Query 005222
Match_columns 708
No_of_seqs 389 out of 3045
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 20:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 1E-125 2E-130 939.2 58.0 602 2-675 37-644 (663)
2 KOG0103 Molecular chaperones H 100.0 1E-114 3E-119 919.2 57.5 667 1-698 1-670 (727)
3 PTZ00009 heat shock 70 kDa pro 100.0 9E-104 2E-108 900.6 74.1 602 1-674 4-614 (653)
4 PRK13410 molecular chaperone D 100.0 4E-103 8E-108 891.1 71.6 612 1-692 2-623 (668)
5 PRK13411 molecular chaperone D 100.0 1E-100 2E-105 874.4 74.2 592 1-674 1-601 (653)
6 PTZ00400 DnaK-type molecular c 100.0 7E-101 1E-105 875.9 71.8 586 2-672 42-636 (663)
7 PRK00290 dnaK molecular chaper 100.0 3E-99 6E-104 863.9 75.1 587 1-674 1-597 (627)
8 PLN03184 chloroplast Hsp70; Pr 100.0 2.2E-99 5E-104 863.5 73.2 589 2-673 40-635 (673)
9 PTZ00186 heat shock 70 kDa pre 100.0 1E-98 2E-103 850.4 72.9 589 2-673 28-624 (657)
10 CHL00094 dnaK heat shock prote 100.0 4.6E-98 1E-102 851.2 73.7 590 2-674 3-599 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 1.6E-97 3E-102 847.6 73.8 586 2-672 1-593 (595)
12 KOG0104 Molecular chaperones G 100.0 1.2E-97 3E-102 789.7 59.9 695 2-706 23-775 (902)
13 KOG0101 Molecular chaperones H 100.0 4E-98 9E-103 804.8 51.0 604 1-675 7-615 (620)
14 TIGR01991 HscA Fe-S protein as 100.0 3.6E-95 8E-100 821.9 73.6 578 3-670 1-581 (599)
15 PRK05183 hscA chaperone protei 100.0 1.1E-93 2.5E-98 811.1 72.3 578 2-672 20-599 (616)
16 PF00012 HSP70: Hsp70 protein; 100.0 4.2E-94 9E-99 828.3 65.6 595 3-674 1-602 (602)
17 KOG0102 Molecular chaperones m 100.0 2.9E-91 6.2E-96 719.3 45.0 593 2-674 28-627 (640)
18 PRK01433 hscA chaperone protei 100.0 2.9E-88 6.3E-93 759.6 69.2 553 2-673 20-579 (595)
19 COG0443 DnaK Molecular chapero 100.0 8E-87 1.7E-91 743.3 59.5 569 2-674 6-578 (579)
20 PRK11678 putative chaperone; P 100.0 1.6E-55 3.4E-60 478.4 37.5 337 3-380 2-448 (450)
21 PRK13928 rod shape-determining 100.0 5.7E-39 1.2E-43 341.5 33.7 307 4-380 6-324 (336)
22 PRK13929 rod-share determining 100.0 2.8E-38 6E-43 335.1 31.1 305 3-377 6-324 (335)
23 PRK13927 rod shape-determining 100.0 1.2E-35 2.5E-40 316.7 30.5 305 3-379 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 3E-35 6.4E-40 312.8 31.0 305 4-379 5-327 (333)
25 PRK13930 rod shape-determining 100.0 5E-34 1.1E-38 304.5 33.4 308 3-380 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 7.6E-32 1.6E-36 278.6 24.3 304 3-378 3-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 8.2E-30 1.8E-34 252.0 27.8 309 3-381 8-333 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 6.7E-29 1.5E-33 249.4 20.1 200 115-375 39-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 1.2E-26 2.7E-31 237.2 27.6 202 115-377 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 4.2E-22 9.2E-27 215.0 24.6 194 151-376 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 7.4E-21 1.6E-25 207.6 28.8 196 153-379 168-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 2E-16 4.3E-21 168.0 27.6 206 140-380 158-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.7 5.7E-16 1.2E-20 167.7 18.3 234 117-379 76-347 (371)
34 COG4820 EutJ Ethanolamine util 99.7 2.6E-16 5.7E-21 144.5 9.3 196 120-376 76-271 (277)
35 smart00268 ACTIN Actin. ACTIN 99.6 5.2E-15 1.1E-19 160.4 15.5 297 2-379 2-347 (373)
36 PRK13917 plasmid segregation p 99.6 1.5E-13 3.3E-18 145.8 24.5 209 140-382 115-339 (344)
37 PTZ00280 Actin-related protein 99.5 6E-12 1.3E-16 137.9 25.2 206 138-356 103-337 (414)
38 PF00022 Actin: Actin; InterP 99.3 1.2E-11 2.6E-16 135.2 15.6 309 2-380 5-368 (393)
39 PTZ00452 actin; Provisional 99.3 2E-10 4.3E-15 123.8 22.5 214 137-378 100-348 (375)
40 PF11104 PilM_2: Type IV pilus 99.3 6E-11 1.3E-15 126.6 17.6 182 151-377 136-339 (340)
41 PTZ00004 actin-2; Provisional 99.3 2.3E-10 4.9E-15 123.9 21.8 214 137-378 101-351 (378)
42 PTZ00281 actin; Provisional 99.3 1.5E-10 3.2E-15 125.1 19.8 215 137-379 101-350 (376)
43 TIGR01175 pilM type IV pilus a 99.3 3.5E-10 7.5E-15 121.5 21.9 165 150-359 142-310 (348)
44 TIGR03739 PRTRC_D PRTRC system 99.3 2.6E-10 5.7E-15 120.5 20.1 208 136-377 101-318 (320)
45 PTZ00466 actin-like protein; P 99.2 8.9E-10 1.9E-14 118.9 21.7 214 137-378 106-353 (380)
46 COG4972 PilM Tfp pilus assembl 99.0 1.6E-07 3.4E-12 94.5 25.2 164 153-359 151-315 (354)
47 PF06406 StbA: StbA protein; 98.9 1.9E-08 4.1E-13 106.1 15.9 173 166-374 141-316 (318)
48 TIGR00241 CoA_E_activ CoA-subs 98.9 3.3E-08 7.2E-13 100.6 16.4 169 169-375 73-247 (248)
49 KOG0679 Actin-related protein 98.9 1.8E-07 3.9E-12 95.4 20.9 116 116-245 86-202 (426)
50 PRK10719 eutA reactivating fac 98.6 1.5E-07 3.3E-12 100.3 11.0 158 139-344 90-268 (475)
51 COG5277 Actin and related prot 98.6 1.1E-06 2.4E-11 95.6 17.7 98 137-245 106-204 (444)
52 TIGR03192 benz_CoA_bzdQ benzoy 98.6 9.3E-06 2E-10 82.6 22.5 47 333-379 241-288 (293)
53 PF07520 SrfB: Virulence facto 98.5 2E-05 4.3E-10 91.1 25.4 329 47-381 331-836 (1002)
54 COG1924 Activator of 2-hydroxy 98.4 7.3E-06 1.6E-10 84.3 16.7 179 168-379 210-390 (396)
55 TIGR03286 methan_mark_15 putat 98.4 2.3E-05 5E-10 82.9 20.8 46 333-378 357-402 (404)
56 PRK10331 L-fuculokinase; Provi 98.2 0.00014 3E-09 81.4 20.8 84 297-383 357-440 (470)
57 TIGR02261 benz_CoA_red_D benzo 98.1 0.00086 1.9E-08 67.5 22.0 44 334-377 214-262 (262)
58 COG1070 XylB Sugar (pentulose 98.1 0.00011 2.4E-09 82.7 17.2 81 297-381 369-450 (502)
59 COG4457 SrfB Uncharacterized p 98.0 0.00097 2.1E-08 72.8 20.8 82 294-380 743-847 (1014)
60 PRK13317 pantothenate kinase; 97.9 0.0044 9.5E-08 63.7 24.8 48 331-378 222-273 (277)
61 TIGR01314 gntK_FGGY gluconate 97.9 0.0047 1E-07 69.8 26.2 52 331-383 401-452 (505)
62 PF08841 DDR: Diol dehydratase 97.8 0.00013 2.8E-09 72.0 9.9 189 161-377 106-329 (332)
63 KOG0676 Actin and related prot 97.7 0.0011 2.4E-08 69.9 15.1 193 138-356 100-315 (372)
64 PF06277 EutA: Ethanolamine ut 97.6 0.00087 1.9E-08 72.1 12.7 88 140-234 88-178 (473)
65 TIGR02259 benz_CoA_red_A benzo 97.4 0.0024 5.1E-08 67.1 13.5 178 169-377 249-432 (432)
66 KOG0797 Actin-related protein 97.4 0.0013 2.8E-08 70.0 11.2 122 110-244 195-322 (618)
67 PF02782 FGGY_C: FGGY family o 96.9 0.0011 2.4E-08 64.9 4.5 48 331-379 149-196 (198)
68 KOG0677 Actin-related protein 96.8 0.059 1.3E-06 52.8 15.4 222 136-382 100-364 (389)
69 PRK15027 xylulokinase; Provisi 96.6 0.0074 1.6E-07 67.9 9.0 84 297-383 355-438 (484)
70 COG1069 AraB Ribulose kinase [ 96.3 0.041 8.9E-07 60.0 12.0 182 195-383 269-482 (544)
71 TIGR01315 5C_CHO_kinase FGGY-f 96.3 0.011 2.5E-07 67.3 8.4 86 297-383 409-494 (541)
72 COG4819 EutA Ethanolamine util 96.3 0.035 7.6E-07 56.4 10.4 88 140-234 90-180 (473)
73 PLN02669 xylulokinase 96.2 0.012 2.5E-07 67.2 8.1 77 298-379 416-492 (556)
74 PF01869 BcrAD_BadFG: BadF/Bad 96.2 0.8 1.7E-05 47.1 20.7 69 306-377 198-271 (271)
75 KOG0680 Actin-related protein 96.0 0.21 4.6E-06 50.8 14.5 102 137-243 93-198 (400)
76 TIGR02628 fuculo_kin_coli L-fu 96.0 0.022 4.9E-07 63.6 8.9 84 297-383 361-444 (465)
77 TIGR01234 L-ribulokinase L-rib 95.8 0.03 6.5E-07 63.8 9.1 83 297-383 404-487 (536)
78 PRK00047 glpK glycerol kinase; 95.8 0.022 4.7E-07 64.4 7.6 52 331-383 403-454 (498)
79 PLN02295 glycerol kinase 95.8 0.033 7.2E-07 63.1 8.9 52 331-383 412-463 (512)
80 TIGR01311 glycerol_kin glycero 95.7 0.02 4.4E-07 64.5 7.1 52 331-383 399-450 (493)
81 TIGR01312 XylB D-xylulose kina 95.7 0.029 6.4E-07 63.1 8.1 52 331-383 390-441 (481)
82 TIGR02627 rhamnulo_kin rhamnul 95.6 0.045 9.7E-07 61.0 9.2 82 298-384 356-438 (454)
83 PRK04123 ribulokinase; Provisi 95.5 0.028 6.1E-07 64.3 7.4 80 299-382 409-489 (548)
84 PTZ00294 glycerol kinase-like 95.5 0.033 7.1E-07 63.0 7.8 52 331-383 406-457 (504)
85 PRK10640 rhaB rhamnulokinase; 95.4 0.058 1.3E-06 60.4 9.3 81 299-384 345-426 (471)
86 PF14450 FtsA: Cell division p 95.4 0.034 7.4E-07 49.6 6.0 48 196-243 1-53 (120)
87 PRK10939 autoinducer-2 (AI-2) 95.3 0.061 1.3E-06 61.1 8.8 81 299-383 379-460 (520)
88 PRK10854 exopolyphosphatase; P 95.2 0.42 9E-06 54.1 15.4 77 153-238 99-176 (513)
89 PRK11031 guanosine pentaphosph 95.1 0.44 9.6E-06 53.6 15.0 77 153-238 94-171 (496)
90 KOG2517 Ribulose kinase and re 95.1 0.068 1.5E-06 58.7 8.0 53 330-383 413-465 (516)
91 KOG2531 Sugar (pentulose and h 95.1 0.057 1.2E-06 57.3 7.0 54 325-379 436-489 (545)
92 PF01968 Hydantoinase_A: Hydan 95.0 0.05 1.1E-06 56.6 6.7 65 308-375 218-283 (290)
93 PF14574 DUF4445: Domain of un 94.9 0.93 2E-05 49.2 15.9 84 292-376 289-374 (412)
94 TIGR00555 panK_eukar pantothen 94.7 1.2 2.7E-05 45.6 15.6 45 331-375 230-278 (279)
95 KOG0681 Actin-related protein 94.6 0.42 9.2E-06 52.0 12.1 121 116-245 95-216 (645)
96 COG1548 Predicted transcriptio 94.5 0.17 3.6E-06 49.8 8.2 73 122-212 76-148 (330)
97 COG0248 GppA Exopolyphosphatas 94.0 0.82 1.8E-05 50.9 13.5 57 153-212 91-147 (492)
98 PF02541 Ppx-GppA: Ppx/GppA ph 91.9 0.51 1.1E-05 49.1 7.7 74 156-238 77-151 (285)
99 PRK09604 UGMP family protein; 91.0 20 0.00043 38.1 18.7 48 331-378 254-307 (332)
100 PF07318 DUF1464: Protein of u 90.8 3.6 7.9E-05 43.1 12.4 52 331-383 260-319 (343)
101 PTZ00288 glucokinase 1; Provis 90.8 4.7 0.0001 43.9 13.9 19 2-20 27-45 (405)
102 smart00842 FtsA Cell division 90.6 1.8 4E-05 41.7 9.8 30 151-180 157-186 (187)
103 PRK09585 anmK anhydro-N-acetyl 90.4 1.6 3.6E-05 46.5 9.8 67 310-379 268-338 (365)
104 KOG0681 Actin-related protein 90.1 0.27 5.9E-06 53.4 3.6 66 314-379 539-614 (645)
105 PLN02666 5-oxoprolinase 90.0 2.3 5.1E-05 52.8 12.0 75 298-375 454-530 (1275)
106 TIGR00744 ROK_glcA_fam ROK fam 89.7 15 0.00033 38.6 16.7 93 114-211 33-140 (318)
107 PRK14878 UGMP family protein; 88.0 26 0.00056 37.1 16.8 41 331-371 241-287 (323)
108 TIGR03723 bact_gcp putative gl 87.9 15 0.00033 38.6 14.9 44 331-374 259-308 (314)
109 TIGR03706 exo_poly_only exopol 87.5 2.3 5E-05 44.5 8.5 111 118-238 54-164 (300)
110 COG2192 Predicted carbamoyl tr 86.4 61 0.0013 36.3 21.1 80 298-381 256-337 (555)
111 COG0554 GlpK Glycerol kinase [ 86.3 2.1 4.6E-05 46.5 7.3 82 299-384 372-454 (499)
112 COG4012 Uncharacterized protei 85.3 43 0.00094 33.6 17.9 90 144-247 186-278 (342)
113 PTZ00297 pantothenate kinase; 85.1 41 0.00088 43.1 18.7 299 4-375 1042-1442(1452)
114 smart00732 YqgFc Likely ribonu 85.0 0.81 1.8E-05 38.8 3.0 21 1-21 1-21 (99)
115 PF03652 UPF0081: Uncharacteri 82.6 1.4 3E-05 40.1 3.5 22 1-22 1-22 (135)
116 PF08735 DUF1786: Putative pyr 81.8 14 0.0003 37.2 10.4 98 134-239 111-210 (254)
117 COG2377 Predicted molecular ch 81.5 14 0.0003 39.1 10.6 54 327-380 286-344 (371)
118 PF03702 UPF0075: Uncharacteri 81.5 3.1 6.8E-05 44.5 6.2 71 304-379 260-337 (364)
119 TIGR03281 methan_mark_12 putat 81.1 9.3 0.0002 39.2 9.0 85 297-383 222-315 (326)
120 COG5026 Hexokinase [Carbohydra 81.0 7.2 0.00016 41.9 8.5 18 2-19 76-93 (466)
121 PLN02920 pantothenate kinase 1 75.7 56 0.0012 35.2 13.3 48 330-377 296-350 (398)
122 COG0533 QRI7 Metal-dependent p 75.1 31 0.00067 36.3 11.0 53 298-355 229-285 (342)
123 PRK00976 hypothetical protein; 72.1 23 0.00049 37.2 9.2 51 331-383 263-315 (326)
124 PF00370 FGGY_N: FGGY family o 72.1 3.5 7.5E-05 41.6 3.3 19 3-21 2-20 (245)
125 COG0145 HyuA N-methylhydantoin 71.9 4.3 9.3E-05 47.1 4.3 42 167-212 255-296 (674)
126 PRK00109 Holliday junction res 70.1 4.4 9.4E-05 37.0 3.1 21 1-21 4-24 (138)
127 KOG1385 Nucleoside phosphatase 69.7 15 0.00033 39.2 7.3 78 110-212 152-231 (453)
128 PRK03011 butyrate kinase; Prov 69.2 15 0.00033 39.3 7.5 45 331-375 295-343 (358)
129 COG0816 Predicted endonuclease 69.1 4.9 0.00011 36.7 3.2 21 1-21 2-22 (141)
130 cd06007 R3H_DEXH_helicase R3H 69.0 14 0.00029 28.2 5.1 30 139-168 16-45 (59)
131 TIGR03722 arch_KAE1 universal 67.7 1.7E+02 0.0036 30.9 19.0 41 332-372 243-289 (322)
132 PF02543 CmcH_NodU: Carbamoylt 67.1 12 0.00026 40.2 6.2 81 297-382 132-216 (360)
133 PF00349 Hexokinase_1: Hexokin 66.7 22 0.00047 34.9 7.5 55 191-247 60-118 (206)
134 PRK07058 acetate kinase; Provi 66.7 22 0.00049 38.2 8.0 46 307-356 298-344 (396)
135 TIGR00329 gcp_kae1 metallohydr 65.3 86 0.0019 32.8 12.2 25 331-355 258-282 (305)
136 TIGR00143 hypF [NiFe] hydrogen 64.2 12 0.00027 43.9 6.1 48 331-378 658-711 (711)
137 cd02640 R3H_NRF R3H domain of 62.6 23 0.00049 27.1 5.2 42 126-168 5-46 (60)
138 PRK00039 ruvC Holliday junctio 62.3 6.5 0.00014 37.0 2.8 19 1-19 2-20 (164)
139 PTZ00107 hexokinase; Provision 62.2 2.6E+02 0.0057 31.2 23.2 40 145-184 189-230 (464)
140 PTZ00340 O-sialoglycoprotein e 62.1 2.2E+02 0.0048 30.3 16.9 39 312-355 249-287 (345)
141 PTZ00294 glycerol kinase-like 61.5 7.3 0.00016 44.1 3.5 22 1-22 1-23 (504)
142 PLN02362 hexokinase 61.4 21 0.00046 40.1 7.0 34 150-183 205-240 (509)
143 KOG2708 Predicted metalloprote 61.3 72 0.0016 31.4 9.5 61 309-375 237-300 (336)
144 PF14450 FtsA: Cell division p 61.2 12 0.00025 33.2 4.1 20 3-22 1-20 (120)
145 PRK10939 autoinducer-2 (AI-2) 61.2 6.6 0.00014 44.6 3.1 19 3-21 5-23 (520)
146 PF15290 Syntaphilin: Golgi-lo 60.9 54 0.0012 33.1 8.8 20 626-645 89-109 (305)
147 COG2971 Predicted N-acetylgluc 58.5 2.3E+02 0.005 29.4 18.9 64 309-379 227-291 (301)
148 PLN02914 hexokinase 57.7 64 0.0014 36.1 9.8 58 149-213 204-263 (490)
149 cd00529 RuvC_resolvase Hollida 57.6 83 0.0018 29.2 9.3 30 195-224 1-30 (154)
150 COG4296 Uncharacterized protei 57.4 29 0.00063 30.8 5.6 23 637-659 90-112 (156)
151 PLN02405 hexokinase 56.3 36 0.00078 38.1 7.7 57 149-212 204-262 (497)
152 TIGR02628 fuculo_kin_coli L-fu 56.3 9 0.00019 42.9 3.1 20 2-21 2-21 (465)
153 TIGR03123 one_C_unchar_1 proba 55.9 7.8 0.00017 40.6 2.3 19 194-212 128-146 (318)
154 COG1940 NagC Transcriptional r 55.9 1.4E+02 0.0031 31.1 12.0 37 164-204 107-143 (314)
155 COG2441 Predicted butyrate kin 55.8 91 0.002 31.7 9.4 53 331-383 273-336 (374)
156 PLN02377 3-ketoacyl-CoA syntha 54.6 29 0.00063 38.9 6.6 73 302-374 164-240 (502)
157 PRK02224 chromosome segregatio 54.4 1.2E+02 0.0027 36.9 12.7 46 571-616 145-190 (880)
158 PRK15027 xylulokinase; Provisi 54.2 9.6 0.00021 42.9 2.9 19 3-21 2-20 (484)
159 PRK13318 pantothenate kinase; 52.5 14 0.0003 37.7 3.5 20 3-22 2-21 (258)
160 PRK13321 pantothenate kinase; 51.6 15 0.00032 37.5 3.5 19 3-21 2-20 (256)
161 PLN02295 glycerol kinase 51.4 12 0.00025 42.6 3.0 18 3-20 2-19 (512)
162 TIGR01234 L-ribulokinase L-rib 51.2 14 0.00031 42.1 3.6 18 2-19 2-19 (536)
163 TIGR01315 5C_CHO_kinase FGGY-f 51.0 13 0.00029 42.4 3.4 19 3-21 2-20 (541)
164 PLN02596 hexokinase-like 50.3 69 0.0015 35.9 8.6 57 150-213 205-263 (490)
165 PRK04123 ribulokinase; Provisi 50.2 14 0.00031 42.2 3.5 17 3-19 5-21 (548)
166 PF06160 EzrA: Septation ring 50.1 2.2E+02 0.0048 32.7 13.0 120 572-694 112-240 (560)
167 PLN02939 transferase, transfer 49.7 1.5E+02 0.0032 36.0 11.6 123 572-698 237-369 (977)
168 TIGR02259 benz_CoA_red_A benzo 48.5 15 0.00033 39.4 3.0 20 3-22 4-23 (432)
169 KOG4302 Microtubule-associated 48.1 1.1E+02 0.0024 35.4 9.8 119 571-707 156-274 (660)
170 PF08006 DUF1700: Protein of u 48.0 54 0.0012 31.3 6.6 58 606-671 5-63 (181)
171 PRK00047 glpK glycerol kinase; 47.9 16 0.00035 41.3 3.4 19 3-21 7-25 (498)
172 COG3426 Butyrate kinase [Energ 47.8 43 0.00094 34.1 5.8 47 329-375 294-344 (358)
173 TIGR01311 glycerol_kin glycero 47.4 17 0.00036 41.1 3.4 20 2-21 2-21 (493)
174 KOG3133 40 kDa farnesylated pr 46.2 63 0.0014 32.4 6.6 82 602-691 142-228 (267)
175 cd02646 R3H_G-patch R3H domain 45.1 46 0.001 25.1 4.5 41 124-167 3-43 (58)
176 PRK09605 bifunctional UGMP fam 44.6 51 0.0011 37.6 6.8 51 331-381 245-301 (535)
177 KOG0103 Molecular chaperones H 44.2 60 0.0013 37.2 6.9 64 599-671 652-725 (727)
178 cd02639 R3H_RRM R3H domain of 43.9 43 0.00094 25.6 4.1 30 139-168 17-46 (60)
179 cd00529 RuvC_resolvase Hollida 43.8 19 0.00042 33.5 2.7 17 3-19 2-18 (154)
180 KOG1369 Hexokinase [Carbohydra 43.7 5E+02 0.011 28.9 14.9 66 142-214 183-251 (474)
181 cd02641 R3H_Smubp-2_like R3H d 43.6 77 0.0017 24.2 5.5 30 139-168 17-46 (60)
182 PF13941 MutL: MutL protein 43.0 19 0.00041 39.8 2.8 29 327-355 381-410 (457)
183 PRK10869 recombination and rep 42.9 5.7E+02 0.012 29.3 15.3 60 576-638 245-308 (553)
184 PRK04778 septation ring format 41.9 3.5E+02 0.0075 31.2 13.0 120 572-694 116-244 (569)
185 PF04614 Pex19: Pex19 protein 41.5 1.2E+02 0.0025 30.8 8.1 51 623-674 136-187 (248)
186 PF14574 DUF4445: Domain of un 41.3 88 0.0019 34.2 7.6 54 303-356 55-108 (412)
187 PLN03173 chalcone synthase; Pr 41.0 89 0.0019 34.0 7.7 51 309-359 101-152 (391)
188 PF03962 Mnd1: Mnd1 family; I 40.9 3.4E+02 0.0074 26.1 12.1 20 569-588 56-75 (188)
189 PRK13331 pantothenate kinase; 40.0 29 0.00064 35.1 3.5 22 1-22 7-28 (251)
190 PLN03170 chalcone synthase; Pr 39.9 80 0.0017 34.5 7.1 54 306-359 102-156 (401)
191 PLN02854 3-ketoacyl-CoA syntha 39.6 70 0.0015 36.1 6.6 54 305-358 183-237 (521)
192 KOG0797 Actin-related protein 38.8 14 0.0003 40.5 1.0 50 332-381 527-591 (618)
193 PRK05082 N-acetylmannosamine k 38.6 46 0.001 34.4 4.9 69 309-378 212-287 (291)
194 PF04848 Pox_A22: Poxvirus A22 37.9 40 0.00087 30.9 3.6 20 1-20 1-20 (143)
195 PRK03918 chromosome segregatio 37.5 5.1E+02 0.011 31.5 14.5 44 623-668 656-699 (880)
196 PLN03172 chalcone synthase fam 37.4 97 0.0021 33.8 7.3 56 303-358 95-151 (393)
197 PLN02902 pantothenate kinase 37.4 2.6E+02 0.0056 33.5 10.9 48 330-378 345-400 (876)
198 PLN02669 xylulokinase 36.5 31 0.00067 39.5 3.4 20 2-21 9-28 (556)
199 PRK10869 recombination and rep 36.2 4.2E+02 0.0091 30.4 12.4 126 571-696 201-357 (553)
200 PRK09557 fructokinase; Reviewe 36.1 57 0.0012 33.9 5.1 44 163-211 96-139 (301)
201 TIGR03185 DNA_S_dndD DNA sulfu 35.9 6.5E+02 0.014 29.5 14.3 67 572-642 370-437 (650)
202 PRK13310 N-acetyl-D-glucosamin 35.6 68 0.0015 33.4 5.6 44 163-211 96-139 (303)
203 PLN03168 chalcone synthase; Pr 34.7 98 0.0021 33.7 6.8 56 303-358 94-150 (389)
204 PRK00409 recombination and DNA 34.5 4.2E+02 0.0091 31.9 12.5 114 571-694 498-621 (782)
205 PF02075 RuvC: Crossover junct 34.5 2.5E+02 0.0055 25.8 8.6 29 196-224 1-29 (149)
206 PF02801 Ketoacyl-synt_C: Beta 34.2 56 0.0012 28.7 4.0 48 309-356 22-71 (119)
207 PF02075 RuvC: Crossover junct 34.2 21 0.00046 33.0 1.3 17 3-19 1-17 (149)
208 PHA02557 22 prohead core prote 33.8 3.2E+02 0.0068 27.7 9.3 82 576-670 142-224 (271)
209 PF05957 DUF883: Bacterial pro 33.8 2.6E+02 0.0057 23.3 7.9 66 575-645 5-72 (94)
210 PRK13320 pantothenate kinase; 33.6 44 0.00095 33.7 3.6 22 1-22 2-23 (244)
211 TIGR00250 RNAse_H_YqgF RNAse H 33.4 28 0.00061 31.3 2.0 17 4-20 1-17 (130)
212 KOG0994 Extracellular matrix g 32.7 8.3E+02 0.018 30.4 13.7 21 139-159 999-1019(1758)
213 PF06705 SF-assemblin: SF-asse 32.6 5.3E+02 0.011 25.9 11.4 106 599-706 92-201 (247)
214 COG4012 Uncharacterized protei 32.6 1.1E+02 0.0025 30.8 6.0 72 195-273 2-96 (342)
215 TIGR02707 butyr_kinase butyrat 32.5 48 0.001 35.5 3.9 44 331-374 293-340 (351)
216 PRK00292 glk glucokinase; Prov 32.3 40 0.00088 35.4 3.3 49 162-211 89-144 (316)
217 PRK13326 pantothenate kinase; 31.9 47 0.001 33.9 3.5 21 2-22 7-27 (262)
218 TIGR00634 recN DNA repair prot 31.6 8.4E+02 0.018 28.0 15.1 63 575-642 251-317 (563)
219 PF06705 SF-assemblin: SF-asse 31.3 5.5E+02 0.012 25.8 13.4 95 600-697 151-246 (247)
220 KOG1794 N-Acetylglucosamine ki 31.2 1.2E+02 0.0027 31.1 6.1 49 334-382 266-319 (336)
221 KOG1369 Hexokinase [Carbohydra 31.2 3.6E+02 0.0078 30.0 10.2 27 191-217 83-109 (474)
222 PF00349 Hexokinase_1: Hexokin 30.7 47 0.001 32.6 3.1 32 151-182 169-203 (206)
223 KOG0104 Molecular chaperones G 30.5 3.8E+02 0.0083 31.4 10.4 60 622-681 774-844 (902)
224 KOG0678 Actin-related protein 30.0 6.8E+02 0.015 26.4 12.8 100 139-243 108-208 (415)
225 PRK13324 pantothenate kinase; 30.0 53 0.0011 33.5 3.5 20 3-22 2-21 (258)
226 PF00480 ROK: ROK family; Int 29.8 1.4E+02 0.0031 28.0 6.3 89 112-211 30-134 (179)
227 TIGR01069 mutS2 MutS2 family p 29.6 5.9E+02 0.013 30.6 12.6 45 571-615 493-538 (771)
228 KOG4001 Axonemal dynein light 29.3 5.3E+02 0.011 24.9 12.4 98 589-702 154-257 (259)
229 PRK00039 ruvC Holliday junctio 29.2 4.9E+02 0.011 24.4 10.9 148 195-381 3-156 (164)
230 PLN02192 3-ketoacyl-CoA syntha 27.9 1.6E+02 0.0034 33.3 7.0 56 303-358 169-225 (511)
231 PF11593 Med3: Mediator comple 27.9 72 0.0016 33.7 4.0 43 634-678 9-51 (379)
232 PF02970 TBCA: Tubulin binding 27.5 2E+02 0.0044 24.0 6.0 33 624-656 57-89 (90)
233 PRK00180 acetate kinase A/prop 26.9 1.3E+02 0.0029 32.7 6.1 46 308-356 303-349 (402)
234 KOG0994 Extracellular matrix g 26.9 6.6E+02 0.014 31.1 11.6 25 592-616 1461-1485(1758)
235 TIGR01319 glmL_fam conserved h 26.9 42 0.00091 36.9 2.2 61 151-211 194-266 (463)
236 COG4575 ElaB Uncharacterized c 26.8 4.1E+02 0.0089 22.8 9.8 72 625-699 11-82 (104)
237 COG5026 Hexokinase [Carbohydra 26.3 69 0.0015 34.8 3.6 30 192-221 73-103 (466)
238 PRK06840 hypothetical protein; 26.3 1.9E+02 0.0041 30.6 7.2 48 310-357 53-103 (339)
239 PF11458 Mistic: Membrane-inte 25.4 1.7E+02 0.0038 23.2 4.7 22 623-644 3-24 (84)
240 PF13941 MutL: MutL protein 25.3 1.6E+02 0.0034 32.8 6.3 47 196-242 2-49 (457)
241 COG4575 ElaB Uncharacterized c 25.1 4.4E+02 0.0096 22.6 8.7 69 575-648 15-85 (104)
242 KOG2517 Ribulose kinase and re 24.3 64 0.0014 36.1 3.1 17 3-19 8-24 (516)
243 PLN00130 succinate dehydrogena 24.2 11 0.00023 35.2 -2.4 18 3-20 59-76 (213)
244 PRK09698 D-allose kinase; Prov 24.1 1.8E+02 0.0038 30.2 6.3 43 163-211 104-146 (302)
245 COG2410 Predicted nuclease (RN 24.0 1.2E+02 0.0026 28.3 4.3 31 1-31 1-32 (178)
246 TIGR02627 rhamnulo_kin rhamnul 23.9 38 0.00083 37.7 1.4 19 598-616 360-378 (454)
247 PF00815 Histidinol_dh: Histid 23.6 1.2E+02 0.0025 33.1 4.8 48 137-184 137-185 (412)
248 PF10211 Ax_dynein_light: Axon 23.6 6.7E+02 0.014 24.1 12.0 48 651-698 136-188 (189)
249 TIGR01319 glmL_fam conserved h 23.5 3.3E+02 0.0071 30.2 8.2 50 199-249 1-50 (463)
250 PF15188 CCDC-167: Coiled-coil 23.3 4.2E+02 0.0091 21.9 6.8 52 603-663 9-64 (85)
251 KOG4593 Mitotic checkpoint pro 23.2 1.1E+03 0.023 27.6 12.1 111 581-691 203-317 (716)
252 PRK10719 eutA reactivating fac 23.1 2.2E+02 0.0047 31.6 6.7 81 312-394 66-153 (475)
253 COG4020 Uncharacterized protei 23.0 83 0.0018 31.4 3.2 53 329-383 266-321 (332)
254 TIGR01312 XylB D-xylulose kina 22.8 47 0.001 37.2 1.8 17 4-20 1-17 (481)
255 COG0233 Frr Ribosome recycling 22.8 6.9E+02 0.015 24.0 10.2 60 570-638 105-165 (187)
256 TIGR03545 conserved hypothetic 22.7 7.4E+02 0.016 28.4 11.2 99 573-679 162-260 (555)
257 COG1940 NagC Transcriptional r 22.5 3.5E+02 0.0075 28.1 8.3 53 192-244 4-56 (314)
258 PRK14878 UGMP family protein; 22.5 2E+02 0.0043 30.4 6.3 63 308-371 42-110 (323)
259 TIGR03722 arch_KAE1 universal 22.5 2E+02 0.0043 30.3 6.4 63 308-371 43-111 (322)
260 PRK09604 UGMP family protein; 22.3 1.8E+02 0.0038 30.9 5.9 65 308-373 49-119 (332)
261 PF15043 CNRIP1: CB1 cannabino 22.2 6.5E+02 0.014 23.5 9.5 71 422-492 29-117 (161)
262 TIGR00067 glut_race glutamate 22.1 1.8E+02 0.004 29.4 5.8 41 331-374 172-212 (251)
263 PRK11415 hypothetical protein; 21.9 4.2E+02 0.009 21.2 7.2 60 579-643 4-63 (74)
264 TIGR02168 SMC_prok_B chromosom 21.9 7.2E+02 0.016 31.2 12.4 46 571-616 151-196 (1179)
265 TIGR00671 baf pantothenate kin 21.8 83 0.0018 31.7 3.1 19 4-22 2-20 (243)
266 TIGR00329 gcp_kae1 metallohydr 21.7 2.3E+02 0.0049 29.6 6.5 66 307-373 45-116 (305)
267 cd06572 Histidinol_dh Histidin 21.3 1.9E+02 0.0042 31.3 5.8 48 137-184 123-171 (390)
268 cd00520 RRF Ribosome recycling 21.3 7.2E+02 0.016 23.7 10.0 60 570-638 99-159 (179)
269 TIGR03254 oxalate_oxc oxalyl-C 21.1 5.9E+02 0.013 29.1 10.4 62 138-207 18-79 (554)
270 PLN00415 3-ketoacyl-CoA syntha 21.0 2.2E+02 0.0048 31.6 6.4 45 314-358 138-183 (466)
271 PLN02914 hexokinase 20.9 2.4E+02 0.0052 31.6 6.8 24 192-215 93-116 (490)
272 cd00327 cond_enzymes Condensin 20.9 4.5E+02 0.0097 26.0 8.5 44 314-357 11-56 (254)
273 PLN02596 hexokinase-like 20.8 3.6E+02 0.0078 30.3 8.0 25 192-216 94-118 (490)
274 PF12401 DUF3662: Protein of u 20.4 5.6E+02 0.012 22.4 7.7 86 237-331 7-95 (116)
275 PF03309 Pan_kinase: Type III 20.4 99 0.0021 30.2 3.3 20 3-22 1-20 (206)
276 PF09286 Pro-kuma_activ: Pro-k 20.3 1.4E+02 0.0031 27.1 4.2 46 601-646 26-75 (143)
277 TIGR03723 bact_gcp putative gl 20.2 2.4E+02 0.0051 29.7 6.3 66 307-373 46-117 (314)
278 PRK12879 3-oxoacyl-(acyl carri 20.1 2E+02 0.0042 30.2 5.8 47 309-358 222-268 (325)
279 PF05378 Hydant_A_N: Hydantoin 20.0 91 0.002 29.7 2.9 18 4-21 2-19 (176)
280 COG0497 RecN ATPase involved i 20.0 1.3E+03 0.029 26.3 13.2 126 571-696 201-358 (557)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-126 Score=939.23 Aligned_cols=602 Identities=30% Similarity=0.521 Sum_probs=574.0
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHHH
Q 005222 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVVQ 81 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v~ 81 (708)
+|||||||||||||+++++|.++|+.|++|+|.|||+|+|.+++|++|+.|+++...||+||+++.|||||+.++++.+|
T Consensus 37 tvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq 116 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQ 116 (663)
T ss_pred eEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCceeeecCCCCeEEEEEec-CceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 005222 82 KDLMVLPFESCESPDGGISIKLKYL-GETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (708)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 160 (708)
.+.++|||+++.. ++.++++|... |+.+.|+|+++++|+|.++++.|+.++|.++.++|+||||||++.||+++++|.
T Consensus 117 ~Dik~~Pfkvv~k-~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAG 195 (663)
T KOG0100|consen 117 KDIKFLPFKVVNK-DGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAG 195 (663)
T ss_pred hhhhcCceEEEcC-CCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccc
Confidence 9999999999987 68899999887 668999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHH
Q 005222 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (708)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 240 (708)
.+|||+++++||||+|||++||+++. ....++||||+||||||||++.+++|.|+|+++.||.++||.+||+++++
T Consensus 196 tIAgLnV~RIiNePTaAAIAYGLDKk----~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 196 TIAGLNVVRIINEPTAAAIAYGLDKK----DGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVME 271 (663)
T ss_pred eeccceEEEeecCccHHHHHhccccc----CCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHH
Confidence 99999999999999999999999886 46789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHH
Q 005222 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRK 320 (708)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~ 320 (708)
|+...++++++.|++.+.+++.+|+++||++|+.||.+.++.+.|+++++|.||+-++||..||++..++|.....++++
T Consensus 272 ~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~k 351 (663)
T KOG0100|consen 272 YFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQK 351 (663)
T ss_pred HHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHh-CCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccceee
Q 005222 321 ALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLF-GREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYSI 399 (708)
Q Consensus 321 ~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f-g~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~~~i 399 (708)
+|+++++.+.+|+.|+||||++|||.||++|+++| |++.++.+|||||||+|||.+|..+|+.....++++.|++|+++
T Consensus 352 vl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pLtl 431 (663)
T KOG0100|consen 352 VLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLTL 431 (663)
T ss_pred HHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeeccccc
Confidence 99999999999999999999999999999999999 79999999999999999999999999998899999999999999
Q ss_pred EEEecCCCcccCCCcceEEecCCCCcCceEEEEeeec--cceEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCCccee
Q 005222 400 GISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRS--SLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENAKV 477 (708)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 477 (708)
||++.+ +.|..|||||+.+|++|+..|++. ++-++.+..++|++....+|++||.|.++||||+|+|.|+|
T Consensus 432 GIETvG-------GVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqI 504 (663)
T KOG0100|consen 432 GIETVG-------GVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQI 504 (663)
T ss_pred eeeeec-------ceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccE
Confidence 999987 589999999999999999999874 44455665557777667999999999999999999999999
Q ss_pred EEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccccccc
Q 005222 478 KVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDKAG 557 (708)
Q Consensus 478 ~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 557 (708)
+|+|.+|.||+|+|++.+ |.++
T Consensus 505 EVtFevDangiL~VsAeD----------------------------------------------------------Kgtg 526 (663)
T KOG0100|consen 505 EVTFEVDANGILQVSAED----------------------------------------------------------KGTG 526 (663)
T ss_pred EEEEEEccCceEEEEeec----------------------------------------------------------cCCC
Confidence 999999999999999963 4456
Q ss_pred eeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhh--hhccCCCHHHHHHHHHHH
Q 005222 558 RRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS--TYRSFASDQEREGISRSL 635 (708)
Q Consensus 558 ~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~--~~~~~~~~~e~~~l~~~l 635 (708)
.+..|+|++.. ++||+++|++|....++|+..|+..+++.++||+||+|.|.+++.+.+ .+-..+++++++.+...+
T Consensus 527 ~~~kitItNd~-~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av 605 (663)
T KOG0100|consen 527 KKEKITITNDK-GRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAV 605 (663)
T ss_pred CcceEEEecCC-CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHH
Confidence 66788999887 789999999999999999999999999999999999999999999975 377899999999999999
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhh
Q 005222 636 QETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDG 675 (708)
Q Consensus 636 ~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 675 (708)
++..+||+.+ .+|++++|.+|+++|..+++||....+..
T Consensus 606 ~e~~eWL~~n-~~a~~Ee~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 606 EEALEWLESN-QDASKEEFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 79999999999999999999999987764
No 2
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-114 Score=919.19 Aligned_cols=667 Identities=51% Similarity=0.789 Sum_probs=622.8
Q ss_pred CeEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHH
Q 005222 1 MSVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v 80 (708)
|+|+|||||..+|.+|+++.+++++|.|+.|+|.||++|+|.+++|++|.+|..+..+|+.|++..+||++|+.|+||.+
T Consensus 1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 005222 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (708)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 160 (708)
+.+.+++|+.++..+||.+++++.|.|+.+.++++++++|+|.+|+..|+..+..++.+|||+||+||++.||+++.+||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeecchHHHHHhccccccCCC--CCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHH
Q 005222 161 SIAGLRPLRLIHDCTATALGYGIYKTDFA--NGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVL 238 (708)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~--~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 238 (708)
++|||++++|++|.+|+|++||++++++| ..++.+|+++|+|++++.+|++.|..|.+.++++.+|.++||++||+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 99999999999999999999999999998 5668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHH
Q 005222 239 FGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPC 318 (708)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i 318 (708)
.+|++.+|+.+|++++..+++++.||+..||++|+.||+|...+++|++++++.|++..|+|++||++|.|+++++..++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeecccee
Q 005222 319 RKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYS 398 (708)
Q Consensus 319 ~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~~~ 398 (708)
..+|+++++..+||+.|.+|||+||+|.|+++|.++||+++.+++|.|||||+|||++||++||.|++|+|.++|+.||+
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~pys 400 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYS 400 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeeccceEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCC-Cccee
Q 005222 399 IGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNS-ENAKV 477 (708)
Q Consensus 399 i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~-~~~~i 477 (708)
|.+.|.....++ +....+||+|.++|.+|.+||.+.++|++.++|.+.+.+| .....|++|+++++.+... +..++
T Consensus 401 Is~~w~~~~ed~--~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp-~~~~kI~~~~i~~v~~~~~ge~skV 477 (727)
T KOG0103|consen 401 ISLRWVKQGEDG--GSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLP-YPKPKIEKWTITGVTPSEDGEFSKV 477 (727)
T ss_pred EEEEeccccccC--CCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccC-CCCCceeeEEecccccCccccccce
Confidence 999999865454 3568999999999999999999999999999999877777 6778999999999998754 66899
Q ss_pred EEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccccccc
Q 005222 478 KVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDKAG 557 (708)
Q Consensus 478 ~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 557 (708)
+|.+++|.+|+++|..+.++++.++++ ++... ++.+.+. .. .+. ...++.|++.
T Consensus 478 Kvkvr~n~~Gi~~i~sA~~~e~~~vee-v~~~~------~e~~~~~----------~~--------~~~-~~~~~~k~kv 531 (727)
T KOG0103|consen 478 KVKVRLNEHGIDTIESATLIEDIEVEE-VPEEP------MEYDDAA----------KM--------LER-IAPAENKKKV 531 (727)
T ss_pred eEEEEEcCccceeeecceeecccchhc-cccch------hhhhcch----------hh--------hhh-hcccccccee
Confidence 999999999999999999999877664 33210 0000000 00 000 0001125567
Q ss_pred eeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH
Q 005222 558 RRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQE 637 (708)
Q Consensus 558 ~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e 637 (708)
+...|++.....++|+..+++.+++++.+|..+|+...++.+++|+||+|||+||++|.+.|.+|++++++++|...|++
T Consensus 532 k~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~ 611 (727)
T KOG0103|consen 532 KKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTD 611 (727)
T ss_pred eeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHH
Confidence 78899998887678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcC
Q 005222 638 TEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGS 698 (708)
Q Consensus 638 ~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~ 698 (708)
+++|||++|++.++..|..||.+|+++++ ..|+.+++.||++++.+.+.++..++.+.+
T Consensus 612 ~E~wlyedGed~~k~~Y~~kl~elk~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~~~ 670 (727)
T KOG0103|consen 612 TEEWLYEDGEDQTKAVYVAKLEELKKLGD--KKRFDENEERPKAFDELGKKIQEIRKAIES 670 (727)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999998887544
No 3
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=8.9e-104 Score=900.60 Aligned_cols=602 Identities=30% Similarity=0.514 Sum_probs=553.0
Q ss_pred CeEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHH
Q 005222 1 MSVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v 80 (708)
+.+||||||||||+||+++++++++++|..|+|.+||+|+|.+++++||..|..++.++|.++++++||+||+.++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 005222 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (708)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 160 (708)
+...+.+||.++..+++...+.+.+.++.+.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999988889999999888877899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHH
Q 005222 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (708)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 240 (708)
++|||++++||+||+|||++|++.+.. ..+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|++
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~---~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKG---DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccC---CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 999999999999999999999976532 34678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHH
Q 005222 241 YFAAKFKEQY-KINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCR 319 (708)
Q Consensus 241 ~l~~~~~~~~-~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~ 319 (708)
|+.++|..++ +.++..+++++.||+.+||++|+.||.+.++.+.+++++++.++.+.|||++|+++|+|+++++..+|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~ 320 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVE 320 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876 467888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhC-CCCCCCCCchhhHhchHHHHHHHhCCC--ccccceEEeeccc
Q 005222 320 KALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFG-REPRRSLNASECVARGCALQCAMLSPA--FRVREYEVQDCNP 396 (708)
Q Consensus 320 ~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg-~~v~~~~n~~eava~GAa~~a~~~~~~--~~~~~~~~~d~~~ 396 (708)
++|++++++..+|+.|+||||+||+|+|+++|+++|+ .++..++|||+|||+|||++|+++++. ++++++.+.|++|
T Consensus 321 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p 400 (653)
T PTZ00009 321 KVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTP 400 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecc
Confidence 9999999999999999999999999999999999996 678899999999999999999999975 7788999999999
Q ss_pred eeeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeeccc----eEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCC
Q 005222 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL----FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNS 472 (708)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~ 472 (708)
|+||++..+ +.+.+||++|+++|++++.+|++..+ +.|.+++ |+.....+|..||+|.|.++++.+.
T Consensus 401 ~slgi~~~~-------~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~e--ge~~~~~~n~~lg~~~i~~i~~~~~ 471 (653)
T PTZ00009 401 LSLGLETAG-------GVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFE--GERAMTKDNNLLGKFHLDGIPPAPR 471 (653)
T ss_pred cccCccccC-------CceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEe--cccccCCCCceEEEEEEcCCCCCCC
Confidence 999998765 46889999999999999999976432 5666654 3444457889999999999999888
Q ss_pred CcceeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccc
Q 005222 473 ENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVV 552 (708)
Q Consensus 473 ~~~~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (708)
+.+.|+|+|++|.||+|+|++.+
T Consensus 472 g~~~i~v~f~id~~Gil~v~~~~--------------------------------------------------------- 494 (653)
T PTZ00009 472 GVPQIEVTFDIDANGILNVSAED--------------------------------------------------------- 494 (653)
T ss_pred CCceEEEEEEECCCCeEEEEEec---------------------------------------------------------
Confidence 88899999999999999999862
Q ss_pred ccccceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhh-hhccCCCHHHHHHH
Q 005222 553 RDKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS-TYRSFASDQEREGI 631 (708)
Q Consensus 553 ~k~~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~-~~~~~~~~~e~~~l 631 (708)
+.+.+...++|.... .+||.++++++++.+.+|..+|+.++++.+++|+||+|||++|++|++ +|..++++++++++
T Consensus 495 -~~t~~~~~~~i~~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l 572 (653)
T PTZ00009 495 -KSTGKSNKITITNDK-GRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATI 572 (653)
T ss_pred -ccCCceeeEEEeecc-ccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHH
Confidence 011122345555433 579999999999999999999999999999999999999999999974 58999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 005222 632 SRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (708)
Q Consensus 632 ~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (708)
.+.++++++|||+ +++++.++|++|+++|+++++||..|++.
T Consensus 573 ~~~l~~~~~wL~~-~~~~~~~~~~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 573 EKAIDEALEWLEK-NQLAEKEEFEHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred HHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999995 57899999999999999999999998753
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.6e-103 Score=891.13 Aligned_cols=612 Identities=25% Similarity=0.436 Sum_probs=552.5
Q ss_pred CeEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEc-CCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChH
Q 005222 1 MSVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFG-EKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPV 79 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (708)
-.|||||||||||+||++.+|.+.++.|..|+|.|||+|+|. ++++++|..|..++..+|.++++++||+||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 038999999999999999999999999999999999999997 46799999999999999999999999999999865
Q ss_pred HHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHH
Q 005222 80 VQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNA 159 (708)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 159 (708)
++.+...+||.+...++|.+.+.+...+ +.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 5556778999999988898887765443 78999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHH
Q 005222 160 ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLF 239 (708)
Q Consensus 160 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 239 (708)
|++|||+++++|+||+|||++|++.+ ..+.++||||+||||||+|++++.++.++|+++.|+.++||++||..|+
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~-----~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~ 232 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDR-----SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIV 232 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhcccc-----CCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHH
Confidence 99999999999999999999999764 3467999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCC----cceEEEeCHHHHHHHhhhhhHHHH
Q 005222 240 GYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKIA 315 (708)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~ 315 (708)
+|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.++.+ .++.+.|||++|+++|.++++++.
T Consensus 233 ~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~ 312 (668)
T PRK13410 233 DWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLL 312 (668)
T ss_pred HHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999999998899999999999999999999999999999877643 468889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeecc
Q 005222 316 IPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCN 395 (708)
Q Consensus 316 ~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~ 395 (708)
.+|+++|+++++++.+|+.|+||||+||||+|+++|+++||.++...+||++|||+|||++|+++++. ++++.+.|++
T Consensus 313 ~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~l~Dv~ 390 (668)
T PRK13410 313 RPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE--LKDLLLLDVT 390 (668)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccc--ccceeEEeec
Confidence 99999999999999999999999999999999999999999888899999999999999999999884 6789999999
Q ss_pred ceeeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeec--cceEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCC
Q 005222 396 PYSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRS--SLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSE 473 (708)
Q Consensus 396 ~~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~ 473 (708)
||+||+++.+ +.+.+|||+|+++|++++.+|++. ++..+.+.+.+|+.....+|..||+|.|.++|+++.|
T Consensus 391 p~slgie~~~-------g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g 463 (668)
T PRK13410 391 PLSLGLETIG-------GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRG 463 (668)
T ss_pred cccccceecC-------CeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCC
Confidence 9999999875 478899999999999999999874 4556666655666666789999999999999999988
Q ss_pred cceeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccc
Q 005222 474 NAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVR 553 (708)
Q Consensus 474 ~~~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (708)
.++|+|+|++|.||+|+|++.+
T Consensus 464 ~~~I~v~f~id~nGiL~V~a~d---------------------------------------------------------- 485 (668)
T PRK13410 464 VPQVQVAFDIDANGILQVSATD---------------------------------------------------------- 485 (668)
T ss_pred CCeEEEEEEECCCcEEEEEEEE----------------------------------------------------------
Confidence 8999999999999999999963
Q ss_pred cccceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhh---hhccCCCHHHHHH
Q 005222 554 DKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS---TYRSFASDQEREG 630 (708)
Q Consensus 554 k~~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~---~~~~~~~~~e~~~ 630 (708)
+.++++..++|... .+||+++++++++++.+|..+|+.++++.++||+||+|||.+|++|.+ .|..++++++|++
T Consensus 486 ~~tg~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 563 (668)
T PRK13410 486 RTTGREQSVTIQGA--STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRA 563 (668)
T ss_pred cCCCceeeeeeccc--ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHH
Confidence 01112234455433 569999999999999999999999999999999999999999999975 5889999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005222 631 ISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEY 692 (708)
Q Consensus 631 l~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~~~~~l~~~l~~~ 692 (708)
+...++++++|||+++.+...+.|.++++.|+.+..||..|+.| .-..-+..+++.+...
T Consensus 564 ~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 623 (668)
T PRK13410 564 VESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE--EDEGPLQGIKNTFGSL 623 (668)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccchhhhHHhhcccc
Confidence 99999999999999988888899999999999999999999999 3334455666655533
No 5
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=9.6e-101 Score=874.41 Aligned_cols=592 Identities=29% Similarity=0.476 Sum_probs=537.1
Q ss_pred Ce-EEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcC-CcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCCh
Q 005222 1 MS-VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE-KQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDP 78 (708)
Q Consensus 1 M~-vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 78 (708)
|. +||||||||||+||++.+|.+.++.|..|+|.+||+|+|.+ ++++||..|..+..++|.++++++|||||+.+.++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT 80 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch
Confidence 53 89999999999999999999999999999999999999975 58999999999999999999999999999999886
Q ss_pred HHHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHH
Q 005222 79 VVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLN 158 (708)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 158 (708)
. .+.+++||.++...+|.+.+.+. + +.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++
T Consensus 81 ~--~~~~~~~~~~v~~~~~~~~~~i~--~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 154 (653)
T PRK13411 81 E--EERSRVPYTCVKGRDDTVNVQIR--G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKD 154 (653)
T ss_pred h--HHhhcCCceEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHH
Confidence 4 35678999999888888776653 3 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHH
Q 005222 159 AASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVL 238 (708)
Q Consensus 159 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 238 (708)
||++|||++++||+||+|||++|++.+. ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|
T Consensus 155 Aa~~AGl~v~~li~EPtAAAl~y~~~~~----~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l 230 (653)
T PRK13411 155 AGTIAGLEVLRIINEPTAAALAYGLDKQ----DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCI 230 (653)
T ss_pred HHHHcCCCeEEEecchHHHHHHhccccc----CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHH
Confidence 9999999999999999999999998653 346789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccC----CcceEEEeCHHHHHHHhhhhhHHH
Q 005222 239 FGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMD----EKDVRGFIKREEFEELASGLTEKI 314 (708)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr~~fe~~~~~~~~~i 314 (708)
++|+.++|..+++.++..+++++.||+.+||++|+.||.+..+.+.++.++. +.++.+.|||++|+++|.|+++++
T Consensus 231 ~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~ 310 (653)
T PRK13411 231 VDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEAT 310 (653)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHH
Confidence 9999999998888899999999999999999999999999999999887653 257889999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhC-CCCCCCCCchhhHhchHHHHHHHhCCCccccceEEee
Q 005222 315 AIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFG-REPRRSLNASECVARGCALQCAMLSPAFRVREYEVQD 393 (708)
Q Consensus 315 ~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg-~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d 393 (708)
..+++++|+++++.+.+|+.|+||||+||+|+|+++|+++|| ..+..++|||+|||+|||++|+++++. ++++.+.|
T Consensus 311 ~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~d 388 (653)
T PRK13411 311 IEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE--VKDLLLLD 388 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC--ccceeeee
Confidence 999999999999999999999999999999999999999996 678889999999999999999999875 67899999
Q ss_pred ccceeeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeee--ccceEEEEEEeCCCCCCCCCCccceeEEeCCCCCCC
Q 005222 394 CNPYSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQR--SSLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSN 471 (708)
Q Consensus 394 ~~~~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~ 471 (708)
++||+||+++.+ +.+.+||+||+++|++++.+|.+ +++..+.+.+.+|++..+.+|..||+|.|.++|+++
T Consensus 389 v~p~slgi~~~~-------~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~ 461 (653)
T PRK13411 389 VTPLSLGIETLG-------EVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAP 461 (653)
T ss_pred cccceeeEEecC-------CceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCC
Confidence 999999999876 47889999999999999999986 445556665555666666889999999999999998
Q ss_pred CCcceeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccc
Q 005222 472 SENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSV 551 (708)
Q Consensus 472 ~~~~~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (708)
.|.++|+|+|.+|.||+|+|++.+
T Consensus 462 ~g~~~i~v~f~id~~Gil~v~a~d-------------------------------------------------------- 485 (653)
T PRK13411 462 RGVPQIEVSFEIDVNGILKVSAQD-------------------------------------------------------- 485 (653)
T ss_pred CCCccEEEEEEECCCCeEEEEEee--------------------------------------------------------
Confidence 888899999999999999999863
Q ss_pred cccccceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHH
Q 005222 552 VRDKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGI 631 (708)
Q Consensus 552 ~~k~~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l 631 (708)
..+.+...+.++.. .+||.++++++++++.+|..+|+.++++.++||+||+|||.+|+.|++ +..++++++|+++
T Consensus 486 --~~t~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~-~~~~~~~~er~~i 560 (653)
T PRK13411 486 --QGTGREQSIRITNT--GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE-NGELISEELKQRA 560 (653)
T ss_pred --ccCCceEeeEEecc--ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHH
Confidence 01112234455433 469999999999999999999999999999999999999999999975 6889999999999
Q ss_pred HHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 005222 632 SRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (708)
Q Consensus 632 ~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (708)
.+.++++++||+++ +++.++|++++++|++.+.||..+++.
T Consensus 561 ~~~l~~~~~wL~~~--~~~~~~~~~~~~el~~~~~~i~~~~y~ 601 (653)
T PRK13411 561 EQKVEQLEAALTDP--NISLEELKQQLEEFQQALLAIGAEVYQ 601 (653)
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999983 578999999999999999999987653
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=6.7e-101 Score=875.87 Aligned_cols=586 Identities=28% Similarity=0.481 Sum_probs=536.8
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcC-CcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHH
Q 005222 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE-KQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v 80 (708)
++||||||||||+||++++++++++.|..|+|.+||+|+|.+ +++++|..|..+..++|.++++++|||||+.++++.+
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 589999999999999999999999999999999999999975 5799999999999999999999999999999999999
Q ss_pred HhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 005222 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (708)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 160 (708)
+...+.+||.++..++|.+.+.+. + +.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~~~--~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIEAQ--G--KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred HhhhccCCeEEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 998999999999988888877653 3 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHH
Q 005222 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (708)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 240 (708)
++|||++++||+||+|||++|+... ..+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|++
T Consensus 198 ~~AGl~v~~li~EptAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~ 272 (663)
T PTZ00400 198 KIAGLDVLRIINEPTAAALAFGMDK-----NDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILN 272 (663)
T ss_pred HHcCCceEEEeCchHHHHHHhcccc-----CCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHH
Confidence 9999999999999999999999754 34689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCC----cceEEEeCHHHHHHHhhhhhHHHHH
Q 005222 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKIAI 316 (708)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~~ 316 (708)
|+..+|+.+++.++..+++++.+|+.+||++|+.||.+.++.+.++.++.+ .++.+.|||++|+++|+|+++++..
T Consensus 273 ~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~ 352 (663)
T PTZ00400 273 YLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIE 352 (663)
T ss_pred HHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999998888888999999999999999999999999888988876543 4789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccc
Q 005222 317 PCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNP 396 (708)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~ 396 (708)
+++++|+++++.+.+|+.|+||||+||+|+|+++|+++||.++...+|||+|||+|||++|+++++. ++++.+.|++|
T Consensus 353 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~p 430 (663)
T PTZ00400 353 PCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE--IKDLLLLDVTP 430 (663)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC--ccceEEEeccc
Confidence 9999999999999999999999999999999999999999888899999999999999999999875 57899999999
Q ss_pred eeeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeeccc----eEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCC
Q 005222 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL----FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNS 472 (708)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~ 472 (708)
++||+++.+ +.+.+|||+|+++|++++.+|++..+ +.|.+++ |+...+.+|..||+|.|.++++++.
T Consensus 431 ~slgi~~~~-------g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~e--ge~~~~~~n~~lg~~~i~~i~~~~~ 501 (663)
T PTZ00400 431 LSLGIETLG-------GVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQ--GEREMAADNKLLGQFDLVGIPPAPR 501 (663)
T ss_pred cceEEEecC-------CeeEEEEecCccCCccceeeeeeccCCCceEEEEEEE--ecCccCCcCceeEEEEEcCCCCCCC
Confidence 999999876 47889999999999999999987544 4555544 3444458889999999999999888
Q ss_pred CcceeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccc
Q 005222 473 ENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVV 552 (708)
Q Consensus 473 ~~~~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (708)
|.+.|+|+|.+|.||+|+|++.+
T Consensus 502 g~~~i~v~f~id~~Gil~v~a~~--------------------------------------------------------- 524 (663)
T PTZ00400 502 GVPQIEVTFDVDANGIMNISAVD--------------------------------------------------------- 524 (663)
T ss_pred CCceEEEEEEECCCCCEEEEEEe---------------------------------------------------------
Confidence 88899999999999999999863
Q ss_pred ccccceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHH
Q 005222 553 RDKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGIS 632 (708)
Q Consensus 553 ~k~~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~ 632 (708)
+.+++...++|+.. .+||+++++++++++.+|..+|+.++++.++||+||+|+|.+|+.|.+ +..++++++++++.
T Consensus 525 -~~~~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e-~~~~~s~~ere~i~ 600 (663)
T PTZ00400 525 -KSTGKKQEITIQSS--GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD-LKDKISDADKDELK 600 (663)
T ss_pred -ccCCcEEEEEeecc--ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhCCHHHHHHHH
Confidence 11123345555543 469999999999999999999999999999999999999999999975 88999999999999
Q ss_pred HHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHH
Q 005222 633 RSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRY 672 (708)
Q Consensus 633 ~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~ 672 (708)
+.++++++||+++ +.++|++++++|++++.|+..++
T Consensus 601 ~~l~~~~~WL~~~----d~~~i~~k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 601 QKITKLRSTLSSE----DVDSIKDKTKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999976 47899999999999999999854
No 7
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3e-99 Score=863.95 Aligned_cols=587 Identities=29% Similarity=0.498 Sum_probs=535.3
Q ss_pred Ce-EEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEc-CCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCCh
Q 005222 1 MS-VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFG-EKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDP 78 (708)
Q Consensus 1 M~-vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 78 (708)
|+ +||||||||||+||++++|.+++++|..|+|.+||+|+|. ++++++|..|..+..++|.++++++|||||+. ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 64 8999999999999999999999999999999999999997 67899999999999999999999999999998 67
Q ss_pred HHHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHH
Q 005222 79 VVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLN 158 (708)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 158 (708)
.++...+.+||+++..++|...+.+ .+ +.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 154 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAWVEI--DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKD 154 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 7888888999999998888877654 33 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHH
Q 005222 159 AASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVL 238 (708)
Q Consensus 159 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 238 (708)
||++|||++++||+||+|||++|++.+ ..+.++|||||||||||+|++++.++.++++++.|+.++||.+||..|
T Consensus 155 Aa~~AGl~v~~li~EptAAAl~y~~~~-----~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l 229 (627)
T PRK00290 155 AGKIAGLEVLRIINEPTAAALAYGLDK-----KGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRI 229 (627)
T ss_pred HHHHcCCceEEEecchHHHHHHhhhcc-----CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHH
Confidence 999999999999999999999998764 246889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCC----cceEEEeCHHHHHHHhhhhhHHH
Q 005222 239 FGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKI 314 (708)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i 314 (708)
++|+.++|+.+++.++..+++++.||+.+||++|+.||.+..+.+.++.++.+ .++.+.|||++|+++|+++++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~ 309 (627)
T PRK00290 230 IDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERT 309 (627)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHH
Confidence 99999999999998998999999999999999999999999999999877643 57889999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeec
Q 005222 315 AIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDC 394 (708)
Q Consensus 315 ~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~ 394 (708)
..+|+++|+.+++++.+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|+
T Consensus 310 ~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~--~~~~~~~d~ 387 (627)
T PRK00290 310 IEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD--VKDVLLLDV 387 (627)
T ss_pred HHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC--ccceeeeec
Confidence 999999999999999999999999999999999999999999889999999999999999999999874 678999999
Q ss_pred cceeeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeeccc----eEEEEEEeCCCCCCCCCCccceeEEeCCCCCC
Q 005222 395 NPYSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL----FHLELFYTNPNELPPGISSKVSCFTIGPFQGS 470 (708)
Q Consensus 395 ~~~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~ 470 (708)
+|++||+++.+ +.+.+|||+|+++|++++.+|++..+ +.|.+++ |+.....+|..||+|.|.++|+.
T Consensus 388 ~~~slgi~~~~-------~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~--ge~~~~~~~~~lg~~~i~~~~~~ 458 (627)
T PRK00290 388 TPLSLGIETLG-------GVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQ--GEREMAADNKSLGRFNLTGIPPA 458 (627)
T ss_pred cceEEEEEecC-------CeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEE--ecccccCcCceEEEEEECCCCCC
Confidence 99999999875 46889999999999999999987554 4555544 34444578899999999999998
Q ss_pred CCCcceeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccc
Q 005222 471 NSENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVS 550 (708)
Q Consensus 471 ~~~~~~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (708)
+.+.+.|+|+|.+|.||+|+|++.+
T Consensus 459 ~~g~~~i~v~f~~d~~gil~v~a~~------------------------------------------------------- 483 (627)
T PRK00290 459 PRGVPQIEVTFDIDANGIVHVSAKD------------------------------------------------------- 483 (627)
T ss_pred CCCCceEEEEEEECCCceEEEEEEE-------------------------------------------------------
Confidence 8888899999999999999999863
Q ss_pred ccccccceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHH
Q 005222 551 VVRDKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREG 630 (708)
Q Consensus 551 ~~~k~~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~ 630 (708)
..+.+...++|+.. .+||.++++++++++.+|...|+..+++.++||+||+|+|.+|+.|+ ++..+++++++++
T Consensus 484 ---~~~~~~~~~~i~~~--~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~-~~~~~~~~~e~~~ 557 (627)
T PRK00290 484 ---KGTGKEQSITITAS--SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK-ELGDKVPADEKEK 557 (627)
T ss_pred ---ccCCceeEEEeccc--cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCHHHHHH
Confidence 01112234445433 46999999999999999999999999999999999999999999997 4888999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 005222 631 ISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (708)
Q Consensus 631 l~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (708)
+.+.++++++||+++ +.++|++++++|+++++|+..|+++
T Consensus 558 i~~~l~~~~~wL~~~----~~~~i~~k~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 558 IEAAIKELKEALKGE----DKEAIKAKTEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999975 5789999999999999999998754
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.2e-99 Score=863.48 Aligned_cols=589 Identities=27% Similarity=0.439 Sum_probs=534.5
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcC-CcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHH
Q 005222 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE-KQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v 80 (708)
+|||||||||||+||++.+|.+++++|..|+|.|||+|+|.+ +++++|..|..+..++|.++++++|||||+.+.+ +
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 117 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--V 117 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--h
Confidence 489999999999999999999999999999999999999974 5799999999999999999999999999999876 4
Q ss_pred HhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 005222 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (708)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 160 (708)
+.+.+.+||.++..++|.+.+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 118 ~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 118 DEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred hhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 566788999999888898887766544 579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHH
Q 005222 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (708)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 240 (708)
++|||++++||+||+|||++|+... ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|++
T Consensus 196 ~~AGl~v~~li~EPtAAAlayg~~~-----~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~ 270 (673)
T PLN03184 196 RIAGLEVLRIINEPTAASLAYGFEK-----KSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 270 (673)
T ss_pred HHCCCCeEEEeCcHHHHHHHhhccc-----CCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHH
Confidence 9999999999999999999999764 24578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccC----CcceEEEeCHHHHHHHhhhhhHHHHH
Q 005222 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMD----EKDVRGFIKREEFEELASGLTEKIAI 316 (708)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr~~fe~~~~~~~~~i~~ 316 (708)
|+..+|..+++.++..+++++.||+.+||++|+.||.+.++.+.++++.. +.++.+.|||++|+++|.++++++..
T Consensus 271 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~ 350 (673)
T PLN03184 271 WLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKT 350 (673)
T ss_pred HHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999998886642 35788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccc
Q 005222 317 PCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNP 396 (708)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~ 396 (708)
+|+++|+++++.+.+|+.|+||||+||||.|+++|+++||.++...+|||+|||+|||++|+++++. ++++.+.|++|
T Consensus 351 ~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~~~dv~p 428 (673)
T PLN03184 351 PVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE--VSDIVLLDVTP 428 (673)
T ss_pred HHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC--ccceEEEeccc
Confidence 9999999999999999999999999999999999999999888899999999999999999999984 67899999999
Q ss_pred eeeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeec--cceEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCCc
Q 005222 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRS--SLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSEN 474 (708)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~ 474 (708)
|+||+++.+ +.+.+|||+|+++|++++.+|.+. +++.+.+.+.+|+.....+|..||+|.|.++++++.+.
T Consensus 429 ~slgi~~~~-------~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~ 501 (673)
T PLN03184 429 LSLGLETLG-------GVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGV 501 (673)
T ss_pred ccceEEecC-------CeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCC
Confidence 999999985 468899999999999999999875 45777776666665556889999999999999998888
Q ss_pred ceeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccccc
Q 005222 475 AKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRD 554 (708)
Q Consensus 475 ~~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 554 (708)
++|+|+|.+|.||+|+|++.+ +
T Consensus 502 ~~i~v~f~id~~GiL~V~a~~----------------------------------------------------------~ 523 (673)
T PLN03184 502 PQIEVKFDIDANGILSVSATD----------------------------------------------------------K 523 (673)
T ss_pred ceEEEEEEeCCCCeEEEEEEe----------------------------------------------------------c
Confidence 899999999999999999873 1
Q ss_pred ccceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHH
Q 005222 555 KAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRS 634 (708)
Q Consensus 555 ~~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~ 634 (708)
.+.+...++|+.. .+||+++++++++++.+|..+|+.++++.++||+||+|||.+|++|.+ +.+++++++++++.++
T Consensus 524 ~t~~~~~~~i~~~--~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e-~~~~~~~eer~~l~~~ 600 (673)
T PLN03184 524 GTGKKQDITITGA--STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE-LGDKVPADVKEKVEAK 600 (673)
T ss_pred CCCeEEEEEeccc--ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH-HhhhCCHHHHHHHHHH
Confidence 1123344555532 469999999999999999999999999999999999999999999964 8889999999999999
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHH
Q 005222 635 LQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYK 673 (708)
Q Consensus 635 l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~ 673 (708)
++++++||+.++ .+.+++++++|.+.+.++..+++
T Consensus 601 l~~~e~wL~~~d----~~~ik~~~~~l~~~l~~l~~~~~ 635 (673)
T PLN03184 601 LKELKDAIASGS----TQKMKDAMAALNQEVMQIGQSLY 635 (673)
T ss_pred HHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999763 57888888888888888887554
No 9
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1e-98 Score=850.44 Aligned_cols=589 Identities=27% Similarity=0.443 Sum_probs=537.1
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHHH
Q 005222 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVVQ 81 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v~ 81 (708)
.+||||||||||+||++++++++++.|..|.|.+||+|+|.+++++||..|..+...+|.++++++||+||+.+.++.++
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~ 107 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQ 107 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHH
Q 005222 82 KDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAAS 161 (708)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~ 161 (708)
...+.+||.++..+++...+.. +..+.++|+++++++|++|+..|+.++|.++.++|||||+||++.||+++++||+
T Consensus 108 ~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~ 184 (657)
T PTZ00186 108 KDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT 184 (657)
T ss_pred HhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHH
Confidence 9999999999988888766543 2236899999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHH
Q 005222 162 IAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGY 241 (708)
Q Consensus 162 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 241 (708)
+|||++++||+||+|||++|+... ..+.++||||+||||||+||+++.++.++|+++.|+.++||++||.+|++|
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~-----~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~ 259 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDK-----TKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDY 259 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccC-----CCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHH
Confidence 999999999999999999999754 346799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCC----cceEEEeCHHHHHHHhhhhhHHHHHH
Q 005222 242 FAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKIAIP 317 (708)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~~~ 317 (708)
+.++|..+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||++|+++|+|+++++..+
T Consensus 260 ~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~ 339 (657)
T PTZ00186 260 ILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAP 339 (657)
T ss_pred HHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHH
Confidence 99999999999998899999999999999999999999999988876532 45889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccce
Q 005222 318 CRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPY 397 (708)
Q Consensus 318 i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~~ 397 (708)
++++|+++++++.+|+.|+||||+||||.|+++|+++||.++...+|||+|||+|||++|+++++. ++++.+.|++||
T Consensus 340 v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~--~~~~~l~Dv~p~ 417 (657)
T PTZ00186 340 CKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD--VKGLVLLDVTPL 417 (657)
T ss_pred HHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc--cCceEEEeeccc
Confidence 999999999999999999999999999999999999999878889999999999999999999885 578999999999
Q ss_pred eeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeeccc----eEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCC
Q 005222 398 SIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL----FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSE 473 (708)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~ 473 (708)
+||+++.+ +.+.+|||||++||++++.+|++..| +.|.+++ |++..+.+|..||+|+|.++|+++.|
T Consensus 418 slgie~~~-------g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~q--Ge~~~~~~n~~lg~~~l~~ip~~~~G 488 (657)
T PTZ00186 418 SLGIETLG-------GVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQ--GEREMAADNQMMGQFDLVGIPPAPRG 488 (657)
T ss_pred cccceecC-------CEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEE--ecccccccccccceEEEcCCCCCCCC
Confidence 99999886 47889999999999999999987543 4555544 34445689999999999999999999
Q ss_pred cceeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccc
Q 005222 474 NAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVR 553 (708)
Q Consensus 474 ~~~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (708)
.+.|+|+|.+|.||+|+|++.+
T Consensus 489 ~~~I~Vtf~iD~nGiL~V~a~d---------------------------------------------------------- 510 (657)
T PTZ00186 489 VPQIEVTFDIDANGICHVTAKD---------------------------------------------------------- 510 (657)
T ss_pred CCcEEEEEEEcCCCEEEEEEEE----------------------------------------------------------
Confidence 9999999999999999999974
Q ss_pred cccceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Q 005222 554 DKAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISR 633 (708)
Q Consensus 554 k~~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~ 633 (708)
+.+++...+.|+.. ..||+++++++.+...++...|+.++++.+++|++|+++|.++..+.+. ..+++++++.+.+
T Consensus 511 ~~tg~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 586 (657)
T PTZ00186 511 KATGKTQNITITAN--GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW--KYVSDAEKENVKT 586 (657)
T ss_pred ccCCcEEEEEeccC--ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccCCHHHHHHHHH
Confidence 23344556666643 4699999999999999999999999999999999999999999999652 4689999999999
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHH
Q 005222 634 SLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYK 673 (708)
Q Consensus 634 ~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~ 673 (708)
.+...++||..+ +.+.+.+++++++|++.+.++..+++
T Consensus 587 ~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 624 (657)
T PTZ00186 587 LVAELRKAMENP--NVAKDDLAAATDKLQKAVMECGRTEY 624 (657)
T ss_pred HHHHHHHHHhcC--CcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999843 45678999999999999999987653
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=4.6e-98 Score=851.18 Aligned_cols=590 Identities=29% Similarity=0.455 Sum_probs=534.2
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcC-CcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHH
Q 005222 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE-KQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v 80 (708)
.+||||||||||+||++.+|.++++.|..|+|.+||+|+|.+ +++++|..|..+...+|.++++++||+||+.+.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 599999999999999999999999999999999999999975 5799999999999999999999999999999865 5
Q ss_pred HhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 005222 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (708)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 160 (708)
....+.+||.++..++|.+.+.+...+ ..++|+++++++|+++++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 556678999999888888887765444 579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHH
Q 005222 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (708)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 240 (708)
++|||++++||+||+|||++|+... ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|++
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 233 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDK-----KNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVN 233 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhcccc-----CCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHH
Confidence 9999999999999999999998754 34578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccC----CcceEEEeCHHHHHHHhhhhhHHHHH
Q 005222 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMD----EKDVRGFIKREEFEELASGLTEKIAI 316 (708)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr~~fe~~~~~~~~~i~~ 316 (708)
|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+.. +.++...|||++|+++|+++++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 313 (621)
T CHL00094 234 WLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRI 313 (621)
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 99999999999999899999999999999999999999888998887653 24688899999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccc
Q 005222 317 PCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNP 396 (708)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~ 396 (708)
+|+++|+++++.+.+|+.|+||||+||+|.|+++|+++||.++..++||++|||+|||++|+++++. ++++.+.|++|
T Consensus 314 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~--~~~~~~~d~~~ 391 (621)
T CHL00094 314 PVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKDILLLDVTP 391 (621)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCC--ccceeeeeeec
Confidence 9999999999999999999999999999999999999999888899999999999999999999874 57899999999
Q ss_pred eeeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeec--cceEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCCc
Q 005222 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRS--SLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSEN 474 (708)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~ 474 (708)
++||+++.+ +.+.+|||||+++|++++.+|++. ++..+.+.+.+|+...+.+|..||+|.|.++|+.+.|.
T Consensus 392 ~~lgi~~~~-------~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~ 464 (621)
T CHL00094 392 LSLGVETLG-------GVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGV 464 (621)
T ss_pred eeeeeeccC-------CEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCC
Confidence 999999875 478899999999999999999874 45556655555555556789999999999999988888
Q ss_pred ceeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccccc
Q 005222 475 AKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRD 554 (708)
Q Consensus 475 ~~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 554 (708)
+.|+|+|++|.||+|+|++.+ +
T Consensus 465 ~~i~v~f~id~~Gil~v~~~~----------------------------------------------------------~ 486 (621)
T CHL00094 465 PQIEVTFDIDANGILSVTAKD----------------------------------------------------------K 486 (621)
T ss_pred CcEEEEEEECCCCeEEEEEee----------------------------------------------------------c
Confidence 899999999999999999873 1
Q ss_pred ccceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHH
Q 005222 555 KAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRS 634 (708)
Q Consensus 555 ~~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~ 634 (708)
.+.+...++|... .+||+++++++++++.+|..+|+..+++.++||+||+|+|.+|++|++ +..++++++|+++.+.
T Consensus 487 ~t~~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~-~~~~~~~~~~~~~~~~ 563 (621)
T CHL00094 487 GTGKEQSITIQGA--STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE-LKDKISEEKKEKIENL 563 (621)
T ss_pred cCCceeeeeeccc--hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH-HhccCCHHHHHHHHHH
Confidence 1112234445432 469999999999999999999999999999999999999999999975 8889999999999999
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 005222 635 LQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (708)
Q Consensus 635 l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (708)
++++++|||+++ .++|++++++|+++++|+..+++.
T Consensus 564 l~~~~~wl~~~~----~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 564 IKKLRQALQNDN----YESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999864 479999999999999999986544
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.6e-97 Score=847.56 Aligned_cols=586 Identities=28% Similarity=0.478 Sum_probs=530.3
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCC-cEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHH
Q 005222 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK-QRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v 80 (708)
.|||||||||||+||++++|.+.++.|..|+|.+||+|+|.++ ++++|..|..+..++|.++++++|||||+.+ +.+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~--~~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF--DEV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCc--hHH
Confidence 3799999999999999999999999999999999999999855 7999999999999999999999999999998 346
Q ss_pred HhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 005222 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (708)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 160 (708)
+...+.+||. +..++|.+.+.+. + +.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v~--~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKVD--G--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEEC--C--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 7777889999 5566788777764 3 679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHH
Q 005222 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (708)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 240 (708)
++|||++++||+||+|||++|+..+. ..+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|++
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~----~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~ 229 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKS----KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIID 229 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhccc----CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHH
Confidence 99999999999999999999987642 34689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCC----cceEEEeCHHHHHHHhhhhhHHHHH
Q 005222 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKIAI 316 (708)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~~ 316 (708)
|+.++|..+++.++..+++++.||+.+||++|+.||.+.++.+.++.+..+ .++.+.|||++|+++|+|+++++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~ 309 (595)
T TIGR02350 230 WLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKE 309 (595)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHH
Confidence 999999999998998999999999999999999999999999998876543 5788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccc
Q 005222 317 PCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNP 396 (708)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~ 396 (708)
+++++|+++++++.+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|++|
T Consensus 310 ~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~--~~~~~~~d~~~ 387 (595)
T TIGR02350 310 PVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD--VKDVLLLDVTP 387 (595)
T ss_pred HHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC--cccceeeeccc
Confidence 9999999999999999999999999999999999999999888899999999999999999999886 67899999999
Q ss_pred eeeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeeccc--eEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCCc
Q 005222 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL--FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSEN 474 (708)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~ 474 (708)
++||+++.+ +.+.+||++|+++|++++.+|.+..+ ..+.+.+.+|+.....+|..||+|.|.++++++.+.
T Consensus 388 ~~igi~~~~-------~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~ 460 (595)
T TIGR02350 388 LSLGIETLG-------GVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGV 460 (595)
T ss_pred ceeEEEecC-------CceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCC
Confidence 999999875 46889999999999999999987554 455554444555556889999999999999988888
Q ss_pred ceeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccccc
Q 005222 475 AKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRD 554 (708)
Q Consensus 475 ~~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 554 (708)
++|+|+|.+|.||+|+|++.+ .
T Consensus 461 ~~i~v~f~~d~~G~l~v~~~~----------------------------------------------------------~ 482 (595)
T TIGR02350 461 PQIEVTFDIDANGILHVSAKD----------------------------------------------------------K 482 (595)
T ss_pred ceEEEEEEEcCCCeEEEEEEE----------------------------------------------------------c
Confidence 899999999999999999863 0
Q ss_pred ccceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHH
Q 005222 555 KAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRS 634 (708)
Q Consensus 555 ~~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~ 634 (708)
.+.+...++++.. .+||.++++++++++.+|...|+.++++.++||+||+|||.+|+.|++ +..++++++++++.+.
T Consensus 483 ~~~~~~~~~i~~~--~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~-~~~~~~~~e~~~l~~~ 559 (595)
T TIGR02350 483 GTGKEQSITITAS--SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE-AGDKLPAEEKEKIEKA 559 (595)
T ss_pred cCCceEEEEeccc--cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHH
Confidence 1112234455443 469999999999999999999999999999999999999999999975 6889999999999999
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHH
Q 005222 635 LQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRY 672 (708)
Q Consensus 635 l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~ 672 (708)
++++++||+++ +..+|++++++|++++.++..++
T Consensus 560 l~~~~~wL~~~----d~~~i~~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 560 VAELKEALKGE----DVEEIKAKTEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999975 56799999999999999998754
No 12
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-97 Score=789.68 Aligned_cols=695 Identities=29% Similarity=0.446 Sum_probs=582.3
Q ss_pred eEEEEEccccceEEEEEeCC-ceEEEeCCCCCccceEEEEEcCCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHH
Q 005222 2 SVVGFDIGNENCVIATVKHR-GVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~-~~~ii~~~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v 80 (708)
+|++||+||.|++||++++| +++|++|..++|++|++|+|.+++|+||++|..+..++|++++.+++.|+|+...+|.+
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v 102 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTV 102 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHH
Confidence 68999999999999999988 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCc-eeeecC-CCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHH
Q 005222 81 QKDLMVLPF-ESCESP-DGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLN 158 (708)
Q Consensus 81 ~~~~~~~~~-~~~~~~-~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 158 (708)
..+.+.+|+ .++.++ ++.+.|.+. + ...|++|+|+||+|.+.+..|+.+...++.++|||||.||++.||+++.+
T Consensus 103 ~ly~~~~p~~e~v~d~~rstV~F~i~--d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 103 DLYQKRFPFFELVEDPQRSTVVFKIS--D-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred HHHHhcCCceeecccCccceEEEEeC--C-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 888876664 566664 666766654 3 46799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeC----------CeEEEEEEeCCCC
Q 005222 159 AASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA----------GHMKVLSHAFDSS 228 (708)
Q Consensus 159 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~----------~~~~v~~~~~~~~ 228 (708)
||++||++++.||+|.+|||+.|+++++..+...+++++|||||+|+|.++++.+.- ..+++++.++|..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 999999999999999999999999998766778899999999999999999999861 4799999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcc--cccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHH
Q 005222 229 LGGRDFDDVLFGYFAAKFKEQYKI--NVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEEL 306 (708)
Q Consensus 229 lGG~~id~~l~~~l~~~~~~~~~~--~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~ 306 (708)
|||..|..+|.+|+...|.++++. +++.|||+|++|.++|+++|..||+|..+.++|+++++|+||+.+|||++||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEel 339 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEEL 339 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHH
Confidence 999999999999999999998764 688999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhC-CCCCCCCCchhhHhchHHHHHHHhCCCcc
Q 005222 307 ASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFG-REPRRSLNASECVARGCALQCAMLSPAFR 385 (708)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg-~~v~~~~n~~eava~GAa~~a~~~~~~~~ 385 (708)
|.++..++..+|.++|..++++.++|+.|+|+||++|+|.||+.|.++.| .++...+|+|||+++||+++||.||..|+
T Consensus 340 c~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksFK 419 (902)
T KOG0104|consen 340 CADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFK 419 (902)
T ss_pred HHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999998 68999999999999999999999999999
Q ss_pred ccceEEeeccceeeEEEecCCCc-ccCCCcceEEecCCCCcCceEEEEeee-ccceEEEEEEeCCCCCCCCCCccceeEE
Q 005222 386 VREYEVQDCNPYSIGISSDEGPI-CIGSNTNGEVFPKGQPIPCVKVLTLQR-SSLFHLELFYTNPNELPPGISSKVSCFT 463 (708)
Q Consensus 386 ~~~~~~~d~~~~~i~i~~~~~~~-~~~~~~~~~l~~~~~~~P~~k~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~ig~~~ 463 (708)
++++.+.|.++|+|.+.+.+.+. -........+|++|.+||..++++|+. +.+|.+.+.|+.- + ..+..++
T Consensus 420 vKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~-----~--~nl~~ve 492 (902)
T KOG0104|consen 420 VKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDL-----G--QNLTTVE 492 (902)
T ss_pred ccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhh-----c--cCccEEE
Confidence 99999999999999998876421 000124567999999999999999986 5568777765431 1 3456899
Q ss_pred eCCCCCC----C---CCcceeEEEEEEcCCeeEEEEEeeeeeccCCCCccc--------c----cccc-------ccccc
Q 005222 464 IGPFQGS----N---SENAKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTK--------H----NARS-------KMDKM 517 (708)
Q Consensus 464 i~~i~~~----~---~~~~~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~--------~----~~~~-------~~~~~ 517 (708)
++|+... . .....|+++|.+|.+|++.|..++++++...++... . +++. +++..
T Consensus 493 lsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae 572 (902)
T KOG0104|consen 493 LSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAE 572 (902)
T ss_pred EecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhh
Confidence 9988754 1 124679999999999999999999886542211100 0 0000 00000
Q ss_pred ccccccCCCCC-cccccccc--ccccccCCCC--ccccccccccceeeeEEEeeec--cCCCCHHHHHHHHHHHHHHhhc
Q 005222 518 ESEGVSIDSST-TVEDVQDS--ASVQSKSSHS--SAVSVVRDKAGRRLDISISETI--YGGMTKPELALAQETENLLAQQ 590 (708)
Q Consensus 518 ~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~--~~~~~~~k~~~~~~~l~i~~~~--~~~ls~~e~~~~~~~~~~~~~~ 590 (708)
..+..+++.+. .....+++ ++++++++.+ .|-.++.+.......++|.+.. ++-|+...+.+...++..+.++
T Consensus 573 ~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~ 652 (902)
T KOG0104|consen 573 EKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQK 652 (902)
T ss_pred hhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHh
Confidence 00000000000 00000011 1111111100 0110111111123344555443 3469999999999999999999
Q ss_pred chhHHHHHHHhhhHHHHHHHHHHHhhh-hhccCCCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHH
Q 005222 591 DITMEQTKDKKNALESYVYEMRNKLFS-TYRSFASDQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIE 669 (708)
Q Consensus 591 D~~~~~~~~a~N~LEs~iy~~r~~l~~-~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~ 669 (708)
|+.+.++++|.|.||+|+|++.++|++ +|..+.+++|++.|++.+..+.+||++++.++.+++|.+++.+|++++..+.
T Consensus 653 e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~ 732 (902)
T KOG0104|consen 653 EKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKN 732 (902)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999985 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcC------CCCCcCcc
Q 005222 670 NRYKDGEARAQATRDLLQCIVEYRTAVGS------LPPEEQDF 706 (708)
Q Consensus 670 ~R~~e~~~rp~~~~~l~~~l~~~~~~~~~------~~~~~~~~ 706 (708)
+|..+++++|+.++.|+..|+++.++... .+|+.++|
T Consensus 733 ~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d~~f 775 (902)
T KOG0104|consen 733 FREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKDTIF 775 (902)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhccch
Confidence 99999999999999999999998888754 45777666
No 13
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-98 Score=804.79 Aligned_cols=604 Identities=31% Similarity=0.498 Sum_probs=563.8
Q ss_pred CeEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHH
Q 005222 1 MSVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v 80 (708)
|.++|||||||++||+++.++.++++.|++|+|.|||+|+|.++++++|..|..+...+|.++++++||++|+.++++.+
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v 86 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEV 86 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 005222 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (708)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 160 (708)
+.++++|||.+....++.+.+.+.+.++.+.++|+++.+++|.+++..|+.++|..+.++|+|||+||+..||+++.+|+
T Consensus 87 ~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~ 166 (620)
T KOG0101|consen 87 QSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAA 166 (620)
T ss_pred HhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHH
Confidence 99999999999977677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHH
Q 005222 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (708)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 240 (708)
.+|||+++++|+||+|||++|++.+. .....+|||+|+||||||+|++.+.+|.+.|+++.++.++||.+||+.|++
T Consensus 167 ~iaGl~vlrii~EPtAaalAygl~k~---~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 167 LIAGLNVLRIINEPTAAALAYGLDKK---VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred HhcCCceeeeecchHHHHHHhhcccc---ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHH
Confidence 99999999999999999999997764 256788999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHH
Q 005222 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRK 320 (708)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~ 320 (708)
|+..+|+++++.++..|+++++||+.+||++|+.||....+.+.+++|+++.|+...|||.+|+.+|.+++.++..++..
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~ 323 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEK 323 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHh-CCCCCCCCCchhhHhchHHHHHHHhCCC--ccccceEEeeccce
Q 005222 321 ALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLF-GREPRRSLNASECVARGCALQCAMLSPA--FRVREYEVQDCNPY 397 (708)
Q Consensus 321 ~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f-g~~v~~~~n~~eava~GAa~~a~~~~~~--~~~~~~~~~d~~~~ 397 (708)
+|+++.+.+.+|+.|+||||++|+|.+|..++++| ++.+..++||||+||+|||++||.+++. ..+.++++.|+.|.
T Consensus 324 ~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl 403 (620)
T KOG0101|consen 324 ALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPL 403 (620)
T ss_pred HHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccc
Confidence 99999999999999999999999999999999999 5888999999999999999999999874 34478999999999
Q ss_pred eeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeeccce--EEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCCcc
Q 005222 398 SIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSLF--HLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENA 475 (708)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~ 475 (708)
++||+..+ +.+.++|++||.+|++++.+|++..|+ .+.+..++|++....+|.++|.|.+.||||+|.|.+
T Consensus 404 ~~gve~a~-------~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp 476 (620)
T KOG0101|consen 404 SLGVETAG-------GVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVP 476 (620)
T ss_pred cccccccC-------CcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCc
Confidence 99999886 579999999999999999999876553 233334456677789999999999999999999999
Q ss_pred eeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccccc
Q 005222 476 KVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDK 555 (708)
Q Consensus 476 ~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 555 (708)
.|+|+|.+|.+|+|.|++.+ +.
T Consensus 477 ~IevtfdiD~ngiL~Vta~d----------------------------------------------------------~s 498 (620)
T KOG0101|consen 477 QIEVTFDIDANGILNVTAVD----------------------------------------------------------KS 498 (620)
T ss_pred ceeEEEecCCCcEEEEeecc----------------------------------------------------------cc
Confidence 99999999999999999973 33
Q ss_pred cceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHH
Q 005222 556 AGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSL 635 (708)
Q Consensus 556 ~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l 635 (708)
+++...+.|++.. +.||+++|++|....+.+..+|...+.+..++|.||+|+|.++..+++.- ..++++.+.++...+
T Consensus 499 tgK~~~i~i~n~~-grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~-~~i~~~~~~~~~~~~ 576 (620)
T KOG0101|consen 499 TGKENKITITNDK-GRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK-GKINEEDKQKILDKC 576 (620)
T ss_pred CCccceEEEeccc-ceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc-cccChhhhhhHHHHH
Confidence 3445566677766 78999999999999999999999999999999999999999999998644 889999999999999
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhh
Q 005222 636 QETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDG 675 (708)
Q Consensus 636 ~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 675 (708)
+++..||+.+. .+.+++|+.|+.+|+..+.||..+++..
T Consensus 577 ~~~i~wl~~~~-~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 577 NEVINWLDKNQ-LAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHhhhcc-cccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 99999999985 5559999999999999999999987654
No 14
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=3.6e-95 Score=821.95 Aligned_cols=578 Identities=28% Similarity=0.434 Sum_probs=522.3
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCC-cEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHHH
Q 005222 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK-QRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVVQ 81 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v~ 81 (708)
+||||||||||+||++.+|.++++.|..|++.+||+|+|.++ +++||..|..++.++|.++++++|||||+.+.++..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 589999999999999999999999999999999999999855 789999999999999999999999999999877532
Q ss_pred hhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHH
Q 005222 82 KDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAAS 161 (708)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~ 161 (708)
.+.+||.++..++|.+.+++.. ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||+
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTVQ----GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeCC----CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 5678999988888888877642 2689999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHH
Q 005222 162 IAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGY 241 (708)
Q Consensus 162 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 241 (708)
+|||++++||+||+|||++|++.. ..+.++||||+||||||+|++++.++.++|+++.|+.++||++||..|++|
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDK-----ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhcc-----CCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 999999999999999999998765 346789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHHH
Q 005222 242 FAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKA 321 (708)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~ 321 (708)
+.++ ++.+...+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|+++|+|+++++..+++++
T Consensus 229 l~~~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~ 302 (599)
T TIGR01991 229 ILKQ----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRA 302 (599)
T ss_pred HHHh----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9865 45565678999999999999999999999988888864 68899999999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccceeeEE
Q 005222 322 LADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYSIGI 401 (708)
Q Consensus 322 l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~~~i~i 401 (708)
|+++++.+.+|+.|+||||+||||+|+++|+++||..+..++|||+|||+|||++|+++++.++.+++.+.|++||+||+
T Consensus 303 L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 303 LRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGI 382 (599)
T ss_pred HHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEE
Confidence 99999999999999999999999999999999999888889999999999999999999998888899999999999999
Q ss_pred EecCCCcccCCCcceEEecCCCCcCceEEEEeee--ccceEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCCcceeEE
Q 005222 402 SSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQR--SSLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENAKVKV 479 (708)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v 479 (708)
++.+ +.+.+|||||+++|++++..|++ +++..+.+.+.+|++....+|.+||+|.|.++|+.+.|.++|+|
T Consensus 383 ~~~~-------g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v 455 (599)
T TIGR01991 383 ETMG-------GLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRV 455 (599)
T ss_pred EecC-------CEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEE
Confidence 9976 47889999999999999988876 45556666555666555688999999999999999888899999
Q ss_pred EEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccccccccee
Q 005222 480 TVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDKAGRR 559 (708)
Q Consensus 480 ~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 559 (708)
+|++|.||+|+|++.+ +.++++
T Consensus 456 ~f~id~~gil~V~a~~----------------------------------------------------------~~t~~~ 477 (599)
T TIGR01991 456 TFQVDADGLLTVSAQE----------------------------------------------------------QSTGVE 477 (599)
T ss_pred EEEECCCCeEEEEEEE----------------------------------------------------------CCCCcE
Confidence 9999999999999963 111222
Q ss_pred eeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHH
Q 005222 560 LDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETE 639 (708)
Q Consensus 560 ~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~ 639 (708)
..+.|... .+|++++++++.+.+.++..+|+.++++.+++|++|+|+|.+++.+.+ +..++++++++++...+++++
T Consensus 478 ~~~~i~~~--~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 554 (599)
T TIGR01991 478 QSIQVKPS--YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA-DGDLLSEDERAAIDAAMEALQ 554 (599)
T ss_pred EEEecccc--cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHH
Confidence 33455433 459999999999999999999999999999999999999999999864 556899999999999999999
Q ss_pred HHhhcCCCCcCHHHHHHHHHHHHHhHHHHHH
Q 005222 640 EWLYDDGDDETANTYASKLEDLKKLVDPIEN 670 (708)
Q Consensus 640 ~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~ 670 (708)
+||+++ ..+.+++++++|+++..++..
T Consensus 555 ~~l~~~----~~~~~~~~~~~l~~~~~~~~~ 581 (599)
T TIGR01991 555 KALQGD----DADAIKAAIEALEEATDNFAA 581 (599)
T ss_pred HHHhcC----CHHHHHHHHHHHHHHHHHHHH
Confidence 999975 467899999999999988886
No 15
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.1e-93 Score=811.14 Aligned_cols=578 Identities=26% Similarity=0.412 Sum_probs=519.0
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHHH
Q 005222 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVVQ 81 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v~ 81 (708)
.+||||||||||+||++.+|.++++.|..|++.+||+|+|.+++++||..|..+...+|.++++++|||||+.+.+ ++
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQ 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hh
Confidence 4799999999999999999999999999999999999999988899999999999999999999999999999876 34
Q ss_pred hhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHH
Q 005222 82 KDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAAS 161 (708)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~ 161 (708)
.....+||.+...++|.+.+.+.. ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~~----~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 173 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTAQ----GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEecC----CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 445678999888778888777642 3689999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHH
Q 005222 162 IAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGY 241 (708)
Q Consensus 162 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 241 (708)
+|||++++||+||+|||++|++.. ..+.++||||+||||||+|++++.++.++|+++.|+.++||++||..|++|
T Consensus 174 ~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~ 248 (616)
T PRK05183 174 LAGLNVLRLLNEPTAAAIAYGLDS-----GQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADW 248 (616)
T ss_pred HcCCCeEEEecchHHHHHHhhccc-----CCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 999999999999999999998754 246789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHHH
Q 005222 242 FAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKA 321 (708)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~ 321 (708)
+.++| +.+...+++++.+|+.+||++|+.||.+..+.+.+..+ ...|||++|+++|+|+++++..+++++
T Consensus 249 ~~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~ 318 (616)
T PRK05183 249 ILEQA----GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRA 318 (616)
T ss_pred HHHHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99775 34455689999999999999999999999888888532 234999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccceeeEE
Q 005222 322 LADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYSIGI 401 (708)
Q Consensus 322 l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~~~i~i 401 (708)
|+++++.+.+|+.|+||||+||+|+|+++|+++||.++..++|||+|||+|||++|+++++.+..+++.+.|++|++||+
T Consensus 319 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi 398 (616)
T PRK05183 319 LRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGL 398 (616)
T ss_pred HHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccc
Confidence 99999999999999999999999999999999999877789999999999999999999998777899999999999999
Q ss_pred EecCCCcccCCCcceEEecCCCCcCceEEEEeee--ccceEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCCcceeEE
Q 005222 402 SSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQR--SSLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENAKVKV 479 (708)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v 479 (708)
++.+ +.+.+|||||+++|++++..|++ +++..+.+.+.+|++..+.+|..||+|.|.++|+.+.|.++|+|
T Consensus 399 ~~~~-------g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v 471 (616)
T PRK05183 399 ETMG-------GLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRV 471 (616)
T ss_pred eecC-------CeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEE
Confidence 9875 47889999999999999888876 44556666655666655688999999999999999888899999
Q ss_pred EEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccccccccee
Q 005222 480 TVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDKAGRR 559 (708)
Q Consensus 480 ~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 559 (708)
+|++|.||+|+|++.+ +.+++.
T Consensus 472 ~f~~d~~Gil~V~a~~----------------------------------------------------------~~~~~~ 493 (616)
T PRK05183 472 TFQVDADGLLSVTAME----------------------------------------------------------KSTGVE 493 (616)
T ss_pred EEEECCCCeEEEEEEE----------------------------------------------------------cCCCcE
Confidence 9999999999999863 122233
Q ss_pred eeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHH
Q 005222 560 LDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETE 639 (708)
Q Consensus 560 ~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~ 639 (708)
..+.|... .+||+++++++.+++.++..+|+..+++.+++|++|+|+|.+++.+.+ ....+++++++++...+++++
T Consensus 494 ~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 570 (616)
T PRK05183 494 ASIQVKPS--YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA-DGDLLSAAERAAIDAAMAALR 570 (616)
T ss_pred EEeccccc--ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHH
Confidence 45555433 359999999999999999999999999999999999999999999964 446789999999999999999
Q ss_pred HHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHH
Q 005222 640 EWLYDDGDDETANTYASKLEDLKKLVDPIENRY 672 (708)
Q Consensus 640 ~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~ 672 (708)
+||..+ +.+.|++++++|++.+.++..+.
T Consensus 571 ~~l~~~----d~~~~~~~~~~l~~~~~~~~~~~ 599 (616)
T PRK05183 571 EVAQGD----DADAIEAAIKALDKATQEFAARR 599 (616)
T ss_pred HHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999854 57899999999999999998733
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=4.2e-94 Score=828.30 Aligned_cols=595 Identities=39% Similarity=0.661 Sum_probs=534.3
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHHHh
Q 005222 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVVQK 82 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v~~ 82 (708)
||||||||+||+||++.+++++++.|..|+|++||+|+|.+++++||..|...+.++|+++++++|+|||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHH
Q 005222 83 DLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASI 162 (708)
Q Consensus 83 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 162 (708)
+.+.+||.++..++|.+.+.+.+.|..+.++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999999989999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHH
Q 005222 163 AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYF 242 (708)
Q Consensus 163 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 242 (708)
|||++++||+||+|||++|++.+.. .+.++|||||||||+|+|++++.++.++++++.++..+||++||..|++|+
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~----~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~ 236 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD----KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYL 236 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS----SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc----cccceeccccccceEeeeehhcccccccccccccccccccceecceeeccc
Confidence 9999999999999999999876642 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCC--CCeeeEEeccccC-CcceEEEeCHHHHHHHhhhhhHHHHHHHH
Q 005222 243 AAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSA--NAEAPLNIECLMD-EKDVRGFIKREEFEELASGLTEKIAIPCR 319 (708)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~--~~~~~i~i~~l~~-~~d~~~~itr~~fe~~~~~~~~~i~~~i~ 319 (708)
.++|+.+++.++..+++.+.+|+.+||++|+.||. +....+.++++.+ |.++.+.|||++|++++.|+++++..+|+
T Consensus 237 ~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 237 LEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccc
Confidence 99999999999999999999999999999999999 6777788888887 88999999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccceee
Q 005222 320 KALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYSI 399 (708)
Q Consensus 320 ~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~~~i 399 (708)
++|++++++..+|+.|+||||+||+|+|++.|++.||..+..++||++|||+|||++|+.+++.++++++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 99999999999999999999999999999999999998888999999999999999999999989999999999999999
Q ss_pred EEEecCCCcccCCCcceEEecCCCCcCceEEEEeeecc----ceEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCCcc
Q 005222 400 GISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSS----LFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENA 475 (708)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~ 475 (708)
|+.+.+ +.+.+++++|+++|+.++..|.+.. .+.+.++|++.. ...++..||+|.|.++++.+.+.+
T Consensus 397 ~i~~~~-------~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~--~~~~~~~ig~~~i~~i~~~~~g~~ 467 (602)
T PF00012_consen 397 GIEVSN-------GKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESS--SFEDNKKIGSYTISGIPPAPKGKP 467 (602)
T ss_dssp EEEETT-------TEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSS--BGGGSEEEEEEEEES-SSSSTTSS
T ss_pred cccccc-------cccccccccccccccccccccchhccccccccceeeecccc--cccccccccccccccccccccccc
Confidence 999986 4788999999999999887776533 367777654432 346789999999999998888889
Q ss_pred eeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccccc
Q 005222 476 KVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDK 555 (708)
Q Consensus 476 ~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 555 (708)
+|+|+|++|.+|+|+|+++.+..
T Consensus 468 ~i~v~f~ld~~Gil~V~~~~~~~--------------------------------------------------------- 490 (602)
T PF00012_consen 468 KIKVTFELDENGILSVEAAEVET--------------------------------------------------------- 490 (602)
T ss_dssp EEEEEEEEETTSEEEEEEEETTT---------------------------------------------------------
T ss_pred ceeeEEeeeeeeehhhhhccccc---------------------------------------------------------
Confidence 99999999999999999985211
Q ss_pred cceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHH
Q 005222 556 AGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSL 635 (708)
Q Consensus 556 ~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l 635 (708)
.....+.+.... .+++++++++++++.++...|+.++++.+++|+||+++|++|+.|++. .++++++++ .+.+
T Consensus 491 -~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~-~~~~~~~~~---~~~l 563 (602)
T PF00012_consen 491 -GKEEEVTVKKKE--TLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED-KDFVSEEEK---KKKL 563 (602)
T ss_dssp -TEEEEEEEESSS--SSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-GGGSTHHHH---HHHH
T ss_pred -cccccccccccc--ccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh-hccCCHHHH---HHHH
Confidence 112233444333 499999999999999999999999999999999999999999999875 677777777 8899
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 005222 636 QETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (708)
Q Consensus 636 ~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (708)
+++.+||+++.++++.++|++|+++|+++.+||..|+++
T Consensus 564 ~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 564 KETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999988899999999999999999999999863
No 17
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-91 Score=719.30 Aligned_cols=593 Identities=29% Similarity=0.472 Sum_probs=542.2
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEc-CCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHH
Q 005222 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFG-EKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v 80 (708)
+|+|||+||||||++++.++.+.++.|..|.|.+||+|+|. +.++++|..|+.+...||.|+++.-||+||+.+.+|.+
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHH
Confidence 48999999999999999999999999999999999999995 55899999999999999999999999999999999999
Q ss_pred HhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 005222 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (708)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 160 (708)
+.+++..||+++..++|...++. . .+.++|.++.+++|.+++.+|+.+++.++...|+|||+||++.||+++++|.
T Consensus 108 q~~~k~vpyKiVk~~ngdaw~e~--~--G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 108 QKDIKQVPYKIVKASNGDAWVEA--R--GKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHhCCcceEEccCCcEEEEe--C--CeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999999999987776 3 4789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHH
Q 005222 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (708)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 240 (708)
++||+++++++|||+|||++|++++. ....++|||+||||||++++.+.+|.++|.++.+|.++||.+||..+.+
T Consensus 184 ~iagl~vlrvineptaaalaygld~k-----~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~ 258 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKK-----EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVR 258 (640)
T ss_pred hhccceeeccCCccchhHHhhccccc-----CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHH
Confidence 99999999999999999999999763 2688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCC----cceEEEeCHHHHHHHhhhhhHHHHH
Q 005222 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDE----KDVRGFIKREEFEELASGLTEKIAI 316 (708)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~i~~ 316 (708)
|+..+|+...++++..+.+++.||++++|++|+.||...+..+.++.+..+ ..+++++||.+|++++.++++|.+.
T Consensus 259 ~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~ 338 (640)
T KOG0102|consen 259 FIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIE 338 (640)
T ss_pred HHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999987655 4688999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccc
Q 005222 317 PCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNP 396 (708)
Q Consensus 317 ~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~ 396 (708)
+++.+|++|++..+||+.|+||||.+|+|.+++.+++.||......+||||+||.|||++++.+++. ++++++.|+.|
T Consensus 339 p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~ge--VkdvlLLdVtp 416 (640)
T KOG0102|consen 339 PCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGE--VKDVLLLDVTP 416 (640)
T ss_pred HHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcc--ccceeeeecch
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 78999999999
Q ss_pred eeeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeec--cceEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCCc
Q 005222 397 YSIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRS--SLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSEN 474 (708)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~ 474 (708)
+++||+.-+ +.+..|++||+.||.+++..|.+. ++-.+.+...+|++....+|.++|+|.+.|+||+|+|.
T Consensus 417 LsLgietlg-------gvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgv 489 (640)
T KOG0102|consen 417 LSLGIETLG-------GVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGV 489 (640)
T ss_pred HHHHHHhhh-------hhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCC
Confidence 999999886 579999999999999999999874 34444444445556566899999999999999999999
Q ss_pred ceeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCcccccccc
Q 005222 475 AKVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRD 554 (708)
Q Consensus 475 ~~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 554 (708)
++|.|+|.+|.|||++|++.. |
T Consensus 490 pqieVtfDIdanGI~~vsA~d----------------------------------------------------------k 511 (640)
T KOG0102|consen 490 PQIEVTFDIDANGIGTVSAKD----------------------------------------------------------K 511 (640)
T ss_pred CceeEEEeecCCceeeeehhh----------------------------------------------------------c
Confidence 999999999999999999973 2
Q ss_pred ccceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHH
Q 005222 555 KAGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRS 634 (708)
Q Consensus 555 ~~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~ 634 (708)
.+.+..++.+... ++||+++++.+....+.+...|+.++++.+..|..|+++|.....+.. |.+..+.++..+|+..
T Consensus 512 ~t~K~qsi~i~~s--ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~-~~~~~~~~~~~~i~~~ 588 (640)
T KOG0102|consen 512 GTGKSQSITIASS--GGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE-FEEKIPAEECEKLEEK 588 (640)
T ss_pred ccCCccceEEeec--CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh-hhhhCcHHHHHHHHHH
Confidence 2334455666554 469999999999999999999999999999999999999999999864 7788888888899999
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 005222 635 LQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (708)
Q Consensus 635 l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (708)
+....+.+-.- ...+-+++..+...|++-..||..-++.
T Consensus 589 i~~l~~~~~~~-~~~~~~~~k~~~~~l~q~~lkl~es~~k 627 (640)
T KOG0102|consen 589 ISDLRELVANK-DSGDMEEIKKAMSALQQASLKLFESAYK 627 (640)
T ss_pred HHHHHHHHhhh-ccCChhhHHHHHHHHHHhhhHHHHHHHh
Confidence 99999988743 1223378888889999888888765443
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.9e-88 Score=759.59 Aligned_cols=553 Identities=22% Similarity=0.327 Sum_probs=471.8
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCC----
Q 005222 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGD---- 77 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~---- 77 (708)
.+||||||||||+||++.+++++++.|..|++.+||+|+|.++++++|..| +++++||++|+.+.+
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 389999999999999999999999999999999999999998889999987 799999999999875
Q ss_pred hHHHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHH
Q 005222 78 PVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYL 157 (708)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 157 (708)
+.+....+. .....++... +...+ +.++|+++++++|++|++.|+.+++.++.++|||||+||++.||++++
T Consensus 90 ~~~~~~~k~----~~~~~~~~~~--~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 90 PALFSLVKD----YLDVNSSELK--LNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred hhhHhhhhh----eeecCCCeeE--EEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 222211111 1112223333 33333 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHH
Q 005222 158 NAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDV 237 (708)
Q Consensus 158 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 237 (708)
+||++||++++++|+||+|||++|+.... ....+||||+||||||+|++++.++.++|+++.|+.++||++||.+
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~-----~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~ 236 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKN-----QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVV 236 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccC-----CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHH
Confidence 99999999999999999999999997642 3568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHH
Q 005222 238 LFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIP 317 (708)
Q Consensus 238 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~ 317 (708)
|++|+..+|. ...+.+ .++.||++|+.||.+..... ..+.|||++|+++|+|+++++..+
T Consensus 237 l~~~~~~~~~------~~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~ 296 (595)
T PRK01433 237 ITQYLCNKFD------LPNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINI 296 (595)
T ss_pred HHHHHHHhcC------CCCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHH
Confidence 9999998763 222222 23459999999998764221 168899999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccce
Q 005222 318 CRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPY 397 (708)
Q Consensus 318 i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~~ 397 (708)
++++|++++ ..+|+.|+||||+||+|+|+++|+++||.++..++||++|||+|||++|+.+++.+ .++.+.|++|+
T Consensus 297 i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~--~~~~l~Dv~p~ 372 (595)
T PRK01433 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH--TNSLLIDVVPL 372 (595)
T ss_pred HHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc--cceEEEEeccc
Confidence 999999998 56899999999999999999999999998888899999999999999999998753 57899999999
Q ss_pred eeEEEecCCCcccCCCcceEEecCCCCcCceEEEEeeec--cceEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCCcc
Q 005222 398 SIGISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRS--SLFHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENA 475 (708)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~ 475 (708)
+||+++.+ +.+.+||+||+++|++++..|++. ++..+.+.+++|+.....+|..||+|.|.++|+++.|.+
T Consensus 373 slgi~~~~-------g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~ 445 (595)
T PRK01433 373 SLGMELYG-------GIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSI 445 (595)
T ss_pred ceEEEecC-------CEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCc
Confidence 99999986 478999999999999988888764 444455544455555568999999999999999988889
Q ss_pred eeEEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccccc
Q 005222 476 KVKVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDK 555 (708)
Q Consensus 476 ~i~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 555 (708)
+|+|+|++|.||+|+|++.+ +.
T Consensus 446 ~i~vtf~id~~Gil~V~a~~----------------------------------------------------------~~ 467 (595)
T PRK01433 446 RAEVTFAIDADGILSVSAYE----------------------------------------------------------KI 467 (595)
T ss_pred cEEEEEEECCCCcEEEEEEE----------------------------------------------------------cC
Confidence 99999999999999999974 22
Q ss_pred cceeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHH
Q 005222 556 AGRRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSL 635 (708)
Q Consensus 556 ~~~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l 635 (708)
+++...+.|... ..||+++++++.++..++...|..++++.+++|++|+++|.+++.+++ +...+++++++++.+.+
T Consensus 468 t~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~~~~ 544 (595)
T PRK01433 468 SNTSHAIEVKPN--HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE-LTTLLSESEISIINSLL 544 (595)
T ss_pred CCcEEEEEecCC--CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHH
Confidence 334455566533 359999999999999999999999999999999999999999999975 66678999999999999
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHH-HHHHHH
Q 005222 636 QETEEWLYDDGDDETANTYASKLEDLKKLVDP-IENRYK 673 (708)
Q Consensus 636 ~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~p-i~~R~~ 673 (708)
++.++||..+ ....+++++++|+....+ +..|..
T Consensus 545 ~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (595)
T PRK01433 545 DNIKEAVHAR----DIILINNSIKEFKSKIKKSMDTKLN 579 (595)
T ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999854 456777777777777777 444443
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-87 Score=743.34 Aligned_cols=569 Identities=30% Similarity=0.463 Sum_probs=520.7
Q ss_pred eEEEEEccccceEEEEEeCC-ceEEEeCCCCCccceEEEEEcCCc-EEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChH
Q 005222 2 SVVGFDIGNENCVIATVKHR-GVDVLLNEESNRETPSIVCFGEKQ-RFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPV 79 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~-~~~ii~~~~g~r~~Ps~v~~~~~~-~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (708)
.+||||||||||+||+++++ .+.++.|..|.|.+||+|+|..++ +++|..|+.++..+|.++++.+||++|+...
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~--- 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN--- 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC---
Confidence 48999999999999999988 799999999999999999999765 9999999999999999999999999998721
Q ss_pred HHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHH
Q 005222 80 VQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNA 159 (708)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 159 (708)
+. .+.+...+ +.++|+++++++|.++++.|+.+++..+.++|||||+||++.||+++++|
T Consensus 83 -----------------~~-~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 -----------------GL-KISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred -----------------CC-cceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 11 11122223 67999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHH
Q 005222 160 ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLF 239 (708)
Q Consensus 160 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 239 (708)
+++|||+++++++||+|||++|++... .+..|||||+||||||+|++++..|.++|+++.++.++||++||.+|+
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~-----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~ 217 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG-----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALI 217 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC-----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHH
Confidence 999999999999999999999998763 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHH
Q 005222 240 GYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCR 319 (708)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~ 319 (708)
+|+..+|+.++++++..+++++.||+.+||++|+.||.+.++.++++.+..+.++...|||++||+++.+++.++..++.
T Consensus 218 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~ 297 (579)
T COG0443 218 DYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVE 297 (579)
T ss_pred HHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887777789999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCCccccceEEeeccceee
Q 005222 320 KALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPAFRVREYEVQDCNPYSI 399 (708)
Q Consensus 320 ~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~~~~~~~~~~d~~~~~i 399 (708)
++|.+++++..+|+.|+||||++|||.|++.++++||.++...+|||++||.|||++|+.+++..+ ++++.|++|+++
T Consensus 298 ~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~--d~ll~Dv~plsl 375 (579)
T COG0443 298 QALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP--DVLLLDVIPLSL 375 (579)
T ss_pred HHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc--CceEEeeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred EEEecCCCcccCCCcceEEecCCCCcCceEEEEeeeccc--eEEEEEEeCCCCCCCCCCccceeEEeCCCCCCCCCccee
Q 005222 400 GISSDEGPICIGSNTNGEVFPKGQPIPCVKVLTLQRSSL--FHLELFYTNPNELPPGISSKVSCFTIGPFQGSNSENAKV 477 (708)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 477 (708)
|+++.+ +.+.+++++|+.+|.++...|.+..| -.+.+.+.+|+.....+|..+|.|.+.++|+++.|.+.|
T Consensus 376 gie~~~-------~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i 448 (579)
T COG0443 376 GIETLG-------GVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQI 448 (579)
T ss_pred ccccCc-------chhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCce
Confidence 999886 47889999999999999888877544 456666666776667899999999999999999999999
Q ss_pred EEEEEEcCCeeEEEEEeeeeeccCCCCcccccccccccccccccccCCCCCccccccccccccccCCCCccccccccccc
Q 005222 478 KVTVKLNLHGIVSVESAWLIEGHGDDPVTKHNARSKMDKMESEGVSIDSSTTVEDVQDSASVQSKSSHSSAVSVVRDKAG 557 (708)
Q Consensus 478 ~v~~~ld~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 557 (708)
.|+|.+|.||+++|++.+ +.++
T Consensus 449 ~v~f~iD~~gi~~v~a~~----------------------------------------------------------~~~~ 470 (579)
T COG0443 449 EVTFDIDANGILNVTAKD----------------------------------------------------------LGTG 470 (579)
T ss_pred EEEeccCCCcceEeeeec----------------------------------------------------------ccCC
Confidence 999999999999999953 2234
Q ss_pred eeeeEEEeeeccCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHH
Q 005222 558 RRLDISISETIYGGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQE 637 (708)
Q Consensus 558 ~~~~l~i~~~~~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e 637 (708)
+...+.|.... + |++++++.+.+....+...|+..++..+.+|..++++|.++..|.+.. .+++++++++.+.+.+
T Consensus 471 k~~~i~i~~~~-~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~ 546 (579)
T COG0443 471 KEQSITIKASS-G-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV--KVSEEEKEKIEEAITD 546 (579)
T ss_pred ceEEEEEecCC-C-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc--cCCHHHHHHHHHHHHH
Confidence 45667777665 5 999999999999999999999999999999999999999999997644 8999999999999999
Q ss_pred HHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 005222 638 TEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (708)
Q Consensus 638 ~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (708)
+++||+.+ .++++.+.++|+....++..++.+
T Consensus 547 ~~~~l~~~-----~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 547 LEEALEGE-----KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999982 889999999999999999887653
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.6e-55 Score=478.40 Aligned_cols=337 Identities=23% Similarity=0.309 Sum_probs=288.9
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEc----------------------------------------
Q 005222 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFG---------------------------------------- 42 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~---------------------------------------- 42 (708)
++|||||||||+||++.++.++++.++.|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5899999999999999999999999999999999999994
Q ss_pred -CCcEEEcHHHHHhHhcCCcch--HHHHHHhhCCCCCChHHHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHH
Q 005222 43 -EKQRFIGAAGYASAMMHPKST--VSQVKRLIGRRYGDPVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMG 119 (708)
Q Consensus 43 -~~~~~~G~~A~~~~~~~~~~~--~~~~k~llg~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a 119 (708)
++..++|..|...+..+|.++ +..+|++||...-. .+ ....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~------------------~~------------~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK------------------PQ------------QVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCC------------------cc------------ceeCHHHHHH
Confidence 345689999999999999988 77999999965211 01 1234899999
Q ss_pred HHHHHHHHHHHhhcCCCcceEEEEecCCCC-----HHHHHH---HHHHHHHcCCcceeeecchHHHHHhccccccCCCCC
Q 005222 120 MLFSHLKDVAEKNLEMPVVDCVIGVPSYFT-----DLQRRE---YLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANG 191 (708)
Q Consensus 120 ~~L~~l~~~a~~~~~~~~~~~VitVPa~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~ 191 (708)
++|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.||+++++|++||+|||++|+... .
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~-----~ 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL-----T 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc-----C
Confidence 999999999999999999999999999998 778766 799999999999999999999999998643 3
Q ss_pred CceEEEEEEeCCcceEEEEEEEeCC-------eEEEEEEeCCCCcchHHHHHHHH-HHHHHHHHH----hhcccc-----
Q 005222 192 GKSYIAFVDIGHSDTQVSIVSFEAG-------HMKVLSHAFDSSLGGRDFDDVLF-GYFAAKFKE----QYKINV----- 254 (708)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsv~~~~~~-------~~~v~~~~~~~~lGG~~id~~l~-~~l~~~~~~----~~~~~~----- 254 (708)
.+..+||||+||||+|+|++++.++ ..+|+++.| .++||++||..|+ +++...|.. +++.++
T Consensus 207 ~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~ 285 (450)
T PRK11678 207 EEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPF 285 (450)
T ss_pred CCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhh
Confidence 5788999999999999999999754 368999997 6899999999998 678777752 111100
Q ss_pred ------------------------------cCCHHHH------------HHHHHHHHHhhhhcCCCCeeeEEeccccCCc
Q 005222 255 ------------------------------YSNVRAC------------IRLRAACEKLKKVLSANAEAPLNIECLMDEK 292 (708)
Q Consensus 255 ------------------------------~~~~~~~------------~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~ 292 (708)
..+|+.+ .+|+.+||++|+.||.+.++.+.++.+. .
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~ 363 (450)
T PRK11678 286 WNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--D 363 (450)
T ss_pred hhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--C
Confidence 1134333 3788999999999999999999998654 4
Q ss_pred ceEEEeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhch
Q 005222 293 DVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARG 372 (708)
Q Consensus 293 d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~G 372 (708)
++...|||++|+++++++++++..+++++|+++++. ++.|+||||+|++|.|++.|.+.||.......+|.++||.|
T Consensus 364 ~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~G 440 (450)
T PRK11678 364 GLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAG 440 (450)
T ss_pred CcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHH
Confidence 578899999999999999999999999999999876 47899999999999999999999986555677999999999
Q ss_pred HHHHHHHh
Q 005222 373 CALQCAML 380 (708)
Q Consensus 373 Aa~~a~~~ 380 (708)
+|++|..+
T Consensus 441 la~~a~~~ 448 (450)
T PRK11678 441 LARWAQVV 448 (450)
T ss_pred HHHHHHhh
Confidence 99999753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=5.7e-39 Score=341.53 Aligned_cols=307 Identities=21% Similarity=0.301 Sum_probs=234.7
Q ss_pred EEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCC--cE-EEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHH
Q 005222 4 VGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK--QR-FIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVV 80 (708)
Q Consensus 4 vGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~--~~-~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v 80 (708)
+||||||++|+|+.. +...++. +||+|+|..+ .. .+|.+|..+..+.|.+...
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~--------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA--------------- 61 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE---------------
Confidence 799999999999885 3323332 5999999953 23 6899997665554433321
Q ss_pred HhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH
Q 005222 81 QKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA 160 (708)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 160 (708)
..|. .+|. +...+.+..+|+++.+.+..........+|||||++|+..||+++.+|+
T Consensus 62 -----~~pi-----~~G~-------------i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 62 -----IRPL-----RDGV-------------IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred -----EccC-----CCCe-------------EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 0111 1232 2222455666666665443222223447999999999999999999999
Q ss_pred HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHH
Q 005222 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (708)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 240 (708)
+.||++.+.+++||+|||++|+... ..+..++|||+||||||+++++... ++ ..++.++||++||+.|++
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~-----~~~~~~lVvDiGggttdvsvv~~g~----~~-~~~~~~lGG~did~~i~~ 188 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDI-----SQPSGNMVVDIGGGTTDIAVLSLGG----IV-TSSSIKVAGDKFDEAIIR 188 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCcc-----cCCCeEEEEEeCCCeEEEEEEEeCC----EE-EeCCcCCHHHHHHHHHHH
Confidence 9999999999999999999998743 3466799999999999999998752 22 235789999999999999
Q ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCC----eeeEEec--cccCCcceEEEeCHHHHHHHhhhhhHHH
Q 005222 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA----EAPLNIE--CLMDEKDVRGFIKREEFEELASGLTEKI 314 (708)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~~~~i 314 (708)
++..+|. .... ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++.++++++
T Consensus 189 ~l~~~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i 255 (336)
T PRK13928 189 YIRKKYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAI 255 (336)
T ss_pred HHHHHhc----hhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHH
Confidence 9987653 2221 257999999886431 1223332 2345567789999999999999999999
Q ss_pred HHHHHHHHHHcC--CCCCCcc-EEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHh
Q 005222 315 AIPCRKALADAG--LHVDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAML 380 (708)
Q Consensus 315 ~~~i~~~l~~~~--~~~~~i~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~ 380 (708)
...+++.|+.++ +..+.++ .|+|+||+|++|.|+++|++.|+.++....||++|||+|||+++..+
T Consensus 256 ~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 256 VQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 999999999986 4456677 79999999999999999999999999889999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=2.8e-38 Score=335.07 Aligned_cols=305 Identities=23% Similarity=0.310 Sum_probs=241.2
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCCc---EEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChH
Q 005222 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQ---RFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPV 79 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (708)
.+||||||+|+++ +.++.. ++.|+ ||+|+++.++ ..+|.+|+.+..++|.++... +
T Consensus 6 ~~giDlGt~~~~i--~~~~~~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~---------- 64 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKG-IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R---------- 64 (335)
T ss_pred eEEEEcccccEEE--EECCCc-EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----------
Confidence 5899999999986 334433 45564 9999998543 479999998887777665321 1
Q ss_pred HHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcc--eEEEEecCCCCHHHHHHHH
Q 005222 80 VQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVV--DCVIGVPSYFTDLQRREYL 157 (708)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~--~~VitVPa~~~~~qr~~l~ 157 (708)
|. .+|.+ .+. ++++++|++++..++..++..+. .+|||||++|+..||+++.
T Consensus 65 --------pi-----~~G~I------------~d~-d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 65 --------PM-----KDGVI------------ADY-DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred --------cC-----CCCcc------------CCH-HHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 11 12321 122 68899999999988777776553 7999999999999999999
Q ss_pred HHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHH
Q 005222 158 NAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDV 237 (708)
Q Consensus 158 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 237 (708)
+|++.||++++.+++||+|||++|+... ..+..++|+|+||||||++++.+.+ ++ ..++..+||++||..
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~-----~~~~~~lvvDiG~gtt~v~vi~~~~----~~-~~~~~~~GG~~id~~ 188 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPV-----DEPVANVVVDIGGGTTEVAIISFGG----VV-SCHSIRIGGDQLDED 188 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCc-----CCCceEEEEEeCCCeEEEEEEEeCC----EE-EecCcCCHHHHHHHH
Confidence 9999999999999999999999997643 4467899999999999999998653 22 234678999999999
Q ss_pred HHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCC----eeeEEec--cccCCcceEEEeCHHHHHHHhhhhh
Q 005222 238 LFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA----EAPLNIE--CLMDEKDVRGFIKREEFEELASGLT 311 (708)
Q Consensus 238 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~~ 311 (708)
|.+++...+ +.... ...||++|+.++... ...+.+. ++..+.+..+.+++++|+++|.+++
T Consensus 189 l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l 255 (335)
T PRK13929 189 IVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESL 255 (335)
T ss_pred HHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHH
Confidence 999997654 33321 167999999997531 1223332 2334556789999999999999999
Q ss_pred HHHHHHHHHHHHHcCC--CCCCcc-EEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHH
Q 005222 312 EKIAIPCRKALADAGL--HVDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQC 377 (708)
Q Consensus 312 ~~i~~~i~~~l~~~~~--~~~~i~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a 377 (708)
.++...+.+.|++++. ..+.++ .|+|+||+|++|.++++|++.||.++....||+++|++||+..-
T Consensus 256 ~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 256 LHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 9999999999999853 335677 69999999999999999999999999888999999999999763
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.2e-35 Score=316.66 Aligned_cols=305 Identities=23% Similarity=0.344 Sum_probs=227.0
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCC-c--EEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChH
Q 005222 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK-Q--RFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPV 79 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (708)
.|||||||++++++.. +.+. ++ .+||+|++... + .++|++|..+..+.|.++...
T Consensus 7 ~igIDlGt~~~~i~~~-~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------- 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVK-GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------- 64 (334)
T ss_pred eeEEEcCcceEEEEEC-CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE-------------
Confidence 5899999999998553 2222 22 27999999754 3 389999987765555432110
Q ss_pred HHhhhccCCceeeecCCCCeEEEEEecCceeeec-HHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHH
Q 005222 80 VQKDLMVLPFESCESPDGGISIKLKYLGETHTFC-PVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLN 158 (708)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 158 (708)
+|. .+|.+ ..+. .++++..++...... .. ....+|+|||++|+..||++++.
T Consensus 65 -------~pi-----~~G~i----------~d~~~~~~ll~~~~~~~~~~----~~-~~~~~vi~vP~~~~~~~r~~~~~ 117 (334)
T PRK13927 65 -------RPM-----KDGVI----------ADFDVTEKMLKYFIKKVHKN----FR-PSPRVVICVPSGITEVERRAVRE 117 (334)
T ss_pred -------ecC-----CCCee----------cCHHHHHHHHHHHHHHHhhc----cC-CCCcEEEEeCCCCCHHHHHHHHH
Confidence 111 13322 1121 234444444433222 21 12379999999999999999999
Q ss_pred HHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHH
Q 005222 159 AASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVL 238 (708)
Q Consensus 159 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 238 (708)
|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++.+. . ..++.++||++||+.|
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~-----~~~~~~lvvDiGggttdvs~v~~~~~----~-~~~~~~lGG~~id~~l 187 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPV-----TEPTGSMVVDIGGGTTEVAVISLGGI----V-YSKSVRVGGDKFDEAI 187 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCcc-----cCCCeEEEEEeCCCeEEEEEEecCCe----E-eeCCcCChHHHHHHHH
Confidence 999999999999999999999998643 34567899999999999999987632 1 2346789999999999
Q ss_pred HHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCe----eeEEe--ccccCCcceEEEeCHHHHHHHhhhhhH
Q 005222 239 FGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAE----APLNI--ECLMDEKDVRGFIKREEFEELASGLTE 312 (708)
Q Consensus 239 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~----~~i~i--~~l~~~~d~~~~itr~~fe~~~~~~~~ 312 (708)
.+++.+++ +.... ...||++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.++
T Consensus 188 ~~~l~~~~----~~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 254 (334)
T PRK13927 188 INYVRRNY----NLLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLS 254 (334)
T ss_pred HHHHHHHh----CcCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHH
Confidence 99998654 22221 2578999999874322 22333 334455667889999999999999999
Q ss_pred HHHHHHHHHHHHcCCC--CCCcc-EEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHH
Q 005222 313 KIAIPCRKALADAGLH--VDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (708)
Q Consensus 313 ~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 379 (708)
++...|.++|++++.. .+.++ .|+|+||+|++|.++++|++.|+.++....||+++||+|||+++..
T Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 9999999999998533 22334 5999999999999999999999999999999999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=3e-35 Score=312.82 Aligned_cols=305 Identities=22% Similarity=0.330 Sum_probs=223.7
Q ss_pred EEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCC-----c--EEEcHHHHHhHhcCCcchHHHHHHhhCCCCC
Q 005222 4 VGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK-----Q--RFIGAAGYASAMMHPKSTVSQVKRLIGRRYG 76 (708)
Q Consensus 4 vGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 76 (708)
+||||||+||+++... .+. ++ .+||+|+|..+ + ..+|++|.....+.|.+.-. +
T Consensus 5 ~giDlGt~~s~i~~~~-~~~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~-------- 65 (333)
T TIGR00904 5 IGIDLGTANTLVYVKG-RGI-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--I-------- 65 (333)
T ss_pred eEEecCcceEEEEECC-CCE-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--E--------
Confidence 8999999999998853 232 32 36999999743 3 57999997655444433210 0
Q ss_pred ChHHHhhhccCCceeeecCCCCeEEEEEecCceeee-cHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHH
Q 005222 77 DPVVQKDLMVLPFESCESPDGGISIKLKYLGETHTF-CPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRRE 155 (708)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~ 155 (708)
.|. .+|.+ ..+ ..++++..+|..+... .+.....+|+|||++|+..||++
T Consensus 66 ----------~pi-----~~G~i----------~d~~~~~~~~~~~l~~~~~~----~~~~~~~~vitvP~~~~~~~r~~ 116 (333)
T TIGR00904 66 ----------RPM-----KDGVI----------ADFEVTEKMIKYFIKQVHSR----KSFFKPRIVICVPSGITPVERRA 116 (333)
T ss_pred ----------ecC-----CCCEE----------EcHHHHHHHHHHHHHHHhcc----cccCCCcEEEEeCCCCCHHHHHH
Confidence 111 13322 112 1234444444443322 12122379999999999999999
Q ss_pred HHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHH
Q 005222 156 YLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFD 235 (708)
Q Consensus 156 l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 235 (708)
+++|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++.+- . ..++.++||++||
T Consensus 117 ~~~~~~~ag~~~~~li~ep~aaa~~~g~~~-----~~~~~~lVvDiG~gttdvs~v~~~~~----~-~~~~~~lGG~did 186 (333)
T TIGR00904 117 VKESALSAGAREVYLIEEPMAAAIGAGLPV-----EEPTGSMVVDIGGGTTEVAVISLGGI----V-VSRSIRVGGDEFD 186 (333)
T ss_pred HHHHHHHcCCCeEEEecCHHHHHHhcCCcc-----cCCceEEEEEcCCCeEEEEEEEeCCE----E-ecCCccchHHHHH
Confidence 999999999999999999999999997632 34678999999999999999987631 1 2346789999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCe-----eeEEecc--ccCCcceEEEeCHHHHHHHhh
Q 005222 236 DVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAE-----APLNIEC--LMDEKDVRGFIKREEFEELAS 308 (708)
Q Consensus 236 ~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~-----~~i~i~~--l~~~~d~~~~itr~~fe~~~~ 308 (708)
+.|++++..++ +.... +..||++|+.++.... ..+.+.. ...+......|++++|.+++.
T Consensus 187 ~~l~~~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~ 253 (333)
T TIGR00904 187 EAIINYIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQ 253 (333)
T ss_pred HHHHHHHHHHh----cccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHH
Confidence 99999998654 22221 2679999999865321 1222221 112334567899999999999
Q ss_pred hhhHHHHHHHHHHHHHcCCCC-CCc-c-EEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHH
Q 005222 309 GLTEKIAIPCRKALADAGLHV-DKI-H-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (708)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 379 (708)
+.++++...+.+.|+.++... .++ + .|+|+||+|++|.++++|++.||.++....||+++||.||++++..
T Consensus 254 ~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 254 EPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 999999999999999876432 234 3 6999999999999999999999999999999999999999998654
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=5e-34 Score=304.52 Aligned_cols=308 Identities=23% Similarity=0.321 Sum_probs=229.8
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCC---cEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChH
Q 005222 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK---QRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPV 79 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (708)
.+||||||++|+++++.+ ++ ++ + +||+|++... ..++|++|.....+.|.+.-.
T Consensus 10 ~vgiDlGt~~t~i~~~~~-~~-~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~-------------- 66 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGK-GI-VL-N------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA-------------- 66 (335)
T ss_pred ceEEEcCCCcEEEEECCC-CE-EE-e------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--------------
Confidence 389999999999988633 32 22 2 5999999742 258999997665444432110
Q ss_pred HHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHH
Q 005222 80 VQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNA 159 (708)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 159 (708)
..|+ .+|.+ .+ -+.+..+++++.+.+..........+|+|+|++|+..+|+++.+|
T Consensus 67 ------~~pi-----~~G~i------------~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 67 ------IRPL-----KDGVI------------AD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred ------eecC-----CCCeE------------cC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 0111 13322 11 134566666666554433334467899999999999999999999
Q ss_pred HHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHH
Q 005222 160 ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLF 239 (708)
Q Consensus 160 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 239 (708)
++.+|++.+.+++||+|||++|+... ..+..++|||+||||||++++.... ++. .+..++||.+||+.|.
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~-----~~~~~~lVvDiG~gttdvs~v~~g~----~~~-~~~~~lGG~~id~~l~ 192 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPV-----TEPVGNMVVDIGGGTTEVAVISLGG----IVY-SESIRVAGDEMDEAIV 192 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCc-----CCCCceEEEEeCCCeEEEEEEEeCC----EEe-ecCcCchhHHHHHHHH
Confidence 99999999999999999999987643 2345689999999999999997652 222 4578999999999999
Q ss_pred HHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCe----eeEEec--cccCCcceEEEeCHHHHHHHhhhhhHH
Q 005222 240 GYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAE----APLNIE--CLMDEKDVRGFIKREEFEELASGLTEK 313 (708)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~----~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~~~~ 313 (708)
+++.+++ +.+.. ...||++|+.++.... ..+.+. .+..+.+..+.|++++|++++.+.+++
T Consensus 193 ~~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~ 259 (335)
T PRK13930 193 QYVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQ 259 (335)
T ss_pred HHHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHH
Confidence 9998754 33222 1578999999975432 123332 223445567899999999999999999
Q ss_pred HHHHHHHHHHHcCCC--CCCcc-EEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHh
Q 005222 314 IAIPCRKALADAGLH--VDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAML 380 (708)
Q Consensus 314 i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~ 380 (708)
+.+.+.++|+.+... .+.++ .|+|+||+|++|.++++|++.|+.++....+|+++||+||++.+...
T Consensus 260 i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 260 IVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 999999999987432 22345 49999999999999999999999988888899999999999988643
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=7.6e-32 Score=278.61 Aligned_cols=304 Identities=24% Similarity=0.353 Sum_probs=216.7
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCCc---EEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChH
Q 005222 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQ---RFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPV 79 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (708)
-+||||||+++.|+. .+.+ ++.++ ||+|+++... ..+|.+|..+..+.|.+. .
T Consensus 3 ~igIDLGT~~t~i~~-~~~G--iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i---------------~ 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV-KGKG--IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI---------------E 58 (326)
T ss_dssp EEEEEE-SSEEEEEE-TTTE--EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------E
T ss_pred ceEEecCcccEEEEE-CCCC--EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------E
Confidence 589999999999855 3333 55555 9999998653 368999965544443221 0
Q ss_pred HHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHH
Q 005222 80 VQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNA 159 (708)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 159 (708)
+ ..| ..+|.+ .=-++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|
T Consensus 59 ~-----~~P-----l~~GvI-------------~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 59 V-----VRP-----LKDGVI-------------ADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp E-----E-S-----EETTEE-------------SSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred E-----Ecc-----ccCCcc-------------cCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 0 111 123432 11245666777777666543233456799999999999999999999
Q ss_pred HHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHH
Q 005222 160 ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLF 239 (708)
Q Consensus 160 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 239 (708)
+..||.+.+.|+.||.|||++.++.- ..+...||+|+||||||++++... . ++.+. ...+||++||++|.
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i-----~~~~g~miVDIG~GtTdiavislg--g--iv~s~-si~~gG~~~DeaI~ 185 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDI-----FEPRGSMIVDIGGGTTDIAVISLG--G--IVASR-SIRIGGDDIDEAII 185 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--T-----TSSS-EEEEEE-SS-EEEEEEETT--E--EEEEE-EES-SHHHHHHHHH
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCC-----CCCCceEEEEECCCeEEEEEEECC--C--EEEEE-EEEecCcchhHHHH
Confidence 99999999999999999999988643 567899999999999999999644 3 33333 46899999999999
Q ss_pred HHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCC----eeeEEec--cccCCcceEEEeCHHHHHHHhhhhhHH
Q 005222 240 GYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA----EAPLNIE--CLMDEKDVRGFIKREEFEELASGLTEK 313 (708)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~~~~ 313 (708)
+|+.+++ ++.+.. ..||++|+.++... ...+.+. ++..|...++.|+-+++.++|.+.+.+
T Consensus 186 ~~ir~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~ 252 (326)
T PF06723_consen 186 RYIREKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQ 252 (326)
T ss_dssp HHHHHHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHH
Confidence 9998774 455554 88999999986432 1234443 456788889999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC---Cc--cEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHH
Q 005222 314 IAIPCRKALADAGLHVD---KI--HSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCA 378 (708)
Q Consensus 314 i~~~i~~~l~~~~~~~~---~i--~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~ 378 (708)
|...++++|+.. +++ || ++|+|+||+++++.+.++|++.+|.++....||..||+.||.....
T Consensus 253 I~~~i~~~Le~~--pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 253 IVEAIKEVLEKT--PPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHTS---HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999999975 222 33 4799999999999999999999999999999999999999986543
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=8.2e-30 Score=251.97 Aligned_cols=309 Identities=27% Similarity=0.390 Sum_probs=241.7
Q ss_pred EEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcC--Cc---EEEcHHHHHhHhcCCcchHHHHHHhhCCCCCC
Q 005222 3 VVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGE--KQ---RFIGAAGYASAMMHPKSTVSQVKRLIGRRYGD 77 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~--~~---~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~ 77 (708)
.+||||||.|+.|+.- +.+ +++++ ||+|++.. +. ..+|.+| |+++|+...+
T Consensus 8 diGIDLGTanTlV~~k-~kg--IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~n 63 (342)
T COG1077 8 DIGIDLGTANTLVYVK-GKG--IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPGN 63 (342)
T ss_pred cceeeecccceEEEEc-Cce--EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCCCC
Confidence 5899999999999774 333 77887 99999986 32 2689999 5677776554
Q ss_pred hHHHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcC-CCcceEEEEecCCCCHHHHHHH
Q 005222 78 PVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLE-MPVVDCVIGVPSYFTDLQRREY 156 (708)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~-~~~~~~VitVPa~~~~~qr~~l 156 (708)
.. .+.+..||.+ .--++...+|+|+++.+..... .....++++||..-++.+|+++
T Consensus 64 i~----------aiRPmkdGVI-------------Ad~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi 120 (342)
T COG1077 64 IV----------AIRPMKDGVI-------------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAI 120 (342)
T ss_pred ce----------EEeecCCcEe-------------ecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHH
Confidence 21 1233445543 2224556667777776643222 3445799999999999999999
Q ss_pred HHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHH
Q 005222 157 LNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDD 236 (708)
Q Consensus 157 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~ 236 (708)
++|++.||.+.+.++.||.|||+..++ |...+..-+|||+||||||++++.+.+ ++... ...+||+.||+
T Consensus 121 ~ea~~~aGa~~V~lieEp~aAAIGagl-----pi~ep~G~mvvDIGgGTTevaVISlgg----iv~~~-Sirv~GD~~De 190 (342)
T COG1077 121 KEAAESAGAREVYLIEEPMAAAIGAGL-----PIMEPTGSMVVDIGGGTTEVAVISLGG----IVSSS-SVRVGGDKMDE 190 (342)
T ss_pred HHHHHhccCceEEEeccHHHHHhcCCC-----cccCCCCCEEEEeCCCceeEEEEEecC----EEEEe-eEEEecchhhH
Confidence 999999999999999999999998765 446677889999999999999998874 33333 57899999999
Q ss_pred HHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCC--------CeeeEEeccccCCcceEEEeCHHHHHHHhh
Q 005222 237 VLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSAN--------AEAPLNIECLMDEKDVRGFIKREEFEELAS 308 (708)
Q Consensus 237 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~--------~~~~i~i~~l~~~~d~~~~itr~~fe~~~~ 308 (708)
.|.+|+.++ |++.+.+ ..||++|...... .+..+.-.++..+..-.++++-+++.+.++
T Consensus 191 ~Ii~yvr~~----~nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~ 257 (342)
T COG1077 191 AIIVYVRKK----YNLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALE 257 (342)
T ss_pred HHHHHHHHH----hCeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHH
Confidence 999999876 4555554 6689999887322 123344556667778889999999999999
Q ss_pred hhhHHHHHHHHHHHHHc--CCCCCCcc-EEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhC
Q 005222 309 GLTEKIAIPCRKALADA--GLHVDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLS 381 (708)
Q Consensus 309 ~~~~~i~~~i~~~l~~~--~~~~~~i~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~ 381 (708)
+.++.|.+.++..|+.. .+..+-++ .++|+||++.+..+.+.|.+..+.++....+|-.|||.|+.+....+.
T Consensus 258 ~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 258 EPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999999985 23333344 499999999999999999999999999999999999999998777654
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=6.7e-29 Score=249.39 Aligned_cols=200 Identities=21% Similarity=0.289 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCce
Q 005222 115 VQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKS 194 (708)
Q Consensus 115 ~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 194 (708)
-+..+++|+++++.++..++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 39 ~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~---------- 108 (239)
T TIGR02529 39 FLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK---------- 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----------
Confidence 3578899999999998888988999999999999999999999999999999999999999999988632
Q ss_pred EEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhh
Q 005222 195 YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKV 274 (708)
Q Consensus 195 ~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ 274 (708)
..+|+|+||||||+++++. |. ++.+. +.++||++||+.|.+.+ +++. .+||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~~--G~--i~~~~-~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILKK--GK--VIYSA-DEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEEC--Ce--EEEEE-eeecchHHHHHHHHHHh--------CCCH-----------HHHHHHHHh
Confidence 2599999999999999763 43 33333 67899999999887544 3322 789999987
Q ss_pred cCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhH
Q 005222 275 LSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSL 354 (708)
Q Consensus 275 Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~ 354 (708)
++ +.+++.+++.++++++...+++.|++. .++.|+|+||+|++|.+++.+++.
T Consensus 165 ~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 165 HK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 54 145677899999999999999999864 457899999999999999999999
Q ss_pred hCCCCCCCCCchhhHhchHHH
Q 005222 355 FGREPRRSLNASECVARGCAL 375 (708)
Q Consensus 355 fg~~v~~~~n~~eava~GAa~ 375 (708)
||.++..+.||++++|.|||+
T Consensus 218 lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 LGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hCCCcccCCCCCeehhheeec
Confidence 999999999999999999985
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.95 E-value=1.2e-26 Score=237.19 Aligned_cols=202 Identities=22% Similarity=0.307 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCce
Q 005222 115 VQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKS 194 (708)
Q Consensus 115 ~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 194 (708)
-+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|...
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 4456778888999998888888999999999999999999999999999999999999999999887531
Q ss_pred EEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhh
Q 005222 195 YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKV 274 (708)
Q Consensus 195 ~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ 274 (708)
..+++|+|||||+++++. ++.+ +.+ ++.++||++||+.|++++. ++ +.+||++|+.
T Consensus 136 ~~~vvDIGggtt~i~v~~--~g~~--~~~-~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~ 191 (267)
T PRK15080 136 NGAVVDIGGGTTGISILK--DGKV--VYS-ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRD 191 (267)
T ss_pred CcEEEEeCCCcEEEEEEE--CCeE--EEE-ecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhc
Confidence 158999999999999975 4433 333 3789999999999987652 22 2778999977
Q ss_pred cCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhH
Q 005222 275 LSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSL 354 (708)
Q Consensus 275 Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~ 354 (708)
++ +++++.++++++++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.
T Consensus 192 ~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~ 244 (267)
T PRK15080 192 PK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQ 244 (267)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHH
Confidence 53 357889999999999999999999864 578999999999999999999999
Q ss_pred hCCCCCCCCCchhhHhchHHHHH
Q 005222 355 FGREPRRSLNASECVARGCALQC 377 (708)
Q Consensus 355 fg~~v~~~~n~~eava~GAa~~a 377 (708)
||.++....||+.++|.|||++|
T Consensus 245 lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 245 TGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred hCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999999875
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.90 E-value=4.2e-22 Score=215.04 Aligned_cols=194 Identities=16% Similarity=0.268 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcc
Q 005222 151 LQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLG 230 (708)
Q Consensus 151 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lG 230 (708)
...+.+.+|++.||+++..++.||.|+|++|.... .....++|+|+||||||++++. .+.+.. .....+|
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-----~~~~~~~vvDiG~gtt~i~i~~--~g~~~~---~~~i~~G 227 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-----EKELGVCLIDIGGGTTDIAVYT--GGSIRY---TKVIPIG 227 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-----hhcCCEEEEEeCCCcEEEEEEE--CCEEEE---Eeeecch
Confidence 45678889999999999999999999999885322 3456799999999999999986 343322 2357899
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCC------CeeeEEeccccCCcceEEEeCHHHHH
Q 005222 231 GRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSAN------AEAPLNIECLMDEKDVRGFIKREEFE 304 (708)
Q Consensus 231 G~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~------~~~~i~i~~l~~~~d~~~~itr~~fe 304 (708)
|++||+.|.+.+. . .+.+||++|+.++.. ....+.++.+. .+....|+|++|+
T Consensus 228 G~~it~~i~~~l~--------~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~ 286 (371)
T TIGR01174 228 GNHITKDIAKALR--------T-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHHHHHhC--------C-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHH
Confidence 9999999876431 1 137899999998753 23456665542 3566899999999
Q ss_pred HHhhhhhHHHHHHHH-HHHHHcCCCCCCccE-EEEecCCCChHHHHHHHHhHhCCCCCCC------------CCchhhHh
Q 005222 305 ELASGLTEKIAIPCR-KALADAGLHVDKIHS-VEIVGSGSRIPAITRLLTSLFGREPRRS------------LNASECVA 370 (708)
Q Consensus 305 ~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~srip~v~~~l~~~fg~~v~~~------------~n~~eava 370 (708)
+++++.++++...++ +.|+.++.. .+++. |+|+||+|++|.+++++++.||.++... -+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999998876 57776 9999999999999999999998654211 26778888
Q ss_pred chHHHH
Q 005222 371 RGCALQ 376 (708)
Q Consensus 371 ~GAa~~ 376 (708)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 888753
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.88 E-value=7.4e-21 Score=207.64 Aligned_cols=196 Identities=13% Similarity=0.156 Sum_probs=149.1
Q ss_pred HHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchH
Q 005222 153 RREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGR 232 (708)
Q Consensus 153 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~ 232 (708)
.+.+.+|++.|||++..++.||.|+|.++.... .++..++++|+||||||++++. +|.+. . ....++||+
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-----e~~~gv~vvDiGggtTdisv~~--~G~l~--~-~~~i~~GG~ 237 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTED-----ERELGVCVVDIGGGTMDIAVYT--GGALR--H-TKVIPYAGN 237 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-----hhhcCeEEEEeCCCceEEEEEE--CCEEE--E-EeeeechHH
Confidence 344567999999999999999999999885432 3467799999999999999996 44432 2 225789999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCC------CCeeeEEeccccCCcceEEEeCHHHHHHH
Q 005222 233 DFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSA------NAEAPLNIECLMDEKDVRGFIKREEFEEL 306 (708)
Q Consensus 233 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~------~~~~~i~i~~l~~~~d~~~~itr~~fe~~ 306 (708)
+|++.|+..+. ++ +..||++|+.+.. .....+.++.+.+. ....++|.+|.++
T Consensus 238 ~it~dIa~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~i 296 (420)
T PRK09472 238 VVTSDIAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEV 296 (420)
T ss_pred HHHHHHHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHH
Confidence 99999985542 21 2789999976532 12345666654322 2248999999999
Q ss_pred hhhhhHHHHHHHHH-------HHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCC------------CCCchh
Q 005222 307 ASGLTEKIAIPCRK-------ALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRR------------SLNASE 367 (708)
Q Consensus 307 ~~~~~~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~------------~~n~~e 367 (708)
+.+.++++...+++ .|..+++....++.|+|+||+|++|.+++++++.|+.++.. ..+|..
T Consensus 297 i~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ 376 (420)
T PRK09472 297 IEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYY 376 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHH
Confidence 99977777766654 45666777778899999999999999999999999865432 248999
Q ss_pred hHhchHHHHHHH
Q 005222 368 CVARGCALQCAM 379 (708)
Q Consensus 368 ava~GAa~~a~~ 379 (708)
|+|.|+++++..
T Consensus 377 ata~Gl~~~~~~ 388 (420)
T PRK09472 377 STAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHHhhh
Confidence 999999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.77 E-value=2e-16 Score=168.04 Aligned_cols=206 Identities=20% Similarity=0.267 Sum_probs=163.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEE
Q 005222 140 CVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMK 219 (708)
Q Consensus 140 ~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~ 219 (708)
.++++|..+ -+.|.+|++.+|+++..++-+|.|+|.+..... .+.-.++++|+||||||++++.-. .
T Consensus 158 hvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d-----EkelGv~lIDiG~GTTdIai~~~G--~-- 224 (418)
T COG0849 158 HVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTED-----EKELGVALIDIGGGTTDIAIYKNG--A-- 224 (418)
T ss_pred EEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc-----cHhcCeEEEEeCCCcEEEEEEECC--E--
Confidence 355565543 567889999999999999999999998765432 567789999999999999998744 3
Q ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCC------CeeeEEeccccCCcc
Q 005222 220 VLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSAN------AEAPLNIECLMDEKD 293 (708)
Q Consensus 220 v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~------~~~~i~i~~l~~~~d 293 (708)
+..+. ..++||++++..|+.-|.-. . ..||++|...... ....+.++...++
T Consensus 225 l~~~~-~ipvgG~~vT~DIa~~l~t~--------~-----------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~-- 282 (418)
T COG0849 225 LRYTG-VIPVGGDHVTKDIAKGLKTP--------F-----------EEAERIKIKYGSALISLADDEETIEVPSVGSD-- 282 (418)
T ss_pred EEEEe-eEeeCccHHHHHHHHHhCCC--------H-----------HHHHHHHHHcCccccCcCCCcceEecccCCCc--
Confidence 33333 67999999999998765322 1 7789999887422 3345677665333
Q ss_pred eEEEeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCC--CC----------
Q 005222 294 VRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREP--RR---------- 361 (708)
Q Consensus 294 ~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v--~~---------- 361 (708)
....++|..+.+++++.+.++..+++..|++.++...-...|+|+||++.+|.+.+..++.|+.++ ..
T Consensus 283 ~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~ 362 (418)
T COG0849 283 IPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDI 362 (418)
T ss_pred ccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhh
Confidence 367899999999999999999999999999999976667899999999999999999999997543 11
Q ss_pred CCCchhhHhchHHHHHHHh
Q 005222 362 SLNASECVARGCALQCAML 380 (708)
Q Consensus 362 ~~n~~eava~GAa~~a~~~ 380 (708)
..+|..+.|.|..++++..
T Consensus 363 ~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 363 ARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred ccCchhhhhHHHHHHHhhc
Confidence 2368889999999988754
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.69 E-value=5.7e-16 Score=167.70 Aligned_cols=234 Identities=15% Similarity=0.114 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHH-HHHcCCcceeeecchHHHHHhccccccCCCCCCceE
Q 005222 117 VMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNA-ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSY 195 (708)
Q Consensus 117 l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~ 195 (708)
.+..+++++....-. ....-..+++++|..++..+|+.+.+. .+..|++.+.++++|.+|+++++. .+
T Consensus 76 ~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~ 144 (371)
T cd00012 76 DMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR----------TT 144 (371)
T ss_pred HHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC----------Ce
Confidence 444556665543211 122245799999999998888888775 677899999999999999988763 57
Q ss_pred EEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhc
Q 005222 196 IAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVL 275 (708)
Q Consensus 196 vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~L 275 (708)
.+|+|+|+++|+++.+. +|.. +.......++||.++|+.|.+++..+.. ..+.. .-...++.+|+.+
T Consensus 145 ~lVVDiG~~~t~i~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~ 211 (371)
T cd00012 145 GLVVDSGDGVTHVVPVY--DGYV-LPHAIKRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKL 211 (371)
T ss_pred EEEEECCCCeeEEEEEE--CCEE-chhhheeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhh
Confidence 89999999999998875 3432 2222335789999999999998864321 01111 1124466666665
Q ss_pred CCCCe-----------------eeEEeccccCCcceEEEeCHHHHH---HHhhh-----hhHHHHHHHHHHHHHcCC--C
Q 005222 276 SANAE-----------------APLNIECLMDEKDVRGFIKREEFE---ELASG-----LTEKIAIPCRKALADAGL--H 328 (708)
Q Consensus 276 s~~~~-----------------~~i~i~~l~~~~d~~~~itr~~fe---~~~~~-----~~~~i~~~i~~~l~~~~~--~ 328 (708)
..-.. ..+.+ .++ ..+.++.+.|. -++.| ....+.+.|.+++..... .
T Consensus 212 ~~v~~~~~~~~~~~~~~~~~~~~~~~l---pd~--~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~ 286 (371)
T cd00012 212 CYVALDIEEEQDKSAKETSLLEKTYEL---PDG--RTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLR 286 (371)
T ss_pred eeecCCHHHHHHhhhccCCccceeEEC---CCC--eEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHH
Confidence 32110 01111 122 24556655442 22333 233677888888877532 2
Q ss_pred CCCccEEEEecCCCChHHHHHHHHhHhCC----------CCCCCCCchhhHhchHHHHHHH
Q 005222 329 VDKIHSVEIVGSGSRIPAITRLLTSLFGR----------EPRRSLNASECVARGCALQCAM 379 (708)
Q Consensus 329 ~~~i~~ViLvGG~srip~v~~~l~~~fg~----------~v~~~~n~~eava~GAa~~a~~ 379 (708)
..-++.|+|+||+|++|.+.++|.+.++. .+....+|..++-+||+++|..
T Consensus 287 ~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 287 KDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 23357899999999999999999988851 1234567889999999999864
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.66 E-value=2.6e-16 Score=144.50 Aligned_cols=196 Identities=25% Similarity=0.300 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEE
Q 005222 120 MLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFV 199 (708)
Q Consensus 120 ~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~ 199 (708)
.+.+.+++.+++++|..+....-++|+.-.+...+...+..+.||+.++.+++||+|||.-.++ ..-.|+
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l----------~dg~VV 145 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQL----------DDGGVV 145 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhcc----------CCCcEE
Confidence 5678889999999999999999999999877778888888999999999999999999854433 234789
Q ss_pred EeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCC
Q 005222 200 DIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA 279 (708)
Q Consensus 200 D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~ 279 (708)
|+|||||-+|+++-. +|+.++ |..-||.+++..|+- .|++++ ++||..|+.--...
T Consensus 146 DiGGGTTGIsi~kkG----kViy~A-DEpTGGtHmtLvlAG--------~ygi~~-----------EeAE~~Kr~~k~~~ 201 (277)
T COG4820 146 DIGGGTTGISIVKKG----KVIYSA-DEPTGGTHMTLVLAG--------NYGISL-----------EEAEQYKRGHKKGE 201 (277)
T ss_pred EeCCCcceeEEEEcC----cEEEec-cCCCCceeEEEEEec--------ccCcCH-----------hHHHHhhhccccch
Confidence 999999999999855 566666 889999998877653 345544 66777775432111
Q ss_pred eeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCC
Q 005222 280 EAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREP 359 (708)
Q Consensus 280 ~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v 359 (708)
+.=..+.|+++++.+.+.+.++..+ +..+.|+||+|.-|.+.+..++.|+.++
T Consensus 202 ----------------------Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v 254 (277)
T COG4820 202 ----------------------EIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQV 254 (277)
T ss_pred ----------------------hcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhcccc
Confidence 1112457999999999999998766 4569999999999999999999999999
Q ss_pred CCCCCchhhHhchHHHH
Q 005222 360 RRSLNASECVARGCALQ 376 (708)
Q Consensus 360 ~~~~n~~eava~GAa~~ 376 (708)
..+..|....-+|-|.-
T Consensus 255 ~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 255 HLPQHPLYMTPLGIASS 271 (277)
T ss_pred ccCCCcceechhhhhhc
Confidence 88888877777776643
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.62 E-value=5.2e-15 Score=160.40 Aligned_cols=297 Identities=16% Similarity=0.166 Sum_probs=181.8
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCC---------cEEEcHHHHHhHhcCCcchHHHHHHhhC
Q 005222 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK---------QRFIGAAGYASAMMHPKSTVSQVKRLIG 72 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~---------~~~~G~~A~~~~~~~~~~~~~~~k~llg 72 (708)
++|+||+||.++++++..+..+.+ .+||+|+...+ ..++|++|.... +
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQV--------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcE--------EccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 479999999999999876554333 35888876532 135677663210 0
Q ss_pred CCCCChHHHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCC--CcceEEEEecCCCCH
Q 005222 73 RRYGDPVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEM--PVVDCVIGVPSYFTD 150 (708)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~--~~~~~VitVPa~~~~ 150 (708)
.. .-..|+ .+|.+ .--+.+..+++++... .++. .-..++|+.|...+.
T Consensus 59 ~~---------~~~~P~-----~~G~i-------------~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 59 GL---------ELKYPI-----EHGIV-------------ENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred Cc---------eecCCC-----cCCEE-------------eCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 00 011222 13422 1123455666666553 2222 235699999999999
Q ss_pred HHHHHHHHHH-HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCc
Q 005222 151 LQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSL 229 (708)
Q Consensus 151 ~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~l 229 (708)
.+|+.+.+.+ +..|++.+.++++|.+|+++++ ..+.+|+|+|+++|+++.+. +|.. +.......++
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g----------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~ 175 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASG----------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDI 175 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC----------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccC
Confidence 9999998886 5779999999999999998875 35789999999999999875 3432 2222234689
Q ss_pred chHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCC-------------------eeeEEeccccC
Q 005222 230 GGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA-------------------EAPLNIECLMD 290 (708)
Q Consensus 230 GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~-------------------~~~i~i~~l~~ 290 (708)
||.++|+.|.+++...- ...... .-...++.+|+.+..-. ...+.+ .+
T Consensus 176 GG~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l---pd 242 (373)
T smart00268 176 AGRDLTDYLKELLSERG---YQFNSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL---PD 242 (373)
T ss_pred cHHHHHHHHHHHHHhcC---CCCCcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC---CC
Confidence 99999999998876510 001110 11234555555542110 001111 12
Q ss_pred CcceEEEeCHHHH---HHHhhhh-----hHHHHHHHHHHHHHcCC--CCCCccEEEEecCCCChHHHHHHHHhHhC----
Q 005222 291 EKDVRGFIKREEF---EELASGL-----TEKIAIPCRKALADAGL--HVDKIHSVEIVGSGSRIPAITRLLTSLFG---- 356 (708)
Q Consensus 291 ~~d~~~~itr~~f---e~~~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~srip~v~~~l~~~fg---- 356 (708)
+.. +.+..+.| |.++.|. ...+.+.|.++|..+.. ...-.+.|+|+||+|++|.+.++|.+.+.
T Consensus 243 g~~--~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p 320 (373)
T smart00268 243 GNT--IKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAP 320 (373)
T ss_pred CCE--EEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCC
Confidence 322 33443333 2223321 23677778888776532 11123679999999999999999988872
Q ss_pred --CC--CCCCCCchhhHhchHHHHHHH
Q 005222 357 --RE--PRRSLNASECVARGCALQCAM 379 (708)
Q Consensus 357 --~~--v~~~~n~~eava~GAa~~a~~ 379 (708)
.+ +....++..++=.||+++|..
T Consensus 321 ~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 321 KKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred CCceeEEecCCCCccceEeCcccccCc
Confidence 11 233445667777888877754
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.60 E-value=1.5e-13 Score=145.80 Aligned_cols=209 Identities=13% Similarity=0.165 Sum_probs=139.5
Q ss_pred EEEEecCCCCHHHH-HHHHHHHHHc------C------CcceeeecchHHHHHhccccccCC---CCCCceEEEEEEeCC
Q 005222 140 CVIGVPSYFTDLQR-REYLNAASIA------G------LRPLRLIHDCTATALGYGIYKTDF---ANGGKSYIAFVDIGH 203 (708)
Q Consensus 140 ~VitVPa~~~~~qr-~~l~~Aa~~A------G------l~~~~li~Ep~Aaal~y~~~~~~~---~~~~~~~vlv~D~Gg 203 (708)
++...|..+-..++ +.+++..... | +..+.++++|.+|.+.+....... .......++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 44589988854443 6676654321 1 235778999999988776643211 112345789999999
Q ss_pred cceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeE
Q 005222 204 SDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPL 283 (708)
Q Consensus 204 gt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i 283 (708)
||||++++. ++.+ +....+....|..++.+.|.+++..+. ++..+. + .++.+..+.- .+
T Consensus 195 ~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~---~~ie~~l~~g----------~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASIT--P---YMLEKGLEYG----------AC 253 (344)
T ss_pred CcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhC---CCCCCC--H---HHHHHHHHcC----------cE
Confidence 999999985 4444 334445678999999999998885332 233322 1 1222221111 11
Q ss_pred EeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCC
Q 005222 284 NIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSL 363 (708)
Q Consensus 284 ~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~ 363 (708)
.+. .+.. +.+ ++++.++++++++++...+...+.. ..+++.|+|+||++++ +++.|++.|+. +....
T Consensus 254 ~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~~~~~ 320 (344)
T PRK13917 254 KLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-VEKAD 320 (344)
T ss_pred EeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-eEEcC
Confidence 111 1111 122 4667889999999999888888754 3478999999999987 88999999984 35678
Q ss_pred CchhhHhchHHHHHHHhCC
Q 005222 364 NASECVARGCALQCAMLSP 382 (708)
Q Consensus 364 n~~eava~GAa~~a~~~~~ 382 (708)
||..|.|+|...+|..+..
T Consensus 321 ~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 321 ESQFANVRGYYKYGELLKN 339 (344)
T ss_pred ChHHHHHHHHHHHHHHHhc
Confidence 9999999999999986543
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.49 E-value=6e-12 Score=137.90 Aligned_cols=206 Identities=12% Similarity=0.066 Sum_probs=131.5
Q ss_pred ceEEEEecCCCCHHHHHHHHHHH-HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCC
Q 005222 138 VDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAG 216 (708)
Q Consensus 138 ~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~ 216 (708)
..+++|.|+.++..+|+.+.+.+ +..+.+.+.+..+|.+++++++............+-||||+|+|+|+++.+. +|
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~G 180 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--DG 180 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--CC
Confidence 45899999999999999988776 5568899999999999998763321100001234679999999999998764 34
Q ss_pred eEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCC-----------------
Q 005222 217 HMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA----------------- 279 (708)
Q Consensus 217 ~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~----------------- 279 (708)
.. +.......++||+++++.|.+++.++ +..+... ..+..++.+|+.++...
T Consensus 181 ~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 249 (414)
T PTZ00280 181 YV-IGSSIKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNH 249 (414)
T ss_pred EE-cccceEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccc
Confidence 32 22222245899999999999988542 1112110 11234666666653211
Q ss_pred eeeEEeccccCCcceEEEeCHHHHH---HHhhhhh------HHHHHHHHHHHHHcCC--CCCCccEEEEecCCCChHHHH
Q 005222 280 EAPLNIECLMDEKDVRGFIKREEFE---ELASGLT------EKIAIPCRKALADAGL--HVDKIHSVEIVGSGSRIPAIT 348 (708)
Q Consensus 280 ~~~i~i~~l~~~~d~~~~itr~~fe---~~~~~~~------~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~srip~v~ 348 (708)
...+..+...++....+.|..+.|. -++.|-+ ..+.+.|.+++.++.. ...-.+.|+|+||+|.+|.+.
T Consensus 250 ~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~ 329 (414)
T PTZ00280 250 FKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFD 329 (414)
T ss_pred cceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHH
Confidence 0112222222233456778877764 2333321 2456777777776532 222346899999999999999
Q ss_pred HHHHhHhC
Q 005222 349 RLLTSLFG 356 (708)
Q Consensus 349 ~~l~~~fg 356 (708)
++|.+.+.
T Consensus 330 eRL~~El~ 337 (414)
T PTZ00280 330 KRLQRDVR 337 (414)
T ss_pred HHHHHHHH
Confidence 99998874
No 38
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.35 E-value=1.2e-11 Score=135.25 Aligned_cols=309 Identities=15% Similarity=0.181 Sum_probs=176.1
Q ss_pred eEEEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCC-----cEEEcHHHHHhHhcCCcchHHHHHHhhCCCCC
Q 005222 2 SVVGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEK-----QRFIGAAGYASAMMHPKSTVSQVKRLIGRRYG 76 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~-----~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 76 (708)
.+|-||+|+.++++++..+..|.. .+||+++.... ...+|..+... .+..
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~--------v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~-------------- 59 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRV--------VIPSVVGRPRDKNSSNDYYVGDEALSP---RSNL-------------- 59 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SE--------EEESEEEEESSSSSSSSCEETHHHHHT---GTGE--------------
T ss_pred CEEEEECCCceEEEEECCCCCCCC--------cCCCccccccccccceeEEeecccccc---hhhe--------------
Confidence 578999999999999975444332 35888776433 24677664220 0000
Q ss_pred ChHHHhhhccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHH
Q 005222 77 DPVVQKDLMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREY 156 (708)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l 156 (708)
.-..|+ .+|. +.--+.+..+++++.... -.....-..++++.|..++..+|+.+
T Consensus 60 -------~~~~p~-----~~g~-------------i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~l 113 (393)
T PF00022_consen 60 -------ELRSPI-----ENGV-------------IVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREKL 113 (393)
T ss_dssp -------EEEESE-----ETTE-------------ESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHHH
T ss_pred -------eeeeec-----cccc-------------cccccccccccccccccc-cccccccceeeeeccccCCchhhhhh
Confidence 000111 1221 111234455666655432 11122345699999999999999988
Q ss_pred HHHH-HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHH
Q 005222 157 LNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFD 235 (708)
Q Consensus 157 ~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 235 (708)
.+.+ +..|++.+.+++++.+|+++++. .+-||||+|.+.|.|+.+. +|.. +.......++||.+++
T Consensus 114 ~e~lfE~~~~~~v~~~~~~~~a~~~~g~----------~tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt 180 (393)
T PF00022_consen 114 AEILFEKFGVPSVYFIPSPLLALYASGR----------TTGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLT 180 (393)
T ss_dssp HHHHHHTS--SEEEEEEHHHHHHHHTTB----------SSEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHH
T ss_pred hhhhhcccccceeeeeeccccccccccc----------ccccccccceeeeeeeeee--eccc-cccccccccccHHHHH
Confidence 7765 57799999999999999988764 3569999999999988763 4432 2112224579999999
Q ss_pred HHHHHHHHHH-HH--Hhhccccc----CCHHHHHHHHHHHHHhhhhc---CC------------CCeeeEEeccccCCcc
Q 005222 236 DVLFGYFAAK-FK--EQYKINVY----SNVRACIRLRAACEKLKKVL---SA------------NAEAPLNIECLMDEKD 293 (708)
Q Consensus 236 ~~l~~~l~~~-~~--~~~~~~~~----~~~~~~~rL~~~~e~~K~~L---s~------------~~~~~i~i~~l~~~~d 293 (708)
..|.+.+..+ +. ..+..... ...-....-...++.+|+.+ +. .....+.++ ++.
T Consensus 181 ~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~- 256 (393)
T PF00022_consen 181 EYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ- 256 (393)
T ss_dssp HHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS-
T ss_pred HHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc-
Confidence 9999888763 10 00000000 00000011112233333332 11 112223332 332
Q ss_pred eEEEeCHHHHHHHhhhhhH----------------HHHHHHHHHHHHcCCCCC--CccEEEEecCCCChHHHHHHHHhHh
Q 005222 294 VRGFIKREEFEELASGLTE----------------KIAIPCRKALADAGLHVD--KIHSVEIVGSGSRIPAITRLLTSLF 355 (708)
Q Consensus 294 ~~~~itr~~fe~~~~~~~~----------------~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~srip~v~~~l~~~f 355 (708)
.+.+..+.| .+.+.+|+ .+.+.|.+++........ -...|+|+||+|++|.+.++|...+
T Consensus 257 -~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL 334 (393)
T PF00022_consen 257 -TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQEL 334 (393)
T ss_dssp -EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHH
T ss_pred -ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHh
Confidence 556666555 22333322 477788888877643211 1468999999999999999998777
Q ss_pred CC--------CCCCCC-CchhhHhchHHHHHHHh
Q 005222 356 GR--------EPRRSL-NASECVARGCALQCAML 380 (708)
Q Consensus 356 g~--------~v~~~~-n~~eava~GAa~~a~~~ 380 (708)
.. ++.... ++..++=.||+++|..-
T Consensus 335 ~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 335 RSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 31 223334 78899999999998743
No 39
>PTZ00452 actin; Provisional
Probab=99.32 E-value=2e-10 Score=123.84 Aligned_cols=214 Identities=16% Similarity=0.166 Sum_probs=136.0
Q ss_pred cceEEEEecCCCCHHHHHHHHHHH-HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeC
Q 005222 137 VVDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA 215 (708)
Q Consensus 137 ~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~ 215 (708)
-..+++|-|+..+..+|+.+.+.+ +..+.+.+.+.+.+.+++++++. .+-||||+|.+.|.++-+. +
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~----------~tglVVDiG~~~t~v~PV~--d 167 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK----------TIGLVVDSGEGVTHCVPVF--E 167 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC----------ceeeeecCCCCcceEEEEE--C
Confidence 456899999999999999987765 66788888899999999877642 4679999999999987764 4
Q ss_pred CeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCC----------------
Q 005222 216 GHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA---------------- 279 (708)
Q Consensus 216 ~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~---------------- 279 (708)
|.. +.......++||.++++.|.+.|... +..+... .. +..++.+|+.++...
T Consensus 168 G~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~ 236 (375)
T PTZ00452 168 GHQ-IPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQ 236 (375)
T ss_pred CEE-eccceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccCCc
Confidence 432 22222346799999999998877432 1112111 00 122444555543111
Q ss_pred eeeEEeccccCCcceEEEeCHHHHH---HHhhhhh-----HHHHHHHHHHHHHcCC--CCCCccEEEEecCCCChHHHHH
Q 005222 280 EAPLNIECLMDEKDVRGFIKREEFE---ELASGLT-----EKIAIPCRKALADAGL--HVDKIHSVEIVGSGSRIPAITR 349 (708)
Q Consensus 280 ~~~i~i~~l~~~~d~~~~itr~~fe---~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~srip~v~~ 349 (708)
...+.++ ++. .+.+..+.|. -+++|.+ ..+.+++.+++..+.. ...-.+.|+|+||+|.+|.+.+
T Consensus 237 ~~~y~LP---Dg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~ 311 (375)
T PTZ00452 237 DSPYKLP---DGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIAN 311 (375)
T ss_pred CceEECC---CCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHH
Confidence 0112222 232 3556666662 2223321 2356667777766532 2223468999999999999999
Q ss_pred HHHhHhC----C--C--CCCCCCchhhHhchHHHHHH
Q 005222 350 LLTSLFG----R--E--PRRSLNASECVARGCALQCA 378 (708)
Q Consensus 350 ~l~~~fg----~--~--v~~~~n~~eava~GAa~~a~ 378 (708)
+|...+. . + +..+.+...++=.|++++|.
T Consensus 312 RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 312 RLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 9987773 1 1 22334555677889888885
No 40
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.30 E-value=6e-11 Score=126.61 Aligned_cols=182 Identities=23% Similarity=0.301 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCC-CCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCc
Q 005222 151 LQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFAN-GGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSL 229 (708)
Q Consensus 151 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~-~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~l 229 (708)
..-+.+.++++.|||++..+--++.|.+-.|......++. .....++++|+|+.++.++++. +|.+.. .....+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f---~R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPIF---SRSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEEE---EEEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEEE---EEEEee
Confidence 4566788889999999887766666665444432222332 2456899999999999999975 554422 224689
Q ss_pred chHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhh
Q 005222 230 GGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASG 309 (708)
Q Consensus 230 GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~ 309 (708)
||.++++.|++.+. ++. ..|+..|..-+... +...+++.+
T Consensus 211 G~~~l~~~i~~~~~--------i~~-----------~~Ae~~k~~~~l~~---------------------~~~~~~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELG--------IDF-----------EEAEELKRSGGLPE---------------------EYDQDALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT----------H-----------HHHHHHHHHT---------------------------HHHHHHH
T ss_pred CHHHHHHHHHHhcC--------CCH-----------HHHHHHHhcCCCCc---------------------chHHHHHHH
Confidence 99999999986642 221 55666665421100 223344555
Q ss_pred hhHHHHHHHHHHHHH--cCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCC---------CCC----------Cchhh
Q 005222 310 LTEKIAIPCRKALAD--AGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPR---------RSL----------NASEC 368 (708)
Q Consensus 310 ~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~---------~~~----------n~~ea 368 (708)
.++++..-|.+.++- +......|+.|+|+||++++|.+.+.|++.+|.++. .+. .|..+
T Consensus 251 ~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~a 330 (340)
T PF11104_consen 251 FLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFA 330 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHH
Confidence 555565555555552 223345799999999999999999999999985441 111 25668
Q ss_pred HhchHHHHH
Q 005222 369 VARGCALQC 377 (708)
Q Consensus 369 va~GAa~~a 377 (708)
+|.|.|+..
T Consensus 331 vA~GLAlR~ 339 (340)
T PF11104_consen 331 VALGLALRG 339 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 999998764
No 41
>PTZ00004 actin-2; Provisional
Probab=99.30 E-value=2.3e-10 Score=123.86 Aligned_cols=214 Identities=11% Similarity=0.107 Sum_probs=137.3
Q ss_pred cceEEEEecCCCCHHHHHHHHHHH-HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeC
Q 005222 137 VVDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA 215 (708)
Q Consensus 137 ~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~ 215 (708)
-..+++|-|..++..+|+.+.+.+ +..|++.+.+..++.+++++++. .+-+|+|+|.+.|+++.+. +
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~----------~tglVVDiG~~~t~v~pV~--d 168 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIY--E 168 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC----------ceEEEEECCCCcEEEEEEE--C
Confidence 456889999999999998877664 67799999999999999877642 4679999999999988764 3
Q ss_pred CeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCC----------------
Q 005222 216 GHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA---------------- 279 (708)
Q Consensus 216 ~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~---------------- 279 (708)
|.. +.......++||.++++.|.+.+..+ +..+.. ... ...++.+|+.+....
T Consensus 169 G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (378)
T PTZ00004 169 GYS-LPHAIHRLDVAGRDLTEYMMKILHER-----GTTFTT--TAE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDK 237 (378)
T ss_pred CEE-eecceeeecccHHHHHHHHHHHHHhc-----CCCCCc--HHH---HHHHHHHhhcceeecCCHHHHHhhhhcCccc
Confidence 432 22333356899999999999987532 111111 111 123455555542110
Q ss_pred -eeeEEeccccCCcceEEEeCHHHHH---HHhhhh------hHHHHHHHHHHHHHcCCC--CCCccEEEEecCCCChHHH
Q 005222 280 -EAPLNIECLMDEKDVRGFIKREEFE---ELASGL------TEKIAIPCRKALADAGLH--VDKIHSVEIVGSGSRIPAI 347 (708)
Q Consensus 280 -~~~i~i~~l~~~~d~~~~itr~~fe---~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~srip~v 347 (708)
...+.++ ++. .+.+..+.|. -++.|- ...+.+.|.+++.++... ..-...|+|+||+|.+|.+
T Consensus 238 ~~~~y~lP---dg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf 312 (378)
T PTZ00004 238 YEESYELP---DGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGL 312 (378)
T ss_pred cceEEECC---CCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCH
Confidence 1112222 232 3456665552 344442 234566777777665322 2224689999999999999
Q ss_pred HHHHHhHhC--C------CCCCCCCchhhHhchHHHHHH
Q 005222 348 TRLLTSLFG--R------EPRRSLNASECVARGCALQCA 378 (708)
Q Consensus 348 ~~~l~~~fg--~------~v~~~~n~~eava~GAa~~a~ 378 (708)
.++|...+. . .+..+.++..++=+||+++|.
T Consensus 313 ~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 313 PERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 999988773 1 123344667777788888775
No 42
>PTZ00281 actin; Provisional
Probab=99.29 E-value=1.5e-10 Score=125.09 Aligned_cols=215 Identities=14% Similarity=0.139 Sum_probs=137.5
Q ss_pred cceEEEEecCCCCHHHHHHHHHH-HHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeC
Q 005222 137 VVDCVIGVPSYFTDLQRREYLNA-ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA 215 (708)
Q Consensus 137 ~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~ 215 (708)
-..+++|-|..+...+|+.+.+. .+..+++.+.+...+.+++++++. .+-||||+|.+.|.++-+. +
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~----------~tglVVDiG~~~t~v~PV~--d 168 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR----------TTGIVMDSGDGVSHTVPIY--E 168 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC----------ceEEEEECCCceEEEEEEE--e
Confidence 35689999999999999998875 467788889999999999877642 4679999999999987553 2
Q ss_pred CeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCC----------------
Q 005222 216 GHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA---------------- 279 (708)
Q Consensus 216 ~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~---------------- 279 (708)
|.. +.......++||.++++.|.+.|... +..+.. . .- +..++.+|+.++...
T Consensus 169 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (376)
T PTZ00281 169 GYA-LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTAASSSAL 237 (376)
T ss_pred ccc-chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhhhcCccc
Confidence 322 22233356899999999999877542 111111 0 11 133556666643111
Q ss_pred eeeEEeccccCCcceEEEeCHHHH---HHHhhhhh-----HHHHHHHHHHHHHcCCC--CCCccEEEEecCCCChHHHHH
Q 005222 280 EAPLNIECLMDEKDVRGFIKREEF---EELASGLT-----EKIAIPCRKALADAGLH--VDKIHSVEIVGSGSRIPAITR 349 (708)
Q Consensus 280 ~~~i~i~~l~~~~d~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~srip~v~~ 349 (708)
...+.+ -++. .+.|..+.| |-++.|-+ ..+.+.|.+++..+... ..-.+.|+|+||+|.+|.+.+
T Consensus 238 ~~~y~L---Pdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~ 312 (376)
T PTZ00281 238 EKSYEL---PDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIAD 312 (376)
T ss_pred ceeEEC---CCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHH
Confidence 011222 1222 345665544 23333321 14566777777665322 122368999999999999999
Q ss_pred HHHhHhC----C--C--CCCCCCchhhHhchHHHHHHH
Q 005222 350 LLTSLFG----R--E--PRRSLNASECVARGCALQCAM 379 (708)
Q Consensus 350 ~l~~~fg----~--~--v~~~~n~~eava~GAa~~a~~ 379 (708)
+|...+. . + +..+.++..++=+|++++|..
T Consensus 313 RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 313 RMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 9987773 1 1 233446677888899888863
No 43
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.28 E-value=3.5e-10 Score=121.54 Aligned_cols=165 Identities=16% Similarity=0.207 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCC-CCCce-EEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCC
Q 005222 150 DLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFA-NGGKS-YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDS 227 (708)
Q Consensus 150 ~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~-~~~~~-~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~ 227 (708)
....+.+.++++.||++...+..+|.|.+-.+.+....+. ..... .++++|+|+++|+++++. +|.+.. ....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--~g~~~~---~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--PGRMLF---TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--CCeEEE---EEEe
Confidence 4567788999999999999999999998755531100111 12233 499999999999999985 443322 2257
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHh
Q 005222 228 SLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELA 307 (708)
Q Consensus 228 ~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~ 307 (708)
.+||.+|++.|.+.+ +++. ..||+.|..-.... . . -.+++
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~~-----------~~Ae~~k~~~~~~~-----------~--~--------~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLNP-----------EEAGEAKQQGGLPL-----------L--Y--------DPEVL 256 (348)
T ss_pred echHHHHHHHHHHHc--------CCCH-----------HHHHHHHhcCCCCC-----------c--h--------hHHHH
Confidence 899999999887433 3322 66888876432111 0 0 02344
Q ss_pred hhhhHHHHHHHHHHHHHc--CCCCCCccEEEEecCCCChHHHHHHHHhHhCCCC
Q 005222 308 SGLTEKIAIPCRKALADA--GLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREP 359 (708)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v 359 (708)
++.++++..-|.+.|+-. ......++.|+|+||+++++.+.+.+++.||.++
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v 310 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPT 310 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCe
Confidence 555556666666665432 2233468999999999999999999999998654
No 44
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.27 E-value=2.6e-10 Score=120.46 Aligned_cols=208 Identities=15% Similarity=0.158 Sum_probs=130.0
Q ss_pred CcceEEEEecCCCCHHHHHHHHHHHHHc---------CCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcce
Q 005222 136 PVVDCVIGVPSYFTDLQRREYLNAASIA---------GLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDT 206 (708)
Q Consensus 136 ~~~~~VitVPa~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~ 206 (708)
.+..+|+..|..+...+|+.+++..... -+..+.+++||.+|.+.+........ .....++|+|+|++|+
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~-~~~~~~lVIDIG~~Tt 179 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLL-TGKEQSLIIDPGYFTF 179 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcc-cCcCcEEEEecCCCee
Confidence 3557999999999988999999886532 23567899999999888765332111 2456789999999999
Q ss_pred EEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEec
Q 005222 207 QVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIE 286 (708)
Q Consensus 207 dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~ 286 (708)
|+.++. ++.+ +....+....|-.++-+.|.+.+.+++ +.+...+.. ++-.+.+.-|. +.+
T Consensus 180 D~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~---~i~~~l~~g~~---------~~~- 239 (320)
T TIGR03739 180 DWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDID---RIDLALRTGKQ---------PRI- 239 (320)
T ss_pred eeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHH---HHHHHHHhCCc---------eee-
Confidence 998764 4444 444555678999999888888776654 333111111 11111111110 000
Q ss_pred cccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCC-CCCCCCCc
Q 005222 287 CLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGR-EPRRSLNA 365 (708)
Q Consensus 287 ~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~-~v~~~~n~ 365 (708)
.+. .+.|+ +.+ +.....++++..-+...+ + ...+++.|+|+||++. .+++.|++.|+. .+....||
T Consensus 240 ---~gk--~~di~-~~~-~~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp 306 (320)
T TIGR03739 240 ---YQK--PVDIK-RCL-ELAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEP 306 (320)
T ss_pred ---cce--ecCch-HHH-HHHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCc
Confidence 011 11122 112 223333333333333333 1 1246899999999987 568999999974 44566799
Q ss_pred hhhHhchHHHHH
Q 005222 366 SECVARGCALQC 377 (708)
Q Consensus 366 ~eava~GAa~~a 377 (708)
..|.|+|-..++
T Consensus 307 ~~ANarG~~~~g 318 (320)
T TIGR03739 307 MFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.23 E-value=8.9e-10 Score=118.87 Aligned_cols=214 Identities=9% Similarity=0.056 Sum_probs=136.6
Q ss_pred cceEEEEecCCCCHHHHHHHHHHH-HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeC
Q 005222 137 VVDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA 215 (708)
Q Consensus 137 ~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~ 215 (708)
-..+++|-|+.++..+|+.+.+.+ +..+++.+.+.+.+.+++++++. .+-+|||+|.+.|.++-+. +
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~----------~tglVVD~G~~~t~v~PV~--~ 173 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK----------TNGTVLDCGDGVCHCVSIY--E 173 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC----------ceEEEEeCCCCceEEEEEE--C
Confidence 446889999999999999987664 66788889999999999877642 4789999999999987654 3
Q ss_pred CeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCC---------------e
Q 005222 216 GHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA---------------E 280 (708)
Q Consensus 216 ~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~---------------~ 280 (708)
|.. +.......++||.++++.|.+.+.+. +..... . .-+..++.+|+.+.... .
T Consensus 174 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~---~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~ 242 (380)
T PTZ00466 174 GYS-ITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT--S---AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTT 242 (380)
T ss_pred CEE-eecceeEecCchhHHHHHHHHHHHhc-----CCCCCc--H---HHHHHHHHHHHhCeEecCChHHHHhhccccccc
Confidence 432 22233346899999999999877532 111111 1 11233455555542110 0
Q ss_pred eeEEeccccCCcceEEEeCHHHH---HHHhhhhh-----HHHHHHHHHHHHHcCCC--CCCccEEEEecCCCChHHHHHH
Q 005222 281 APLNIECLMDEKDVRGFIKREEF---EELASGLT-----EKIAIPCRKALADAGLH--VDKIHSVEIVGSGSRIPAITRL 350 (708)
Q Consensus 281 ~~i~i~~l~~~~d~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~srip~v~~~ 350 (708)
..+.++ ++ ..+.|..+.| |-++.|-+ ..+.+.|.+.+.++... ..-...|+|+||+|.+|.+.++
T Consensus 243 ~~y~LP---dg--~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~R 317 (380)
T PTZ00466 243 LPYILP---DG--SQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDR 317 (380)
T ss_pred eeEECC---CC--cEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHH
Confidence 112221 23 2345666666 23333321 24566677777665322 2224689999999999999999
Q ss_pred HHhHhC----C--C--CCCCCCchhhHhchHHHHHH
Q 005222 351 LTSLFG----R--E--PRRSLNASECVARGCALQCA 378 (708)
Q Consensus 351 l~~~fg----~--~--v~~~~n~~eava~GAa~~a~ 378 (708)
|...+. . + +..+.++..++=+|++++|.
T Consensus 318 L~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 318 LLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 988873 1 1 23344566677789988876
No 46
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=1.6e-07 Score=94.46 Aligned_cols=164 Identities=16% Similarity=0.272 Sum_probs=108.5
Q ss_pred HHHHHHHHHHcCCcceeeecchHHHHHhccccccCC-CCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcch
Q 005222 153 RREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDF-ANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGG 231 (708)
Q Consensus 153 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~-~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG 231 (708)
-....+|++.|||....+--|..|.--+|...-..+ +......++|+|+|+..+.++++.-+ +.+.+. +..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~g----k~ly~r-~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDG----KILYTR-EVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECC----eeeeEe-eccCcH
Confidence 455678999999998888788888766665222221 22233447999999999999998744 344444 789999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhh
Q 005222 232 RDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLT 311 (708)
Q Consensus 232 ~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~ 311 (708)
+.+++.+.+.+ +.+. ..++.+|.....-. ++. -+-+.....++.
T Consensus 226 ~Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~~~P~-------------~y~----~~vl~~f~~~l~ 269 (354)
T COG4972 226 DQLTQEIQRAY--------SLTE-----------EKAEEIKRGGTLPT-------------DYG----SEVLRPFLGELT 269 (354)
T ss_pred HHHHHHHHHHh--------CCCh-----------hHhHHHHhCCCCCC-------------chh----HHHHHHHHHHHH
Confidence 99999987543 3333 45666776543211 111 112223334444
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCC
Q 005222 312 EKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREP 359 (708)
Q Consensus 312 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v 359 (708)
++|.+.|+-.+..++ ..+|+.++|.||++++-.+.+++.+.++.+.
T Consensus 270 ~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~~t 315 (354)
T COG4972 270 QEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSIPT 315 (354)
T ss_pred HHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCCCe
Confidence 444444444444444 3479999999999999999999999998654
No 47
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.94 E-value=1.9e-08 Score=106.07 Aligned_cols=173 Identities=14% Similarity=0.201 Sum_probs=97.3
Q ss_pred cceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHH
Q 005222 166 RPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAK 245 (708)
Q Consensus 166 ~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 245 (708)
..+.+++|+.||.+.+.... .+...+||+|+||+|+|++++. ++.-.+-...+...+|-..+-..+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~-----~~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDL-----DEDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS------TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred eeEEEEcccHHHHHHHHHhh-----cccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 46789999999998876542 2346799999999999999885 2222233334456899999988888776541
Q ss_pred HHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHHHHHHc
Q 005222 246 FKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADA 325 (708)
Q Consensus 246 ~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~ 325 (708)
+...+. ..++.+-.... .... +.....+.+. .+++.++++..++++..-|.+.+.
T Consensus 214 -----~~~~s~---------~~~~~ii~~~~--~~~~--~~~~i~~~~~-----~~~v~~~i~~~~~~l~~~i~~~~~-- 268 (318)
T PF06406_consen 214 -----GIDTSE---------LQIDDIIRNRK--DKGY--LRQVINDEDV-----IDDVSEVIEEAVEELINRILRELG-- 268 (318)
T ss_dssp -----SBHHHH---------HHHHHHHHTTT---HHH--HHHHSSSHHH-----HHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred -----cCCCcH---------HHHHHHHHhhh--ccce--ecccccchhh-----HHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 111100 01111100000 0000 0000011111 234444555555555544444443
Q ss_pred CCCCCCccEEEEecCCCChHHHHHHHHhHhC---CCCCCCCCchhhHhchHH
Q 005222 326 GLHVDKIHSVEIVGSGSRIPAITRLLTSLFG---REPRRSLNASECVARGCA 374 (708)
Q Consensus 326 ~~~~~~i~~ViLvGG~srip~v~~~l~~~fg---~~v~~~~n~~eava~GAa 374 (708)
...+++.|+||||++ ..+.+.|++.|+ ..+...-||..|-|+|-+
T Consensus 269 --~~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 269 --DFSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --TS-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hhccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 234788999999997 457889999987 356778899999999964
No 48
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.92 E-value=3.3e-08 Score=100.57 Aligned_cols=169 Identities=18% Similarity=0.239 Sum_probs=104.8
Q ss_pred eeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHH
Q 005222 169 RLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKE 248 (708)
Q Consensus 169 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~ 248 (708)
..++|.+|-+.+..... +..-.|+|+||..+-+.++. +|.+.-......+..|+..|.+.+++.+
T Consensus 73 ~~~~ei~~~~~g~~~~~-------~~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l------ 137 (248)
T TIGR00241 73 KIVTEISCHGKGANYLA-------PEARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL------ 137 (248)
T ss_pred CceEEhhHHHHHHHHHC-------CCCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc------
Confidence 36788888765443322 12235999999988888776 5654333345467788888888887654
Q ss_pred hhcccccCCHHHHHHHHHHHHHhhhhc----CCCCeeeEEecc-ccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHHHHH
Q 005222 249 QYKINVYSNVRACIRLRAACEKLKKVL----SANAEAPLNIEC-LMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALA 323 (708)
Q Consensus 249 ~~~~~~~~~~~~~~rL~~~~e~~K~~L----s~~~~~~i~i~~-l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~ 323 (708)
++++ ++++.++..- .-+....+..+. +... +.-..++ ++++..+++.+...+.+.+.
T Consensus 138 --~~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~~~ 199 (248)
T TIGR00241 138 --GVSV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEMLQ 199 (248)
T ss_pred --CCCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 3322 2233332221 111112222211 0000 0001222 35555666666666666554
Q ss_pred HcCCCCCCcc-EEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHH
Q 005222 324 DAGLHVDKIH-SVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCAL 375 (708)
Q Consensus 324 ~~~~~~~~i~-~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~ 375 (708)
..+ ++ .|+++||.+++|.+.+.+.+.++.++..+.+|..+.|+|||+
T Consensus 200 ~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 200 RLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred hcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 433 44 799999999999999999999999999999999999999996
No 49
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.91 E-value=1.8e-07 Score=95.37 Aligned_cols=116 Identities=21% Similarity=0.216 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH-HHcCCcceeeecchHHHHHhccccccCCCCCCce
Q 005222 116 QVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKS 194 (708)
Q Consensus 116 el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 194 (708)
+++.++++|..+.- -.....-..++||-|++=+...|+.+.+.+ +...++...|..+|+++|++.| ..
T Consensus 86 D~~~~~w~~~~~~~-Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G----------rs 154 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQ-LKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG----------RS 154 (426)
T ss_pred HHHHHHHHHHHhhh-hhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC----------CC
Confidence 35556666655421 112223346899999999999998877664 6667778888888888887654 35
Q ss_pred EEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHH
Q 005222 195 YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAK 245 (708)
Q Consensus 195 ~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 245 (708)
+.||+|+|++++.++-+. +|.+--.+.. ..++||+.++..+.+.|..+
T Consensus 155 talVvDiGa~~~svsPV~--DG~Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 155 TALVVDIGATHTSVSPVH--DGYVLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ceEEEEecCCCceeeeee--cceEeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 789999999999998763 4443333333 57899999999999998875
No 50
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.64 E-value=1.5e-07 Score=100.34 Aligned_cols=158 Identities=14% Similarity=0.101 Sum_probs=91.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHH------------cCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcce
Q 005222 139 DCVIGVPSYFTDLQRREYLNAASI------------AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDT 206 (708)
Q Consensus 139 ~~VitVPa~~~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~ 206 (708)
-.+||.+... ++.+++|++. ||++.-.++. |.|++.+.... ++...++++|+|||||
T Consensus 90 ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse------Eke~gVa~IDIGgGTT 158 (475)
T PRK10719 90 AVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE------ERNTRVLNIDIGGGTA 158 (475)
T ss_pred EEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh------hccCceEEEEeCCCce
Confidence 4678877644 4555556665 6776666666 88887655421 4577899999999999
Q ss_pred EEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEec
Q 005222 207 QVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIE 286 (708)
Q Consensus 207 dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~ 286 (708)
+++++.- | .++.+. ..++||+.++.. -+ ..+. .-.|. .++|++ ++-..++
T Consensus 159 ~iaVf~~--G--~l~~T~-~l~vGG~~IT~D-~~---------~~i~-yis~~-~~~l~~---~~~~~~~---------- 208 (475)
T PRK10719 159 NYALFDA--G--KVIDTA-CLNVGGRLIETD-SQ---------GRVT-YISPP-GQMILD---ELGLAIT---------- 208 (475)
T ss_pred EEEEEEC--C--EEEEEE-EEecccceEEEC-CC---------CCEE-EEChH-HHHHHH---HcCCCcc----------
Confidence 9999864 3 344444 678999988654 10 0010 00111 111111 1111111
Q ss_pred cccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHH-------HHHH-cCCC-CCCccEEEEecCCCCh
Q 005222 287 CLMDEKDVRGFIKREEFEELASGLTEKIAIPCRK-------ALAD-AGLH-VDKIHSVEIVGSGSRI 344 (708)
Q Consensus 287 ~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~-------~l~~-~~~~-~~~i~~ViLvGG~sri 344 (708)
.--.++.+++..+|+.+.+-+.+.+.. .|-. ..++ ...++.|.+.||-+..
T Consensus 209 -------~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 209 -------DGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred -------ccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 112456788888887766666655541 1111 1222 3568999999997654
No 51
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.63 E-value=1.1e-06 Score=95.62 Aligned_cols=98 Identities=19% Similarity=0.160 Sum_probs=70.5
Q ss_pred cceEEEEecCCCCHHHHHHHHHH-HHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeC
Q 005222 137 VVDCVIGVPSYFTDLQRREYLNA-ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEA 215 (708)
Q Consensus 137 ~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~ 215 (708)
-..+++|-|..+....|..+.+. ++...++.+.+..++.+++.+.+.. ..+.+|+|+|.+.|+|+-+- +
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~--------~~~g~ViD~G~~~t~v~PV~--D 175 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSS--------DETGLVIDSGDSVTHVIPVV--D 175 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCC--------CCceEEEEcCCCceeeEeee--c
Confidence 34699999999999998887665 4556666666666666666554321 14889999999999988663 2
Q ss_pred CeEEEEEEeCCCCcchHHHHHHHHHHHHHH
Q 005222 216 GHMKVLSHAFDSSLGGRDFDDVLFGYFAAK 245 (708)
Q Consensus 216 ~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 245 (708)
|. .+........+||++++..|.+.+...
T Consensus 176 G~-~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 176 GI-VLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred cc-cccccceeeecCcHHHHHHHHHHHhhc
Confidence 22 122223356799999999999888774
No 52
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.61 E-value=9.3e-06 Score=82.59 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=42.3
Q ss_pred cEEEEecCCCChHHHHHHHHhHhCCCCC-CCCCchhhHhchHHHHHHH
Q 005222 333 HSVEIVGSGSRIPAITRLLTSLFGREPR-RSLNASECVARGCALQCAM 379 (708)
Q Consensus 333 ~~ViLvGG~srip~v~~~l~~~fg~~v~-~~~n~~eava~GAa~~a~~ 379 (708)
..|+|+||.++.|.+.+.+++.+|.++. .+.+|..+.|+|||++|.-
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999998876 5778999999999999864
No 53
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.55 E-value=2e-05 Score=91.05 Aligned_cols=329 Identities=18% Similarity=0.174 Sum_probs=187.4
Q ss_pred EEcHHHHHhHhc----CCcchHHHHHHhhCCC--------CCChHHHhh----hccCCceeeecCCCCeEEEEE-ecC--
Q 005222 47 FIGAAGYASAMM----HPKSTVSQVKRLIGRR--------YGDPVVQKD----LMVLPFESCESPDGGISIKLK-YLG-- 107 (708)
Q Consensus 47 ~~G~~A~~~~~~----~~~~~~~~~k~llg~~--------~~~~~v~~~----~~~~~~~~~~~~~g~~~~~v~-~~~-- 107 (708)
.||.+|..++.. .....+...||+|.-. |+....... ....|+.-.-+++|.+.+.+. ...
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 589888877643 2234467778887432 221111000 001122222223565544431 100
Q ss_pred --ceeeecHHHHHHHHHHHHHHHHHhhcCC--------------CcceEEEEecCCCCHHHHHHHHHHHHHc--------
Q 005222 108 --ETHTFCPVQVMGMLFSHLKDVAEKNLEM--------------PVVDCVIGVPSYFTDLQRREYLNAASIA-------- 163 (708)
Q Consensus 108 --~~~~~~~~el~a~~L~~l~~~a~~~~~~--------------~~~~~VitVPa~~~~~qr~~l~~Aa~~A-------- 163 (708)
-.-.||-..++.++|..|..+|--+.+. ....+++|||+.....+|+.++++++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1135777788899998888888655543 2567999999999999999999888765
Q ss_pred CCc---------------------ceeeecchHHHHHhcccc------------------ccCC------CCCCceEEEE
Q 005222 164 GLR---------------------PLRLIHDCTATALGYGIY------------------KTDF------ANGGKSYIAF 198 (708)
Q Consensus 164 Gl~---------------------~~~li~Ep~Aaal~y~~~------------------~~~~------~~~~~~~vlv 198 (708)
|.. +.-=-+|.+|.-+=|... +.+- ...+.-.|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 431 111135555543333221 1111 1223457899
Q ss_pred EEeCCcceEEEEEEEe----CC-eEEEEEE---eCCCCcchHHHHHHHHHH-HHHHHHHhh----------------ccc
Q 005222 199 VDIGHSDTQVSIVSFE----AG-HMKVLSH---AFDSSLGGRDFDDVLFGY-FAAKFKEQY----------------KIN 253 (708)
Q Consensus 199 ~D~Gggt~dvsv~~~~----~~-~~~v~~~---~~~~~lGG~~id~~l~~~-l~~~~~~~~----------------~~~ 253 (708)
+|+||||||+.|-.+. .| ...+.-. .-+-.+.|+||-..+++. ++..+.... +.+
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~d 650 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGD 650 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCc
Confidence 9999999999998876 22 2222211 113458888887776654 344333221 111
Q ss_pred ccCCH-H-------------HHHHHHHHHHHhhhhcCCCCeeeEEeccc---------------------------cCCc
Q 005222 254 VYSNV-R-------------ACIRLRAACEKLKKVLSANAEAPLNIECL---------------------------MDEK 292 (708)
Q Consensus 254 ~~~~~-~-------------~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l---------------------------~~~~ 292 (708)
-.... + ...+++.++|..=..-.. ......+..+ ++=.
T Consensus 651 g~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~-~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdil 729 (1002)
T PF07520_consen 651 GQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPS-AEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDIL 729 (1002)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC-ccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCccee
Confidence 00000 0 013455566553221000 0001111111 1112
Q ss_pred ceEEEeCHHHHHHHhh---hhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCC---------
Q 005222 293 DVRGFIKREEFEELAS---GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPR--------- 360 (708)
Q Consensus 293 d~~~~itr~~fe~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~--------- 360 (708)
++.+.|+..++...+. -.+.+....+-+++...+ -|.++|+|--||+|.||..++.....++.
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 4567899999998775 566666666667776654 46799999999999999999999864432
Q ss_pred -----------CCCCchhhHhchHHHHHHHhC
Q 005222 361 -----------RSLNASECVARGCALQCAMLS 381 (708)
Q Consensus 361 -----------~~~n~~eava~GAa~~a~~~~ 381 (708)
+--||-..||.||.+.+....
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 234899999999987665443
No 54
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.45 E-value=7.3e-06 Score=84.34 Aligned_cols=179 Identities=18% Similarity=0.222 Sum_probs=98.5
Q ss_pred eeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHH
Q 005222 168 LRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFK 247 (708)
Q Consensus 168 ~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~ 247 (708)
-..++|-+|-+.+..... +..-.|+|+||--.- ++.+.+|.+.-..-..-+.-|.-.|=+.+++.
T Consensus 210 D~~~~Ei~ah~kgA~~f~-------p~~dtIiDIGGQD~K--~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~------ 274 (396)
T COG1924 210 DKVVVEISAHAKGARYFA-------PDVDTVIDIGGQDSK--VIKLEDGKVDDFTMNDKCAAGTGRFLEVIARR------ 274 (396)
T ss_pred CcceeeeehhHHHHHHhC-------CCCcEEEEecCccee--EEEEeCCeeeeeEeccccccccchHHHHHHHH------
Confidence 345677777554433221 111289999996555 45555775544433333334433333333332
Q ss_pred HhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEecccc-CCcceEEEeCHHHHHHHhhhhhHHHHHHHHH-HHHHc
Q 005222 248 EQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLM-DEKDVRGFIKREEFEELASGLTEKIAIPCRK-ALADA 325 (708)
Q Consensus 248 ~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~-~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~-~l~~~ 325 (708)
.+.++.+ +-+.+.+.+..-.-+....+..++-. .- ..--. ..|+++..+...+..-+-. +++.-
T Consensus 275 --Lgv~v~E-------~~~~A~~~~~~v~i~S~CaVF~eSevi~~--~~~G~---~~EdI~AGl~~Sv~~~v~~~~~~~~ 340 (396)
T COG1924 275 --LGVDVEE-------LGKLALKATPPVKINSRCAVFAESEVISA--LAEGA---SPEDILAGLAYSVAENVAEKVIKRV 340 (396)
T ss_pred --hCCCHHH-------HHHHHhcCCCCcccCCeeEEEehHHHHHH--HHcCC---CHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2333321 22334444432222233333222100 00 00001 2344555555444443333 44443
Q ss_pred CCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHH
Q 005222 326 GLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (708)
Q Consensus 326 ~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 379 (708)
... +. |+|+||.+....+.+++.+.+|.++.++.+|...-|+|||++|..
T Consensus 341 ~i~--~~--iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 341 DIE--EP--IVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred CCC--CC--EEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 322 22 999999999999999999999999999999999999999999864
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.44 E-value=2.3e-05 Score=82.87 Aligned_cols=46 Identities=28% Similarity=0.274 Sum_probs=43.4
Q ss_pred cEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHH
Q 005222 333 HSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCA 378 (708)
Q Consensus 333 ~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~ 378 (708)
+.|+++||.++.+.+.+.+++.+|.++..+.+|+.+.|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 3599999999999999999999999999999999999999999885
No 56
>PRK10331 L-fuculokinase; Provisional
Probab=98.18 E-value=0.00014 Score=81.44 Aligned_cols=84 Identities=17% Similarity=0.058 Sum_probs=56.6
Q ss_pred EeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHH
Q 005222 297 FIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQ 376 (708)
Q Consensus 297 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~ 376 (708)
.-+|.++-..+-+-+.--...+-+.+++.+ ...++.|.++||+++.|.+.+++.+.||.++.... ..|++++|||+.
T Consensus 357 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~l 433 (470)
T PRK10331 357 NTTRGHFYRAALEGLTAQLKRNLQVLEKIG--HFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMF 433 (470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHH
Confidence 345666554433322222222223344332 22478899999999999999999999999996554 457889999999
Q ss_pred HHHhCCC
Q 005222 377 CAMLSPA 383 (708)
Q Consensus 377 a~~~~~~ 383 (708)
|+.-.+.
T Consensus 434 a~~~~G~ 440 (470)
T PRK10331 434 GWYGVGE 440 (470)
T ss_pred HHHhcCC
Confidence 9876554
No 57
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.08 E-value=0.00086 Score=67.49 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=37.8
Q ss_pred EEEEecCCCChHHHHHHHHhHhC-CC----CCCCCCchhhHhchHHHHH
Q 005222 334 SVEIVGSGSRIPAITRLLTSLFG-RE----PRRSLNASECVARGCALQC 377 (708)
Q Consensus 334 ~ViLvGG~srip~v~~~l~~~fg-~~----v~~~~n~~eava~GAa~~a 377 (708)
.|+|+||.++.+.+.+.|++.++ .+ +..+.+|+.+.|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999984 33 4556789999999999875
No 58
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.00011 Score=82.72 Aligned_cols=81 Identities=21% Similarity=0.131 Sum_probs=53.7
Q ss_pred EeCHHHHHHHhhhhhHHHHHHHHHHHHHc-CCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHH
Q 005222 297 FIKREEFEELASGLTEKIAIPCRKALADA-GLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCAL 375 (708)
Q Consensus 297 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~ 375 (708)
..+|.+|-+.+-+-+.-.....-+.|.+. +. .++.|.++||++|.+.+.+++.+.+|.++..+.. .|+.+.|+|.
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~-~e~~a~g~A~ 444 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADALGLPVVVPEV-EEAGALGGAA 444 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHcCCeeEecCc-ccchHHHHHH
Confidence 34666666555444443444444555554 43 4678999999999999999999999999875543 4555555555
Q ss_pred HHHHhC
Q 005222 376 QCAMLS 381 (708)
Q Consensus 376 ~a~~~~ 381 (708)
.++...
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 555443
No 59
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.96 E-value=0.00097 Score=72.82 Aligned_cols=82 Identities=18% Similarity=0.119 Sum_probs=53.0
Q ss_pred eEEEeCHHHHHHHhhhh---hHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCC-----------
Q 005222 294 VRGFIKREEFEELASGL---TEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREP----------- 359 (708)
Q Consensus 294 ~~~~itr~~fe~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v----------- 359 (708)
+.+.|.-.++++.+-.. +......+-+++.. -+-|.++|+|--+|+|.||..++.....++
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrv 817 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRV 817 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceec
Confidence 34566666666655433 22222233333322 245779999999999999999998875433
Q ss_pred ---------CCCCCchhhHhchHHHHHHHh
Q 005222 360 ---------RRSLNASECVARGCALQCAML 380 (708)
Q Consensus 360 ---------~~~~n~~eava~GAa~~a~~~ 380 (708)
.+..||-..+|.||.+.+..+
T Consensus 818 g~WYPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 818 GTWYPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred cceecccccCcCCCcchHHHHHHHHHHHHh
Confidence 223488999999998776544
No 60
>PRK13317 pantothenate kinase; Provisional
Probab=97.95 E-value=0.0044 Score=63.69 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=42.6
Q ss_pred CccEEEEec-CCCChHHHHHHHHhHh---CCCCCCCCCchhhHhchHHHHHH
Q 005222 331 KIHSVEIVG-SGSRIPAITRLLTSLF---GREPRRSLNASECVARGCALQCA 378 (708)
Q Consensus 331 ~i~~ViLvG-G~srip~v~~~l~~~f---g~~v~~~~n~~eava~GAa~~a~ 378 (708)
.+..|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456899999 7999999999999988 57788889999999999999875
No 61
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=97.88 E-value=0.0047 Score=69.85 Aligned_cols=52 Identities=10% Similarity=0.108 Sum_probs=45.0
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCC
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~ 383 (708)
.++.|.++||+++.+.+.+++.+.||.++....++ |+.++|||+.|+.-.+.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcCc
Confidence 47889999999999999999999999999665544 68899999999876554
No 62
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.79 E-value=0.00013 Score=72.05 Aligned_cols=189 Identities=21% Similarity=0.199 Sum_probs=97.4
Q ss_pred HHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHH
Q 005222 161 SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFG 240 (708)
Q Consensus 161 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 240 (708)
+..|.++...=-|+.+|.+...... ..+....|+|+||||||.+++.-. +.+.-+.-+ -.|+.++..|..
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTP-----Gt~~PlaIlDmG~GSTDAsii~~~-g~v~~iHlA----GAG~mVTmlI~s 175 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTP-----GTDKPLAILDMGGGSTDASIINRD-GEVTAIHLA----GAGNMVTMLINS 175 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTST-----T--SSEEEEEE-SSEEEEEEE-TT-S-EEEEEEE-----SHHHHHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCC-----CCCCCeEEEecCCCcccHHHhCCC-CcEEEEEec----CCchhhHHHHHH
Confidence 4458887777789999988765432 345679999999999999998644 333333222 346777766653
Q ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCee--eEEecc---------c----cC-----CcceEEEe--
Q 005222 241 YFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEA--PLNIEC---------L----MD-----EKDVRGFI-- 298 (708)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~--~i~i~~---------l----~~-----~~d~~~~i-- 298 (708)
.| +++. +.-||.+|+-=-..-+. ++..++ + +. ..+--+.|
T Consensus 176 EL--------Gl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 EL--------GLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp HC--------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred hh--------CCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 32 2211 14456666431110000 111110 0 00 00111222
Q ss_pred --CHHHHHHHhhhhhHH-HHHHHHHHHHHc--CCCCCCccEEEEecCCCChHHHHHHHHhHhC--------CCCCCCCCc
Q 005222 299 --KREEFEELASGLTEK-IAIPCRKALADA--GLHVDKIHSVEIVGSGSRIPAITRLLTSLFG--------REPRRSLNA 365 (708)
Q Consensus 299 --tr~~fe~~~~~~~~~-i~~~i~~~l~~~--~~~~~~i~~ViLvGG~srip~v~~~l~~~fg--------~~v~~~~n~ 365 (708)
+-+++..+-...-++ +....-++|+.- .-+..+|+.|+|||||+.=.-|-+++.+.+. -++.-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 222222221111111 112223344332 2245589999999999998888888888772 244555679
Q ss_pred hhhHhchHHHHH
Q 005222 366 SECVARGCALQC 377 (708)
Q Consensus 366 ~eava~GAa~~a 377 (708)
..|||.|.++.-
T Consensus 318 RNAVATGLvlsy 329 (332)
T PF08841_consen 318 RNAVATGLVLSY 329 (332)
T ss_dssp STHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999998753
No 63
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.66 E-value=0.0011 Score=69.92 Aligned_cols=193 Identities=17% Similarity=0.158 Sum_probs=101.9
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCe
Q 005222 138 VDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGH 217 (708)
Q Consensus 138 ~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~ 217 (708)
..+++|-|+.+...-|+.+.+..-.. |++..+.-.. .|.+ |+.. ..+-+|+|+|.|-+.+.-+- +|
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~-qavl-ya~g--------~ttG~VvD~G~gvt~~vPI~--eG- 165 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAI-QAVL-YASG--------RTTGLVVDSGDGVTHVVPIY--EG- 165 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHH-HHHH-HHcC--------CeeEEEEEcCCCceeeeecc--cc-
Confidence 57999999999999999888764222 3443333222 3323 5432 25679999999977654321 22
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCC------------CeeeEEe
Q 005222 218 MKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSAN------------AEAPLNI 285 (708)
Q Consensus 218 ~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~------------~~~~i~i 285 (708)
+.+...-....+||++++.-|...|.+ .+....... -+.-++.+|+.++.. ....+..
T Consensus 166 ~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~-----~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~ 235 (372)
T KOG0676|consen 166 YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA-----EFEIVRDIKEKLCYVALDFEEEEETANTSSSLES 235 (372)
T ss_pred cccchhhheecccchhhHHHHHHHHHh-----ccccccccc-----HHHHHHHhHhhhcccccccchhhhcccccccccc
Confidence 223333346789999999977776665 121111110 012233444444211 0111111
Q ss_pred c-cccCCcceEEEeCHHHHH---HHhhhh-----hHHHHHHHHHHHHHc--CCCCCCccEEEEecCCCChHHHHHHHHhH
Q 005222 286 E-CLMDEKDVRGFIKREEFE---ELASGL-----TEKIAIPCRKALADA--GLHVDKIHSVEIVGSGSRIPAITRLLTSL 354 (708)
Q Consensus 286 ~-~l~~~~d~~~~itr~~fe---~~~~~~-----~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~srip~v~~~l~~~ 354 (708)
. .+-++ .. +.+.-+.|. -+++|- ..-+.+.+-..+-++ ++.+.-...|+|+||++.+|++.+++.+.
T Consensus 236 ~y~lPDg-~~-i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kE 313 (372)
T KOG0676|consen 236 SYELPDG-QK-ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKE 313 (372)
T ss_pred cccCCCC-CE-EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHH
Confidence 1 01122 22 444433332 222221 122333333333333 33333456899999999999999998877
Q ss_pred hC
Q 005222 355 FG 356 (708)
Q Consensus 355 fg 356 (708)
..
T Consensus 314 l~ 315 (372)
T KOG0676|consen 314 LQ 315 (372)
T ss_pred Hh
Confidence 63
No 64
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.55 E-value=0.00087 Score=72.09 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=55.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCcceee---ecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCC
Q 005222 140 CVIGVPSYFTDLQRREYLNAASIAGLRPLRL---IHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAG 216 (708)
Q Consensus 140 ~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~ 216 (708)
++||==+--..+.|..+..-+..||==++.- --|+.-|+-..|... +.......|+=+|+||||+.+++++-.
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~--~S~~~~~~V~NiDIGGGTtN~avf~~G-- 163 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAA--LSKEHHTVVANIDIGGGTTNIAVFDNG-- 163 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHH--HhhhhCCeEEEEEeCCCceeEEEEECC--
Confidence 5666555556677777777777776322211 123333333222211 122456789999999999999998765
Q ss_pred eEEEEEEeCCCCcchHHH
Q 005222 217 HMKVLSHAFDSSLGGRDF 234 (708)
Q Consensus 217 ~~~v~~~~~~~~lGG~~i 234 (708)
+++++. ..++||+-|
T Consensus 164 --~v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 164 --EVIDTA-CLDIGGRLI 178 (473)
T ss_pred --EEEEEE-EEeeccEEE
Confidence 677776 678999865
No 65
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.41 E-value=0.0024 Score=67.13 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=94.3
Q ss_pred eeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEe-CCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHH
Q 005222 169 RLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFE-AGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFK 247 (708)
Q Consensus 169 ~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~-~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~ 247 (708)
.+++|.+|-|.+..... +..-.|+|+||-.+-+ +.++ +|.+.-..-...+.-|.-.|=+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~-------P~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~L----- 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY-------PGTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIADEM----- 314 (432)
T ss_pred ceeeeHHHHHHHHHHHC-------CCCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHHHc-----
Confidence 35688888776543322 3345889999976664 5554 3544322233233344444434443332
Q ss_pred HhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHHHHHHcCC
Q 005222 248 EQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGL 327 (708)
Q Consensus 248 ~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~ 327 (708)
++++. .|-..+.+.+....-+....+..++-.-. -..--+++++ ++..+...+..-+...+.+.+
T Consensus 315 ---gi~le-------El~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~reD---IaAGL~~SIA~Rv~s~l~r~~- 379 (432)
T TIGR02259 315 ---NMGLH-------ELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKRED---ILAGLHRAIILRAISIISRSG- 379 (432)
T ss_pred ---CCCHH-------HHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCHHH---HHHHHHHHHHHHHHHHHhccc-
Confidence 33321 12222333443333333333333210000 0011123333 233333333333333333321
Q ss_pred CCCCccEEEEecCCCChHHHHHHHHhHhC-----CCCCCCCCchhhHhchHHHHH
Q 005222 328 HVDKIHSVEIVGSGSRIPAITRLLTSLFG-----REPRRSLNASECVARGCALQC 377 (708)
Q Consensus 328 ~~~~i~~ViLvGG~srip~v~~~l~~~fg-----~~v~~~~n~~eava~GAa~~a 377 (708)
. --..|+++||.++.+.+.+.|++.++ .++..+.+|+.+.|+|||++|
T Consensus 380 ~--i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 G--ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred C--CCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 1 12469999999999999999999994 567788999999999999875
No 66
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.39 E-value=0.0013 Score=70.05 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=86.1
Q ss_pred eeecHHHHHHHHHHHHHHHHHhhcCCCcc-----eEEEEecCCCCHHHHHHHHHH-HHHcCCcceeeecchHHHHHhccc
Q 005222 110 HTFCPVQVMGMLFSHLKDVAEKNLEMPVV-----DCVIGVPSYFTDLQRREYLNA-ASIAGLRPLRLIHDCTATALGYGI 183 (708)
Q Consensus 110 ~~~~~~el~a~~L~~l~~~a~~~~~~~~~-----~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~ 183 (708)
...+..++++.+-+-+.-.....++.+.+ .+|+-||-.|.....+.+... ....||....++-|+.||.++.|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 34666666665544443333445555443 489999999998776655544 567899999999999999977665
Q ss_pred cccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHH
Q 005222 184 YKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAA 244 (708)
Q Consensus 184 ~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 244 (708)
. .-.|||+|+-+|.++.++ +|. .+..+.-....||.||++.++-++..
T Consensus 275 s----------s~CVVdiGAQkTsIaCVE--dGv-s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S----------SACVVDIGAQKTSIACVE--DGV-SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c----------ceeEEEccCcceeEEEee--cCc-cccCceEEeccCCchHHHHHHHHHHh
Confidence 2 568999999999998876 332 12222334678999999999876654
No 67
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.86 E-value=0.0011 Score=64.87 Aligned_cols=48 Identities=29% Similarity=0.475 Sum_probs=43.2
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHH
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 379 (708)
.++.|+++||.++.|.+.+++.+.||.++....+ .++.|.|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4899999999999999999999999998866645 89999999999874
No 68
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=96.80 E-value=0.059 Score=52.83 Aligned_cols=222 Identities=15% Similarity=0.136 Sum_probs=125.6
Q ss_pred CcceEEEEecCCCCHHHHHHHHHH-HHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEe
Q 005222 136 PVVDCVIGVPSYFTDLQRREYLNA-ASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFE 214 (708)
Q Consensus 136 ~~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~ 214 (708)
...++.+|-|+--....|+.|.+. .+..||.-+.+--. |+..-|+.. --.-+|+|-|.|-|-+.-+.-.
T Consensus 100 ~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQ--AVLtLYAQG--------L~tGvVvDSGDGVTHi~PVye~ 169 (389)
T KOG0677|consen 100 TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQ--AVLTLYAQG--------LLTGVVVDSGDGVTHIVPVYEG 169 (389)
T ss_pred ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHH--HHHHHHHhc--------ccceEEEecCCCeeEEeeeecc
Confidence 345789999998888888887766 57788886655433 333234321 1345899999999987755311
Q ss_pred CCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCC-----------eeeE
Q 005222 215 AGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANA-----------EAPL 283 (708)
Q Consensus 215 ~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~-----------~~~i 283 (708)
-.+ -.-.....+.|++++.-|.+.+..+ -|...-..+ .+..+..|+.|.... ++++
T Consensus 170 -~~l--~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTv 236 (389)
T KOG0677|consen 170 -FVL--PHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTV 236 (389)
T ss_pred -eeh--hhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhhee
Confidence 111 1112345689999999999988754 122111111 134445555553211 1122
Q ss_pred Eecc--ccCCcceEEEeCHHHHH---HHhhhhh-----HHHHHHHHHHHHHcCCCC--CCccEEEEecCCCChHHHHHHH
Q 005222 284 NIEC--LMDEKDVRGFIKREEFE---ELASGLT-----EKIAIPCRKALADAGLHV--DKIHSVEIVGSGSRIPAITRLL 351 (708)
Q Consensus 284 ~i~~--l~~~~d~~~~itr~~fe---~~~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~srip~v~~~l 351 (708)
-+++ +.+|. .+.+--+.|+ .+++|.+ ..+.+++-.+++.+.+.. .-..+|+|.||++.-|.+-..|
T Consensus 237 Lv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRL 314 (389)
T KOG0677|consen 237 LVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRL 314 (389)
T ss_pred eeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHH
Confidence 2221 22332 3445555564 5566543 234455555666554321 1236999999999999987776
Q ss_pred HhHhC-------------------CCCCCCCCchhhHhchHHHHHHHhCC
Q 005222 352 TSLFG-------------------REPRRSLNASECVARGCALQCAMLSP 382 (708)
Q Consensus 352 ~~~fg-------------------~~v~~~~n~~eava~GAa~~a~~~~~ 382 (708)
++.+. ..+-.+..--.-|=.|.|.+|.+...
T Consensus 315 EkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 315 EKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 65431 01122223345677888888876654
No 69
>PRK15027 xylulokinase; Provisional
Probab=96.57 E-value=0.0074 Score=67.90 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=61.3
Q ss_pred EeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHH
Q 005222 297 FIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQ 376 (708)
Q Consensus 297 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~ 376 (708)
..+|.+|-..+-+-+.-....+-+.+++.+. .++.|+++||+++++.+.+++.+.+|.++....+.+++.++|||++
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 3467766655444333333333344555443 4788999999999999999999999999976667777899999999
Q ss_pred HHHhCCC
Q 005222 377 CAMLSPA 383 (708)
Q Consensus 377 a~~~~~~ 383 (708)
|+.-.+.
T Consensus 432 A~~~~G~ 438 (484)
T PRK15027 432 AQIAANP 438 (484)
T ss_pred HHHhcCC
Confidence 9876554
No 70
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.30 E-value=0.041 Score=60.02 Aligned_cols=182 Identities=14% Similarity=0.100 Sum_probs=102.7
Q ss_pred EEEEEEeCCcceEEEEEEEe-------CCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHH---------HhhcccccCCH
Q 005222 195 YIAFVDIGHSDTQVSIVSFE-------AGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFK---------EQYKINVYSNV 258 (708)
Q Consensus 195 ~vlv~D~Gggt~dvsv~~~~-------~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~---------~~~~~~~~~~~ 258 (708)
.-|++=+|-+|+.+.+-.-. +.....+--+.-..=||..-.-.|++||.+... .+++.++. .
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~ 346 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--E 346 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--H
Confidence 34445567777776654422 111222222223345788888888888876521 11111110 1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCeeeEEeccccCC------cce-------EEEeCHHHHHHHhhhhhHHH---HHHHHHHH
Q 005222 259 RACIRLRAACEKLKKVLSANAEAPLNIECLMDE------KDV-------RGFIKREEFEELASGLTEKI---AIPCRKAL 322 (708)
Q Consensus 259 ~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~------~d~-------~~~itr~~fe~~~~~~~~~i---~~~i~~~l 322 (708)
....++..-+++.+...+-.. ..+.++.+..+ .+. ++.-+.+.+-.+..-.+.-+ .+.|-+++
T Consensus 347 ~~~~~~~~l~~~~~~~~~l~~-~l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~ 425 (544)
T COG1069 347 SLAQRLELLTEAAAAIPPLAS-GLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETF 425 (544)
T ss_pred HHHHHHHHHHhhHhccCcccC-CcEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 233445555556655543221 11223322111 111 22223443333333333333 24455666
Q ss_pred HHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCC
Q 005222 323 ADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (708)
Q Consensus 323 ~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~ 383 (708)
++.|+ .|+.|.++||..+.|.+.+.+.+..|.++..+ ..++++++|+|+.|+.-.+.
T Consensus 426 ~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 426 EDQGI---AIDTLFASGGIRKNPLLMQLYADVTGRPVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred HHcCC---eeeEEEecCCcccCHHHHHHHHHhcCCeEEee-cccchhhhHHHHHHHHHhcc
Confidence 66666 58999999999999999999999999888666 67899999999999876654
No 71
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.28 E-value=0.011 Score=67.26 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=62.4
Q ss_pred EeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHH
Q 005222 297 FIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQ 376 (708)
Q Consensus 297 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~ 376 (708)
.-+|..+..++.-+++-+.-.++..++...-....++.|.++||+++++.+.+++.+.+|.++.+..+ .|+.++|||++
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~l 487 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAAML 487 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHHHH
Confidence 34576666666666666665555554433111124788999999999999999999999999976654 56889999999
Q ss_pred HHHhCCC
Q 005222 377 CAMLSPA 383 (708)
Q Consensus 377 a~~~~~~ 383 (708)
|+.-.+.
T Consensus 488 A~~~~G~ 494 (541)
T TIGR01315 488 GAKAAGT 494 (541)
T ss_pred HHHhcCc
Confidence 9866553
No 72
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.26 E-value=0.035 Score=56.35 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=48.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCcceee---ecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCC
Q 005222 140 CVIGVPSYFTDLQRREYLNAASIAGLRPLRL---IHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAG 216 (708)
Q Consensus 140 ~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~ 216 (708)
++||=-.--....|.++..-...||==++.- --|+.-|.-..+. ..+.......++-+|+||||+..|++...
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA--~t~Seqr~t~v~NlDIGGGTtN~slFD~G-- 165 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGA--QTLSEQRLTRVLNLDIGGGTTNYSLFDAG-- 165 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccc--cchhhhhceEEEEEeccCCccceeeeccc--
Confidence 5555555445555666555545555222111 1122222222221 11222446779999999999999997655
Q ss_pred eEEEEEEeCCCCcchHHH
Q 005222 217 HMKVLSHAFDSSLGGRDF 234 (708)
Q Consensus 217 ~~~v~~~~~~~~lGG~~i 234 (708)
++..+. ...+||+-+
T Consensus 166 --kv~dTa-CLdiGGRLi 180 (473)
T COG4819 166 --KVSDTA-CLDIGGRLI 180 (473)
T ss_pred --ccccce-eeecCcEEE
Confidence 455555 567888754
No 73
>PLN02669 xylulokinase
Probab=96.24 E-value=0.012 Score=67.17 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=53.9
Q ss_pred eCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHH
Q 005222 298 IKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQC 377 (708)
Q Consensus 298 itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a 377 (708)
.+|.++ +..+++-+.-.++..++..+.. ..++.|+++||+|+.|.+.+.+.+.||.++.+...+ ++.|+|||+.|
T Consensus 416 ~~~~~~---~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A 490 (556)
T PLN02669 416 FDPPSE---VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRA 490 (556)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHH
Confidence 345543 3333443333333333333322 357899999999999999999999999988665544 78899999999
Q ss_pred HH
Q 005222 378 AM 379 (708)
Q Consensus 378 ~~ 379 (708)
+.
T Consensus 491 ~~ 492 (556)
T PLN02669 491 AH 492 (556)
T ss_pred HH
Confidence 85
No 74
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.16 E-value=0.8 Score=47.15 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=46.4
Q ss_pred HhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHh-----CCCCCCCCCchhhHhchHHHHH
Q 005222 306 LASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLF-----GREPRRSLNASECVARGCALQC 377 (708)
Q Consensus 306 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f-----g~~v~~~~n~~eava~GAa~~a 377 (708)
++....+.+...+..++.+.+..... |+|+||..+.+.+.+.+.+.+ ..++..+..|....+.|||++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 34444455555555555554433211 999999999977777674444 3456677889999999999986
No 75
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=96.02 E-value=0.21 Score=50.75 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=58.5
Q ss_pred cceEEEEecCCCCHHHHHHHHH-HHHHcCCcceeeecchHHHHHhcc---ccccCCCCCCceEEEEEEeCCcceEEEEEE
Q 005222 137 VVDCVIGVPSYFTDLQRREYLN-AASIAGLRPLRLIHDCTATALGYG---IYKTDFANGGKSYIAFVDIGHSDTQVSIVS 212 (708)
Q Consensus 137 ~~~~VitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~---~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~ 212 (708)
-..+++|=|.+--+.-...+.+ ..+.-++.. +..-+.|+.+++- ....+-........+|+|-|.+-|-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 4568999997765544444433 345556653 3344444444443 211111123456899999999977764332
Q ss_pred EeCCeEEEEEEeCCCCcchHHHHHHHHHHHH
Q 005222 213 FEAGHMKVLSHAFDSSLGGRDFDDVLFGYFA 243 (708)
Q Consensus 213 ~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 243 (708)
.|.....+.. ...+||..++..|.+++.
T Consensus 171 --~g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 --KGIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred --cCcchhhceE-EeecchHHHHHHHHHHhh
Confidence 2222111222 467999999999988774
No 76
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=96.01 E-value=0.022 Score=63.65 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=58.4
Q ss_pred EeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHH
Q 005222 297 FIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQ 376 (708)
Q Consensus 297 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~ 376 (708)
.-+|.+|-..+-+-+.-....+-+.+++.+. ..++.|.++||++++|.+.+++.+.||.++....+ .++.++|||+.
T Consensus 361 ~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~~ 437 (465)
T TIGR02628 361 NTTRGHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAMF 437 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHHH
Confidence 3456665544443333333333344554431 24788999999999999999999999999965554 47889999999
Q ss_pred HHHhCCC
Q 005222 377 CAMLSPA 383 (708)
Q Consensus 377 a~~~~~~ 383 (708)
|+.-.+.
T Consensus 438 a~~a~G~ 444 (465)
T TIGR02628 438 GFYGVGE 444 (465)
T ss_pred HHHhcCc
Confidence 9876553
No 77
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.84 E-value=0.03 Score=63.83 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=59.2
Q ss_pred EeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCC-CChHHHHHHHHhHhCCCCCCCCCchhhHhchHHH
Q 005222 297 FIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSG-SRIPAITRLLTSLFGREPRRSLNASECVARGCAL 375 (708)
Q Consensus 297 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~ 375 (708)
.-+|.+|-+.+-+-+.--...+-+.|++.+. .++.|+++||+ ++.+.+.+++.+.||.+|.+..+ .|+.++|||+
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~-~e~~a~GaA~ 479 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS-DQAPALGAAI 479 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC-CcchhHHHHH
Confidence 3456665555443333333333444455443 47889999999 99999999999999999976655 4688999999
Q ss_pred HHHHhCCC
Q 005222 376 QCAMLSPA 383 (708)
Q Consensus 376 ~a~~~~~~ 383 (708)
.|+.-.+.
T Consensus 480 lA~~~~G~ 487 (536)
T TIGR01234 480 FAAVAAGV 487 (536)
T ss_pred HHHHHcCC
Confidence 99876554
No 78
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.79 E-value=0.022 Score=64.38 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=44.6
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCC
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~ 383 (708)
.++.|.++||++++|.+.+++.+.||.++... +..|+.++|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGVPVERP-VVAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCCeeEec-CcccchHHHHHHHHhhhcCc
Confidence 47889999999999999999999999999654 45578899999999876553
No 79
>PLN02295 glycerol kinase
Probab=95.76 E-value=0.033 Score=63.10 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=44.7
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCC
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~ 383 (708)
.++.|.++||++++|.+.+++.+.||.++... +..|+.|+|||+.|+.-.+.
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~~A~~~~G~ 463 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALGAAYAAGLAVGL 463 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHHHHHHHHhhcCc
Confidence 57889999999999999999999999999544 45678899999999876554
No 80
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.72 E-value=0.02 Score=64.51 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=44.7
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCC
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~ 383 (708)
.++.|.++||+++++.+.+++.+.||.++... +..|+.|+|||+.|+.-.+.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~-~~~e~~alGaA~~a~~~~G~ 450 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGVPVVRP-KVTETTALGAAYAAGLAVGY 450 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCCeeEec-CCCcchHHHHHHHHHhhcCc
Confidence 47889999999999999999999999999654 45678899999999866553
No 81
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.67 E-value=0.029 Score=63.10 Aligned_cols=52 Identities=27% Similarity=0.453 Sum_probs=45.3
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCC
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~ 383 (708)
.++.|.++||+++.+.+.+++.+.||.++... ...++.++|||+.|+.-.+.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~-~~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVP-EGEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeec-CCCcchHHHHHHHHHHhcCC
Confidence 47889999999999999999999999988655 46678899999999876654
No 82
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.60 E-value=0.045 Score=61.05 Aligned_cols=82 Identities=18% Similarity=0.114 Sum_probs=57.6
Q ss_pred eCHHHHHHHhhhhhHHHHHHHHHHHHHc-CCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHH
Q 005222 298 IKREEFEELASGLTEKIAIPCRKALADA-GLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQ 376 (708)
Q Consensus 298 itr~~fe~~~~~~~~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~ 376 (708)
-+|.++-+.+-+-+.-....+-+.|++. +. .++.|.++||+++.+.+.+++.+.+|.++... +.|+.++|||+.
T Consensus 356 ~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~ 430 (454)
T TIGR02627 356 ESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGV 430 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHH
Confidence 4666665544433332333333444442 43 47889999999999999999999999999543 367999999999
Q ss_pred HHHhCCCc
Q 005222 377 CAMLSPAF 384 (708)
Q Consensus 377 a~~~~~~~ 384 (708)
|+.-.+.+
T Consensus 431 a~~~~G~~ 438 (454)
T TIGR02627 431 QLMALDEI 438 (454)
T ss_pred HHHhcCCc
Confidence 98766543
No 83
>PRK04123 ribulokinase; Provisional
Probab=95.53 E-value=0.028 Score=64.28 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=54.8
Q ss_pred CHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCC-CChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHH
Q 005222 299 KREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSG-SRIPAITRLLTSLFGREPRRSLNASECVARGCALQC 377 (708)
Q Consensus 299 tr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a 377 (708)
+|.++-..+-+-+.--...+-+.|++.+. .++.|.++||+ ++.+.+.+++.+.||.+|.+. ...|+.++|||+.|
T Consensus 409 ~~~~l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA 484 (548)
T PRK04123 409 DAPDIYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVV-ASDQCPALGAAIFA 484 (548)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEec-CccccchHHHHHHH
Confidence 55655433332222222233334444443 47889999999 999999999999999988555 45678899999999
Q ss_pred HHhCC
Q 005222 378 AMLSP 382 (708)
Q Consensus 378 ~~~~~ 382 (708)
+.-.+
T Consensus 485 ~~~~G 489 (548)
T PRK04123 485 AVAAG 489 (548)
T ss_pred HHHhc
Confidence 87554
No 84
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.52 E-value=0.033 Score=63.02 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=44.6
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCC
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~ 383 (708)
.++.|.++||+++++.+.+++.+.||.++.... ..|+.++|||+.|+.-.+.
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcCc
Confidence 378899999999999999999999999986554 5568899999999876554
No 85
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.44 E-value=0.058 Score=60.38 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=56.2
Q ss_pred CHHHHHHHhhhhhHHHHHHHHHHHHHc-CCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHH
Q 005222 299 KREEFEELASGLTEKIAIPCRKALADA-GLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQC 377 (708)
Q Consensus 299 tr~~fe~~~~~~~~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a 377 (708)
+|.+|-+.+-+-+.--...+-+.|++. +. .++.|.++||+++.+.+.+++.+.+|.+|.... .++.++|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 555555444433332233333344442 32 478899999999999999999999999995543 379999999999
Q ss_pred HHhCCCc
Q 005222 378 AMLSPAF 384 (708)
Q Consensus 378 ~~~~~~~ 384 (708)
+.-.+.+
T Consensus 420 ~~a~G~~ 426 (471)
T PRK10640 420 LMTLDEL 426 (471)
T ss_pred HHHcCCc
Confidence 8766543
No 86
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.44 E-value=0.034 Score=49.55 Aligned_cols=48 Identities=29% Similarity=0.367 Sum_probs=27.8
Q ss_pred EEEEEeCCcceEEEEEEEe-CCeEEEEEEeCCCCcc--hHHHH--HHHHHHHH
Q 005222 196 IAFVDIGHSDTQVSIVSFE-AGHMKVLSHAFDSSLG--GRDFD--DVLFGYFA 243 (708)
Q Consensus 196 vlv~D~Gggt~dvsv~~~~-~~~~~v~~~~~~~~lG--G~~id--~~l~~~l~ 243 (708)
++++|+|++++.+.+++.. .+.++++..+....-| |..+. +.+.+-+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999999863 3345555333222211 77777 66655543
No 87
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.26 E-value=0.061 Score=61.12 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=55.9
Q ss_pred CHHHHHHHhhhhhHHHHHHHHHHHHH-cCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHH
Q 005222 299 KREEFEELASGLTEKIAIPCRKALAD-AGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQC 377 (708)
Q Consensus 299 tr~~fe~~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a 377 (708)
+|.++-..+-+-+.-....+-+.+++ .+. .++.|.++||+++++.+.+++.+.+|.++....+ .++.++|||+.|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA 454 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVV-KEATALGCAIAA 454 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecc-cCchHHHHHHHH
Confidence 55555444333222222233344444 243 4788999999999999999999999999976654 467899999999
Q ss_pred HHhCCC
Q 005222 378 AMLSPA 383 (708)
Q Consensus 378 ~~~~~~ 383 (708)
+.-.+.
T Consensus 455 ~~~~G~ 460 (520)
T PRK10939 455 GVGAGI 460 (520)
T ss_pred HHHhCC
Confidence 866553
No 88
>PRK10854 exopolyphosphatase; Provisional
Probab=95.25 E-value=0.42 Score=54.06 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCcceeeecchHHHHHhc-cccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcch
Q 005222 153 RREYLNAASIAGLRPLRLIHDCTATALGY-GIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGG 231 (708)
Q Consensus 153 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG 231 (708)
...+.++-+..|+++ .+|+...=|.+.| |... .++ .....+|+|+|||+|.++++. ++.+....+ .++|.
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~-~l~--~~~~~lvvDIGGGStEl~~~~--~~~~~~~~S---~~lG~ 169 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEH-TQP--EKGRKLVIDIGGGSTELVIGE--NFEPILVES---RRMGC 169 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhc-ccC--CCCCeEEEEeCCCeEEEEEec--CCCeeEeEE---Eecce
Confidence 344555556679986 5666555555544 4433 222 235689999999999999975 333222211 26777
Q ss_pred HHHHHHH
Q 005222 232 RDFDDVL 238 (708)
Q Consensus 232 ~~id~~l 238 (708)
-.+.+.+
T Consensus 170 vrl~e~f 176 (513)
T PRK10854 170 VSFAQLY 176 (513)
T ss_pred eeHHhhh
Confidence 6665543
No 89
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.11 E-value=0.44 Score=53.57 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCcceeeecchHHHHHhc-cccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcch
Q 005222 153 RREYLNAASIAGLRPLRLIHDCTATALGY-GIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGG 231 (708)
Q Consensus 153 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG 231 (708)
...+.++-+..|+++ .+|+...=|-+.| |.... ++. ....+|+|+|||+|.++++. ++.+ ... ...++|.
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~-l~~--~~~~lviDIGGGStEl~~~~--~~~~--~~~-~Sl~lG~ 164 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHT-TGG--ADQRLVVDIGGASTELVTGT--GAQA--TSL-FSLSMGC 164 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhc-cCC--CCCEEEEEecCCeeeEEEec--CCce--eee-eEEeccc
Confidence 445556666779986 5565555554444 44432 332 34589999999999999875 3333 211 2467888
Q ss_pred HHHHHHH
Q 005222 232 RDFDDVL 238 (708)
Q Consensus 232 ~~id~~l 238 (708)
-.+.+.+
T Consensus 165 vrl~e~f 171 (496)
T PRK11031 165 VTWLERY 171 (496)
T ss_pred hHHHHHh
Confidence 7766554
No 90
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.07 E-value=0.068 Score=58.70 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=48.8
Q ss_pred CCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCC
Q 005222 330 DKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (708)
Q Consensus 330 ~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~ 383 (708)
..|+.+.+.||.|+.|.+.+.+.+.+|.++..+.+++. ++.|||+.|+..++.
T Consensus 413 ~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 413 HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 46888999999999999999999999999999988887 999999999988875
No 91
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.057 Score=57.31 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=47.3
Q ss_pred cCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHH
Q 005222 325 AGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (708)
Q Consensus 325 ~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 379 (708)
-|........|++|||+||...|-+.|.+.||.++... +..+++++|+|+.|+.
T Consensus 436 lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 436 LGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 35666677899999999999999999999999998655 8888999999999874
No 92
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=95.03 E-value=0.05 Score=56.56 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCC-CCCCCCCchhhHhchHHH
Q 005222 308 SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGR-EPRRSLNASECVARGCAL 375 (708)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~-~v~~~~n~~eava~GAa~ 375 (708)
+-..+++.+.|++.....+..+.+. .++.+||.+ |.+...|.+.+|. .+..+..+.-+.|+||++
T Consensus 218 ~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 218 RIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 3344455555555544446554332 355566665 7888888888885 455565678899999975
No 93
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=94.87 E-value=0.93 Score=49.20 Aligned_cols=84 Identities=13% Similarity=0.164 Sum_probs=49.1
Q ss_pred cceEEEeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHH-hHhCC-CCCCCCCchhhH
Q 005222 292 KDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLT-SLFGR-EPRRSLNASECV 369 (708)
Q Consensus 292 ~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~-~~fg~-~v~~~~n~~eav 369 (708)
..-.+.||..++.++.. --.-+..-++-.|+++|++.++|+.|+|.||+++-=-+++.+. ..++. +..+..-.-.++
T Consensus 289 ~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~a 367 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAA 367 (412)
T ss_dssp SSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HH
T ss_pred CCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHH
Confidence 34467899999977532 2334556677888999999999999999999998777777765 22221 111222223455
Q ss_pred hchHHHH
Q 005222 370 ARGCALQ 376 (708)
Q Consensus 370 a~GAa~~ 376 (708)
-.||.+.
T Consensus 368 l~GA~~~ 374 (412)
T PF14574_consen 368 LAGARMA 374 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6676543
No 94
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=94.74 E-value=1.2 Score=45.62 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=38.7
Q ss_pred CccEEEEecC-CCChHHHHHHHHhHhC---CCCCCCCCchhhHhchHHH
Q 005222 331 KIHSVEIVGS-GSRIPAITRLLTSLFG---REPRRSLNASECVARGCAL 375 (708)
Q Consensus 331 ~i~~ViLvGG-~srip~v~~~l~~~fg---~~v~~~~n~~eava~GAa~ 375 (708)
.+..|+++|| .+..|.+++.+...+. .+...+.|+...+|+||++
T Consensus 230 ~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 230 NIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred CCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 5788999999 6779999999998874 5667788999999999985
No 95
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.58 E-value=0.42 Score=51.97 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHH-HHcCCcceeeecchHHHHHhccccccCCCCCCce
Q 005222 116 QVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAA-SIAGLRPLRLIHDCTATALGYGIYKTDFANGGKS 194 (708)
Q Consensus 116 el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 194 (708)
++...+|.|+.....-.-..-...+++|=+..-...+|+.|.+-. +..|++.+.+=-+.. ++|.+.. +.....
T Consensus 95 el~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl---fS~~hN~---~~~~~~ 168 (645)
T KOG0681|consen 95 ELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL---FSFYHNY---GKSSNK 168 (645)
T ss_pred HHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH---HHHhhcc---CcccCc
Confidence 355555555554321110011345888888877777888887764 566887655422211 1111111 112334
Q ss_pred EEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHH
Q 005222 195 YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAK 245 (708)
Q Consensus 195 ~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 245 (708)
..||+++|..+|.|-.+- +|.. ++....-.++||.....-|.+.+..+
T Consensus 169 ~~liis~g~~~T~vipvl--dG~~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 169 SGLIISMGHSATHVIPVL--DGRL-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred ceEEEecCCCcceeEEEe--cCch-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 789999999999876653 4443 33444468899999877776666544
No 96
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.49 E-value=0.17 Score=49.84 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEe
Q 005222 122 FSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDI 201 (708)
Q Consensus 122 L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~ 201 (708)
..+|++..+..++.++ .++++-..|... +++++--+. ||| +|.....-+....++.++++|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~v-------------AAa-NW~Ata~~~~e~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREV-------------AAA-NWVATARFLAEEIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHH-------------HHh-hhHHHHHHHHHhcCCceEEEec
Confidence 4556666777777665 888998888775 222211111 111 1111100001134577999999
Q ss_pred CCcceEEEEEE
Q 005222 202 GHSDTQVSIVS 212 (708)
Q Consensus 202 Gggt~dvsv~~ 212 (708)
|+.|+|+--+.
T Consensus 138 GSTTtDIIPi~ 148 (330)
T COG1548 138 GSTTTDIIPIK 148 (330)
T ss_pred CCcccceEeec
Confidence 99999986654
No 97
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.01 E-value=0.82 Score=50.87 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEE
Q 005222 153 RREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVS 212 (708)
Q Consensus 153 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~ 212 (708)
-+.+..+-+..|+++-.+=-|-+|--..+|+-.. ++ .....+|+|+|||+|.+++..
T Consensus 91 ~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~-~~--~~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 91 DEFLARVEKELGLPIEVISGEEEARLIYLGVAST-LP--RKGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred HHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhc-CC--CCCCEEEEEecCCeEEEEEec
Confidence 4567777788899864444455554444444332 22 267899999999999999886
No 98
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=91.86 E-value=0.51 Score=49.05 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=43.0
Q ss_pred HHHHHHHcCCcceeeecchHHHHHhc-cccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHH
Q 005222 156 YLNAASIAGLRPLRLIHDCTATALGY-GIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDF 234 (708)
Q Consensus 156 l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~i 234 (708)
+.+.-+..|+++ .+|+...=|.+.| +... .+ ......+++|+|||+|.+++++ ++.+ .... ..++|.-.+
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~-~l--~~~~~~lviDIGGGStEl~~~~--~~~~--~~~~-Sl~lG~vrl 147 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLS-SL--PPDKNGLVIDIGGGSTELILFE--NGKV--VFSQ-SLPLGAVRL 147 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHH-HS--TTTSSEEEEEEESSEEEEEEEE--TTEE--EEEE-EES--HHHH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHh-hc--cccCCEEEEEECCCceEEEEEE--CCee--eEee-eeehHHHHH
Confidence 444445579886 5555555444444 3322 22 2356789999999999998875 4433 2222 468998887
Q ss_pred HHHH
Q 005222 235 DDVL 238 (708)
Q Consensus 235 d~~l 238 (708)
.+.+
T Consensus 148 ~e~~ 151 (285)
T PF02541_consen 148 TERF 151 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 99
>PRK09604 UGMP family protein; Validated
Probab=90.96 E-value=20 Score=38.11 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=37.1
Q ss_pred CccEEEEecCCCChHHHHHHHHhHh---CCCCCCCC---CchhhHhchHHHHHH
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLF---GREPRRSL---NASECVARGCALQCA 378 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~GAa~~a~ 378 (708)
+++.|+|.||.+....+++.|.+.+ |.++..+. -.|.+++.|+|=+-.
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~ 307 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYER 307 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHH
Confidence 4678999999999999999999988 54444433 348899999974433
No 100
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.82 E-value=3.6 Score=43.11 Aligned_cols=52 Identities=23% Similarity=0.315 Sum_probs=38.3
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhCC----CCCCCCCc----hhhHhchHHHHHHHhCCC
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFGR----EPRRSLNA----SECVARGCALQCAMLSPA 383 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~----~v~~~~n~----~eava~GAa~~a~~~~~~ 383 (708)
+.+.|+|.|-.+++|-+.+.+.+.|+. ++. .+.+ ...+|.|||+.|.-+.+.
T Consensus 260 ~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 260 DPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhhcc
Confidence 678899999999999998888888742 221 2222 244799999999877654
No 101
>PTZ00288 glucokinase 1; Provisional
Probab=90.79 E-value=4.7 Score=43.87 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.9
Q ss_pred eEEEEEccccceEEEEEeC
Q 005222 2 SVVGFDIGNENCVIATVKH 20 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~ 20 (708)
.++|+|+|.|++++++++.
T Consensus 27 ~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 27 IFVGCDVGGTNARVGFARE 45 (405)
T ss_pred eEEEEEecCCceEEEEEec
Confidence 5899999999999999764
No 102
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=90.63 E-value=1.8 Score=41.72 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCcceeeecchHHHHHh
Q 005222 151 LQRREYLNAASIAGLRPLRLIHDCTATALG 180 (708)
Q Consensus 151 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~ 180 (708)
...+.+.++++.|||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457788999999999999999999998743
No 103
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=90.45 E-value=1.6 Score=46.51 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCC----CCCchhhHhchHHHHHHH
Q 005222 310 LTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRR----SLNASECVARGCALQCAM 379 (708)
Q Consensus 310 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~----~~n~~eava~GAa~~a~~ 379 (708)
+.+-+...|.+.+.... ...+.|+++||+++.|++.++|++.++.++.. .++++.-=|..-|++|..
T Consensus 268 lt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 268 LTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 33333444555554432 23468999999999999999999999633321 134443334445666654
No 104
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=90.08 E-value=0.27 Score=53.39 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCCCC--CccEEEEecCCCChHHHHHHHHhHh-C-------CCCCCCCCchhhHhchHHHHHHH
Q 005222 314 IAIPCRKALADAGLHVD--KIHSVEIVGSGSRIPAITRLLTSLF-G-------REPRRSLNASECVARGCALQCAM 379 (708)
Q Consensus 314 i~~~i~~~l~~~~~~~~--~i~~ViLvGG~srip~v~~~l~~~f-g-------~~v~~~~n~~eava~GAa~~a~~ 379 (708)
+.+++...|.+.-.... -+..|+|+||+|.+|++.+.|...+ + ..|....||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 44555666665422222 2789999999999999999998776 2 23456778999999999999986
No 105
>PLN02666 5-oxoprolinase
Probab=90.01 E-value=2.3 Score=52.78 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=48.2
Q ss_pred eCHHHHHHHhhhh-hHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCC-CCCCCCchhhHhchHHH
Q 005222 298 IKREEFEELASGL-TEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGRE-PRRSLNASECVARGCAL 375 (708)
Q Consensus 298 itr~~fe~~~~~~-~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~-v~~~~n~~eava~GAa~ 375 (708)
++-++...-+..+ -..+.+.|+......|+++.+. .++..||+ =|...-.|.+.+|.+ +..+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 3444443333333 2344455666666667766543 34455555 477888899999966 77888999999999975
No 106
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=89.74 E-value=15 Score=38.61 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHhh--cCCCcceEEEEecCCCCHHH------------HHHHHHHH-HHcCCcceeeecchHHHH
Q 005222 114 PVQVMGMLFSHLKDVAEKN--LEMPVVDCVIGVPSYFTDLQ------------RREYLNAA-SIAGLRPLRLIHDCTATA 178 (708)
Q Consensus 114 ~~el~a~~L~~l~~~a~~~--~~~~~~~~VitVPa~~~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~Aaa 178 (708)
+++++..+...+.+..+.. ...++..+.|++|...+... .-.+.+.. +..|++ +.+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHH
Confidence 3444444444444433221 12345667788886554211 11233333 234765 67999999999
Q ss_pred HhccccccCCCCCCceEEEEEEeCCcceEEEEE
Q 005222 179 LGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (708)
Q Consensus 179 l~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~ 211 (708)
++-...... ....+++++.+|.|- -.+++
T Consensus 112 laE~~~g~~---~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAG---KGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhccc---CCCCcEEEEEeCCcc-EEEEE
Confidence 865443221 234678888999775 55554
No 107
>PRK14878 UGMP family protein; Provisional
Probab=88.02 E-value=26 Score=37.08 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=30.1
Q ss_pred CccEEEEecCCCChHHHHHHHHhHh---CCCCCCCC---CchhhHhc
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLF---GREPRRSL---NASECVAR 371 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~ 371 (708)
.+..|+|+||-+...++++.+.+.+ |.++..+. -.|.+++.
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 3667999999999999999999987 54444333 23555555
No 108
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=87.86 E-value=15 Score=38.65 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=34.5
Q ss_pred CccEEEEecCCCChHHHHHHHHhHh---CCCCCCCC---CchhhHhchHH
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLF---GREPRRSL---NASECVARGCA 374 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~GAa 374 (708)
.++.|+|.||.+....+.+.|.+.+ +.++..+. --|.+++.|+|
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 4678999999999999999999988 54443333 34888888886
No 109
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=87.46 E-value=2.3 Score=44.50 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEE
Q 005222 118 MGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIA 197 (708)
Q Consensus 118 ~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vl 197 (708)
+...|+..++.+..+ +.....+|-|--..--......+...-...|+++ .+|+...=|.+.|.--...++. ...+
T Consensus 54 ~~~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~---~~~~ 128 (300)
T TIGR03706 54 ALEALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPI---ADGL 128 (300)
T ss_pred HHHHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCC---CCcE
Confidence 334555555555433 3222223322222221222333334445579875 6777777776666322222221 2249
Q ss_pred EEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHH
Q 005222 198 FVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVL 238 (708)
Q Consensus 198 v~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 238 (708)
++|+|||+|.++++. ++.+ ... ...++|...+.+.+
T Consensus 129 v~DiGGGSte~~~~~--~~~~--~~~-~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 129 VVDIGGGSTELILGK--DFEP--GEG-VSLPLGCVRLTEQF 164 (300)
T ss_pred EEEecCCeEEEEEec--CCCE--eEE-EEEccceEEhHHhh
Confidence 999999999999875 3322 111 23567766665553
No 110
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=86.42 E-value=61 Score=36.28 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=55.0
Q ss_pred eCHHHHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHH-HHHHhHhCCCCCCCCCc-hhhHhchHHH
Q 005222 298 IKREEFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAIT-RLLTSLFGREPRRSLNA-SECVARGCAL 375 (708)
Q Consensus 298 itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~-~~l~~~fg~~v~~~~n~-~eava~GAa~ 375 (708)
....++-..++..++++...+-..+.+.. ..+.+.+.||.+..-..- +++.+-+..++...+.+ |.-.|.|||+
T Consensus 256 ~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl 331 (555)
T COG2192 256 ERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAAL 331 (555)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHH
Confidence 33445666667777776666555555432 156799999988777666 67777777677665544 7789999999
Q ss_pred HHHHhC
Q 005222 376 QCAMLS 381 (708)
Q Consensus 376 ~a~~~~ 381 (708)
++....
T Consensus 332 ~~~~~~ 337 (555)
T COG2192 332 AVKREL 337 (555)
T ss_pred HHHHHh
Confidence 987653
No 111
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=86.28 E-value=2.1 Score=46.48 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=57.5
Q ss_pred CHHHHHHHh-hhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHHHHH
Q 005222 299 KREEFEELA-SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCALQC 377 (708)
Q Consensus 299 tr~~fe~~~-~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a 377 (708)
++++|-+.. +.+.-+....++.+=++++. .+..+-+=||.++..++.+.+.+.+|.+|.++.+ .|..|+|||+.|
T Consensus 372 ~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~lA 447 (499)
T COG0554 372 TKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYLA 447 (499)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHHH
Confidence 444444332 22333344444444344444 5788899999999999999999999999977755 577899999999
Q ss_pred HHhCCCc
Q 005222 378 AMLSPAF 384 (708)
Q Consensus 378 ~~~~~~~ 384 (708)
..-.+..
T Consensus 448 Gla~G~w 454 (499)
T COG0554 448 GLAVGFW 454 (499)
T ss_pred hhhhCcC
Confidence 8776643
No 112
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.34 E-value=43 Score=33.60 Aligned_cols=90 Identities=18% Similarity=0.247 Sum_probs=59.0
Q ss_pred ecCCCCHHHHHHHHHHHHH---cCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCeEEE
Q 005222 144 VPSYFTDLQRREYLNAASI---AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGHMKV 220 (708)
Q Consensus 144 VPa~~~~~qr~~l~~Aa~~---AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~v 220 (708)
+|.+|+. |+.|+.. ++-. ..+++.-.||+....++- .....||+|+|-|++..+++. .+++.-
T Consensus 186 iPe~FtR-----Mraaa~sal~~~t~-av~mDskfaav~gal~dp------aa~palvVd~GngHttaalvd--edRI~g 251 (342)
T COG4012 186 IPESFTR-----MRAAAMSALSAGTD-AVAMDSKFAAVMGALVDP------AADPALVVDYGNGHTTAALVD--EDRIVG 251 (342)
T ss_pred CchhHHH-----HHHHHHHHHhcCce-EEEEcchhHhhhhcccCc------ccCceEEEEccCCceEEEEec--CCeEEE
Confidence 5666653 3443333 3333 456677777776665542 234899999999999998875 456665
Q ss_pred EEEeCCCCcchHHHHHHHHHHHHHHHH
Q 005222 221 LSHAFDSSLGGRDFDDVLFGYFAAKFK 247 (708)
Q Consensus 221 ~~~~~~~~lGG~~id~~l~~~l~~~~~ 247 (708)
+.......+.-..|-..|.+++..++.
T Consensus 252 v~EHHT~~Lspekled~I~rf~~GeL~ 278 (342)
T COG4012 252 VYEHHTIRLSPEKLEDQIIRFVEGELE 278 (342)
T ss_pred EeecccccCCHHHHHHHHHHHHhcccc
Confidence 555556778888777777777665543
No 113
>PTZ00297 pantothenate kinase; Provisional
Probab=85.10 E-value=41 Score=43.06 Aligned_cols=299 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred EEEEccccceEEEEEeCCceEEEeCCCCCccceEEEEEcCCcEEEcHHHHHhHhcCCcchHHHHHHhhCCCCCChHHHhh
Q 005222 4 VGFDIGNENCVIATVKHRGVDVLLNEESNRETPSIVCFGEKQRFIGAAGYASAMMHPKSTVSQVKRLIGRRYGDPVVQKD 83 (708)
Q Consensus 4 vGID~GTt~s~va~~~~~~~~ii~~~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~v~~~ 83 (708)
++||+|.|+++++++.+.+-..++.. +-.+|..+..+....++..+. +.+.....
T Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 1096 (1452)
T PTZ00297 1042 VTIDIGGTFAKIAYVQPPGGFAFPTY------------------IVHEASSLSEKLGLRTFHFFA-------DAEAAESE 1096 (1452)
T ss_pred eEEecCceeEEEEEEeCCCCCCCcch------------------hhhhhhhhhhccCcccccccc-------ChHHhhhh
Q ss_pred hccCCceeeecCCCCeEEEEEecCceeeecHHHHHHHHHHHHHHHHHhhcC--CCcceEEEEecCCCCHHHHHHHHHHHH
Q 005222 84 LMVLPFESCESPDGGISIKLKYLGETHTFCPVQVMGMLFSHLKDVAEKNLE--MPVVDCVIGVPSYFTDLQRREYLNAAS 161 (708)
Q Consensus 84 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~a~~L~~l~~~a~~~~~--~~~~~~VitVPa~~~~~qr~~l~~Aa~ 161 (708)
+...|+.. .|++.| ..+.-..+ ..+++.|++.....-. .....+.+| .-..-......-+
T Consensus 1097 ~~~~~~~~----~g~l~f--------~~f~t~~i-~~~~~~l~~~~~~~~~~~~~~~~i~~T-----GGGA~k~~~~~~~ 1158 (1452)
T PTZ00297 1097 LRTRPHSR----VGTLRF--------AKIPSKQI-PDFADYLAGSHAINYYKPQYRTKVRAT-----GGGAFKYASVAKK 1158 (1452)
T ss_pred hccCCCCC----ceEEEE--------EEecccCH-HHHHHHHHhhhhhcccCcCCceEEEEe-----CCcHHHHHHHHHH
Q ss_pred HcCCcceeeecchHHH--HHhccccc-----------------cCCCCCCce-----EEEEEEeCCcceEEEEEEEeCCe
Q 005222 162 IAGLRPLRLIHDCTAT--ALGYGIYK-----------------TDFANGGKS-----YIAFVDIGHSDTQVSIVSFEAGH 217 (708)
Q Consensus 162 ~AGl~~~~li~Ep~Aa--al~y~~~~-----------------~~~~~~~~~-----~vlv~D~Gggt~dvsv~~~~~~~ 217 (708)
..|++ +...+|-.|. .+.|.+.. ..+...... .+|++++|.|+.=+-|-.-++..
T Consensus 1159 ~~~~~-~~~~dEm~~li~G~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~yp~llvNIGSGvSi~kv~~~~~~~ 1237 (1452)
T PTZ00297 1159 VLGIN-FSVMREMDAVVKGLNLVIRVAPESIFTVDPSTGVHHPHQLVSPPGDGFSPFPCLLVNIGSGISIIKCLGPDGSH 1237 (1452)
T ss_pred HhCCC-cceecHHHHHHHHHHHHHhcCCceEEEeccccccccccccccCccccCCCCceEEEEccCceEEEEEecCCCcE
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhc--------CCCCeeeEEecccc
Q 005222 218 MKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVL--------SANAEAPLNIECLM 289 (708)
Q Consensus 218 ~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~L--------s~~~~~~i~i~~l~ 289 (708)
-+|-+++ +||-.| +|+ .+|+-.|....+.| ..+...++-|.++|
T Consensus 1238 ~RvgGt~----iGGGT~---------------~GL---------~~llt~~~~f~e~l~~~~la~~Gd~~~vDllVgDIy 1289 (1452)
T PTZ00297 1238 VRVGGSP----IGGATF---------------WGL---------VRTMTNVTSWEEVMEIMRLDGPGDNKNVDLLVGDIY 1289 (1452)
T ss_pred EEecCcc----cccHhH---------------HHH---------HHHhcCCCCHHHHHHHHHHhhCCCccccceEEeecc
Q ss_pred CCcceE--------------EEeCHHHH-----------------------------------------------HHHhh
Q 005222 290 DEKDVR--------------GFIKREEF-----------------------------------------------EELAS 308 (708)
Q Consensus 290 ~~~d~~--------------~~itr~~f-----------------------------------------------e~~~~ 308 (708)
...... -++.++++ ++++.
T Consensus 1290 g~~~~~~~~~L~~~~iASsfGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~ 1369 (1452)
T PTZ00297 1290 GYNAKDLPAMLSVDTVASTFGKLGTERFYEMMRGVSTAHFSDDDAAGEILSPKALKSPTVISELPVRNGTKKASAIDIVR 1369 (1452)
T ss_pred CCCcccccCCCCcceeeeccCcccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCccEEEEecC-CCChHHHHHHHHhHh-----C-CCCCCCCCchhhHhchHHH
Q 005222 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGS-GSRIPAITRLLTSLF-----G-REPRRSLNASECVARGCAL 375 (708)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG-~srip~v~~~l~~~f-----g-~~v~~~~n~~eava~GAa~ 375 (708)
.++.-|...|-+.---..... +++.|+++|+ -...|..++.|..++ | ......-+....-|+||++
T Consensus 1370 sll~~is~nIgqia~l~a~~~-~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~ 1442 (1452)
T PTZ00297 1370 SLLNMISSNVTQLAYLHSRVQ-GVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCAT 1442 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhh
No 114
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=85.01 E-value=0.81 Score=38.84 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=18.2
Q ss_pred CeEEEEEccccceEEEEEeCC
Q 005222 1 MSVVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~~~ 21 (708)
|.++|||+|.|++++|++...
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred CcEEEEccCCCeEEEEEECCC
Confidence 789999999999999987543
No 115
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=82.60 E-value=1.4 Score=40.12 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=18.9
Q ss_pred CeEEEEEccccceEEEEEeCCc
Q 005222 1 MSVVGFDIGNENCVIATVKHRG 22 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~~~~ 22 (708)
|.++|||+|+..+.+|+.++..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 8999999999999999987653
No 116
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=81.81 E-value=14 Score=37.18 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=59.4
Q ss_pred CCCcceEEE--EecCCCCHHHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEE
Q 005222 134 EMPVVDCVI--GVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (708)
Q Consensus 134 ~~~~~~~Vi--tVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~ 211 (708)
+..+..++. .+|.+|+. -+++++++...|.+. .+++-..||.+....+.. ......++++|+|-|+|-+.++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~---v~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPE---VSSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChh---hhccCCeEEEEeCCccEEEEEE
Confidence 455677888 89998764 356666666666665 444555454444433221 1345789999999999998887
Q ss_pred EEeCCeEEEEEEeCCCCcchHHHHHHHH
Q 005222 212 SFEAGHMKVLSHAFDSSLGGRDFDDVLF 239 (708)
Q Consensus 212 ~~~~~~~~v~~~~~~~~lGG~~id~~l~ 239 (708)
.++++.=+...-...+-...+...|.
T Consensus 185 --~~~rI~GvfEHHT~~l~~~kL~~~l~ 210 (254)
T PF08735_consen 185 --KDGRIYGVFEHHTGMLTPEKLEEYLE 210 (254)
T ss_pred --eCCEEEEEEecccCCCCHHHHHHHHH
Confidence 35544444344344555555544443
No 117
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=14 Score=39.06 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=41.8
Q ss_pred CCCCCccEEEEecCCCChHHHHHHHHhHh-CCCCC----CCCCchhhHhchHHHHHHHh
Q 005222 327 LHVDKIHSVEIVGSGSRIPAITRLLTSLF-GREPR----RSLNASECVARGCALQCAML 380 (708)
Q Consensus 327 ~~~~~i~~ViLvGG~srip~v~~~l~~~f-g~~v~----~~~n~~eava~GAa~~a~~~ 380 (708)
.-....+.++++||+.+.|.+.+.|...+ |..|. ..+++|..=|.+-|++|...
T Consensus 286 ~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 286 TLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred hccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 34456789999999999999999999999 54553 24567777777778887754
No 118
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=81.45 E-value=3.1 Score=44.46 Aligned_cols=71 Identities=23% Similarity=0.178 Sum_probs=43.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCC-CC------CCCCCchhhHhchHHHH
Q 005222 304 EELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGR-EP------RRSLNASECVARGCALQ 376 (708)
Q Consensus 304 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~-~v------~~~~n~~eava~GAa~~ 376 (708)
++++..+.+-+...|.+.++.... +++.|+++||+++.|++.+.|++.++. ++ ..+.+.-||++. |++
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~L 334 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWL 334 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHH
Confidence 334444444455555666665432 378999999999999999999999963 44 233455566554 556
Q ss_pred HHH
Q 005222 377 CAM 379 (708)
Q Consensus 377 a~~ 379 (708)
|..
T Consensus 335 a~~ 337 (364)
T PF03702_consen 335 AYR 337 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 119
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=81.12 E-value=9.3 Score=39.23 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=54.1
Q ss_pred EeCHHHHHHHhhh---hhHHHHHHHHHHHHH-cCCCC--CCccEEEEecC--CCChH-HHHHHHHhHhCCCCCCCCCchh
Q 005222 297 FIKREEFEELASG---LTEKIAIPCRKALAD-AGLHV--DKIHSVEIVGS--GSRIP-AITRLLTSLFGREPRRSLNASE 367 (708)
Q Consensus 297 ~itr~~fe~~~~~---~~~~i~~~i~~~l~~-~~~~~--~~i~~ViLvGG--~srip-~v~~~l~~~fg~~v~~~~n~~e 367 (708)
..+++||.+.+.. ....+..++..+... +.+-. .....|+|.|- ++|.| .+++.|+++|..++..- .. +
T Consensus 222 ~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L-~~-k 299 (326)
T TIGR03281 222 ENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVL-DS-E 299 (326)
T ss_pred cCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEEe-cc-h
Confidence 4678888776633 222222222222221 12111 13348999987 99999 99999999998665332 33 7
Q ss_pred hHhchHHHHHHHhCCC
Q 005222 368 CVARGCALQCAMLSPA 383 (708)
Q Consensus 368 ava~GAa~~a~~~~~~ 383 (708)
+.|.|+|+.|.-+.+.
T Consensus 300 sAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 300 SAAIGLALIAEDIFSG 315 (326)
T ss_pred hhhhhHHHHHHHHhCC
Confidence 8899999999877665
No 120
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=81.05 E-value=7.2 Score=41.94 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=15.9
Q ss_pred eEEEEEccccceEEEEEe
Q 005222 2 SVVGFDIGNENCVIATVK 19 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~ 19 (708)
.++.||||.||.++|.+.
T Consensus 76 ~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CEEEEecCCceEEEEEEE
Confidence 489999999999999864
No 121
>PLN02920 pantothenate kinase 1
Probab=75.73 E-value=56 Score=35.18 Aligned_cols=48 Identities=10% Similarity=-0.068 Sum_probs=35.2
Q ss_pred CCccEEEEecCCCChH-HHHHHHHhH---h--C-CCCCCCCCchhhHhchHHHHH
Q 005222 330 DKIHSVEIVGSGSRIP-AITRLLTSL---F--G-REPRRSLNASECVARGCALQC 377 (708)
Q Consensus 330 ~~i~~ViLvGG~srip-~v~~~l~~~---f--g-~~v~~~~n~~eava~GAa~~a 377 (708)
.+++.|+++|+..|.+ ..++.|.-. + | .+.....+.....|+||.+..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 3688999999999998 677644433 3 2 445566678889999998654
No 122
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=75.13 E-value=31 Score=36.30 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=37.8
Q ss_pred eCHHHHHHHhhh----hhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHh
Q 005222 298 IKREEFEELASG----LTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLF 355 (708)
Q Consensus 298 itr~~fe~~~~~----~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f 355 (708)
+..++.+++|.. .++-+.+..+++|+..+ .+.++++||-+....+|++++++.
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 334455555554 44555555666666654 566999999999999999999877
No 123
>PRK00976 hypothetical protein; Provisional
Probab=72.08 E-value=23 Score=37.16 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=39.3
Q ss_pred CccEEEEecCCCChH--HHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCC
Q 005222 331 KIHSVEIVGSGSRIP--AITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (708)
Q Consensus 331 ~i~~ViLvGG~srip--~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~ 383 (708)
+++.|+|-||-++.+ .+.+.+++++...+ ..-...+.++|||+.|..+.+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~--a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKKV--LVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcccc--cccCCchHHHHHHHHHHHHhCC
Confidence 478899999999998 88899988885432 2234589999999998776443
No 124
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=72.05 E-value=3.5 Score=41.64 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=16.7
Q ss_pred EEEEEccccceEEEEEeCC
Q 005222 3 VVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (708)
++|||+|||++++++++..
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 7999999999999988743
No 125
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.88 E-value=4.3 Score=47.08 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=28.9
Q ss_pred ceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEE
Q 005222 167 PLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVS 212 (708)
Q Consensus 167 ~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~ 212 (708)
+..+.+-|.|-.++....... ..+ +++++||||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~---~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGL---KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhccc---ccC-CEEEEEcCCcceeeeeee
Confidence 345677777766655443111 112 699999999999999987
No 126
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=70.09 E-value=4.4 Score=36.99 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=18.3
Q ss_pred CeEEEEEccccceEEEEEeCC
Q 005222 1 MSVVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~~~ 21 (708)
|.++|||+|+..+.+|+.++.
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 679999999999999997653
No 127
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=69.66 E-value=15 Score=39.21 Aligned_cols=78 Identities=14% Similarity=0.293 Sum_probs=44.5
Q ss_pred eeecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHHH--HHhccccccC
Q 005222 110 HTFCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTAT--ALGYGIYKTD 187 (708)
Q Consensus 110 ~~~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aa--al~y~~~~~~ 187 (708)
-.+.+.+-...+|+.+++..+....-++..-.++|= .=.+|..-| .++|.....
T Consensus 152 LRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm-----------------------~GtdEGv~aWiTiN~Llg~L- 207 (453)
T KOG1385|consen 152 LRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIM-----------------------DGTDEGVYAWITINYLLGTL- 207 (453)
T ss_pred cccCChhHHHHHHHHHHHHHhccCCccccCCceeec-----------------------cCcccceeeeeehhhhhccc-
Confidence 457788889999999998876322211111112111 111222222 234544332
Q ss_pred CCCCCceEEEEEEeCCcceEEEEEE
Q 005222 188 FANGGKSYIAFVDIGHSDTQVSIVS 212 (708)
Q Consensus 188 ~~~~~~~~vlv~D~Gggt~dvsv~~ 212 (708)
.......+.|+|+|||+|.++..-
T Consensus 208 -~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 208 -GAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred -CCCCCCceEEEEcCCceEEEEEec
Confidence 223367899999999999998765
No 128
>PRK03011 butyrate kinase; Provisional
Probab=69.18 E-value=15 Score=39.33 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=35.9
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhC----CCCCCCCCchhhHhchHHH
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFG----REPRRSLNASECVARGCAL 375 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg----~~v~~~~n~~eava~GAa~ 375 (708)
+++.|+|.||.+..+.+.+.|.+.+. ..+....+-.+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 68999999999999999999988874 3344455667899999864
No 129
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=69.06 E-value=4.9 Score=36.65 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.5
Q ss_pred CeEEEEEccccceEEEEEeCC
Q 005222 1 MSVVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~~~ 21 (708)
|.++||||||-.+.+|+....
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 789999999999999997644
No 130
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=69.03 E-value=14 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=27.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcce
Q 005222 139 DCVIGVPSYFTDLQRREYLNAASIAGLRPL 168 (708)
Q Consensus 139 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~ 168 (708)
...++.|+.++..+|..+.+.|...||..-
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 688999999999999999999999998753
No 131
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=67.72 E-value=1.7e+02 Score=30.89 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=31.3
Q ss_pred ccEEEEecCCCChHHHHHHHHhHh---CCCCCCCC---CchhhHhch
Q 005222 332 IHSVEIVGSGSRIPAITRLLTSLF---GREPRRSL---NASECVARG 372 (708)
Q Consensus 332 i~~ViLvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~G 372 (708)
+..|+|.||.+....+.+.|.+.+ |.++..+. -.|.+++.|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 667999999999999999999965 44443332 247788888
No 132
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=67.11 E-value=12 Score=40.18 Aligned_cols=81 Identities=17% Similarity=0.080 Sum_probs=55.2
Q ss_pred EeCHHHHHHHhhhhhHHHH-HHHHHHHHHcCCCCCCccE-EEEecCCCChHHHHHHHHhHhC-CCCCCCC-CchhhHhch
Q 005222 297 FIKREEFEELASGLTEKIA-IPCRKALADAGLHVDKIHS-VEIVGSGSRIPAITRLLTSLFG-REPRRSL-NASECVARG 372 (708)
Q Consensus 297 ~itr~~fe~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~srip~v~~~l~~~fg-~~v~~~~-n~~eava~G 372 (708)
.-.+.++-..++..++++. ..++.++++.+ ++. |.|.||....-..-..|.+..+ .++..++ -.|..+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 4567777777777776664 45566666665 444 9999999988888888888765 3454444 448899999
Q ss_pred HHHHHHHhCC
Q 005222 373 CALQCAMLSP 382 (708)
Q Consensus 373 Aa~~a~~~~~ 382 (708)
||+++.....
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999986544
No 133
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=66.73 E-value=22 Score=34.89 Aligned_cols=55 Identities=16% Similarity=0.401 Sum_probs=34.4
Q ss_pred CCceEEEEEEeCCcceEEEEEEEeCC-eEEEEEEeCCCC---cchHHHHHHHHHHHHHHHH
Q 005222 191 GGKSYIAFVDIGHSDTQVSIVSFEAG-HMKVLSHAFDSS---LGGRDFDDVLFGYFAAKFK 247 (708)
Q Consensus 191 ~~~~~vlv~D~Gggt~dvsv~~~~~~-~~~v~~~~~~~~---lGG~~id~~l~~~l~~~~~ 247 (708)
.....+|++|+||.++-|+++++.++ .+++....+..+ .-|.. ..|++|+.+.+.
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i~ 118 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCIA 118 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHHH
T ss_pred CCCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHHH
Confidence 34567999999999999999999876 444433322222 11111 556677765543
No 134
>PRK07058 acetate kinase; Provisional
Probab=66.65 E-value=22 Score=38.23 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-ChHHHHHHHHhHhC
Q 005222 307 ASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGS-RIPAITRLLTSLFG 356 (708)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~fg 356 (708)
++-+..++.+.|-......| .+|.|+++||-+ +.+.|++.|.+.++
T Consensus 298 ~d~f~yri~k~IGa~~a~Lg----~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 298 LDLFALRIAGEIARLAATLG----GLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34455556555555544433 699999999999 99999999998774
No 135
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=65.33 E-value=86 Score=32.80 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.7
Q ss_pred CccEEEEecCCCChHHHHHHHHhHh
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLF 355 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~f 355 (708)
.++.|+|.||.+....+++.|.+.+
T Consensus 258 g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 258 GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999887
No 136
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=64.21 E-value=12 Score=43.88 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=37.9
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhC---CCCCCCC---CchhhHhchHHHHHH
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFG---REPRRSL---NASECVARGCALQCA 378 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg---~~v~~~~---n~~eava~GAa~~a~ 378 (708)
.++.|+|+||......+.+.|.+.++ .++..+. --|.++++|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998873 3443332 348999999988774
No 137
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=62.56 E-value=23 Score=27.14 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=32.4
Q ss_pred HHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCcce
Q 005222 126 KDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRPL 168 (708)
Q Consensus 126 ~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~ 168 (708)
.+..+.+.... ....++.|+.++..+|..+.+.|+..||...
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 33344444322 4688999999999999999999999999754
No 138
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=62.25 E-value=6.5 Score=37.01 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.3
Q ss_pred CeEEEEEccccceEEEEEe
Q 005222 1 MSVVGFDIGNENCVIATVK 19 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~ 19 (708)
|-|+|||-|++++..|+..
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 7899999999999999865
No 139
>PTZ00107 hexokinase; Provisional
Probab=62.24 E-value=2.6e+02 Score=31.18 Aligned_cols=40 Identities=8% Similarity=-0.037 Sum_probs=30.5
Q ss_pred cCCCCHHHHHHHHHHHHHcCCc--ceeeecchHHHHHhcccc
Q 005222 145 PSYFTDLQRREYLNAASIAGLR--PLRLIHDCTATALGYGIY 184 (708)
Q Consensus 145 Pa~~~~~qr~~l~~Aa~~AGl~--~~~li~Ep~Aaal~y~~~ 184 (708)
|.--...-.+.|.+|...-|++ ++.++|+.+|+.++.+..
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~ 230 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQ 230 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhc
Confidence 4455566678888888887764 788999999998776554
No 140
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=62.10 E-value=2.2e+02 Score=30.33 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHh
Q 005222 312 EKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLF 355 (708)
Q Consensus 312 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~f 355 (708)
+-+.+.+..+++.. .++.|+++||-+...++|++|++.+
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 33344444455443 4678999999999999999999987
No 141
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=61.51 E-value=7.3 Score=44.07 Aligned_cols=22 Identities=18% Similarity=0.361 Sum_probs=18.0
Q ss_pred Ce-EEEEEccccceEEEEEeCCc
Q 005222 1 MS-VVGFDIGNENCVIATVKHRG 22 (708)
Q Consensus 1 M~-vvGID~GTt~s~va~~~~~~ 22 (708)
|. ++|||+|||++++++++..+
T Consensus 1 ~~~~lgiDiGTts~Ka~l~d~~G 23 (504)
T PTZ00294 1 MKYIGSIDQGTTSTRFIIFDEKG 23 (504)
T ss_pred CcEEEEEecCCCceEEEEECCCC
Confidence 44 79999999999999886443
No 142
>PLN02362 hexokinase
Probab=61.44 E-value=21 Score=40.05 Aligned_cols=34 Identities=21% Similarity=0.042 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCC--cceeeecchHHHHHhccc
Q 005222 150 DLQRREYLNAASIAGL--RPLRLIHDCTATALGYGI 183 (708)
Q Consensus 150 ~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~ 183 (708)
..-.+.|.+|...-|+ +++.++|+.+|..++..+
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 205 KDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred chHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 3345556666655564 578899999998776544
No 143
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=61.31 E-value=72 Score=31.35 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhC---CCCCCCCCchhhHhchHHH
Q 005222 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFG---REPRRSLNASECVARGCAL 375 (708)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg---~~v~~~~n~~eava~GAa~ 375 (708)
.+|.-+.+.-++++...+ -+.|++|||-...-.+|++...+.. -.+ ...|-..|+--|+-+
T Consensus 237 tvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~-faTDeRfCIDNG~MI 300 (336)
T KOG2708|consen 237 TVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKL-FATDERFCIDNGVMI 300 (336)
T ss_pred HHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCce-EecccceeeeCchHH
Confidence 344445555555665544 3569999999999999999999883 222 233444566666654
No 144
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=61.21 E-value=12 Score=33.17 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.7
Q ss_pred EEEEEccccceEEEEEeCCc
Q 005222 3 VVGFDIGNENCVIATVKHRG 22 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (708)
|++||+|++.++++++..+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999988754
No 145
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=61.18 E-value=6.6 Score=44.62 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=16.8
Q ss_pred EEEEEccccceEEEEEeCC
Q 005222 3 VVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (708)
++|||+|||++++++++..
T Consensus 5 ~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 5 LMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 8999999999999988644
No 146
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.89 E-value=54 Score=33.09 Aligned_cols=20 Identities=20% Similarity=0.594 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH-HHHhhcC
Q 005222 626 QEREGISRSLQET-EEWLYDD 645 (708)
Q Consensus 626 ~e~~~l~~~l~e~-~~WL~~~ 645 (708)
.|..+|+..|..+ ++|++++
T Consensus 89 tEI~eLksQL~RMrEDWIEEE 109 (305)
T PF15290_consen 89 TEIDELKSQLARMREDWIEEE 109 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433 3455554
No 147
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=58.49 E-value=2.3e+02 Score=29.38 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCh-HHHHHHHHhHhCCCCCCCCCchhhHhchHHHHHHH
Q 005222 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRI-PAITRLLTSLFGREPRRSLNASECVARGCALQCAM 379 (708)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sri-p~v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~ 379 (708)
.++++....|...++.-.+ ......+.|.||.... |++.....+..-.+. .--+..||.+.|..
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~------~~D~~~GA~~~A~~ 291 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP------IGDALSGAVLLALG 291 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCCc------cccHHHHHHHHHHH
Confidence 4566666666666665431 2245679999998877 888887777664332 44567788887754
No 148
>PLN02914 hexokinase
Probab=57.67 E-value=64 Score=36.12 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHcCC--cceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEE
Q 005222 149 TDLQRREYLNAASIAGL--RPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSF 213 (708)
Q Consensus 149 ~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~ 213 (708)
...-.+.|.+|.+.-|+ ++..++|+.+|..++..... +...+-+=+|-||=-+.+-..
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~-------~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 204 GKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-------DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC-------CCceEEEEEECCeeeEEEeec
Confidence 34445666666665554 57889999999887665432 223333336777666555443
No 149
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=57.59 E-value=83 Score=29.16 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=24.9
Q ss_pred EEEEEEeCCcceEEEEEEEeCCeEEEEEEe
Q 005222 195 YIAFVDIGHSDTQVSIVSFEAGHMKVLSHA 224 (708)
Q Consensus 195 ~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~ 224 (708)
.+|-+|.|-..|-.++++..++.++++..+
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g 30 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASG 30 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEee
Confidence 378899999999999999888877776654
No 150
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.44 E-value=29 Score=30.79 Aligned_cols=23 Identities=22% Similarity=0.627 Sum_probs=19.6
Q ss_pred HHHHHhhcCCCCcCHHHHHHHHH
Q 005222 637 ETEEWLYDDGDDETANTYASKLE 659 (708)
Q Consensus 637 e~~~WL~~~~~~a~~~~~~~kl~ 659 (708)
..++||++++...|.++|++++.
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 45789999988999999998764
No 151
>PLN02405 hexokinase
Probab=56.33 E-value=36 Score=38.12 Aligned_cols=57 Identities=23% Similarity=0.221 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHcCC--cceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEE
Q 005222 149 TDLQRREYLNAASIAGL--RPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVS 212 (708)
Q Consensus 149 ~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~ 212 (708)
...-.+.|.+|...-|+ +++.++|+.++..++..+.. +...+-+=+|-||=-+.+-+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~-------~~~~iG~IlGTGtNacY~E~ 262 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN-------PDVVAAVILGTGTNAAYVER 262 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC-------CCceEEEEEeCCeeeEEEee
Confidence 33445666666666666 47889999999887665432 22333333677665555443
No 152
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=56.26 E-value=9 Score=42.86 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=17.0
Q ss_pred eEEEEEccccceEEEEEeCC
Q 005222 2 SVVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~ 21 (708)
.++|||+|||++++++++..
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 37999999999999987643
No 153
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=55.92 E-value=7.8 Score=40.61 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=17.1
Q ss_pred eEEEEEEeCCcceEEEEEE
Q 005222 194 SYIAFVDIGHSDTQVSIVS 212 (708)
Q Consensus 194 ~~vlv~D~Gggt~dvsv~~ 212 (708)
.+++++||||.|||++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 4599999999999999975
No 154
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=55.88 E-value=1.4e+02 Score=31.07 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=24.9
Q ss_pred CCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCc
Q 005222 164 GLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHS 204 (708)
Q Consensus 164 Gl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Ggg 204 (708)
|++ +.+-|+..|+|++-.+.... .....++++-+|-|
T Consensus 107 ~~P-v~veNDan~aalaE~~~g~~---~~~~~~~~i~~gtG 143 (314)
T COG1940 107 GLP-VFVENDANAAALAEAWFGAG---RGIDDVVYITLGTG 143 (314)
T ss_pred CCC-EEEecHHHHHHHHHHHhCCC---CCCCCEEEEEEccc
Confidence 544 58899999999987654321 23456777777765
No 155
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=55.82 E-value=91 Score=31.69 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=34.8
Q ss_pred CccEEEEecCCCChHH----HHHHHHhHh---C--CCCC--CCCCchhhHhchHHHHHHHhCCC
Q 005222 331 KIHSVEIVGSGSRIPA----ITRLLTSLF---G--REPR--RSLNASECVARGCALQCAMLSPA 383 (708)
Q Consensus 331 ~i~~ViLvGG~srip~----v~~~l~~~f---g--~~v~--~~~n~~eava~GAa~~a~~~~~~ 383 (708)
..+.|+|.|-.+|+|- |++.|++.| | ..+. ...--.--.|.|||+.|..+++.
T Consensus 273 ~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 273 YPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred CcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 5678999999999864 567777776 3 2321 11112233688999988777654
No 156
>PLN02377 3-ketoacyl-CoA synthase
Probab=54.57 E-value=29 Score=38.93 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=51.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEE-ecCCCChHHHHHHHHhHhCCC--C-CCCCCchhhHhchHH
Q 005222 302 EFEELASGLTEKIAIPCRKALADAGLHVDKIHSVEI-VGSGSRIPAITRLLTSLFGRE--P-RRSLNASECVARGCA 374 (708)
Q Consensus 302 ~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~srip~v~~~l~~~fg~~--v-~~~~n~~eava~GAa 374 (708)
.++...++...-+...++++|+++|+++++|+.|++ +.+....|.+-.+|.+.+|.+ + ...++..-|.+.-.+
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~a 240 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIA 240 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHH
Confidence 344555555566677888999999999999999977 455556899999999999853 2 334443344333333
No 157
>PRK02224 chromosome segregation protein; Provisional
Probab=54.35 E-value=1.2e+02 Score=36.91 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhh
Q 005222 571 GMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLF 616 (708)
Q Consensus 571 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~ 616 (708)
..++.+...+..++..+..-+.......+++..++...-..+..++
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD 190 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888887655555555555544445555544444443
No 158
>PRK15027 xylulokinase; Provisional
Probab=54.22 E-value=9.6 Score=42.87 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=16.6
Q ss_pred EEEEEccccceEEEEEeCC
Q 005222 3 VVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (708)
++|||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred EEEEEecccceEEEEEcCC
Confidence 6899999999999988643
No 159
>PRK13318 pantothenate kinase; Reviewed
Probab=52.50 E-value=14 Score=37.66 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.4
Q ss_pred EEEEEccccceEEEEEeCCc
Q 005222 3 VVGFDIGNENCVIATVKHRG 22 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (708)
+++||+|.|+++++++.++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999987543
No 160
>PRK13321 pantothenate kinase; Reviewed
Probab=51.61 E-value=15 Score=37.49 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=17.1
Q ss_pred EEEEEccccceEEEEEeCC
Q 005222 3 VVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (708)
+++||+|+|++++|++.++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999998855
No 161
>PLN02295 glycerol kinase
Probab=51.45 E-value=12 Score=42.56 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=16.3
Q ss_pred EEEEEccccceEEEEEeC
Q 005222 3 VVGFDIGNENCVIATVKH 20 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~ 20 (708)
++|||+|||++++++++.
T Consensus 2 vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred EEEEecCCCceEEEEECC
Confidence 799999999999998864
No 162
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=51.15 E-value=14 Score=42.14 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=16.5
Q ss_pred eEEEEEccccceEEEEEe
Q 005222 2 SVVGFDIGNENCVIATVK 19 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~ 19 (708)
.++|||+|||.+++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 479999999999999987
No 163
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=51.04 E-value=13 Score=42.36 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=16.6
Q ss_pred EEEEEccccceEEEEEeCC
Q 005222 3 VVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (708)
++|||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST 20 (541)
T ss_pred EEEEEecCcCEEEEEEcCC
Confidence 7999999999999988643
No 164
>PLN02596 hexokinase-like
Probab=50.31 E-value=69 Score=35.88 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCC--cceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEE
Q 005222 150 DLQRREYLNAASIAGL--RPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSF 213 (708)
Q Consensus 150 ~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~ 213 (708)
..-.+.+.+|...-|+ +++.++|+.+++.++.++.. +...+-+=+|-||=-+.+-++
T Consensus 205 ~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~-------~~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 205 KALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN-------KDTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC-------CCeEEEEEEecccceEEEEEc
Confidence 3344556666665565 57889999999887766532 223333337777666555544
No 165
>PRK04123 ribulokinase; Provisional
Probab=50.18 E-value=14 Score=42.20 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=16.0
Q ss_pred EEEEEccccceEEEEEe
Q 005222 3 VVGFDIGNENCVIATVK 19 (708)
Q Consensus 3 vvGID~GTt~s~va~~~ 19 (708)
++|||+|||++++++++
T Consensus 5 ~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 5 VIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEecCCCceEEEEEE
Confidence 79999999999999887
No 166
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=50.14 E-value=2.2e+02 Score=32.65 Aligned_cols=120 Identities=15% Similarity=0.228 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhh---hhccCCC--HHHHHHHHHHHHHHHHHhhcCC
Q 005222 572 MTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS---TYRSFAS--DQEREGISRSLQETEEWLYDDG 646 (708)
Q Consensus 572 ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~---~~~~~~~--~~e~~~l~~~l~e~~~WL~~~~ 646 (708)
...+++..+...+..+...+...|. +...|......+|..|.. .|-..+. ++....+....++..+|.....
T Consensus 112 ~~e~~i~~i~~~l~~L~~~e~~nr~---~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD 188 (560)
T PF06160_consen 112 EIEEDIKEILDELDELLESEEKNRE---EIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGD 188 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4466778888888888777776654 345566666677777753 2322222 5567888888899999998753
Q ss_pred CC---cCHHHHHHHHHHHHHhHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Q 005222 647 DD---ETANTYASKLEDLKKLVDPIENRYKD-GEARAQATRDLLQCIVEYRT 694 (708)
Q Consensus 647 ~~---a~~~~~~~kl~~L~~~~~pi~~R~~e-~~~rp~~~~~l~~~l~~~~~ 694 (708)
.. .....+++.+..|......|=.-+.+ ....|..++.|+.-...+..
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~ 240 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEE 240 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 22 23456777888888888877777777 56889999999887776654
No 167
>PLN02939 transferase, transferring glycosyl groups
Probab=49.67 E-value=1.5e+02 Score=36.04 Aligned_cols=123 Identities=10% Similarity=0.093 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhh--hhccCCCHHHHHHHHHHHHHHHHHhhcCCCCc
Q 005222 572 MTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS--TYRSFASDQEREGISRSLQETEEWLYDDGDDE 649 (708)
Q Consensus 572 ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~--~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~~a 649 (708)
+-+++++.++.++.+...-|+....++..+.-|++++-++..++-. +-....++=+.+-+-++++..+.-|+.-...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQV 316 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888999999999999999999999999999998888742 11111222222334444444444443211000
Q ss_pred --------CHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcC
Q 005222 650 --------TANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGS 698 (708)
Q Consensus 650 --------~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~ 698 (708)
...++..|.+.|+... .+.+-++.++..++.+++++...+.-...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (977)
T PLN02939 317 EKAALVLDQNQDLRDKVDKLEASL----KEANVSKFSSYKVELLQQKLKLLEERLQA 369 (977)
T ss_pred HHHHHHhccchHHHHHHHHHHHHH----HHhhHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 1234444555444332 34555667788888888887776655443
No 168
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=48.48 E-value=15 Score=39.42 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=17.6
Q ss_pred EEEEEccccceEEEEEeCCc
Q 005222 3 VVGFDIGNENCVIATVKHRG 22 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (708)
++|||+|+|.+++.++++++
T Consensus 4 ~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred EEEEEcCchhEEEEEEcCCC
Confidence 79999999999998887654
No 169
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.07 E-value=1.1e+02 Score=35.39 Aligned_cols=119 Identities=19% Similarity=0.244 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCCcC
Q 005222 571 GMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDDET 650 (708)
Q Consensus 571 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~~a~ 650 (708)
.||.+.++.+..++..+.+ .+..|.+..+.+..-|+..=..|.-+|...+ .+++.=|.+.+..-+
T Consensus 156 dlsl~kLeelr~~L~~L~~---ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~v------------t~~~~sL~~~~~~~~ 220 (660)
T KOG4302|consen 156 DLSLEKLEELREHLNELQK---EKSDRLEKVLELKEEIKSLCSVLGLDFSMTV------------TDVEPSLVDHDGEQS 220 (660)
T ss_pred cccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCcccch------------hhhhhhhhhccCccc
Confidence 5888999999999999864 4555666777777777777777753333322 333444444322111
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCCcCccc
Q 005222 651 ANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGSLPPEEQDFV 707 (708)
Q Consensus 651 ~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 707 (708)
...-.+.++.|...+..+. .+..+|++.+..|...+..+=..+...++..+.|+
T Consensus 221 ~~is~etl~~L~~~v~~l~---~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~ 274 (660)
T KOG4302|consen 221 RSISDETLDRLDKMVKKLK---EEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFV 274 (660)
T ss_pred ccCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHc
Confidence 2222444555555555444 46778888899999999988888888888887775
No 170
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=48.04 E-value=54 Score=31.29 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCC-cCHHHHHHHHHHHHHhHHHHHHH
Q 005222 606 SYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDD-ETANTYASKLEDLKKLVDPIENR 671 (708)
Q Consensus 606 s~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~~-a~~~~~~~kl~~L~~~~~pi~~R 671 (708)
.|+-++|..|. ..+++|++++ ++.++++++|.+++ .+.++..+.|-.-+++.+.+..-
T Consensus 5 efL~~L~~~L~-----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 5 EFLNELEKYLK-----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHH-----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 34455555553 2566665544 66667777765433 45566666666666666666643
No 171
>PRK00047 glpK glycerol kinase; Provisional
Probab=47.88 E-value=16 Score=41.25 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=16.6
Q ss_pred EEEEEccccceEEEEEeCC
Q 005222 3 VVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~ 21 (708)
++|||+|||++++++++..
T Consensus 7 ~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 7 ILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 7999999999999988643
No 172
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=47.79 E-value=43 Score=34.06 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=36.8
Q ss_pred CCCccEEEEecCCCChHHHHHHHHhHhC--CCC--CCCCCchhhHhchHHH
Q 005222 329 VDKIHSVEIVGSGSRIPAITRLLTSLFG--REP--RRSLNASECVARGCAL 375 (708)
Q Consensus 329 ~~~i~~ViLvGG~srip~v~~~l~~~fg--~~v--~~~~n~~eava~GAa~ 375 (708)
+..+|.|+|+||.++...+-++|.++.. .++ .-.-+-.+|.|.|+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 4579999999999999999999998874 233 3344667789999853
No 173
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=47.43 E-value=17 Score=41.08 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=17.0
Q ss_pred eEEEEEccccceEEEEEeCC
Q 005222 2 SVVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~ 21 (708)
.++|||+|||++++++++..
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred eEEEEecCCCceEEEEECCC
Confidence 37999999999999988643
No 174
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.17 E-value=63 Score=32.45 Aligned_cols=82 Identities=18% Similarity=0.311 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHhhhhhccCCCHHH-HHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHH----HHHhhh
Q 005222 602 NALESYVYEMRNKLFSTYRSFASDQE-REGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIEN----RYKDGE 676 (708)
Q Consensus 602 N~LEs~iy~~r~~l~~~~~~~~~~~e-~~~l~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~----R~~e~~ 676 (708)
+.||..+-.+=..|- +.+- -.-++++...+=.||.++++...++. .++++.-.+++..|.. --+...
T Consensus 142 g~le~~m~~iMqqll-------SKEILyeplKEl~~~YPkwLeen~e~l~~E~-~erYqkQ~~~i~~i~~~~e~e~~Ds~ 213 (267)
T KOG3133|consen 142 GDLEPIMESIMQQLL-------SKEILYEPLKELGANYPKWLEENGESLSKED-KERYQKQFELIKEIESVYENEPNDSA 213 (267)
T ss_pred ccHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHhhHHHHhcccccCHHH-HHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 555665555444442 2222 15688899999999999987765433 4555555555555544 333344
Q ss_pred HHHHHHHHHHHHHHH
Q 005222 677 ARAQATRDLLQCIVE 691 (708)
Q Consensus 677 ~rp~~~~~l~~~l~~ 691 (708)
..++.|-.|-+.|+.
T Consensus 214 ~~k~~v~elm~eLQe 228 (267)
T KOG3133|consen 214 THKDKVLELMQELQE 228 (267)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455577777777776
No 175
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=45.07 E-value=46 Score=25.13 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCcc
Q 005222 124 HLKDVAEKNLEMPVVDCVIGVPSYFTDLQRREYLNAASIAGLRP 167 (708)
Q Consensus 124 ~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 167 (708)
.+.+..+.++... .-.++-|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444444454433 45679999 89999999999999998864
No 176
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=44.60 E-value=51 Score=37.62 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=38.3
Q ss_pred CccEEEEecCCCChHHHHHHHHhHh---CCCCCCCC---CchhhHhchHHHHHHHhC
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLF---GREPRRSL---NASECVARGCALQCAMLS 381 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~f---g~~v~~~~---n~~eava~GAa~~a~~~~ 381 (708)
.++.|+|+||-+...++++.|.+.+ |.++..+. -.|.+++.|++.+....+
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 3567999999999999999999766 44444443 458899999887655443
No 177
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=44.22 E-value=60 Score=37.21 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=44.5
Q ss_pred HHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCC-------CCc---CHHHHHHHHHHHHHhHHHH
Q 005222 599 DKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDG-------DDE---TANTYASKLEDLKKLVDPI 668 (708)
Q Consensus 599 ~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~-------~~a---~~~~~~~kl~~L~~~~~pi 668 (708)
.+..+|+..|-.+|..++ ++.++..+.+.+.+.|++... -.+ ..++...+.++|.+.+.||
T Consensus 652 k~~d~~~~~i~~~r~~~~---------~~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i 722 (727)
T KOG0103|consen 652 KAFDELGKKIQEIRKAIE---------SEMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDI 722 (727)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccccccc
Confidence 344445445555444443 277889999999999999752 112 3388899999999999998
Q ss_pred HHH
Q 005222 669 ENR 671 (708)
Q Consensus 669 ~~R 671 (708)
..+
T Consensus 723 ~~~ 725 (727)
T KOG0103|consen 723 ISK 725 (727)
T ss_pred ccc
Confidence 764
No 178
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=43.95 E-value=43 Score=25.62 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=26.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcce
Q 005222 139 DCVIGVPSYFTDLQRREYLNAASIAGLRPL 168 (708)
Q Consensus 139 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~ 168 (708)
.-.++.|+.+++.+|+.+...|...||...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 567778999999999999999999999754
No 179
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=43.76 E-value=19 Score=33.45 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=15.5
Q ss_pred EEEEEccccceEEEEEe
Q 005222 3 VVGFDIGNENCVIATVK 19 (708)
Q Consensus 3 vvGID~GTt~s~va~~~ 19 (708)
|+|||.|++++..|+..
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999864
No 180
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=43.66 E-value=5e+02 Score=28.92 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=49.1
Q ss_pred EEecCCCCHHHHHHHHHHHHHcCCc---ceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEe
Q 005222 142 IGVPSYFTDLQRREYLNAASIAGLR---PLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFE 214 (708)
Q Consensus 142 itVPa~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~ 214 (708)
+.++.-....--+.+.+|.+.-|+. +..++|+.++..++..... ++.++-+=+|.||--+-+.+..
T Consensus 183 f~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~-------~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 183 FKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED-------PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred ccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC-------CCcEEEEEECCCccceeeeecc
Confidence 3445555566688999999998876 7789999999887765532 4566667789998887777665
No 181
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=43.57 E-value=77 Score=24.20 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=26.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcce
Q 005222 139 DCVIGVPSYFTDLQRREYLNAASIAGLRPL 168 (708)
Q Consensus 139 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~ 168 (708)
...+..|+.++..||..+.+.|+..||...
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 367899999999999999999999998753
No 182
>PF13941 MutL: MutL protein
Probab=43.04 E-value=19 Score=39.78 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=22.1
Q ss_pred CCCCCccEEEEecC-CCChHHHHHHHHhHh
Q 005222 327 LHVDKIHSVEIVGS-GSRIPAITRLLTSLF 355 (708)
Q Consensus 327 ~~~~~i~~ViLvGG-~srip~v~~~l~~~f 355 (708)
.+...++.|+-+|| .++.|.-.+.|...+
T Consensus 381 kDL~~v~~iIgtGGvL~h~~~~~~il~~~~ 410 (457)
T PF13941_consen 381 KDLTRVKYIIGTGGVLTHSPNPEEILKAAL 410 (457)
T ss_pred cccccCCEEEEeCccccCCCCHHHHHHHHh
Confidence 34447889999999 677888777777776
No 183
>PRK10869 recombination and repair protein; Provisional
Probab=42.86 E-value=5.7e+02 Score=29.30 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhcchhHH----HHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHH
Q 005222 576 ELALAQETENLLAQQDITME----QTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQET 638 (708)
Q Consensus 576 e~~~~~~~~~~~~~~D~~~~----~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~ 638 (708)
.+......+..+...|.... ...++...||...+.+++.+++ -...|++.+.+.+-+..+
T Consensus 245 ~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~dp~~l~~ie~Rl~~l 308 (553)
T PRK10869 245 QLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDR---LDLDPNRLAELEQRLSKQ 308 (553)
T ss_pred HHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHH
Confidence 45666666666666664432 2334555555555555555432 123444444444444333
No 184
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.92 E-value=3.5e+02 Score=31.18 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhh---hhccCCC--HHHHHHHHHHHHHHHHHhhcCC
Q 005222 572 MTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS---TYRSFAS--DQEREGISRSLQETEEWLYDDG 646 (708)
Q Consensus 572 ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~---~~~~~~~--~~e~~~l~~~l~e~~~WL~~~~ 646 (708)
...+++..+.+.+..+...+...+. +...|...--.+|..|-. .|-+... +.....+....++..+|.....
T Consensus 116 ~~e~~~~~i~~~l~~l~~~e~~nr~---~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd 192 (569)
T PRK04778 116 LIEEDIEQILEELQELLESEEKNRE---EVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGD 192 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566778888888888877776654 445566666677777753 2322222 5667889999999999998754
Q ss_pred CCc---CHHHHHHHHHHHHHhHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHH
Q 005222 647 DDE---TANTYASKLEDLKKLVDPIENRYKDGEA-RAQATRDLLQCIVEYRT 694 (708)
Q Consensus 647 ~~a---~~~~~~~kl~~L~~~~~pi~~R~~e~~~-rp~~~~~l~~~l~~~~~ 694 (708)
... ....+++.+..|......|=.-+.+... .|..++.|+.-..++..
T Consensus 193 ~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~ 244 (569)
T PRK04778 193 YVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVE 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 332 3455677777888888877666777776 89999999888776654
No 185
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=41.51 E-value=1.2e+02 Score=30.79 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=34.6
Q ss_pred CCHHHH-HHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHh
Q 005222 623 ASDQER-EGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKD 674 (708)
Q Consensus 623 ~~~~e~-~~l~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (708)
++.+-. +-++++..++-.||.++....+.++| +|+..=..++..|...|..
T Consensus 136 ~SKevLYePmKel~~kyP~wL~~n~~~l~~ed~-~rY~~Q~~~v~~I~~~fE~ 187 (248)
T PF04614_consen 136 LSKEVLYEPMKELRDKYPEWLEENKSKLSAEDY-ERYEKQYELVKEICAIFEK 187 (248)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHCCCS-HHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ccHhhhhhhHHHHHHHhHHHHHhCcCcCCHHHH-HHHHHHHHHHHHHHHHHcC
Confidence 344433 67889999999999999888777773 3555555566666665554
No 186
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=41.27 E-value=88 Score=34.21 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=36.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhC
Q 005222 303 FEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFG 356 (708)
Q Consensus 303 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg 356 (708)
++++-+-+++.+..++.+.+.++++.+++|..++++|-++..-.+.-.=-+.++
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~ 108 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLG 108 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhc
Confidence 445555677888889999999999999999999999987766555444334444
No 187
>PLN03173 chalcone synthase; Provisional
Probab=41.01 E-value=89 Score=34.02 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-ChHHHHHHHHhHhCCCC
Q 005222 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGS-RIPAITRLLTSLFGREP 359 (708)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~fg~~v 359 (708)
...+-..+.++++|+++|+.+++|+.|+++..+. ..|.+--.|.+.+|.+.
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 4445556678889999999999999998877554 58999999999998543
No 188
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.90 E-value=3.4e+02 Score=26.14 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=13.8
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q 005222 569 YGGMTKPELALAQETENLLA 588 (708)
Q Consensus 569 ~~~ls~~e~~~~~~~~~~~~ 588 (708)
+..++.+.......++..+.
T Consensus 56 YWsFps~~~~~~~~~~~~l~ 75 (188)
T PF03962_consen 56 YWSFPSQAKQKRQNKLEKLQ 75 (188)
T ss_pred EEecChHHHHHHHHHHHHHH
Confidence 35688888777776666654
No 189
>PRK13331 pantothenate kinase; Reviewed
Probab=40.05 E-value=29 Score=35.08 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.2
Q ss_pred CeEEEEEccccceEEEEEeCCc
Q 005222 1 MSVVGFDIGNENCVIATVKHRG 22 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~~~~ 22 (708)
|.++.||.|+|++++++++++.
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 5689999999999999998654
No 190
>PLN03170 chalcone synthase; Provisional
Probab=39.95 E-value=80 Score=34.51 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=42.7
Q ss_pred HhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-ChHHHHHHHHhHhCCCC
Q 005222 306 LASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGS-RIPAITRLLTSLFGREP 359 (708)
Q Consensus 306 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~fg~~v 359 (708)
..+...+-..+..+++|+++|+++++|+.|+++-.+. .+|.+.-.|.+.+|.+.
T Consensus 102 ~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 156 (401)
T PLN03170 102 VVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRP 156 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCc
Confidence 3334555566778899999999999999988777544 69999999999998543
No 191
>PLN02854 3-ketoacyl-CoA synthase
Probab=39.59 E-value=70 Score=36.09 Aligned_cols=54 Identities=7% Similarity=0.116 Sum_probs=40.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEE-ecCCCChHHHHHHHHhHhCCC
Q 005222 305 ELASGLTEKIAIPCRKALADAGLHVDKIHSVEI-VGSGSRIPAITRLLTSLFGRE 358 (708)
Q Consensus 305 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~srip~v~~~l~~~fg~~ 358 (708)
+..++.-.-+...++++|+++|+++++|+.||+ +.+....|.+-.+|.+.+|.+
T Consensus 183 ~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 183 EARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 333333334556778899999999999999987 444556899999999999853
No 192
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=38.83 E-value=14 Score=40.48 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=39.4
Q ss_pred ccEEEEecCCCChHHHHHHHHhHhC------CC---------CCCCCCchhhHhchHHHHHHHhC
Q 005222 332 IHSVEIVGSGSRIPAITRLLTSLFG------RE---------PRRSLNASECVARGCALQCAMLS 381 (708)
Q Consensus 332 i~~ViLvGG~srip~v~~~l~~~fg------~~---------v~~~~n~~eava~GAa~~a~~~~ 381 (708)
.+.|.+|||+...|++.+.|++..- .. ..+..||...+=.|||++|.+-.
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 4689999999999999999998862 11 12346888888999999987644
No 193
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=38.55 E-value=46 Score=34.42 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCC-------CCCCCCCchhhHhchHHHHHH
Q 005222 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGR-------EPRRSLNASECVARGCALQCA 378 (708)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~-------~v~~~~n~~eava~GAa~~a~ 378 (708)
.++++....+-.++...- ..-+++.|+|-||.+..+.+.+.+++.+.. ++....-.+.+.++|||.++.
T Consensus 212 ~~~~~~~~~la~~l~~l~-~~~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 212 ALINRSAQAIARLIADLK-ATLDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 344444444444443321 011467888888877666666666665531 122233456788999998763
No 194
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=37.86 E-value=40 Score=30.85 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=17.8
Q ss_pred CeEEEEEccccceEEEEEeC
Q 005222 1 MSVVGFDIGNENCVIATVKH 20 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~~ 20 (708)
|.|++||.|+-|...++...
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 88999999999999888763
No 195
>PRK03918 chromosome segregation protein; Provisional
Probab=37.52 E-value=5.1e+02 Score=31.50 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHH
Q 005222 623 ASDQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPI 668 (708)
Q Consensus 623 ~~~~e~~~l~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi 668 (708)
..+++.+.+...+..++..+.+- ....+.++.++..|..-...+
T Consensus 656 ~~~~~~~~l~~~~~~l~~~l~~l--~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 656 YSEEEYEELREEYLELSRELAGL--RAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776542 123344444444444433333
No 196
>PLN03172 chalcone synthase family protein; Provisional
Probab=37.40 E-value=97 Score=33.75 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-ChHHHHHHHHhHhCCC
Q 005222 303 FEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGS-RIPAITRLLTSLFGRE 358 (708)
Q Consensus 303 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~fg~~ 358 (708)
.+...+...+-..+.++++|+++|+.+++|+.|+++..+. .+|.+--.|.+.+|.+
T Consensus 95 ~~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~ 151 (393)
T PLN03172 95 QDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLK 151 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCC
Confidence 3333344555566778899999999999999998777555 6999999999999854
No 197
>PLN02902 pantothenate kinase
Probab=37.36 E-value=2.6e+02 Score=33.50 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=30.3
Q ss_pred CCccEEEEecCCCCh-----HHHHHHHHhHh--C-CCCCCCCCchhhHhchHHHHHH
Q 005222 330 DKIHSVEIVGSGSRI-----PAITRLLTSLF--G-REPRRSLNASECVARGCALQCA 378 (708)
Q Consensus 330 ~~i~~ViLvGG~sri-----p~v~~~l~~~f--g-~~v~~~~n~~eava~GAa~~a~ 378 (708)
.+++.|+++|+.-|- ..+...+. ++ | .+.....+-...-|+||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 368889999998663 33444444 34 2 3444455666788999986554
No 198
>PLN02669 xylulokinase
Probab=36.52 E-value=31 Score=39.53 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=16.9
Q ss_pred eEEEEEccccceEEEEEeCC
Q 005222 2 SVVGFDIGNENCVIATVKHR 21 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~ 21 (708)
.++|||+||+.+++++++..
T Consensus 9 ~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 9 LFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred eEEEEecccCCeEEEEEcCC
Confidence 47999999999999887633
No 199
>PRK10869 recombination and repair protein; Provisional
Probab=36.20 E-value=4.2e+02 Score=30.37 Aligned_cols=126 Identities=12% Similarity=0.099 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHH--------HHHHHHHHhhh--hhccCC----C--HHHHHHHHHH
Q 005222 571 GMTKPELALAQETENLLAQQDITMEQTKDKKNALES--------YVYEMRNKLFS--TYRSFA----S--DQEREGISRS 634 (708)
Q Consensus 571 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs--------~iy~~r~~l~~--~~~~~~----~--~~e~~~l~~~ 634 (708)
.+.+.|-+++..+...+...++.......+.+.|.. .+..+.+.|.. .+.+.+ . .+-...+.+.
T Consensus 201 ~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~ 280 (553)
T PRK10869 201 APQPGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEA 280 (553)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777777777777777766632 23344444432 111000 0 1122334444
Q ss_pred HHHHHHHhhcC-CCCcCHHHHHHHHHHHHHhHH--------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 005222 635 LQETEEWLYDD-GDDETANTYASKLEDLKKLVD--------------PIENRYKDGEARAQATRDLLQCIVEYRTAV 696 (708)
Q Consensus 635 l~e~~~WL~~~-~~~a~~~~~~~kl~~L~~~~~--------------pi~~R~~e~~~rp~~~~~l~~~l~~~~~~~ 696 (708)
..++..++++- .+....++++++|..|+.+.. .+..+..+..+..+.++.|++.+..+++.+
T Consensus 281 ~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l 357 (553)
T PRK10869 281 SDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQA 357 (553)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 44555555532 223445778888877776543 344555555566666666666666655443
No 200
>PRK09557 fructokinase; Reviewed
Probab=36.11 E-value=57 Score=33.94 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=28.0
Q ss_pred cCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEE
Q 005222 163 AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (708)
Q Consensus 163 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~ 211 (708)
.|++ +.+.|+..|+|++-...... ...++++++.+|.| +-.+++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~---~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAA---AGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhccc---CCCCcEEEEEEccc-eEEEEE
Confidence 3775 67999999999875443211 23467888888754 444444
No 201
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.95 E-value=6.5e+02 Score=29.47 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHhh-cchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHh
Q 005222 572 MTKPELALAQETENLLAQ-QDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWL 642 (708)
Q Consensus 572 ls~~e~~~~~~~~~~~~~-~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL 642 (708)
++..++..+...+..... .-....+..+....+|.-+-.+..+|.. .-.+++.+++.+.+++++.=+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~----~~~~e~i~~l~e~l~~l~~~l 437 (650)
T TIGR03185 370 LSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST----IPSEEQIAQLLEELGEAQNEL 437 (650)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHH
Confidence 555555544433333331 2223333344445555555555555542 223344444444444444433
No 202
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=35.57 E-value=68 Score=33.40 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=28.4
Q ss_pred cCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEE
Q 005222 163 AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (708)
Q Consensus 163 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~ 211 (708)
.|++ +.+-|+..|+|++-...... .....++++.+|.| +-.+++
T Consensus 96 ~~~p-V~ieNDa~aaalaE~~~g~~---~~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 96 LGRD-VRLDNDANCFALSEAWDDEF---TQYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HCCC-eEEeccHhHHHHHHhhhccc---cCCCcEEEEEecCc-eEEEEE
Confidence 4775 67999999999874432211 23467888888865 344444
No 203
>PLN03168 chalcone synthase; Provisional
Probab=34.72 E-value=98 Score=33.69 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=42.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCC-CChHHHHHHHHhHhCCC
Q 005222 303 FEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSG-SRIPAITRLLTSLFGRE 358 (708)
Q Consensus 303 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-srip~v~~~l~~~fg~~ 358 (708)
.+...+...+-..+..+++|+++|+++++|+.|+++-.+ -.+|.+--.|.+.+|.+
T Consensus 94 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 150 (389)
T PLN03168 94 HDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLK 150 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcC
Confidence 333344555556777889999999999999999876433 35899999999999854
No 204
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.55 E-value=4.2e+02 Score=31.86 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHHh-hcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCC--
Q 005222 571 GMTKPELALAQETENLLA-QQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGD-- 647 (708)
Q Consensus 571 ~ls~~e~~~~~~~~~~~~-~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~-- 647 (708)
+|+++-+++..+.+..-. .-++....+++.+..+|...-.+...+ .+.+++.+.+.+..+||.....
T Consensus 498 Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~----------~e~~~~~~~l~~~~~~l~~~~~~~ 567 (782)
T PRK00409 498 GLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALL----------KEAEKLKEELEEKKEKLQEEEDKL 567 (782)
T ss_pred CcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888777654322 223333333333333333333332222 2334444445555555544311
Q ss_pred -CcCHHHHHHHHHHHHHhHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHH
Q 005222 648 -DETANTYASKLEDLKKLVDPIENRYKDG------EARAQATRDLLQCIVEYRT 694 (708)
Q Consensus 648 -~a~~~~~~~kl~~L~~~~~pi~~R~~e~------~~rp~~~~~l~~~l~~~~~ 694 (708)
....+++++.+++.+.-+..+...+++. ....+.+....+.++.++.
T Consensus 568 ~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~ 621 (782)
T PRK00409 568 LEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANE 621 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhh
Confidence 1223445555555555555555555542 2345555556666665544
No 205
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=34.45 E-value=2.5e+02 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=23.5
Q ss_pred EEEEEeCCcceEEEEEEEeCCeEEEEEEe
Q 005222 196 IAFVDIGHSDTQVSIVSFEAGHMKVLSHA 224 (708)
Q Consensus 196 vlv~D~Gggt~dvsv~~~~~~~~~v~~~~ 224 (708)
+|-+|-|-.+|-.++++..++.++.+.++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G 29 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYG 29 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeC
Confidence 57799999999999999988888887775
No 206
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=34.19 E-value=56 Score=28.67 Aligned_cols=48 Identities=31% Similarity=0.493 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChH--HHHHHHHhHhC
Q 005222 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIP--AITRLLTSLFG 356 (708)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip--~v~~~l~~~fg 356 (708)
|--..+...|+++|+++++++++|+.|..-|-++..- .=.+.|.+.|+
T Consensus 22 p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~ 71 (119)
T PF02801_consen 22 PNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFG 71 (119)
T ss_dssp TTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHG
T ss_pred cCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhc
Confidence 4445667789999999999999999999999887753 33456778885
No 207
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=34.19 E-value=21 Score=32.96 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.6
Q ss_pred EEEEEccccceEEEEEe
Q 005222 3 VVGFDIGNENCVIATVK 19 (708)
Q Consensus 3 vvGID~GTt~s~va~~~ 19 (708)
|+|||-|++++..|+..
T Consensus 1 ILGIDPgl~~tG~avi~ 17 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIE 17 (149)
T ss_dssp EEEEE--SSEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEE
Confidence 79999999999999875
No 208
>PHA02557 22 prohead core protein; Provisional
Probab=33.80 E-value=3.2e+02 Score=27.73 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHH-HHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHH
Q 005222 576 ELALAQETENLLAQQDITMEQTKDKKNALESYV-YEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDDETANTY 654 (708)
Q Consensus 576 e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~i-y~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~~a~~~~~ 654 (708)
.+..+..++.++ ..+.....+..+.|+.+| |..|+.+-.+-..-+++.+++++..++.-++- .+.|
T Consensus 142 vV~em~~~L~E~---e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egvef----------~e~F 208 (271)
T PHA02557 142 VVAEMEEELDEM---EEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGLEF----------SETF 208 (271)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhccch----------hhHH
Confidence 355555555554 445555667778888887 66777775555677889999999988865431 3789
Q ss_pred HHHHHHHHHhHHHHHH
Q 005222 655 ASKLEDLKKLVDPIEN 670 (708)
Q Consensus 655 ~~kl~~L~~~~~pi~~ 670 (708)
..||..|...+.+...
T Consensus 209 ~~kl~~i~E~v~~~~~ 224 (271)
T PHA02557 209 SKKLTAIVEMVFKSKD 224 (271)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999888766544
No 209
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=33.79 E-value=2.6e+02 Score=23.27 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhh--cchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcC
Q 005222 575 PELALAQETENLLAQ--QDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDD 645 (708)
Q Consensus 575 ~e~~~~~~~~~~~~~--~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~ 645 (708)
+++..++..+..+.. .|.-.....+++..+++.+-.+|+.+.+ ....-+++.......+++|+.++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED-----AADQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHC
Confidence 456666666666653 3445556677777777777777777765 22334556666666667666665
No 210
>PRK13320 pantothenate kinase; Reviewed
Probab=33.60 E-value=44 Score=33.74 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=18.8
Q ss_pred CeEEEEEccccceEEEEEeCCc
Q 005222 1 MSVVGFDIGNENCVIATVKHRG 22 (708)
Q Consensus 1 M~vvGID~GTt~s~va~~~~~~ 22 (708)
|.++.||.|+|+++.+++.++.
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECCE
Confidence 4589999999999999988654
No 211
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=33.40 E-value=28 Score=31.32 Aligned_cols=17 Identities=24% Similarity=0.435 Sum_probs=14.8
Q ss_pred EEEEccccceEEEEEeC
Q 005222 4 VGFDIGNENCVIATVKH 20 (708)
Q Consensus 4 vGID~GTt~s~va~~~~ 20 (708)
+|||+|+..+.+|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998654
No 212
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=32.66 E-value=8.3e+02 Score=30.36 Aligned_cols=21 Identities=14% Similarity=0.329 Sum_probs=14.4
Q ss_pred eEEEEecCCCCHHHHHHHHHH
Q 005222 139 DCVIGVPSYFTDLQRREYLNA 159 (708)
Q Consensus 139 ~~VitVPa~~~~~qr~~l~~A 159 (708)
.+-..+|.||.+.-|+.-.++
T Consensus 999 hCe~Ck~Gf~GdA~~q~CqrC 1019 (1758)
T KOG0994|consen 999 HCEHCKDGFYGDALRQNCQRC 1019 (1758)
T ss_pred chhhccccchhHHHHhhhhhh
Confidence 456677777777777766665
No 213
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=32.62 E-value=5.3e+02 Score=25.92 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=54.4
Q ss_pred HHhhhHHHHHHHHHHHhhhh--hccCCCHHHHHHHHHHHHHHHHHhhcCCCC--cCHHHHHHHHHHHHHhHHHHHHHHHh
Q 005222 599 DKKNALESYVYEMRNKLFST--YRSFASDQEREGISRSLQETEEWLYDDGDD--ETANTYASKLEDLKKLVDPIENRYKD 674 (708)
Q Consensus 599 ~a~N~LEs~iy~~r~~l~~~--~~~~~~~~e~~~l~~~l~e~~~WL~~~~~~--a~~~~~~~kl~~L~~~~~pi~~R~~e 674 (708)
.+.-.|..-+..+...+.++ .....-+.....|...+.++.+-++.+... ..-..+..||.++.....-... .|
T Consensus 92 ~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~--~E 169 (247)
T PF06705_consen 92 SRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIE--KE 169 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 33344444444444444321 111111333445666666666666654111 1123344444444443333333 56
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCcCcc
Q 005222 675 GEARAQATRDLLQCIVEYRTAVGSLPPEEQDF 706 (708)
Q Consensus 675 ~~~rp~~~~~l~~~l~~~~~~~~~~~~~~~~~ 706 (708)
...|...+..|++.+..+...-...+++=+.|
T Consensus 170 k~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~ 201 (247)
T PF06705_consen 170 KNTRESKLSELRSELEEVKRRREKGDEQFQNF 201 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 77788888888888888776655555444433
No 214
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.62 E-value=1.1e+02 Score=30.76 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=43.8
Q ss_pred EEEEEEeCCcceEEEEEEEeCC-eE----------------------EEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhc
Q 005222 195 YIAFVDIGHSDTQVSIVSFEAG-HM----------------------KVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYK 251 (708)
Q Consensus 195 ~vlv~D~Gggt~dvsv~~~~~~-~~----------------------~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~ 251 (708)
++|++|+|.||.|+-.+.-... .+ .-+.-. +...||--.+.++.+|+.. +
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~------G 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKK------G 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhc------C
Confidence 5799999999999877653210 00 011222 4578999999999988853 2
Q ss_pred ccccCCHHHHHHHHHHHHHhhh
Q 005222 252 INVYSNVRACIRLRAACEKLKK 273 (708)
Q Consensus 252 ~~~~~~~~~~~rL~~~~e~~K~ 273 (708)
..+...+++-.-+....|+++.
T Consensus 75 ~rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHh
Confidence 2333344444445555555554
No 215
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=32.55 E-value=48 Score=35.48 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=33.4
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhC--CCCCC--CCCchhhHhchHH
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFG--REPRR--SLNASECVARGCA 374 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg--~~v~~--~~n~~eava~GAa 374 (708)
+++.|++.||-+..+.+.+.|.+.+. .++.. ..+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 57899999999999999999998885 34432 2344667888875
No 216
>PRK00292 glk glucokinase; Provisional
Probab=32.28 E-value=40 Score=35.39 Aligned_cols=49 Identities=31% Similarity=0.302 Sum_probs=29.5
Q ss_pred HcCCcceeeecchHHHHHhcccccc----CCCCC---CceEEEEEEeCCcceEEEEE
Q 005222 162 IAGLRPLRLIHDCTATALGYGIYKT----DFANG---GKSYIAFVDIGHSDTQVSIV 211 (708)
Q Consensus 162 ~AGl~~~~li~Ep~Aaal~y~~~~~----~~~~~---~~~~vlv~D~Gggt~dvsv~ 211 (708)
..|++.+.+.|+..|+|++-..... .+... ....++++-+|.| +-.+++
T Consensus 89 ~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv 144 (316)
T PRK00292 89 ELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGL 144 (316)
T ss_pred HhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEE
Confidence 4588778999999999987533100 00001 1357888888866 344443
No 217
>PRK13326 pantothenate kinase; Reviewed
Probab=31.89 E-value=47 Score=33.93 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=18.3
Q ss_pred eEEEEEccccceEEEEEeCCc
Q 005222 2 SVVGFDIGNENCVIATVKHRG 22 (708)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~ 22 (708)
.++.||.|+|+++++++++++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 478999999999999998654
No 218
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.58 E-value=8.4e+02 Score=27.96 Aligned_cols=63 Identities=19% Similarity=0.100 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhcchhH----HHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHh
Q 005222 575 PELALAQETENLLAQQDITM----EQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWL 642 (708)
Q Consensus 575 ~e~~~~~~~~~~~~~~D~~~----~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL 642 (708)
..+..+...+..+ .|... ....++...||...+.+++.+++ -...|+..+.+.+.+.....-.
T Consensus 251 ~~l~~~~~~l~~~--~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~---l~~dp~~L~ele~RL~~l~~Lk 317 (563)
T TIGR00634 251 EGLGEAQLALASV--IDGSLRELAEQVGNALTEVEEATRELQNYLDE---LEFDPERLNEIEERLAQIKRLK 317 (563)
T ss_pred HHHHHHHHHHHHh--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555554 33222 22333444455555555554432 1334556666666555554433
No 219
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=31.29 E-value=5.5e+02 Score=25.76 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=63.4
Q ss_pred HhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHH-HhHHHHHHHHHhhhHH
Q 005222 600 KKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLK-KLVDPIENRYKDGEAR 678 (708)
Q Consensus 600 a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~-~~~~pi~~R~~e~~~r 678 (708)
....|+...|.++..++.+ ....+.....|...++++..|-....+. =..-+.+.+..|+ .+..-...|..+...-
T Consensus 151 i~krl~e~~~~l~~~i~~E--k~~Re~~~~~l~~~le~~~~~~~~~~e~-f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~I 227 (247)
T PF06705_consen 151 ILKRLEEEENRLQEKIEKE--KNTRESKLSELRSELEEVKRRREKGDEQ-FQNFVLEEIAALKNALALESQEREQSDDDI 227 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4467777788888888642 2233556677777788887776543211 1122344555555 4556777888888888
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 005222 679 AQATRDLLQCIVEYRTAVG 697 (708)
Q Consensus 679 p~~~~~l~~~l~~~~~~~~ 697 (708)
-++|...-+.|++..+.+.
T Consensus 228 v~aln~yt~~lQ~~L~~i~ 246 (247)
T PF06705_consen 228 VQALNHYTKALQDGLRIIN 246 (247)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 8999999999998776654
No 220
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=31.24 E-value=1.2e+02 Score=31.11 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=31.9
Q ss_pred EEEEecCCCC-hHHHHHHHHhHh----CCCCCCCCCchhhHhchHHHHHHHhCC
Q 005222 334 SVEIVGSGSR-IPAITRLLTSLF----GREPRRSLNASECVARGCALQCAMLSP 382 (708)
Q Consensus 334 ~ViLvGG~sr-ip~v~~~l~~~f----g~~v~~~~n~~eava~GAa~~a~~~~~ 382 (708)
.|++|||.-. ...+++-....+ +.+-.....|-+.-|+|||++||.+.+
T Consensus 266 ~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 266 PIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred eEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 6999999543 444444333322 122234557888999999999997765
No 221
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=31.18 E-value=3.6e+02 Score=30.02 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCceEEEEEEeCCcceEEEEEEEeCCe
Q 005222 191 GGKSYIAFVDIGHSDTQVSIVSFEAGH 217 (708)
Q Consensus 191 ~~~~~vlv~D~Gggt~dvsv~~~~~~~ 217 (708)
.+...++.+|+||..+-|..+.+.++.
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 83 TEKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred CcCCCEEEEecCCCceEEEEEEecCCc
Confidence 456789999999999999999998773
No 222
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=30.67 E-value=47 Score=32.59 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCc---ceeeecchHHHHHhcc
Q 005222 151 LQRREYLNAASIAGLR---PLRLIHDCTATALGYG 182 (708)
Q Consensus 151 ~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~ 182 (708)
.-.+.+.+|....|++ ++.++|+.+|..++.+
T Consensus 169 dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~ 203 (206)
T PF00349_consen 169 DVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGA 203 (206)
T ss_dssp BHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHH
T ss_pred ccchhHHHHHHHhcccCcceEEEEECCHHHhhhhh
Confidence 3456677777777765 6789999999887654
No 223
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.53 E-value=3.8e+02 Score=31.42 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcC-----------CCCcCHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHH
Q 005222 622 FASDQEREGISRSLQETEEWLYDD-----------GDDETANTYASKLEDLKKLVDPIENRYKDGEARAQA 681 (708)
Q Consensus 622 ~~~~~e~~~l~~~l~e~~~WL~~~-----------~~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~~ 681 (708)
.++..+++.|.+.+.++-.|+.+. ......+++.+|...|...+.-...|+.-..-|++.
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~~~~~~k 844 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIRKPRKQK 844 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhccCccccc
Confidence 477888999999999999999985 123456888888888888888777777766666543
No 224
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=30.02 E-value=6.8e+02 Score=26.38 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=58.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHHH-HHhccccccCCCCCCceEEEEEEeCCcceEEEEEEEeCCe
Q 005222 139 DCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTAT-ALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIVSFEAGH 217 (708)
Q Consensus 139 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aa-al~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~ 217 (708)
-..+|-|.--.+..|.-+.+..-. -+++..|.----|+ ||+........ .+..-.-+|+|-|-|-|-|-.+. .|.
T Consensus 108 ~fLlteppln~penreytaeImfE-sfnvpglyiAVqavLALaaswts~~v-~er~ltG~VidsGdgvThvipva--Egy 183 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYIAVQAVLALAASWTSRQV-GERFLTGIVIDSGDGVTHVIPVA--EGY 183 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhh-hccCchHHHHHHHHHHHHHHHHHhhh-hhheeeeEEEecCCCeeEEEEee--cce
Confidence 467899988888888877665322 24444432111111 22222222221 12234568999999988876654 333
Q ss_pred EEEEEEeCCCCcchHHHHHHHHHHHH
Q 005222 218 MKVLSHAFDSSLGGRDFDDVLFGYFA 243 (708)
Q Consensus 218 ~~v~~~~~~~~lGG~~id~~l~~~l~ 243 (708)
+ +.++-...++.|++++.-+...+.
T Consensus 184 V-igScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 184 V-IGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred E-EeeeeccccccCCchhHHHHHHhh
Confidence 2 444345788999999887766664
No 225
>PRK13324 pantothenate kinase; Reviewed
Probab=29.98 E-value=53 Score=33.46 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.5
Q ss_pred EEEEEccccceEEEEEeCCc
Q 005222 3 VVGFDIGNENCVIATVKHRG 22 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (708)
++.||.|+|+++.+++.+++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999987543
No 226
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=29.76 E-value=1.4e+02 Score=27.99 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=50.7
Q ss_pred ecHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCHHH----------------HHHHHHHHHHcCCcceeeecchH
Q 005222 112 FCPVQVMGMLFSHLKDVAEKNLEMPVVDCVIGVPSYFTDLQ----------------RREYLNAASIAGLRPLRLIHDCT 175 (708)
Q Consensus 112 ~~~~el~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~q----------------r~~l~~Aa~~AGl~~~~li~Ep~ 175 (708)
.++++++..+...+.+.....- .. .+.|++|...+... .+.+.+. .++ .+.+.|+..
T Consensus 30 ~~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~~---~~~-pv~i~Nd~~ 102 (179)
T PF00480_consen 30 TSPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEER---FGV-PVIIENDAN 102 (179)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHHH---HTS-EEEEEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhcc---cce-EEEEecCCC
Confidence 3456666666666655544432 11 55555655444322 2233332 355 457899999
Q ss_pred HHHHhccccccCCCCCCceEEEEEEeCCcceEEEEE
Q 005222 176 ATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (708)
Q Consensus 176 Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~ 211 (708)
|+|++....... .....++++-+|.| .-.+++
T Consensus 103 ~~a~ae~~~~~~---~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 103 AAALAEYWFGAA---KDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHHSTT---TTTSSEEEEEESSS-EEEEEE
T ss_pred cceeehhhcCcc---CCcceEEEEEeecC-CCccee
Confidence 999887654321 23467888888876 555554
No 227
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.65 E-value=5.9e+02 Score=30.57 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHh-hcchhHHHHHHHhhhHHHHHHHHHHHh
Q 005222 571 GMTKPELALAQETENLLA-QQDITMEQTKDKKNALESYVYEMRNKL 615 (708)
Q Consensus 571 ~ls~~e~~~~~~~~~~~~-~~D~~~~~~~~a~N~LEs~iy~~r~~l 615 (708)
+|+++-+++.++.+.... .-++...++++.+.++|...-.++..+
T Consensus 493 Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~ 538 (771)
T TIGR01069 493 GIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLL 538 (771)
T ss_pred CcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888887777665443 234444444444444444444444433
No 228
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=29.28 E-value=5.3e+02 Score=24.90 Aligned_cols=98 Identities=16% Similarity=0.164 Sum_probs=58.8
Q ss_pred hcchhHHHHHHHhhhHHHHH-HHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHH
Q 005222 589 QQDITMEQTKDKKNALESYV-YEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDP 667 (708)
Q Consensus 589 ~~D~~~~~~~~a~N~LEs~i-y~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~p 667 (708)
.+|..+.-...-.|-+||.+ |.||..|.- +++++.+.......+ ..+.++..++.+++....-
T Consensus 154 vRDEIrMt~aAYqtlyeSsvAfGmRKALqa-------e~ek~~~~~~~k~le---------~~k~~Le~~ia~~k~K~e~ 217 (259)
T KOG4001|consen 154 VRDEIRMTFAAYQTLYESSVAFGMRKALQA-------ENEKTRATTEWKVLE---------DKKKELELKIAQLKKKLET 217 (259)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 34655555555667778876 999999853 233333333332221 1356677777777766655
Q ss_pred HHHH-----HHhhhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 005222 668 IENR-----YKDGEARAQATRDLLQCIVEYRTAVGSLPPE 702 (708)
Q Consensus 668 i~~R-----~~e~~~rp~~~~~l~~~l~~~~~~~~~~~~~ 702 (708)
-..| ..+-+...+-++-|+..-..++..++++-+.
T Consensus 218 ~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLegI~ap 257 (259)
T KOG4001|consen 218 DEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLEGILAP 257 (259)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4433 3334445566777777777778777776543
No 229
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=29.18 E-value=4.9e+02 Score=24.43 Aligned_cols=148 Identities=14% Similarity=0.101 Sum_probs=75.6
Q ss_pred EEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhh
Q 005222 195 YIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKV 274 (708)
Q Consensus 195 ~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~ 274 (708)
.+|-+|-|-..|-.++++..++.+.++..+--..-+...+-++|. ...+.+...
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~~~~~~~~Rl~--------------------------~I~~~l~~~ 56 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTPSDLDLPERLK--------------------------QIYDGLSEL 56 (164)
T ss_pred EEEEEccccCceeEEEEEecCCeEEEEEeeEEECCCCCCHHHHHH--------------------------HHHHHHHHH
Confidence 588899999999999999887666666554211111112222222 222222222
Q ss_pred cCCCCeeeEEeccccCCcceEEEeCHHHHHHHhhhhhHHHHHHHHHHHHHcCCC-----CCCccEEEEec-CCCChHHHH
Q 005222 275 LSANAEAPLNIECLMDEKDVRGFIKREEFEELASGLTEKIAIPCRKALADAGLH-----VDKIHSVEIVG-SGSRIPAIT 348 (708)
Q Consensus 275 Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~-----~~~i~~ViLvG-G~srip~v~ 348 (708)
+.......+.+|.++-+... ... -.+.+....+..++...+++ +..++..+ +| |.+.=--|+
T Consensus 57 i~~~~Pd~vaiE~~f~~~n~---------~sa--~~l~~arGvi~la~~~~~ipv~ey~P~~VKk~v-tG~G~A~K~qV~ 124 (164)
T PRK00039 57 IDEYQPDEVAIEEVFFNKNP---------QSA--LKLGQARGVAILAAAQRGLPVAEYTPLQVKKAV-VGYGRADKEQVQ 124 (164)
T ss_pred HHHhCCCEEEEehhhhccCh---------HHH--HHHHHHHHHHHHHHHHcCCCEEEECHHHhhhhh-cCCCCCCHHHHH
Confidence 22112223444443211111 111 12223444555566665554 33344433 44 555556788
Q ss_pred HHHHhHhCCCCCCCCCchhhHhchHHHHHHHhC
Q 005222 349 RLLTSLFGREPRRSLNASECVARGCALQCAMLS 381 (708)
Q Consensus 349 ~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~ 381 (708)
.+++..++.+- .+.+.|+|=|++.|+..+...
T Consensus 125 ~mv~~~l~l~~-~~~~~D~aDAlAiA~~h~~~~ 156 (164)
T PRK00039 125 HMVKRLLNLPE-IPKPDDAADALAIAICHAHRR 156 (164)
T ss_pred HHHHHHhCCCC-CCCCCCHHHHHHHHHHHHhhc
Confidence 99999998543 223347777777777666543
No 230
>PLN02192 3-ketoacyl-CoA synthase
Probab=27.95 E-value=1.6e+02 Score=33.27 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=41.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecC-CCChHHHHHHHHhHhCCC
Q 005222 303 FEELASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGS-GSRIPAITRLLTSLFGRE 358 (708)
Q Consensus 303 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG-~srip~v~~~l~~~fg~~ 358 (708)
+++..++...-+...++++|+++|+++++||.|++... ....|.+-.+|.+.+|..
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 44444444455667788999999999999998875532 235899999999999854
No 231
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.88 E-value=72 Score=33.69 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhhhHH
Q 005222 634 SLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEAR 678 (708)
Q Consensus 634 ~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~r 678 (708)
.|+++++||.++ +. +++.+.+++.+-++.+.||.-++.|+-.-
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~t 51 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEFIQT 51 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 578888899854 33 88888999999998888888888776543
No 232
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=27.51 E-value=2e+02 Score=23.96 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHH
Q 005222 624 SDQEREGISRSLQETEEWLYDDGDDETANTYAS 656 (708)
Q Consensus 624 ~~~e~~~l~~~l~e~~~WL~~~~~~a~~~~~~~ 656 (708)
-|+-+..|.+.+.++++||.........+++++
T Consensus 57 ipd~~~RL~~a~~~L~~~l~~~~~~ee~~~ake 89 (90)
T PF02970_consen 57 IPDCQQRLEKAVEDLEEFLEEEEGLEELEEAKE 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCcCchhHHHHhh
Confidence 366677888889999999987655555555543
No 233
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=26.91 E-value=1.3e+02 Score=32.65 Aligned_cols=46 Identities=4% Similarity=-0.034 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-ChHHHHHHHHhHhC
Q 005222 308 SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGS-RIPAITRLLTSLFG 356 (708)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-rip~v~~~l~~~fg 356 (708)
+-++.++.+.|-...... ...+|.|+++||-+ ..+.|++.|.+.++
T Consensus 303 d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 303 DVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 344555555555544433 12699999999999 99999999998874
No 234
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.88 E-value=6.6e+02 Score=31.13 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=14.3
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHhh
Q 005222 592 ITMEQTKDKKNALESYVYEMRNKLF 616 (708)
Q Consensus 592 ~~~~~~~~a~N~LEs~iy~~r~~l~ 616 (708)
.-+.+.+++..+|+.+|-++|+.|.
T Consensus 1461 as~~q~~~s~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1461 ASRSQMEESNRELRNLIQQVRDFLT 1485 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444555566666666666664
No 235
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=26.87 E-value=42 Score=36.88 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=33.0
Q ss_pred HHHHHHHHHHH-----HcCCcc------eeeecchHHHHHhccccccCCCCCCc-eEEEEEEeCCcceEEEEE
Q 005222 151 LQRREYLNAAS-----IAGLRP------LRLIHDCTATALGYGIYKTDFANGGK-SYIAFVDIGHSDTQVSIV 211 (708)
Q Consensus 151 ~qr~~l~~Aa~-----~AGl~~------~~li~Ep~Aaal~y~~~~~~~~~~~~-~~vlv~D~Gggt~dvsv~ 211 (708)
..|+++++... .=|++. ..+++-|.|+..+.-+-........+ ..+|++|+||-|||+--+
T Consensus 194 paR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv 266 (463)
T TIGR01319 194 AAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSA 266 (463)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhc
Confidence 45777777632 125542 34566666664332211111111112 359999999999997544
No 236
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=26.76 E-value=4.1e+02 Score=22.81 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 005222 625 DQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVEYRTAVGSL 699 (708)
Q Consensus 625 ~~e~~~l~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~~ 699 (708)
++-..+|..+++++++-|..-+ +...+++.+-...+.+.......|+.... ....+..+..+..+..++...
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg-~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~--d~v~~~sk~a~~~tD~yV~e~ 82 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSG-SLAGDEAEELRSKAESALKEARDRLGDTG--DAVVQRSKAAADATDDYVREN 82 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHcC
Confidence 4445778888888888888876 34445666666666666777777666654 445556666666666555443
No 237
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=26.35 E-value=69 Score=34.78 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=24.7
Q ss_pred CceEEEEEEeCCcceEEEEEEEe-CCeEEEE
Q 005222 192 GKSYIAFVDIGHSDTQVSIVSFE-AGHMKVL 221 (708)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsv~~~~-~~~~~v~ 221 (708)
....+|++|+||..+-++++++. +|.+.+-
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 56789999999999999999998 4555443
No 238
>PRK06840 hypothetical protein; Validated
Probab=26.32 E-value=1.9e+02 Score=30.56 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCccEEEEecCCC---ChHHHHHHHHhHhCC
Q 005222 310 LTEKIAIPCRKALADAGLHVDKIHSVEIVGSGS---RIPAITRLLTSLFGR 357 (708)
Q Consensus 310 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s---rip~v~~~l~~~fg~ 357 (708)
..+-....++++|+++++++++|+.|+.++-.. ..|.....|...+|.
T Consensus 53 ~~~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lGl 103 (339)
T PRK06840 53 TSDMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGA 103 (339)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhCC
Confidence 344455678899999999999999998765322 367767778888874
No 239
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=25.41 E-value=1.7e+02 Score=23.17 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhc
Q 005222 623 ASDQEREGISRSLQETEEWLYD 644 (708)
Q Consensus 623 ~~~~e~~~l~~~l~e~~~WL~~ 644 (708)
++.+|++.|..+++.+.+=|+.
T Consensus 3 Vt~~EkeQLS~AID~mnEGLD~ 24 (84)
T PF11458_consen 3 VTDQEKEQLSTAIDRMNEGLDT 24 (84)
T ss_pred CchHHHHHHHHHHHHHHhhHHH
Confidence 5778899999988888776543
No 240
>PF13941 MutL: MutL protein
Probab=25.33 E-value=1.6e+02 Score=32.76 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=33.0
Q ss_pred EEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchH-HHHHHHHHHH
Q 005222 196 IAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGR-DFDDVLFGYF 242 (708)
Q Consensus 196 vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~-~id~~l~~~l 242 (708)
+|++|||+.+|-++++....+..++++.+....-=.. |+...+.+-+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 7999999999999999977777788877633332222 5555554443
No 241
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=25.11 E-value=4.4e+02 Score=22.62 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhh--cchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q 005222 575 PELALAQETENLLAQ--QDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDD 648 (708)
Q Consensus 575 ~e~~~~~~~~~~~~~--~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~~ 648 (708)
.|++.+...++++-. -+....+..++|-.+|+.+-++|+.+.+ ....-.+.-+.++..+.+...++.|.
T Consensus 15 ~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~-----~~d~v~~~sk~a~~~tD~yV~e~PWq 85 (104)
T COG4575 15 AELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGD-----TGDAVVQRSKAAADATDDYVRENPWQ 85 (104)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHcCCch
Confidence 456666666666654 3666777888999999999999999975 23455677788888899988887654
No 242
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=24.28 E-value=64 Score=36.09 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=15.8
Q ss_pred EEEEEccccceEEEEEe
Q 005222 3 VVGFDIGNENCVIATVK 19 (708)
Q Consensus 3 vvGID~GTt~s~va~~~ 19 (708)
++|||.|||.+++++++
T Consensus 8 ~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 8 VLGIDVGTTSARALVFN 24 (516)
T ss_pred EEEEEcCCCceEEEEEe
Confidence 68999999999999986
No 243
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=24.18 E-value=11 Score=35.24 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=15.4
Q ss_pred EEEEEccccceEEEEEeC
Q 005222 3 VVGFDIGNENCVIATVKH 20 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~ 20 (708)
++|+|+||+|++++...+
T Consensus 59 ~~g~~~gt~n~~~~~~e~ 76 (213)
T PLN00130 59 ILGTGLGTNNAIREEREK 76 (213)
T ss_pred eeccCCCcchHHHHHHhc
Confidence 799999999999887653
No 244
>PRK09698 D-allose kinase; Provisional
Probab=24.08 E-value=1.8e+02 Score=30.21 Aligned_cols=43 Identities=7% Similarity=-0.081 Sum_probs=27.7
Q ss_pred cCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceEEEEE
Q 005222 163 AGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQVSIV 211 (708)
Q Consensus 163 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsv~ 211 (708)
.|++ +.+.|+..|+|++-..... ....+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~----~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENN----LTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcC----CCCceEEEEEecCc-eEEEEE
Confidence 4775 6799999998876433221 22357888888866 444444
No 245
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=23.99 E-value=1.2e+02 Score=28.34 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=24.5
Q ss_pred CeEEEEEccccc-eEEEEEeCCceEEEeCCCC
Q 005222 1 MSVVGFDIGNEN-CVIATVKHRGVDVLLNEES 31 (708)
Q Consensus 1 M~vvGID~GTt~-s~va~~~~~~~~ii~~~~g 31 (708)
|.+.|||+|--. +++|++.++..+++.....
T Consensus 1 mmy~GIDla~k~~tavavl~~~~~~~i~~~s~ 32 (178)
T COG2410 1 MMYAGIDLAVKRSTAVAVLIEGRIEIISAWSS 32 (178)
T ss_pred CcccccccccCCCceEEEEECCEEEEEEcccc
Confidence 788999998765 4688889999888865544
No 246
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=23.94 E-value=38 Score=37.67 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.7
Q ss_pred HHHhhhHHHHHHHHHHHhh
Q 005222 598 KDKKNALESYVYEMRNKLF 616 (708)
Q Consensus 598 ~~a~N~LEs~iy~~r~~l~ 616 (708)
+-.|--+|+..|.+|..++
T Consensus 360 ~l~RAv~Egva~~~r~~~e 378 (454)
T TIGR02627 360 ELARCIFDSLALLYRQVLL 378 (454)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3477889999999999885
No 247
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=23.60 E-value=1.2e+02 Score=33.08 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=30.2
Q ss_pred cceEEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHH-HHHhcccc
Q 005222 137 VVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTA-TALGYGIY 184 (708)
Q Consensus 137 ~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aal~y~~~ 184 (708)
+.++|++.|+.-+..---.+.-||.++|.+.+.-+--.-| ||++||..
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTe 185 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTE 185 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--S
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCC
Confidence 6789999998875555678899999999999888888777 46899853
No 248
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.57 E-value=6.7e+02 Score=24.13 Aligned_cols=48 Identities=10% Similarity=0.204 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhcC
Q 005222 651 ANTYASKLEDLKKLVDPIENRYKD-----GEARAQATRDLLQCIVEYRTAVGS 698 (708)
Q Consensus 651 ~~~~~~kl~~L~~~~~pi~~R~~e-----~~~rp~~~~~l~~~l~~~~~~~~~ 698 (708)
.+++..++.+|+.....+..|..+ .+.+..-++.|+...++.+..++.
T Consensus 136 ~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 136 KEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777788887777777766654 444566777777777777766553
No 249
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=23.51 E-value=3.3e+02 Score=30.20 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=33.7
Q ss_pred EEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHHHHHHh
Q 005222 199 VDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAAKFKEQ 249 (708)
Q Consensus 199 ~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 249 (708)
+|||+.+|-++++...++.+..++.+.....= .|+..-+++...++++.+
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt~-~dv~~G~~~~a~~~l~~~ 50 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIES-DHLAGGFFNKANEKLNED 50 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccch-hhhhcchHHHHHHHHHHh
Confidence 59999999999998888877777776552222 366555445555555443
No 250
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.34 E-value=4.2e+02 Score=21.92 Aligned_cols=52 Identities=27% Similarity=0.324 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhhh---h-hccCCCHHHHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHHHH
Q 005222 603 ALESYVYEMRNKLFS---T-YRSFASDQEREGISRSLQETEEWLYDDGDDETANTYASKLEDLKK 663 (708)
Q Consensus 603 ~LEs~iy~~r~~l~~---~-~~~~~~~~e~~~l~~~l~e~~~WL~~~~~~a~~~~~~~kl~~L~~ 663 (708)
.+|.-+-++|+.|+. . ...-.+++.|..+.+.+..+.+-|.. |+++|+.|++
T Consensus 9 ~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~---------~E~eL~~Lrk 64 (85)
T PF15188_consen 9 GLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLEN---------NEKELKLLRK 64 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhc---------cHHHHHHHHH
Confidence 345555555665543 1 34678999999999888888877754 4667777765
No 251
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.22 E-value=1.1e+03 Score=27.61 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=65.7
Q ss_pred HHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCC----CCcCHHHHHH
Q 005222 581 QETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDG----DDETANTYAS 656 (708)
Q Consensus 581 ~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~----~~a~~~~~~~ 656 (708)
........+.+....++.+.+....+..|.++...+.+-....-.++...+.......++|-.+-. -..+...+++
T Consensus 203 ~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~Lqe 282 (716)
T KOG4593|consen 203 QEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQE 282 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 334445555666667777777788888888877654321111223666777777777777877532 2345555666
Q ss_pred HHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005222 657 KLEDLKKLVDPIENRYKDGEARAQATRDLLQCIVE 691 (708)
Q Consensus 657 kl~~L~~~~~pi~~R~~e~~~rp~~~~~l~~~l~~ 691 (708)
.+..|+........-...+....---.+|+..|++
T Consensus 283 E~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~r 317 (716)
T KOG4593|consen 283 ELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQR 317 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666666655555444555555555555555554
No 252
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=23.13 E-value=2.2e+02 Score=31.65 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCcc--EEEEecCCCChHHHHHHHHhHh---CCCC--CCCCCchhhHhchHHHHHHHhCCCc
Q 005222 312 EKIAIPCRKALADAGLHVDKIH--SVEIVGSGSRIPAITRLLTSLF---GREP--RRSLNASECVARGCALQCAMLSPAF 384 (708)
Q Consensus 312 ~~i~~~i~~~l~~~~~~~~~i~--~ViLvGG~srip~v~~~l~~~f---g~~v--~~~~n~~eava~GAa~~a~~~~~~~ 384 (708)
+.+...|++..+.||+.+++|+ .++++|..+++--+++.++..= |.-+ ...++.+.-++ |-|--++.++. .
T Consensus 66 ~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E 143 (475)
T PRK10719 66 AAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E 143 (475)
T ss_pred HHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h
Confidence 5677788899999999999884 8999999999999999998732 2222 12333333333 44444455554 3
Q ss_pred cccceEEeec
Q 005222 385 RVREYEVQDC 394 (708)
Q Consensus 385 ~~~~~~~~d~ 394 (708)
+-..+.+.|+
T Consensus 144 ke~gVa~IDI 153 (475)
T PRK10719 144 RNTRVLNIDI 153 (475)
T ss_pred ccCceEEEEe
Confidence 3344555554
No 253
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.95 E-value=83 Score=31.44 Aligned_cols=53 Identities=19% Similarity=0.124 Sum_probs=35.7
Q ss_pred CCCccEEEEecCCCChHH---HHHHHHhHhCCCCCCCCCchhhHhchHHHHHHHhCCC
Q 005222 329 VDKIHSVEIVGSGSRIPA---ITRLLTSLFGREPRRSLNASECVARGCALQCAMLSPA 383 (708)
Q Consensus 329 ~~~i~~ViLvGG~srip~---v~~~l~~~fg~~v~~~~n~~eava~GAa~~a~~~~~~ 383 (708)
..+.+.|+|.|--+-+.. |++.|..+.-..+ ..-|-++.+.|+|+.|.-.+..
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k~--~~l~~esaaiG~a~IA~DI~~G 321 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNKV--AVLPPESAAIGLALIARDIASG 321 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHHHHH--hhcCchhhhhhhHHHHHHHHcC
Confidence 446788999997666655 7777776653222 1234566899999999866543
No 254
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=22.81 E-value=47 Score=37.17 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=15.1
Q ss_pred EEEEccccceEEEEEeC
Q 005222 4 VGFDIGNENCVIATVKH 20 (708)
Q Consensus 4 vGID~GTt~s~va~~~~ 20 (708)
||||+||+++++++++.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999998763
No 255
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=22.77 E-value=6.9e+02 Score=24.00 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhc-cCCCHHHHHHHHHHHHHH
Q 005222 570 GGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYR-SFASDQEREGISRSLQET 638 (708)
Q Consensus 570 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~-~~~~~~e~~~l~~~l~e~ 638 (708)
|+||.|-..++.+.+..+.++ +|-.+-..--+..+.|....+ .-+++++...+.+.++++
T Consensus 105 P~lTeErRkelvK~~k~~~Ee---------akvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~iQKl 165 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEE---------AKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKL 165 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 689999998888887776532 222222222222233322222 337888888887777766
No 256
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.72 E-value=7.4e+02 Score=28.41 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhhcCCCCcCHH
Q 005222 573 TKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLYDDGDDETAN 652 (708)
Q Consensus 573 s~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~~~~~~a~~~ 652 (708)
|.++.+++...+.++.+.=..+.+...-++++++|--+++..- ..++-++.+..+..+.++++..=+.. .++
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~---~~~ik~p~~i~~~~~e~d~lk~e~~~-----~~~ 233 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIK---KKDIKNPLELQKIKEEFDKLKKEGKA-----DKQ 233 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 3344444444444433322222222222445555433332222 12444566555555555555444322 233
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhHHH
Q 005222 653 TYASKLEDLKKLVDPIENRYKDGEARA 679 (708)
Q Consensus 653 ~~~~kl~~L~~~~~pi~~R~~e~~~rp 679 (708)
.++.-.++|++-..-+...+.+-++-|
T Consensus 234 ~i~~~~~~l~~~~~~~~~~~~~lk~ap 260 (555)
T TIGR03545 234 KIKSAKNDLQNDKKQLKADLAELKKAP 260 (555)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 344444444444444444444444444
No 257
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=22.51 E-value=3.5e+02 Score=28.14 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=34.5
Q ss_pred CceEEEEEEeCCcceEEEEEEEeCCeEEEEEEeCCCCcchHHHHHHHHHHHHH
Q 005222 192 GKSYIAFVDIGHSDTQVSIVSFEAGHMKVLSHAFDSSLGGRDFDDVLFGYFAA 244 (708)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 244 (708)
...+++-+|+|+.++.++++......+..........-....+-+.|.+.+.+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~ 56 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAE 56 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHH
Confidence 45789999999999999999887665444433323333334555555555543
No 258
>PRK14878 UGMP family protein; Provisional
Probab=22.50 E-value=2e+02 Score=30.41 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHH------HHHHhHhCCCCCCCCCchhhHhc
Q 005222 308 SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAIT------RLLTSLFGREPRRSLNASECVAR 371 (708)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~------~~l~~~fg~~v~~~~n~~eava~ 371 (708)
....+.+...++++|++++++..+|+.|.++-|-...+.++ +.|...++.++ ..++-.++=+.
T Consensus 42 ~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p~-~~v~h~~~Ha~ 110 (323)
T PRK14878 42 QHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKYNKPL-VPVNHCIAHIE 110 (323)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHHHHHHHHHHhCCCc-cccchHHHHHH
Confidence 34567788899999999999999999999998766666665 44445556654 44555555444
No 259
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=22.49 E-value=2e+02 Score=30.32 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=44.1
Q ss_pred hhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHH------HHHHhHhCCCCCCCCCchhhHhc
Q 005222 308 SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAIT------RLLTSLFGREPRRSLNASECVAR 371 (708)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~------~~l~~~fg~~v~~~~n~~eava~ 371 (708)
....+.+...++++|+++++++.+|+.|.+..|=...++++ +.|...++.++ ..++-.+|=+.
T Consensus 43 ~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~vg~~~ak~la~~~~~p~-~~v~h~~aHa~ 111 (322)
T TIGR03722 43 EHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLRVGATAARALALKLNKPL-VGVNHCVAHIE 111 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHHHHHHHHHHHHHHhCCCe-echhhHHHHHH
Confidence 34566788889999999999999999999998876666665 33444455543 34454444443
No 260
>PRK09604 UGMP family protein; Validated
Probab=22.29 E-value=1.8e+02 Score=30.91 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHH------HHhHhCCCCCCCCCchhhHhchH
Q 005222 308 SGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRL------LTSLFGREPRRSLNASECVARGC 373 (708)
Q Consensus 308 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~------l~~~fg~~v~~~~n~~eava~GA 373 (708)
....+.+...++++|+++++++.+|+.|.++.|=...+.++-- |...++.++ ..++-.++-|..|
T Consensus 49 ~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~~Ak~La~~~~ipl-~~v~h~~~ha~~a 119 (332)
T PRK09604 49 RAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALALNKPL-IGVNHLEGHLLAP 119 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHHHHHHHHHHhCCCE-EeecCHHHHHHhh
Confidence 3456678888999999999999999999999998888887643 334445543 4456666666543
No 261
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=22.16 E-value=6.5e+02 Score=23.49 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=46.5
Q ss_pred CCCcCceEEEEeeeccceEEEEEEe----------CCCCCCC-------CCCccceeEEeCCCCCCCCC-cceeEEEEEE
Q 005222 422 GQPIPCVKVLTLQRSSLFHLELFYT----------NPNELPP-------GISSKVSCFTIGPFQGSNSE-NAKVKVTVKL 483 (708)
Q Consensus 422 ~~~~P~~k~~~~~~~~~~~i~~~~~----------~~~~~~~-------~~~~~ig~~~i~~i~~~~~~-~~~i~v~~~l 483 (708)
|.++...+++.+.+...+.+.+..- +|..++. ....+-|.|.-.|+++...| -..|.|.+.+
T Consensus 29 G~RF~q~RTiKl~tdskYkv~V~~kP~~~~~~~~igg~~~~l~~ks~d~~~~vYs~~~~T~G~~~TKsG~Rq~i~i~~~f 108 (161)
T PF15043_consen 29 GQRFGQNRTIKLLTDSKYKVDVTIKPPTVETSLSIGGVSLPLEEKSRDEQSVVYSGQYDTEGVPPTKSGERQPIQISMQF 108 (161)
T ss_pred ccccCCceEEEEecCCEEEEEEEEcCCcceeeeEecceeeceeecccCCCeeEEEEEeecCCCCcccCCccccEEEEEEe
Confidence 7777777888877655544433321 1222222 12456788888899987554 3579999999
Q ss_pred cCCeeEEEE
Q 005222 484 NLHGIVSVE 492 (708)
Q Consensus 484 d~~G~l~v~ 492 (708)
+..|.+.+.
T Consensus 109 ~~~g~~~~~ 117 (161)
T PF15043_consen 109 NPGGTLETV 117 (161)
T ss_pred cCcceEEEE
Confidence 999988755
No 262
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=22.14 E-value=1.8e+02 Score=29.39 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=32.0
Q ss_pred CccEEEEecCCCChHHHHHHHHhHhCCCCCCCCCchhhHhchHH
Q 005222 331 KIHSVEIVGSGSRIPAITRLLTSLFGREPRRSLNASECVARGCA 374 (708)
Q Consensus 331 ~i~~ViLvGG~srip~v~~~l~~~fg~~v~~~~n~~eava~GAa 374 (708)
.++.| +=|+|..|++.+.+++.+|.++ .-+||.+++|.=+.
T Consensus 172 ~~d~l--ILGCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTV--VLGCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEE--EECcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 45665 4499999999999999998655 46788888777554
No 263
>PRK11415 hypothetical protein; Provisional
Probab=21.94 E-value=4.2e+02 Score=21.18 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHhh
Q 005222 579 LAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFSTYRSFASDQEREGISRSLQETEEWLY 643 (708)
Q Consensus 579 ~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~~~WL~ 643 (708)
++.+.+..+...|...+.+.+..+.|+.-|..+.... ..+++.+...++..==...++|+
T Consensus 4 e~~d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~~-----~~~~d~~i~~LKk~KL~LKDeI~ 63 (74)
T PRK11415 4 EYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSD-----GRGYNAEVVRMKKQKLQLKDEML 63 (74)
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHhHHHHH
Confidence 3567788899999999999999999999888766543 12345556666555444455544
No 264
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=21.88 E-value=7.2e+02 Score=31.18 Aligned_cols=46 Identities=11% Similarity=0.012 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhh
Q 005222 571 GMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLF 616 (708)
Q Consensus 571 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~ 616 (708)
.+++.++..+.+........+..+....+-...++..++.++..+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~ 196 (1179)
T TIGR02168 151 EAKPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILN 196 (1179)
T ss_pred cCCHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666655555444444444444444444555555443
No 265
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=21.76 E-value=83 Score=31.72 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.7
Q ss_pred EEEEccccceEEEEEeCCc
Q 005222 4 VGFDIGNENCVIATVKHRG 22 (708)
Q Consensus 4 vGID~GTt~s~va~~~~~~ 22 (708)
+.||+|+|+++++++.+++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6799999999999998654
No 266
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=21.68 E-value=2.3e+02 Score=29.64 Aligned_cols=66 Identities=11% Similarity=0.007 Sum_probs=48.7
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHH------HHHhHhCCCCCCCCCchhhHhchH
Q 005222 307 ASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITR------LLTSLFGREPRRSLNASECVARGC 373 (708)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~------~l~~~fg~~v~~~~n~~eava~GA 373 (708)
.....+.+...++++|+++++++.+|+.|.++-|=...+.++- .|...++.++ ..++-.++-+.-|
T Consensus 45 ~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~~Ak~la~~~~~p~-~~v~hl~~ha~~a 116 (305)
T TIGR00329 45 SRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPL-IGVNHLLGHIYAP 116 (305)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHHHHHHHHHHhCCCE-eecccHHHHHHHh
Confidence 3456778888999999999999999999999999888888873 3334445554 4456666655433
No 267
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=21.31 E-value=1.9e+02 Score=31.27 Aligned_cols=48 Identities=27% Similarity=0.333 Sum_probs=36.6
Q ss_pred cceEEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHH-HHHhcccc
Q 005222 137 VVDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTA-TALGYGIY 184 (708)
Q Consensus 137 ~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aal~y~~~ 184 (708)
+.++|++.|+.=+..--..++-||.++|.+.+..+--.-| ||++||..
T Consensus 123 V~~Iv~~TPp~~~g~i~p~iL~aa~~~Gv~eiy~vGGaQAIAAlAyGTe 171 (390)
T cd06572 123 VKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTE 171 (390)
T ss_pred CCeEEEEeCcCCCCCCCHHHHHHHHHcCCcEEeccCCHHHHHHHHcCCc
Confidence 6789999998432223356788999999998888888777 57889853
No 268
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=21.28 E-value=7.2e+02 Score=23.67 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhHHHHHHHHHHHhhh-hhccCCCHHHHHHHHHHHHHH
Q 005222 570 GGMTKPELALAQETENLLAQQDITMEQTKDKKNALESYVYEMRNKLFS-TYRSFASDQEREGISRSLQET 638 (708)
Q Consensus 570 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~LEs~iy~~r~~l~~-~~~~~~~~~e~~~l~~~l~e~ 638 (708)
|+||.|-..++.+.+..+. +++|..+=..-.++.+.|.. .....+++++...+.+.++++
T Consensus 99 P~lT~E~R~~lvK~~k~~~---------E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkl 159 (179)
T cd00520 99 PPLTEERRKELVKDAKKIA---------EEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKL 159 (179)
T ss_pred CCCCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHH
Confidence 6899999999988877764 33444333333333344432 122346777776666666654
No 269
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=21.13 E-value=5.9e+02 Score=29.06 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=41.9
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHHcCCcceeeecchHHHHHhccccccCCCCCCceEEEEEEeCCcceE
Q 005222 138 VDCVIGVPSYFTDLQRREYLNAASIAGLRPLRLIHDCTATALGYGIYKTDFANGGKSYIAFVDIGHSDTQ 207 (708)
Q Consensus 138 ~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~d 207 (708)
.+.|+++|... -..+.+++...|++.+..-+|..|+..+-+..+.. ..-.++++=.|-|.+.
T Consensus 18 V~~vFGvpG~~----~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~t----g~~gv~~~t~GPG~~N 79 (554)
T TIGR03254 18 INTIYGVVGIP----VTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLT----QKPGVCLTVSAPGFLN 79 (554)
T ss_pred CCEEEeCCCcc----hhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHh----CCCEEEEEccCccHHh
Confidence 36899999852 23455666667899999999999987666555431 1234556666766655
No 270
>PLN00415 3-ketoacyl-CoA synthase
Probab=20.96 E-value=2.2e+02 Score=31.65 Aligned_cols=45 Identities=9% Similarity=0.136 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEecCC-CChHHHHHHHHhHhCCC
Q 005222 314 IAIPCRKALADAGLHVDKIHSVEIVGSG-SRIPAITRLLTSLFGRE 358 (708)
Q Consensus 314 i~~~i~~~l~~~~~~~~~i~~ViLvGG~-srip~v~~~l~~~fg~~ 358 (708)
+...++++|+++|+++++|+.|++.+.. ...|.+-.+|...+|.+
T Consensus 138 i~~A~~~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LGLr 183 (466)
T PLN00415 138 IFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLK 183 (466)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhCCC
Confidence 4446778899999999999988755432 24899999999999854
No 271
>PLN02914 hexokinase
Probab=20.93 E-value=2.4e+02 Score=31.64 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.4
Q ss_pred CceEEEEEEeCCcceEEEEEEEeC
Q 005222 192 GKSYIAFVDIGHSDTQVSIVSFEA 215 (708)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsv~~~~~ 215 (708)
+...+|.+|+||.++-|..+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 355799999999999999999986
No 272
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=20.88 E-value=4.5e+02 Score=26.02 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEecCCCC--hHHHHHHHHhHhCC
Q 005222 314 IAIPCRKALADAGLHVDKIHSVEIVGSGSR--IPAITRLLTSLFGR 357 (708)
Q Consensus 314 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr--ip~v~~~l~~~fg~ 357 (708)
....++++|+++++++++|+.|++...... .|.....|...+|.
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 455678899999999999999987765444 68888889999985
No 273
>PLN02596 hexokinase-like
Probab=20.82 E-value=3.6e+02 Score=30.32 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=21.9
Q ss_pred CceEEEEEEeCCcceEEEEEEEeCC
Q 005222 192 GKSYIAFVDIGHSDTQVSIVSFEAG 216 (708)
Q Consensus 192 ~~~~vlv~D~Gggt~dvsv~~~~~~ 216 (708)
+...+|.+|+||.++-|..+++.++
T Consensus 94 E~G~yLAlDlGGTNfRV~~V~L~g~ 118 (490)
T PLN02596 94 EKGLYYGLNLRGSNFLLLRARLGGK 118 (490)
T ss_pred cceEEEEEeeCCceEEEEEEEEcCC
Confidence 4567899999999999999999864
No 274
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=20.40 E-value=5.6e+02 Score=22.44 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhhhhcCCCCeeeEEeccccCCcceEEEeCHHHHHHHhh---hhhHH
Q 005222 237 VLFGYFAAKFKEQYKINVYSNVRACIRLRAACEKLKKVLSANAEAPLNIECLMDEKDVRGFIKREEFEELAS---GLTEK 313 (708)
Q Consensus 237 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~---~~~~~ 313 (708)
.|-+++..-|.+.++..+ .......+|.++++.-...++..... ++ ..|.+.++.++++.+.. .+...
T Consensus 7 ~lE~~v~g~Far~F~~~v-qPvEIa~~L~remd~~a~~~~~~r~~---aP-----N~y~V~Ls~~D~~~l~~~~~~l~~e 77 (116)
T PF12401_consen 7 RLERAVEGAFARVFRSEV-QPVEIAKALRREMDDQARVVSRGRTL---AP-----NVYTVELSPEDYERLSPWGDRLARE 77 (116)
T ss_dssp --SS--STHHHHHHTTSS--THHHHHHHHHHHHHT-B---TT--B-----------EEEEEEEHHHHHHH-S-SHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhCCeecCCCCEE---cC-----eeEEEEECHHHHHHHhhhHHHHHHH
Confidence 333334344444444332 22344566777777765666544321 22 25889999999999987 67777
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 005222 314 IAIPCRKALADAGLHVDK 331 (708)
Q Consensus 314 i~~~i~~~l~~~~~~~~~ 331 (708)
+...+.+.....|+....
T Consensus 78 l~~~l~~~a~~qgy~~~G 95 (116)
T PF12401_consen 78 LADYLAEHAREQGYTFVG 95 (116)
T ss_dssp HHHHHHHHHHHHT-B-SS
T ss_pred HHHHHHHHHHHCCCeecC
Confidence 777787777777766433
No 275
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=20.37 E-value=99 Score=30.19 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.5
Q ss_pred EEEEEccccceEEEEEeCCc
Q 005222 3 VVGFDIGNENCVIATVKHRG 22 (708)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (708)
++-||+|+|+++++++.+++
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 47899999999999987764
No 276
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=20.33 E-value=1.4e+02 Score=27.06 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHhhhhhccCCCHHHHHHH----HHHHHHHHHHhhcCC
Q 005222 601 KNALESYVYEMRNKLFSTYRSFASDQEREGI----SRSLQETEEWLYDDG 646 (708)
Q Consensus 601 ~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l----~~~l~e~~~WL~~~~ 646 (708)
.+.||.+++++-+=-...|.++.+++|..++ .+.++.+..||...|
T Consensus 26 ~~~L~~~l~~vsdP~s~~Ygk~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G 75 (143)
T PF09286_consen 26 LDALEQYLAEVSDPGSPNYGKYLTPEEFAALFAPSPEDVAAVKSWLKSHG 75 (143)
T ss_dssp HHHHHHHHHHHHTTTSTTTT----HHHHHHHHS--HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCCCCcccccCCCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3577888887755433458889999998775 456889999999876
No 277
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=20.25 E-value=2.4e+02 Score=29.67 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=49.1
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHH------HhHhCCCCCCCCCchhhHhchH
Q 005222 307 ASGLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLL------TSLFGREPRRSLNASECVARGC 373 (708)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l------~~~fg~~v~~~~n~~eava~GA 373 (708)
.....+.+...|+++|++++++..+|+.|.++-|=...+.++=-+ ...++.++ ..++-.++.|..|
T Consensus 46 ~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~~~p~-~~v~h~~aha~~a 117 (314)
T TIGR03723 46 SRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALALNKPL-IGVNHLEGHLLAP 117 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHhCCCE-EecccHHHHHHhh
Confidence 455677888899999999999999999999999999888886443 33335544 4556666665533
No 278
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.10 E-value=2e+02 Score=30.17 Aligned_cols=47 Identities=23% Similarity=0.184 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCccEEEEecCCCChHHHHHHHHhHhCCC
Q 005222 309 GLTEKIAIPCRKALADAGLHVDKIHSVEIVGSGSRIPAITRLLTSLFGRE 358 (708)
Q Consensus 309 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~srip~v~~~l~~~fg~~ 358 (708)
..+..+...++++|+++++++++|+.+++-.++ +.+.+.+.+.+|.+
T Consensus 222 ~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~~ 268 (325)
T PRK12879 222 WAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGIP 268 (325)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCCC
Confidence 334667788999999999999999999998876 44456788888743
No 279
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=20.01 E-value=91 Score=29.69 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=15.9
Q ss_pred EEEEccccceEEEEEeCC
Q 005222 4 VGFDIGNENCVIATVKHR 21 (708)
Q Consensus 4 vGID~GTt~s~va~~~~~ 21 (708)
||||.|.|||=+.+..++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999998887765
No 280
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.00 E-value=1.3e+03 Score=26.29 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHhhhH---------HHHHHHHHHHhhh--hhc------cCCCHHHHHHHHH
Q 005222 571 GMTKPELALAQETENLLAQQDITMEQTKDKKNAL---------ESYVYEMRNKLFS--TYR------SFASDQEREGISR 633 (708)
Q Consensus 571 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~~a~N~L---------Es~iy~~r~~l~~--~~~------~~~~~~e~~~l~~ 633 (708)
.+.+.|.+++......+.+.++......+|...| -+.||.....|.+ ++- ...-.+--..+.+
T Consensus 201 ~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~e 280 (557)
T COG0497 201 NLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEE 280 (557)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcCCCC-cCHHHHHHHHHHHHH--------------hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 005222 634 SLQETEEWLYDDGDD-ETANTYASKLEDLKK--------------LVDPIENRYKDGEARAQATRDLLQCIVEYRTAV 696 (708)
Q Consensus 634 ~l~e~~~WL~~~~~~-a~~~~~~~kl~~L~~--------------~~~pi~~R~~e~~~rp~~~~~l~~~l~~~~~~~ 696 (708)
...++...+++=..+ ...++++++|..|+. ....+..++....+....+..|.+.+..++..+
T Consensus 281 a~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~ 358 (557)
T COG0497 281 ASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAEL 358 (557)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Done!