Query 005225
Match_columns 707
No_of_seqs 340 out of 2261
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 20:05:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03138 Protein TOC75; Provis 100.0 1.6E-68 3.4E-73 600.8 60.3 552 134-706 145-795 (796)
2 TIGR00992 3a0901s03IAP75 chlor 100.0 2.9E-67 6.2E-72 608.4 60.9 540 138-706 109-717 (718)
3 COG4775 Outer membrane protein 100.0 3.7E-67 8.1E-72 602.4 59.8 541 130-706 165-765 (766)
4 PRK11067 outer membrane protei 100.0 5.1E-64 1.1E-68 599.4 65.3 540 130-706 168-802 (803)
5 TIGR03303 OM_YaeT outer membra 100.0 2.2E-60 4.8E-65 565.3 66.1 537 130-706 143-740 (741)
6 COG0729 Outer membrane protein 100.0 2.1E-42 4.5E-47 387.3 38.3 469 188-706 81-593 (594)
7 COG2831 FhaC Hemolysin activat 100.0 3E-33 6.6E-38 314.1 45.6 454 218-706 75-553 (554)
8 PF01103 Bac_surface_Ag: Surfa 100.0 4.2E-31 9.1E-36 282.3 34.0 283 404-706 1-322 (323)
9 KOG2602 Predicted cell surface 99.9 1.2E-24 2.6E-29 226.4 17.2 381 287-706 34-456 (457)
10 TIGR03303 OM_YaeT outer membra 99.9 4.6E-21 1E-25 228.3 42.5 231 128-374 60-322 (741)
11 PRK11067 outer membrane protei 99.9 2E-22 4.3E-27 241.5 29.8 233 129-374 84-347 (803)
12 COG4775 Outer membrane protein 99.9 8.8E-21 1.9E-25 219.4 36.9 233 129-377 84-347 (766)
13 PF03865 ShlB: Haemolysin secr 99.9 8.2E-21 1.8E-25 208.3 34.2 338 319-692 10-378 (404)
14 PF07244 Surf_Ag_VNR: Surface 98.8 2.9E-08 6.4E-13 82.6 8.4 72 137-215 1-78 (78)
15 PF07244 Surf_Ag_VNR: Surface 98.7 6.9E-08 1.5E-12 80.4 9.8 73 217-289 2-78 (78)
16 PLN03138 Protein TOC75; Provis 98.7 8.5E-08 1.8E-12 110.3 13.4 151 130-289 220-426 (796)
17 PF08479 POTRA_2: POTRA domain 98.6 1.9E-07 4E-12 77.4 8.7 72 218-289 3-76 (76)
18 TIGR00992 3a0901s03IAP75 chlor 98.5 8.6E-07 1.9E-11 104.3 15.0 155 130-294 173-353 (718)
19 COG2831 FhaC Hemolysin activat 98.4 5.9E-05 1.3E-09 86.0 25.4 156 131-297 67-228 (554)
20 COG0729 Outer membrane protein 97.4 0.0011 2.5E-08 75.7 12.9 151 130-289 107-275 (594)
21 PF08479 POTRA_2: POTRA domain 96.5 0.015 3.2E-07 48.0 7.9 70 138-215 2-76 (76)
22 PF08478 POTRA_1: POTRA domain 85.2 1.7 3.7E-05 34.7 4.8 66 291-370 3-68 (69)
23 PF08478 POTRA_1: POTRA domain 79.9 5 0.00011 31.9 5.6 67 217-288 2-68 (69)
24 PRK05529 cell division protein 78.1 8.5 0.00018 39.7 8.0 70 290-373 62-131 (255)
25 PRK05529 cell division protein 60.9 42 0.00092 34.6 8.7 76 134-219 58-133 (255)
26 PF11854 DUF3374: Protein of u 57.1 3.9E+02 0.0084 31.5 26.3 193 465-693 333-548 (637)
27 COG1589 FtsQ Cell division sep 53.6 36 0.00078 35.4 6.8 70 290-373 61-130 (269)
28 PF10437 Lip_prot_lig_C: Bacte 52.4 8.6 0.00019 32.3 1.6 58 282-349 20-77 (86)
29 PF11854 DUF3374: Protein of u 48.8 2.4E+02 0.0051 33.3 13.1 62 440-501 537-600 (637)
30 PF10437 Lip_prot_lig_C: Bacte 45.5 50 0.0011 27.6 5.2 53 202-258 14-68 (86)
31 PRK09408 ompX outer membrane p 44.6 1.7E+02 0.0038 28.1 9.4 38 668-706 128-170 (171)
32 PRK10775 cell division protein 39.0 98 0.0021 32.3 7.3 70 290-373 57-128 (276)
33 TIGR02876 spore_yqfD sporulati 37.3 84 0.0018 34.5 6.8 68 138-216 104-175 (382)
34 KOG2602 Predicted cell surface 34.6 1.1E+02 0.0024 33.7 6.9 75 138-219 37-120 (457)
35 PF13505 OMP_b-brl: Outer memb 34.0 1.3E+02 0.0028 27.6 6.9 83 622-706 85-175 (176)
36 PF15603 Imm45: Immunity prote 31.9 89 0.0019 26.1 4.5 61 207-267 9-77 (82)
37 TIGR03509 OMP_MtrB_PioB decahe 30.4 6.5E+02 0.014 29.8 13.2 34 464-497 575-608 (649)
38 PF11059 DUF2860: Protein of u 30.2 3.5E+02 0.0076 28.6 9.6 93 585-693 46-143 (297)
39 PF04338 DUF481: Protein of un 29.4 5.3E+02 0.011 24.9 21.4 32 471-502 85-120 (210)
40 COG1589 FtsQ Cell division sep 28.3 1.4E+02 0.0031 30.9 6.5 116 137-267 60-191 (269)
41 PRK10808 outer membrane protei 26.2 4.4E+02 0.0094 28.4 10.1 69 623-692 100-170 (351)
42 PF13505 OMP_b-brl: Outer memb 23.1 5.6E+02 0.012 23.1 12.8 30 468-497 127-156 (176)
43 PF06316 Ail_Lom: Enterobacter 20.1 1.1E+02 0.0025 29.9 3.5 37 669-706 157-198 (199)
No 1
>PLN03138 Protein TOC75; Provisional
Probab=100.00 E-value=1.6e-68 Score=600.78 Aligned_cols=552 Identities=22% Similarity=0.371 Sum_probs=454.5
Q ss_pred cCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHHHcCCCceeeeeEEe--CCCcEEEEEE
Q 005225 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVD--TRDGIRLVFQ 211 (707)
Q Consensus 134 ~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~~~GYf~a~v~~~v~--~~~~v~l~~~ 211 (707)
-.+.+|++|.|.| -+.-....+++.+.+++ .+++|..|+..+|++|+++|++.|||+ .|.+.+. .++.+.|+|.
T Consensus 145 ~~~~~vs~v~~~~--~~~~~~~~~e~~l~~~i-~~kpG~v~trsqLq~dv~~I~~tG~F~-~V~~~v~~~~dg~v~V~~~ 220 (796)
T PLN03138 145 FKRYKVSEIEFFD--RRRNTTVGTEDSFFEMV-TLRPGGVYTKAQLQKELETLASCGMFE-KVDLEGKTKPDGTLGLTIS 220 (796)
T ss_pred cceEEEEEEEEec--cccCCCcchHHHHHHHH-hcCCCCccCHHHHHHHHHHHHhcCCce-EEEEEEEeCCCCeEEEEEE
Confidence 3567899999987 22222233444444455 699999999999999999999999999 8887653 5677999999
Q ss_pred EeeCCc--eEEEE------------EecCcCCChhHHHHHhcCCC-----------------------------CcccCH
Q 005225 212 VEPNQE--FHGLV------------CEGANVLPTKFVEDAFRDGY-----------------------------GKVVNI 248 (707)
Q Consensus 212 V~EG~~--~~~I~------------~~G~~~~~~~~L~~~~~~~~-----------------------------g~~~~~ 248 (707)
|+||+. +++|+ |+||+.+++++|++.|..++ ...|+.
T Consensus 221 i~Eg~~~~I~~I~~i~~~~~~~~~~~~GN~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~gklN~ 300 (796)
T PLN03138 221 FTESTWQSADSFRCINVGLMSQSKPIEMDEDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRDQGKVSA 300 (796)
T ss_pred EEeCCceeeeeeeecccccccccceeeCCcccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhccCCcCCH
Confidence 999987 44888 99999999999888876643 125999
Q ss_pred HHHHHHHHHHHHHHHhCCc-eeEeeeEEEeeCcEEEEEEeeeEEEEEEEEeccccCCCCCCCCCCHHHHHhhcc--cCCC
Q 005225 249 RRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--TKKG 325 (707)
Q Consensus 249 ~~l~~~~~~I~~~y~~~GY-~a~V~~~~~~~~~~v~i~I~eg~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~--l~~G 325 (707)
++|++++++|+++|.++|| +++|.+....+++.|++.|.||.+..|+|++.+ +.|+.+.++|++.+|+|+|+ +++|
T Consensus 301 e~Lq~die~I~~~Y~d~GYafa~V~~~~~id~g~Vtl~V~EG~i~~I~V~~~d-rig~~i~GNTrD~VIRREL~~~lkeG 379 (796)
T PLN03138 301 RLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTNEVVCEVVEGDITKVVIQFQD-KLGNVVEGNTQLPIIDRELPKQLRQG 379 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEecccccCCceEEEEEecccEEEEEEEecc-cccccccCCccCeEEeeecccccCCC
Confidence 9999999999999999999 799998776677889999999999999987544 23433345689999999997 5999
Q ss_pred CccchhhHHHHHHHHHhCCCCccceeeeccC-CCCCeEEEEEEEEE--cCCceEEEeeeeecCcc--CC-CccceEEEEE
Q 005225 326 QVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GDTGKVDLIMNVVE--RPSGGFSAGGGISSGIT--SG-PLSGLIGSFA 399 (707)
Q Consensus 326 ~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~-~~~~~vdl~i~V~E--~~~~~~~~g~gyss~~~--~g-~~~g~~~~~~ 399 (707)
++||..++++++++|+++|||++|++.+.|. ..++.++|.|+|+| .++..++++++|+.... .+ ...++.+.++
T Consensus 380 d~fN~~~l~~slqRL~~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~Gtvs 459 (796)
T PLN03138 380 HIFNIEAGKQALRNINSLALFSNIEVNPRPDEKNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPGGTVS 459 (796)
T ss_pred cccCHHHHHHHHHHHHhCCCCceeEEEeccCCCCCCeEEEEEEEEEccCCceeEecccccccccCCCCccccccceeEEE
Confidence 9999999999999999999999999999886 46899999999999 45555666666643210 00 1146688999
Q ss_pred EEecCCCCCCeEEEEEEEEc-----eeeEEEEEEEeeccccC--CCCceEEEEEEEeeecCCccccCC--CCCCCceEEE
Q 005225 400 YSHRNVFGRNQKLNISLERG-----QIDSIFRINYTDPWIEG--DDKRTSRTIMVQNSRTPGTHVHGN--QPDNSSLTIG 470 (707)
Q Consensus 400 ~~~~NlfG~G~~l~l~~~~g-----~~~~~~~l~y~~P~~~~--~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 470 (707)
++++||+|+|+++.++++.+ +....+.++|++||+.+ ++.+.++++++++++..+.++.+. .......+..
T Consensus 460 ~~~~NL~G~g~~L~~~v~~s~~~~g~~d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~~~~~~ 539 (796)
T PLN03138 460 FEHRNIQGLNRSILGSVTSSNLLNPQDDLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPPIWVD 539 (796)
T ss_pred EeccccccccceEEEEEEeecccCCccceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCCcceEe
Confidence 99999999999999999984 56778999999999988 455689999999887655444332 1223345688
Q ss_pred EEEEEEEEEeeCCCCeEEEEEEEEEEEEeecCCCCccc-------------------------ccccCCceeEeeeccCc
Q 005225 471 RVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPII-------------------------KDFYSSPLTASGKTNDE 525 (707)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~~d~~D~ 525 (707)
+.++++.+++++++.+.+++++.++.+...+..+.... .+.+...+.+++|++|+
T Consensus 540 R~G~~~~~~rp~~~~~~~s~g~~~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd~~~~ 619 (796)
T PLN03138 540 RAGFKANITENFTRQSKFTYGLVVEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRDNTKF 619 (796)
T ss_pred ecccceEeecccCCCCceEEEEEEEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEeccCCC
Confidence 99999999999998888899999999988765543221 11233456778888998
Q ss_pred ceeeeeeeeecCCCCCCCceEEEEEEeccccCCCcceEEEEEEEEEEEEEec----------CceEEEEEEeeeeecCCC
Q 005225 526 MLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIG----------PARLLLSLSGGHVVGNFS 595 (707)
Q Consensus 526 ~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l~----------~~~l~~~~~~G~~~g~lp 595 (707)
+..|+ .|. .+.++.|++++....+..|+|+.+++++|+|+. +..|++++++|++.|++|
T Consensus 620 ~~~pt-------~G~----~~~~~~EQ~lpvg~~~~~fNR~~~~~s~fipv~~~~~~~~~~~Pq~la~~~~aG~~~GdLP 688 (796)
T PLN03138 620 VNGAV-------VGD----RHIFQVDQGLGIGSKFPFFNRHQLTVTKFIQLNKVEKGAGKPPPPVLVLHGHYGGCVGDLP 688 (796)
T ss_pred CCCCC-------ccc----eEEEEeeeeccccCCCCceEEEEEEEEEEEeeccccccccCCCCcEEEEEEeccceecCCC
Confidence 88887 443 268999999998777888999999999999982 347999999999999999
Q ss_pred cccceeeCCCCCccCCCCCccccceeEEEEeEEEEEecCCceeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEE
Q 005225 596 PHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFG 675 (707)
Q Consensus 596 ~~e~F~lGG~~svRGy~~~~lg~G~~~~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~G 675 (707)
++|.|.|||.+|||||.+++++.|++++.+++|||+|| .++.+++|+|+|+.|....+++++|..++-++...+|+|+|
T Consensus 689 pYEAF~LGG~nSVRGY~eG~lg~gRs~l~asaEyRfPi-~~~~g~~F~D~GsdLgS~~~V~G~P~~~r~kpG~G~syG~G 767 (796)
T PLN03138 689 SYDAFTLGGPYSVRGYNMGELGAARNILEVAAELRIPV-RNTHVYAFAEHGTDLGSSKDVKGNPTEFFRRAGHGSSYGVG 767 (796)
T ss_pred cHHhcccCCCCcccCcccCcccccceeEEEEEEEEeee-ccceEEEEEEeccccCCCCCCCCCchhhccCCCCCccccee
Confidence 99999999999999999999998999999999999999 45789999999999999999999998777777889999999
Q ss_pred EEEEcCcccEEEEEEEeCC-CCcEEEEEeeec
Q 005225 676 IRVDSPLGPLRLEYAFNDK-QAKRFHFGVGYR 706 (707)
Q Consensus 676 lR~~tp~Gpirld~a~~~~-~~~~f~FsiG~~ 706 (707)
+| +||||+|||++++ +..+|||+||.|
T Consensus 768 vr----lGpiR~dYa~~~~~G~~r~hfg~Ger 795 (796)
T PLN03138 768 VK----LGLVRAEYAVDHNAGTGAIFFRFGER 795 (796)
T ss_pred eE----ecceeEEEeecCCCCCceEEEecccc
Confidence 99 8999999999854 789999999987
No 2
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=100.00 E-value=2.9e-67 Score=608.39 Aligned_cols=540 Identities=24% Similarity=0.389 Sum_probs=437.5
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHHHcCCCceeeeeEEeCCCcEEEEEEEeeCCc
Q 005225 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQE 217 (707)
Q Consensus 138 ~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~~~GYf~a~v~~~v~~~~~v~l~~~V~EG~~ 217 (707)
.|++|.+.|. +..|+..+.+++ .+++|..++..++++|+++|++.|||..+-....+.+.+++|+|+|+|+|.
T Consensus 109 l~~e~~~~~~------~~~~~~~~~~~~-~~~~G~~~t~~~~~~d~~~i~~tG~F~~V~~~~~~~~~Gv~v~~~V~enP~ 181 (718)
T TIGR00992 109 LQKELEVLAT------CGMFEKVDYEGK-TTQDGRLGTTISFAESVWAIADRFRCINVGLMPQSKPLEMDVDMEVKEKPE 181 (718)
T ss_pred eeeeeeeecC------cHHHHHHHhhcc-ccCCCCcccHHHHHHHHHHHHHcEEeeeeEEeeccCCCceEEEEEEecCCE
Confidence 8999999993 234776666666 699999999999999999999999998655444457788999999999999
Q ss_pred eEE-EEEec--------CcCCChhHHHHHhcCCCC-cccCHHHHHHHHHHHHHHHHhCCc-eeEeeeEEEeeCcEEEEEE
Q 005225 218 FHG-LVCEG--------ANVLPTKFVEDAFRDGYG-KVVNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQV 286 (707)
Q Consensus 218 ~~~-I~~~G--------~~~~~~~~L~~~~~~~~g-~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~~~~~~~~v~i~I 286 (707)
++. |+++| +..++.+.|.+++..+.| ++++...|.++.++|+++|+++|| +|+|.......++.|+|.|
T Consensus 182 ~~~~v~~~g~~~~~~~~~~~lp~~~l~e~~~~~~G~~~ln~~~L~~~~~~I~~~Y~~~GY~~A~V~~~~~~~~~~V~l~V 261 (718)
T TIGR00992 182 FTRRLEIRYKRRIAEARPCLLPQEVVDETFGMLYGQGIVSARLLQEIRDRVQEWYHNEGYACAQVVNFGNLNTDEVVCEV 261 (718)
T ss_pred EEEEEEEeecccccccccccCCHHHHHHHhccccCCeecCHHHHHHHHHHHHHHHHHCCceeEEEeccCcCCCCEEEEEE
Confidence 997 99974 456888999999999999 999999999999999999999999 7988765433444899999
Q ss_pred eeeEEEEEEEEeccccCCCCCCCCCCHHHHHhhcc--cCCCCccchhhHHHHHHHHHhCCCCccceeeeccCC-CCCeEE
Q 005225 287 AEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--TKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAG-DTGKVD 363 (707)
Q Consensus 287 ~eg~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~--l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~~-~~~~vd 363 (707)
.||+|.+|.|+..+ ..||+..+++++.+|+|+++ +++|++|+.++|++++++|+++|+|++|.+.+.|.. +++.++
T Consensus 262 ~EG~i~~I~V~~i~-~~Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~~Le~~~~rL~~lg~F~~V~V~~~p~~~~~g~v~ 340 (718)
T TIGR00992 262 VEGDITNLQIQFFD-KLGNVVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTALQNINSLGLFSNIEVNPRPDEMNEGEII 340 (718)
T ss_pred eccceeEEEEEEec-ccCccccCccchHHHHHHHHhccCCCCcCCHHHHHHHHHHHHcCCCcccceeeccCCCCCCCeEE
Confidence 99999999886322 22663335789999999999 999999999999999999999999999999988875 789999
Q ss_pred EEEEEEEcCCc--------eEEEeee---eecCccCCCccceEEEEEEEecCCCCCCeEEEEEEEEc-----eeeEEEEE
Q 005225 364 LIMNVVERPSG--------GFSAGGG---ISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERG-----QIDSIFRI 427 (707)
Q Consensus 364 l~i~V~E~~~~--------~~~~g~g---yss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g-----~~~~~~~l 427 (707)
|.|+|+|++++ ++.+|+| |+++ .|+.+.++|+++||||.|++|+++++.+ +..+.+.+
T Consensus 341 V~V~V~E~~~~s~~~~~~~s~~~G~Gg~~~ss~------~G~~g~i~~~~rNl~G~g~~l~~~~~~s~~~~~~~~~~~~l 414 (718)
T TIGR00992 341 VEIKLKELEQKSAEVSTEWSIVPGRGGRPTLAS------SQPGGTITFEHRNLQGLNRSLGGSVTTSNFLNPQDDLLFKV 414 (718)
T ss_pred EEEEEEECCCCceeeeccccccccCCCcccccc------cceeEEeeEEeccCcccCcEEEEEEEeccccCCCcceEEEE
Confidence 99999999998 6666777 6664 7899999999999999999999999998 77889999
Q ss_pred EEeeccccCC--CCceEEEEEEEeeecCCccccCC--CCCCCceEEEEEEEEEEEEeeCCCCeEEEEEE------EEEEE
Q 005225 428 NYTDPWIEGD--DKRTSRTIMVQNSRTPGTHVHGN--QPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGL------IFQHS 497 (707)
Q Consensus 428 ~y~~P~~~~~--~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~------~~~~~ 497 (707)
+|++||+.+. +.+.++++++++++.....+... ......|+..+.++++.+++++++++.+..+| .++..
T Consensus 415 sy~~P~i~~~~~p~~~s~~~~~f~~~~~~~~~~~~~~~~~~~~y~~~r~G~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~ 494 (718)
T TIGR00992 415 EYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSIWVDRAGVKANITENFARQSKFTYGLVMEEIFTRDES 494 (718)
T ss_pred EEecCccCCCCCCccceEEEEEEEeccccccccCCcccccCCCceEEEEEEEEEEeeccCcccccccCeEEEEEeeeeee
Confidence 9999999876 55678888887765432211110 11234588899999999999998776555444 34333
Q ss_pred EeecCCCC-------------cc------cccccCCceeEeeeccCcceeeeeeeeecCCCCCCCceEEEEEEeccccCC
Q 005225 498 GARDEKGN-------------PI------IKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWP 558 (707)
Q Consensus 498 ~~~~~~~~-------------~~------~~~~~~~~l~~~~d~~D~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~ 558 (707)
...+..+. +. ......+.++++||++|+.++|+. |.+ +.++.+++.+..+
T Consensus 495 ~~~~~~g~~~~~~~~~~~~g~~~t~s~~~~~~l~~l~~~~t~D~rDn~l~Pt~-------G~~----~~~~~e~~~~~g~ 563 (718)
T TIGR00992 495 RHINANGQRSLPSGPISADGPPTTLSGTGVDRMAFLQANITRDNTNFVNGPTV-------GSR----VRFQVDQGLGVGS 563 (718)
T ss_pred eeccccCccccccccccccCCcceecCCCccceEEEEEEEEEecCCCCCCCCc-------ccE----EEEEEEeccCcCC
Confidence 32222111 00 012234567899999999999984 422 5777788776443
Q ss_pred CcceEEEEEEEEEEEEEecC----------ceEEEEEEeeeeecCCCcccceeeCCCCCccCCCCCccccceeEEEEeEE
Q 005225 559 EWLFFNRVNARARKGVEIGP----------ARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGE 628 (707)
Q Consensus 559 ~~~~f~k~~~~~~~y~~l~~----------~~l~~~~~~G~~~g~lp~~e~F~lGG~~svRGy~~~~lg~G~~~~~~s~E 628 (707)
....|+|+.+++++|+|+.. .+|++++++|++.|++|++++|++||.+|||||.+++++||+.++.+++|
T Consensus 564 ~~~~f~r~~~~~~~y~pl~~~~~~~~~~~~~vla~r~~~G~~~gdlP~~e~F~lGG~~SVRGY~~~~lGpGr~~~~~s~E 643 (718)
T TIGR00992 564 GFPFFNRHQLTYTKFIQLNWVELGAGKSPPPVLVLHGHYGGCVGDLPSYDAFILGGPYSVRGYNMGELGAARNIFEATAE 643 (718)
T ss_pred CCceEEEEEEEEEEEEeccccccccccCCCcEEEEEEEeeeEcCCCCchhceecCCCCcccCccCCcccccceeeEEEEE
Confidence 34479999999999999852 37999999999889999999999999999999999999999999999999
Q ss_pred EEEecCCceeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCcccEEEEEEEeCCCCcEEEEEeeec
Q 005225 629 ISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDKQAKRFHFGVGYR 706 (707)
Q Consensus 629 lr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~GlR~~tp~Gpirld~a~~~~~~~~f~FsiG~~ 706 (707)
||||+...| +++|+|+|++|+...++++++...+.++.+++|+|+|+||.||+||||||| .++..+|||+||.+
T Consensus 644 ~r~Pi~~~~-g~~F~D~G~~~~s~~~~~g~~~~~~~~~~~~~s~GvGvR~~sPiGPiRlD~---~~~~~rf~F~iG~~ 717 (718)
T TIGR00992 644 IRIPIKATH-VYAFVEHGSDLGSSKDVKGNPTIVYRRPGQGSSYGAGVKLGLVRAEYAVDH---NEGTGAIFFRFGER 717 (718)
T ss_pred EEEEecCcc-EEEEEecccccCcccccCCCccccccCCCCccceeEEEEEecCcccEEEEe---cCCCcEEEEecccc
Confidence 999999888 999999999998865544433212223467899999999999999999999 35568999999975
No 3
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.7e-67 Score=602.39 Aligned_cols=541 Identities=25% Similarity=0.388 Sum_probs=451.8
Q ss_pred cccccCcceEEEEEEEeCCCCccChhhHHHHHHHHhh----hcCCCCccCHHHHHHHHHHHH----HcCCCceeeeeE-E
Q 005225 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALK----ACRANSALTVREVQEDVHRII----DSGYFCSCMPVA-V 200 (707)
Q Consensus 130 ~~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~----~~~~g~~~~~~~l~~d~~~l~----~~GYf~a~v~~~-v 200 (707)
++++|++..|+.|.|.| |+.+++.+|+..+..+.. ++..++.|++.+++.|...|. ++||.+..|... +
T Consensus 165 ~i~eG~~~~i~~I~~~G--n~~~s~~~l~~~~~~k~~~~~~~~~~~~~y~~~~l~~D~e~lr~~Y~n~Gy~d~~v~s~~~ 242 (766)
T COG4775 165 VINEGPSAKIKQINFEG--NTAFSDSDLESVVQTKESNIWGWLTRLDKYDPDKLEADLETLRSFYLNRGYADFRVSSTQV 242 (766)
T ss_pred EeCCCCccceeeeEEec--cccccchhhhhheeeccceeEEEEecccccChhhhhccHHHHHHHHHhCceEEEEEeeeee
Confidence 78899999999999999 999999999987753322 244566899999999999994 899999999743 2
Q ss_pred ---eCCCcEEEEEEEeeCCceE--EEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-eeEeeeE
Q 005225 201 ---DTRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV 274 (707)
Q Consensus 201 ---~~~~~v~l~~~V~EG~~~~--~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~ 274 (707)
++++.+.|++.|+||++|+ +|.++|+...+.++|++.+.+++|++|+.++|+++.++|.++|.+.|| +++|.+.
T Consensus 243 ~~~~~k~~~~vt~~V~EG~~y~~~~i~i~g~~~~~~~el~~~~~~~~g~~fn~~~i~~~~~~I~~~~~~~GY~~a~V~p~ 322 (766)
T COG4775 243 SLDPDKKGVTVTYTVKEGPQYKFGSVLIEGNLAGVSEELEKLLKVKPGKLFNRKKIEDDADKIKERYARYGYAFANVSPQ 322 (766)
T ss_pred cccCCCccEEEEEEEccCCceEEEEEEEEcCccCcHHHHHHhhccCCCceEcHHHHHHHHHHHHHHHHhcCceeeEeeee
Confidence 2567899999999999987 899999999899999999999999999999999999999999999999 7999766
Q ss_pred EEeeC--cE--EEEEEeee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCc
Q 005225 275 EILSG--GI--IRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIME 347 (707)
Q Consensus 275 ~~~~~--~~--v~i~I~eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~ 347 (707)
...++ ++ |.+.|.+| +|++|.|. || .+|++++|+|+|+++||++||..+++++.++|.++|||+
T Consensus 323 ~~~n~~~~tv~v~~~V~~g~~~~V~~i~i~------gn---~rT~D~VIrRE~~~~eGd~fn~~~v~~~~~rL~~lgyF~ 393 (766)
T COG4775 323 PDANDENKTVDVVFRVDEGDRVYVRRIRIR------GN---TRTKDYVIRREMRLKEGDVFNRKLVQRGKRRLRRLGYFE 393 (766)
T ss_pred cccCCCCcEEEEEEEEEcCCceeeeeeeec------CC---CccccHHhhhhhhcCCcchhhHHHHHHHHHHHHhcCCce
Confidence 55443 33 78888887 89999999 99 599999999999999999999999999999999999999
Q ss_pred cceeeeccCCCCCeEEEEEEEEEcCCceEEEeeeeecCccCCCccceEEEEEEEecCCCCCCeEEEEEEEEceeeEEEEE
Q 005225 348 DVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRI 427 (707)
Q Consensus 348 ~V~i~~~~~~~~~~vdl~i~V~E~~~~~~~~g~gyss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g~~~~~~~l 427 (707)
+|+|...+...++.+||.++|+|+.++++.+|+||++. .|+.+.++++.+|+||.|+.+++++..|.+.+++.+
T Consensus 394 ~V~i~~~~~~~~~~vdvvv~VkE~~Tgsi~~G~Gy~s~------~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~~~~~~l 467 (766)
T COG4775 394 SVNIDTAPGSGSDQVDVVVDVKERSTGSINFGLGYGSD------SGLSGFASLSERNFLGTGQSLSLNANLGDKQTSYSL 467 (766)
T ss_pred eeEEEeccCCCCCeEEEEEEEEecCceeEEecccccCC------CceEEEEEEEEeecCccccEEEEEEEeccceEEEEE
Confidence 99999998866669999999999999999999999987 789999999999999999999999999999999999
Q ss_pred EEeeccccCCCCceEEEEEEEeeecCCccccCCCCCCCceEEEEEEEEEEEEeeCCCCeEEEEEEEEEEEEeecCCCCc-
Q 005225 428 NYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNP- 506 (707)
Q Consensus 428 ~y~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~~- 506 (707)
+|+.||+... +++++++++++.+..... ......|+..+.|+++.+++|+++++++.+++.+++..+......+
T Consensus 468 ~ft~P~f~~~--~~slg~~~f~~~~~~~~~---~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~ 542 (766)
T COG4775 468 SFTDPYFLDD--RVSLGFNLFSNRYDTFDA---DTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPP 542 (766)
T ss_pred EEecccccCC--CceeEEEeEeeeeccccc---ccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCcc
Confidence 9999998765 478888888776531000 1112368899999999999999999999999999998876332111
Q ss_pred ------cc------ccccCCceeEeeeccCcceeeeeeeeecCCCCCCCceEEEEEEeccccCCCcceEEEEEEEEEEEE
Q 005225 507 ------II------KDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGV 574 (707)
Q Consensus 507 ------~~------~~~~~~~l~~~~d~~D~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~ 574 (707)
.. ......+++++||++|+.++|+.|.. +....+.+.+ +++..|+|+++++++|+
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~s~~~tyD~rD~~~~Pt~G~~-----------~~~~~e~~~~--Ggd~~~~K~~~~~~~Y~ 609 (766)
T COG4775 543 DEYASLGVKLQGGKSDLSSLSLGWTYDTRDNALFPTKGSY-----------LSLTQEVAGL--GGDIKYYKLELDGSKYY 609 (766)
T ss_pred ccccccccccccCcceeEEEEEeEEEcCCCCcCCCCCCeE-----------EeeeeEEecc--CCcceEEEEEEEEEEEE
Confidence 00 11233577899999999999995432 3444455544 47899999999999999
Q ss_pred EecCc--eEEEEEEeeeee--c--CCCcccceeeCCCCCccCCCCCcccc---------ceeEEEEeEEEEEecCC----
Q 005225 575 EIGPA--RLLLSLSGGHVV--G--NFSPHEAFAIGGTNSVRGYEEGAVGS---------GRSYVVGSGEISFPMLG---- 635 (707)
Q Consensus 575 ~l~~~--~l~~~~~~G~~~--g--~lp~~e~F~lGG~~svRGy~~~~lg~---------G~~~~~~s~Elr~pl~~---- 635 (707)
|+... ++.++..+|+.. | .+|++|+|++||.+|||||+.+.+|| |+.++.+++||+||++.
T Consensus 610 ~l~~~~~~l~~~~~~g~~~~~g~~~~p~~e~F~~GG~~svRGf~~~~igp~~~~~~~~GG~~~~~~S~El~fPl~~~~~~ 689 (766)
T COG4775 610 PLTDYIFTLSLRGEVGYGKGYGTKLLPIYERFYLGGSNSVRGFESGGLGPKDGYTDALGGTSYFVASAELRFPLPKVIGS 689 (766)
T ss_pred EcccccEEEEEEEEEEEeeccCCcccccccceeeCCCccccceecCCcCCccccccccCceEEEEEEEEEEeecCCCCCc
Confidence 99865 456666777654 3 48999999999999999999999998 99999999999999986
Q ss_pred ceeEEEEEEecccCCCCCCCCCCCCCC-CCCCCCceeeEEEEEEEcCcccEEEEEEEeC-----CCCcEEEEEeeec
Q 005225 636 PVEGVIFSDYGTDLGSGPSVPGDPAGA-RLKPGSGYGYGFGIRVDSPLGPLRLEYAFND-----KQAKRFHFGVGYR 706 (707)
Q Consensus 636 ~l~~~~F~D~G~v~~~~~~~~~~~~~~-~~~~~~~~s~G~GlR~~tp~Gpirld~a~~~-----~~~~~f~FsiG~~ 706 (707)
.+++++|+|+|.+|+...+ +.....+ .....++.|+|+||+|.+|+||||+|||+|. |...+|||+||.+
T Consensus 690 ~~r~~lF~D~G~v~~~~~~-~~~~~~~~~~~~~~r~S~Gvgl~w~sP~gPlr~d~a~pi~~~~~D~~q~F~F~iG~~ 765 (766)
T COG4775 690 GVRGALFFDAGSVWNTGTD-PSTVRNFYGSGSELRASAGVGLRWASPLGPLRFDYAFPIKKKEGDDTQRFQFGLGTR 765 (766)
T ss_pred ceEEEEEEEcccccccCcc-cccccCCcCcCcceeEEeeeeEEEecCCCcEEEEeecccccCCCCcceeEEEEcccc
Confidence 2789999999999996511 1111111 1111368899999999999999999999885 2456999999975
No 4
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=100.00 E-value=5.1e-64 Score=599.40 Aligned_cols=540 Identities=18% Similarity=0.234 Sum_probs=433.1
Q ss_pred cccccCcceEEEEEEEeCCCCccChhhHHHHHHHHhh----hcCCCCccCHHHHHHHHHHHH----HcCCCceeeeeEE-
Q 005225 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALK----ACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV- 200 (707)
Q Consensus 130 ~~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~----~~~~g~~~~~~~l~~d~~~l~----~~GYf~a~v~~~v- 200 (707)
.|++|++++|++|.|+| |+.+++++|++.+..+.. .+..++.|+++++++|+++|. ++||++++|...+
T Consensus 168 ~i~EG~~~~I~~I~f~G--N~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~Y~~~Gy~~a~V~~~~~ 245 (803)
T PRK11067 168 VFTEGVSAKIQQINIVG--NHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQV 245 (803)
T ss_pred EEecCCeEEEEEEEEEC--CCCcCHHHHHHHhcCCCCcchhhhccCCccCHHHHhhhHHHHHHHHHHCCCceEEecCcEE
Confidence 66778899999999999 999999999987621100 011458899999999999995 7899999997532
Q ss_pred --e-CCCcEEEEEEEeeCCceE--EEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-eeEeeeE
Q 005225 201 --D-TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV 274 (707)
Q Consensus 201 --~-~~~~v~l~~~V~EG~~~~--~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~ 274 (707)
+ +++.+.|+|.|+||++++ +|.|.|+..++.++|++.+.+++|++|+...++++.++|.++|+++|| +++|.+.
T Consensus 246 ~~~~~~~~v~i~~~I~eG~~~~i~~i~~~G~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~~~~~GY~~a~v~~~ 325 (803)
T PRK11067 246 SLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQTQ 325 (803)
T ss_pred EEcCCCceEEEEEEEeeCCcEEEEEEEEEecCCCCHHHHHHhhcCCCCceeCHHHHHHHHHHHHHHHHhCCCCcceeeec
Confidence 2 344699999999999976 899999998888999999999999999999999999999999999999 5888543
Q ss_pred EEe--eCcE--EEEEEeee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCc
Q 005225 275 EIL--SGGI--IRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIME 347 (707)
Q Consensus 275 ~~~--~~~~--v~i~I~eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~ 347 (707)
... +++. |++.|+|| +|++|.|. |+ .++++++|++++.+++|++|+.++|++++++|.++|||+
T Consensus 326 ~~~~~~~~~v~i~~~v~eG~~y~ig~I~i~------Gn---~~~~~~~l~r~l~~~~G~~~~~~~l~~~~~~L~~~g~F~ 396 (803)
T PRK11067 326 PEINDADKTVKLHVNVDAGNRFYVRKIRFE------GN---DTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFE 396 (803)
T ss_pred cccCCCCCEEEEEEEEeeCCeEEEEEEEEE------CC---ccccchhhhhheeccccccCCHHHHHHHHHHHHhcCCcc
Confidence 222 2333 78899998 69999999 98 489999999999999999999999999999999999999
Q ss_pred cceeeeccC-CCCCeEEEEEEEEEcCCceEEEeeeeecCccCCCccceEEEEEEEecCCCCCCeEEEEEEEEceeeEEEE
Q 005225 348 DVSIIPQPA-GDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFR 426 (707)
Q Consensus 348 ~V~i~~~~~-~~~~~vdl~i~V~E~~~~~~~~g~gyss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g~~~~~~~ 426 (707)
.|++.+.+. ..++.++|.+.|+|++++.+++|+||+++ .|+++.++++++|+||.|++++++++.+...+.+.
T Consensus 397 ~V~~~~~~~~~~~~~v~l~v~v~e~~~~~~~~g~gy~s~------~g~~~~~~~~~~N~~G~G~~l~l~~~~s~~~~~~~ 470 (803)
T PRK11067 397 TVDVDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTE------SGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAE 470 (803)
T ss_pred cCccccccCCCCCCeEEEEEEEEEccCCcEEEEeeecCc------CCEEEEEEEEecccCCcCcEEEEEEEeccceEEEE
Confidence 999887654 34578999999999999999999999986 78899999999999999999999999998888899
Q ss_pred EEEeeccccCCCCceEEEEEEEeeecCCccccCCCCCCCceEEEEEEEEEEEEeeCCCCeEEEEEEEEEEEEeecCCCCc
Q 005225 427 INYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNP 506 (707)
Q Consensus 427 l~y~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 506 (707)
++|+.||+...+ ++++.++++..... .......|+.++.++.+.+++++.+++++.+++.+++.++.+.....
T Consensus 471 l~~~~P~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~y~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~ 543 (803)
T PRK11067 471 LSVTDPYFTVDG--VSLGGRIFYNDFEA-----DDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQV 543 (803)
T ss_pred EEEeCCcCcCCC--ceEEEEEEEEeccc-----cccccccceeeEEEEEEEEEEEecCceEEEEEEEEEEEEeecCCcch
Confidence 999999987654 45655555443321 01123458888899999999999999999999999988765421100
Q ss_pred c-------------------c-ccccCCceeEeeeccCcceeeeeeeeecCCCCCCCceEEEEEEeccccCCCcceEEEE
Q 005225 507 I-------------------I-KDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRV 566 (707)
Q Consensus 507 ~-------------------~-~~~~~~~l~~~~d~~D~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~ 566 (707)
. . ......+++++||++|+.++|+.|.. +.+..+.+.+ +++..|.|+
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~~~~Pt~G~~-----------~~~~~~~~~~--gs~~~f~k~ 610 (803)
T PRK11067 544 AMWRYLYSMGENPSSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNR-----------VNLTGKVTIP--GSDNEYYKV 610 (803)
T ss_pred hHHHHHHHcCCccccccccccceEEEEEEEEEEEecCcCCCCCCCCee-----------EEEEEEEEee--cccceEEEE
Confidence 0 0 01224567788999999999985432 2333333322 467899999
Q ss_pred EEEEEEEEEecC-c--eEEEEEEeeeeec----CCCcccceeeCCCCCccCCCCCcccc---------------------
Q 005225 567 NARARKGVEIGP-A--RLLLSLSGGHVVG----NFSPHEAFAIGGTNSVRGYEEGAVGS--------------------- 618 (707)
Q Consensus 567 ~~~~~~y~~l~~-~--~l~~~~~~G~~~g----~lp~~e~F~lGG~~svRGy~~~~lg~--------------------- 618 (707)
.+++++|+|++. + .+++++.+|++.+ ++|++++|++||.++||||..+++||
T Consensus 611 ~~~~~~y~~l~~~~~~~l~~r~~~G~~~~~~~~~lP~~erF~lGG~~svRGy~~~siGp~~~~~~~~~~~~~~~~~~~~~ 690 (803)
T PRK11067 611 TLDTAQYVPLDDDHKWVLLGRGRLGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNYTQDGAKDLC 690 (803)
T ss_pred EEEEEEEEEecCCCcEEEEEEEEeeeeecCCCCCCChhheeccCCCCcCCcccCCCcCCccccccccccccccccccccC
Confidence 999999999984 2 5667777776543 59999999999999999998776654
Q ss_pred -------ceeEEEEeEEEEEecC-------CceeEEEEEEecccCCCCCCCCC-----CCCCCCCCCCCceeeEEEEEEE
Q 005225 619 -------GRSYVVGSGEISFPML-------GPVEGVIFSDYGTDLGSGPSVPG-----DPAGARLKPGSGYGYGFGIRVD 679 (707)
Q Consensus 619 -------G~~~~~~s~Elr~pl~-------~~l~~~~F~D~G~v~~~~~~~~~-----~~~~~~~~~~~~~s~G~GlR~~ 679 (707)
|+.++.+++|||+|++ .+|++++|+|+|++|+...+... ...++.-..++++|+|+|+||.
T Consensus 691 ~~~~~iGG~~~~~~s~E~~~p~~~~~~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~G~G~r~~ 770 (803)
T PRK11067 691 KSDDAVGGNAMAVASLELITPTPFISDKYANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWM 770 (803)
T ss_pred CCCCCCCCeEEEEEeEEEEEeCCccccccCCCEEEEEEEEeeecccCCcccccccccccccCcCCCCcEEEEEeEEEEEe
Confidence 7899999999999953 47999999999999986321000 0000000125889999999999
Q ss_pred cCcccEEEEEEEeCC-----CCcEEEEEeeec
Q 005225 680 SPLGPLRLEYAFNDK-----QAKRFHFGVGYR 706 (707)
Q Consensus 680 tp~Gpirld~a~~~~-----~~~~f~FsiG~~ 706 (707)
||+||||||||+|.+ ...+|||+||..
T Consensus 771 sPiGPirld~a~pl~~~~~d~~~~~~fsiG~~ 802 (803)
T PRK11067 771 SPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKT 802 (803)
T ss_pred CCCCCeEEEEEEeCCCCCCCceeEEEEecccc
Confidence 999999999999964 358999999974
No 5
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00 E-value=2.2e-60 Score=565.31 Aligned_cols=537 Identities=22% Similarity=0.335 Sum_probs=441.4
Q ss_pred cccccCcceEEEEEEEeCCCCccChhhHHHHHHHHh----hhcCCCCccCHHHHHHHHHHHH----HcCCCceeeee-EE
Q 005225 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTAL----KACRANSALTVREVQEDVHRII----DSGYFCSCMPV-AV 200 (707)
Q Consensus 130 ~~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~----~~~~~g~~~~~~~l~~d~~~l~----~~GYf~a~v~~-~v 200 (707)
.|+++++.+|.+|.|+| |+.+++++|++.+.... ..++.++.|+++.+++|+++|. ++||++++|.. .+
T Consensus 143 ~v~eg~~~~i~~i~~~G--n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~~ 220 (741)
T TIGR03303 143 NIKEGKKAKIKKINFVG--NKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQV 220 (741)
T ss_pred EEecCCEEEEEEEEEEC--CCcCCHHHHHHHHhcCcchhHHhccCCCeECHHHHhhhHHHHHHHHHhCCcEEEEEcCCEE
Confidence 56667777999999999 99999999998773221 1244579999999999999994 89999999973 33
Q ss_pred --e-CCCcEEEEEEEeeCCceE--EEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-eeEeeeE
Q 005225 201 --D-TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV 274 (707)
Q Consensus 201 --~-~~~~v~l~~~V~EG~~~~--~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~ 274 (707)
+ +++.+.|+|.|+||++++ +|.|.|+..++.++|.+.+.+++|++|+..++++++++|.++|+++|| +++|.+.
T Consensus 221 ~~~~~~~~~~i~~~v~eG~~~~i~~i~i~g~~~~~~~~l~~~~~~~~G~~~~~~~~~~~~~~l~~~y~~~Gy~~~~v~~~ 300 (741)
T TIGR03303 221 SITPDKKGVYITYNIKEGEQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPR 300 (741)
T ss_pred EECCCCCEEEEEEEeccCCCEEEEeEEEEeccCCcHHHHHHhhcCCCCCeeCHHHHHHHHHHHHHHHHhcCCceeEEEec
Confidence 2 456799999999999966 899999999999999999999999999999999999999999999999 6888754
Q ss_pred EEe-e-Cc--EEEEEEeee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCc
Q 005225 275 EIL-S-GG--IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIME 347 (707)
Q Consensus 275 ~~~-~-~~--~v~i~I~eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~ 347 (707)
... . ++ .|++.|+|| +|++|.|. |+ ..+++++|++++.+++|++|+.+++++++++|.++|+|+
T Consensus 301 ~~~~~~~~~v~v~~~v~eg~~~~i~~i~i~------g~---~~t~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~~lg~f~ 371 (741)
T TIGR03303 301 PQINDENKTVDLTFKVDPGKRVYVRRINIS------GN---TRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFE 371 (741)
T ss_pred ceECCCCCEEEEEEEEccCCeEEEEEEEEE------CC---CccccceeehhhccCcccccCHHHHHHHHHHHHhCCCCc
Confidence 432 2 23 388999998 59999999 98 489999999999999999999999999999999999999
Q ss_pred cceeeeccCCCCCeEEEEEEEEEcCCceEEEeeeeecCccCCCccceEEEEEEEecCCCCCCeEEEEEEEEceeeEEEEE
Q 005225 348 DVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRI 427 (707)
Q Consensus 348 ~V~i~~~~~~~~~~vdl~i~V~E~~~~~~~~g~gyss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g~~~~~~~l 427 (707)
.|.+.+.+...++.++|.+.|+|++++.+.+++||++. .++++.+++.++|+||.|+++++++..+...+.+.+
T Consensus 372 ~v~~~~~~~~~~~~~~v~i~v~e~~~~~~~~~~g~~~~------~~~~~~~~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~ 445 (741)
T TIGR03303 372 TVNIETVPVGSPDQVDLNVKVKEQPTGSISFGVGYGSS------SGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSL 445 (741)
T ss_pred eeeeeecCCCCCCEEEEEEEEEEccccEEEEeeeecCC------CceEEEEEEEEecccccccEEEEEEEeccceEEEEE
Confidence 99998877666889999999999999999999999875 788999999999999999999999999988888999
Q ss_pred EEeeccccCCCCceEEEEEEEeeecCCccccCCCCCCCceEEEEEEEEEEEEeeCCCCeEEEEEEEEEEEEeecCCCCc-
Q 005225 428 NYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNP- 506 (707)
Q Consensus 428 ~y~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~~- 506 (707)
+|+.|++.+.+ +.+.+++++.+.... ......|..++.++.+.+++++.+++.+.+++++++.++.+..+..
T Consensus 446 ~~~~P~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (741)
T TIGR03303 446 SFTDPYFTDDG--VSLGFSIFYSETDRN-----YKNFSDYKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKNSSDSDS 518 (741)
T ss_pred EEECCCCcCCC--eEEEEEEEEEEcccc-----cccccCceeEEEEEEEEEEEEecCceEEEEEEEEEEEEEecCCCcch
Confidence 99999988765 556666555543210 0123457778889999999999999999999999988776422111
Q ss_pred ----cc------ccccCCceeEeeeccCcceeeeeeeeecCCCCCCCceEEEEEEeccccCCCcceEEEEEEEEEEEEEe
Q 005225 507 ----II------KDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEI 576 (707)
Q Consensus 507 ----~~------~~~~~~~l~~~~d~~D~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l 576 (707)
.+ ....+..++++||++|+.++|+.|.. +.+..+.+. .+++.+|.|+.+++++|+|+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~d~rD~~~~P~~G~~-----------~~~~~~~~~--~g~~~~f~k~~~~~~~y~~l 585 (741)
T TIGR03303 519 SASYFIKEQGGKFIDSSLSYGWSYDTLDSGYFPTKGSI-----------QRLSQEFAG--PGGDLKYYKLTYDSEYYIPL 585 (741)
T ss_pred hHHHHHHHhCCceEEEEEEEEEEEeCCcCCCCCCCCcE-----------EEEEEEEee--ecCCceEEEEEEEEEEEEEc
Confidence 00 01234567788999999999985533 233334332 24578999999999999999
Q ss_pred cC---ceEEEEEEeeeeec----CCCcccceeeCCCCCccCCCCCcccc-----------ceeEEEEeEEEEEecC----
Q 005225 577 GP---ARLLLSLSGGHVVG----NFSPHEAFAIGGTNSVRGYEEGAVGS-----------GRSYVVGSGEISFPML---- 634 (707)
Q Consensus 577 ~~---~~l~~~~~~G~~~g----~lp~~e~F~lGG~~svRGy~~~~lg~-----------G~~~~~~s~Elr~pl~---- 634 (707)
.+ .+|++++.+|++.+ ++|++++|++||.++||||..++++| |+.++.+++|||+|+.
T Consensus 586 ~~~~~~~l~~~~~~g~~~~~~~~~~p~~e~f~lGG~~svRGy~~~~igp~~~~~~~~~~gG~~~~~~~~Elr~pl~~~~~ 665 (741)
T TIGR03303 586 SKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNGIGPRDINDSGDSIGGNAMATANVELIFPLPFLPE 665 (741)
T ss_pred CCCCcEEEEEEEEeeEEEcCCCCccChhHeEecCCCCcCCCccCCCcCCCccCCCCCCCCceEEEEEEEEEEEcCCCCCc
Confidence 87 47888889988753 69999999999999999999988874 9999999999999995
Q ss_pred -CceeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCcccEEEEEEEeCC-----CCcEEEEEeeec
Q 005225 635 -GPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDK-----QAKRFHFGVGYR 706 (707)
Q Consensus 635 -~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~GlR~~tp~Gpirld~a~~~~-----~~~~f~FsiG~~ 706 (707)
.+|++++|+|+|+||....+..... . ...+++.|+|+|+||.+|+|||+||||++.+ ...+|||+||.+
T Consensus 666 ~~~~~~~~F~D~G~v~~~~~~~~~~~--~-~~~~~~~s~G~Glr~~tp~gpi~ld~a~~l~~~~~d~~~~~~f~~G~~ 740 (741)
T TIGR03303 666 DNGLRGSVFFDAGNVWGTDQKKEGDY--S-DDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTT 740 (741)
T ss_pred cCcEEEEEEEEeeecccCCccccccc--C-CCCcEEEEEEEEEEEECCcCcEEEEEEEeCCCCCCCceEEEEEeCccc
Confidence 2599999999999998743210000 0 1125789999999999999999999999863 457999999974
No 6
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-42 Score=387.26 Aligned_cols=469 Identities=20% Similarity=0.259 Sum_probs=341.3
Q ss_pred HcCCCceeeeeEEe---CCCcEEEEEEEeeCCceE----EEEEecCcCCChhHHHHH---hcCCCCcccCHHHHHHHHHH
Q 005225 188 DSGYFCSCMPVAVD---TRDGIRLVFQVEPNQEFH----GLVCEGANVLPTKFVEDA---FRDGYGKVVNIRRLDEVITS 257 (707)
Q Consensus 188 ~~GYf~a~v~~~v~---~~~~v~l~~~V~EG~~~~----~I~~~G~~~~~~~~L~~~---~~~~~g~~~~~~~l~~~~~~ 257 (707)
..||+.+.+.+.+. ....-.++.+|.+|+..+ .+.+.|.. +....++.. ...+.|..+++..+++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~pg~~~~i~~~~~v~~G~a-~~d~~~~~~~~~~~~~~G~~~~~~~~~n~k~~ 159 (594)
T COG0729 81 ALGYLQPKGRFGGKVSVTEKRGKLIAKVTPGEPTPIAVVIVVLPGPA-FTDGDYRLLGDAAGPKEGEDLNQGTYENAKSS 159 (594)
T ss_pred hhceecceeeecccccccccccceeeecCCCCCcccceeeeeccccc-ccChhhhhhhhhhccccCCccccchhhhhHHH
Confidence 57888877765542 223446788888888744 45567843 333333222 34668999999999999999
Q ss_pred HHHHHHhCCce-eEeeeEEEeeC---c--EEEEEEeee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCcc
Q 005225 258 INGWYMERGLF-GMVSGVEILSG---G--IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVY 328 (707)
Q Consensus 258 I~~~y~~~GY~-a~V~~~~~~~~---~--~v~i~I~eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~ 328 (707)
|.....++||+ +++...+...+ + .+++.++.| .++.|.|+ |. .+++++.|++.+++++|++|
T Consensus 160 i~~~~~~~gy~~a~~~~~r~~v~~~~~~a~~~~~~dsG~~y~~g~v~~~------g~---~r~~~~~~~~~~~~~~G~~Y 230 (594)
T COG0729 160 IVRALLRKGYFLARFTKSRLVVDPATHTADVDLNYDSGRRYRFGPVTVE------GS---QRIDEEYLQNLVPFKYGLPY 230 (594)
T ss_pred HHHHHHHcCcchhcccccccccccccceEEEEEeecccceEEeCcEEEc------cc---eecCHHHHhhccccCCCCcC
Confidence 99999999995 77765443221 2 356666655 68899998 76 37999999999999999999
Q ss_pred chhhHHHHHHHHHhCCCCccceeeeccC--CCCCeEEEEEEEEEcCCceEEEeeeeecCccCCCccceEEEEEEEecCCC
Q 005225 329 SMLQGKRDVETVLTMGIMEDVSIIPQPA--GDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVF 406 (707)
Q Consensus 329 ~~~~l~~~~~~L~~~G~F~~V~i~~~~~--~~~~~vdl~i~V~E~~~~~~~~g~gyss~~~~g~~~g~~~~~~~~~~Nlf 406 (707)
+.+++.+..++|.++++|++|.|++... ..++.++|.|.|.|++...+.+|+||+++ .|.++.+.|.++|+|
T Consensus 231 ~~~~l~~~~~rl~~~~~F~sv~v~~~~~~~~~~~~~pv~v~~~~rk~~~~~lG~gyst~------~G~~~~~~w~~~~~~ 304 (594)
T COG0729 231 DPEDLAELNQRLRQTGYFSSVVVQPADKQAGPDGLLPVKVSVSERKENTFELGVGYSTD------VGAGLEAGWEKRNLF 304 (594)
T ss_pred CHHHHHHHHHHHhhcCceeeEEEecCccccCcCceeceEEEecccccceEEeeeEEecc------ccccceEEeeeeccc
Confidence 9999999999999999999999988765 34566899999999999999999999997 788999999999999
Q ss_pred CCCeEEEEEEEEceeeEEEEEEEeeccccCCCCceEEEEEEEeeecCCccccCCCCCCCceEEEEEEEEEEEEeeCCCCe
Q 005225 407 GRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKW 486 (707)
Q Consensus 407 G~G~~l~l~~~~g~~~~~~~l~y~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 486 (707)
++||++.....++...+.....|..|.+.... .....+..++..++. + ..+...+. ..+++...+.....|
T Consensus 305 ~~~~~l~~~~~is~~~~~~~~~y~~p~~~~~~-~~~~~~~~~~~~~~~--~---~t~~~~~~---~~l~~~~~~~~~~~~ 375 (594)
T COG0729 305 GRGHSLRIESEISAPLQTLEATYKAPLLFNPL-GQYNPVSAGFDRLDL--Y---DTESDAYT---ESLSASRGWDASLGW 375 (594)
T ss_pred CcceeEeeeeeeccchhcCceEEEeecccCCc-cceeccccccccchh--h---cccccccc---ceeeeeehhccccCc
Confidence 99999999999988777789999999887642 122223222222211 0 11111222 223333333334444
Q ss_pred E--EEEEEEEEEEEeecCCCCcccccccC--CceeEeeeccCcceeeeeeeeecCCCCCCCceEEEEEEeccccCCCcce
Q 005225 487 S--GTVGLIFQHSGARDEKGNPIIKDFYS--SPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLF 562 (707)
Q Consensus 487 ~--~~lg~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~d~~D~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~ 562 (707)
. +.+++.+++....+..+.. .++. ..+++.||+ |+..+|+.|.. +.+..+.+...++++.
T Consensus 376 ~~~~~~r~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~-dd~~~Pt~G~~-----------~~~~~~~s~~~~~s~~- 439 (594)
T COG0729 376 QRSLALRFSYDNFRQGDISGKT---SLLTPGVEFSYTRDT-DDGLFPTWGDR-----------LDLTIGPSYEALGSDV- 439 (594)
T ss_pred eeEEEEEEEccccccccccCCc---eEEecceEEEEEEcc-CCCCCCCccce-----------eeeeeeeccccccCch-
Confidence 4 4444444442222211111 1333 445556666 99999985432 3444444445555555
Q ss_pred EEEEEEEEEEEEEecCc--eEEEEEEeeeeec----CCCcccceeeCCCCCccCCCCCcccc---------ceeEEEEeE
Q 005225 563 FNRVNARARKGVEIGPA--RLLLSLSGGHVVG----NFSPHEAFAIGGTNSVRGYEEGAVGS---------GRSYVVGSG 627 (707)
Q Consensus 563 f~k~~~~~~~y~~l~~~--~l~~~~~~G~~~g----~lp~~e~F~lGG~~svRGy~~~~lg~---------G~~~~~~s~ 627 (707)
+.+.......|+++... .++.|+.+|++.+ .+|++.||++||..|||||.+++++| |..++.+++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~R~~~G~il~~~~~~vPps~rFfaGG~~svRGY~y~sI~p~~~~g~~~Gg~~l~~~s~ 519 (594)
T COG0729 440 DFRLVQARSGYLRTGGADHRLAGRGELGAILTGDLDDVPPSLRFFAGGDRSVRGYGYQSIGPQDANGDLLGGRSLVTGSL 519 (594)
T ss_pred HHhhhhccceeeecCccceEEEEecccceEeeCccccCCccceeecCCCcceeccccccccCcCCCCCcccceEEEEeeE
Confidence 34444444555555533 5777888898775 59999999999999999999999874 789999999
Q ss_pred EEEEecCCceeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCcccEEEEEEEeCC----CCcEEEEEe
Q 005225 628 EISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDK----QAKRFHFGV 703 (707)
Q Consensus 628 Elr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~GlR~~tp~Gpirld~a~~~~----~~~~f~Fsi 703 (707)
||||++..+|++++|+|+|.+|++... .+ ++++.|+|+|+||.||+||||||+|+|++ +..+|||+|
T Consensus 520 Ey~~~~t~~~~~a~FvD~G~a~n~~~~--------~~-~d~k~G~Gigvr~~SPvGPIr~DiA~pl~~~~~~~~~~Yi~i 590 (594)
T COG0729 520 EYQYLVTDPWGLAVFVDAGSAGNNFTR--------LF-SDLKKGAGIGVRWDSPVGPIRFDIAVPLEDKDDKKFQFYIGI 590 (594)
T ss_pred EEEEeccCcEEEEEEEEccccccCCch--------hh-hhhhccceeeEeecCCcCCeEEEeeccccccCCCCeeEEEEe
Confidence 999999999999999999999998531 12 25889999999999999999999999975 678999999
Q ss_pred eec
Q 005225 704 GYR 706 (707)
Q Consensus 704 G~~ 706 (707)
|+.
T Consensus 591 G~~ 593 (594)
T COG0729 591 GQE 593 (594)
T ss_pred ccc
Confidence 974
No 7
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-33 Score=314.15 Aligned_cols=454 Identities=19% Similarity=0.234 Sum_probs=333.2
Q ss_pred eEEEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-eeEee-eEEEeeCcEEEEEEeeeEEEEEE
Q 005225 218 FHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVS-GVEILSGGIIRLQVAEAEVNNIS 295 (707)
Q Consensus 218 ~~~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~-~~~~~~~~~v~i~I~eg~i~~I~ 295 (707)
|+.|.++|+..++..+|.+.+....|+++....|.....+|+++|.++|| .++|. +.+.+.+|+|.|+|.||+|++|.
T Consensus 75 I~~i~l~g~~~~~~~~l~~~~~~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q~i~~G~l~l~VveG~i~~i~ 154 (554)
T COG2831 75 INRIELEGNTLLDALELQAILAPYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQDLKSGTLRLQVVEGRIEDIR 154 (554)
T ss_pred EEEEEEeCCcccChHHHHHhhHHhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCCcccCCeEEEEEeceEeeeEE
Confidence 34899999999999999999999999999999999999999999999999 57765 55777889999999999999999
Q ss_pred EEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCccceeeeccCCCCCeEEEEEEEEEcCCce
Q 005225 296 IRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGG 375 (707)
Q Consensus 296 i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~~~~~~vdl~i~V~E~~~~~ 375 (707)
|. |+ ....+..+...++..+|++++.++|++..+.|+++.-.+ |.+++.|+..++..+|.|+++++++++
T Consensus 155 i~------g~---~~~~~~~~~~~~p~~~g~~Ln~~~lEq~l~~l~~~P~~q-a~~~l~pg~~~G~S~l~i~~~~~~~~~ 224 (554)
T COG2831 155 IT------GD---SDLRSVALRSLFPAHRGDPLNLRDLEQGLELLNRLPGVQ-ADAELVPGSEPGESDLVIKVQQGKPWR 224 (554)
T ss_pred Ec------CC---CccchhhHHhhccccCCCCCCHHHHHHHHHHhhhCcccc-ceeEEccCCCCCccEEEEEeeeCCCeE
Confidence 99 87 356667788889999999999999999999999997765 888888888899999999999999888
Q ss_pred EEEeeeeecCccCCCccceEEEEEEEecCCCCCCeEEEEEEEEceee---EEEEEEEeeccccCCCCceEEEEEEEeeec
Q 005225 376 FSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQID---SIFRINYTDPWIEGDDKRTSRTIMVQNSRT 452 (707)
Q Consensus 376 ~~~g~gyss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g~~~---~~~~l~y~~P~~~~~~~~~s~~~~~~~~~~ 452 (707)
+++++.......+ ..+++.+++.+.|++|.|+.+++++..+... ..++++|+.|+... .+++++++...+.
T Consensus 225 ~~~~~DN~G~~~t---G~~r~~~~l~~dn~lglgD~l~~~~~~~~~~~~~~~~~~~Ys~P~g~~---~~~~~~s~~~y~~ 298 (554)
T COG2831 225 VSASADNYGSKST---GRYRLGVGLSLDNPLGLGDQLSLSYSRSLDGQTTNNYSLSYSVPLGYW---TFSLGASYSEYRQ 298 (554)
T ss_pred EEEEecCCCCcCc---cceeeEeEEEecCCCcchhheeehhcccCCCcccceEEEEEEEEEccc---eeEEEeeeeeeEe
Confidence 8887754433222 3578999999999999999999999985432 48999999998532 2344444332221
Q ss_pred CCccccCCCCCCCceEEEEEEEEEEEEeeCCC--CeEEEEEEEEEEEEeecCCCCc--c--cccccCCceeEeeecc--C
Q 005225 453 PGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRP--KWSGTVGLIFQHSGARDEKGNP--I--IKDFYSSPLTASGKTN--D 524 (707)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~lg~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~d~~--D 524 (707)
. + ........+..++...++.+.+++.+ ..++.+++++.+.+..+..... . ........+++++... .
T Consensus 299 ~--~--~~~~~~~~~~G~s~~~~~~l~~~l~R~~~~~~s~~~~~~~r~~~~~~~~~~~~~q~r~~~~~~~gl~~~~~~~~ 374 (554)
T COG2831 299 V--L--EGPFDVLDYQGKSQNLSLRLSHPLLRNRSSKLSLGLGLSHRRSENYLDDTEIEVQRRRLTAVELGLSGRRYLGG 374 (554)
T ss_pred e--c--ccCCceEEEecceEEEEEEeeeEEEecCcceEEEEEEEEEehhhhhhccccccccccccccEEecceEEEEecc
Confidence 1 0 01122334666777888889999854 4566666666666544321111 0 0111122222222111 0
Q ss_pred cceeeeeeeeecCCCCCCCceEEEEEEeccccCCCcceEEEEEEEEEEEEEecC--ceEEEEEEeeeeecCCCcccceee
Q 005225 525 EMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGP--ARLLLSLSGGHVVGNFSPHEAFAI 602 (707)
Q Consensus 525 ~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l~~--~~l~~~~~~G~~~g~lp~~e~F~l 602 (707)
..+....++.. +.++.|.. ....+.. ...+..|.++++++.+.+||.. ..+..++.+++..+.++..|+|.+
T Consensus 375 ~~~~~~l~~~~-G~~~lGa~--~~~~~~~---~~~~~~f~~~~~~~~~~~~f~~~~~~~~~~~~~Q~s~~~L~s~e~fsi 448 (554)
T COG2831 375 GTLDASLGYRR-GLGALGAS--KDDEETN---GEPTSRFKKLNGNASLLQPFGLGPFLYATQFNAQYSGDPLLSSEKFSI 448 (554)
T ss_pred ceecccchhhh-CchhhcCC--CCchhhc---CCCCcceEEEEEeeEEEeecccccEEEEEEEEEEEcCCCCCcHHHeec
Confidence 00000000000 11111111 0000000 0235789999999999999986 378888899998889999999999
Q ss_pred CCCCCccCCCCCccccceeEEEEeEEEEEecCCc--eeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEc
Q 005225 603 GGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGP--VEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDS 680 (707)
Q Consensus 603 GG~~svRGy~~~~lg~G~~~~~~s~Elr~pl~~~--l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~GlR~~t 680 (707)
||..+||||..+.+. ||..+.++.|+|+++... +++.+|+|+|.||+..... ...+...|+|+|+||.-
T Consensus 449 Gg~~sVRGf~~~~ls-gD~G~~~snel~~~~~~~~~~~~y~f~D~G~v~~~~~~~--------~~~~~l~g~~~Glr~~~ 519 (554)
T COG2831 449 GGRYSVRGFDGGSLS-GDRGWYLSNELRWPLPPGGALQPYVFVDYGKVYNNSAEY--------LSGETLAGAGLGLRGNL 519 (554)
T ss_pred CCCceecccCCCCcc-ccceEEEEEEEEeeccCCCceeEEEEEEeEEEecccccc--------CCCCeeEEEEEeEEeee
Confidence 999999999998887 999999999999999986 9999999999999883211 11245789999999997
Q ss_pred Cc-ccEEEEEEEeCC-------CCcEEEEEeeec
Q 005225 681 PL-GPLRLEYAFNDK-------QAKRFHFGVGYR 706 (707)
Q Consensus 681 p~-Gpirld~a~~~~-------~~~~f~FsiG~~ 706 (707)
.. --.+|++|+|+. ...+++|+++++
T Consensus 520 ~~~f~~~l~~g~pl~~p~~~~~~~~~~~~~~~~~ 553 (554)
T COG2831 520 KDGFSYDLDLGRPLSKPAGFDNRRTVVGFSFSYS 553 (554)
T ss_pred cCcceeEEEecccccCccccCCCCceeEEEEEEE
Confidence 66 467788888752 467888888764
No 8
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=100.00 E-value=4.2e-31 Score=282.28 Aligned_cols=283 Identities=28% Similarity=0.436 Sum_probs=220.7
Q ss_pred CCCCCCeEEEEEEEEceeeEEEEEEEeeccccCCCCceEEEEEEEeeecCCccccCCCCCCCceEEEEEEEEEEEEeeCC
Q 005225 404 NVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIR 483 (707)
Q Consensus 404 NlfG~G~~l~l~~~~g~~~~~~~l~y~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 483 (707)
|+||.|+++++++.++...+.+.++|+.|++.+.+ +.+.+++++.... ......|..++.++.+.+++++.
T Consensus 1 N~~G~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 71 (323)
T PF01103_consen 1 NLFGTGQSLSVSATYGSDSQSLSLSYTNPYFFGDR--LSLGFSLYYSSSD-------SDEFSSYDEQTFGFSLSLGYRIS 71 (323)
T ss_pred CCCCCCeEEEEEEEEcCceEEEEEEEEEcCCCCCC--EEEEEEEEEEEcc-------ccccccceeeeccccccceeEcc
Confidence 89999999999999988888999999999987654 5666666554311 12344577888899999999999
Q ss_pred CCeEEEEEEEEEEEEeecCCCCcc------------cccccCCceeEeeeccCcceeeeeeeeecCCCCCCCceEEEEEE
Q 005225 484 PKWSGTVGLIFQHSGARDEKGNPI------------IKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNME 551 (707)
Q Consensus 484 ~~~~~~lg~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~d~~D~~~~P~~g~~~~~~G~~g~~~~~~~~~ 551 (707)
+.+++.+++.+.+.++........ ........++++||++|+.++|+.|.. +.+..+
T Consensus 72 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~-----------~~~~~~ 140 (323)
T PF01103_consen 72 PNWSLSLGYSYSRNDFSTSSGSPFSDSVSSSDLQDGKSNISSLGLSLSYDTRDNSFFPTKGWY-----------LSFSLE 140 (323)
T ss_pred cceEEEEEEEEEEEEEEcCCCcccccccccccccCCceEEEEEEEEEEEecCCCccCCccceE-----------EEEEEE
Confidence 999999999999888765432210 011334677889999999999985432 345555
Q ss_pred eccccCCCcceEEEEEEEEEEEEEecC--c-eEEEEEEeeeeec-----CCCcccceeeCCCCCccCCCCCcccc-----
Q 005225 552 QGLPVWPEWLFFNRVNARARKGVEIGP--A-RLLLSLSGGHVVG-----NFSPHEAFAIGGTNSVRGYEEGAVGS----- 618 (707)
Q Consensus 552 ~~~~~~~~~~~f~k~~~~~~~y~~l~~--~-~l~~~~~~G~~~g-----~lp~~e~F~lGG~~svRGy~~~~lg~----- 618 (707)
.+.+.++++..|.|+++++++|+++.+ + .+++++.+|++.+ ++|..|+|++||.++||||..++++|
T Consensus 141 ~~~~~~~~~~~f~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~f~lGG~~svRGy~~~~~~~~~~~~ 220 (323)
T PF01103_consen 141 FSGKFLGSDSNFYKFELSARYYYPLGNNHKFVLALRLQGGYIFGYSNSDNLPFSERFYLGGPNSVRGYRYRSIGPRDGDG 220 (323)
T ss_pred EecccCCCcceEEEEEEEEEEEEECccCCceEEEEeeeeeEeeecccccccchhhhhccCCCCccccccCCccccccccC
Confidence 555445678889999999999999974 2 6888888887652 49999999999999999999999875
Q ss_pred ----ceeEEEEeEEEEEecC-----CceeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCcccEEEEE
Q 005225 619 ----GRSYVVGSGEISFPML-----GPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEY 689 (707)
Q Consensus 619 ----G~~~~~~s~Elr~pl~-----~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~GlR~~tp~Gpirld~ 689 (707)
|+.++.+++|||+|++ ..+++++|+|+|+||+..............+++++.|+|+||||.+|+||||+||
T Consensus 221 ~~~gG~~~~~~~~E~r~~l~~~~~~~~~~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~~~~~g~lr~d~ 300 (323)
T PF01103_consen 221 DSLGGDYYFTASAEYRFPLPKIPGSPNLYLVAFADAGNVWNDNDNFPLNSDSFTSKDNIRSSVGVGLRYDTPIGPLRFDY 300 (323)
T ss_pred cccCceEEEEEeeeeEeeccccccCCcEEEEEEEccccccccCCCcCcccccccccccccceEEEEEEEecCcEEEEEEE
Confidence 5999999999999994 3699999999999998865432211110011257899999999999999999999
Q ss_pred EEeCC-----CCcEEEEEeeec
Q 005225 690 AFNDK-----QAKRFHFGVGYR 706 (707)
Q Consensus 690 a~~~~-----~~~~f~FsiG~~ 706 (707)
|++.+ ...+|||+||+.
T Consensus 301 a~~l~~~~~~~~~~f~f~~g~~ 322 (323)
T PF01103_consen 301 AYPLNKPPGDDRNRFYFSIGQT 322 (323)
T ss_pred EEEccCCCCCcceEEEEEEeCC
Confidence 99753 234999999974
No 9
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=99.92 E-value=1.2e-24 Score=226.44 Aligned_cols=381 Identities=19% Similarity=0.260 Sum_probs=259.4
Q ss_pred eeeEEEEEEEEeccccCCCCCCCCCCHHHHHhhccc-CCCCccc--hhhHHHHHHHHHhCCCCccceeeecc--C--CCC
Q 005225 287 AEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTT-KKGQVYS--MLQGKRDVETVLTMGIMEDVSIIPQP--A--GDT 359 (707)
Q Consensus 287 ~eg~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l-~~G~~~~--~~~l~~~~~~L~~~G~F~~V~i~~~~--~--~~~ 359 (707)
.|.+|..|.|. |+ .+|++++|.+++.. .+...+. ......+..+|.+++.|+.|.+..+. + ..+
T Consensus 34 ~~~~v~~V~v~------Gl---~~Tkdd~I~k~v~~~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p 104 (457)
T KOG2602|consen 34 LESRVDHVIVS------GL---ERTKDDFIMKEVDLVFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALP 104 (457)
T ss_pred ccceeeEEEec------cc---cccchHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCC
Confidence 34588999998 98 59999999998752 2222222 12334566789999999999988765 2 357
Q ss_pred CeEEEEEEEEEcCCceEEEeeeeecCccCCCccceEEEEEEEecCCCCCCeEEEEEEEEc-eeeEEEEEEEeeccccCCC
Q 005225 360 GKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERG-QIDSIFRINYTDPWIEGDD 438 (707)
Q Consensus 360 ~~vdl~i~V~E~~~~~~~~g~gyss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g-~~~~~~~l~y~~P~~~~~~ 438 (707)
+..+|++.|.|.++ +....| ++ .|+ ..-.+.+.+..+|++|+|+.+..++.++ .....+.+++..|.+.+..
T Consensus 105 ~~~~Vt~~v~E~kr--~tg~~G--T~--~gn-~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~~~~ 177 (457)
T KOG2602|consen 105 GGLVVTFLVTEPKR--LTGSTG--TD--VGN-REGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFHGLK 177 (457)
T ss_pred CceeEEEEeeecch--heeecc--cc--ccC-CCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccCCCC
Confidence 88999999999887 333333 22 111 1124568889999999999999999998 5567899999999987654
Q ss_pred CceEEEEEEEeeecCCccccCCCCCCCceEEEEEEEEEEEEeeCCCCeEEEEEEEEEEEEeecC--CCCcccccc-----
Q 005225 439 KRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDE--KGNPIIKDF----- 511 (707)
Q Consensus 439 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~~~~~~--~~~~~~~~~----- 511 (707)
.+++ ...+.... +......+.....++.+.+.++..-.+...+.|+.-..++.+. .....++..
T Consensus 178 ~~~~--~~~~~~~~-------d~~~~ss~d~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~~~sq~as~svR~qaG~~L 248 (457)
T KOG2602|consen 178 TPFS--SFSIFRTQ-------DWMKWSSLDETHRGASLELSAEDWFLLFHELKYEIAWRNLGDLSQGASFSVRRQAGHSL 248 (457)
T ss_pred cchh--hhhhhhhh-------cccccccccccccceEEEEecchhhhhhHHHHHHHHHHhhccccccccHHHHHHhhHHH
Confidence 3222 21111111 1122344555555666666554321111111111111122211 112222221
Q ss_pred -cCCceeEeeeccCcceeeeeeeeecCCCCCCCceEEEEEEeccccCCCcceEEEEEEEEEEEEEecCc-eEEEEEEeee
Q 005225 512 -YSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPA-RLLLSLSGGH 589 (707)
Q Consensus 512 -~~~~l~~~~d~~D~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l~~~-~l~~~~~~G~ 589 (707)
.....++.+|+||..+.|++|.. +....|.+. ...+..|.|.+++++...|+... ++.+++++|+
T Consensus 249 ~s~L~~tfv~D~Rd~~~~ptrG~~-----------~k~~~e~~g--~~~~~sf~k~e~~lq~avpl~~~~~~s~~~~~G~ 315 (457)
T KOG2602|consen 249 KSSLSYTFVFDKRDSSIIPTRGIL-----------LKSTSELAG--LFGDVSFLKSELDLQKAVPLGFDATLSFSFSGGV 315 (457)
T ss_pred HHhhcceEEEeccCCcccccccce-----------eEeehhhcC--cccchhhhhhhhhheeccccccceeeEeeEeeee
Confidence 23566788999999999996532 234444432 22457899999999999999876 7889999998
Q ss_pred eec----CCCcccceeeCCCCCccCCCCCcccc--------ceeEEEEeEEEEEecCC------ceeEEEEEEecccCCC
Q 005225 590 VVG----NFSPHEAFAIGGTNSVRGYEEGAVGS--------GRSYVVGSGEISFPMLG------PVEGVIFSDYGTDLGS 651 (707)
Q Consensus 590 ~~g----~lp~~e~F~lGG~~svRGy~~~~lg~--------G~~~~~~s~Elr~pl~~------~l~~~~F~D~G~v~~~ 651 (707)
+.+ .+++.||||+||+.+||||..+.+|| |+.++.+.+.+-+|++. .+++++|+.+|++-+.
T Consensus 316 l~~~~~~~v~I~dRFylGGps~lRGFk~~giGP~~~~~~lGG~a~~a~~~~L~~~lP~~~~~~~~fr~h~F~naG~l~~l 395 (457)
T KOG2602|consen 316 LKPLGSRPVSIADRFYLGGPSDLRGFKTRGIGPKDEGDFLGGDAFVAAGAHLYFPLPFAKGFKSGFRGHVFANAGNLANL 395 (457)
T ss_pred eecCCCCccchhhhhccCCcccccccccCCcCCCCCCcccCCceeeEeeeEecccCCcccccccceeeEEEecccccccc
Confidence 864 47788999999999999999999884 89999999999998875 4899999999999776
Q ss_pred CCCCCCCCCCCCCCCCCceeeEEEEEEEcC-cccEEEEEEEeCC------CCcEEEEEeeec
Q 005225 652 GPSVPGDPAGARLKPGSGYGYGFGIRVDSP-LGPLRLEYAFNDK------QAKRFHFGVGYR 706 (707)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~s~G~GlR~~tp-~Gpirld~a~~~~------~~~~f~FsiG~~ 706 (707)
....+.+ ..-.+.+.+++|+|+|+-+.+| +.-+.|.|-+|.. ...+|+|++|.+
T Consensus 396 ~s~~~~~-~~~kl~e~~r~S~G~Glv~~~~~~aR~ELNy~~pl~~~e~D~~~~GfqfG~g~~ 456 (457)
T KOG2602|consen 396 SSEAPKN-TIPKLLETFRTSVGAGLVVPTPRAARLELNYCLPLKKQENDRIRKGFQFGAGID 456 (457)
T ss_pred Ccccccc-hhhhhhhhhccccccceEEecchhhceeeeeEEEeeeeccchhhcceEeccccc
Confidence 5422111 0012334688999999999999 8788888887752 467999999974
No 10
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=99.91 E-value=4.6e-21 Score=228.34 Aligned_cols=231 Identities=16% Similarity=0.295 Sum_probs=194.8
Q ss_pred cccccccCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHH----HHcCCCceeeeeEEe--
Q 005225 128 SVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVD-- 201 (707)
Q Consensus 128 ~~~~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l----~~~GYf~a~v~~~v~-- 201 (707)
..++.+.|+|+|++|.|+| |+.+++++|++.+ ..+++|+.|+++.+++|+++| .++|||++.|.+.+.
T Consensus 60 ~l~~~v~e~~~i~~i~~~G--~~~~~~~~l~~~~----~~~~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~ 133 (741)
T TIGR03303 60 VLVIKVKERPIINSIVFSG--NKEIKKDQLKKAL----VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPL 133 (741)
T ss_pred EEEEEEEecceEEEEEEEC--CccCCHHHHHHHH----hhccCCCcCCHHHHHHHHHHHHHHHHHcCcceeEEEEEEEEC
Confidence 3488999999999999999 9999999999755 158899999999999999999 489999999987764
Q ss_pred CCCcEEEEEEEeeCCceE--EEEEecCcCCChhHHHHHhcCCC---------CcccCHHHHHHHHHHHHHHHHhCCce-e
Q 005225 202 TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGY---------GKVVNIRRLDEVITSINGWYMERGLF-G 269 (707)
Q Consensus 202 ~~~~v~l~~~V~EG~~~~--~I~~~G~~~~~~~~L~~~~~~~~---------g~~~~~~~l~~~~~~I~~~y~~~GY~-a 269 (707)
.++.+.|+|.|+||++++ +|.|+||+.+++++|++.+..++ +++|+.+.+++++++|+++|+++||+ +
T Consensus 134 ~~~~~~v~~~v~eg~~~~i~~i~~~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~Gy~~a 213 (741)
T TIGR03303 134 PRNRVDLEFNIKEGKKAKIKKINFVGNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDF 213 (741)
T ss_pred CCCeEEEEEEEecCCEEEEEEEEEECCCcCCHHHHHHHHhcCcchhHHhccCCCeECHHHHhhhHHHHHHHHHhCCcEEE
Confidence 345689999999999754 99999999999999999998776 48999999999999999999999995 8
Q ss_pred EeeeEEEe--eC-c--EEEEEEeee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHH
Q 005225 270 MVSGVEIL--SG-G--IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL 341 (707)
Q Consensus 270 ~V~~~~~~--~~-~--~v~i~I~eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~ 341 (707)
+|...... .+ + .|++.|+|| +|++|.|. |+ ..++++.|++.+.+++|++|+.++++++.++|.
T Consensus 214 ~v~~~~~~~~~~~~~~~i~~~v~eG~~~~i~~i~i~------g~---~~~~~~~l~~~~~~~~G~~~~~~~~~~~~~~l~ 284 (741)
T TIGR03303 214 KVESTQVSITPDKKGVYITYNIKEGEQYKFGEVTIE------GD---LIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIK 284 (741)
T ss_pred EEcCCEEEECCCCCEEEEEEEeccCCCEEEEeEEEE------ec---cCCcHHHHHHhhcCCCCCeeCHHHHHHHHHHHH
Confidence 88854322 22 2 488999998 69999999 88 378889999999999999999999999988876
Q ss_pred h----CCCCccceeeecc--CCCCCeEEEEEEEEEcCCc
Q 005225 342 T----MGIMEDVSIIPQP--AGDTGKVDLIMNVVERPSG 374 (707)
Q Consensus 342 ~----~G~F~~V~i~~~~--~~~~~~vdl~i~V~E~~~~ 374 (707)
+ .||. .+.+.+.+ ..+.+.++|++.|.|+++.
T Consensus 285 ~~y~~~Gy~-~~~v~~~~~~~~~~~~v~v~~~v~eg~~~ 322 (741)
T TIGR03303 285 DLLGEKGYA-FANVNPRPQINDENKTVDLTFKVDPGKRV 322 (741)
T ss_pred HHHHhcCCc-eeEEEecceECCCCCEEEEEEEEccCCeE
Confidence 5 6874 34544432 2345689999999999864
No 11
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=99.91 E-value=2e-22 Score=241.48 Aligned_cols=233 Identities=13% Similarity=0.200 Sum_probs=195.5
Q ss_pred ccccccCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHH----HHcCCCceeeeeEEe--C
Q 005225 129 VSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVD--T 202 (707)
Q Consensus 129 ~~~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l----~~~GYf~a~v~~~v~--~ 202 (707)
-.+++.|+|.|++|.|+| |+.++++.|++.+.. + .+++|+.|++..+++++++| .++|||++.|.+.+. .
T Consensus 84 l~~~v~e~p~I~~I~~~G--n~~~~~~~l~~~l~~-~-~~~~g~~~~~~~~~~~~~~l~~~Y~~~Gy~~~~V~~~~~~~~ 159 (803)
T PRK11067 84 LLVQVKERPTIASITFSG--NKSVKDDMLKQNLEA-S-GVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLP 159 (803)
T ss_pred EEEEEecCcEEEEEEEEC--cccCCHHHHHHHHHh-c-cccccccCCHHHHHHHHHHHHHHHHhcCccccEEEEEEEECC
Confidence 389999999999999999 999999999987632 2 57999999999999999999 489999999987763 4
Q ss_pred CCcEEEEEEEeeCCce--EEEEEecCcCCChhHHHHHhcCCCC---------cccCHHHHHHHHHHHHHHHHhCCce-eE
Q 005225 203 RDGIRLVFQVEPNQEF--HGLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGLF-GM 270 (707)
Q Consensus 203 ~~~v~l~~~V~EG~~~--~~I~~~G~~~~~~~~L~~~~~~~~g---------~~~~~~~l~~~~~~I~~~y~~~GY~-a~ 270 (707)
++++.|+|.|+||+++ ++|.|+||+.+++++|++.|.++++ +.|+..++++++++|+++|+++||+ ++
T Consensus 160 ~~~v~l~~~i~EG~~~~I~~I~f~GN~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~Y~~~Gy~~a~ 239 (803)
T PRK11067 160 RNRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFN 239 (803)
T ss_pred CCeEEEEEEEecCCeEEEEEEEEECCCCcCHHHHHHHhcCCCCcchhhhccCCccCHHHHhhhHHHHHHHHHHCCCceEE
Confidence 5678999999999884 4999999999999999999998876 6799999999999999999999996 88
Q ss_pred eeeEEE--eeCc---EEEEEEeee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHH--
Q 005225 271 VSGVEI--LSGG---IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETV-- 340 (707)
Q Consensus 271 V~~~~~--~~~~---~v~i~I~eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L-- 340 (707)
|.+... ..++ .|++.|+|| +|++|.|. |+. ...++.+++.+.+++|++|+..++++..++|
T Consensus 240 V~~~~~~~~~~~~~v~i~~~I~eG~~~~i~~i~~~------G~~---~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~ 310 (803)
T PRK11067 240 IDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVS------GNL---AGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKK 310 (803)
T ss_pred ecCcEEEEcCCCceEEEEEEEeeCCcEEEEEEEEE------ecC---CCCHHHHHHhhcCCCCceeCHHHHHHHHHHHHH
Confidence 886542 2232 488999998 89999999 883 6678889999999999999998888777665
Q ss_pred --HhCCCCc-cceeeeccCCCCCeEEEEEEEEEcCCc
Q 005225 341 --LTMGIME-DVSIIPQPAGDTGKVDLIMNVVERPSG 374 (707)
Q Consensus 341 --~~~G~F~-~V~i~~~~~~~~~~vdl~i~V~E~~~~ 374 (707)
.+.||+. .|...+..+.+++.++|++.|.|+++.
T Consensus 311 ~~~~~GY~~a~v~~~~~~~~~~~~v~i~~~v~eG~~y 347 (803)
T PRK11067 311 LLGRYGYAYPRVQTQPEINDADKTVKLHVNVDAGNRF 347 (803)
T ss_pred HHHhCCCCcceeeeccccCCCCCEEEEEEEEeeCCeE
Confidence 4579953 343333333457889999999999863
No 12
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=8.8e-21 Score=219.38 Aligned_cols=233 Identities=17% Similarity=0.308 Sum_probs=200.3
Q ss_pred ccccccCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHH----HcCCCceeeeeEEe--C
Q 005225 129 VSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAVD--T 202 (707)
Q Consensus 129 ~~~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~----~~GYf~a~v~~~v~--~ 202 (707)
-+++|.|+|.|++|.|+| |+.+++++|++.+ .+++|++|+...+++++++|. ..|||++.|...+. +
T Consensus 84 Lvv~V~e~p~I~~v~~~G--n~~i~~~~L~~~l-----~~~~g~~~~~~~l~~~~~~l~e~Y~~~G~~~~~v~~~~~~~~ 156 (766)
T COG4775 84 LVVTVKERPVINSVVFSG--NKSIKDDALKKNL-----KIKPGEVLNRAKLEADVEALKEAYLSRGYYSVKVTYKVTPLP 156 (766)
T ss_pred EEEEEecCCcEEEEEEeC--CccCChHHHHHhh-----ccCCCCcccHHHHHHHHHHHHHHHHhcCeecceeEEEEEECC
Confidence 489999999999999999 9999999999866 578999999999999999995 78999999997763 4
Q ss_pred CCcEEEEEEEeeCCc--eEEEEEecCcCCChhHHHHHhcCCCC---------cccCHHHHHHHHHHHHHHHHhCCce-eE
Q 005225 203 RDGIRLVFQVEPNQE--FHGLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGLF-GM 270 (707)
Q Consensus 203 ~~~v~l~~~V~EG~~--~~~I~~~G~~~~~~~~L~~~~~~~~g---------~~~~~~~l~~~~~~I~~~y~~~GY~-a~ 270 (707)
+++|.|+|.|+||++ +++|.|.||+++++.+|++.+.+++- +.|+..+++.|++.|+++|+++||+ ++
T Consensus 157 ~~~v~v~f~i~eG~~~~i~~I~~~Gn~~~s~~~l~~~~~~k~~~~~~~~~~~~~y~~~~l~~D~e~lr~~Y~n~Gy~d~~ 236 (766)
T COG4775 157 RNRVDVVFVINEGPSAKIKQINFEGNTAFSDSDLESVVQTKESNIWGWLTRLDKYDPDKLEADLETLRSFYLNRGYADFR 236 (766)
T ss_pred CCeEEEEEEeCCCCccceeeeEEeccccccchhhhhheeeccceeEEEEecccccChhhhhccHHHHHHHHHhCceEEEE
Confidence 689999999999987 55999999999999999998877653 4699999999999999999999995 88
Q ss_pred eeeEEEee--C---cEEEEEEeee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHH-
Q 005225 271 VSGVEILS--G---GIIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL- 341 (707)
Q Consensus 271 V~~~~~~~--~---~~v~i~I~eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~- 341 (707)
|...+... + -.|++.|+|| ++++|.|+ |+. ....+.|.+.+.+++|++|+.++|+++..+|.
T Consensus 237 v~s~~~~~~~~k~~~~vt~~V~EG~~y~~~~i~i~------g~~---~~~~~el~~~~~~~~g~~fn~~~i~~~~~~I~~ 307 (766)
T COG4775 237 VSSTQVSLDPDKKGVTVTYTVKEGPQYKFGSVLIE------GNL---AGVSEELEKLLKVKPGKLFNRKKIEDDADKIKE 307 (766)
T ss_pred EeeeeecccCCCccEEEEEEEccCCceEEEEEEEE------cCc---cCcHHHHHHhhccCCCceEcHHHHHHHHHHHHH
Confidence 88766432 2 2489999998 78999999 885 55588899999999999999999999888774
Q ss_pred ---hCCC-CccceeeeccCCCCCeEEEEEEEEEcCCceEE
Q 005225 342 ---TMGI-MEDVSIIPQPAGDTGKVDLIMNVVERPSGGFS 377 (707)
Q Consensus 342 ---~~G~-F~~V~i~~~~~~~~~~vdl~i~V~E~~~~~~~ 377 (707)
+.|| |..|.+.+.++.+..+++|.+.|.++++..+.
T Consensus 308 ~~~~~GY~~a~V~p~~~~n~~~~tv~v~~~V~~g~~~~V~ 347 (766)
T COG4775 308 RYARYGYAFANVSPQPDANDENKTVDVVFRVDEGDRVYVR 347 (766)
T ss_pred HHHhcCceeeEeeeecccCCCCcEEEEEEEEEcCCceeee
Confidence 4788 66676666666667899999999999875443
No 13
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate. HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.
Probab=99.90 E-value=8.2e-21 Score=208.33 Aligned_cols=338 Identities=19% Similarity=0.197 Sum_probs=181.7
Q ss_pred hcccCCCCccchhhHHHHHHHHHhCCCCccceeeeccCCCCCeEEEEEEEEEcCCceEEEeeeeecCccCCCccceEEEE
Q 005225 319 QLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSF 398 (707)
Q Consensus 319 ~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~~~~~~vdl~i~V~E~~~~~~~~g~gyss~~~~g~~~g~~~~~ 398 (707)
.++..+|++++.++||+.+++|++++-. +|++++.|+..++..+|.|++++.+++.+.+++.-.....+ ..+++.+
T Consensus 10 ~fP~~~G~~LnlrdlEQgle~lnrl~~~-~~~~~i~PG~~~G~S~i~i~~~~~~~~~~~~~~DN~Gs~~T---G~~q~~~ 85 (404)
T PF03865_consen 10 AFPNRKGKPLNLRDLEQGLEQLNRLPSN-QAKIDILPGEEPGTSDIVIENQPSKPWSGSLSLDNSGSKST---GRYQGGA 85 (404)
T ss_dssp -STT-TT-B--HHHHHHHHHHH-S-SSE-EEEEEEEE-SSTTEEEEEEEEEE-SS-EEEEEEEE-SSS-S---S-EEEEE
T ss_pred cCCCCCCCCCCHHHHHHHHHHhccCCCC-cceEEEecCCCCCEEEEEEEecccCCEEEEEEEecCCcccc---ceEEEEE
Confidence 4678999999999999999999998653 57888888888999999999999988877776643322222 3478899
Q ss_pred EEEecCCCCCCeEEEEEEEEce------eeEEEEEEEeeccccCCCCceEEEEEEEeeecCCccccCCCCCCCceEEEEE
Q 005225 399 AYSHRNVFGRNQKLNISLERGQ------IDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRV 472 (707)
Q Consensus 399 ~~~~~NlfG~G~~l~l~~~~g~------~~~~~~l~y~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (707)
++...|+||.++.+++++.... ....+.+.|+.|+.. |.+++.+.++++..... .......+..++.
T Consensus 86 ~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~G~-----~~ls~~~s~s~y~~~~~--~~~~~~~~~G~s~ 158 (404)
T PF03865_consen 86 TLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPYGY-----WTLSLFASYSDYRYHQG--LSYSTYDLSGDSR 158 (404)
T ss_dssp EEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEETT-----EEEEEEEEEEEEE---S--SSS-----EEEEE
T ss_pred EEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeeeec-----eEEEEEEEEeEEEEeec--cccceEEeeeeEE
Confidence 9999999999999999997642 235688999999842 45555444433221010 0112233556666
Q ss_pred EEEEEEEeeCC--CCeEEEEEEEEEEEEeecCCCC--ccc--ccccCCceeEeeeccCcceeeeeeeeecCCCCCCCceE
Q 005225 473 TAGMEFSRPIR--PKWSGTVGLIFQHSGARDEKGN--PII--KDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMF 546 (707)
Q Consensus 473 ~~~~~l~~~~~--~~~~~~lg~~~~~~~~~~~~~~--~~~--~~~~~~~l~~~~d~~D~~~~P~~g~~~~~~G~~g~~~~ 546 (707)
..++.+.|++. ...++++.+.+.+.+..+.... ..+ +......+++++... ++. |. ...
T Consensus 159 ~~~~~~~~~l~R~~~~k~~l~~~l~~k~~~n~i~d~~i~v~~~~lt~~~lgl~~~~~----~~~-g~----------~~~ 223 (404)
T PF03865_consen 159 SLGLRLSYVLYRSQNSKTSLSAGLSHKKSKNYINDIEIEVQSRRLTSLELGLNHSRY----LGG-GV----------LSA 223 (404)
T ss_dssp EEEEEEEEEEE--SSEEEEEEEEEEEEEEEEE--TTS---EEEEEEEEEEEEEEEEE-----TT-EE----------EEE
T ss_pred EEEEEeeEEEEECCCceEEEEEEEEEEEcccccccceeeeccceeeEEEeccceEEE----ecC-cE----------EEE
Confidence 77778888774 3455566666665554432211 111 122233444444321 111 00 002
Q ss_pred EEEEEeccccC------------CCcceEEEEEEEEEEEEEec--Cc--eEEEEEEeeeeecCCCcccceeeCCCCCccC
Q 005225 547 VFNMEQGLPVW------------PEWLFFNRVNARARKGVEIG--PA--RLLLSLSGGHVVGNFSPHEAFAIGGTNSVRG 610 (707)
Q Consensus 547 ~~~~~~~~~~~------------~~~~~f~k~~~~~~~y~~l~--~~--~l~~~~~~G~~~g~lp~~e~F~lGG~~svRG 610 (707)
.+.+++|.+.+ ..+.+|.|+.+.+.++.++. +. .+..++.++|+.++|+..|+|.+||.++|||
T Consensus 224 ~l~~~~G~~~~ga~~~~~~~~~~~~~~~f~k~~l~~~~~~~~~~~~~~~~~~~~~~gQys~d~L~ssEq~siGG~~sVRG 303 (404)
T PF03865_consen 224 NLSYSQGLPWFGAERDPEDADGNGPDSQFTKWSLNASLYQPFQLGNQPFSYNSSLSGQYSNDNLYSSEQFSIGGRYSVRG 303 (404)
T ss_dssp EEEEEEE-------------------EEEEEE---EEEEEEEEETTEEEEEEEEEEEEE-SS-SSSSEE--S------TT
T ss_pred eEEEEeccCccCCcCCchhccCCCcccceEEEEeehhhccceeecCccEEEEEEEEEEECCCCCChhheeccCCCceEcc
Confidence 23333332221 23568999888888777763 43 4556778899888999999999999999999
Q ss_pred CCCCccccceeEEEEeEEEEEecCC---ceeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEcCcccEEE
Q 005225 611 YEEGAVGSGRSYVVGSGEISFPMLG---PVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRL 687 (707)
Q Consensus 611 y~~~~lg~G~~~~~~s~Elr~pl~~---~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~GlR~~tp~Gpirl 687 (707)
|+++++. ||..+.++.|+.+++.. .+.+.+|+|+|.|+..... .+ + ....++++|+++......+.+
T Consensus 304 F~~~~ls-Gd~G~~~rNeLs~~~~~~~~~l~py~g~D~G~v~~~~~~-~~------~--~~~~g~~~Gl~~~~~~~~~dl 373 (404)
T PF03865_consen 304 FDESSLS-GDSGWYLRNELSWPFPLGNFSLTPYLGLDYGRVRGNKNN-QG------W--RSLAGLSAGLRLRYKQAQLDL 373 (404)
T ss_dssp ----S---SS-SS--EESEEEEEEE--SS-EEEEEEEEEEEEESSSS--E------E--EEEEEEEEEEEEESSSEEE--
T ss_pred cCCCcee-ecceEEEEEEEEeecCCCCceEEEEEEEEEEEEecCCCC-CC------C--ceEEEEEEEEEEEEcceeeee
Confidence 9999997 99999999999987642 4788999999999975321 00 0 123566666666555566777
Q ss_pred EEEEe
Q 005225 688 EYAFN 692 (707)
Q Consensus 688 d~a~~ 692 (707)
|++++
T Consensus 374 ~vs~g 378 (404)
T PF03865_consen 374 EVSRG 378 (404)
T ss_dssp -----
T ss_pred ccccc
Confidence 77543
No 14
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.77 E-value=2.9e-08 Score=82.62 Aligned_cols=72 Identities=21% Similarity=0.485 Sum_probs=62.9
Q ss_pred ceEEEEEEEeCCC-CccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHH----HcCCCceeeeeEEe-CCCcEEEEE
Q 005225 137 VLISEVLVRNKDG-EELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAVD-TRDGIRLVF 210 (707)
Q Consensus 137 ~~I~~I~~~G~~N-~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~----~~GYf~a~v~~~v~-~~~~v~l~~ 210 (707)
++|.+|.|+| | +.++++.|++.+ .+++|+.|++..+++++++|. +.||+.+.|.+... +++.+.|+|
T Consensus 1 ~~i~~I~i~G--n~~~~~~~~l~~~l-----~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~~~~v~l~~ 73 (78)
T PF07244_consen 1 YRIGEINIEG--NLKKFSDEELRREL-----GLKPGDPFNPEKIEEDIERLQDYYKDKGYFFAKVSPEIDPDDNTVDLTF 73 (78)
T ss_dssp CEEEEEEEES--E-SSSHHHHHHHCH-----SS-TTSBECHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEETTEEEEEE
T ss_pred CEEEEEEEEc--CceEeCHHHHHhhc-----CCCCCCEeCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCEEEEEE
Confidence 5799999999 8 889999888644 799999999999999999998 99999999987663 447899999
Q ss_pred EEeeC
Q 005225 211 QVEPN 215 (707)
Q Consensus 211 ~V~EG 215 (707)
.|+||
T Consensus 74 ~V~Eg 78 (78)
T PF07244_consen 74 NVDEG 78 (78)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99998
No 15
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.74 E-value=6.9e-08 Score=80.35 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=63.0
Q ss_pred ceEEEEEecC-cCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-eeEeeeEEEeeCc--EEEEEEeee
Q 005225 217 EFHGLVCEGA-NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGG--IIRLQVAEA 289 (707)
Q Consensus 217 ~~~~I~~~G~-~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~~~~~~~--~v~i~I~eg 289 (707)
++.+|.|.|| +.++++.|++.+.+++|++|+...++++.++|.++|.+.|| +++|.+.....++ .|++.|+||
T Consensus 2 ~i~~I~i~Gn~~~~~~~~l~~~l~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~~~~v~l~~~V~Eg 78 (78)
T PF07244_consen 2 RIGEINIEGNLKKFSDEELRRELGLKPGDPFNPEKIEEDIERLQDYYKDKGYFFAKVSPEIDPDDNTVDLTFNVDEG 78 (78)
T ss_dssp EEEEEEEESE-SSSHHHHHHHCHSS-TTSBECHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEcCceEeCHHHHHhhcCCCCCCEeCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCEEEEEEEEEeC
Confidence 4679999998 89999999999999999999999999999999999999999 7988876554434 478888886
No 16
>PLN03138 Protein TOC75; Provisional
Probab=98.73 E-value=8.5e-08 Score=110.30 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=112.3
Q ss_pred cccccCcceEEEEE------------EEeCCCCccChhhHHHHHHHHh------------------------hhcCCCCc
Q 005225 130 SRSDEERVLISEVL------------VRNKDGEELERKDLETEALTAL------------------------KACRANSA 173 (707)
Q Consensus 130 ~~~~~e~~~I~~I~------------~~G~~N~~~~~~~l~~~~~~~~------------------------~~~~~g~~ 173 (707)
++++++.+.|++|+ |+| |+.+++++|++.+.... ..++....
T Consensus 220 ~i~Eg~~~~I~~I~~i~~~~~~~~~~~~G--N~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~gk 297 (796)
T PLN03138 220 SFTESTWQSADSFRCINVGLMSQSKPIEM--DEDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRDQGK 297 (796)
T ss_pred EEEeCCceeeeeeeecccccccccceeeC--CcccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhccCCc
Confidence 67888889999999 999 99999999888775432 11223346
Q ss_pred cCHHHHHHHHHHHH----HcCCCceeeeeEEeCCCcEEEEEEEeeCCceE-EEE--------EecCcCCChhHHHHHhc-
Q 005225 174 LTVREVQEDVHRII----DSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFH-GLV--------CEGANVLPTKFVEDAFR- 239 (707)
Q Consensus 174 ~~~~~l~~d~~~l~----~~GYf~a~v~~~v~~~~~v~l~~~V~EG~~~~-~I~--------~~G~~~~~~~~L~~~~~- 239 (707)
|+.++|++|+++|. ++||..+.|..... .+.+.|+|.|.||.... +|+ ++||+ .+..|++.|.
T Consensus 298 lN~e~Lq~die~I~~~Y~d~GYafa~V~~~~~-id~g~Vtl~V~EG~i~~I~V~~~drig~~i~GNT--rD~VIRREL~~ 374 (796)
T PLN03138 298 VSARLLQRIRDRVQKWYHDEGYACAQVVNFGN-LNTNEVVCEVVEGDITKVVIQFQDKLGNVVEGNT--QLPIIDRELPK 374 (796)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCceEEEecccc-cCCceEEEEEecccEEEEEEEecccccccccCCc--cCeEEeeeccc
Confidence 99999999999994 89999988764322 23378899999999854 443 45555 4567788885
Q ss_pred -CCCCcccCHHHHHHHHHHHHHHHHhCCceeEeeeEEE--e--eCc-EEEEEEeee
Q 005225 240 -DGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEI--L--SGG-IIRLQVAEA 289 (707)
Q Consensus 240 -~~~g~~~~~~~l~~~~~~I~~~y~~~GY~a~V~~~~~--~--~~~-~v~i~I~eg 289 (707)
+++|++||..++++++++|. ..|||..|..... . ++. +|.+.|.|.
T Consensus 375 ~lkeGd~fN~~~l~~slqRL~----~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE~ 426 (796)
T PLN03138 375 QLRQGHIFNIEAGKQALRNIN----SLALFSNIEVNPRPDEKNEGGIVVEIKLKEL 426 (796)
T ss_pred ccCCCcccCHHHHHHHHHHHH----hCCCCceeEEEeccCCCCCCeEEEEEEEEEc
Confidence 59999999999999988876 7899855553321 1 223 378888884
No 17
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=98.62 E-value=1.9e-07 Score=77.44 Aligned_cols=72 Identities=21% Similarity=0.457 Sum_probs=59.0
Q ss_pred eEEEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-eeEee-eEEEeeCcEEEEEEeee
Q 005225 218 FHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVS-GVEILSGGIIRLQVAEA 289 (707)
Q Consensus 218 ~~~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~-~~~~~~~~~v~i~I~eg 289 (707)
+++|+|+|++.++.++|.+.+....|++++...|.+..++|.++|+++|| .++|. +.+...+|.|++.|.||
T Consensus 3 i~~i~~~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i~~G~l~i~V~eG 76 (76)
T PF08479_consen 3 IKGIRFEGNTLLPEEELQAILAPYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDISDGVLTIRVVEG 76 (76)
T ss_dssp --EEEEES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEETTSEEEEEEE--
T ss_pred eEEEEEECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeecCCCEEEEEEEcC
Confidence 56899999999999999999999999999999999999999999999999 57655 55667889999999986
No 18
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=98.55 E-value=8.6e-07 Score=104.25 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=109.6
Q ss_pred cccccCcceEEE-EEEEeCC------CCccChhhHHHHHHHHhhhcCCC-CccCHHHHHHHHHHHH----HcCCCceeee
Q 005225 130 SRSDEERVLISE-VLVRNKD------GEELERKDLETEALTALKACRAN-SALTVREVQEDVHRII----DSGYFCSCMP 197 (707)
Q Consensus 130 ~~~~~e~~~I~~-I~~~G~~------N~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~l~~d~~~l~----~~GYf~a~v~ 197 (707)
+++|.|+|.|++ |.|+|.. |..++.+.+++.+ ..+.| +.++...|++++++|. ++||..+.|.
T Consensus 173 ~~~V~enP~~~~~v~~~g~~~~~~~~~~~lp~~~l~e~~-----~~~~G~~~ln~~~L~~~~~~I~~~Y~~~GY~~A~V~ 247 (718)
T TIGR00992 173 DMEVKEKPEFTRRLEIRYKRRIAEARPCLLPQEVVDETF-----GMLYGQGIVSARLLQEIRDRVQEWYHNEGYACAQVV 247 (718)
T ss_pred EEEEecCCEEEEEEEEeecccccccccccCCHHHHHHHh-----ccccCCeecCHHHHHHHHHHHHHHHHHCCceeEEEe
Confidence 889999999999 9998721 2335555555433 56788 9999999999999984 8999998886
Q ss_pred eEEeCCCcEEEEEEEeeCCc--eE--EEEEecCc---CCChhHHHHHhc--CCCCcccCHHHHHHHHHHHHHHHHhCCce
Q 005225 198 VAVDTRDGIRLVFQVEPNQE--FH--GLVCEGAN---VLPTKFVEDAFR--DGYGKVVNIRRLDEVITSINGWYMERGLF 268 (707)
Q Consensus 198 ~~v~~~~~v~l~~~V~EG~~--~~--~I~~~G~~---~~~~~~L~~~~~--~~~g~~~~~~~l~~~~~~I~~~y~~~GY~ 268 (707)
........ .|+|.|.||+. |+ .|...|+. ...+..+++.+. +++|++|+..+|++++++|. +.|||
T Consensus 248 ~~~~~~~~-~V~l~V~EG~i~~I~V~~i~~~Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~~Le~~~~rL~----~lg~F 322 (718)
T TIGR00992 248 NFGNLNTD-EVVCEVVEGDITNLQIQFFDKLGNVVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTALQNIN----SLGLF 322 (718)
T ss_pred ccCcCCCC-EEEEEEeccceeEEEEEEecccCccccCccchHHHHHHHHhccCCCCcCCHHHHHHHHHHHH----cCCCc
Confidence 44322222 89999999983 22 23345664 344567888888 99999999999999988876 55675
Q ss_pred --eEeeeEEEe-eCc--EEEEEEeeeEEEEE
Q 005225 269 --GMVSGVEIL-SGG--IIRLQVAEAEVNNI 294 (707)
Q Consensus 269 --a~V~~~~~~-~~~--~v~i~I~eg~i~~I 294 (707)
++|...... ..+ .|.+.|.|+.-+.+
T Consensus 323 ~~V~V~~~p~~~~~g~v~V~V~V~E~~~~s~ 353 (718)
T TIGR00992 323 SNIEVNPRPDEMNEGEIIVEIKLKELEQKSA 353 (718)
T ss_pred ccceeeccCCCCCCCeEEEEEEEEECCCCce
Confidence 455433322 223 37788888754433
No 19
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=98.43 E-value=5.9e-05 Score=85.96 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=113.6
Q ss_pred ccccCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHH----HHcCCCceeeeeEEeC-CCc
Q 005225 131 RSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVDT-RDG 205 (707)
Q Consensus 131 ~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l----~~~GYf~a~v~~~v~~-~~~ 205 (707)
-++.++..|+.|+++| |..+...+|++.+ .-..|.++....|+.-.++| .++||--+.+...-++ +++
T Consensus 67 ~~E~~~f~I~~i~l~g--~~~~~~~~l~~~~-----~~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q~i~~G 139 (554)
T COG2831 67 PDETPCFPINRIELEG--NTLLDALELQAIL-----APYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQDLKSG 139 (554)
T ss_pred CCCCceEEEEEEEEeC--CcccChHHHHHhh-----HHhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCCcccCC
Confidence 3344578999999999 8888888888744 34478899998888877776 3899977776543222 333
Q ss_pred EEEEEEEeeCCceEEEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCce-eEeeeEEEeeCcEEEE
Q 005225 206 IRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLF-GMVSGVEILSGGIIRL 284 (707)
Q Consensus 206 v~l~~~V~EG~~~~~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY~-a~V~~~~~~~~~~v~i 284 (707)
+|.++|.||. +.+|++.|........+...+....|++++..+|++.++.|+..-..+ . +++.+-+..-..+|.|
T Consensus 140 -~l~l~VveG~-i~~i~i~g~~~~~~~~~~~~~p~~~g~~Ln~~~lEq~l~~l~~~P~~q--a~~~l~pg~~~G~S~l~i 215 (554)
T COG2831 140 -TLRLQVVEGR-IEDIRITGDSDLRSVALRSLFPAHRGDPLNLRDLEQGLELLNRLPGVQ--ADAELVPGSEPGESDLVI 215 (554)
T ss_pred -eEEEEEeceE-eeeEEEcCCCccchhhHHhhccccCCCCCCHHHHHHHHHHhhhCcccc--ceeEEccCCCCCccEEEE
Confidence 6899999996 789999999877767888899999999999999999999887655544 2 2233322111125788
Q ss_pred EEeeeEEEEEEEE
Q 005225 285 QVAEAEVNNISIR 297 (707)
Q Consensus 285 ~I~eg~i~~I~i~ 297 (707)
.+.+++-=++.+.
T Consensus 216 ~~~~~~~~~~~~~ 228 (554)
T COG2831 216 KVQQGKPWRVSAS 228 (554)
T ss_pred EeeeCCCeEEEEE
Confidence 8888643344444
No 20
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=97.45 E-value=0.0011 Score=75.71 Aligned_cols=151 Identities=16% Similarity=0.282 Sum_probs=109.4
Q ss_pred cccccC--cceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHH----HHcCCCceeeeeE---E
Q 005225 130 SRSDEE--RVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVA---V 200 (707)
Q Consensus 130 ~~~~~e--~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l----~~~GYf~a~v~~~---v 200 (707)
.++.+| ++.+..+.+.| ..+.+..++.....+ ..+.|..+++..+.....++ .++||+++.+... +
T Consensus 107 ~v~pg~~~~i~~~~~v~~G---~a~~d~~~~~~~~~~--~~~~G~~~~~~~~~n~k~~i~~~~~~~gy~~a~~~~~r~~v 181 (594)
T COG0729 107 KVTPGEPTPIAVVIVVLPG---PAFTDGDYRLLGDAA--GPKEGEDLNQGTYENAKSSIVRALLRKGYFLARFTKSRLVV 181 (594)
T ss_pred ecCCCCCcccceeeeeccc---ccccChhhhhhhhhh--ccccCCccccchhhhhHHHHHHHHHHcCcchhccccccccc
Confidence 344444 44445555667 566666666555322 35689999998888776666 4899999999632 3
Q ss_pred e-CCCcEEEEEEEeeCCceE--EEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCceeEee--eEE
Q 005225 201 D-TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVS--GVE 275 (707)
Q Consensus 201 ~-~~~~v~l~~~V~EG~~~~--~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY~a~V~--~~~ 275 (707)
+ ..+.+.+.+.++.|++|. .|+|+|...++++.++..+.+++|++|..+.|.+ +++.+++.+||..|. +..
T Consensus 182 ~~~~~~a~~~~~~dsG~~y~~g~v~~~g~~r~~~~~~~~~~~~~~G~~Y~~~~l~~----~~~rl~~~~~F~sv~v~~~~ 257 (594)
T COG0729 182 DPATHTADVDLNYDSGRRYRFGPVTVEGSQRIDEEYLQNLVPFKYGLPYDPEDLAE----LNQRLRQTGYFSSVVVQPAD 257 (594)
T ss_pred ccccceEEEEEeecccceEEeCcEEEccceecCHHHHhhccccCCCCcCCHHHHHH----HHHHHhhcCceeeEEEecCc
Confidence 3 456799999999999987 8999999999999999999999999999888877 566677999985443 222
Q ss_pred E--eeCcE--EEEEEeee
Q 005225 276 I--LSGGI--IRLQVAEA 289 (707)
Q Consensus 276 ~--~~~~~--v~i~I~eg 289 (707)
. .+++. |.+.+.|.
T Consensus 258 ~~~~~~~~~pv~v~~~~r 275 (594)
T COG0729 258 KQAGPDGLLPVKVSVSER 275 (594)
T ss_pred cccCcCceeceEEEeccc
Confidence 2 23444 55666665
No 21
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=96.47 E-value=0.015 Score=48.03 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=48.4
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHH----HHcCCCceeeeeEEe-CCCcEEEEEEE
Q 005225 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVD-TRDGIRLVFQV 212 (707)
Q Consensus 138 ~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l----~~~GYf~a~v~~~v~-~~~~v~l~~~V 212 (707)
.|++|.|+| |..++.++|.+.+ .-..|.+++...+++..++| .++||.-+.+.+.-. -.++ .|++.|
T Consensus 2 ~i~~i~~~G--~~~~~~~~l~~~~-----~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i~~G-~l~i~V 73 (76)
T PF08479_consen 2 PIKGIRFEG--NTLLPEEELQAIL-----APYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDISDG-VLTIRV 73 (76)
T ss_dssp ---EEEEES---TSSSCCHHHHHH-----GGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEETTS-EEEEEE
T ss_pred CeEEEEEEC--CCcCCHHHHHHHH-----HHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeecCCC-EEEEEE
Confidence 589999999 8999999888644 34579999999999988888 389999888875432 2445 588888
Q ss_pred eeC
Q 005225 213 EPN 215 (707)
Q Consensus 213 ~EG 215 (707)
.||
T Consensus 74 ~eG 76 (76)
T PF08479_consen 74 VEG 76 (76)
T ss_dssp E--
T ss_pred EcC
Confidence 887
No 22
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=85.24 E-value=1.7 Score=34.66 Aligned_cols=66 Identities=24% Similarity=0.282 Sum_probs=49.2
Q ss_pred EEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCccceeeeccCCCCCeEEEEEEEEE
Q 005225 291 VNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVE 370 (707)
Q Consensus 291 i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~~~~~~vdl~i~V~E 370 (707)
|.+|.|. |+ ...+.+.|...+.+..|+.+=.-+..+..++|...++.++|.+.... +++ |.|.|+|
T Consensus 3 v~~I~V~------G~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~p~V~~v~V~r~~---P~~--l~I~V~E 68 (69)
T PF08478_consen 3 VKKIEVS------GN---SYLSKEEILQALGIQKGKNLFSLDLKKIEQRLEKLPWVKSVSVSRRF---PNT--LEIKVKE 68 (69)
T ss_dssp --EEEEE------S----SSS-HHHHHHHHCTTSTTTCCCSHHHHHHHCCCCTTTEEEEEEEEET---TTE--EEEEEEE
T ss_pred ccEEEEE------CC---CcCCHHHHHHHhCcCCCCeEEEECHHHHHHHHHcCCCEEEEEEEEeC---CCE--EEEEEEe
Confidence 6789998 98 58999999999998888777666777888888889999999887653 454 5566666
No 23
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=79.86 E-value=5 Score=31.86 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=42.7
Q ss_pred ceEEEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCceeEeeeEEEeeCcEEEEEEee
Q 005225 217 EFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAE 288 (707)
Q Consensus 217 ~~~~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY~a~V~~~~~~~~~~v~i~I~e 288 (707)
+++.|.+.|+..++.+++.+.+.+..|+.+-.-...+ +.+...+..+...+...... .+.|.+.|.|
T Consensus 2 ~v~~I~V~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~l~~~p~V~~v~V~r~~-P~~l~I~V~E 68 (69)
T PF08478_consen 2 RVKKIEVSGNSYLSKEEILQALGIQKGKNLFSLDLKK----IEQRLEKLPWVKSVSVSRRF-PNTLEIKVKE 68 (69)
T ss_dssp S--EEEEES-SSS-HHHHHHHHCTTSTTTCCCSHHHH----HHHCCCCTTTEEEEEEEEET-TTEEEEEEEE
T ss_pred CccEEEEECCCcCCHHHHHHHhCcCCCCeEEEECHHH----HHHHHHcCCCEEEEEEEEeC-CCEEEEEEEe
Confidence 3568999999999999999999999887655444444 45555567776444432222 2457777766
No 24
>PRK05529 cell division protein FtsQ; Provisional
Probab=78.12 E-value=8.5 Score=39.68 Aligned_cols=70 Identities=19% Similarity=0.430 Sum_probs=56.4
Q ss_pred EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCccceeeeccCCCCCeEEEEEEEE
Q 005225 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV 369 (707)
Q Consensus 290 ~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~~~~~~vdl~i~V~ 369 (707)
.|.+|.|+ || ..+..+.|...+....|+.+-.-+.+...++|....+.++|.+.... ++ .|.|+|+
T Consensus 62 ~v~~I~V~------Gn---~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~---P~--tl~I~V~ 127 (255)
T PRK05529 62 ALRSIEVA------GN---MRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKP---PG--TIVVRVV 127 (255)
T ss_pred EEEEEEEE------CC---ccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeC---CC--EEEEEEE
Confidence 77889999 99 48899999988888888877555677778888899999999887653 45 4678888
Q ss_pred EcCC
Q 005225 370 ERPS 373 (707)
Q Consensus 370 E~~~ 373 (707)
|+.+
T Consensus 128 Er~p 131 (255)
T PRK05529 128 ERVP 131 (255)
T ss_pred Eeee
Confidence 9876
No 25
>PRK05529 cell division protein FtsQ; Provisional
Probab=60.85 E-value=42 Score=34.55 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=45.9
Q ss_pred cCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHHHcCCCceeeeeEEeCCCcEEEEEEEe
Q 005225 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVE 213 (707)
Q Consensus 134 ~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~~~GYf~a~v~~~v~~~~~v~l~~~V~ 213 (707)
.+...|++|.|+| |+.++.+++.+.+ ....|..+-.-..++-.++|.+.-+-+. +.+...-+ -.|.++|.
T Consensus 58 Sp~~~v~~I~V~G--n~~vs~~eI~~~~-----~~~~g~~l~~vd~~~~~~~l~~~P~V~s-a~V~r~~P--~tl~I~V~ 127 (255)
T PRK05529 58 SPLLALRSIEVAG--NMRVKPQDIVAAL-----RDQFGKPLPLVDPETVRKKLAAFPLIRS-YSVESKPP--GTIVVRVV 127 (255)
T ss_pred CCceEEEEEEEEC--CccCCHHHHHHHh-----cccCCCcceeECHHHHHHHHhcCCCEeE-EEEEEeCC--CEEEEEEE
Confidence 4668999999999 8999999998754 4556654433233333344444444322 11222222 25788888
Q ss_pred eCCceE
Q 005225 214 PNQEFH 219 (707)
Q Consensus 214 EG~~~~ 219 (707)
|.+++-
T Consensus 128 Er~pvA 133 (255)
T PRK05529 128 ERVPLA 133 (255)
T ss_pred EeeeEE
Confidence 887754
No 26
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=57.07 E-value=3.9e+02 Score=31.54 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=96.9
Q ss_pred CceEEEEEEEEEEEEeeCCCCeEEEEEEEEEEEEeecCCCCc----c--------cccccCCceeEeeeccCcceeeeee
Q 005225 465 SSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNP----I--------IKDFYSSPLTASGKTNDEMLIAKFE 532 (707)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~~----~--------~~~~~~~~l~~~~d~~D~~~~P~~g 532 (707)
..+..++..+.+...|++.+.+++.+|+.++..+-....... . ..+.....+++.|..||..-+....
T Consensus 333 ~~~d~tk~~~~~~a~YRl~~~~~l~~gy~~e~~dR~~~~re~T~E~~~~~~~~~r~~~~~~l~~~~~ys~R~GS~Y~~~~ 412 (637)
T PF11854_consen 333 TPYDYTKQNAKLDADYRLARGYRLEAGYEYEDWDRSYQDRESTDENTLWAKLRYRPSDWLSLRLKYSYSDRDGSEYQPNE 412 (637)
T ss_pred CcccccceeeeEEeEEEecCCcEEEEeeeEeeeeccchhccceeeeeEEEEEEeeeccceEEEEEEEEeeccCCccCCCc
Confidence 445666777888889999999999999999987553322110 0 0112223444555555432211100
Q ss_pred eeecCCCCCCCceEEEEEEeccccC----CCcceEEEEEEEEEEEEEecCceEEEEEEeeeeecCCCcccceeeCCCCCc
Q 005225 533 SVYTGSGDQGSSMFVFNMEQGLPVW----PEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSV 608 (707)
Q Consensus 533 ~~~~~~G~~g~~~~~~~~~~~~~~~----~~~~~f~k~~~~~~~y~~l~~~~l~~~~~~G~~~g~lp~~e~F~lGG~~sv 608 (707)
+ ......+.+ ..+..=.++.+.+.+ .|+ . .|.+.+.+.+..++.+-.+ +|
T Consensus 413 --~-------------t~~~~~~~lRky~LADR~R~~~~l~~~~-~~~-~-~l~l~~~~~~~~DdY~~t~---~G----- 466 (637)
T PF11854_consen 413 --W-------------TSSESNPLLRKYYLADRDRTKLELRANY-SPF-E-DLSLSLSGRYANDDYDDTD---IG----- 466 (637)
T ss_pred --c-------------ccCCCChhhhcccccccccceeEEEeee-ccc-c-ceEEeEEEEEccCCCCCcc---cc-----
Confidence 0 000000100 012222333333333 112 1 3566666666555444322 11
Q ss_pred cCCCCCccccceeEEEEeEEEEEecCCceeEEEEEEecccCCCCC--C-C-CCCCCCCCCCCCCceeeEEEEEEEcCcc-
Q 005225 609 RGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGP--S-V-PGDPAGARLKPGSGYGYGFGIRVDSPLG- 683 (707)
Q Consensus 609 RGy~~~~lg~G~~~~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~--~-~-~~~~~~~~~~~~~~~s~G~GlR~~tp~G- 683 (707)
-. ....+..++.+.|.+...+.+.+|+-.-+.-.... . . ..++.. +.+ +-...+|+|+.|.-.+.
T Consensus 467 --L~------~~~~~~~~ld~~y~~~~~l~~~af~~~q~~~s~Q~gs~~~~~~~W~~-~~~-D~~~~~G~G~~~~~l~~~ 536 (637)
T PF11854_consen 467 --LT------ESDDYGYDLDASYQPSDDLSLYAFYNQQWIDSDQAGSQNFSTPDWTS-DTE-DKVTTVGAGFSYQGLMDD 536 (637)
T ss_pred --cc------cceeeeeeeeEEEEECCCeEEEEEEEeEeehhhhccccCccCCCccc-ccc-ceeEEEEeceEeecccCc
Confidence 11 12234578889999999999999987655432211 0 0 000100 011 33478999999984443
Q ss_pred --cEEEEEEEeC
Q 005225 684 --PLRLEYAFND 693 (707)
Q Consensus 684 --pirld~a~~~ 693 (707)
-|.+||.|..
T Consensus 537 kL~lg~dYsys~ 548 (637)
T PF11854_consen 537 KLSLGLDYSYSD 548 (637)
T ss_pred cEEEeeeEEEec
Confidence 3566666653
No 27
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=53.63 E-value=36 Score=35.36 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=56.3
Q ss_pred EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCccceeeeccCCCCCeEEEEEEEE
Q 005225 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV 369 (707)
Q Consensus 290 ~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~~~~~~vdl~i~V~ 369 (707)
.|..|.|+ ||. .+.++.|++.+.+..+..+=.-+++...++|.......+|.+.-.. |+ .|.|.|+
T Consensus 61 ~i~~v~v~------Gn~---~~s~~~I~~~~~l~~~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~~---Pn--tv~I~v~ 126 (269)
T COG1589 61 PIRKVSVS------GNN---QVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQF---PN--TLEIEVV 126 (269)
T ss_pred cceEEEEe------cCc---ccCHHHHHHHhhhccCCceEEEcHHHHHHHHHhCCCeEEEEEEEeC---CC--cEEEEEE
Confidence 68889999 994 7778889998888888876666788888999999999999887643 45 4577888
Q ss_pred EcCC
Q 005225 370 ERPS 373 (707)
Q Consensus 370 E~~~ 373 (707)
|+.+
T Consensus 127 Er~p 130 (269)
T COG1589 127 EREP 130 (269)
T ss_pred Eeee
Confidence 8876
No 28
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=52.42 E-value=8.6 Score=32.28 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=39.5
Q ss_pred EEEEEeeeEEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCccc
Q 005225 282 IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDV 349 (707)
Q Consensus 282 v~i~I~eg~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V 349 (707)
|.++|..|.|.+|.|. |.. .....+...-..-.|.+|+.+.|.+....+.-..||..+
T Consensus 20 v~~~V~~G~I~~i~i~------gDf----~~~~~i~~le~~L~G~~~~~~~i~~~l~~~~~~~~~~~~ 77 (86)
T PF10437_consen 20 VHLNVKNGIIKDIKIY------GDF----FGPEDIEELEEALIGCPYDREAIKEALNSVDLEDYFGNI 77 (86)
T ss_dssp EEEEEETTEEEEEEEE------ECB----S-CCCHHHHHHHHTTCBSSHHHHHHHHHHCHGGGTCCTH
T ss_pred EEEEEECCEEEEEEEE------CCC----CCchHHHHHHHHHHhcCCCHHHHHHHHHHhCHhhccccC
Confidence 6778889999999998 652 211223322222369999999999998887655666543
No 29
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=48.76 E-value=2.4e+02 Score=33.32 Aligned_cols=62 Identities=8% Similarity=-0.002 Sum_probs=41.6
Q ss_pred ceEEEEEEEeeecCCcccc--CCCCCCCceEEEEEEEEEEEEeeCCCCeEEEEEEEEEEEEeec
Q 005225 440 RTSRTIMVQNSRTPGTHVH--GNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARD 501 (707)
Q Consensus 440 ~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~~~~~ 501 (707)
++.++++|.++...+.... ........+......+.+...|++++++.+.+.|.||+....+
T Consensus 537 kL~lg~dYsys~~~s~~~~~~~~~~~~pd~~~~~h~l~~~~~y~ls~~~~lrl~y~yEr~~~~D 600 (637)
T PF11854_consen 537 KLSLGLDYSYSDSDSDTDVTQGGSGPYPDYYSRQHNLNLYARYQLSKNMSLRLDYRYERYSDTD 600 (637)
T ss_pred cEEEeeeEEEecCccceEeecccccCCCCceeeEEEEEEEEEEEeCCCeEEEEEEEEEeeeccc
Confidence 3566666666543322111 1112345667777888889999999999999999999876654
No 30
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=45.46 E-value=50 Score=27.60 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=38.9
Q ss_pred CCCcEEEEEEEeeCCceEEEEEecCcCC--ChhHHHHHhcCCCCcccCHHHHHHHHHHH
Q 005225 202 TRDGIRLVFQVEPNQEFHGLVCEGANVL--PTKFVEDAFRDGYGKVVNIRRLDEVITSI 258 (707)
Q Consensus 202 ~~~~v~l~~~V~EG~~~~~I~~~G~~~~--~~~~L~~~~~~~~g~~~~~~~l~~~~~~I 258 (707)
+.+.+.+.++|+.|. |++|.|.|.-.. +-++|.+.+ .|.+|+.+.+.+.++.+
T Consensus 14 ~~G~v~v~~~V~~G~-I~~i~i~gDf~~~~~i~~le~~L---~G~~~~~~~i~~~l~~~ 68 (86)
T PF10437_consen 14 PWGTVEVHLNVKNGI-IKDIKIYGDFFGPEDIEELEEAL---IGCPYDREAIKEALNSV 68 (86)
T ss_dssp TTEEEEEEEEEETTE-EEEEEEEECBS-CCCHHHHHHHH---TTCBSSHHHHHHHHHHC
T ss_pred CCceEEEEEEEECCE-EEEEEEECCCCCchHHHHHHHHH---HhcCCCHHHHHHHHHHh
Confidence 346799999998764 889999986332 234555544 78999999999887765
No 31
>PRK09408 ompX outer membrane protein X; Provisional
Probab=44.62 E-value=1.7e+02 Score=28.08 Aligned_cols=38 Identities=29% Similarity=0.802 Sum_probs=26.6
Q ss_pred CceeeEEEEEEEcCcccEEEEEEEeC-----CCCcEEEEEeeec
Q 005225 668 SGYGYGFGIRVDSPLGPLRLEYAFND-----KQAKRFHFGVGYR 706 (707)
Q Consensus 668 ~~~s~G~GlR~~tp~Gpirld~a~~~-----~~~~~f~FsiG~~ 706 (707)
..+++|+|+.|. |.-.+-+|.+|-- .+...|..++|||
T Consensus 128 ~g~~yGAGvq~n-p~~nv~id~~Ye~S~~~~~~~~~~~vGvgYr 170 (171)
T PRK09408 128 YGFSYGAGLQFN-PMENVALDFSYEQSRIRSVDVGTWIAGVGYR 170 (171)
T ss_pred ccEEEEeeEEEE-ecCCEEEEEEEEEeecCCcccceEEEeeEEE
Confidence 456788888887 4455666666532 2467899999987
No 32
>PRK10775 cell division protein FtsQ; Provisional
Probab=38.95 E-value=98 Score=32.28 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=51.3
Q ss_pred EEEEEEEEeccccCCCCCCCCCCHHHHHhhc-cc-CCCCccchhhHHHHHHHHHhCCCCccceeeeccCCCCCeEEEEEE
Q 005225 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQL-TT-KKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMN 367 (707)
Q Consensus 290 ~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l-~l-~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~~~~~~vdl~i~ 367 (707)
.|.+|.|. |+. ..+..+.|+..+ .. .+|..++ -+++...++|.+++...+|.|.-.. |+ .|.|.
T Consensus 57 pl~~V~V~------G~~--~~~~~~~I~~~i~~~~~~g~f~~-~Dl~~i~~~l~~lPWV~~a~VrR~w---Pd--tL~V~ 122 (276)
T PRK10775 57 PLSKLVVT------GER--HYTTNDDIRQAILALGAPGTFMT-QDVNIIQQQIERLPWIKQVSVRKQW---PD--ELKIH 122 (276)
T ss_pred ceeEEEEe------CCe--eeCCHHHHHHHHhhccCCCCceE-EcHHHHHHHHHcCCCeeEEEEEEeC---CC--cEEEE
Confidence 56678888 884 346677777654 33 5677774 4788888999999999999887653 44 56888
Q ss_pred EEEcCC
Q 005225 368 VVERPS 373 (707)
Q Consensus 368 V~E~~~ 373 (707)
|+|..+
T Consensus 123 V~Er~P 128 (276)
T PRK10775 123 LVEYVP 128 (276)
T ss_pred EEEeec
Confidence 889876
No 33
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=37.27 E-value=84 Score=34.48 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=47.5
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCc---cCHHHHHHHHHHHH-HcCCCceeeeeEEeCCCcEEEEEEEe
Q 005225 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSA---LTVREVQEDVHRII-DSGYFCSCMPVAVDTRDGIRLVFQVE 213 (707)
Q Consensus 138 ~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~---~~~~~l~~d~~~l~-~~GYf~a~v~~~v~~~~~v~l~~~V~ 213 (707)
.|=.|+|+| |...+++++.+.+.+. ++++|.. +|.+.|++.+..=. +--+ |.+.+ .+.++.++|.
T Consensus 104 fIW~IeI~G--n~~~t~~~i~~~L~e~--Gi~~G~~k~~id~~~ie~~l~~~~~~i~W----V~v~i---~GTrl~i~v~ 172 (382)
T TIGR02876 104 FIWKIDITG--VKGETPYEIRKQLKEM--GIKPGVWKFSVDVYKLERKLLDRVPEIMW----AGVRV---RGTTLVIKVV 172 (382)
T ss_pred eEEEEEEEC--CCCCCHHHHHHHHHHc--CCCcCeeeCCCCHHHHHHHHHhhCCCcEE----EEEEE---EeEEEEEEEE
Confidence 677899999 9999999999887433 7888866 89999987655321 1111 22233 3567888888
Q ss_pred eCC
Q 005225 214 PNQ 216 (707)
Q Consensus 214 EG~ 216 (707)
|..
T Consensus 173 Ek~ 175 (382)
T TIGR02876 173 EKQ 175 (382)
T ss_pred ecC
Confidence 864
No 34
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=34.63 E-value=1.1e+02 Score=33.69 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=51.3
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHH--HHHHHHHHHcCCCceeeeeEEe-------CCCcEEE
Q 005225 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREV--QEDVHRIIDSGYFCSCMPVAVD-------TRDGIRL 208 (707)
Q Consensus 138 ~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l--~~d~~~l~~~GYf~a~v~~~v~-------~~~~v~l 208 (707)
+|+.|.|.| +++-.++.|.+++.. +.....+.+... .+...+|++.|-|+++.. .+| .+++..|
T Consensus 37 ~v~~V~v~G--l~~Tkdd~I~k~v~~----~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~-~iD~~~g~~~~p~~~~V 109 (457)
T KOG2602|consen 37 RVDHVIVSG--LERTKDDFIMKEVDL----VFKAKNLQELLLASHEAASNLRALGIFDSVNI-LIDTKEGSDALPGGLVV 109 (457)
T ss_pred eeeEEEecc--ccccchHHHHHHhhh----hhhcchHHHHHHHHHHHHHHHHHhccccccee-eeccccCCCCCCCceeE
Confidence 899999999 888888988887642 222333444333 334455678999986543 332 3567899
Q ss_pred EEEEeeCCceE
Q 005225 209 VFQVEPNQEFH 219 (707)
Q Consensus 209 ~~~V~EG~~~~ 219 (707)
+|.|.|-++..
T Consensus 110 t~~v~E~kr~t 120 (457)
T KOG2602|consen 110 TFLVTEPKRLT 120 (457)
T ss_pred EEEeeecchhe
Confidence 99999998844
No 35
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=34.02 E-value=1.3e+02 Score=27.55 Aligned_cols=83 Identities=22% Similarity=0.333 Sum_probs=45.9
Q ss_pred EEEEeEEEEEecCCceeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEEEEEEc-CcccEEEEEEEeC------C
Q 005225 622 YVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVDS-PLGPLRLEYAFND------K 694 (707)
Q Consensus 622 ~~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~GlR~~t-p~Gpirld~a~~~------~ 694 (707)
.+.+.+.+++++.+.+.+.+.+-+|........ ...... .-...+...+|+|++|.. +---|+++|.+.. +
T Consensus 85 ~~~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~-~~~~~~-~~~~~~~~~~g~G~~y~~~~~~~l~~~y~~~~~~~~~~~ 162 (176)
T PF13505_consen 85 SIGLNAGYNFPLSDKFSPYVGAGYGYYYYEIDI-DDFSSS-DSDSGFGFGLGAGVEYNISDNFSLNAEYRYTFYDSNKND 162 (176)
T ss_dssp EEEEEEEEEEEESSSEEEEEEEEEEEEEEEECS-TSE--E-EEEEEEEEEEEEEEEEESSTTEEEEEEEEEEEE--E-TT
T ss_pred eeeeeEEEEeccCCcEEEEEEEeeEEEEEEEee-ccceec-cCCCceEEEEEEEEEEEECCCEEEEEEEEEEEEEeeccC
Confidence 466677778887766666666666654322110 000000 001135678888888883 4445566655431 1
Q ss_pred -CCcEEEEEeeec
Q 005225 695 -QAKRFHFGVGYR 706 (707)
Q Consensus 695 -~~~~f~FsiG~~ 706 (707)
....+.+++|++
T Consensus 163 ~~~~~~~~g~~y~ 175 (176)
T PF13505_consen 163 YDNNGFQLGVGYR 175 (176)
T ss_dssp EEEEEEEEEEEEE
T ss_pred CcEEEEEEEEEEE
Confidence 346788888875
No 36
>PF15603 Imm45: Immunity protein 45
Probab=31.90 E-value=89 Score=26.12 Aligned_cols=61 Identities=15% Similarity=0.304 Sum_probs=41.0
Q ss_pred EEEEEEeeCCceE---EEEEecCcC-----CChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc
Q 005225 207 RLVFQVEPNQEFH---GLVCEGANV-----LPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL 267 (707)
Q Consensus 207 ~l~~~V~EG~~~~---~I~~~G~~~-----~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY 267 (707)
.++|.+.+|..++ +.-+.++.. +-.+.+..--.+..+.+++...+++..++|.+++.++|.
T Consensus 9 ~i~~el~~G~~~~~~GE~l~~~~~~~~~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~ 77 (82)
T PF15603_consen 9 YITFELEEGARRKAQGEMLLTGNDNDGDFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGM 77 (82)
T ss_pred ceEEEecCCEEEEEeeeEEEeccCCCcCEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCce
Confidence 5778888887655 233332211 111223333356677899999999999999999999987
No 37
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=30.37 E-value=6.5e+02 Score=29.76 Aligned_cols=34 Identities=3% Similarity=-0.122 Sum_probs=26.1
Q ss_pred CCceEEEEEEEEEEEEeeCCCCeEEEEEEEEEEE
Q 005225 464 NSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (707)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~ 497 (707)
...|....+.+.+.+.|.+.+++.+.+.+.+++.
T Consensus 575 ~pdy~~~~~~l~l~a~Y~~~~~l~l~l~~~~eny 608 (649)
T TIGR03509 575 YPDYFSNQHRLKLYGKYQLSKSSSLRLDYRYERY 608 (649)
T ss_pred CCcccceEEEEEEEEEEecCCCeEEEEEEEEEEE
Confidence 4455555678888999999999998888866655
No 38
>PF11059 DUF2860: Protein of unknown function (DUF2860); InterPro: IPR016896 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.19 E-value=3.5e+02 Score=28.55 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=57.9
Q ss_pred EEeeeeecCCCcccceeeCCCCCccCCCCCccccceeEEEEeEEEEEecCC--ceeEEEEEEe--cccCCCCCCCCCCCC
Q 005225 585 LSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLG--PVEGVIFSDY--GTDLGSGPSVPGDPA 660 (707)
Q Consensus 585 ~~~G~~~g~lp~~e~F~lGG~~svRGy~~~~lg~G~~~~~~s~Elr~pl~~--~l~~~~F~D~--G~v~~~~~~~~~~~~ 660 (707)
....|.+|.. ..++|+|-. +. .+..|. +.+-+-||+.+.. .+.++.+--. |.+|.+..-.. ...
T Consensus 46 g~l~YTfg~~--~~q~f~Gts------~~-di~~g~--~~~elGy~~~l~~~~~~~~s~lpti~~~e~W~DPY~~~-~~R 113 (297)
T PF11059_consen 46 GNLQYTFGSG--NTQVFLGTS------RD-DIASGT--FALELGYRQQLGSGTVVDFSYLPTIMSGEVWEDPYLTG-QAR 113 (297)
T ss_pred EEEEEecCCC--CcEEEeCCC------hH-Hhhcce--eeeeeeeeeeccCCcEEEEEEeccCCCCccccCccccC-Ccc
Confidence 3455666655 689999863 23 333354 4455667777776 4566666555 89998754321 111
Q ss_pred CCCCCCCCceeeEEEEEEEcCcc-cEEEEEEEeC
Q 005225 661 GARLKPGSGYGYGFGIRVDSPLG-PLRLEYAFND 693 (707)
Q Consensus 661 ~~~~~~~~~~s~G~GlR~~tp~G-pirld~a~~~ 693 (707)
...-..+.|+.+.|....| |+.+|+|+..
T Consensus 114 ----~~Td~~~~g~Rl~~~~i~gs~fsl~~ay~~ 143 (297)
T PF11059_consen 114 ----QETDESGNGFRLQLDNIAGSPFSLDYAYAD 143 (297)
T ss_pred ----eeeeccceEEEEEEeecCCCcceEEEEeec
Confidence 1123457888888887666 9999999863
No 39
>PF04338 DUF481: Protein of unknown function, DUF481; InterPro: IPR007433 This family includes several proteins of uncharacterised function.
Probab=29.39 E-value=5.3e+02 Score=24.90 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=20.2
Q ss_pred EEEEEEEEEeeCC--C--CeEEEEEEEEEEEEeecC
Q 005225 471 RVTAGMEFSRPIR--P--KWSGTVGLIFQHSGARDE 502 (707)
Q Consensus 471 ~~~~~~~l~~~~~--~--~~~~~lg~~~~~~~~~~~ 502 (707)
+..++++++|.+. + .+.+.+|+.+++.+....
T Consensus 85 r~~~~~G~Gy~~~~~~~~~l~~~~G~~~~~~~~~~~ 120 (210)
T PF04338_consen 85 RYTLGAGLGYRLINTDRHKLSVEAGPGYRYEDYTDG 120 (210)
T ss_pred EEEEEeEeeEEEEECCCEEEEEEECCcEEEEEeccc
Confidence 4456666777663 3 456677777777766544
No 40
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=28.35 E-value=1.4e+02 Score=30.93 Aligned_cols=116 Identities=10% Similarity=0.138 Sum_probs=64.8
Q ss_pred ceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCc---cCHHHHHHHHHHHHHcCCCc-eeeeeEEeCCCcEEEEEEE
Q 005225 137 VLISEVLVRNKDGEELERKDLETEALTALKACRANSA---LTVREVQEDVHRIIDSGYFC-SCMPVAVDTRDGIRLVFQV 212 (707)
Q Consensus 137 ~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~---~~~~~l~~d~~~l~~~GYf~-a~v~~~v~~~~~v~l~~~V 212 (707)
..|++|.++| |..++++++.+.+ .+..+.. +|...+++.++ +.-+-. +.|.... ++ +|.+.|
T Consensus 60 ~~i~~v~v~G--n~~~s~~~I~~~~-----~l~~~~~~~~ld~~~~~~~i~---~~PwVk~a~V~r~~--Pn--tv~I~v 125 (269)
T COG1589 60 FPIRKVSVSG--NNQVSEEDILKAL-----GLDGGTSFLTLDLNAIRENIE---KLPWVKSAEVRRQF--PN--TLEIEV 125 (269)
T ss_pred ccceEEEEec--CcccCHHHHHHHh-----hhccCCceEEEcHHHHHHHHH---hCCCeEEEEEEEeC--CC--cEEEEE
Confidence 4799999999 8999988888754 3444444 44455554444 444432 2222212 22 588888
Q ss_pred eeCCceE---------EEEEecCcC-CChhHHH--HHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc
Q 005225 213 EPNQEFH---------GLVCEGANV-LPTKFVE--DAFRDGYGKVVNIRRLDEVITSINGWYMERGL 267 (707)
Q Consensus 213 ~EG~~~~---------~I~~~G~~~-~~~~~L~--~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY 267 (707)
+|.+++- -|.-.|+.. .+.. .. ..+..-.|.......+.+..+.+..+.+..++
T Consensus 126 ~Er~piA~w~~~~~~~~i~~~G~~~~~~~~-~~~~~~lp~~~g~~~~~~~v~~~~~~~~~~~~~~~~ 191 (269)
T COG1589 126 VEREPIAYWQRNDDYHLIDENGNLFIVPSD-RPKLPVLPLLVGPEGADPKVKALLEQLSALLALLGE 191 (269)
T ss_pred EEeeeEEEEecCCCcceEcCCCcEEeccCC-cccccceeeccCCchhhHHHHHHHHHHHHHHHhhcc
Confidence 8888753 133455311 1221 11 12333345445556666666666667777777
No 41
>PRK10808 outer membrane protein A; Reviewed
Probab=26.16 E-value=4.4e+02 Score=28.39 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=35.6
Q ss_pred EEEeEEEEEecCCceeEEEEEEecccCCCCCCCC-CCCCCCCCCCCCceeeEEEEEEE-cCcccEEEEEEEe
Q 005225 623 VVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVP-GDPAGARLKPGSGYGYGFGIRVD-SPLGPLRLEYAFN 692 (707)
Q Consensus 623 ~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~~~~-~~~~~~~~~~~~~~s~G~GlR~~-tp~Gpirld~a~~ 692 (707)
+.+++-+.||+...+.+.+-+-++. |....... ........+..+.+.+|+|+.|. ++-.-++++|-+-
T Consensus 100 ~~l~~~~~~~~~~~~~~Y~k~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~~~~~~~~~~ey~~~ 170 (351)
T PRK10808 100 VQLTAKLGYPITDDLDVYTRLGGMV-WRADTKSNVPGARGKDHDTGVSPVFAGGVEYAITKNWATRLEYQWT 170 (351)
T ss_pred eEEEEEeeeecCCccceeecceeeE-EecccccccccccccccCcceeeEEEEEEEEEecCCeeEEEEEEEE
Confidence 4566667778776554443333332 32211000 00000001124566788999888 6667788988763
No 42
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=23.14 E-value=5.6e+02 Score=23.11 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=22.7
Q ss_pred EEEEEEEEEEEEeeCCCCeEEEEEEEEEEE
Q 005225 468 TIGRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (707)
Q Consensus 468 ~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~ 497 (707)
+.....+++++.++++++|.+.+++++...
T Consensus 127 ~~~~~~~g~G~~y~~~~~~~l~~~y~~~~~ 156 (176)
T PF13505_consen 127 SGFGFGLGAGVEYNISDNFSLNAEYRYTFY 156 (176)
T ss_dssp EEEEEEEEEEEEEESSTTEEEEEEEEEEEE
T ss_pred CceEEEEEEEEEEEECCCEEEEEEEEEEEE
Confidence 344566677888999999999888877544
No 43
>PF06316 Ail_Lom: Enterobacterial Ail/Lom protein; InterPro: IPR000758 Virulence-related outer membrane proteins are expressed in Gram-negative bacteria and are essential to bacterial survival within macrophages and for eukaryotic cell invasion. Members of this group include: PagC, required by Salmonella typhimurium for survival in macrophages and for virulence in mice [] Rck outer membrane protein of the S. typhimurium virulence plasmid [] Ail, a product of the Yersinia enterocolitica chromosome capable of mediating bacterial adherence to and invasion of epithelial cell lines [] OmpX from Escherichia coli that promotes adhesion to and entry into mammalian cells. It also has a role in the resistance against attack by the human complement system [] a Bacteriophage lambda outer membrane protein, Lom [] The crystal structure of OmpX from E. coli reveals that OmpX consists of an eight-stranded antiparallel all-next-neighbour beta barrel []. The structure shows two girdles of aromatic amino acid residues and a ribbon of nonpolar residues that attach to the membrane interior. The core of the barrel consists of an extended hydrogen-bonding network of highly conserved residues. OmpX thus resembles an inverse micelle. The OmpX structure shows that the membrane-spanning part of the protein is much better conserved than the extracellular loops. Moreover, these loops form a protruding beta sheet, the edge of which presumably binds to external proteins. It is suggested that this type of binding promotes cell adhesion and invasion and helps defend against the complement system. Although OmpX has the same beta-sheet topology as the structurally related outer membrane protein A (OmpA) IPR000498 from INTERPRO, their barrels differ with respect to the shear numbers and internal hydrogen-bonding networks.; GO: 0009279 cell outer membrane
Probab=20.11 E-value=1.1e+02 Score=29.94 Aligned_cols=37 Identities=27% Similarity=0.685 Sum_probs=28.2
Q ss_pred ceeeEEEEEEEcCcccEEEEEEEeC-----CCCcEEEEEeeec
Q 005225 669 GYGYGFGIRVDSPLGPLRLEYAFND-----KQAKRFHFGVGYR 706 (707)
Q Consensus 669 ~~s~G~GlR~~tp~Gpirld~a~~~-----~~~~~f~FsiG~~ 706 (707)
...+|+|+.++ |...+-+|++|-- .....|..+||+|
T Consensus 157 slAy~AGvQ~N-p~e~v~iDv~YEgS~~Gd~~~nGF~vGvGYr 198 (199)
T PF06316_consen 157 SLAYGAGVQFN-PNENVVIDVGYEGSGSGDWRTNGFNVGVGYR 198 (199)
T ss_pred eeeecccEEEc-CCccEEEEEEeeccccCCceeCCEEEeeeec
Confidence 45677777665 8899999999953 2456899999987
Done!