Query 005225
Match_columns 707
No_of_seqs 340 out of 2261
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 19:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005225.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005225hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x2ga1 d.224.1.3 (A:247-337) 50.0 9.7 0.00071 29.3 4.8 57 202-260 14-70 (91)
2 d1x2ga1 d.224.1.3 (A:247-337) 46.7 9.7 0.00071 29.3 4.3 51 282-342 20-70 (91)
3 d1vqza1 d.224.1.3 (A:242-329) 46.6 3.1 0.00023 32.1 1.2 59 282-350 20-78 (88)
4 d1t16a_ f.4.3.4 (A:) Long-chai 36.9 1.7E+02 0.012 27.5 17.6 54 441-497 339-392 (427)
5 d1qjpa_ f.4.1.1 (A:) Outer mem 35.6 54 0.0039 27.1 8.2 83 621-706 75-169 (171)
6 d1qj8a_ f.4.1.1 (A:) Outer mem 32.1 28 0.0021 28.7 5.4 83 621-706 61-147 (148)
7 d1vqza1 d.224.1.3 (A:242-329) 31.1 11 0.00082 28.7 2.3 55 202-258 14-68 (88)
8 d1p4ta_ f.4.1.1 (A:) Outer mem 21.1 57 0.0041 26.7 5.3 67 623-692 64-131 (155)
9 d1p4ta_ f.4.1.1 (A:) Outer mem 18.3 2.2E+02 0.016 22.6 10.5 27 471-497 107-133 (155)
10 d1t6sa1 a.4.5.60 (A:1-85) Segr 14.9 94 0.0069 22.8 4.7 43 226-272 20-65 (85)
No 1
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=50.04 E-value=9.7 Score=29.28 Aligned_cols=57 Identities=16% Similarity=0.094 Sum_probs=41.8
Q ss_pred CCCcEEEEEEEeeCCceEEEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHH
Q 005225 202 TRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSING 260 (707)
Q Consensus 202 ~~~~v~l~~~V~EG~~~~~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~ 260 (707)
+-+.|.+.++|+.|. |+++.|.|.-. ....+.+.-..-.|.+|+.+.+.+.++.+..
T Consensus 14 ~~G~ve~~l~V~~G~-I~~~~i~gDfl-~~~~i~~le~~L~G~~y~~~~i~~~l~~~~~ 70 (91)
T d1x2ga1 14 TWGGVELHFDVEKGH-ITRAQVFTDSL-NPAPLEALAGRLQGCLYRADMLQQECEALLV 70 (91)
T ss_dssp TTEEEEEEEEEETTE-EEEEEEEECCS-CCHHHHHHHHHHTTCBSSHHHHHHHHHHTGG
T ss_pred CCceEEEEEEEeCCE-EEEEEEEcCCC-CcHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Confidence 356799999999986 88999998643 3344544434346889999999998877653
No 2
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=46.72 E-value=9.7 Score=29.28 Aligned_cols=51 Identities=12% Similarity=0.245 Sum_probs=37.8
Q ss_pred EEEEEeeeEEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHh
Q 005225 282 IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342 (707)
Q Consensus 282 v~i~I~eg~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~ 342 (707)
+.++|..|.|.++.|. |. -.....|...-..-.|.+|+.+.+.+....+..
T Consensus 20 ~~l~V~~G~I~~~~i~------gD----fl~~~~i~~le~~L~G~~y~~~~i~~~l~~~~~ 70 (91)
T d1x2ga1 20 LHFDVEKGHITRAQVF------TD----SLNPAPLEALAGRLQGCLYRADMLQQECEALLV 70 (91)
T ss_dssp EEEEEETTEEEEEEEE------EC----CSCCHHHHHHHHHHTTCBSSHHHHHHHHHHTGG
T ss_pred EEEEEeCCEEEEEEEE------cC----CCCcHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Confidence 6788889999999998 75 445555554444345999999999888776643
No 3
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=46.58 E-value=3.1 Score=32.08 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=39.9
Q ss_pred EEEEEeeeEEEEEEEEeccccCCCCCCCCCCHHHHHhhcccCCCCccchhhHHHHHHHHHhCCCCccce
Q 005225 282 IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVS 350 (707)
Q Consensus 282 v~i~I~eg~i~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~~G~F~~V~ 350 (707)
+.++|..|.|.+|.|. |. -.....|...-..-.|..|+.+.|.+....+.-..||..+.
T Consensus 20 v~l~V~~G~I~~iki~------GD----ff~~~~i~~le~~L~G~~y~~~~i~~~L~~~~~~~Yf~~i~ 78 (88)
T d1vqza1 20 VFANVTESKIQDIKIY------GD----FFGIEDVAAVEDVLRGVKYEREDVLKALKTIDITRYFAGIS 78 (88)
T ss_dssp EEEEEETTEEEEEEEE------ES----CCCSSCTHHHHHHHTTCBSSHHHHHHHHTTSCGGGTSTTCC
T ss_pred EEEEEeCCEEEEEEEE------ec----CCCchhHHHHHHHHcCCCCCHHHHHHHHHhCCHHHHhCCCC
Confidence 6778889999999998 65 22222233333334589999999988877765556666543
No 4
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=36.88 E-value=1.7e+02 Score=27.47 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=32.1
Q ss_pred eEEEEEEEeeecCCccccCCCCCCCceEEEEEEEEEEEEeeCCCCeEEEEEEEEEEE
Q 005225 441 TSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (707)
Q Consensus 441 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~ 497 (707)
+.+++.+.+...... ............+..+++.+++++++++.+.+++.|...
T Consensus 339 l~lR~Gy~y~~~~~~---~~~~~~~~p~~~~~~~s~G~~~~~~~~~~id~a~~y~~~ 392 (427)
T d1t16a_ 339 WTFRTGIAFDDSPVP---AQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHG 392 (427)
T ss_dssp EEEEEEEEEECCSSC---TTTCCSSSCCCCEEEEEEEEEEESSSSEEEEEEEEEEEE
T ss_pred EEEEEEEEEccCCCC---cccccccccCCCCEEEEEEEEEEcCCCeEEEEEEEEEEc
Confidence 566666666543211 001111112234566778888999999999988887654
No 5
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=35.58 E-value=54 Score=27.10 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred eEEEEeEEEEEecCCceeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEEEEEE-cCcccEEEEEEEeCC-----
Q 005225 621 SYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVD-SPLGPLRLEYAFNDK----- 694 (707)
Q Consensus 621 ~~~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~GlR~~-tp~Gpirld~a~~~~----- 694 (707)
..+.+.+.+.|++...+.+.+.+-+|..............+-. .+...+|+|+.|. +|---+|++|-+-..
T Consensus 75 ~~~~l~~~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~---~~~~~~G~G~~y~i~~~~~l~~ey~~~~~~~~~~ 151 (171)
T d1qjpa_ 75 QGVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDT---GVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAH 151 (171)
T ss_dssp EEEEEEEEEEEESSSSEEEEEEEEEEEEEEEEECSSSCEEEEE---EEEEEEEEEEEEEEETTEEEEEEEEEEC------
T ss_pred EEEEEEEEEEEecCCceeEEEEeeeEEEEEEeecccccccccC---ccceEEEeEEEEEeCCCEEEEEEEEEEeccCccc
Q ss_pred ------CCcEEEEEeeec
Q 005225 695 ------QAKRFHFGVGYR 706 (707)
Q Consensus 695 ------~~~~f~FsiG~~ 706 (707)
+...+.+++.++
T Consensus 152 ~~~~~~~~~~~~~G~~Y~ 169 (171)
T d1qjpa_ 152 TIGTRPDNGMLSLGVSYR 169 (171)
T ss_dssp --------CEEEEEEEEE
T ss_pred cccccccccEEEEEEEEE
No 6
>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]}
Probab=32.05 E-value=28 Score=28.70 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=45.1
Q ss_pred eEEEEeEEEEEecCCceeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEEEEEE-cCcccEEEEEEEeCC---CC
Q 005225 621 SYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVD-SPLGPLRLEYAFNDK---QA 696 (707)
Q Consensus 621 ~~~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~GlR~~-tp~Gpirld~a~~~~---~~ 696 (707)
..+.+.+-+.+|+..++.+.+-+-++....+.........+ ...+.+.+|+|+.|. ++---+|++|-+... +.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~Y~~~G~a~~~~~~~~~~~~~~~---~~~~g~~~G~Gvey~l~~n~~~~~eY~~~~~~~~d~ 137 (148)
T d1qj8a_ 61 QYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKND---TSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV 137 (148)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEETTTEEEE---EEEEEEEEEEEEEECSSTTEEEEEEEEEEEETTEEE
T ss_pred eEEEEEEEEEEEcCCceeEEEEeEEEEEEEEeccCCCcccc---ccccceeEeeeEEEEecCCEEEEEEEEEEeCCCcee
Confidence 34556677778877665444333333222111000000000 013457899999998 566678888876532 34
Q ss_pred cEEEEEeeec
Q 005225 697 KRFHFGVGYR 706 (707)
Q Consensus 697 ~~f~FsiG~~ 706 (707)
..|.+++|+|
T Consensus 138 ~~~~~Gv~Yr 147 (148)
T d1qj8a_ 138 GTWIAGVGYR 147 (148)
T ss_dssp EEEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 6778888876
No 7
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=31.14 E-value=11 Score=28.68 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=38.4
Q ss_pred CCCcEEEEEEEeeCCceEEEEEecCcCCChhHHHHHhcCCCCcccCHHHHHHHHHHH
Q 005225 202 TRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSI 258 (707)
Q Consensus 202 ~~~~v~l~~~V~EG~~~~~I~~~G~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I 258 (707)
+.+.+.+.++|+.|. |+++.+.|.- +....+.+.-..-.|.+|+.+.|.+.++.+
T Consensus 14 ~~G~vev~l~V~~G~-I~~iki~GDf-f~~~~i~~le~~L~G~~y~~~~i~~~L~~~ 68 (88)
T d1vqza1 14 TSGKVEVFANVTESK-IQDIKIYGDF-FGIEDVAAVEDVLRGVKYEREDVLKALKTI 68 (88)
T ss_dssp TTEEEEEEEEEETTE-EEEEEEEESC-CCSSCTHHHHHHHTTCBSSHHHHHHHHTTS
T ss_pred CCcEEEEEEEEeCCE-EEEEEEEecC-CCchhHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 346789999997774 8899999863 333333333333468899999998887665
No 8
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=21.05 E-value=57 Score=26.67 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=36.4
Q ss_pred EEEeEEEEEecCCceeEEEEEEecccCCCCCCCCCCCCCCCCCCCCceeeEEEEEEE-cCcccEEEEEEEe
Q 005225 623 VVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGDPAGARLKPGSGYGYGFGIRVD-SPLGPLRLEYAFN 692 (707)
Q Consensus 623 ~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~GlR~~-tp~Gpirld~a~~ 692 (707)
+.+++-+.+++..++.+.+..=+|........ .+... .-+..+.+.+|+|+.|. +|--.++++|-|.
T Consensus 64 ~~l~~~~~~~~~~~~~py~~~G~g~~~~~~~~-~~~~~--~~~~~~~~~~g~G~~y~lt~n~~~~~eyry~ 131 (155)
T d1p4ta_ 64 IGASAIYDFDTQSPVKPYLGARLSLNRASVDL-GGSDS--FSQTSIGLGVLTGVSYAVTPNVDLDAGYRYN 131 (155)
T ss_dssp EEEEEEEECCCSSSEEEEEEEEEEEEEEEEEE-TTEEE--ECCCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred eeEEEEEEecCCCceeEEEEEeeEEEEeeecc-ccccc--ccCcceeeEEEEEEEEEecCCEEEEEEEEEE
Confidence 44566666666666655544444433221110 00000 00113567889999998 7777888888764
No 9
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=18.28 E-value=2.2e+02 Score=22.59 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=21.6
Q ss_pred EEEEEEEEEeeCCCCeEEEEEEEEEEE
Q 005225 471 RVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (707)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~lg~~~~~~ 497 (707)
.+.+++.+.|.++++|.+.++++|...
T Consensus 107 ~~~~g~G~~y~lt~n~~~~~eyry~~~ 133 (155)
T d1p4ta_ 107 GLGVLTGVSYAVTPNVDLDAGYRYNYI 133 (155)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeEEEEEEEEEecCCEEEEEEEEEEEc
Confidence 556777888999999999988877544
No 10
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=14.92 E-value=94 Score=22.78 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=31.5
Q ss_pred CcCCChhHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHh--CCc-eeEee
Q 005225 226 ANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYME--RGL-FGMVS 272 (707)
Q Consensus 226 ~~~~~~~~L~~~~~~~~g~~~~~~~l~~~~~~I~~~y~~--~GY-~a~V~ 272 (707)
.+.++.++|.+.+. ..++...+.+.++.|...|.+ +|+ +.++.
T Consensus 20 ~~Pls~~~L~~~l~----~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~ 65 (85)
T d1t6sa1 20 EEPVNLQTLSQITA----HKFTPSELQEAVDELNRDYEATGRTFRIHAIA 65 (85)
T ss_dssp SSCBCHHHHHHHTT----CCCCHHHHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred CCCCCHHHHHHHHc----cCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 35567777777664 346788999999999999965 677 56554
Done!