Query 005219
Match_columns 708
No_of_seqs 279 out of 1124
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bx2_L Ribonuclease E, RNAse E 100.0 1E-123 5E-128 1035.6 50.8 461 74-669 7-501 (517)
2 3cw2_C Translation initiation 98.6 6E-09 2E-13 108.0 1.4 84 289-396 56-143 (266)
3 1q8k_A Eukaryotic translation 98.2 7.4E-07 2.5E-11 94.3 5.3 84 289-396 58-153 (308)
4 2eqs_A ATP-dependent RNA helic 97.6 0.00013 4.3E-09 65.1 7.4 38 108-147 8-48 (103)
5 2k52_A Uncharacterized protein 97.5 0.00024 8.2E-09 60.3 7.8 36 110-147 3-38 (80)
6 2khj_A 30S ribosomal protein S 97.5 0.00022 7.4E-09 63.9 7.2 39 107-147 26-64 (109)
7 2k4k_A GSP13, general stress p 97.4 0.0004 1.4E-08 64.5 8.8 37 109-147 4-40 (130)
8 2cqo_A Nucleolar protein of 40 97.4 0.00021 7.3E-09 65.5 6.9 38 108-147 18-56 (119)
9 2khi_A 30S ribosomal protein S 97.3 0.00069 2.3E-08 61.4 9.1 39 107-147 25-63 (115)
10 3m7n_A Putative uncharacterize 96.3 0.0097 3.3E-07 58.0 8.4 35 110-147 56-100 (179)
11 1kl9_A Eukaryotic translation 96.3 0.0068 2.3E-07 59.5 7.3 35 111-147 14-50 (182)
12 3aev_A Translation initiation 96.2 0.011 3.6E-07 61.7 8.6 35 111-147 10-46 (275)
13 1y14_B B16, RPB7, DNA-directed 96.1 0.0083 2.9E-07 57.8 6.7 34 111-147 82-115 (171)
14 1go3_E DNA-directed RNA polyme 96.0 0.01 3.4E-07 57.7 6.7 36 109-147 78-113 (187)
15 2a19_A EIF-2- alpha, eukaryoti 95.8 0.018 6.1E-07 56.2 7.6 34 112-147 15-50 (175)
16 2b8k_G B16, DNA-directed RNA p 95.5 0.023 7.8E-07 57.2 7.1 34 111-147 82-115 (215)
17 1wi5_A RRP5 protein homolog; S 94.8 0.048 1.6E-06 49.3 6.5 34 109-144 18-51 (119)
18 2ba0_A Archeal exosome RNA bin 94.4 0.24 8.1E-06 50.1 11.1 45 101-147 44-90 (229)
19 2c35_B Human RPB7, DNA-directe 94.4 0.044 1.5E-06 52.6 5.5 34 111-147 80-113 (172)
20 2z0s_A Probable exosome comple 93.3 0.2 6.7E-06 50.8 8.3 36 110-147 64-99 (235)
21 2nn6_I 3'-5' exoribonuclease C 93.0 0.22 7.4E-06 49.8 7.8 26 109-136 78-103 (209)
22 3h0g_G DNA-directed RNA polyme 92.4 0.13 4.5E-06 49.6 5.2 36 109-147 81-116 (172)
23 3cdi_A Polynucleotide phosphor 92.4 0.024 8.3E-07 66.2 0.0 39 107-147 622-660 (723)
24 2je6_I RRP4, exosome complex R 92.3 0.32 1.1E-05 49.9 8.3 45 101-147 60-107 (251)
25 3psi_A Transcription elongatio 92.3 0.18 6E-06 62.1 7.3 38 108-147 898-935 (1219)
26 1luz_A Protein K3, protein K2; 91.7 0.14 4.7E-06 44.4 4.0 35 110-147 9-46 (88)
27 3bzc_A TEX; helix-turn-helix, 91.5 0.082 2.8E-06 62.3 3.1 37 109-147 651-687 (785)
28 1hh2_P NUSA, N utilization sub 90.9 0.33 1.1E-05 52.1 6.8 34 110-146 132-165 (344)
29 1a6f_A RNAse P protein, ribonu 90.9 0.76 2.6E-05 41.8 8.3 53 333-385 48-109 (119)
30 4ayb_E DNA-directed RNA polyme 89.7 1 3.4E-05 43.4 8.5 36 109-147 78-113 (180)
31 4aid_A Polyribonucleotide nucl 89.5 0.067 2.3E-06 62.5 0.0 59 87-147 600-670 (726)
32 3go5_A Multidomain protein wit 88.3 0.36 1.2E-05 50.4 4.6 38 109-147 66-104 (285)
33 1k0r_A NUSA; two component arr 86.8 1.1 3.7E-05 48.5 7.2 35 110-146 128-169 (366)
34 1d6t_A Ribonuclease P, RNAse P 86.6 0.75 2.6E-05 41.6 5.0 54 333-386 47-109 (117)
35 3psf_A Transcription elongatio 86.5 0.13 4.6E-06 62.1 0.0 37 109-147 902-938 (1030)
36 2ljp_A Ribonuclease P protein 85.4 1.8 6.1E-05 39.2 7.0 55 332-386 48-112 (119)
37 2asb_A Transcription elongatio 81.9 2.8 9.5E-05 43.2 7.4 34 110-145 5-45 (251)
38 3go5_A Multidomain protein wit 80.1 3 0.0001 43.4 7.1 40 105-146 145-185 (285)
39 1e3p_A Guanosine pentaphosphat 76.2 0.57 2E-05 55.0 0.3 38 108-147 663-700 (757)
40 1nz0_A Ribonuclease P protein 75.9 3 0.0001 37.7 4.9 52 333-384 49-114 (118)
41 2bh8_A 1B11; transcription, mo 72.5 5.9 0.0002 34.9 5.8 38 108-147 57-94 (101)
42 2m0o_A PHD finger protein 1; t 59.6 9.2 0.00031 32.8 4.1 36 113-148 40-75 (79)
43 2ja9_A Exosome complex exonucl 57.9 10 0.00034 36.9 4.8 35 110-146 5-40 (175)
44 2e5q_A PHD finger protein 19; 54.1 12 0.00042 30.8 3.9 36 113-148 21-56 (63)
45 2e5p_A Protein PHF1, PHD finge 50.8 16 0.00056 30.5 4.1 36 113-148 23-58 (68)
46 2nn6_H Exosome complex exonucl 49.1 17 0.00057 38.4 5.1 44 102-147 83-128 (308)
47 1x4m_A FAR upstream element bi 43.5 86 0.0029 26.8 7.9 54 613-666 15-68 (94)
48 4hcz_A PHD finger protein 1; p 36.6 43 0.0015 27.2 4.5 35 113-147 17-51 (58)
49 1ec6_A RNA-binding protein NOV 31.2 1.6E+02 0.0055 24.5 7.6 54 614-667 4-58 (87)
50 2wp8_J Exosome complex exonucl 26.1 93 0.0032 37.7 7.0 33 113-147 887-920 (977)
51 2vkc_A NEDD4-binding protein 2 24.8 77 0.0026 29.1 4.7 51 523-574 29-79 (135)
52 2opv_A KHSRP protein; KH domai 24.0 1.5E+02 0.0052 24.6 6.1 41 613-653 14-54 (85)
53 1vig_A Vigilin; RNA-binding pr 22.0 63 0.0022 26.2 3.2 39 614-652 6-44 (71)
54 2id0_A Exoribonuclease 2; RNAs 21.0 70 0.0024 36.7 4.4 35 111-147 557-594 (644)
55 2qgh_A Diaminopimelate decarbo 21.0 2.8E+02 0.0096 29.5 8.9 151 408-574 102-270 (425)
No 1
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=100.00 E-value=1.4e-123 Score=1035.61 Aligned_cols=461 Identities=30% Similarity=0.535 Sum_probs=413.0
Q ss_pred CceEEEEEecCCCeEEEEEEECCEEEEEEeecCCCCcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccCCCCCcC
Q 005219 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIF 153 (708)
Q Consensus 74 m~keilIn~~~~~e~RvAvlEdgkL~El~iE~~~~~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~~~~~~~ 153 (708)
|+++||||+++++++|||++|||+|+||++|+......+||||+|+|+||+|+|||||||||.+++||||++++...++
T Consensus 7 ~M~~ilI~~~~~ee~rvAl~e~~~L~el~iE~~~~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~- 85 (517)
T 2bx2_L 7 HMKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYF- 85 (517)
T ss_dssp SCEEEEEECSCTTCEEEEEEETTEEEEEEEECSSSCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGC-
T ss_pred chheEEEEcCCCCeEEEEEEeCCEEEEEEEecCCCcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhh-
Confidence 6678999998668999999999999999999999999999999999999999999999999999999999998621110
Q ss_pred CcccccchhhhccccchhhhhhhhcccCCCCCCCCcchhhhcccccccccccCCCCCCCCCCCcchhhhhhccCCcccCC
Q 005219 154 PPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDD 233 (708)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (708)
. . . . . .
T Consensus 86 ----~---~-----------------------------------------------~-~--------~---~-------- 91 (517)
T 2bx2_L 86 ----P---A-----------------------------------------------N-Y--------S---A-------- 91 (517)
T ss_dssp ----C---------------------------------------------------------------------------
T ss_pred ----c---c-----------------------------------------------c-c--------c---c--------
Confidence 0 0 0 0 0 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCEEEEEEEecCCCCCCcee
Q 005219 234 GEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313 (708)
Q Consensus 234 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lk~Gq~ILVQV~KE~~gtKGprL 313 (708)
....++.+.|++||+|+|||+|+|+|+|||+|
T Consensus 92 ------------------------------------------------~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~l 123 (517)
T 2bx2_L 92 ------------------------------------------------HGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 123 (517)
T ss_dssp --------------------------------------------------CCCGGGTCCTTCEEEEEEEECCCTTCCCEE
T ss_pred ------------------------------------------------ccccchhhhccCCCEEEEEEEeeccccCCceE
Confidence 00012346799999999999999999999999
Q ss_pred eecceecceeEEEeeCCCce-eeecCCChHHHHHHHHHHHhh-CCCCeeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005219 314 TAYPKLRSRFWILITSCDRI-GVSRKITGVERTRLKVIAKTL-QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391 (708)
Q Consensus 314 Tt~IsL~GRylVl~P~~~~i-giSrKI~~~eR~rLk~i~~~l-~p~~~GvIiRTaA~g~~~eeL~~Dl~~L~~~W~~I~~ 391 (708)
|++||||||||||||+++++ ||||||++++|+|||+++..+ .|+++|+||||+|+|+++++|.+|+++|.++|+.|++
T Consensus 124 Tt~isl~GRylVl~P~~~~~~giSrkI~~~eR~rLk~~~~~~~~~~~~G~IvRT~a~g~~~eel~~dl~~L~~~w~~I~~ 203 (517)
T 2bx2_L 124 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 203 (517)
T ss_dssp ESSCCEECSSEEEETTCTTCCEECTTCC------HHHHHTTSCCCTTCEEEECGGGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeEEeccceEEEeCCCCCcCcccccCChHHHHHHHHHHHhhcCCCCceEEEEcccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 899999988899999999988 5889999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCCCceeeeecCCchhhhhhhhcCCCccEEEEcCHHHHHHHHHHHHhh-CCCcCCceeeccCCCCcc
Q 005219 392 HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDI-APDLCDRVELYDKRIPLF 470 (708)
Q Consensus 392 ~~~~~~~~~~~g~~~~~P~LLy~e~~~~~r~lRD~~~~~v~~IiVDd~~~y~~i~~~l~~~-~p~~~~~v~~y~~~~plF 470 (708)
+++.+ ++|+|||++.+++.+++|||+++++++|+||+++.|+++++|++.+ +|+...+|++|+++.|||
T Consensus 204 ~~~~~----------~~P~ll~~e~~~~~r~lRD~~~~~~~~I~vd~~~~~~~~~~~~~~~~~p~~~~~v~~y~~~~plF 273 (517)
T 2bx2_L 204 AAESR----------PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 273 (517)
T ss_dssp HHHTS----------CSCEEEECCCCHHHHHHHHHCCTTEEEEEESCHHHHHHHHHHHHHTTCHHHHTTEEECCCSSCHH
T ss_pred HHhcC----------CCCEEEEecCcHHHHHHHHHccCCCCEEEECCHHHHHHHHHHHHHhcCccccceEEEEeCCCChh
Confidence 98765 5899999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCHHHHHHHHhCCceeCCCCcEEEEecccceEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCcEE
Q 005219 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550 (708)
Q Consensus 471 ~~y~Ie~qIe~al~r~V~L~sGG~LVIE~TEALtvIDVNSGk~~~~~~~~~eet~lktNLEAA~EIARQLRLRnIGGIIV 550 (708)
+.|+|++||++||+++||||||||||||+||||||||||||++ +++.++++|+++||||||+||||||||||||||||
T Consensus 274 ~~y~ie~~i~~al~~~V~L~sGGylvIe~TEALt~IDVNsG~~--~~~~~~eet~~~tNleAA~EIaRQLRLRnlgGiIv 351 (517)
T 2bx2_L 274 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA--TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIV 351 (517)
T ss_dssp HHTTCHHHHHHTTCSEEECTTSCEEEEEECSSCEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HhcCHHHHHHHHhCCeEEcCCCeEEEEecCcceEEEEccCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 9999999999999999999999999999999999999999985 56679999999999999999999999999999999
Q ss_pred EEcCCCCChhhHHHHHHHHHHHHhcCCCCcEEeccCCceeEEEeecCCCcccc--cCCCCCC------------------
Q 005219 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRAMMEQK--ADPENPK------------------ 610 (708)
Q Consensus 551 IDFIDM~~~~~r~~V~~~Lk~alk~Dr~k~~V~~iT~lGLvEmTRkR~~~~~~--~~~~~~~------------------ 610 (708)
||||||++++||++|++.|+++|++|+++++|++||+||||||||||.+.++. .+..||+
T Consensus 352 IDFIdM~~~~~r~~v~~~l~~al~~Dr~k~~v~~~S~lGLvEmTRkR~r~sL~e~~~~~Cp~C~G~G~v~s~~~~~~~i~ 431 (517)
T 2bx2_L 352 IDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL 431 (517)
T ss_dssp EECCCCSSHHHHHHHHHHHHHHTTTCSSCEEEEEECTTSEEEEEECCCSCCHHHHHCCCCSSSSSSSCCCCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhcCCCCcEEeccCCCceEEEeecCcCcChhhhhcCcCCCcCCceeECCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877542 1222332
Q ss_pred ----------CCCeEEEEECHHHHHHHHcCchhhHHHHHhhc-CCeEEEEeCCCCCCcCeEEEEeecCcc
Q 005219 611 ----------SWPRFILRVDHHMCNYLTSGKRTRLAVLSSSL-KAWILLKVARGFTRGAFEVIPYTDDKA 669 (708)
Q Consensus 611 ----------~~~~~~l~v~p~v~~~l~~~~~~~l~~Le~~~-~~~I~i~~d~~l~~~~~~i~~~~~~~~ 669 (708)
....+.+.+||+|++||.++++..+..||.++ |++|.|.++++|++++|+|..+++++.
T Consensus 432 R~i~~~~~~~~~~~~~~~~~~~va~~l~~~~~~~l~~le~~~~~~~i~i~~~~~~~~~~y~i~~~~~~~~ 501 (517)
T 2bx2_L 432 RLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEE 501 (517)
T ss_dssp HHHHHHHHSTTEEEEEEEECHHHHHHHTTTTHHHHHHHHHHTTTCEEEEEECTTCCTTCCEEEEEETTCC
T ss_pred HHHHHHHhhcCCceEEEEECHHHHHHHHhcchHHHHHHHHHcCCceEEEEECCCCCCCceEEEEccCCcc
Confidence 12469999999999999999999999999999 999999999999999999999887664
No 2
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.62 E-value=6e-09 Score=108.02 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=61.2
Q ss_pred ccccCCCEEEEEEEecCCCCCCceeeecceecceeEEEeeCCCceeeecCCChHHHHHHHHHHHhhCCC-CeeEEEeecC
Q 005219 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPE-GFGLTIRTVA 367 (708)
Q Consensus 289 ~~lk~Gq~ILVQV~KE~~gtKGprLTt~IsL~GRylVl~P~~~~igiSrKI~~~eR~rLk~i~~~l~p~-~~GvIiRTaA 367 (708)
..++.||.|.|||.+-.. ...++++|.|.... ..++.+.+.+.+. ..+.|+|+.|
T Consensus 56 ~~~~vGd~V~VkVi~vd~----------------------~~g~I~LSlk~~~~--~~~~~~~~~~~~~~~~~~iv~~la 111 (266)
T 3cw2_C 56 DVLKENRKVIVKVIRVDR----------------------RKGTVDVSLKKVTD--DERRKKNLQWKKIQRLDKILELVS 111 (266)
T ss_dssp HHSCTTCEEEEEECCCCS----------------------SSCCCBEESTTSCT--THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcCCCEEEEEEEEEeC----------------------CCCEEEEEEEecch--hhHHHHHHhccccCccceeeeehh
Confidence 468899999999998642 33467788887542 2333344443322 4577889888
Q ss_pred CCCC--HHHHHHHH-HHHHHHHHHHHHHHHHh
Q 005219 368 AGHS--LEELQKDL-EGLLSTWKNIMEHAKSA 396 (708)
Q Consensus 368 ~g~~--~eeL~~Dl-~~L~~~W~~I~~~~~~~ 396 (708)
.+.+ .+++..|+ .+|.+.|..+...++.+
T Consensus 112 e~~~~~~ee~~~~i~~~l~~~~~~~~~aFk~a 143 (266)
T 3cw2_C 112 QKLKLSEKDAWEQVAWKLEAKYGDPITAIEKA 143 (266)
T ss_dssp HHTTCCHHHHHHHTHHHHHTTSSCHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6555 99999999 99999999999998876
No 3
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.22 E-value=7.4e-07 Score=94.26 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=56.6
Q ss_pred ccccCCCEEEEEEEecCCCCCCceeeecceecceeEEEeeCCCceeeecCCChHHHHHHHHHHHhhCCCC--eeEEEeec
Q 005219 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG--FGLTIRTV 366 (708)
Q Consensus 289 ~~lk~Gq~ILVQV~KE~~gtKGprLTt~IsL~GRylVl~P~~~~igiSrKI~~~eR~rLk~i~~~l~p~~--~GvIiRTa 366 (708)
..+++||.|.|+|.+-. |...++.+|.|.... ..++.+.+.+.... .|.|.|++
T Consensus 58 ~~~kvGd~V~VkVl~vD----------------------~~~~rI~LSlK~~~~--~p~~~~~~~~~~G~~v~G~V~~v~ 113 (308)
T 1q8k_A 58 KLIRIGRNECVKVIRVD----------------------KEKGYIDLSKRRVSP--EEAIKCEDKFTKSKTVYSILRHVA 113 (308)
T ss_dssp TTCSSSCEEEEEEEEEE----------------------TTTTEEEEECSSCCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCEEEEEEEEEe----------------------CCCCEEEEEEEeccc--ChHHHHHHHccCCCeeEEEEEEcc
Confidence 46889999999998765 344567888887542 33444444444322 38999998
Q ss_pred CC-CC----CHHHHHHHH-HHHHHHHHH----HHHHHHHh
Q 005219 367 AA-GH----SLEELQKDL-EGLLSTWKN----IMEHAKSA 396 (708)
Q Consensus 367 A~-g~----~~eeL~~Dl-~~L~~~W~~----I~~~~~~~ 396 (708)
.. |+ +.++|..++ ..|.+.+.. +...++.+
T Consensus 114 ~~~G~fi~~~~e~l~~~i~~~l~~~~g~~~~~~y~af~~a 153 (308)
T 1q8k_A 114 EVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHA 153 (308)
T ss_dssp HHTTCCSSHHHHHHHHHTHHHHHHHTTCSSHHHHHHHHHT
T ss_pred cccCCccCCCHHHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 85 99 888888888 356666655 55555443
No 4
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.59 E-value=0.00013 Score=65.10 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=33.6
Q ss_pred CCcccCCeEEEEEeeecCCcceEEecccC---CcceeeEeccC
Q 005219 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGN---SRPSLMDIKHY 147 (708)
Q Consensus 108 ~~~~vGnIY~GrV~kV~PgmqAAFVDIG~---~k~aFL~~~d~ 147 (708)
....+|+||.|+|++|.| .+|||+|+. +..||+|+++.
T Consensus 8 ~~~~vG~i~~G~V~~v~~--fG~FV~l~~~~~~~~Glvhisel 48 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQ--FGCFVQLEGLRKRWEGLVHISEL 48 (103)
T ss_dssp SSCCTTCEEEEEEEEECS--SCEEEEECSSSSCCEEEECGGGT
T ss_pred ccCCCCCEEEEEEEEEec--cEEEEEEcCCCCCeEEEEEHHHC
Confidence 345789999999999999 899999996 89999998774
No 5
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=97.51 E-value=0.00024 Score=60.28 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=32.2
Q ss_pred cccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 110 ~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
..+|++|.|+|++|.| .+|||+|+.+..||+++++.
T Consensus 3 ~~~G~iv~G~V~~v~~--~G~fV~l~~~~~Gllh~sel 38 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEK--YGAFINLNEQVRGLLRPRDM 38 (80)
T ss_dssp CCTTCEEEEEEEEEET--TEEEEEEETTEEEEECGGGC
T ss_pred CCCCCEEEEEEEEEeC--CEEEEEECCCCEEEEEHHHC
Confidence 3579999999999999 69999999999999988763
No 6
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.46 E-value=0.00022 Score=63.94 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=34.3
Q ss_pred CCCcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 107 ~~~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
.....+|+||.|+|++|.|. +|||+|+.+..|||++++.
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~--G~fV~l~~~~~Gll~~sel 64 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAK--GATVELADGVEGYLRASEA 64 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSS--CEEEECSTTCBCCBCTTCC
T ss_pred hhcCCCCCEEEEEEEEEECC--eEEEEECCCCEEEEEHHHc
Confidence 34567999999999999995 8999999999999988764
No 7
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=97.44 E-value=0.0004 Score=64.46 Aligned_cols=37 Identities=35% Similarity=0.527 Sum_probs=33.6
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 109 ~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
...+|+||.|+|++|.|. +|||+|+.+..||+|+++.
T Consensus 4 ~~~vG~iv~G~V~~i~~~--G~FV~l~~~~~Glihisel 40 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAY--GAFVALDEETQGLVHISEV 40 (130)
T ss_dssp CCCTTCEEEEEEEEEETT--EEEEEEETTEEEEEEGGGT
T ss_pred cCCCCCEEEEEEEEEeCC--eEEEEECCCcEEEEEHHHC
Confidence 456899999999999996 9999999999999999874
No 8
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.43 E-value=0.00021 Score=65.46 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred CCcccCCeEEEEEeeecCCcceEEecccC-CcceeeEeccC
Q 005219 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGN-SRPSLMDIKHY 147 (708)
Q Consensus 108 ~~~~vGnIY~GrV~kV~PgmqAAFVDIG~-~k~aFL~~~d~ 147 (708)
....+|+||.|+|++|.| .+|||+|+. ...||||+++.
T Consensus 18 ~~~~vG~iv~G~V~~I~~--fGaFV~l~g~~~~Glvhisel 56 (119)
T 2cqo_A 18 NLPALYTIFQGEVAMVTD--YGAFIKIPGCRKQGLVHRTHM 56 (119)
T ss_dssp CSCCTTCEEEEEEEEEET--TEEEEECTTCSSCEEEEHHHH
T ss_pred cccCCCCEEEEEEEEEeC--ceEEEEECCCcEEEEEEHHHC
Confidence 445689999999999999 599999955 68999999774
No 9
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.34 E-value=0.00069 Score=61.39 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=34.8
Q ss_pred CCCcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 107 ~~~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
.....+|++|.|+|++|.| .+|||+|+.+..||+++++.
T Consensus 25 ~~~~~~G~~~~G~V~~v~~--~G~FV~l~~~~~Glvhisel 63 (115)
T 2khi_A 25 AKRYPEGTKLTGRVTNLTD--YGCFVEIEEGVEGLVHVSEM 63 (115)
T ss_dssp SCSSCSSCEEEEEEEEEET--TEEEEECSTTCEEEEETTSS
T ss_pred hhcCCCCCEEEEEEEEEEC--CEEEEEECCCCEEEEEHHHC
Confidence 3557799999999999999 69999999999999998764
No 10
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=96.31 E-value=0.0097 Score=58.01 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=30.4
Q ss_pred cccCCeEEEEEeeecCCcceEEecccC----------CcceeeEeccC
Q 005219 110 VQCDSVYLGVVTKLVPNMGGAFVNIGN----------SRPSLMDIKHY 147 (708)
Q Consensus 110 ~~vGnIY~GrV~kV~PgmqAAFVDIG~----------~k~aFL~~~d~ 147 (708)
.. |+|+.|+|++|.+ ..|||||+. +..|+||+++.
T Consensus 56 p~-GdiV~G~V~~V~~--~ga~V~I~~v~~~~~~~~~~~~Gll~isei 100 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRN--SIALIEVSSKKGENRGPSNRGIGILHVSNV 100 (179)
T ss_dssp CT-TCEEEEEEEEECS--SEEEEEEEEETTCCSCCTTCEEEEEEGGGT
T ss_pred CC-CCEEEEEEEEEeC--CcEEEEEccccCcccccccCeeEEEEHHHc
Confidence 35 9999999999987 689999988 78888888764
No 11
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=96.30 E-value=0.0068 Score=59.54 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=31.6
Q ss_pred ccCCeEEEEEeeecCCcceEEecc--cCCcceeeEeccC
Q 005219 111 QCDSVYLGVVTKLVPNMGGAFVNI--GNSRPSLMDIKHY 147 (708)
Q Consensus 111 ~vGnIY~GrV~kV~PgmqAAFVDI--G~~k~aFL~~~d~ 147 (708)
.+|.+|.|+|++|.+ -+|||++ +.+..||+|+++.
T Consensus 14 ~~G~iv~G~V~~I~~--fGaFV~L~e~~g~eGLvhiSel 50 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAE--MGAYVSLLEYNNIEGMILLSEL 50 (182)
T ss_dssp CTTCEEEEEEEEECS--SEEEEEETTTTTEEEEEEGGGC
T ss_pred CCCCEEEEEEEEEec--cEEEEEEccCCCcEEEEEHHHC
Confidence 589999999999998 5899999 6789999999875
No 12
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=96.22 E-value=0.011 Score=61.67 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=31.5
Q ss_pred ccCCeEEEEEeeecCCcceEEeccc--CCcceeeEeccC
Q 005219 111 QCDSVYLGVVTKLVPNMGGAFVNIG--NSRPSLMDIKHY 147 (708)
Q Consensus 111 ~vGnIY~GrV~kV~PgmqAAFVDIG--~~k~aFL~~~d~ 147 (708)
.+|++|.|+|++|.+ -+|||+++ .+..||+|+++.
T Consensus 10 ~~Gdiv~G~V~~I~~--fGaFV~L~e~~gieGlIhiSel 46 (275)
T 3aev_A 10 EEGEFVVATVKRIHN--YGAFLELDEYPGKEAFMHISEV 46 (275)
T ss_dssp CTTCEEEEEEEEEET--TEEEEEETTSTTCEEEEEGGGS
T ss_pred CCCCEEEEEEEEEEC--cEEEEEECCCCCeEEEEEHHHc
Confidence 489999999999998 49999998 589999999874
No 13
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=96.10 E-value=0.0083 Score=57.77 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=31.5
Q ss_pred ccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 111 QCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 111 ~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
.+|.+|.|+|++|.+ -+|||++|. ..||+|++..
T Consensus 82 ~~Gev~~G~V~~v~~--fG~FV~l~~-~dglvhis~l 115 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQ--HGFEVQVGP-MKVFVTKHLM 115 (171)
T ss_dssp CTTCEEEEEEEEEET--TEEEEEETT-EEEEEEGGGS
T ss_pred CCCCEEEEEEEEEec--CEEEEEecC-eEEEEEHHHC
Confidence 489999999999999 699999998 9999999874
No 14
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=95.99 E-value=0.01 Score=57.74 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=31.7
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 109 ~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
+..+|.||.|+|++|.+. +|||++|. ..||+|+++.
T Consensus 78 ~~~~Gev~~G~V~~v~~~--G~fV~l~~-~eglvhis~l 113 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEF--GSFVRLGP-LDGLIHVSQI 113 (187)
T ss_dssp CCCTTCEEEEEEEEEETT--EEEEECSS-SEEEEEGGGS
T ss_pred ccCCCCEEEEEEEEEeCc--EEEEEEcC-ccEEEEhHHh
Confidence 356899999999999984 89999987 9999999875
No 15
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=95.82 E-value=0.018 Score=56.17 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=29.2
Q ss_pred cCCeEEEEEeeecCCcceEEecc--cCCcceeeEeccC
Q 005219 112 CDSVYLGVVTKLVPNMGGAFVNI--GNSRPSLMDIKHY 147 (708)
Q Consensus 112 vGnIY~GrV~kV~PgmqAAFVDI--G~~k~aFL~~~d~ 147 (708)
+|.+|.|+|++|.+ -+|||++ +.+..||+|+++.
T Consensus 15 ~G~iv~G~V~~i~~--fGaFV~L~e~~gveGLvhiSel 50 (175)
T 2a19_A 15 IDDIVMVNVQQIAE--MGAYVKLLEYDNIEGMILLSEL 50 (175)
T ss_dssp TTCEEEEEEEEEET--TEEEEEETTTTTCEEEEECC--
T ss_pred CCCEEEEEEEEEec--ceEEEEEcCCCCcEEEEEHHHc
Confidence 89999999999988 5899999 4779999999874
No 16
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=95.47 E-value=0.023 Score=57.21 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=31.6
Q ss_pred ccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 111 QCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 111 ~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
.+|.+|.|+|++|.+ -+|||++|. ..||+|++..
T Consensus 82 ~vGev~~G~V~~vt~--fG~FVelg~-~dGlVhiS~l 115 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQ--HGFEVQVGP-MKVFVTKHLM 115 (215)
T ss_dssp CTTEEEEEEEEEEET--TEEEEECTT-SEEEEEGGGS
T ss_pred CCCCEEEEEEEEEec--ceEEEEecC-cEEEEEHHHC
Confidence 689999999999999 699999998 9999999875
No 17
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=94.81 E-value=0.048 Score=49.33 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=26.4
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeEe
Q 005219 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDI 144 (708)
Q Consensus 109 ~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~ 144 (708)
...+|.+|.|+|++|.+ -+||||||.+..+.|+.
T Consensus 18 ~l~~G~i~~G~V~~v~~--fG~fV~l~~~~~~~l~~ 51 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLED--HGYLVDIGVDGTRAFLP 51 (119)
T ss_dssp TCCTTCEEEEEEEEECS--SEEEEECCCSSCEEEEE
T ss_pred cCCCCCEEEEEEEEEeC--ceEEEEECCCCeEEEEE
Confidence 35689999999999998 48999999444444443
No 18
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.37 E-value=0.24 Score=50.14 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=36.9
Q ss_pred EEeecCCCC--cccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 101 LLLEPVKSN--VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 101 l~iE~~~~~--~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
+.+.+...+ ..+|+|-.|+|+.|.+. .||||||....|+|++.+.
T Consensus 44 v~V~p~~~~y~p~~GDiV~G~V~~v~~~--~a~V~I~~~~~g~l~isev 90 (229)
T 2ba0_A 44 VRVIPLKGRYTPSVGDVVIGIIREVAAN--GWAVDIYSPYQAFLPVSEN 90 (229)
T ss_dssp EEEEECSSSCCCCTTCEEEEEEEEECSS--EEEEECSSSSCEEEEGGGC
T ss_pred EEEEeCCCcccCCCCCEEEEEEEEEeCC--eEEEEeCCCeEEEEEHHHc
Confidence 445554433 37899999999999986 8999999999999998774
No 19
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=94.36 E-value=0.044 Score=52.60 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=30.6
Q ss_pred ccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 111 QCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 111 ~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
.+|.+|.|+|++|.+ -+|||++|... ||+|+++.
T Consensus 80 ~~Gev~~G~V~~v~~--fG~fV~l~~~~-glvhis~l 113 (172)
T 2c35_B 80 FKGEVVDAVVTQVNK--VGLFTEIGPMS-CFISRHSI 113 (172)
T ss_dssp CTTCEEEEEEEEEET--TEEEEEETTEE-EEEEGGGS
T ss_pred CCCCEEEEEEEEEeC--CEEEEEECCEE-EEEEHHHC
Confidence 489999999999998 69999999766 99999874
No 20
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=93.34 E-value=0.2 Score=50.78 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=32.7
Q ss_pred cccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 110 ~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
..+|+|-.|+|++|.+. .||||||..-.|+||+.+.
T Consensus 64 p~~GDiV~G~V~~v~~~--~~~V~I~~~~~g~l~isei 99 (235)
T 2z0s_A 64 PQAGDVVIGLIQSVGIM--NWFVDINSPYVAVLSVQDF 99 (235)
T ss_dssp CCTTCCEEEEEEEECSS--EEEEECSSSSCEEEEHHHH
T ss_pred CCCCCEEEEEEEEEeCC--eEEEEeCCCeEEEEEHHHh
Confidence 47899999999999886 8999999999999998763
No 21
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=92.97 E-value=0.22 Score=49.78 Aligned_cols=26 Identities=15% Similarity=-0.032 Sum_probs=22.4
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccC
Q 005219 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGN 136 (708)
Q Consensus 109 ~~~vGnIY~GrV~kV~PgmqAAFVDIG~ 136 (708)
...+|+|-.|+|++|.+. .|||||+.
T Consensus 78 ~p~vGDvV~G~V~~v~~~--~a~V~I~~ 103 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSR--FAKVHILY 103 (209)
T ss_dssp CCCTTCEEEEEEEEECSS--EEEEEEEE
T ss_pred CCCCCCEEEEEEEEEECc--eEEEEECc
Confidence 457999999999999884 69999963
No 22
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.38 E-value=0.13 Score=49.59 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=31.4
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 109 ~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
+..+|.+|.|+|++|.+ -+|||++|.-. ||+|+++.
T Consensus 81 ~p~~Gev~~G~V~~v~~--fG~FV~l~~~~-glVh~s~l 116 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNK--MGFFANIGPLN-VFVSSHLV 116 (172)
T ss_dssp CCCTTCEEECCCCEEET--TEEECCBTTBC-CEEEGGGS
T ss_pred ccCCCCEEEEEEEEEEc--ceEEEEeCCeE-EEEEHHHC
Confidence 34689999999999998 79999999755 99999875
No 23
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.35 E-value=0.024 Score=66.16 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=0.0
Q ss_pred CCCcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 107 ~~~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
.....+|.||.|+|++|.+ -+|||+|+.+..||+|+++.
T Consensus 622 ~~~~~vG~i~~G~V~~i~~--fGaFVel~~g~eGLvHiSel 660 (723)
T 3cdi_A 622 TAEIEVGRVYTGKVTRIVD--FGAFVAIGGGKEGLVHISQI 660 (723)
T ss_dssp -----------------------------------------
T ss_pred hhhhhcCcEEEEEEEEEec--ceEEEEeCCCceEEEEHHHc
Confidence 3456799999999999998 79999999999999999874
No 24
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=92.33 E-value=0.32 Score=49.88 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=36.9
Q ss_pred EEeecCCC---CcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 101 LLLEPVKS---NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 101 l~iE~~~~---~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
+.+.+... ...+|+|-.|+|++|.+. .||||||..-.|+||+.+.
T Consensus 60 v~V~p~~~~~y~p~~GDiV~G~V~~v~~~--ga~VdI~~~~~GlL~isei 107 (251)
T 2je6_I 60 FEVIPLEGSFYYPKINDIVIGLVEDVEIY--GWVVDIKAPYKAYLPASNL 107 (251)
T ss_dssp EEEEESCCSCCCCCTTCEEEEEEEEECSS--EEEEECSSSSCEEEEHHHH
T ss_pred EEEEECCCcccCCCCCCEEEEEEEEEeCc--eEEEEcCCCeEEEEEHHHh
Confidence 34555443 347899999999999986 8999999999999998763
No 25
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=92.28 E-value=0.18 Score=62.07 Aligned_cols=38 Identities=5% Similarity=0.012 Sum_probs=33.5
Q ss_pred CCcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 108 ~~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
....+|.||.|+|++|.+ -+|||+|+.+..||+|+++.
T Consensus 898 ~~l~~G~iv~G~V~~V~~--fGaFV~L~~gveGLVHiSel 935 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWH--NDIICTTNSEVECVVNAQRH 935 (1219)
T ss_dssp TTSCTTCEEEEEEEEECS--SCEEEECTTSCEEEECTTSS
T ss_pred hhCCCCCEEEEEEEEEec--ceEEEEeCCCceEEEEHHHc
Confidence 345689999999999998 48999999999999998774
No 26
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=91.70 E-value=0.14 Score=44.38 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=30.4
Q ss_pred cccCCeEEEEEeeecCCcceEEecccC--CcceeeEec-cC
Q 005219 110 VQCDSVYLGVVTKLVPNMGGAFVNIGN--SRPSLMDIK-HY 147 (708)
Q Consensus 110 ~~vGnIY~GrV~kV~PgmqAAFVDIG~--~k~aFL~~~-d~ 147 (708)
..+|.+|.|+|+ |.+- +|||+++. +..||+|++ +.
T Consensus 9 ~~vG~~~~G~V~-v~~f--G~FVel~~~~~~eGLvhis~el 46 (88)
T 1luz_A 9 PNAGDVIKGRVY-EKDY--ALYIYLFDYPHFEAILAESVKM 46 (88)
T ss_dssp CCTTCEEEEEEE-EETT--EEEEEETTCTTSEEEEGGGSSC
T ss_pred CCCCCEEEEEEE-EEcc--EEEEEECCCCCeEEEEEeeHHh
Confidence 358999999999 9884 89999974 789999998 75
No 27
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=91.48 E-value=0.082 Score=62.32 Aligned_cols=37 Identities=35% Similarity=0.491 Sum_probs=33.1
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 109 ~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
...+|.+|.|+|++|.+ -+|||+||....||+|+++.
T Consensus 651 ~l~vG~iv~G~V~~V~~--fGaFV~l~~~~eGLVhiS~L 687 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTN--FGAFVDIGVHQDGLVHISAL 687 (785)
T ss_dssp TCCTTCBCCCEEEEEET--TEEEEECSSSSEEEEETTTS
T ss_pred hcCCCCEEEEEEEEEec--CCeEEEeCCCcEEEEEHHHc
Confidence 35689999999999988 58999999999999999875
No 28
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=90.93 E-value=0.33 Score=52.10 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=29.6
Q ss_pred cccCCeEEEEEeeecCCcceEEecccCCcceeeEecc
Q 005219 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKH 146 (708)
Q Consensus 110 ~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d 146 (708)
...|.|..|+|.++.++ .+|||+| +-.|||+.++
T Consensus 132 ~~~GeIV~G~V~ri~~~--~v~VDlG-k~EgiLp~sE 165 (344)
T 1hh2_P 132 ELKGTVTTAEVIRVMGE--WADIRIG-KLETRLPKKE 165 (344)
T ss_dssp CCTTCEEEEEEEEECSS--EEEEEET-TEEEEEEGGG
T ss_pred hcCCCEEEEEEEEEecC--cEEEEeC-CeEEEEeHHH
Confidence 34799999999999987 6999999 7899998765
No 29
>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} SCOP: d.14.1.2
Probab=90.88 E-value=0.76 Score=41.78 Aligned_cols=53 Identities=26% Similarity=0.364 Sum_probs=37.4
Q ss_pred eeeecCCChH-HHHHHHHHH----HhhC----CCCeeEEEeecCCCCCHHHHHHHHHHHHHH
Q 005219 333 IGVSRKITGV-ERTRLKVIA----KTLQ----PEGFGLTIRTVAAGHSLEELQKDLEGLLST 385 (708)
Q Consensus 333 igiSrKI~~~-eR~rLk~i~----~~l~----p~~~GvIiRTaA~g~~~eeL~~Dl~~L~~~ 385 (708)
+.||||+... .|+|+|.++ .... +.++=+|.|..+..++.++|.+++..|+..
T Consensus 48 ~sVsKKvg~AV~RNRiKR~lRE~~R~~~~~l~~~d~Vviar~~~~~~~~~~l~~~l~~ll~k 109 (119)
T 1a6f_A 48 LSVSKKIGNAVMRNRIKRLIRQAFLEEKERLKEKDYIIIARKPASQLTYEETKKSLQHLFRK 109 (119)
T ss_dssp EEECSTTCCHHHHHHHHHHHHHHHHHHTTTBCSSEEEEEECGGGTTCCHHHHHHHHHHHHHH
T ss_pred EEEecccCcchhHhHHHHHHHHHHHHhhccCCCCCEEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 5679999764 577765443 3222 224557778889999999999999877654
No 30
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=89.69 E-value=1 Score=43.36 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=31.6
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 109 ~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
+..+|.+|-|+|++|.+ -+|||++|. ..||+|+++.
T Consensus 78 ~p~~Gev~~G~V~~v~~--~G~fv~l~~-~~glvh~s~l 113 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDN--YGVFVNLGP-MDGLVHISQI 113 (180)
T ss_dssp CCCTTCEEEEEEEEEET--TEEEEECSS-SEEEEEGGGS
T ss_pred eccCCCEEEEEEeeecc--ceEEEEECC-ccceEEeeec
Confidence 34689999999999998 499999986 8999999875
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=89.47 E-value=0.067 Score=62.51 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=0.3
Q ss_pred eEEEEEEECCEEEEEE------------eecCCCCcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 87 MQRIAVLEDEKLVELL------------LEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 87 e~RvAvlEdgkL~El~------------iE~~~~~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
...|-+-+||.+.=+- ++..-....+|.||.|+|++|.+ -+|||+|+.+..||+|+++.
T Consensus 600 g~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~--fGaFVel~~g~eGLvHiSel 670 (726)
T 4aid_A 600 GAKVDINDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVD--FGAFVNFFGAKDGLVHVSQI 670 (726)
T ss_dssp --------------CCSCHHHHHHHHHC---------------------------------------------
T ss_pred CCceeEECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEec--cEEEEEECCCcEEEEEHHHc
Confidence 3466666777552111 22222345689999999999987 68999999999999999874
No 32
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=88.32 E-value=0.36 Score=50.35 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=33.3
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccC-CcceeeEeccC
Q 005219 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGN-SRPSLMDIKHY 147 (708)
Q Consensus 109 ~~~vGnIY~GrV~kV~PgmqAAFVDIG~-~k~aFL~~~d~ 147 (708)
...+|.+..|+|++|.+. -+||||+|. ++.+|+|+++.
T Consensus 66 ~~~~G~~~~g~V~~v~~~-~GaFVdiG~~~~d~lvp~sel 104 (285)
T 3go5_A 66 TATQDQFGWGRVTEVRKD-LGVFVDTGLPDKEIVVSLDIL 104 (285)
T ss_dssp CSCSSSCEEEEEEEEETT-TEEEEECSCTTCCEEEEGGGS
T ss_pred cccCCCEEEEEEEEEccC-ceEEEEECCCCcEEEEEHHHC
Confidence 457899999999999843 389999999 79999999985
No 33
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=86.83 E-value=1.1 Score=48.54 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=28.5
Q ss_pred cccCCeEEEEEee----ecCCcceEEecccC---CcceeeEecc
Q 005219 110 VQCDSVYLGVVTK----LVPNMGGAFVNIGN---SRPSLMDIKH 146 (708)
Q Consensus 110 ~~vGnIY~GrV~k----V~PgmqAAFVDIG~---~k~aFL~~~d 146 (708)
...|.|..|+|.+ +.++ .+|||+|. +-.|+|+.++
T Consensus 128 ~r~GeIVtG~V~r~~~~v~~~--~v~VdLG~~~~k~EgiLP~~E 169 (366)
T 1k0r_A 128 TREGEIVAGVIQRDSRANARG--LVVVRIGTETKASEGVIPAAE 169 (366)
T ss_dssp CCTTCEEEEEEECCHHHHHTT--CEEEEECCSSSCEEEEECGGG
T ss_pred hcCCCEEEEEEEEccccccCC--eEEEEeCCCccceEEEEcHHH
Confidence 3589999999999 9987 69999997 3677776543
No 34
>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit, hydrolase; NMR {Staphylococcus aureus} SCOP: d.14.1.2
Probab=86.58 E-value=0.75 Score=41.64 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=37.6
Q ss_pred eeeecCCChH-HHHHHHHHH----Hh----hCCCCeeEEEeecCCCCCHHHHHHHHHHHHHHH
Q 005219 333 IGVSRKITGV-ERTRLKVIA----KT----LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386 (708)
Q Consensus 333 igiSrKI~~~-eR~rLk~i~----~~----l~p~~~GvIiRTaA~g~~~eeL~~Dl~~L~~~W 386 (708)
+.||||+... .|+|+|.++ .. +.+..+=+|.|..+..++.++|.+++..|....
T Consensus 47 ~sVsKKvg~AV~RNRiKR~lRE~~R~~~~~l~~~d~Vviar~~~~~~~~~~l~~~l~~ll~k~ 109 (117)
T 1d6t_A 47 ISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEHVLKIA 109 (117)
T ss_dssp EECCSSSCSTTHHHHHHHHHHHHHHHGGGTCCSSCEEEEECSGGGGCCTTHHHHHHTTHHHHH
T ss_pred EEEecccCcchHHhHHHHHHHHHHHHhhccCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 5679999764 577665443 22 222355677788899999999999988776543
No 35
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=86.47 E-value=0.13 Score=62.15 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=0.0
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 109 ~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
...+|.||.|+|++|.+ -+|||+|+.+..|++|+++.
T Consensus 902 ~l~~G~iv~G~V~~V~~--fGaFV~L~~gveGLVHiSel 938 (1030)
T 3psf_A 902 TFFKGSIIPVRVERFWH--NDIICTTNSEVECVVNAQRH 938 (1030)
T ss_dssp ---------------------------------------
T ss_pred HhcCCCEEEEEEEEEcc--CeEEEEeCCCcEEEEEHHHc
Confidence 34689999999999988 58999999999999998764
No 36
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=85.44 E-value=1.8 Score=39.20 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=38.6
Q ss_pred ceeeecC-CChH-HHHHHHHHHHh----hCC--C--CeeEEEeecCCCCCHHHHHHHHHHHHHHH
Q 005219 332 RIGVSRK-ITGV-ERTRLKVIAKT----LQP--E--GFGLTIRTVAAGHSLEELQKDLEGLLSTW 386 (708)
Q Consensus 332 ~igiSrK-I~~~-eR~rLk~i~~~----l~p--~--~~GvIiRTaA~g~~~eeL~~Dl~~L~~~W 386 (708)
++.|||| +... .|+|+|.++.+ ..+ . ++=+|.|..+...+.++|.+++..|....
T Consensus 48 G~sVsKK~vg~AV~RNRiKR~lRe~~R~~~~~l~~~d~Vviar~~~~~~~~~~l~~~l~~ll~~~ 112 (119)
T 2ljp_A 48 GLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALSEALEKLWRRH 112 (119)
T ss_dssp CCBCCTTTSCCHHHHHHHHHHHHHHHTTCTTTSCSSEECEEECTTGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEEeCccCCchhHHhHHHHHHHHHHHHHHhcCCCceEEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 3567999 8764 68777665533 222 1 34478888888999999999998776654
No 37
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=81.94 E-value=2.8 Score=43.23 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=27.3
Q ss_pred cccCCeEEEEEee----ecCCcceEEecccC---CcceeeEec
Q 005219 110 VQCDSVYLGVVTK----LVPNMGGAFVNIGN---SRPSLMDIK 145 (708)
Q Consensus 110 ~~vGnIY~GrV~k----V~PgmqAAFVDIG~---~k~aFL~~~ 145 (708)
...|.|..|.|.+ +.++ .+|||+|. .-.|+|+.+
T Consensus 5 ~r~GeIVtG~V~r~~~~v~~~--~ViVdlG~~~~k~EgiLP~~ 45 (251)
T 2asb_A 5 TREGEIVAGVIQRDSRANARG--LVVVRIGTETKASEGVIPAA 45 (251)
T ss_dssp CCTTCEEEEEEECCHHHHHTT--CEEEEECSSSSCEEEEECGG
T ss_pred hcCCCEEEEEEEEccccccCC--eEEEEeCCCCcceEEEEcHH
Confidence 4689999999999 7876 59999997 467777543
No 38
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=80.14 E-value=3 Score=43.43 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=34.7
Q ss_pred cCCCCcccCCeEEEEEeeecCCcceEEe-cccCCcceeeEecc
Q 005219 105 PVKSNVQCDSVYLGVVTKLVPNMGGAFV-NIGNSRPSLMDIKH 146 (708)
Q Consensus 105 ~~~~~~~vGnIY~GrV~kV~PgmqAAFV-DIG~~k~aFL~~~d 146 (708)
.......+|++..|+|.++.|- +||| +++.+-.||+|.++
T Consensus 145 ~~~~~~~~G~~V~g~V~~i~~~--G~fV~~i~~g~~Glih~SE 185 (285)
T 3go5_A 145 RPAYNNMQNQNWPAIVYRLKLS--GTFVYLPENNMLGFIHPSE 185 (285)
T ss_dssp CCCCSCCTTCEEEEEEEEEETT--EEEEEETTTTEEEEECGGG
T ss_pred hhhhhCCCCCEEEEEEEEEeCC--cEEEEEeCCCeEEEEEHHH
Confidence 3445677999999999999986 9999 99999999998765
No 39
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=76.19 E-value=0.57 Score=55.04 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=18.9
Q ss_pred CCcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 108 ~~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
....+|.+|.|+|++|.+ -+|||++..+..||+|+++.
T Consensus 663 ~~~~vG~i~~G~V~~i~~--fGaFV~l~~g~eGLvHiSel 700 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTT--FGAFVSLLPGKDGLLHISQI 700 (757)
T ss_dssp ----------CBEEECC---CSCEECCC---CCCCC----
T ss_pred hhcccccEEEEEEEEccc--cEEEEEEcCCcEEEEEhHHh
Confidence 345689999999999988 58999999999999999875
No 40
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=75.85 E-value=3 Score=37.67 Aligned_cols=52 Identities=27% Similarity=0.350 Sum_probs=35.1
Q ss_pred eeeecCCChH-HHHHHHHHH----HhhC---CCCe--eEEEeecCC----CCCHHHHHHHHHHHHH
Q 005219 333 IGVSRKITGV-ERTRLKVIA----KTLQ---PEGF--GLTIRTVAA----GHSLEELQKDLEGLLS 384 (708)
Q Consensus 333 igiSrKI~~~-eR~rLk~i~----~~l~---p~~~--GvIiRTaA~----g~~~eeL~~Dl~~L~~ 384 (708)
+.||||+... .|+|+|.++ .... +.++ =+|.|..+. ..+.++|.+++..|+.
T Consensus 49 ~sVsKKvg~AV~RNRiKR~lRE~~R~~~~~l~~g~d~Vviar~~~~~~~~~~~~~~l~~~l~~ll~ 114 (118)
T 1nz0_A 49 IVVKRKFGKATRRNKLKRWVREIFRRNKGVIPKGFDIVVIPRKKLSEEFERVDFWTVREKLLNLLK 114 (118)
T ss_dssp ECCCGGGCSHHHHHHHHHHHHHHHHHHTTTSCSSEEEEEEECHHHHHHGGGSCHHHHHHHHHHHHT
T ss_pred EEEecccCChhHHhHHHHHHHHHHHHHHhhcCCCcEEEEEecccccccccCCCHHHHHHHHHHHHH
Confidence 5679999764 577765543 3332 3343 356676776 8999999999887754
No 41
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=72.51 E-value=5.9 Score=34.88 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=33.4
Q ss_pred CCcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 108 ~~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
.....|.+|.|.|+++.+ -+|||++..+..|++|++++
T Consensus 57 ~~l~~Ge~V~g~V~~i~~--fG~fv~l~~~~eGlvhis~i 94 (101)
T 2bh8_A 57 GNPQQGDRVEGKIKSITD--FGIFIGLDGGIDGLVHLSDI 94 (101)
T ss_dssp CCCCTTCEEEEEEEECCS--EEEEECTTSCEEEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEeCC--cEEEEEcCCCceEEEEHHHC
Confidence 345689999999999998 59999998889999999875
No 42
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=59.59 E-value=9.2 Score=32.79 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=33.5
Q ss_pred CCeEEEEEeeecCCcceEEecccCCcceeeEeccCC
Q 005219 113 DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148 (708)
Q Consensus 113 GnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~~ 148 (708)
|.-|+|.|.+|...-+.+||-.+.+-.....++|+.
T Consensus 40 GlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi~ 75 (79)
T 2m0o_A 40 GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 75 (79)
T ss_dssp SCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTBC
T ss_pred CCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeeccc
Confidence 889999999999999999999999999999888863
No 43
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=57.87 E-value=10 Score=36.86 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=31.3
Q ss_pred cccCCeEEEEEeeecCCcceEEecccC-CcceeeEecc
Q 005219 110 VQCDSVYLGVVTKLVPNMGGAFVNIGN-SRPSLMDIKH 146 (708)
Q Consensus 110 ~~vGnIY~GrV~kV~PgmqAAFVDIG~-~k~aFL~~~d 146 (708)
..+|++=.|+|+.+.+ ..+|||||. .-.|+|++.+
T Consensus 5 P~~gDvViG~V~~v~~--~~~~VdI~~~~~~a~L~~s~ 40 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFS--DSYKVSLQNFSSSVSLSYMA 40 (175)
T ss_dssp CCTTCEEEEEEEEECS--SEEEEESSTTSCCEEEETTS
T ss_pred CCCcCEEEEEEEEEEC--cEEEEEECCCCccEEEEHHH
Confidence 4589999999999977 789999999 8999999875
No 44
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.08 E-value=12 Score=30.78 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=33.2
Q ss_pred CCeEEEEEeeecCCcceEEecccCCcceeeEeccCC
Q 005219 113 DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148 (708)
Q Consensus 113 GnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~~ 148 (708)
|.-|+|+|++|.-.-+.+||-.+.+-.....++|++
T Consensus 21 GlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~ 56 (63)
T 2e5q_A 21 GLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQ 56 (63)
T ss_dssp SCEEEEEECCCCSTTSEEEEEETTSCEEEEEGGGEE
T ss_pred CCEEEEEEEEEecCCCEEEEEEccCceeEEEeeccc
Confidence 889999999999999999999999999888888864
No 45
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.80 E-value=16 Score=30.52 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=33.2
Q ss_pred CCeEEEEEeeecCCcceEEecccCCcceeeEeccCC
Q 005219 113 DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148 (708)
Q Consensus 113 GnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~~ 148 (708)
|.-|+|+|++|.-.-+.+||-.+.+-.-....+|+.
T Consensus 23 GlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~ 58 (68)
T 2e5p_A 23 GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 58 (68)
T ss_dssp SSEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEE
T ss_pred CcEEEeEEEEEecCCcEEEEEEccCCeeeeeeeccc
Confidence 899999999999999999999999988888888864
No 46
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=49.13 E-value=17 Score=38.37 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=34.9
Q ss_pred EeecCCC--CcccCCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 102 LLEPVKS--NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 102 ~iE~~~~--~~~vGnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
.+.+... ...+|+|-.|+|++|.+ ..||||||....|++++++.
T Consensus 83 sV~p~~~rY~P~vGDvViG~Vt~V~~--~~a~VdI~s~~~~~l~iS~v 128 (308)
T 2nn6_H 83 CVKALKTRYIGEVGDIVVGRITEVQQ--KRWKVETNSRLDSVLLLSSM 128 (308)
T ss_dssp EEEESSCCCCCCSSBCCCEEEEEEET--TEEEEECSSSSCEEEESSCC
T ss_pred EEeeCCCccCCCCCCEEEEEEEEEeC--ceEEEEECCCcCCceechhh
Confidence 3444433 34789999999999976 46999999999999988763
No 47
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=43.49 E-value=86 Score=26.77 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=42.0
Q ss_pred CeEEEEECHHHHHHHHcCchhhHHHHHhhcCCeEEEEeCCCCCCcCeEEEEeec
Q 005219 613 PRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTRGAFEVIPYTD 666 (708)
Q Consensus 613 ~~~~l~v~p~v~~~l~~~~~~~l~~Le~~~~~~I~i~~d~~l~~~~~~i~~~~~ 666 (708)
..+.+.|+++.+..+.......+..|+++++.+|.|..+.......-.++.++.
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G 68 (94)
T 1x4m_A 15 AVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG 68 (94)
T ss_dssp EEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE
T ss_pred EEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe
Confidence 467899999999999988889999999999999998766543333444555553
No 48
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=36.64 E-value=43 Score=27.24 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=32.1
Q ss_pred CCeEEEEEeeecCCcceEEecccCCcceeeEeccC
Q 005219 113 DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (708)
Q Consensus 113 GnIY~GrV~kV~PgmqAAFVDIG~~k~aFL~~~d~ 147 (708)
|--|+|+|.+|.+.-+.+||-.+.+-......+|+
T Consensus 17 G~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi 51 (58)
T 4hcz_A 17 GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDI 51 (58)
T ss_dssp SCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGE
T ss_pred CCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHc
Confidence 88999999999999999999999988888888875
No 49
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=31.17 E-value=1.6e+02 Score=24.50 Aligned_cols=54 Identities=11% Similarity=0.037 Sum_probs=41.6
Q ss_pred eEEEEECHHHHHHHHcCchhhHHHHHhhcCCeEEEEeCCCCCC-cCeEEEEeecC
Q 005219 614 RFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARGFTR-GAFEVIPYTDD 667 (708)
Q Consensus 614 ~~~l~v~p~v~~~l~~~~~~~l~~Le~~~~~~I~i~~d~~l~~-~~~~i~~~~~~ 667 (708)
.+.+.|+++.+..+.+.....+..|++.+|.+|.|..+..+.. .....+.+...
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~ 58 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS 58 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC
Confidence 5688999999999999888999999999999999887644322 23455555544
No 50
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=26.08 E-value=93 Score=37.67 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=29.3
Q ss_pred CCeEEEEEeeecCCcceEEecccC-CcceeeEeccC
Q 005219 113 DSVYLGVVTKLVPNMGGAFVNIGN-SRPSLMDIKHY 147 (708)
Q Consensus 113 GnIY~GrV~kV~PgmqAAFVDIG~-~k~aFL~~~d~ 147 (708)
|.+|-|+|+.|.+ .++||.+.. +-.|++|+++.
T Consensus 887 ge~~~g~V~~V~~--~G~fV~L~~~giEGlVhis~L 920 (977)
T 2wp8_J 887 ESTETGYVIKVFN--NGIVVLVPKFGVEGLIRLDNL 920 (977)
T ss_dssp TCEEEEEEEEECS--SEEEEECTTTCCEEEEEGGGT
T ss_pred ceEEEEEEEEEcC--CeEEEEEcCCCeEEEEEeccc
Confidence 7899999999987 589999986 78999999875
No 51
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=24.83 E-value=77 Score=29.09 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCCCChhhHHHHHHHHHHHHh
Q 005219 523 KAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVE 574 (708)
Q Consensus 523 et~lktNLEAA~EIARQLRLRnIGGIIVIDFIDM~~~~~r~~V~~~Lk~alk 574 (708)
+.+-+.|.+||.+|.++.+- ++.----||+-.|.-++-...|...|.++..
T Consensus 29 ~~~~~~~~~Aa~~If~~~N~-~~~~~~~LDLHGl~v~EA~~~L~~fL~~a~~ 79 (135)
T 2vkc_A 29 QKMKEANHLAAIEIFEKVNA-SLLPQNVLDLHGLHVDEALEHLMRVLEKKTE 79 (135)
T ss_dssp --CCSHHHHHHHHHHHHHHH-HHGGGTEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-cCCCCceEEeCCCcHHHHHHHHHHHHHHHHH
Confidence 34556899999999998654 3444468999999999999999888888753
No 52
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=23.96 E-value=1.5e+02 Score=24.60 Aligned_cols=41 Identities=5% Similarity=-0.031 Sum_probs=35.7
Q ss_pred CeEEEEECHHHHHHHHcCchhhHHHHHhhcCCeEEEEeCCC
Q 005219 613 PRFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVARG 653 (708)
Q Consensus 613 ~~~~l~v~p~v~~~l~~~~~~~l~~Le~~~~~~I~i~~d~~ 653 (708)
....+.|+++.+..+-......+..|++++|.+|.|..+..
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~ 54 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS 54 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCC
Confidence 35788999999999998888999999999999998876544
No 53
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=21.99 E-value=63 Score=26.21 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=34.6
Q ss_pred eEEEEECHHHHHHHHcCchhhHHHHHhhcCCeEEEEeCC
Q 005219 614 RFILRVDHHMCNYLTSGKRTRLAVLSSSLKAWILLKVAR 652 (708)
Q Consensus 614 ~~~l~v~p~v~~~l~~~~~~~l~~Le~~~~~~I~i~~d~ 652 (708)
...+.++|+...++-+.+.+.+..|.+++|++|.|-.+.
T Consensus 6 ~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g 44 (71)
T 1vig_A 6 YVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS 44 (71)
T ss_dssp EEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC
T ss_pred EEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC
Confidence 578999999999999988899999999999999885543
No 54
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=20.97 E-value=70 Score=36.71 Aligned_cols=35 Identities=11% Similarity=0.277 Sum_probs=31.1
Q ss_pred ccCC--eEEEEEeeecCCcceEEecc-cCCcceeeEeccC
Q 005219 111 QCDS--VYLGVVTKLVPNMGGAFVNI-GNSRPSLMDIKHY 147 (708)
Q Consensus 111 ~vGn--IY~GrV~kV~PgmqAAFVDI-G~~k~aFL~~~d~ 147 (708)
.+|. +|-|+|++|.+ .++||.+ ..+-.||+|+++.
T Consensus 557 ~vGe~~~f~g~V~~V~~--~G~fV~L~~~gieGlVhis~l 594 (644)
T 2id0_A 557 KAGTDTRFAAEIVDISR--GGMRVRLVDNGAIAFIPAPFL 594 (644)
T ss_dssp GTTSCCCEEEEEEEEET--TEEEEEETTTCCEEEEEGGGT
T ss_pred ccCCCceEEEEEEEEeC--CceEEEEcCCcEEEEEEchhc
Confidence 5788 99999999998 7899999 5788999999775
No 55
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=20.97 E-value=2.8e+02 Score=29.46 Aligned_cols=151 Identities=15% Similarity=0.082 Sum_probs=80.2
Q ss_pred CceeeeecCCchhhhhhhhcCCCccEEEEcCHHHHHHHHHHHHhhCCCcCCceeeccCC----------CCcccccCHH-
Q 005219 408 VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR----------IPLFDKFNIE- 476 (708)
Q Consensus 408 ~P~LLy~e~~~~~r~lRD~~~~~v~~IiVDd~~~y~~i~~~l~~~~p~~~~~v~~y~~~----------~plF~~y~Ie- 476 (708)
++.+++........-++..+..++..+.||+.+..+.+.+......+...--+++-.+. .....+||+.
T Consensus 102 ~~~i~~~g~~k~~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~~~~~~~~~~tg~~~sRfG~~~ 181 (425)
T 2qgh_A 102 PYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGE 181 (425)
T ss_dssp GGGEEECCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCH
T ss_pred hhHEEEcCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCcccccCCCCCCCcCCH
Confidence 46688876543444455556567878999999988888887765433322122221110 0114677763
Q ss_pred HHHHHHhCCceeCCCCcEEEEecccceEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-------cccCCCcE
Q 005219 477 EEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELR-------LRDIGGII 549 (708)
Q Consensus 477 ~qIe~al~r~V~L~sGG~LVIE~TEALtvIDVNSGk~~~~~~~~~eet~lktNLEAA~EIARQLR-------LRnIGGII 549 (708)
+++..++..--.+++ |- +.-|=..-|.. ..+.+ .+.-.++.+.+++.+|+ +.|+||-+
T Consensus 182 ~e~~~l~~~~~~~~~---l~------l~Gl~~H~gs~----~~~~~--~~~~~~~~~~~~~~~l~~~g~~~~~l~~GGG~ 246 (425)
T 2qgh_A 182 KEALEMFLWAKKSAF---LE------PVSVHFHIGSQ----LLDLE--PIIEASQKVAKIAKSLIALGIDLRFFDVGGGI 246 (425)
T ss_dssp HHHHHHHHHHHHCSS---EE------EEEEECCCBSS----BCCHH--HHHHHHHHHHHHHHHHHHTTCCCCEEECCCCB
T ss_pred HHHHHHHHHHHhCCC---cc------EEEEEEECCCC----CCCHH--HHHHHHHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 244444443223332 11 11122222321 11333 24456677777777764 56899888
Q ss_pred EEEcCCCCChhhHHHHHHHHHHHHh
Q 005219 550 VVDFIDMADDSNKRLVYEEVKKAVE 574 (708)
Q Consensus 550 VIDFIDM~~~~~r~~V~~~Lk~alk 574 (708)
-|++-+.. .-+-....+.++..+.
T Consensus 247 ~i~y~~~~-~~~~~~~~~~v~~~i~ 270 (425)
T 2qgh_A 247 GVSYENEE-TIKLYDYAQGILNALQ 270 (425)
T ss_dssp CCCTTSCC-CCCHHHHHHHHHHHTT
T ss_pred CcCCCCCC-CCCHHHHHHHHHHHHh
Confidence 77773221 1233455677777765
Done!