Query 005223
Match_columns 707
No_of_seqs 192 out of 235
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 20:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04615 Utp14: Utp14 protein; 100.0 2E-90 4.3E-95 794.5 38.8 496 143-658 14-520 (735)
2 COG5644 Uncharacterized conser 100.0 2.3E-70 5E-75 593.9 28.6 399 148-584 188-601 (869)
3 KOG2172 Uncharacterized conser 100.0 1E-62 2.2E-67 542.3 29.1 520 30-656 8-555 (654)
4 KOG2172 Uncharacterized conser 94.7 0.011 2.5E-07 68.3 1.1 201 248-452 4-246 (654)
5 PF10175 MPP6: M-phase phospho 91.8 0.12 2.6E-06 47.9 2.5 21 502-522 3-23 (104)
6 KOG4531 M phase phosphoprotein 76.0 1.7 3.7E-05 42.9 2.0 30 501-530 10-39 (165)
7 KOG1832 HIV-1 Vpr-binding prot 57.4 9.3 0.0002 47.1 3.4 11 51-61 1394-1404(1516)
8 PF04931 DNA_pol_phi: DNA poly 49.2 32 0.0007 41.8 6.3 7 56-62 631-637 (784)
9 PF09026 CENP-B_dimeris: Centr 47.2 6.3 0.00014 36.7 0.0 19 106-124 6-24 (101)
10 PF10446 DUF2457: Protein of u 32.9 23 0.0005 40.7 1.6 7 49-55 31-37 (458)
11 COG5138 Uncharacterized conser 27.1 46 0.001 33.3 2.3 32 673-705 34-67 (168)
12 KOG4325 Uncharacterized conser 25.7 1.6E+02 0.0035 30.1 5.8 48 352-404 159-206 (212)
13 PF03115 Astro_capsid: Astrovi 24.0 26 0.00056 43.0 0.0 12 148-159 707-718 (787)
14 PF04931 DNA_pol_phi: DNA poly 22.4 95 0.0021 37.9 4.3 8 147-154 730-737 (784)
No 1
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=100.00 E-value=2e-90 Score=794.45 Aligned_cols=496 Identities=39% Similarity=0.556 Sum_probs=371.1
Q ss_pred CCCCcHHHHHHHHHhhhCCCCccccccccccccccccCCCCCccCCCCCCCCCCCccchhhhcccccCCcchhHHHHHHH
Q 005223 143 QDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMH 222 (707)
Q Consensus 143 ~~~ddd~~H~klL~~I~sl~~~~~~~~kr~k~~~~tEa~~eSEF~l~~~~~~g~~klsL~DLL~~l~~~~~~~~lkKqLk 222 (707)
++++++.+|.+||+.|++|++....+. ++++..+++.+.+|||+|++.+ +.++|+|+|||++|. ++.+..++++|.
T Consensus 14 ~~~~~~~~~~~L~~~i~~l~~~~~~~~-~~~~~~~~~~~~~sef~~~~~~--~~~kl~l~dLl~~l~-~~~~~~~~k~l~ 89 (735)
T PF04615_consen 14 DDEDDEEKHDKLLKAISSLDSKKRKKK-KKRRERIEESGKESEFNLSSSG--ADDKLSLSDLLSSLS-DSSLSKLKKQLK 89 (735)
T ss_pred ccccChHHHHHHHHHHHhccccccccc-cccccccccccCcccccCCccC--ccCcccHHHHHhhhc-chhHHHHHHHHH
Confidence 556789999999999999988754332 2344455577789999998642 245999999999999 789999999999
Q ss_pred HhhhccCcccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcCCCceeccC-CCCCCccchhhhhccCCCCCHHHHH
Q 005223 223 QMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDE-DTNLGFSTVGAIAAGFEPRTEFEKK 301 (707)
Q Consensus 223 ~l~kk~k~L~~PL~k~~qdRieRkaAYe~tkkel~KW~~~Vk~NR~AE~L~FP~-~~~~~~~t~~~~~s~fkP~TeLEke 301 (707)
.+.++..+|++|||+++|+||+|+|||++|+++|++|.|||++||+|+||+||+ +......++..+++.|+|.|+||++
T Consensus 90 ~~~~~~~~l~~PL~~~~~~r~~R~~ay~~~k~~~~kW~~~V~~nr~a~~l~Fp~~~~~~~~~~~~~~~~~~~p~t~lE~~ 169 (735)
T PF04615_consen 90 KVSKKKKTLAAPLPKREQERIERKAAYEKTKKELDKWDPTVKRNREAEHLVFPLQKEKPEDSSVASLASKFKPRTELEKE 169 (735)
T ss_pred HhhcccCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCeeeccCCCccccccchhhhhhccCCCCHHHHH
Confidence 998888889999999999999999999999999999999999999999999998 4455677888999999999999999
Q ss_pred HHHHhhhccch-hhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchhhHHHHhhHHHHHHHHHh
Q 005223 302 MASLVNDDKVK-EAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVE 380 (707)
Q Consensus 302 I~~lL~~s~l~-~~~ked~~e~L~~~kmS~EE~k~RraELrkmR~LmfreEaKAKRiKKIKSKtYHRI~KKek~K~~~ke 380 (707)
|++||+.+++. .......++.+++++||+||+++||+||++||+||||+|+|||||||||||+|||||||+++|+++++
T Consensus 170 i~~~L~~~~~~~~~~~~~~~e~~~~~~ms~eE~~~r~~el~~~R~L~~~~e~KakR~kKIKSK~yhri~kk~k~k~~~k~ 249 (735)
T PF04615_consen 170 IASILEESGLASDEKKLTEAEELALKKMSLEEAKERRAELAKMRALMFYEEAKAKRIKKIKSKTYHRILKKEKEKEQEKE 249 (735)
T ss_pred HHHHHHHcCCCcchhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcch
Confidence 99999999998 45555678899999999999999999999999999999999999999999999999999999988776
Q ss_pred h----ccCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 005223 381 M----LMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSS 456 (707)
Q Consensus 381 ~----E~DPE~A~Ee~Ek~E~~RAeERMTLKHKNtSKWAK~~~krG~~k~D~etR~ai~EQLr~~eELrrKi~g~~~~ss 456 (707)
| +.||++|+++++++|++||+|||||||+|||||||+|+++|+++||.++|++|+|||++|++||+||.+...+++
T Consensus 250 ~e~l~~~dpe~a~e~~e~~e~~Ra~ERmtlkHkn~sKWAK~~~~~G~~~~d~~~R~al~eql~~~~eL~~Ki~~~~~~~~ 329 (735)
T PF04615_consen 250 FEELEESDPEAAEEELEKLEKKRAEERMTLKHKNTSKWAKSMLRRGRAKYDEEARQALQEQLRRGEELTRKIEGEDSSDS 329 (735)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHhhccccccCHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 6 379999999999999999999999999999999999999999999999999999999999999999999765443
Q ss_pred CCCC-CCcccccccCC--CCcHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 005223 457 SDDS-SDEDDVDENSA--GSDQDRASKLYATAKEKTLKVLAE-DDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEY 532 (707)
Q Consensus 457 sDes-~~e~D~dedsd--~~D~d~~~~l~~kake~~L~~Le~-d~~~p~kGLm~MkFMqrAeerrreen~ee~~~~lrEl 532 (707)
++++ +++++++.+++ +.+......+... +..+.. ....+.+|||+|+||++|++++++++.+++..+++||
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~gl~~mkFMk~a~erk~ee~~~e~~~l~~El 404 (735)
T PF04615_consen 330 DEDEESDEEEEDEDDDEDDDDDDNPWMLRKK-----LEKLKEEEEDEEKKGLMSMKFMKRAEERKKEENDEEAEELRREL 404 (735)
T ss_pred ccccccccccchhhhccccccccCHHHHHHh-----hhhhhhcccchhhhhccchHHHHhhHHhHHHHHHHHHHHHHHHH
Confidence 3221 11111111111 0011100111111 222221 1222378999999999999999999999999999999
Q ss_pred HHHhhhccCCCCcc-cccccccCCcccccCCcccccCCCCccccCCCCCCCCCcchhhhhhccccCCCCccccccccccc
Q 005223 533 ESSLKKLEGTGGEE-NLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTD 611 (707)
Q Consensus 533 e~~l~~~e~~~~ee-~~~~~~~~GRRvfgp~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (707)
++. +++..+. ...+..+.||++||++.......+......+ .........++......+.....+....+
T Consensus 405 e~~----~~~~~e~~~~~~~~~~gR~~~~~~~~~~~~~s~~~~~~~---~~~~k~e~~sd~~~~~~~~~~~~~~~~~~-- 475 (735)
T PF04615_consen 405 EEE----ESEDEEEEEENEEKNVGRRKFGPGSSEKAKESKKDSKEN---KSESKEEKSSDEEEDKENKMEDKVEKEEN-- 475 (735)
T ss_pred hhh----hhcccccccccccccccccccccccccccccccchhhhh---hhhhhhccccccccccccccccccccccc--
Confidence 852 2222211 1245678999999996522222211111110 11111111111111111100000011111
Q ss_pred cceecccCCCCCCcccccccccccCCCCCcceeEeeecccccccccc
Q 005223 612 SFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKS 658 (707)
Q Consensus 612 ~~~~~~d~~~~~~~~~~~~~~iv~~pgpktt~ev~~~as~swkk~k~ 658 (707)
....-.................||..++++.........|++++.
T Consensus 476 --~~~~~k~~~~~~~~~~~~~~~eNpwl~~~~k~~k~~~~~~~k~~~ 520 (735)
T PF04615_consen 476 --KKKKKKSESAEDEEEKEEDDKENPWLKEESKKSKSKKKKKKKKKE 520 (735)
T ss_pred --ccccccccccccccccccccccchhhhcccccccccccccccccc
Confidence 000112233333445567889999999999999999999999873
No 2
>COG5644 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.3e-70 Score=593.88 Aligned_cols=399 Identities=30% Similarity=0.430 Sum_probs=310.4
Q ss_pred HHHHHHHHHhhhCCCCccccccccccccccc---cCCCCCccCCCCCCC-C-CCCccchhhhcccccCCcchhHHHHHHH
Q 005223 148 DERHLRMLQGVTGMPSEFFEGKKKKKNVVIS---EAYPESEFNPTRDVL-D-GNGQISIDDLLEPLQGKSGYSKLRKRMH 222 (707)
Q Consensus 148 d~~H~klL~~I~sl~~~~~~~~kr~k~~~~t---Ea~~eSEF~l~~~~~-~-g~~klsL~DLL~~l~~~~~~~~lkKqLk 222 (707)
+.+..-++..|+++.....+. +.+.++ ..+.+.+|.++.... + .+++|+|.|||.+|+. .+|+-.|+
T Consensus 188 d~~~d~~~n~i~s~~~de~~a----~s~~~~d~~~s~e~~~y~~~~~n~~sgss~~i~itdll~~i~~----~q~~~~~~ 259 (869)
T COG5644 188 DSKLDNLRNYIVSLKKDEADA----ESVLSSDDNDSIEEIKYDPHETNKESGSSETIDITDLLDSIPM----EQLKVSLK 259 (869)
T ss_pred hhHHHHHHHHHHHHhhhhhcc----ccccccccCCchhhhccCCcccccccCCccceeHHHhhhccCH----HHHHHhhh
Confidence 455567888899985432222 223333 334678999875432 2 2459999999999987 88999999
Q ss_pred HhhhccCcccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcCCCceeccCCCCCCccchh-hhhccCCCCCHHHHH
Q 005223 223 QMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVG-AIAAGFEPRTEFEKK 301 (707)
Q Consensus 223 ~l~kk~k~L~~PL~k~~qdRieRkaAYe~tkkel~KW~~~Vk~NR~AE~L~FP~~~~~~~~t~~-~~~s~fkP~TeLEke 301 (707)
.|.+++.+|.+|||+++|+|++|+|||++++.+|.||.|||++||+++||+||++.+..+.+.. -+++.|.|+|++|.+
T Consensus 260 ~l~~~ss~~d~pl~k~iq~r~erqaaye~tk~d~~kw~~iv~~nrksd~lifpmn~~~~~~~s~~~~~s~~~p~te~e~k 339 (869)
T COG5644 260 PLVSESSKLDAPLAKSIQDRLERQAAYEQTKNDLEKWKPIVADNRKSDQLIFPMNETARPVPSNNGLASSFEPRTESERK 339 (869)
T ss_pred hhccccccccCcchHHHHHHHHHHHHHHHhHHHHHhhchHhhhccccceeeecCCCCCCCCccccccccccCcchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988766655444 588999999999999
Q ss_pred HHHHhhhccchhhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchhhHHHHhhHHHHHHH-HHh
Q 005223 302 MASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAA-SVE 380 (707)
Q Consensus 302 I~~lL~~s~l~~~~ked~~e~L~~~kmS~EE~k~RraELrkmR~LmfreEaKAKRiKKIKSKtYHRI~KKek~K~~-~ke 380 (707)
|.++|..+||....+-..+++|++++||+|||++|+.+||.||+||||+|+||||++||||||||+|+|++++|+. +.-
T Consensus 340 ~~q~l~da~l~n~~~~~k~eela~~kls~ee~~~rt~qlr~mrelmfreerkakr~~kiksktyrkirk~~~~k~~~l~~ 419 (869)
T COG5644 340 MHQALLDAGLENESALKKQEELALNKLSVEEVAERTRQLRFMRELMFREERKAKRVAKIKSKTYRKIRKNRKEKEMALIP 419 (869)
T ss_pred HHHHHHhcccCChhhhhHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhhhccc
Confidence 9999999999887666778999999999999999999999999999999999999999999999999999998864 211
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 005223 381 MLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDS 460 (707)
Q Consensus 381 ~E~DPE~A~Ee~Ek~E~~RAeERMTLKHKNtSKWAK~~~krG~~k~D~etR~ai~EQLr~~eELrrKi~g~~~~sssDes 460 (707)
.-.|.+ -++.+.+||+|||||||||||+|+|.|+.+. .++.+||.+|.||||+|.+|++||.+....+..|.+
T Consensus 420 ~s~d~e-----ne~~e~ara~ermt~rhk~~s~w~r~ml~~~--s~~~~tre~~~e~irkgd~l~~ri~~k~~~d~ed~~ 492 (869)
T COG5644 420 KSEDLE-----NEKSEEARALERMTQRHKNTSSWTRKMLERA--SHGEGTREAVNEQIRKGDELMQRIHGKEIMDGEDVS 492 (869)
T ss_pred cccccc-----cchhHHHHHHHHHHHhhccchHHHHHHHHHh--ccCchhHHHHHHHHHhHHHHHHHHhccccccccccc
Confidence 112322 4589999999999999999999999999994 579999999999999999999999986532111111
Q ss_pred CCcccccccCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005223 461 SDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLE 540 (707)
Q Consensus 461 ~~e~D~dedsd~~D~d~~~~l~~kake~~L~~Le~d~~~p~kGLm~MkFMqrAeerrreen~ee~~~~lrEle~~l~~~e 540 (707)
.-+ ++|.+ .......+.++|-..+ +.+|||+|+||++|.+|+++++..- +++ |..++
T Consensus 493 -------~~s-~sd~d-~~eq~~~~~e~ir~~~------~~~gvl~m~fmr~~~~rq~~a~k~s----~~~----L~~ve 549 (869)
T COG5644 493 -------EFS-DSDYD-TNEQVSTAFEKIRNEE------ELKGVLGMKFMRDASNRQMAASKIS----VAD----LVKVE 549 (869)
T ss_pred -------ccc-ccccc-chhhhhhHHHHHhhhh------hhcccchhHHhhccHHHHHHHHHhH----HHH----HhcCC
Confidence 111 12222 1112233555544333 4889999999999999998876553 222 33344
Q ss_pred CCCCc--------ccccccccCCcccccCCcccccCCCCccccCCCCCCCCC
Q 005223 541 GTGGE--------ENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDS 584 (707)
Q Consensus 541 ~~~~e--------e~~~~~~~~GRRvfgp~~~~~~~~~~~~~~~~~~~~~~s 584 (707)
+++.- ..+....|.|||.|.|++.|.-+-+-..+..+|+.+|-|
T Consensus 550 ngDdi~~~e~de~~g~~I~~n~gRr~~~p~~e~~~kl~~~~Rke~fVt~s~s 601 (869)
T COG5644 550 NGDDIDVGELDEVGGDAIYANAGRREVFPVVEQRRKLAPRKRKEDFVTPSTS 601 (869)
T ss_pred CCCcccccccCCCcchhhhccccceeecccHHHHHhcCccccccccCCchHH
Confidence 43211 123346678999999988766666666677888877554
No 3
>KOG2172 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1e-62 Score=542.33 Aligned_cols=520 Identities=41% Similarity=0.569 Sum_probs=400.5
Q ss_pred cccCCCCcccccCCCCCChhhHHHHhhhcCCCCCCCCCCCCCccccccccccCCCchHHhhhhcCCCccccccccCCCCC
Q 005223 30 KKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKF 109 (707)
Q Consensus 30 ~~~~~~~~~~~~~gp~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ye~ee~~~~ee~~~n~r~d~v~~~eye~~~d~ 109 (707)
-..++..-.++..|||+|++|+++|++ ..++..+|+..+..+++|+|++++|+++|.+|.||+.
T Consensus 8 s~~~ls~~dk~~l~~~~p~sI~k~~~n----e~~~~~~dde~~l~~l~~~~d~~~peeqS~gNn~~~~------------ 71 (654)
T KOG2172|consen 8 SSKVLSKWDKRILNNHLPESILKTIEN----EKSPLNSDDEHDLSHLLYEWDEDVPEEQSIGNNDHER------------ 71 (654)
T ss_pred chhhccccchhhhCccCchHHhhhhhc----ccccCCcchhhhhhhhhhccccCChhHhhhcCcchhh------------
Confidence 334444455667799999999999987 4445555544444779999999999999999999998
Q ss_pred ccCCCCCCCCCCCchhhcccCCCCcccCCCCccCCCCcHHHHHHHHHhhhCCCCccccccccccccccccCCCCCccCCC
Q 005223 110 EDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPT 189 (707)
Q Consensus 110 ~de~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ddd~~H~klL~~I~sl~~~~~~~~kr~k~~~~tEa~~eSEF~l~ 189 (707)
+++|+.++++++ ++.+|+..|.++|+.++.|+.+.++..+ +....+++|+++|||.+
T Consensus 72 e~~~~esedD~e---------------------ed~~De~s~~~ml~~lt~mp~a~~Q~~k--k~~~~~~~Y~e~e~N~t 128 (654)
T KOG2172|consen 72 ELENKESEDDEE---------------------EDPDDEDSHDRMLKELTKMPSALFQERK--KPVRFTDSYPESEANPT 128 (654)
T ss_pred hhhccCCCCccc---------------------cCcccchhHHHHHhhhccCcHHHHhhhc--ccchhccccCccccCcc
Confidence 346666665532 3455688999999999999999888753 34555899999999987
Q ss_pred CCCCCCCCccchhhhcccccCCcchhHHHHHHHHhhhc-cCcccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcC
Q 005223 190 RDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKK-STSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNRE 268 (707)
Q Consensus 190 ~~~~~g~~klsL~DLL~~l~~~~~~~~lkKqLk~l~kk-~k~L~~PL~k~~qdRieRkaAYe~tkkel~KW~~~Vk~NR~ 268 (707)
..+..+.+-.++.+|+.+.....+...+.+.+..+.+. ++++.+|||+++|+|++|+|||+++.++++||.++|++||.
T Consensus 129 ~~vs~~ksi~s~~~L~~p~~g~~~~~kl~~~ise~~k~~ss~~~~pl~K~~q~RmeRkaa~e~~~~~~~kw~~~vk~nr~ 208 (654)
T KOG2172|consen 129 RLVSEEKSIKSIDDLKVPDMGKWGDKKLLKEISELRKDLSSAVDAPLPKPEQERMERKAAYELVHQDFNKWVKIVKRNRE 208 (654)
T ss_pred ccccccccccccchhccccccchhhHHHHHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66545555567888888888888888888888887764 57899999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCccchhhhhccCCCCCHHHHHHHHHhhhccchhhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhh
Q 005223 269 APSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLF 348 (707)
Q Consensus 269 AE~L~FP~~~~~~~~t~~~~~s~fkP~TeLEkeI~~lL~~s~l~~~~ked~~e~L~~~kmS~EE~k~RraELrkmR~Lmf 348 (707)
|.||.||++.++++++.+++++.|.|+|+||.++.++|..++|..++++. ++|+++.+| |++..||.++++||+|||
T Consensus 209 ~~~L~f~~~~~~~~~~~~~~as~~~p~tE~eek~~q~l~d~~ll~~~~~~--~el~~n~~s-e~~~~r~~~~~~mrel~f 285 (654)
T KOG2172|consen 209 ADTLIFPQNKQVGYSTVGAIASQFQPRTESEEKMAQVLDDEELLNPHKEN--EELELNKDS-EEHAKRRSEVRKMRELMF 285 (654)
T ss_pred ccceeecccccccccccchhccccccchHHHHHHhhhhhhhhccccchhh--HHHHHhhcC-hhHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988876 789999999 999999999999999999
Q ss_pred HHHHHHHHhhhhchhhHHHHhhHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHhccccCCH
Q 005223 349 RHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDE 428 (707)
Q Consensus 349 reEaKAKRiKKIKSKtYHRI~KKek~K~~~ke~E~DPE~A~Ee~Ek~E~~RAeERMTLKHKNtSKWAK~~~krG~~k~D~ 428 (707)
|+++|+|||+||||||||+|.+++..+ .-.+.+++.+.++.++++.+||+||||++|+|+|+||| |.
T Consensus 286 Reerk~kr~~kikskty~ki~~~~lek---~~~~~~~~~~~e~~e~qe~ara~eRmt~~hk~~~~w~k----------~~ 352 (654)
T KOG2172|consen 286 REERKAKRIKKIKSKTYHKIKKKELEK---RPAEKEEIDLEEEAEKQEEARAEERMTLKHKNTSQWAK----------DS 352 (654)
T ss_pred hhhhhhhHHhhhhhhhhhccchhhHhh---cccccchhhHHHHhhhHHHHHHHHHhhhhccccccccc----------Cc
Confidence 999999999999999999999998877 12347899999999999999999999999999999998 67
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCCh
Q 005223 429 GTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLP 508 (707)
Q Consensus 429 etR~ai~EQLr~~eELrrKi~g~~~~sssDes~~e~D~dedsd~~D~d~~~~l~~kake~~L~~Le~d~~~p~kGLm~Mk 508 (707)
+||.++.+|||++..|.+||.+...++++++ +.+ .. + .+..|.++.+..+
T Consensus 353 ~tre~~~eqlr~~~~L~~km~~~~~~~~~~e--------------~~e-~~-------------~--~~v~~~~~~~e~~ 402 (654)
T KOG2172|consen 353 GTREVLSEQLRIGARLKAKMNSRKSGESSDE--------------TQE-QP-------------V--DDVVPMKFEEELP 402 (654)
T ss_pred cHHHHHHHHHhhhHHHHHHhhcccccccccc--------------ccc-Cc-------------c--ccccccccccchH
Confidence 8999999999999999999999876544332 001 00 0 1345788999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcccccccccCCcccccCCcccccCCCCccccCCCCCCCCC-cch
Q 005223 509 FMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDS-EGD 587 (707)
Q Consensus 509 FMqrAeerrreen~ee~~~~lrEle~~l~~~e~~~~ee~~~~~~~~GRRvfgp~~~~~~~~~~~~~~~~~~~~~~s-~~~ 587 (707)
||+||+.++..++.++++.. .++++..| ++. . .. |++-.| . +.....+|||++|++ ..+
T Consensus 403 ~~ar~~kk~~l~A~E~~~~~---~~~~~~~~--~~~--~-----~p-r~~~~~------~-~~e~~~~n~~d~s~~~~~~ 462 (654)
T KOG2172|consen 403 RKARAEKKKNLEAKEEARKG---TEGDEECF--GGE--E-----LP-RVVEAP------L-ESEKTKNNFVDESDEKKND 462 (654)
T ss_pred HHHHHHHHHHHHHHHHhhcc---cchhhhhh--ccc--c-----CC-chhhcc------c-ccccccccCCCchhhhhcC
Confidence 99999999988877765543 11111112 111 1 11 442222 2 234457999999999 444
Q ss_pred hhhhhccccCC-CCcccccc----cccccc-----ceecccCCC---CC---------Cccccccc----ccccCCCCCc
Q 005223 588 LEAEANMDAGN-GTNNDVQK----NVKTDS-----FTLHVDHES---HP---------DSVFKSFE----DVVRDPGPKT 641 (707)
Q Consensus 588 ~~~~~~~~~~~-~~~~~~~~----~~~~~~-----~~~~~d~~~---~~---------~~~~~~~~----~iv~~pgpkt 641 (707)
+..-.++.+.+ +.+.. .. .++-.+ +-..+|++. ++ |+|---|. ++|..-.||
T Consensus 463 ~~~~~~~~lk~~~~~~~-ps~~~~~~vp~~~~~~k~~E~ed~ed~~~Q~elI~eAFagDDVv~dFekeK~evv~~e~pk- 540 (654)
T KOG2172|consen 463 MPGVHDIQLKAVETTAS-PSRAESLAVPISQVQEKDEESEDDEDVPKQAELIAEAFAGDDVVRDFEKEKEEVVEQEKPK- 540 (654)
T ss_pred cccchhhhhhhhhhccC-ccccccccCccchhhhhhhhhccchhhhhHHHHHHHHhcCCcHHHHHHHHHHHHhhhcccc-
Confidence 43333333333 22222 11 111111 222333333 11 33433342 578889999
Q ss_pred ceeEeeecccccccc
Q 005223 642 SYDVAIFASGTWKKM 656 (707)
Q Consensus 642 t~ev~~~as~swkk~ 656 (707)
-.+|.+--=|+|--+
T Consensus 541 e~d~~LpGWGeW~G~ 555 (654)
T KOG2172|consen 541 EVDLTLPGWGEWGGV 555 (654)
T ss_pred cccccCCCcccccCc
Confidence 889999999999543
No 4
>KOG2172 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.011 Score=68.30 Aligned_cols=201 Identities=19% Similarity=0.198 Sum_probs=138.2
Q ss_pred HHHHHHHhhhccHHHHHhhcCCCceeccC-CCCCCccc-h----hhhhccCCCCCHHHHHHHHHhhhccc----hhhh-h
Q 005223 248 VYEQSKKDITKWEPLVKMNREAPSIYFDE-DTNLGFST-V----GAIAAGFEPRTEFEKKMASLVNDDKV----KEAH-K 316 (707)
Q Consensus 248 AYe~tkkel~KW~~~Vk~NR~AE~L~FP~-~~~~~~~t-~----~~~~s~fkP~TeLEkeI~~lL~~s~l----~~~~-k 316 (707)
.+..++..+.+|+..+..|-...+|.|+. +.....++ . ..+...|.-.++.++.|.+..+.+.+ .+.. .
T Consensus 4 ~~~ss~~~ls~~dk~~l~~~~p~sI~k~~~ne~~~~~~dde~~l~~l~~~~d~~~peeqS~gNn~~~~e~~~~esedD~e 83 (654)
T KOG2172|consen 4 KFNSSSKVLSKWDKRILNNHLPESILKTIENEKSPLNSDDEHDLSHLLYEWDEDVPEEQSIGNNDHERELENKESEDDEE 83 (654)
T ss_pred ccccchhhccccchhhhCccCchHHhhhhhcccccCCcchhhhhhhhhhccccCChhHhhhcCcchhhhhhccCCCCccc
Confidence 35567889999999999999999999994 22222222 2 23778899999999999998887522 1111 1
Q ss_pred ccc-------hhhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHH------HhhhhchhhHHHHhhHHH--HHHHHHh-
Q 005223 317 QDG-------SKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRK------RIKKIKSKTYHRLLKKDR--LKAASVE- 380 (707)
Q Consensus 317 ed~-------~e~L~~~kmS~EE~k~RraELrkmR~LmfreEaKAK------RiKKIKSKtYHRI~KKek--~K~~~ke- 380 (707)
++. ..++.+..|......+|-. ..|.+..|.|..+. =-|.|+|.-|+..-...+ -..+...
T Consensus 84 ed~~De~s~~~ml~~lt~mp~a~~Q~~kk---~~~~~~~Y~e~e~N~t~~vs~~ksi~s~~~L~~p~~g~~~~~kl~~~i 160 (654)
T KOG2172|consen 84 EDPDDEDSHDRMLKELTKMPSALFQERKK---PVRFTDSYPESEANPTRLVSEEKSIKSIDDLKVPDMGKWGDKKLLKEI 160 (654)
T ss_pred cCcccchhHHHHHhhhccCcHHHHhhhcc---cchhccccCccccCccccccccccccccchhccccccchhhHHHHHHH
Confidence 111 1334677888877766554 78899999999988 678999999998765433 1112222
Q ss_pred --hc-cCHHHHHHHHHHHHHHHHHHHhc--cccccccHHHHHHHHhccccCCHHH----------HHHHHHHHHHHHHHH
Q 005223 381 --ML-MDPEAAKEEARKQEFKRAEERMT--LKHKNSSRWAKRILKRGLDAQDEGT----------RAAITEQLQQHALLT 445 (707)
Q Consensus 381 --~E-~DPE~A~Ee~Ek~E~~RAeERMT--LKHKNtSKWAK~~~krG~~k~D~et----------R~ai~EQLr~~eELr 445 (707)
+. ..+-.+...+.+.+..|.+.+|. |.|++-+||++.++.-+- .+..-+ =.+|+.|++-+.+|.
T Consensus 161 se~~k~~ss~~~~pl~K~~q~RmeRkaa~e~~~~~~~kw~~~vk~nr~-~~~L~f~~~~~~~~~~~~~~as~~~p~tE~e 239 (654)
T KOG2172|consen 161 SELRKDLSSAVDAPLPKPEQERMERKAAYELVHQDFNKWVKIVKRNRE-ADTLIFPQNKQVGYSTVGAIASQFQPRTESE 239 (654)
T ss_pred HHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccceeecccccccccccchhccccccchHHH
Confidence 22 23445555677778888888888 999999999999765442 222222 245667778888888
Q ss_pred HHhhhcC
Q 005223 446 RKMKSMK 452 (707)
Q Consensus 446 rKi~g~~ 452 (707)
.|+.+.-
T Consensus 240 ek~~q~l 246 (654)
T KOG2172|consen 240 EKMAQVL 246 (654)
T ss_pred HHHhhhh
Confidence 8888754
No 5
>PF10175 MPP6: M-phase phosphoprotein 6; InterPro: IPR019324 This entry describes M-phase phosphoprotein 6 (MPP6), which is involved in generation of the 3' end of the 5.8S rRNA precursor [].
Probab=91.78 E-value=0.12 Score=47.87 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=16.9
Q ss_pred ccccCChhhHHHHHHHHHHHH
Q 005223 502 SGVLSLPFMVRGMKKRKEEAI 522 (707)
Q Consensus 502 kGLm~MkFMqrAeerrreen~ 522 (707)
++|++||||||+..+..++..
T Consensus 3 ~~ll~MKFMQR~~~~~~k~~~ 23 (104)
T PF10175_consen 3 SNLLDMKFMQRAKEKEEKEQL 23 (104)
T ss_pred hhhhhhhHhhhhhHHHHHHHH
Confidence 579999999999988755443
No 6
>KOG4531 consensus M phase phosphoprotein 6 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.04 E-value=1.7 Score=42.90 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=21.1
Q ss_pred CccccCChhhHHHHHHHHHHHHHHHHHHHH
Q 005223 501 ESGVLSLPFMVRGMKKRKEEAIQEANAALQ 530 (707)
Q Consensus 501 ~kGLm~MkFMqrAeerrreen~ee~~~~lr 530 (707)
.+||+.||||||.+-+......++..++|-
T Consensus 10 S~~lLdMKFMqr~~~k~~Kk~~~e~~~~i~ 39 (165)
T KOG4531|consen 10 SSSLLDMKFMQRIETKAAKKKEAELDQLIT 39 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999887765555554444443
No 7
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=57.37 E-value=9.3 Score=47.11 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=6.7
Q ss_pred HHHHhhhcCCC
Q 005223 51 RKEIDRLNTNS 61 (707)
Q Consensus 51 ~~~~~~~~~~~ 61 (707)
.=||.++-|+.
T Consensus 1394 ~yEIGR~r~~~ 1404 (1516)
T KOG1832|consen 1394 MYEIGRRRPTD 1404 (1516)
T ss_pred hhhhcccCCCc
Confidence 35777766653
No 8
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=49.19 E-value=32 Score=41.80 Aligned_cols=7 Identities=14% Similarity=0.135 Sum_probs=3.3
Q ss_pred hhcCCCC
Q 005223 56 RLNTNSL 62 (707)
Q Consensus 56 ~~~~~~~ 62 (707)
-|++.+.
T Consensus 631 vl~~~~~ 637 (784)
T PF04931_consen 631 VLDAKEN 637 (784)
T ss_pred HhccCCC
Confidence 3564443
No 9
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=47.23 E-value=6.3 Score=36.66 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCCCCCCch
Q 005223 106 PEKFEDENVLSDDEDDNND 124 (707)
Q Consensus 106 ~~d~~de~v~~~~~~~~~~ 124 (707)
....+|++-+||++++++|
T Consensus 6 ~eg~~dse~dsdEdeeeed 24 (101)
T PF09026_consen 6 LEGEEDSESDSDEDEEEED 24 (101)
T ss_dssp -------------------
T ss_pred cccCcccccccccchhhhh
Confidence 3455666666666655444
No 10
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=32.94 E-value=23 Score=40.67 Aligned_cols=7 Identities=43% Similarity=0.567 Sum_probs=3.8
Q ss_pred hhHHHHh
Q 005223 49 SLRKEID 55 (707)
Q Consensus 49 ~~~~~~~ 55 (707)
-|.||+.
T Consensus 31 tlkKE~~ 37 (458)
T PF10446_consen 31 TLKKENA 37 (458)
T ss_pred HHHHHHH
Confidence 4556654
No 11
>COG5138 Uncharacterized conserved protein [Function unknown]
Probab=27.11 E-value=46 Score=33.28 Aligned_cols=32 Identities=31% Similarity=0.615 Sum_probs=24.6
Q ss_pred ccccccCCCcceehhH--HHHHHHHHHHHhhcccc
Q 005223 673 VEPALNDQGLEVVPFW--SFLLLYSYVIIRGLQFL 705 (707)
Q Consensus 673 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 705 (707)
+.++..|+-||| ||| +||++-++|-+-|-.|+
T Consensus 34 gr~~p~n~kvel-P~wLa~~Lainsfv~~l~p~~f 67 (168)
T COG5138 34 GRILPENRKVEL-PYWLASFLAINSFVCELGPGFF 67 (168)
T ss_pred CcccCCCCeeec-hHHHHHHHHHhhhHHhcCcchH
Confidence 467788899985 999 57888888888776554
No 12
>KOG4325 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.70 E-value=1.6e+02 Score=30.12 Aligned_cols=48 Identities=33% Similarity=0.356 Sum_probs=28.9
Q ss_pred HHHHHhhhhchhhHHHHhhHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHh
Q 005223 352 MKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERM 404 (707)
Q Consensus 352 aKAKRiKKIKSKtYHRI~KKek~K~~~ke~E~DPE~A~Ee~Ek~E~~RAeERM 404 (707)
-++|||+-+|.|. +--+-+.+.+..-+.+|+ .+|+++++++.||+|-.
T Consensus 159 dkaKkIkaLKKKi----R~tEalQQkiaagdln~~-qkEkfeKLaerRa~eea 206 (212)
T KOG4325|consen 159 DKAKKIKALKKKI----RLTEALQQKIAAGDLNPE-QKEKFEKLAERRAEEEA 206 (212)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHhcccCCHH-HHHHHHHHHHHHHHHHH
Confidence 4677777665432 111222222333356787 57889999999998753
No 13
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=23.98 E-value=26 Score=42.99 Aligned_cols=12 Identities=0% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhh
Q 005223 148 DERHLRMLQGVT 159 (707)
Q Consensus 148 d~~H~klL~~I~ 159 (707)
+..++.||.++-
T Consensus 707 e~~R~~L~nTLV 718 (787)
T PF03115_consen 707 ENNRVTLFNTLV 718 (787)
T ss_dssp ------------
T ss_pred chhHHHHHHHHH
Confidence 567777887733
No 14
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=22.43 E-value=95 Score=37.92 Aligned_cols=8 Identities=25% Similarity=0.654 Sum_probs=3.6
Q ss_pred cHHHHHHH
Q 005223 147 NDERHLRM 154 (707)
Q Consensus 147 dd~~H~kl 154 (707)
||+.-.+|
T Consensus 730 dDe~m~~l 737 (784)
T PF04931_consen 730 DDEQMMAL 737 (784)
T ss_pred CHHHHHHH
Confidence 44444443
Done!