Query 005223
Match_columns 707
No_of_seqs 192 out of 235
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 19:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005223.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005223hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 16.5 39 0.0028 21.8 2.1 13 686-698 9-21 (26)
2 d1jb0x_ f.23.20.1 (X:) Subunit 8.4 93 0.0068 20.2 2.1 22 685-706 6-27 (29)
3 d2glia5 g.37.1.1 (A:229-257) F 7.5 51 0.0037 21.9 0.5 11 46-56 16-26 (29)
4 d1eysh2 f.23.10.1 (H:7-43) Pho 6.2 1.4E+02 0.0099 20.8 2.1 15 685-699 11-25 (37)
5 d2dlqa4 g.37.1.1 (A:8-34) GLI- 4.4 1.4E+02 0.01 19.1 1.2 15 358-372 8-22 (27)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 4.0 4E+02 0.029 18.1 3.3 24 675-698 3-29 (37)
7 d1qr4a2 b.1.2.1 (A:88-175) Ten 3.8 2E+02 0.015 21.0 1.9 20 632-651 55-74 (88)
8 d2ibga1 b.1.2.1 (A:573-667) He 3.8 2E+02 0.015 21.1 1.9 19 633-651 68-86 (95)
9 d2gdwa1 a.28.1.2 (A:8-83) Pept 3.5 2.4E+02 0.017 21.0 2.1 16 293-308 3-18 (76)
10 d1x5ja1 b.1.2.1 (A:8-107) Neog 3.5 1.7E+02 0.012 21.5 1.2 20 633-652 64-83 (100)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=16.50 E-value=39 Score=21.82 Aligned_cols=13 Identities=38% Similarity=0.843 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHH
Q 005223 686 PFWSFLLLYSYVI 698 (707)
Q Consensus 686 ~~~~~~~~~~~~~ 698 (707)
-||.|+.|..|.+
T Consensus 9 ~fw~ffalli~yl 21 (26)
T d1rzhh2 9 SFWIFLAGLIYYL 21 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677666655554
No 2
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=8.45 E-value=93 Score=20.22 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=15.6
Q ss_pred ehhHHHHHHHHHHHHhhccccc
Q 005223 685 VPFWSFLLLYSYVIIRGLQFLA 706 (707)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~ 706 (707)
-.||..|||-.-.|+-..-|.|
T Consensus 6 rt~wa~lllainflvaayyfaa 27 (29)
T d1jb0x_ 6 RTFWAVLLLAINFLVAAYYFAA 27 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3699999988777766555543
No 3
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.53 E-value=51 Score=21.95 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=9.0
Q ss_pred CChhhHHHHhh
Q 005223 46 LPNSLRKEIDR 56 (707)
Q Consensus 46 lp~~~~~~~~~ 56 (707)
=||||||.+..
T Consensus 16 dPSSLRKH~k~ 26 (29)
T d2glia5 16 DPSSLRKHVKT 26 (29)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 38999999864
No 4
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=6.22 E-value=1.4e+02 Score=20.80 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=8.2
Q ss_pred ehhHHHHHHHHHHHH
Q 005223 685 VPFWSFLLLYSYVII 699 (707)
Q Consensus 685 ~~~~~~~~~~~~~~~ 699 (707)
.-||.|+....|.+-
T Consensus 11 y~Fw~FFagLi~YL~ 25 (37)
T d1eysh2 11 WAFWLFFFGLIIYLR 25 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456766655554443
No 5
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.38 E-value=1.4e+02 Score=19.09 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.4
Q ss_pred hhhchhhHHHHhhHH
Q 005223 358 KKIKSKTYHRLLKKD 372 (707)
Q Consensus 358 KKIKSKtYHRI~KKe 372 (707)
|+.+||-|-++|.+.
T Consensus 8 k~f~skyylkvhnr~ 22 (27)
T d2dlqa4 8 KKFLSKYYLKVHNRK 22 (27)
T ss_dssp CCCSSHHHHHHHHHH
T ss_pred HHHHHhHhhhhcccc
Confidence 567899999998764
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.96 E-value=4e+02 Score=18.12 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=16.2
Q ss_pred ccccCCCccee---hhHHHHHHHHHHH
Q 005223 675 PALNDQGLEVV---PFWSFLLLYSYVI 698 (707)
Q Consensus 675 ~~~~~~~~~~~---~~~~~~~~~~~~~ 698 (707)
|--|+|.+|+- -||..||++...|
T Consensus 3 pnpn~q~veLNrtsLy~GlLlifvl~v 29 (37)
T d2axtl1 3 PNPNRQPVELNRTSLYLGLLLILVLAL 29 (37)
T ss_dssp CCSSCCCBCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccccchhhHHHHHHHHHHHHH
Confidence 44577888875 4888877665433
No 7
>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.78 E-value=2e+02 Score=21.02 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.0
Q ss_pred ccccCCCCCcceeEeeeccc
Q 005223 632 DVVRDPGPKTSYDVAIFASG 651 (707)
Q Consensus 632 ~iv~~pgpktt~ev~~~as~ 651 (707)
=++.+.-|-|+|.|.|+|-+
T Consensus 55 ~~i~~L~p~t~Y~~~V~a~~ 74 (88)
T d1qr4a2 55 TKLVKLVPGVDYNVNIISVK 74 (88)
T ss_dssp EEECSCCSSCEEEEEEEEEE
T ss_pred EEECCCCCCCEEEEEEEEEe
Confidence 46788899999999999863
No 8
>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.76 E-value=2e+02 Score=21.13 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=16.2
Q ss_pred cccCCCCCcceeEeeeccc
Q 005223 633 VVRDPGPKTSYDVAIFASG 651 (707)
Q Consensus 633 iv~~pgpktt~ev~~~as~ 651 (707)
+|.+.-|-|+|+|-|.|-+
T Consensus 68 ~i~~L~p~t~Y~~~V~A~n 86 (95)
T d2ibga1 68 KIAPLETATMYEFKLQSFS 86 (95)
T ss_dssp EECSCCTTCEEEEEEEEEC
T ss_pred EEeeccCCeEEEEEEEEEe
Confidence 5778899999999999853
No 9
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=3.49 E-value=2.4e+02 Score=21.03 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHhhh
Q 005223 293 EPRTEFEKKMASLVND 308 (707)
Q Consensus 293 kP~TeLEkeI~~lL~~ 308 (707)
.|+|++|+.|.+++.+
T Consensus 3 ~P~~~~E~~l~~i~~~ 18 (76)
T d2gdwa1 3 APTNAVESKLAEIWER 18 (76)
T ss_dssp CCCSHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH
Confidence 4899999999998765
No 10
>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.46 E-value=1.7e+02 Score=21.53 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=0.0
Q ss_pred cccCCCCCcceeEeeecccc
Q 005223 633 VVRDPGPKTSYDVAIFASGT 652 (707)
Q Consensus 633 iv~~pgpktt~ev~~~as~s 652 (707)
+|.+..|-|.|+|-|.|.+.
T Consensus 64 ~i~~L~p~t~Y~~~V~a~n~ 83 (100)
T d1x5ja1 64 LVTGLKPNTLYEFSVMVTKG 83 (100)
T ss_dssp EEESCCTTCEECCEEEEECS
T ss_pred EECCCCCCCEEEEEEEEEeC
Done!