Query 005223
Match_columns 707
No_of_seqs 192 out of 235
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 19:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 11.1 1.4E+02 0.0046 25.0 2.4 16 362-377 9-24 (64)
2 3c01_A Surface presentation of 9.4 4.4E+02 0.015 20.7 4.7 34 371-405 3-36 (48)
3 4dzo_A Mitotic spindle assembl 8.9 2.7E+02 0.0093 25.5 3.9 30 338-367 4-36 (123)
4 3bzy_A ESCU; auto cleavage pro 7.2 6.1E+02 0.021 20.4 4.7 34 371-405 9-42 (54)
5 3lub_A Putative creatinine ami 6.5 1.4E+02 0.0049 30.1 0.9 7 42-48 34-40 (254)
6 4ayb_Q DNA-directed RNA polyme 6.2 6E+02 0.02 22.6 4.5 47 323-373 54-100 (104)
7 3ovu_B Iron-regulated surface 5.9 1.8E+02 0.0062 27.8 1.2 22 640-661 78-99 (164)
8 4ae7_A Thioesterase superfamil 4.9 2.3E+02 0.0078 28.3 1.3 13 650-662 52-64 (220)
9 2kmf_A Photosystem II 11 kDa p 4.9 3.7E+02 0.013 24.6 2.5 38 206-244 62-101 (115)
10 2p62_A Hypothetical protein PH 4.7 2.9E+02 0.0099 28.3 1.8 47 609-656 88-151 (241)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=11.09 E-value=1.4e+02 Score=25.02 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=12.3
Q ss_pred hhhHHHHhhHHHHHHH
Q 005223 362 SKTYHRLLKKDRLKAA 377 (707)
Q Consensus 362 SKtYHRI~KKek~K~~ 377 (707)
-|.||+|+|+...++.
T Consensus 9 aKQy~~IlrRR~~Rak 24 (64)
T 4g92_A 9 AKQFHRILKRRVARQK 24 (64)
T ss_dssp TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4899999988765554
No 2
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=9.35 E-value=4.4e+02 Score=20.66 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhc
Q 005223 371 KDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMT 405 (707)
Q Consensus 371 Kek~K~~~ke~E~DPE~A~Ee~Ek~E~~RAeERMT 405 (707)
|+..|.+.|+.|.||+- +..+..+-+..|..||.
T Consensus 3 kqEvK~E~Ke~EGdP~i-K~~~R~~~~e~a~~~m~ 36 (48)
T 3c01_A 3 KEEVKREMKEQEGNPEV-KSKRREVHMEILSEQVK 36 (48)
T ss_pred HHHHHHHHHhccCCHHH-HHHHHHHHHHHHHhHHH
Confidence 44567777888899984 44455566666666764
No 3
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=8.87 E-value=2.7e+02 Score=25.45 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhh---chhhHHH
Q 005223 338 NHVAKMRSLLFRHEMKRKRIKKI---KSKTYHR 367 (707)
Q Consensus 338 aELrkmR~LmfreEaKAKRiKKI---KSKtYHR 367 (707)
.|++.+++-+.-.+.|..|+|-| ||..||.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFRe 36 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRK 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777888888888866 4445544
No 4
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=7.16 E-value=6.1e+02 Score=20.36 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHhc
Q 005223 371 KDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMT 405 (707)
Q Consensus 371 Kek~K~~~ke~E~DPE~A~Ee~Ek~E~~RAeERMT 405 (707)
|+..|.+.|+.|.||+- +..+..+-+..|..||.
T Consensus 9 kqEvK~E~Ke~EGdP~i-K~r~R~~~re~a~~~m~ 42 (54)
T 3bzy_A 9 KDEVKREAKDTDGNPEI-KGERRRLHSEIQSGSLA 42 (54)
T ss_pred HHHHHHHHHhccCCHHH-HHHHHHHHHHHHHhHHH
Confidence 44556677788899984 44455566666766764
No 5
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=6.53 E-value=1.4e+02 Score=30.08 Aligned_cols=7 Identities=29% Similarity=0.453 Sum_probs=3.8
Q ss_pred CCCCCCh
Q 005223 42 KGPRLPN 48 (707)
Q Consensus 42 ~gp~lp~ 48 (707)
||||||-
T Consensus 34 HGpHLPl 40 (254)
T 3lub_A 34 HNLHLPY 40 (254)
T ss_dssp BTTTBBT
T ss_pred cCCCccc
Confidence 5555553
No 6
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=6.22 E-value=6e+02 Score=22.56 Aligned_cols=47 Identities=28% Similarity=0.265 Sum_probs=16.3
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchhhHHHHhhHHH
Q 005223 323 LELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDR 373 (707)
Q Consensus 323 L~~~kmS~EE~k~RraELrkmR~LmfreEaKAKRiKKIKSKtYHRI~KKek 373 (707)
|-..++|++||+.--....+ .|-.--+.+|-++--||+..+-+||++
T Consensus 54 Ll~gkISIeEAKK~Fedn~~----~yek~d~k~ka~~~~~~~~~~~~~~~~ 100 (104)
T 4ayb_Q 54 LLNGKISVDEAKRLFEDNYK----DYEKRDSRRKAKKAASKKVKKTKKKEK 100 (104)
T ss_dssp HHHCCSCHHHHHHHHHHHHH----HHHHHHHHC------------------
T ss_pred HHcCcccHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHhhhhhc
Confidence 55678999999875444332 111222344566777777777776654
No 7
>3ovu_B Iron-regulated surface determinant protein H; haemoglobin, AHSP, NEAT domain, ISDH, protein-protein comple pathogen interaction, oxygen transport-protein binding COMP; HET: HEM; 2.83A {Staphylococcus aureus} PDB: 3s48_A* 3szk_F* 2h3k_A
Probab=5.90 E-value=1.8e+02 Score=27.79 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=19.0
Q ss_pred CcceeEeeeccccccccccCCC
Q 005223 640 KTSYDVAIFASGTWKKMKSGND 661 (707)
Q Consensus 640 ktt~ev~~~as~swkk~k~~~~ 661 (707)
||++|.++-...+|||+---++
T Consensus 78 k~~vEl~l~tastwkKFEVYe~ 99 (164)
T 3ovu_B 78 KAEVELDINTASTWKKFEVYEN 99 (164)
T ss_dssp SEEEEEEESCTTTEEEEEEBSS
T ss_pred CceEEEeeccccceeeeEEecC
Confidence 8999999999999999965443
No 8
>4ae7_A Thioesterase superfamily member 5; hydrolase, hotdog-fold; 1.45A {Homo sapiens}
Probab=4.93 E-value=2.3e+02 Score=28.32 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=11.4
Q ss_pred cccccccccCCCC
Q 005223 650 SGTWKKMKSGNDV 662 (707)
Q Consensus 650 s~swkk~k~~~~~ 662 (707)
+|+|+++.|-+.+
T Consensus 52 ~~~w~~~~~~~~~ 64 (220)
T 4ae7_A 52 SSGWIKLPSFKSN 64 (220)
T ss_dssp HSSCEECCCCSCS
T ss_pred CCCeEECcccccC
Confidence 8999999988764
No 9
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=4.86 E-value=3.7e+02 Score=24.57 Aligned_cols=38 Identities=13% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccccCCcchhHHHHHHHHhhhc--cCcccCCCCchHHHHHH
Q 005223 206 EPLQGKSGYSKLRKRMHQMRKK--STSVLAPLPKPEQEKLE 244 (707)
Q Consensus 206 ~~l~~~~~~~~lkKqLk~l~kk--~k~L~~PL~k~~qdRie 244 (707)
..+.+.+++..|..-|+.|.+- +.. ..|||+...+||.
T Consensus 62 ~~v~g~~Sf~tm~tAlNaLAGHY~s~g-~~PlPek~k~Rl~ 101 (115)
T 2kmf_A 62 GDAGGLKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQ 101 (115)
T ss_dssp HCSSSCHHHHHHHHHHHHHHHHHHHHS-SCCCCHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHH
No 10
>2p62_A Hypothetical protein PH0156; structural genomics, pyrococcu horikoshii OT3, PSI, protein structure initiative; 2.50A {Pyrococcus horikoshii} SCOP: e.67.1.1
Probab=4.69 E-value=2.9e+02 Score=28.34 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=0.0
Q ss_pred ccccceecccCCCCCCcccccccccccCCCCCc----------ceeEeeec-------ccccccc
Q 005223 609 KTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKT----------SYDVAIFA-------SGTWKKM 656 (707)
Q Consensus 609 ~~~~~~~~~d~~~~~~~~~~~~~~iv~~pgpkt----------t~ev~~~a-------s~swkk~ 656 (707)
+..++-.--|.|.. .++|.++++++++-||+. .+=+=++. ..+|++|
T Consensus 88 ~v~~IgIarDaD~d-~~a~qSI~~~L~s~~~~~~~~~~~~g~tkI~pl~mp~~~~~~~~~~~kg~ 151 (241)
T 2p62_A 88 NVEEVYVVRDVDEG-NDVFEWVLSFLREREVRVDNGAIVTEGVKIYPYGMGNLTLNEPFVKEKKE 151 (241)
T ss_dssp CEEEEEEEEESSSS-SCHHHHHHTTCTTCCCEEETTEEEETTEEEEEEEECCSCCCCTTBCCCCS
T ss_pred ccceEEEEEecCCC-ccHHHHHHHHHHhcCCCCCccccccCCeEEEEEecCcccccCCCccccch
Done!