Query 005225
Match_columns 707
No_of_seqs 340 out of 2261
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 19:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdz_A TPSB transporter FHAC; 100.0 3.2E-47 1.1E-51 435.9 48.1 458 211-706 49-553 (554)
2 3mc9_A ALR2269 protein; polype 100.0 1.3E-28 4.6E-33 259.9 17.0 236 129-372 54-308 (316)
3 2x8x_X TLR1789 protein, OMP85; 100.0 4E-27 1.4E-31 238.8 22.7 231 134-373 2-235 (235)
4 2qdf_A OMP85, outer membrane p 99.9 1.3E-25 4.6E-30 240.2 24.9 235 129-376 68-333 (335)
5 3efc_A OMP85, outer membrane p 99.9 7.5E-26 2.6E-30 247.5 21.2 234 130-376 68-332 (395)
6 3efc_A OMP85, outer membrane p 99.9 5.2E-25 1.8E-29 240.8 11.3 211 130-356 151-388 (395)
7 2qdf_A OMP85, outer membrane p 99.9 9.1E-21 3.1E-25 202.6 23.4 221 135-376 6-252 (335)
8 3q6b_A Outer membrane protein 99.8 6.7E-19 2.3E-23 172.0 17.0 151 211-370 28-189 (189)
9 3q6b_A Outer membrane protein 99.5 4.7E-13 1.6E-17 130.4 18.3 132 130-272 28-168 (189)
10 2x8x_X TLR1789 protein, OMP85; 99.3 4E-11 1.4E-15 120.7 16.0 148 130-289 70-233 (235)
11 2qdz_A TPSB transporter FHAC; 99.2 6.8E-10 2.3E-14 126.4 24.0 260 134-451 56-336 (554)
12 3mc9_A ALR2269 protein; polype 99.1 3.8E-10 1.3E-14 118.7 15.0 153 210-378 54-226 (316)
13 2vh1_A FTSQ, cell division pro 65.0 16 0.00055 35.0 7.9 70 291-373 1-72 (220)
14 2vh2_A FTSQ, cell division pro 54.7 18 0.00063 35.7 6.3 71 290-373 27-98 (255)
15 2vh1_A FTSQ, cell division pro 39.8 64 0.0022 30.7 7.4 72 139-219 1-74 (220)
16 3nb3_A Outer membrane protein 32.4 1.1E+02 0.0038 31.0 8.4 82 621-706 96-190 (346)
17 2vh2_A FTSQ, cell division pro 27.8 62 0.0021 31.7 5.1 75 135-218 24-99 (255)
No 1
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=100.00 E-value=3.2e-47 Score=435.91 Aligned_cols=458 Identities=14% Similarity=0.101 Sum_probs=345.2
Q ss_pred EEee---CCceE--EEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-eeEeeeE-EEeeCcEEE
Q 005225 211 QVEP---NQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV-EILSGGIIR 283 (707)
Q Consensus 211 ~V~E---G~~~~--~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~-~~~~~~~v~ 283 (707)
...| |++++ +|+|+|++.+++++|++.+..++|++|+.+.|++++++|+++|+++|| +++|... +...++.|+
T Consensus 49 ~~~e~~~g~~~~i~~I~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g~l~ 128 (554)
T 2qdz_A 49 RKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLK 128 (554)
T ss_dssp ----CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETTEEE
T ss_pred CCccccCCceEEEEEEEEECCccCCHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccccCCEEE
Confidence 3468 88865 999999999999999999999999999999999999999999999999 5887654 344678899
Q ss_pred EEEeeeEEEEEEEEeccccCCCCCCCCCCHHHHHh---hcccCCCCccchhhHHHHHHHHHhCCCCccceeeeccCCCCC
Q 005225 284 LQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILR---QLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTG 360 (707)
Q Consensus 284 i~I~eg~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r---~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~~~~~ 360 (707)
|.|.||+|++|.|+ |+. ++++.+|++ ++++++|++|+.++|++++++|.+++ ..|.+.+.|...++
T Consensus 129 i~v~eG~i~~I~i~------G~~---~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~~--~~v~~~~~p~~~~g 197 (554)
T 2qdz_A 129 LKVEWGRIKGWLID------GKP---LEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGG--KTGNITIVPADEYG 197 (554)
T ss_dssp EEEECCEEEEEEET------TEE---CCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSS--EEEEEEEEECSSTT
T ss_pred EEEEeEEEEEEEEC------CCC---ccchhhhhhhhhhccccCCCcCCHHHHHHHHHHHhcCc--hhceEEEecCCCCC
Confidence 99999999999998 984 889999999 99999999999999999999999998 66888888876789
Q ss_pred eEEEEEEEEEcCCceEEEeeeeec--CccCCCccceEEEEEEEecCCCCCCeEEEEEEEEce-------eeEEEEEEEee
Q 005225 361 KVDLIMNVVERPSGGFSAGGGISS--GITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQ-------IDSIFRINYTD 431 (707)
Q Consensus 361 ~vdl~i~V~E~~~~~~~~g~gyss--~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g~-------~~~~~~l~y~~ 431 (707)
.++|+|+|+|++++.+.++++... ... ..++++.+.+.++|++|.|+++++++..+. ..+.+.++|+.
T Consensus 198 ~~~l~v~v~e~~~~~~~~g~~~~g~g~~~---tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~ 274 (554)
T 2qdz_A 198 YSYLDLQLQRRALPRVSLGMDNSGPGTPE---NGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSV 274 (554)
T ss_dssp EEEEEEEEEECCSCEEEEEEEECSCSSSC---SSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEE
T ss_pred eeEEEEEEeeCCcEEEEEEEcCCCCCCCC---ccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEE
Confidence 999999999998877666665432 111 134889999999999999999999999985 67889999999
Q ss_pred ccccCCCCceEEEEEEEeeecCCccccCCCCCCCceEEEEEEEEEEEEeeC--CCCeEEEEEEEEEEEEeecC-CCC-c-
Q 005225 432 PWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPI--RPKWSGTVGLIFQHSGARDE-KGN-P- 506 (707)
Q Consensus 432 P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~lg~~~~~~~~~~~-~~~-~- 506 (707)
|+.. +.+.+.+.+.++...+ .+ ......|...+.++++.+++++ ...+++++++.+.+.+..+. .+. .
T Consensus 275 P~~~-----~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
T 2qdz_A 275 PLGR-----TRLDLQTGYSTYRNLL-KT-RYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLD 347 (554)
T ss_dssp EETT-----EEEEEEEEEEEEECCC-SS-SSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTSCC
T ss_pred EEec-----CeEEEEEEEeEEEEEc-cC-CcceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcCcc
Confidence 9863 3455544444322111 11 1122346677788889999988 45676777777666655431 111 1
Q ss_pred -ccccccCCceeEeeeccCc--ceeeeeeeeecCCCC-CCCceEEEEEEeccccCCCcceEEEEEEEEEEEEEe--cCc-
Q 005225 507 -IIKDFYSSPLTASGKTNDE--MLIAKFESVYTGSGD-QGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEI--GPA- 579 (707)
Q Consensus 507 -~~~~~~~~~l~~~~d~~D~--~~~P~~g~~~~~~G~-~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l--~~~- 579 (707)
.........++++|++++. .+.+..+... |. .+. ....+. ...+++..|.|+.+++++|+|+ ...
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---G~~~~a---~~~~~~--~~~~~~~~f~k~~~~~~~~~~~~~~~~~ 419 (554)
T 2qdz_A 348 VSSKHYSDVTVGMQYSTQRGANAYFGDLSFTR---GVGVNN---GKYAAY--DERGPQGNVSRFNGSLAWTRYMALAGQP 419 (554)
T ss_dssp CEEEEEEEEEEEEEEEEECSSEEEEEEEEEEE---CCCC-------------------CCCEEEEEEEEEEEEEEETTEE
T ss_pred ccCceEEEEEEEEEEEEEecCeEEEEEEEEEe---cCCCCC---CcCccc--ccCCCcceEEEEEEEEEEEEEccccCCC
Confidence 1112334567778887764 4455433221 11 000 000000 0112467899999999999997 233
Q ss_pred -eEEEEEEeeeeecCCCcccceeeCCCCCccCCCCCccccceeEEEEeEEEEEec-----C--CceeEEEEEEecccCCC
Q 005225 580 -RLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPM-----L--GPVEGVIFSDYGTDLGS 651 (707)
Q Consensus 580 -~l~~~~~~G~~~g~lp~~e~F~lGG~~svRGy~~~~lg~G~~~~~~s~Elr~pl-----~--~~l~~~~F~D~G~v~~~ 651 (707)
.+.+++.+++..+++|++|+|++||.++||||+++.++||+.++.+++|||||+ . ..+.+++|+|+|++|+.
T Consensus 420 ~~~~~~~~~q~~~~~lp~~e~f~lGG~~sVRGy~~~~l~pGd~g~~~~~El~~~~~~~~~~~~~~~~~~~F~D~G~v~~~ 499 (554)
T 2qdz_A 420 IQWASQLGFQYSRQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSN 499 (554)
T ss_dssp EEEEEEEEEEECSSCSSSSEECCSCCCCCCTTCCCCCSCCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEEEEEEEECS
T ss_pred EEEEEEEEeEecCCCCCcHHhEecCCCCeECCcccccccCCCccEEEEEEEEeeccccccCccceEEEEEEEEEEEEecC
Confidence 566777778777789999999999999999999999987999999999999996 2 36899999999999986
Q ss_pred CCCCCCCCCCCCCCCCCceeeEEEEEEEcCcccEEEEEEEeCC-------CCcEE-EEEeeec
Q 005225 652 GPSVPGDPAGARLKPGSGYGYGFGIRVDSPLGPLRLEYAFNDK-------QAKRF-HFGVGYR 706 (707)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~s~G~GlR~~tp~Gpirld~a~~~~-------~~~~f-~FsiG~~ 706 (707)
.... ..+++.|+|+|+||.+|+||++||||++++ +..+| ||+||++
T Consensus 500 ~~~~---------~~~~~~g~G~Glr~~~~~~~l~l~~a~pl~~~~~~~~~~~~~~~fsig~~ 553 (554)
T 2qdz_A 500 HPDA---------RTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLS 553 (554)
T ss_dssp SSSC---------CEEEEEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEE
T ss_pred CCCC---------CCCEEEEEEEEEEEecCcEEEEEEEEeeccCCcccccCCceEEEEEEEEE
Confidence 4311 114679999999999999999999999852 35789 9999975
No 2
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.96 E-value=1.3e-28 Score=259.89 Aligned_cols=236 Identities=33% Similarity=0.584 Sum_probs=133.3
Q ss_pred ccccccCcceEEEEEEEeCCC----CccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHHHcCCCceeeeeEEe-CC
Q 005225 129 VSRSDEERVLISEVLVRNKDG----EELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVD-TR 203 (707)
Q Consensus 129 ~~~~~~e~~~I~~I~~~G~~N----~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~~~GYf~a~v~~~v~-~~ 203 (707)
...++|++++|++|.|+| | ..++++.|.+ .+ .+++|+.|+.+.+++|+++|++.|||. .|.+..+ .+
T Consensus 54 ~~~~Eg~~~~I~~I~i~G--n~~~~~~~~~~~l~~----~l-~~k~G~~~~~~~l~~di~~L~~~GyF~-~V~v~~~~~~ 125 (316)
T 3mc9_A 54 TPETTEPRVLVSEVLVRP--QSGQLTPELETQVYN----VI-RTQPGRTTTRSQLQEDINAIFGTGFFS-NVQASPEDTP 125 (316)
T ss_dssp ----CCCCEEEEEEEEEE--SSSCCCHHHHHHHHH----HC-CCCTTSEECHHHHHHHHHHHHHTSCEE-EEEEEEEEET
T ss_pred CCCCCCCceEEEEEEEEC--CcccccccCHHHHHh----hc-cCCCCCccCHHHHHHHHHHHHHCCCce-EEEEEEecCC
Confidence 367899999999999999 8 5666666554 34 699999999999999999999999995 4554443 45
Q ss_pred CcEEEEEEEeeCCceEEEEEecC------cCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-eeEeee-EE
Q 005225 204 DGIRLVFQVEPNQEFHGLVCEGA------NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSG-VE 275 (707)
Q Consensus 204 ~~v~l~~~V~EG~~~~~I~~~G~------~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~-~~ 275 (707)
+++.|+|.|+||+.+++|.|.|+ +.++.+.|++.+.+++|++|+...|++++++|+++|+++|| +++|.. .+
T Consensus 126 ~~v~l~~~V~egp~I~~I~~~Gn~~~~~~~~~~~~~L~~~l~l~~G~~~n~~~l~~~~~~I~~~y~~~GY~~A~V~~~~~ 205 (316)
T 3mc9_A 126 LGVRVSFIVQPNPVLSKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQ 205 (316)
T ss_dssp TEEEEEEEEEECCBCCEEEEECCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSCE
T ss_pred CeEEEEEEEecCceEEEEEEeccccccccccCCHHHHHHHhcccCCCeeCHHHHHHHHHHHHHHHHHCCCeeEEeeeccE
Confidence 78999999999999999999999 88899999999999999999999999999999999999999 699874 44
Q ss_pred EeeCcEEEEEEeeeEEEEEEEEecccc------CCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCccc
Q 005225 276 ILSGGIIRLQVAEAEVNNISIRFLDRK------TGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDV 349 (707)
Q Consensus 276 ~~~~~~v~i~I~eg~i~~I~i~~~~~~------~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V 349 (707)
...++.|+|.|+||+|++|.|...+.+ +|+++..++++.+|+|++.+++|++|+.++|++++++|+++|+|+.|
T Consensus 206 ~~~~g~l~i~V~eG~i~~i~v~~i~~~Gn~~~~~Gn~i~~~t~~~vI~r~l~~~~G~~yn~~~l~~~~~~L~~lg~F~~V 285 (316)
T 3mc9_A 206 VSENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFNRNTVQKDLQRVFGTGLFEDV 285 (316)
T ss_dssp ECTTSEEEEEEECCEEC---------------------------------------------------------------
T ss_pred ECCCCEEEEEEEcCccccEEEEEEeccccccccCCcccccccCHHHHHhhhccCCCCcCCHHHHHHHHHHHHcCCCccee
Confidence 556678999999998877766522111 14411137899999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCeEEEEEEEEEcC
Q 005225 350 SIIPQPAGDTGKVDLIMNVVERP 372 (707)
Q Consensus 350 ~i~~~~~~~~~~vdl~i~V~E~~ 372 (707)
.+.+.+...++++||.|+|+|+.
T Consensus 286 ~v~~~p~~~~~~vdl~v~v~e~~ 308 (316)
T 3mc9_A 286 NVSLDPGTDPTKVNVVVNVVERS 308 (316)
T ss_dssp -----------------------
T ss_pred eEEeecCCCCCeEEEEEEEEEcc
Confidence 99988876789999999999975
No 3
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=99.95 E-value=4e-27 Score=238.77 Aligned_cols=231 Identities=32% Similarity=0.527 Sum_probs=193.4
Q ss_pred cCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHHHcCCC-ceeeeeEEeCCCcEEEEEEE
Q 005225 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYF-CSCMPVAVDTRDGIRLVFQV 212 (707)
Q Consensus 134 ~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~~~GYf-~a~v~~~v~~~~~v~l~~~V 212 (707)
++++.|++|.|+| |+....+.++. .+ .+++|+.|+++.+++|+++|++.||| ++.+.... .++++.|+|.|
T Consensus 2 ~~~~~I~~I~i~G--~~~~~~~~i~~----~l-~~~~g~~~~~~~~~~~~~~L~~~Gyf~~~~v~~~~-~~~~~~l~~~v 73 (235)
T 2x8x_X 2 EPKVLIAEVVVEG--ATPELEQLVYQ----VI-STRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRD-TPLGVRITFVV 73 (235)
T ss_dssp CCCEEEEEEEEES--CCHHHHHHHHH----HC-CCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEEE-ETTEEEEEEEE
T ss_pred CCccEEEEEEEEC--CCccCHHHHHH----hh-ccCCCCccCHHHHHHHHHHHHHCCCcEEEEEEEec-CCCcEEEEEEE
Confidence 6788999999999 77655444443 44 68999999999999999999999996 66665443 35678999999
Q ss_pred eeCCceEEEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-eeEeeeEE-EeeCcEEEEEEeeeE
Q 005225 213 EPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGVE-ILSGGIIRLQVAEAE 290 (707)
Q Consensus 213 ~EG~~~~~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~~-~~~~~~v~i~I~eg~ 290 (707)
+|||.+.+|.|+|+..++.+.|.+.+.+++|++|+...+++++++|.++|+++|| +++|.... ...++.|++.|.||.
T Consensus 74 ~eg~~i~~i~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~~l~~~v~eG~ 153 (235)
T 2x8x_X 74 RPYPVLRAVQVAGNQVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGV 153 (235)
T ss_dssp EECCBCCEEEEESCSSSCHHHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTTSEEEEEEECCB
T ss_pred EecceEEEEEEECCccCCHHHHHHHhCccCCCCcCHHHHHHHHHHHHHHHHhCCCeeEEEEeecccCCCcEEEEEEEeCc
Confidence 9999888999999999999999999999999999999999999999999999999 58887653 334568999999997
Q ss_pred EEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCccceeeeccCCCCCeEEEEEEEEE
Q 005225 291 VNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVE 370 (707)
Q Consensus 291 i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~~~~~~vdl~i~V~E 370 (707)
+.+|.|.-.. -.|+....++++.+|++.+.+++|++|+.+++++++++|.++|||+.|.+.+.+...++.++|.|.|+|
T Consensus 154 ~~~i~i~~i~-~~G~~~~~~~~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~~~g~f~~v~i~~~~~~~~~~~~l~i~v~e 232 (235)
T 2x8x_X 154 VEQVTYRFLN-KEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDVQVALEPGQNPRRVNLILNIKE 232 (235)
T ss_dssp EEEEEEEEBC-TTSCBCCCCSCHHHHHTTCSCCTTSBCCHHHHHHHHHHHHHHTCEEEEEEEEEECSSTTSEEEEEEEEE
T ss_pred eEEEEEEEec-ccCCcCCCccchhheeeeeecCCCCccCHHHHHHHHHHHHhcCCcccceEEeccCCCCCeeEEEEEEEe
Confidence 6666542110 126510027899999999999999999999999999999999999999988887656789999999999
Q ss_pred cCC
Q 005225 371 RPS 373 (707)
Q Consensus 371 ~~~ 373 (707)
+++
T Consensus 233 ~~t 235 (235)
T 2x8x_X 233 RNT 235 (235)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 4
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=99.94 E-value=1.3e-25 Score=240.21 Aligned_cols=235 Identities=13% Similarity=0.209 Sum_probs=200.0
Q ss_pred ccccccCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHH----HcCCCceeeeeEEe--C
Q 005225 129 VSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAVD--T 202 (707)
Q Consensus 129 ~~~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~----~~GYf~a~v~~~v~--~ 202 (707)
-++++.|+|.|++|.|+| |+.+++++|++.+... +++.|..|++..++++.++|. ++|||++.|...+. +
T Consensus 68 l~~~V~e~p~I~~i~~~G--n~~~~~~~l~~~l~~~--~l~~g~~~~~~~~~~~~~~l~~~y~~~GY~~a~v~~~~~~~~ 143 (335)
T 2qdf_A 68 LLVQVKERPTIASITFSG--NKSVKDDMLKQNLEAS--GVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLP 143 (335)
T ss_dssp EEEEEEECCEEEEEEEES--CCSSCHHHHHHHHHTT--TCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEET
T ss_pred EEEEEEeccEEEEEEEEC--CccCCHHHHHHHHHhc--CCCCCcccCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC
Confidence 377888999999999999 9999999999866322 567999999999999999996 79999999987653 5
Q ss_pred CCcEEEEEEEeeCCceE--EEEEecCcCCChhHHHHHhcCCCC---------cccCHHHHHHHHHHHHHHHHhCCc-eeE
Q 005225 203 RDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGL-FGM 270 (707)
Q Consensus 203 ~~~v~l~~~V~EG~~~~--~I~~~G~~~~~~~~L~~~~~~~~g---------~~~~~~~l~~~~~~I~~~y~~~GY-~a~ 270 (707)
++.+.|+|.|+||++++ +|.|.|+..++++.|++.+.+++| ++|+...+++++++|+++|+++|| .++
T Consensus 144 ~~~~~v~~~i~eG~~~~i~~I~~~G~~~~~~~~l~~~~~~~~g~~~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~~~ 223 (335)
T 2qdf_A 144 RNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFN 223 (335)
T ss_dssp TTEEEEEEEEECCCBCEEEEEEEESCCSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTCE
T ss_pred CCeEEEEEEEecCCEEEEEEEEEECCccCCHHHHHHHhccCCCccccccccCCeeCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 67899999999999955 899999999999999999988887 999999999999999999999999 488
Q ss_pred eeeEEE-ee--Cc--EEEEEEeee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHH-
Q 005225 271 VSGVEI-LS--GG--IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL- 341 (707)
Q Consensus 271 V~~~~~-~~--~~--~v~i~I~eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~- 341 (707)
|..... .+ ++ .|++.|.|| +|++|.|. |+ ..+.+.+|++.+.+++|++|+.++++++.++|.
T Consensus 224 v~~~~~~~~~~~~~v~v~i~v~eG~~~~i~~I~i~------g~---~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~l~~ 294 (335)
T 2qdf_A 224 IDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVS------GN---LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKK 294 (335)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECCCCCEEEEEEEE------EE---CTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHH
T ss_pred EcCCEEEEcCCCCEEEEEEEEccCCcEEEEEEEEE------cc---ccCChHHHHHhcCCCCCCccCHHHHHHHHHHHHH
Confidence 875432 21 23 488999998 89999999 88 489999999999999999999999999999987
Q ss_pred ---hCCC-CccceeeeccCCCCCeEEEEEEEEEcCCceE
Q 005225 342 ---TMGI-MEDVSIIPQPAGDTGKVDLIMNVVERPSGGF 376 (707)
Q Consensus 342 ---~~G~-F~~V~i~~~~~~~~~~vdl~i~V~E~~~~~~ 376 (707)
+.|| |.+|.+.+.++..+++++|.+.|+|+++..+
T Consensus 295 ~~~~~Gy~f~~v~~~~~~~~~~~~vdv~i~v~e~~~~~v 333 (335)
T 2qdf_A 295 LLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYV 333 (335)
T ss_dssp HHHTTTBSSCEEEEEEEEETTTTEEEEEEEEECCCBCCC
T ss_pred HHHhCCCCceEEEEeeEecCCCCEEEEEEEEeeCCeEEe
Confidence 4698 8888877776556789999999999987654
No 5
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=99.94 E-value=7.5e-26 Score=247.48 Aligned_cols=234 Identities=13% Similarity=0.206 Sum_probs=200.6
Q ss_pred cccccCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHH----HHcCCCceeeeeEEe--CC
Q 005225 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVD--TR 203 (707)
Q Consensus 130 ~~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l----~~~GYf~a~v~~~v~--~~ 203 (707)
++++.|+|.|++|.|+| |+.+++++|++.+. .+ ++++|+.|++..+++++++| .++|||++.|...+. .+
T Consensus 68 ~~~v~e~p~I~~I~~~G--n~~~~~~~l~~~l~-~~-~~~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~ 143 (395)
T 3efc_A 68 LVQVKERPTIASITFSG--NKSVKDDMLKQNLE-AS-GVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR 143 (395)
T ss_dssp EEEEEECCEEEEEEEES--CTTSCHHHHHHHHH-HH-TCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBCTT
T ss_pred EEEEEEccEEEEEEEEC--CccCCHHHHHHHHH-hc-CCCCCCccCHHHHHHHHHHHHHHHHHcCccceEEEEEEEECCC
Confidence 78999999999999999 99999999998663 23 79999999999999999999 489999999987763 35
Q ss_pred CcEEEEEEEeeCCceE--EEEEecCcCCChhHHHHHhcCCCC---------cccCHHHHHHHHHHHHHHHHhCCce-eEe
Q 005225 204 DGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGLF-GMV 271 (707)
Q Consensus 204 ~~v~l~~~V~EG~~~~--~I~~~G~~~~~~~~L~~~~~~~~g---------~~~~~~~l~~~~~~I~~~y~~~GY~-a~V 271 (707)
+++.|+|.|+||++++ +|.|+||+.+++++|++.+.+++| ++|+.+.+++++++|+++|+++||+ ++|
T Consensus 144 ~~v~l~~~V~eG~~~~I~~I~~~Gn~~~~~~~L~~~~~~~~g~~~~~~~~~~~~~~~~l~~d~~~l~~~y~~~GY~~a~v 223 (395)
T 3efc_A 144 NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 223 (395)
T ss_dssp SEEEEEEEEECCCCCCCCCCEEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred CEEEEEEEEecCCeEEEEEEEEECCcccCHHHHHHHHhCCCCccchhhccCCccCHHHHHhHHHHHHHHHHhCCCceEEE
Confidence 6799999999999854 999999999999999999999999 9999999999999999999999995 888
Q ss_pred eeEEE--eeC--c-EEEEEEeee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHH----H
Q 005225 272 SGVEI--LSG--G-IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVE----T 339 (707)
Q Consensus 272 ~~~~~--~~~--~-~v~i~I~eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~----~ 339 (707)
.+... ..+ . .|++.|+|| +|++|.|. |+ ..+.++.|++.+.+++|++|+.++++++.+ .
T Consensus 224 ~~~~~~~~~~~~~v~v~i~V~eG~~y~i~~I~i~------Gn---~~~~~~~l~~~~~l~~G~~y~~~~l~~~~~~l~~~ 294 (395)
T 3efc_A 224 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVS------GN---LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKL 294 (395)
T ss_dssp EECCCEECTTSCSEECEEEEECCCCCEEEEECCB------SC---CTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHH
T ss_pred eccEEEECCCCcEEEEEEEEecCCCEEEEEEEEE------CC---CCCCHHHHHHHhccCCCCCcCHHHHHHHHHHHHHH
Confidence 76532 222 2 489999998 79999998 98 488899999999999999999999998854 4
Q ss_pred HHhCCC-CccceeeeccCCCCCeEEEEEEEEEcCCceE
Q 005225 340 VLTMGI-MEDVSIIPQPAGDTGKVDLIMNVVERPSGGF 376 (707)
Q Consensus 340 L~~~G~-F~~V~i~~~~~~~~~~vdl~i~V~E~~~~~~ 376 (707)
+.+.|| |..|.+.+..+..+++++|++.|.|+++..+
T Consensus 295 ~~~~GY~~~~v~~~~~~~~~~~~v~l~~~v~eG~~~~i 332 (395)
T 3efc_A 295 LGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYV 332 (395)
T ss_dssp HHHTTCSSCEEEEEEEEETTTTEEEEEEEEECCCCCCC
T ss_pred HHhCCCCccEEEEeeEecCCCCEEEEEEEEEeCCeEEE
Confidence 567899 4556654444456789999999999987543
No 6
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=99.91 E-value=5.2e-25 Score=240.80 Aligned_cols=211 Identities=14% Similarity=0.219 Sum_probs=134.5
Q ss_pred cccccCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCC---------CccCHHHHHHHHHHHH----HcCCCceee
Q 005225 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRAN---------SALTVREVQEDVHRII----DSGYFCSCM 196 (707)
Q Consensus 130 ~~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g---------~~~~~~~l~~d~~~l~----~~GYf~a~v 196 (707)
.|++|++++|.+|.|+| |+.+++++|++.+ .+++| ++|+++.+++|.++|. ++|||++.|
T Consensus 151 ~V~eG~~~~I~~I~~~G--n~~~~~~~L~~~~-----~~~~g~~~~~~~~~~~~~~~~l~~d~~~l~~~y~~~GY~~a~v 223 (395)
T 3efc_A 151 VFQEGVSAEIQQINIVG--NHAFTTDELISHF-----QLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 223 (395)
T ss_dssp EEECCCCCCCCCCEEES--CCSSCTTTTGGGC-----CCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred EEecCCeEEEEEEEEEC--CcccCHHHHHHHH-----hCCCCccchhhccCCccCHHHHHhHHHHHHHHHHhCCCceEEE
Confidence 67788889999999999 9999999998643 57788 9999999999999994 899999999
Q ss_pred eeE---Ee-CCCcEEEEEEEeeCCceE--EEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-ee
Q 005225 197 PVA---VD-TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FG 269 (707)
Q Consensus 197 ~~~---v~-~~~~v~l~~~V~EG~~~~--~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a 269 (707)
... +. +++.+.|+|.|+||++|+ +|.|.|+..++++.|++.+.+++|++|+...+++++++|.++|.++|| ++
T Consensus 224 ~~~~~~~~~~~~~v~v~i~V~eG~~y~i~~I~i~Gn~~~~~~~l~~~~~l~~G~~y~~~~l~~~~~~l~~~~~~~GY~~~ 303 (395)
T 3efc_A 224 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 303 (395)
T ss_dssp EECCCEECTTSCSEECEEEEECCCCCEEEEECCBSCCTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred eccEEEECCCCcEEEEEEEEecCCCEEEEEEEEECCCCCCHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 753 22 456899999999999976 899999999999999999999999999999999999999999999999 68
Q ss_pred EeeeEEEe--eCcE--EEEEEeee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHh
Q 005225 270 MVSGVEIL--SGGI--IRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342 (707)
Q Consensus 270 ~V~~~~~~--~~~~--v~i~I~eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~ 342 (707)
+|.+.... .++. |++.|.|| +|++|.|. || .++++++|+|++.+++|++|+.+++++++++|.+
T Consensus 304 ~v~~~~~~~~~~~~v~l~~~v~eG~~~~i~~I~i~------Gn---~~~~~~virr~~~~~~G~~y~~~~l~~~~~~L~~ 374 (395)
T 3efc_A 304 RVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFE------GN---DTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNR 374 (395)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECCCCCCC---------------------------------------------------
T ss_pred EEEEeeEecCCCCEEEEEEEEEeCCeEEEEEEEEE------CC---CcCChHHHhhhcccCCCccCCHHHHHHHHHHHHh
Confidence 88864332 2344 78899998 79999999 99 4999999999999999999999999999999999
Q ss_pred CCCCccceeeeccC
Q 005225 343 MGIMEDVSIIPQPA 356 (707)
Q Consensus 343 ~G~F~~V~i~~~~~ 356 (707)
+|||+.|++++.+.
T Consensus 375 lg~F~~V~i~~~~~ 388 (395)
T 3efc_A 375 LGFFETVDTDTQRV 388 (395)
T ss_dssp --------------
T ss_pred CCCcceeeeeccCC
Confidence 99999999987664
No 7
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=99.87 E-value=9.1e-21 Score=202.63 Aligned_cols=221 Identities=14% Similarity=0.265 Sum_probs=179.5
Q ss_pred CcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHHHcCCCceeeeeEEeCCCcEEEEEEEee
Q 005225 135 ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEP 214 (707)
Q Consensus 135 e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~~~GYf~a~v~~~v~~~~~v~l~~~V~E 214 (707)
+.+.|.+|.|+| |+.++.+.|+..+ .+++|+.+++..+++++++|++.|||+. |.+.. +++.|+|.|+|
T Consensus 6 ~~~~i~~i~v~G--~~~~~~~~i~~~l-----~~~~g~~~~~~~i~~~i~~L~~~g~f~~-v~v~~---~~~~l~~~V~e 74 (335)
T 2qdf_A 6 EGFVVKDIHFEG--LQRVAVGAALLSM-----PVRTGDTVNDEDISNTIRALFATGNFED-VRVLR---DGDTLLVQVKE 74 (335)
T ss_dssp CCEECCEEEEES--CSSSCHHHHHHTS-----SCCTTCEECHHHHHHHHHHHHTTSCEEE-EEEEE---ETTEEEEEEEE
T ss_pred CCceEeEEEEEC--CEEcCHHHHHHhc-----CCCCCCccCHHHHHHHHHHHHhCCCcce-EEEEe---CCCEEEEEEEe
Confidence 358899999999 8888888777533 7999999999999999999999999985 44432 23579999999
Q ss_pred CCceEEEEEecCcCCChhHHHHHhcCC---CCcccCHHHHHHHHHHHHHHHHhCCce-eEeeeEEEe-eCc--EEEEEEe
Q 005225 215 NQEFHGLVCEGANVLPTKFVEDAFRDG---YGKVVNIRRLDEVITSINGWYMERGLF-GMVSGVEIL-SGG--IIRLQVA 287 (707)
Q Consensus 215 G~~~~~I~~~G~~~~~~~~L~~~~~~~---~g~~~~~~~l~~~~~~I~~~y~~~GY~-a~V~~~~~~-~~~--~v~i~I~ 287 (707)
||++.+|.|+||+.+++++|++.+..+ .|++|+...++++.++|+++|+++||+ |+|...... +++ .|++.|+
T Consensus 75 ~p~I~~i~~~Gn~~~~~~~l~~~l~~~~l~~g~~~~~~~~~~~~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~~v~~~i~ 154 (335)
T 2qdf_A 75 RPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQ 154 (335)
T ss_dssp CCEEEEEEEESCCSSCHHHHHHHHHTTTCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETTTEEEEEEEEE
T ss_pred ccEEEEEEEECCccCCHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCeEEEEEEEe
Confidence 999999999999999999999988554 899999999999999999999999996 888865543 344 5899999
Q ss_pred ee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCC---------CccchhhHHHHHHHHH----hCCCCcccee
Q 005225 288 EA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKG---------QVYSMLQGKRDVETVL----TMGIMEDVSI 351 (707)
Q Consensus 288 eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G---------~~~~~~~l~~~~~~L~----~~G~F~~V~i 351 (707)
|| +|++|.|. |+ ....++.|++.+.+++| ++|+..+++++.++|. +.||+. +.+
T Consensus 155 eG~~~~i~~I~~~------G~---~~~~~~~l~~~~~~~~g~~~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~-~~v 224 (335)
T 2qdf_A 155 EGVSAEIQQINIV------GN---HAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYAR-FNI 224 (335)
T ss_dssp CCCBCEEEEEEEE------SC---CSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTT-CEE
T ss_pred cCCEEEEEEEEEE------CC---ccCCHHHHHHHhccCCCccccccccCCeeCHHHHHHHHHHHHHHHHHCCCeE-EEE
Confidence 98 59999999 98 47889999998888887 9999999998877664 579975 333
Q ss_pred e---eccCCCCCeEEEEEEEEEcCCceE
Q 005225 352 I---PQPAGDTGKVDLIMNVVERPSGGF 376 (707)
Q Consensus 352 ~---~~~~~~~~~vdl~i~V~E~~~~~~ 376 (707)
. ...+.+++.++|++.|.|+++..+
T Consensus 225 ~~~~~~~~~~~~~v~v~i~v~eG~~~~i 252 (335)
T 2qdf_A 225 DSTQVSLTPDKKGIYVTVNITEGDQYKL 252 (335)
T ss_dssp EEEEEEECTTSSEEEEEEEEECCCCCEE
T ss_pred cCCEEEEcCCCCEEEEEEEEccCCcEEE
Confidence 2 223234678999999999987543
No 8
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=99.80 E-value=6.7e-19 Score=171.98 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=129.7
Q ss_pred EEeeCCceE--EEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCc-eeEeeeE-EEe-eCc--EEE
Q 005225 211 QVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV-EIL-SGG--IIR 283 (707)
Q Consensus 211 ~V~EG~~~~--~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY-~a~V~~~-~~~-~~~--~v~ 283 (707)
...||++|+ +|.|+|+..++.++|.+.+.+++|++|+...+++++++|.++|+++|| +++|... ... .++ .|+
T Consensus 28 ~~~~~~~y~i~~I~i~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~~~~v~l~ 107 (189)
T 3q6b_A 28 GGQQMGRYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLR 107 (189)
T ss_dssp -------CEEEEEEEEEECTTCHHHHHHHTCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEEEEEEEECCCcCCHHHHHHhhCCCCCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEecCCCCEEEEE
Confidence 346888866 899999999999999999999999999999999999999999999999 5888864 222 334 478
Q ss_pred EEEeee---EEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCccceeeeccC-CCC
Q 005225 284 LQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GDT 359 (707)
Q Consensus 284 i~I~eg---~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~-~~~ 359 (707)
+.|+|| +|++|.|. |+ .++++.+|++.+.+++|++|+.+++++++++|.++|||+.|++.+.+. ..+
T Consensus 108 ~~V~eG~~~~i~~I~i~------Gn---~~~~~~~i~r~l~~~~G~~~n~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~ 178 (189)
T 3q6b_A 108 VNVDAGNRFYVRKIRFE------GN---DTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSP 178 (189)
T ss_dssp EEEECCCCCEEEEEEEE------SC---SSSCHHHHHTTCCSCTTSBCCHHHHHHHHHHHHHHSCCSEEEEEEEEETTEE
T ss_pred EEECCCCeEEEEEEEEE------CC---ccCCHHHHHhhccCCCCCccCHHHHHHHHHHHHhCCCceeeEEEeccCCCCC
Confidence 899999 79999999 98 489999999999999999999999999999999999999999998775 357
Q ss_pred CeEEEEEEEEE
Q 005225 360 GKVDLIMNVVE 370 (707)
Q Consensus 360 ~~vdl~i~V~E 370 (707)
+.++|.|.|+|
T Consensus 179 ~~vdv~v~V~E 189 (189)
T 3q6b_A 179 DQVDVVYKVKE 189 (189)
T ss_dssp EEEEEEEEEEC
T ss_pred CEEEEEEEEEC
Confidence 89999999987
No 9
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=99.51 E-value=4.7e-13 Score=130.42 Aligned_cols=132 Identities=16% Similarity=0.180 Sum_probs=107.7
Q ss_pred cccccCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHH----HcCCCceeeeeEE--e-C
Q 005225 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV--D-T 202 (707)
Q Consensus 130 ~~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~----~~GYf~a~v~~~v--~-~ 202 (707)
..+.+++.+|.+|.|+| |..+++++|++. + .+++|++|+...++++.++|. ++||+.+.|...+ + .
T Consensus 28 ~~~~~~~y~i~~I~i~G--~~~~~~~~L~~~----~-~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~ 100 (189)
T 3q6b_A 28 GGQQMGRYKLSGVEVSG--NLAGHSAEIEQL----T-KIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDA 100 (189)
T ss_dssp -------CEEEEEEEEE--ECTTCHHHHHHH----T-CCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETT
T ss_pred CCCCCCCEEEEEEEEEC--CCcCCHHHHHHh----h-CCCCCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEecCC
Confidence 44678899999999999 888888777753 3 689999999999999999884 7999999998643 3 3
Q ss_pred CCcEEEEEEEeeCCceE--EEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCceeEee
Q 005225 203 RDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVS 272 (707)
Q Consensus 203 ~~~v~l~~~V~EG~~~~--~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY~a~V~ 272 (707)
++.+.|+|.|.||++++ +|.|.|+..+.++.|++.+.+++|++|+..++++.+++|. +.|||..|.
T Consensus 101 ~~~v~l~~~V~eG~~~~i~~I~i~Gn~~~~~~~i~r~l~~~~G~~~n~~~l~~~~~~L~----~lg~F~~V~ 168 (189)
T 3q6b_A 101 DKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLN----RLGFFETVD 168 (189)
T ss_dssp TTEEEEEEEEECCCCCEEEEEEEESCSSSCHHHHHTTCCSCTTSBCCHHHHHHHHHHHH----HHSCCSEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEEEECCccCCHHHHHhhccCCCCCccCHHHHHHHHHHHH----hCCCceeeE
Confidence 55689999999999865 9999999999999999999999999999999999888875 479975444
No 10
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=99.29 E-value=4e-11 Score=120.69 Aligned_cols=148 Identities=20% Similarity=0.206 Sum_probs=117.7
Q ss_pred cccccCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHH----HcCCCceeeeeEEe-CCC
Q 005225 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAVD-TRD 204 (707)
Q Consensus 130 ~~~~~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~----~~GYf~a~v~~~v~-~~~ 204 (707)
++.+.|.|.|.+|.|+| |..++++.|++.+ .+++|++|+...++++.++|. ++||+.+.+..... ..+
T Consensus 70 ~~~v~eg~~i~~i~~~G--~~~~~~~~l~~~~-----~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~ 142 (235)
T 2x8x_X 70 TFVVRPYPVLRAVQVAG--NQVLTQEKVNEIF-----APQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPD 142 (235)
T ss_dssp EEEEEECCBCCEEEEES--CSSSCHHHHHHHH-----GGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTT
T ss_pred EEEEEecceEEEEEEEC--CccCCHHHHHHHh-----CccCCCCcCHHHHHHHHHHHHHHHHhCCCeeEEEEeecccCCC
Confidence 66777777999999999 8888888887643 688999999999999999884 89999999986542 233
Q ss_pred cEEEEEEEeeCC--ceE--EEEEecCc---CCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCceeEeeeEEEe
Q 005225 205 GIRLVFQVEPNQ--EFH--GLVCEGAN---VLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEIL 277 (707)
Q Consensus 205 ~v~l~~~V~EG~--~~~--~I~~~G~~---~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY~a~V~~~~~~ 277 (707)
+ .|+|.|.||+ +|+ .|.|.|+. .+.+..|++.+.+++|++|+..++++.+++|. +.|||..|......
T Consensus 143 ~-~l~~~v~eG~~~~i~i~~i~~~G~~~~~~~~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~----~~g~f~~v~i~~~~ 217 (235)
T 2x8x_X 143 G-VVTLQVAEGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLF----ELGLFEDVQVALEP 217 (235)
T ss_dssp S-EEEEEEECCBEEEEEEEEBCTTSCBCCCCSCHHHHHTTCSCCTTSBCCHHHHHHHHHHHH----HHTCEEEEEEEEEE
T ss_pred c-EEEEEEEeCceEEEEEEEecccCCcCCCccchhheeeeeecCCCCccCHHHHHHHHHHHH----hcCCcccceEEecc
Confidence 4 8999999999 444 67888987 77778888899999999999999999988887 67998544432222
Q ss_pred --eCc--EEEEEEeee
Q 005225 278 --SGG--IIRLQVAEA 289 (707)
Q Consensus 278 --~~~--~v~i~I~eg 289 (707)
.++ .|.+.|.|+
T Consensus 218 ~~~~~~~~l~i~v~e~ 233 (235)
T 2x8x_X 218 GQNPRRVNLILNIKER 233 (235)
T ss_dssp CSSTTSEEEEEEEEEC
T ss_pred CCCCCeeEEEEEEEeC
Confidence 223 477777775
No 11
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=99.23 E-value=6.8e-10 Score=126.38 Aligned_cols=260 Identities=18% Similarity=0.135 Sum_probs=168.8
Q ss_pred cCcceEEEEEEEeCCCCccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHH----HcCCCceeeeeEE-eCCCcEEE
Q 005225 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV-DTRDGIRL 208 (707)
Q Consensus 134 ~e~~~I~~I~~~G~~N~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~----~~GYf~a~v~~~v-~~~~~v~l 208 (707)
+++.+|++|.|+| |..+++++|++.+ ..+.|++|+.+.+++++++|. ++||..+.|.+.. +-.++ .|
T Consensus 56 g~~~~i~~I~~~G--~~~~~~~~l~~~~-----~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g-~l 127 (554)
T 2qdz_A 56 GHTVTVHAVDLDF--GVEGRLFDPAPLV-----QDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDG-VL 127 (554)
T ss_dssp CCSSSSCCEEEEC--CSSSCCCSCSTTS-----TTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETT-EE
T ss_pred CceEEEEEEEEEC--CccCCHHHHHHHh-----HhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccccCC-EE
Confidence 8899999999999 8888998887633 467899999999999999994 8999998886532 21233 59
Q ss_pred EEEEeeCCceEEEEEecCcCCChhHHHH---HhcCCCCcccCHHHHHHHHHHHHHHHHhCCceeEeeeEEEe--eCc--E
Q 005225 209 VFQVEPNQEFHGLVCEGANVLPTKFVED---AFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEIL--SGG--I 281 (707)
Q Consensus 209 ~~~V~EG~~~~~I~~~G~~~~~~~~L~~---~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY~a~V~~~~~~--~~~--~ 281 (707)
+|.|.||+ +..|.++|+...++..|+. .+.+++|++|+..+|++.+++|.+. + ..|...... .++ .
T Consensus 128 ~i~v~eG~-i~~I~i~G~~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~----~--~~v~~~~~p~~~~g~~~ 200 (554)
T 2qdz_A 128 KLKVEWGR-IKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNG----G--KTGNITIVPADEYGYSY 200 (554)
T ss_dssp EEEEECCE-EEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSS----S--EEEEEEEEECSSTTEEE
T ss_pred EEEEEeEE-EEEEEECCCCccchhhhhhhhhhccccCCCcCCHHHHHHHHHHHhcC----c--hhceEEEecCCCCCeeE
Confidence 99999996 7899999998888888988 8999999999999999998888753 4 344432222 233 3
Q ss_pred EEEEEeeeEEEEEEEEeccccCC--CCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCccceeeec-cCCC
Q 005225 282 IRLQVAEAEVNNISIRFLDRKTG--EPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQ-PAGD 358 (707)
Q Consensus 282 v~i~I~eg~i~~I~i~~~~~~~G--n~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~-~~~~ 358 (707)
|.|.|.|++--.+.+.+.. .| .. .+ |. +--.+.+... +-..
T Consensus 201 l~v~v~e~~~~~~~~g~~~--~g~g~~---~t-------------g~------------------~~~~~~~~~~n~~g~ 244 (554)
T 2qdz_A 201 LDLQLQRRALPRVSLGMDN--SGPGTP---EN-------------GR------------------YKYNASVTANDLLGL 244 (554)
T ss_dssp EEEEEEECCSCEEEEEEEE--CSCSSS---CS-------------SC------------------EEEEEEEEEECSSSS
T ss_pred EEEEEeeCCcEEEEEEEcC--CCCCCC---Cc-------------cc------------------eEEEEEEEeCCCCCC
Confidence 7788888632234443210 02 20 11 00 0001122221 1134
Q ss_pred CCeEEEEEEEEE----cCCceEEEeeeeecCccCCCccceEEEEEEEecC--CCCCCeEEEEEEEEceeeEEEEEEEeec
Q 005225 359 TGKVDLIMNVVE----RPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRN--VFGRNQKLNISLERGQIDSIFRINYTDP 432 (707)
Q Consensus 359 ~~~vdl~i~V~E----~~~~~~~~g~gyss~~~~g~~~g~~~~~~~~~~N--lfG~G~~l~l~~~~g~~~~~~~l~y~~P 432 (707)
.+.+.+.+.+.+ +......++++|+.-. + ..++.+.+.+...| +.+.+..+ .+......+.+.+..|
T Consensus 245 gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~--~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~~~~~~~~ 317 (554)
T 2qdz_A 245 NDTLGLYIGNRYYRDAGHDAERNYDLMYSVPL--G-RTRLDLQTGYSTYRNLLKTRYGQY----QSAGNSRSFGLKATRL 317 (554)
T ss_dssp SCEEEEEEEEECCSCCSSCEEEEEEEEEEEEE--T-TEEEEEEEEEEEEECCCSSSSCCC----CCEEEEEEEEEEEEEE
T ss_pred CcEEEEEEEecCccccCCCCceEEEEEEEEEE--e-cCeEEEEEEEeEEEEEccCCcceE----EEEeeEEEEEEEEEEE
Confidence 567788888776 3345566777776531 1 13455555555544 54444222 2333445688888899
Q ss_pred cccCCCCceEEEEEEEeee
Q 005225 433 WIEGDDKRTSRTIMVQNSR 451 (707)
Q Consensus 433 ~~~~~~~~~s~~~~~~~~~ 451 (707)
+.......+++++.+.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~ 336 (554)
T 2qdz_A 318 LYRDTRSQFSVYGGLKLRQ 336 (554)
T ss_dssp EECCSSEEEEEEEEEEEEE
T ss_pred EEECCCeEEEEEEEEEEEE
Confidence 8765444456666655544
No 12
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.14 E-value=3.8e-10 Score=118.74 Aligned_cols=153 Identities=15% Similarity=0.189 Sum_probs=113.4
Q ss_pred EEEeeCCceE--EEEEecC----cCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHhCCceeEeeeEEEee-Cc-E
Q 005225 210 FQVEPNQEFH--GLVCEGA----NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILS-GG-I 281 (707)
Q Consensus 210 ~~V~EG~~~~--~I~~~G~----~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~~GY~a~V~~~~~~~-~~-~ 281 (707)
=..+||++++ +|.|+|+ ..++++.|.+.+.+++|+.|+.+++.+++++|. +.|||+.|....... ++ .
T Consensus 54 ~~~~Eg~~~~I~~I~i~Gn~~~~~~~~~~~l~~~l~~k~G~~~~~~~l~~di~~L~----~~GyF~~V~v~~~~~~~~v~ 129 (316)
T 3mc9_A 54 TPETTEPRVLVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQEDINAIF----GTGFFSNVQASPEDTPLGVR 129 (316)
T ss_dssp ----CCCCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCTTSEECHHHHHHHHHHHH----HTSCEEEEEEEEEEETTEEE
T ss_pred CCCCCCCceEEEEEEEECCcccccccCHHHHHhhccCCCCCccCHHHHHHHHHHHH----HCCCceEEEEEEecCCCeEE
Confidence 3468899966 9999999 788889999999999999999999999887765 479987665433222 33 4
Q ss_pred EEEEEeee-EEEEEEEEeccccCCC------CCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHH----hCCC-Cccc
Q 005225 282 IRLQVAEA-EVNNISIRFLDRKTGE------PTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL----TMGI-MEDV 349 (707)
Q Consensus 282 v~i~I~eg-~i~~I~i~~~~~~~Gn------~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~----~~G~-F~~V 349 (707)
|+|.|.|| +|++|.|. |+ . ...++.|++.+.+++|++|+...++++.++|. +.|| |..|
T Consensus 130 l~~~V~egp~I~~I~~~------Gn~~~~~~~---~~~~~~L~~~l~l~~G~~~n~~~l~~~~~~I~~~y~~~GY~~A~V 200 (316)
T 3mc9_A 130 VSFIVQPNPVLSKVEIQ------ANPGTNVPS---VLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANV 200 (316)
T ss_dssp EEEEEEECCBCCEEEEE------CCC----CC---SSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred EEEEEecCceEEEEEEe------ccccccccc---cCCHHHHHHHhcccCCCeeCHHHHHHHHHHHHHHHHHCCCeeEEe
Confidence 88999998 89999999 87 4 56778899999999999999999998777764 5799 4445
Q ss_pred eeeeccCCCCCeEEEEEEEEEcCCceEEE
Q 005225 350 SIIPQPAGDTGKVDLIMNVVERPSGGFSA 378 (707)
Q Consensus 350 ~i~~~~~~~~~~vdl~i~V~E~~~~~~~~ 378 (707)
.+.+... .++. |.|.|.|++-..+.+
T Consensus 201 ~~~~~~~-~~g~--l~i~V~eG~i~~i~v 226 (316)
T 3mc9_A 201 VGAPQVS-ENGV--VTLQVAEGVVENISV 226 (316)
T ss_dssp CSSCEEC-TTSE--EEEEEECCEEC----
T ss_pred eeccEEC-CCCE--EEEEEEcCccccEEE
Confidence 5433332 2343 889999984333443
No 13
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=64.98 E-value=16 Score=35.05 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=52.5
Q ss_pred EEEEEEEeccccCCCCCCCCCCHHHHHhhc-ccCCCCccchhhHHHHHHHHH-hCCCCccceeeeccCCCCCeEEEEEEE
Q 005225 291 VNNISIRFLDRKTGEPTKGKTRPETILRQL-TTKKGQVYSMLQGKRDVETVL-TMGIMEDVSIIPQPAGDTGKVDLIMNV 368 (707)
Q Consensus 291 i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l-~l~~G~~~~~~~l~~~~~~L~-~~G~F~~V~i~~~~~~~~~~vdl~i~V 368 (707)
|.+|.|. |+. ..+..+.|+..+ .+..|..+=.-++.+..++|. .+.+..+|.|.-.. ++ .|.|.|
T Consensus 1 v~~V~V~------G~~--~~~s~~~I~~~~~~~~~~~~~~~vd~~~i~~~l~~~~P~V~~a~V~r~~---P~--~l~I~V 67 (220)
T 2vh1_A 1 MSKLVLT------GER--HYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQW---PD--ELKIHL 67 (220)
T ss_dssp -CEEEEE------SCC--SSCCHHHHHHHHHTTSCTTCGGGSCHHHHHHHHHHHCTTEEEEEEEEET---TT--EEEEEE
T ss_pred CcEEEEe------CCC--ccCCHHHHHHHHhhccCCCCeEEECHHHHHHHHHhcCCCEEEEEEEEeC---CC--ceEEEE
Confidence 4678888 983 148888888887 677656554557788888999 99999999987543 45 468889
Q ss_pred EEcCC
Q 005225 369 VERPS 373 (707)
Q Consensus 369 ~E~~~ 373 (707)
+|+.+
T Consensus 68 ~Er~p 72 (220)
T 2vh1_A 68 VEYVP 72 (220)
T ss_dssp EECCE
T ss_pred EEecc
Confidence 99876
No 14
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=54.74 E-value=18 Score=35.66 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=53.4
Q ss_pred EEEEEEEEeccccCCCCCCCCCCHHHHHhhc-ccCCCCccchhhHHHHHHHHHhCCCCccceeeeccCCCCCeEEEEEEE
Q 005225 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQL-TTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNV 368 (707)
Q Consensus 290 ~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l-~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~i~~~~~~~~~~vdl~i~V 368 (707)
.|.+|.|. |+. ..+..+.|+..+ .+..|..+=.-++++..++|.+..++.+|.|.-.. ++ .|.|.|
T Consensus 27 ~v~~I~V~------G~~--~~vs~~eI~~~~~~~~~g~~~~~vd~~~i~~~l~~~PwV~~a~V~r~~---P~--~L~I~V 93 (255)
T 2vh2_A 27 PLSKLVVT------GER--HYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRKQW---PD--ELKIHL 93 (255)
T ss_dssp CCCEEEEE------SCC--SSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEEET---TT--EEEEEE
T ss_pred eEeEEEEE------CCC--cccCHHHHHHHHhcccCCCccEEEcHHHHHHHHHcCCCeeEEEEEEEC---CC--eEEEEE
Confidence 67889999 983 147888888887 67765655445677788889899999999887643 45 468889
Q ss_pred EEcCC
Q 005225 369 VERPS 373 (707)
Q Consensus 369 ~E~~~ 373 (707)
+|+.+
T Consensus 94 ~Er~P 98 (255)
T 2vh2_A 94 VEYVP 98 (255)
T ss_dssp EECCC
T ss_pred EEeee
Confidence 99876
No 15
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=39.78 E-value=64 Score=30.68 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=43.6
Q ss_pred EEEEEEEeCCCC-ccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHH-HcCCCceeeeeEEeCCCcEEEEEEEeeCC
Q 005225 139 ISEVLVRNKDGE-ELERKDLETEALTALKACRANSALTVREVQEDVHRII-DSGYFCSCMPVAVDTRDGIRLVFQVEPNQ 216 (707)
Q Consensus 139 I~~I~~~G~~N~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~-~~GYf~a~v~~~v~~~~~v~l~~~V~EG~ 216 (707)
|++|.|+| |. .++.+++.+.+. .+..|..+-.-.+++..++|. +.-+-... .+...-++ .|.+.|.|..
T Consensus 1 v~~V~V~G--~~~~~s~~~I~~~~~----~~~~~~~~~~vd~~~i~~~l~~~~P~V~~a-~V~r~~P~--~l~I~V~Er~ 71 (220)
T 2vh1_A 1 MSKLVLTG--ERHYTRNDDIRQSIL----ALGEPGTFMTQDVNIIQTQIEQRLPWIKQV-SVRKQWPD--ELKIHLVEYV 71 (220)
T ss_dssp -CEEEEES--CCSSCCHHHHHHHHH----TTSCTTCGGGSCHHHHHHHHHHHCTTEEEE-EEEEETTT--EEEEEEEECC
T ss_pred CcEEEEeC--CCccCCHHHHHHHHh----hccCCCCeEEECHHHHHHHHHhcCCCEEEE-EEEEeCCC--ceEEEEEEec
Confidence 57899999 87 689999987542 344444433334444445666 66664322 22222233 5899999998
Q ss_pred ceE
Q 005225 217 EFH 219 (707)
Q Consensus 217 ~~~ 219 (707)
++-
T Consensus 72 pvA 74 (220)
T 2vh1_A 72 PIA 74 (220)
T ss_dssp EEE
T ss_pred cEE
Confidence 864
No 16
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=32.40 E-value=1.1e+02 Score=31.04 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=44.3
Q ss_pred eEEEEeEEEEEecCCceeEEEEEEecccCCCCCC-CCCCCCCCCCCCCCceeeEEEEEEE-cCcccEEEEEEEeCC----
Q 005225 621 SYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPS-VPGDPAGARLKPGSGYGYGFGIRVD-SPLGPLRLEYAFNDK---- 694 (707)
Q Consensus 621 ~~~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~~-~~~~~~~~~~~~~~~~s~G~GlR~~-tp~Gpirld~a~~~~---- 694 (707)
..+.+.+-++|++...|.+.+.+-+|.......+ ..+.. ....+.+.+|+|+.|. ++-.-++++|-+-..
T Consensus 96 ~~~~l~~~~~y~~~~~~~~Y~~~G~~~~~~~~~~~~~~~~----~~~~~~~~~G~Gv~y~lt~~~~l~~ey~y~~~~~~~ 171 (346)
T 3nb3_A 96 QGVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKN----HDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDA 171 (346)
T ss_dssp EEEEEEEEEEEESSSSEEEEEEEEEEEEEEEEECSSSCEE----EEEEEEEEEEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred EeeEEEEEEeeecCCcEeEeeeeeeeEEeeeeeecCcCcc----cCCccceeEEeEEEEEeCCCeeEEEEEEEEeccCcc
Confidence 3456777888888776655444433332211000 00000 0113567888999988 566678888876421
Q ss_pred -------CCcEEEEEeeec
Q 005225 695 -------QAKRFHFGVGYR 706 (707)
Q Consensus 695 -------~~~~f~FsiG~~ 706 (707)
....+.++++|+
T Consensus 172 ~~~~~~~~~~~~~lGl~Y~ 190 (346)
T 3nb3_A 172 HTIGTRPDNGMLSLGVSYR 190 (346)
T ss_dssp ---------CEEEEEEEEE
T ss_pred ccccccCcccEEEEEEEEE
Confidence 234667777664
No 17
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=27.77 E-value=62 Score=31.74 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=43.5
Q ss_pred CcceEEEEEEEeCCCC-ccChhhHHHHHHHHhhhcCCCCccCHHHHHHHHHHHHHcCCCceeeeeEEeCCCcEEEEEEEe
Q 005225 135 ERVLISEVLVRNKDGE-ELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVE 213 (707)
Q Consensus 135 e~~~I~~I~~~G~~N~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~d~~~l~~~GYf~a~v~~~v~~~~~v~l~~~V~ 213 (707)
+...|++|.|+| |. .++.+++++.+ ..+..|..+-.-.+++..++|.+.-+-... .+...-++ .|.+.|.
T Consensus 24 p~f~v~~I~V~G--~~~~vs~~eI~~~~----~~~~~g~~~~~vd~~~i~~~l~~~PwV~~a-~V~r~~P~--~L~I~V~ 94 (255)
T 2vh2_A 24 SRLPLSKLVVTG--ERHYTTNDDIRQAI----LSLGAPGTFMTQDVNIIQQQIERLPWIQQA-SVRKQWPD--ELKIHLV 94 (255)
T ss_dssp ---CCCEEEEES--CCSSCCHHHHHHHH----TTSCCSSTTTSCHHHHHHHHTSCCSSEEEE-EEEEETTT--EEEEEEE
T ss_pred CCceEeEEEEEC--CCcccCHHHHHHHH----hcccCCCccEEEcHHHHHHHHHcCCCeeEE-EEEEECCC--eEEEEEE
Confidence 446789999999 77 48888888644 135454444334444444555555553321 12222233 6899999
Q ss_pred eCCce
Q 005225 214 PNQEF 218 (707)
Q Consensus 214 EG~~~ 218 (707)
|..++
T Consensus 95 Er~Pv 99 (255)
T 2vh2_A 95 EYVPF 99 (255)
T ss_dssp ECCCC
T ss_pred EeeeE
Confidence 98885
Done!