuclease G [Bifidobacterium bifidum PRL2010]
gi|310866008|gb|ADP35377.1| Rne Ribonuclease G [Bifidobacterium bifidum PRL2010]
Length = 955
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 191/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 563 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 622
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G E + KDLE L+ W+ I +AK +E G
Sbjct: 623 GIVSKIAPKDMGVIIRTAAEGAKEEAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 675
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +++V+ + Y + YL +APDL +++ +D
Sbjct: 676 PKLLQGEPDVAIRVVRDIFNDNFGELIVEGDKVYERIEEYLDTMAPDLKEKLSKWDPSEH 735
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 736 QGKDVFDKWQIDAQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 794
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL AA++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 795 VTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 854
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 855 VTSLGLVQMTRKR 867
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG SR ++
Sbjct: 489 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQSRNGVL 542
>gi|256824998|ref|YP_003148958.1| RNAse G [Kytococcus sedentarius DSM 20547]
gi|256688391|gb|ACV06193.1| RNAse G [Kytococcus sedentarius DSM 20547]
Length = 959
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 187/307 (60%), Gaps = 11/307 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
+Q G V+VQV K+ +G KG LT L R+ + + G+SRK+ ER RLK I
Sbjct: 405 LQPGQPVLVQVTKDPIGHKGARLTGQISLPGRYLVYVPGNTTTGISRKLPDTERARLKKI 464
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G+ +RT A G + EL+ D+E L + W+ I +AA A +G+ P
Sbjct: 465 LKDVVPADAGVIVRTAAEGAAEAELRADVERLTTQWERI-----AAAQA-----KGSAPT 514
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H T+ +++D FNE K+VV P + VTSY+ +APDL ++E ++ +F
Sbjct: 515 LVHGEPDLTVRVIRDVFNEDFTKLVVSGPTAWESVTSYIDAVAPDLTPKLERWEGEQDVF 574
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IEE+I + ++V LP+GGSL+ ++TEA+ +DVN G G G + E+ + N+
Sbjct: 575 EHHRIEEQIAKAMDRKVWLPSGGSLIFDRTEAMTVVDVNTGK-FVGSGGNLEETVTKNNI 633
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 634 EAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLARDRTKHQVAEVTSLGL 693
Query: 591 MEITRKR 597
+++TRKR
Sbjct: 694 VQMTRKR 700
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 59 SLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLG 118
++L E L +++ T+++ S+ T ++ VLED LVE ++ + +VYLG
Sbjct: 300 TVLTEAEFLARRESVHRTMVVRESAEYT--QVGVLEDGVLVEHYIDRQQQTTMVGNVYLG 357
Query: 119 VVTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG R ++
Sbjct: 358 RVQNVLPSMEAAFVDIGKGRNGVL 381
>gi|165976871|ref|YP_001652464.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|165876972|gb|ABY70020.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 995
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 184/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 94 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 154 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFSRISRF 381
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 382 GLLEMSRQR 390
>gi|126208900|ref|YP_001054125.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|126097692|gb|ABN74520.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
Length = 995
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 38/381 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPADYVFNGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 142 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKR 597
R+ ++ S +SR GL+E++R+R
Sbjct: 370 RARIQFSRISRFGLLEMSRQR 390
>gi|84624583|ref|YP_451955.1| ribonuclease E [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|84368523|dbj|BAE69681.1| ribonuclease E [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 1240
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 213/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIREL----LREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY V +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++ + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQR 389
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|78047979|ref|YP_364154.1| ribonuclease E [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78036409|emb|CAJ24100.1| ribonuclease E [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 1216
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 212/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIREL----LREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY V +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++ + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 359 NRLQNALKYDRARVQLGRISRFGLMEMSRQR 389
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|188577475|ref|YP_001914404.1| ribonuclease E [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521927|gb|ACD59872.1| ribonuclease E [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 1238
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 213/391 (54%), Gaps = 36/391 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIREL----LREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY V +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++ + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
+++ A++ DR+ V++ +SR GLME++R+R
Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQR 389
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|375094377|ref|ZP_09740642.1| ribonuclease, Rne/Rng family [Saccharomonospora marina XMU15]
gi|374655110|gb|EHR49943.1| ribonuclease, Rne/Rng family [Saccharomonospora marina XMU15]
Length = 982
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 184/304 (60%), Gaps = 6/304 (1%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT L RF + + + G+SRK+ ER RLK I K
Sbjct: 456 GDNVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPAGGATGISRKLPENERRRLKDILKR 515
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ PE G+ IRT + G S EEL +D+ L + W+ I E A+SA+ G + P LL+
Sbjct: 516 IVPEDAGVIIRTASEGISEEELARDVRRLKAQWEVIKEKAESAS-----GKKSGAPALLY 570
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ +V+D F E K+ V + + +Y+ +APDL DR++ Y + +F +
Sbjct: 571 EEPDLLVKVVRDLFTEDFAKLEVQGDTAWETIHAYVDHVAPDLSDRLKRYAGKGDVFADY 630
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I+E++ L ++V LP+GG LVI++TEA+ IDVN G G G + E+ + NL +A
Sbjct: 631 RIDEQLTKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTRNNLESA 689
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 690 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRDRTRHQVAEVTSLGLVQM 749
Query: 594 TRKR 597
TRKR
Sbjct: 750 TRKR 753
Score = 45.8 bits (107), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVEL 101
L++ Q+ +D + ++S+ F++ + ++ +R I VLED LVE
Sbjct: 330 LEAKRQRRRDGREAGRRRAPILSEAEFLARRESVERTMVVAERGDSTQIGVLEDGVLVEH 389
Query: 102 LLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ S +VYLG V ++P+M AF++IG R +++
Sbjct: 390 FVTSSGSGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVL 430
>gi|320531422|ref|ZP_08032387.1| S1 RNA binding domain protein, partial [Actinomyces sp. oral taxon
171 str. F0337]
gi|320136361|gb|EFW28344.1| S1 RNA binding domain protein [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 832
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 187/304 (61%), Gaps = 6/304 (1%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L R+ +L+ G+SRK+ ER+RLK I K
Sbjct: 271 GDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGGTMTGISRKLPDTERSRLKKILKR 330
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ +RT A G + E+L D+E L++ W+ I + A S + G P+LL
Sbjct: 331 IVPDSAGVIVRTAAEGATQEQLTADVERLVNQWEAIDKKASSIMKGS-----GKAPVLLK 385
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ +++D FNE +K+VV T+ ++ Y+ D++PDL +R+E + +F
Sbjct: 386 GEPELAVRVIRDVFNEDFRKLVVSGDNTWSTISQYIDDVSPDLSERLEHWVGPEDVFTAH 445
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
++E++ ++V LP+GG+LVI++TEA+ IDVN G G G + E+ + NL AA
Sbjct: 446 RVDEQLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGR-FTGAGGTLEETVTRNNLEAA 504
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGG++V+DF+DM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 505 EEIVRQLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECLGRDRTRHQVTEVTSLGLVQM 564
Query: 594 TRKR 597
TRKR
Sbjct: 565 TRKR 568
>gi|345302073|ref|YP_004823975.1| Rne/Rng family ribonuclease [Rhodothermus marinus SG0.5JP17-172]
gi|345111306|gb|AEN72138.1| ribonuclease, Rne/Rng family [Rhodothermus marinus SG0.5JP17-172]
Length = 604
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 192/312 (61%), Gaps = 20/312 (6%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
+++ ++V+++KE + +KG ++ L RF +L+ + + VS+KIT ER RL+
Sbjct: 181 LKRDQPLLVKIIKEPISSKGSRVSTDISLAGRFLVLVPFANYVAVSKKITSYKERRRLRA 240
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW----KNIMEHAKSAALAADEGVE 405
+A++L PEGFG+ +RTVA G + + L DL LL W K + EH K
Sbjct: 241 LARSLLPEGFGVIVRTVAEGQTAKALDTDLRLLLEKWERIEKKLAEHPKP---------- 290
Query: 406 GAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDK 465
P+LLH + S+++D F+E +++VD+PR + + SY+Q +AP + V+LY
Sbjct: 291 ---PVLLHEDVNMVSSVIRDLFSEDCTRILVDNPRLHRNIRSYVQAVAPHKVEVVQLYRG 347
Query: 466 RIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAI 525
+ +F I E++ RV LP+GG L IE TEA+ IDVN G G G S+E+
Sbjct: 348 KEHIFKATGIAEQVAQAFESRVDLPSGGYLYIEHTEAMHVIDVNSGRA--GRGLSQEENS 405
Query: 526 LDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSEL 585
L VNL AA+ IA+++R+RD+GGIIV+DFID+ D+ NK+ VY+E+KK +DR++ K+ +
Sbjct: 406 LRVNLEAARVIAQQVRVRDLGGIIVIDFIDLKDEKNKKKVYDELKKEFRKDRAVTKILPM 465
Query: 586 SRHGLMEITRKR 597
S GL++ITR+R
Sbjct: 466 SDFGLVQITRQR 477
>gi|206559375|ref|YP_002230136.1| putative ribonuclease E [Burkholderia cenocepacia J2315]
gi|206561223|ref|YP_002231988.1| ribonuclease E 1 [Burkholderia cenocepacia J2315]
gi|444363009|ref|ZP_21163490.1| ribonuclease E/G family protein [Burkholderia cenocepacia BC7]
gi|198035413|emb|CAR51289.1| putative ribonuclease E [Burkholderia cenocepacia J2315]
gi|198037265|emb|CAR53187.1| ribonuclease E 1 [Burkholderia cenocepacia J2315]
gi|443595780|gb|ELT64335.1| ribonuclease E/G family protein [Burkholderia cenocepacia BC7]
Length = 1054
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 184/309 (59%), Gaps = 12/309 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNAGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMPDNVAKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKR 597
GLME++R+R
Sbjct: 383 GLMELSRQR 391
Score = 43.1 bits (100), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|393788968|ref|ZP_10377092.1| rne/Rng family ribonuclease [Bacteroides nordii CL02T12C05]
gi|392652947|gb|EIY46604.1| rne/Rng family ribonuclease [Bacteroides nordii CL02T12C05]
Length = 524
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 188/306 (61%), Gaps = 11/306 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ L+ W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLIKHWEDAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V++ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIYVNNEAVYNEIKDYVTLIAPDRAEIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K + +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRA 598
ITR+R
Sbjct: 409 ITRQRV 414
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG V KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKFVKQTLSDKKKLNSISKATLLPDL---DKDGTVANTLKVGQ 120
>gi|373460231|ref|ZP_09551986.1| rne/Rng family ribonuclease [Prevotella maculosa OT 289]
gi|371956316|gb|EHO74105.1| rne/Rng family ribonuclease [Prevotella maculosa OT 289]
Length = 524
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 130/385 (33%), Positives = 211/385 (54%), Gaps = 21/385 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP----Q 274
V +++ +N +D G F +L+ L + N + +V D +P Q
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYTKYLKQVSSDRKRLYPFSKAQ 101
Query: 275 GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ++KE + TKGP LT RF +LI D++
Sbjct: 102 KLPDLKKDGSVQQVLTV--GQEVLVQIIKEPISTKGPRLTGELSFAGRFIVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL ++ L W++ +
Sbjct: 160 VSSKIKSGEERARLKQLIYSIKPKNCGVIVRTVAEGKRVAELDTEMNVLTKRWEDAILKT 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ + P L+ G+ +++++D FN + + V++ Y+EV YL IA
Sbjct: 220 QK---------QQKRPQLVFEETGRAIAMLRDLFNPSFENIYVNNEEAYNEVKHYLTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+ Y ++P+FD FN+ ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PEKAGIVKHYTGKVPIFDNFNVTKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 TRSENGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRA 598
++DR+ + LS+ GLM+ITR+R
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRV 414
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+KLVE EP +++ ++Y V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKKLVEYQNEPRQASFSVGNIYAAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|227547009|ref|ZP_03977058.1| Rne/Rng family ribonuclease [Bifidobacterium longum subsp. longum
ATCC 55813]
gi|227212541|gb|EEI80430.1| Rne/Rng family ribonuclease [Bifidobacterium longum subsp. infantis
ATCC 55813]
Length = 477
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 194/313 (61%), Gaps = 12/313 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 85 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 144
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 145 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 197
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 198 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 257
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 258 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 316
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 317 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 376
Query: 585 LSRHGLMEITRKR 597
++ GL+++TRKR
Sbjct: 377 VTSLGLVQMTRKR 389
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 11 QISVVEDNVLVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 64
>gi|349575680|ref|ZP_08887587.1| ribonuclease E [Neisseria shayeganii 871]
gi|348012689|gb|EGY51629.1| ribonuclease E [Neisseria shayeganii 871]
Length = 981
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 185/309 (59%), Gaps = 14/309 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV K+ G KG LT + L R+ +L+ + R G VSR+I G ER LK
Sbjct: 92 LREGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKA 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G L RT G S+EELQ D LL W+NI ++A A E
Sbjct: 152 AMAELDVPRGMSLIARTAGIGRSVEELQWDFNYLLQLWQNI----EAAGQAHHE------ 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LL + ++DYF + ++++D+ Y +V ++ + P+ +++ YD IP
Sbjct: 202 PYLLFMESSLLIRAIRDYFRPDIGEILIDNQEVYEQVQEFMSYVMPNNVGKLKHYDDHIP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I + S+ V LP+GG++VI+ TEALVS+DVN G+ E
Sbjct: 262 LFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSVDVNSARAT--RGADIEDTAFKT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AA+++AR++RLRD+GG+IV+DFIDM + ++R V ++ A+++DR+ V++ +LSR
Sbjct: 320 NMEAAEELARQMRLRDLGGLIVIDFIDMENPKHQRDVENTLRDALKKDRARVQMGKLSRF 379
Query: 589 GLMEITRKR 597
GL+E++R+R
Sbjct: 380 GLLELSRQR 388
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ + L++L +E + + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYGTD 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,959,746,865
Number of Sequences: 23463169
Number of extensions: 468487243
Number of successful extensions: 1355960
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4252
Number of HSP's successfully gapped in prelim test: 617
Number of HSP's that attempted gapping in prelim test: 1322947
Number of HSP's gapped (non-prelim): 16348
length of query: 708
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 558
effective length of database: 8,839,720,017
effective search space: 4932563769486
effective search space used: 4932563769486
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 81 (35.8 bits)