Query 005228
Match_columns 707
No_of_seqs 135 out of 354
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 19:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x58_A Hypothetical protein 49 99.7 3.4E-18 1.2E-22 140.9 6.6 57 640-704 4-60 (62)
2 2aje_A Telomere repeat-binding 99.6 1.5E-16 5E-21 142.1 6.5 61 638-704 7-67 (105)
3 2roh_A RTBP1, telomere binding 99.6 2.8E-16 9.6E-21 143.6 6.6 60 637-702 24-83 (122)
4 2juh_A Telomere binding protei 99.6 1.6E-15 5.6E-20 138.4 7.1 60 637-702 10-69 (121)
5 2ckx_A NGTRF1, telomere bindin 99.5 3.8E-15 1.3E-19 127.9 4.0 53 645-703 1-53 (83)
6 3sjm_A Telomeric repeat-bindin 99.4 1.7E-13 5.8E-18 111.9 5.6 56 640-703 7-62 (64)
7 1w0t_A Telomeric repeat bindin 99.2 1E-11 3.5E-16 96.8 5.9 52 643-702 1-52 (53)
8 1ity_A TRF1; helix-turn-helix, 99.2 1.9E-11 6.5E-16 99.8 7.0 58 638-703 4-61 (69)
9 1guu_A C-MYB, MYB proto-oncoge 98.7 1.3E-08 4.4E-13 78.6 5.6 49 643-701 2-50 (52)
10 2d9a_A B-MYB, MYB-related prot 98.7 2.4E-08 8.2E-13 79.2 6.4 53 641-703 5-57 (60)
11 1gvd_A MYB proto-oncogene prot 98.6 3.9E-08 1.3E-12 76.0 5.9 49 643-701 2-50 (52)
12 1xwh_A Autoimmune regulator; P 98.5 4.2E-08 1.4E-12 80.0 3.0 50 332-383 7-56 (66)
13 1x41_A Transcriptional adaptor 98.5 1.7E-07 6E-12 74.8 6.3 53 642-704 6-58 (60)
14 2puy_A PHD finger protein 21A; 98.5 5.2E-08 1.8E-12 77.9 3.1 48 333-382 5-52 (60)
15 2dim_A Cell division cycle 5-l 98.5 1.6E-07 5.6E-12 76.6 6.1 53 641-703 6-58 (70)
16 2l5u_A Chromodomain-helicase-D 98.5 7.7E-08 2.6E-12 77.6 4.0 49 332-382 10-58 (61)
17 1fp0_A KAP-1 corepressor; PHD 98.5 1E-07 3.6E-12 83.1 4.9 60 323-384 13-74 (88)
18 2lri_C Autoimmune regulator; Z 98.4 9.4E-08 3.2E-12 78.8 3.7 48 332-381 11-58 (66)
19 2yql_A PHD finger protein 21A; 98.4 1.1E-07 3.7E-12 75.2 3.8 48 331-380 7-54 (56)
20 1mm2_A MI2-beta; PHD, zinc fin 98.4 1.2E-07 4E-12 76.5 3.6 50 332-383 8-57 (61)
21 2elk_A SPCC24B10.08C protein; 98.4 2.6E-07 8.9E-12 73.6 4.7 48 644-700 9-56 (58)
22 2ku3_A Bromodomain-containing 98.4 1.5E-07 5.1E-12 78.6 3.3 55 326-384 9-68 (71)
23 2yt5_A Metal-response element- 98.4 1.2E-07 4.3E-12 76.2 2.7 52 332-385 5-64 (66)
24 2cu7_A KIAA1915 protein; nucle 98.3 2.7E-07 9.1E-12 76.0 3.9 51 642-703 7-57 (72)
25 2yum_A ZZZ3 protein, zinc fing 98.3 4.4E-07 1.5E-11 74.8 4.4 56 643-703 7-62 (75)
26 2llk_A Cyclin-D-binding MYB-li 98.3 5.2E-07 1.8E-11 76.0 4.8 49 642-702 21-69 (73)
27 1gv2_A C-MYB, MYB proto-oncoge 98.3 7.6E-07 2.6E-11 76.9 5.8 50 643-703 55-104 (105)
28 3o36_A Transcription intermedi 98.3 3.4E-07 1.2E-11 86.2 3.7 48 333-382 4-51 (184)
29 2l43_A N-teminal domain from h 98.3 4.2E-07 1.4E-11 78.4 3.7 50 330-383 22-76 (88)
30 3u5n_A E3 ubiquitin-protein li 98.3 4E-07 1.4E-11 87.5 3.8 48 333-382 7-54 (207)
31 1gv2_A C-MYB, MYB proto-oncoge 98.2 1.7E-06 5.8E-11 74.7 5.9 49 643-701 3-51 (105)
32 3osg_A MYB21; transcription-DN 98.2 1.3E-06 4.4E-11 78.3 5.2 50 643-703 61-110 (126)
33 1wev_A Riken cDNA 1110020M19; 98.2 7.1E-07 2.4E-11 76.7 3.1 49 333-383 16-73 (88)
34 1h8a_C AMV V-MYB, MYB transfor 98.2 1.9E-06 6.3E-11 77.1 5.7 50 643-703 78-127 (128)
35 2ro1_A Transcription intermedi 98.1 9.1E-07 3.1E-11 84.7 3.4 48 333-382 2-49 (189)
36 2yus_A SWI/SNF-related matrix- 98.1 2.7E-06 9.1E-11 72.3 5.9 49 641-700 15-63 (79)
37 2k9n_A MYB24; R2R3 domain, DNA 98.1 1E-06 3.4E-11 76.9 2.7 50 643-703 52-101 (107)
38 2e6r_A Jumonji/ARID domain-con 98.1 1.5E-06 5.1E-11 75.4 3.6 52 327-380 10-64 (92)
39 2cqr_A RSGI RUH-043, DNAJ homo 98.1 4.4E-06 1.5E-10 70.4 5.9 54 642-702 16-69 (73)
40 1h8a_C AMV V-MYB, MYB transfor 98.1 3.4E-06 1.2E-10 75.4 5.4 50 643-702 26-75 (128)
41 3zqc_A MYB3; transcription-DNA 98.1 3.5E-06 1.2E-10 75.9 5.5 50 643-703 53-102 (131)
42 2din_A Cell division cycle 5-l 98.1 2.2E-06 7.7E-11 69.2 3.8 47 643-701 8-54 (66)
43 3osg_A MYB21; transcription-DN 98.1 4.5E-06 1.5E-10 74.9 6.0 51 640-701 7-57 (126)
44 2k9n_A MYB24; R2R3 domain, DNA 98.0 4.1E-06 1.4E-10 73.1 5.2 48 644-701 1-48 (107)
45 4gne_A Histone-lysine N-methyl 98.0 3.6E-06 1.2E-10 75.5 4.6 49 330-380 12-60 (107)
46 1f62_A Transcription factor WS 98.0 2.1E-06 7.3E-11 66.2 2.7 44 335-380 2-48 (51)
47 1h89_C C-MYB, MYB proto-oncoge 97.9 1.1E-05 3.6E-10 74.5 6.2 50 643-703 109-158 (159)
48 3zqc_A MYB3; transcription-DNA 97.9 1E-05 3.4E-10 72.9 5.8 48 644-701 2-49 (131)
49 2e6s_A E3 ubiquitin-protein li 97.9 7.4E-06 2.5E-10 69.4 3.8 44 335-380 28-75 (77)
50 3asl_A E3 ubiquitin-protein li 97.8 1E-05 3.5E-10 67.1 3.5 44 335-380 20-67 (70)
51 2lbm_A Transcriptional regulat 97.8 9.6E-06 3.3E-10 76.0 3.5 61 313-382 50-117 (142)
52 1wen_A Inhibitor of growth fam 97.8 1.9E-05 6.5E-10 65.9 4.9 55 326-383 9-66 (71)
53 1h89_C C-MYB, MYB proto-oncoge 97.8 2.9E-05 9.8E-10 71.6 6.6 50 643-702 57-106 (159)
54 2ltp_A Nuclear receptor corepr 96.9 4.8E-06 1.6E-10 71.6 0.0 50 643-703 15-64 (89)
55 3shb_A E3 ubiquitin-protein li 97.7 2.3E-05 7.9E-10 66.5 3.7 44 335-380 28-75 (77)
56 2kwj_A Zinc finger protein DPF 97.7 2.8E-05 9.6E-10 69.1 4.3 44 335-380 60-106 (114)
57 2ysm_A Myeloid/lymphoid or mix 97.6 2.5E-05 8.7E-10 68.4 3.5 47 332-380 6-55 (111)
58 3v43_A Histone acetyltransfera 97.6 3.1E-05 1E-09 68.6 3.7 44 335-380 63-110 (112)
59 2ysm_A Myeloid/lymphoid or mix 97.6 2.7E-05 9.2E-10 68.2 3.1 54 328-383 47-105 (111)
60 2k16_A Transcription initiatio 97.6 3.1E-05 1.1E-09 63.8 3.2 49 331-381 16-67 (75)
61 3ask_A E3 ubiquitin-protein li 97.6 2.7E-05 9.2E-10 77.8 3.1 45 334-380 175-223 (226)
62 2cjj_A Radialis; plant develop 97.5 6.1E-05 2.1E-09 66.1 4.5 51 644-701 8-58 (93)
63 2vnf_A ING 4, P29ING4, inhibit 97.5 3.4E-05 1.2E-09 62.2 2.6 51 329-382 6-59 (60)
64 3c6w_A P28ING5, inhibitor of g 97.5 4.3E-05 1.5E-09 61.6 2.5 51 329-382 5-58 (59)
65 2eqr_A N-COR1, N-COR, nuclear 97.4 0.00024 8.2E-09 57.1 6.1 52 640-702 8-59 (61)
66 2lv9_A Histone-lysine N-methyl 97.4 0.00024 8.3E-09 62.0 6.2 45 336-383 33-77 (98)
67 3ql9_A Transcriptional regulat 97.2 4.9E-05 1.7E-09 70.3 0.4 48 333-382 57-111 (129)
68 1ign_A Protein (RAP1); RAP1,ye 97.2 0.00028 9.5E-09 71.4 5.3 57 642-703 6-62 (246)
69 1weu_A Inhibitor of growth fam 97.1 0.00038 1.3E-08 61.0 4.3 52 329-383 32-86 (91)
70 3hm5_A DNA methyltransferase 1 97.1 0.00042 1.4E-08 61.2 4.6 51 645-701 31-81 (93)
71 2g6q_A Inhibitor of growth pro 97.1 0.00024 8.3E-09 57.8 2.7 51 329-382 7-60 (62)
72 2cqq_A RSGI RUH-037, DNAJ homo 97.1 0.00039 1.3E-08 58.4 3.9 52 643-702 7-58 (72)
73 2jmi_A Protein YNG1, ING1 homo 97.1 0.00032 1.1E-08 61.3 3.5 55 323-380 16-74 (90)
74 3v43_A Histone acetyltransfera 97.0 0.00014 4.9E-09 64.3 1.1 47 332-380 4-62 (112)
75 2kwj_A Zinc finger protein DPF 96.8 0.00026 8.8E-09 62.9 0.7 36 343-380 21-59 (114)
76 1wgx_A KIAA1903 protein; MYB D 96.4 0.0055 1.9E-07 52.0 6.1 53 645-704 9-61 (73)
77 4b4c_A Chromodomain-helicase-D 96.2 0.0089 3E-07 56.8 7.0 53 643-700 133-194 (211)
78 2ri7_A Nucleosome-remodeling f 96.1 0.0032 1.1E-07 58.4 3.6 49 332-383 7-60 (174)
79 1x4i_A Inhibitor of growth pro 96.1 0.0026 8.9E-08 52.9 2.6 46 332-380 5-53 (70)
80 2iw5_B Protein corest, REST co 95.9 0.0069 2.4E-07 61.1 5.0 52 641-703 130-181 (235)
81 1wew_A DNA-binding family prot 95.9 0.006 2.1E-07 51.0 3.9 51 332-383 15-73 (78)
82 1we9_A PHD finger family prote 95.8 0.0049 1.7E-07 49.3 3.1 51 332-384 5-60 (64)
83 4iej_A DNA methyltransferase 1 95.6 0.011 3.6E-07 52.5 4.6 51 645-701 31-81 (93)
84 2ebi_A DNA binding protein GT- 95.5 0.0037 1.3E-07 52.6 1.3 60 642-703 2-66 (86)
85 2xb1_A Pygopus homolog 2, B-ce 95.5 0.0055 1.9E-07 54.2 2.3 54 334-388 4-67 (105)
86 1ofc_X ISWI protein; nuclear p 95.0 0.011 3.6E-07 61.5 3.1 57 643-701 211-274 (304)
87 2yqk_A Arginine-glutamic acid 95.0 0.061 2.1E-06 43.6 6.8 53 641-703 6-58 (63)
88 2rsd_A E3 SUMO-protein ligase 94.7 0.021 7.3E-07 46.6 3.6 51 333-384 10-67 (68)
89 1wee_A PHD finger family prote 94.5 0.021 7.2E-07 46.9 3.1 47 333-382 16-66 (72)
90 2crg_A Metastasis associated p 94.1 0.099 3.4E-06 43.3 6.2 49 640-698 4-52 (70)
91 3o70_A PHD finger protein 13; 93.9 0.045 1.5E-06 45.2 3.8 47 331-381 17-66 (68)
92 1irz_A ARR10-B; helix-turn-hel 93.8 0.11 3.7E-06 43.3 5.9 57 640-702 3-62 (64)
93 2y9y_A Imitation switch protei 93.3 0.044 1.5E-06 58.4 3.4 58 643-702 227-291 (374)
94 3lqh_A Histone-lysine N-methyl 92.7 0.077 2.6E-06 51.3 3.9 75 334-411 3-93 (183)
95 1wep_A PHF8; structural genomi 92.6 0.06 2.1E-06 44.9 2.7 49 332-383 11-64 (79)
96 1fex_A TRF2-interacting telome 91.8 0.23 7.8E-06 40.1 5.1 54 644-701 2-58 (59)
97 4b4c_A Chromodomain-helicase-D 91.8 0.17 5.7E-06 48.1 5.0 53 641-699 4-56 (211)
98 2kgg_A Histone demethylase jar 91.6 0.056 1.9E-06 42.1 1.3 44 336-380 5-52 (52)
99 2xb0_X Chromo domain-containin 91.4 0.11 3.7E-06 53.1 3.4 29 645-678 169-197 (270)
100 2xag_B REST corepressor 1; ami 90.3 0.35 1.2E-05 53.1 6.3 51 641-702 377-427 (482)
101 1wem_A Death associated transc 89.4 0.13 4.3E-06 42.5 1.6 46 334-382 17-70 (76)
102 2vpb_A Hpygo1, pygopus homolog 89.4 0.097 3.3E-06 43.0 0.9 49 331-380 6-64 (65)
103 3o7a_A PHD finger protein 13 v 88.5 0.3 1E-05 37.9 3.0 39 339-380 9-50 (52)
104 4eef_G F-HB80.4, designed hema 87.0 0.3 1E-05 41.9 2.4 47 644-697 20-66 (74)
105 4a69_C Nuclear receptor corepr 86.6 0.9 3.1E-05 39.6 5.3 46 641-697 40-85 (94)
106 3kqi_A GRC5, PHD finger protei 86.5 0.22 7.4E-06 41.3 1.3 43 338-382 14-61 (75)
107 3pur_A Lysine-specific demethy 86.2 0.4 1.4E-05 53.2 3.5 34 345-380 58-92 (528)
108 3kv5_D JMJC domain-containing 82.5 0.31 1.1E-05 53.2 0.6 45 334-381 38-87 (488)
109 2xb0_X Chromo domain-containin 81.9 1.8 6.3E-05 44.2 6.0 52 643-700 2-53 (270)
110 4bbq_A Lysine-specific demethy 78.6 1.2 4E-05 38.9 2.9 34 345-380 75-112 (117)
111 1wil_A KIAA1045 protein; ring 76.8 0.5 1.7E-05 41.8 0.0 46 332-379 14-73 (89)
112 2lr8_A CAsp8-associated protei 76.5 0.64 2.2E-05 39.6 0.0 56 643-707 13-68 (70)
113 3kv4_A PHD finger protein 8; e 72.0 0.7 2.4E-05 50.1 -0.4 47 336-384 7-58 (447)
114 1ug2_A 2610100B20RIK gene prod 70.0 4.2 0.00014 36.4 4.2 54 641-702 30-83 (95)
115 1ign_A Protein (RAP1); RAP1,ye 68.6 5.8 0.0002 40.5 5.4 28 670-702 172-199 (246)
116 1x64_A Alpha-actinin-2 associa 67.3 3.1 0.00011 34.3 2.6 51 329-383 21-82 (89)
117 4gne_A Histone-lysine N-methyl 66.4 3.1 0.00011 37.3 2.6 40 334-376 59-98 (107)
118 2dj7_A Actin-binding LIM prote 63.8 4.1 0.00014 33.4 2.7 56 324-383 6-72 (80)
119 3a1b_A DNA (cytosine-5)-methyl 61.5 2.3 8E-05 40.8 1.0 75 299-380 49-132 (159)
120 2d8v_A Zinc finger FYVE domain 60.9 4.7 0.00016 34.2 2.6 31 331-381 6-36 (67)
121 1x62_A C-terminal LIM domain p 60.3 6 0.0002 31.9 3.1 49 330-382 12-71 (79)
122 1g47_A Pinch protein; LIM doma 59.2 3.8 0.00013 32.4 1.7 52 327-382 5-69 (77)
123 2co8_A NEDD9 interacting prote 56.0 7.5 0.00026 31.8 3.0 53 327-383 9-75 (82)
124 2l4z_A DNA endonuclease RBBP8, 55.5 8.6 0.00029 34.2 3.5 50 330-383 58-121 (123)
125 2d8s_A Cellular modulator of i 52.1 2.6 9E-05 35.3 -0.4 55 329-385 11-70 (80)
126 2pv0_B DNA (cytosine-5)-methyl 50.1 3.3 0.00011 44.4 -0.1 50 333-382 93-148 (386)
127 2lq6_A Bromodomain-containing 49.6 6.6 0.00023 33.7 1.7 30 333-362 17-48 (87)
128 1a7i_A QCRP2 (LIM1); LIM domai 49.2 5.2 0.00018 32.2 1.0 48 332-383 6-65 (81)
129 3rsn_A SET1/ASH2 histone methy 48.2 12 0.00042 36.4 3.5 42 338-381 9-58 (177)
130 2dar_A PDZ and LIM domain prot 42.6 11 0.00039 30.9 2.1 47 332-382 24-81 (90)
131 2d8y_A Eplin protein; LIM doma 40.8 24 0.00083 29.0 3.8 47 331-381 13-71 (91)
132 2d8x_A Protein pinch; LIM doma 39.5 9.3 0.00032 29.8 1.0 48 331-382 3-61 (70)
133 2ku7_A MLL1 PHD3-CYP33 RRM chi 38.0 11 0.00037 32.2 1.3 33 345-379 2-41 (140)
134 4b6d_A RAC GTPase-activating p 33.9 16 0.00056 29.5 1.6 30 333-364 19-52 (61)
135 2d8z_A Four and A half LIM dom 32.1 27 0.00093 27.0 2.6 46 333-382 5-61 (70)
136 1ptq_A Protein kinase C delta 31.9 21 0.00072 26.6 1.8 31 334-366 12-47 (50)
137 1x61_A Thyroid receptor intera 31.4 22 0.00074 27.7 1.9 47 332-382 4-63 (72)
138 1wyh_A SLIM 2, skeletal muscle 31.2 13 0.00046 28.9 0.7 46 333-382 5-63 (72)
139 2cor_A Pinch protein; LIM doma 30.6 13 0.00043 30.2 0.4 47 332-382 14-70 (79)
140 1x4l_A Skeletal muscle LIM-pro 30.5 27 0.00091 27.3 2.3 46 333-382 5-65 (72)
141 2xag_B REST corepressor 1; ami 30.1 11 0.00037 41.6 0.0 38 645-693 190-227 (482)
142 1vyx_A ORF K3, K3RING; zinc-bi 28.9 2.4 8.4E-05 33.8 -4.0 51 332-384 5-58 (60)
143 2cu8_A Cysteine-rich protein 2 28.8 36 0.0012 26.9 2.9 47 332-382 8-67 (76)
144 2d9g_A YY1-associated factor 2 27.7 23 0.00078 28.2 1.5 20 363-382 1-20 (53)
145 1b8t_A Protein (CRP1); LIM dom 26.4 18 0.00062 33.7 0.8 49 330-382 4-64 (192)
146 1x68_A FHL5 protein; four-and- 26.3 22 0.00075 28.2 1.2 46 334-383 6-66 (76)
147 3uej_A NPKC-delta, protein kin 26.1 26 0.00091 27.8 1.6 34 331-366 18-56 (65)
148 1y8f_A UNC-13 homolog A, MUNC1 25.1 30 0.001 27.6 1.8 32 332-365 23-59 (66)
149 1wig_A KIAA1808 protein; LIM d 24.9 37 0.0013 27.0 2.3 45 334-382 6-62 (73)
150 2cur_A Skeletal muscle LIM-pro 24.6 34 0.0012 26.4 2.0 47 332-382 4-61 (69)
151 2cup_A Skeletal muscle LIM-pro 24.0 31 0.0011 28.5 1.7 46 333-382 5-63 (101)
152 2yuu_A NPKC-delta, protein kin 23.8 41 0.0014 28.0 2.4 34 331-366 26-64 (83)
153 2enz_A NPKC-theta, protein kin 23.8 35 0.0012 27.1 1.9 33 332-366 22-59 (65)
154 2ehe_A Four and A half LIM dom 23.6 22 0.00077 28.4 0.7 46 334-383 16-74 (82)
155 2db6_A SH3 and cysteine rich d 23.6 24 0.00082 29.0 0.9 33 331-365 26-63 (74)
156 2dlo_A Thyroid receptor-intera 23.2 35 0.0012 27.3 1.8 47 333-383 15-73 (81)
157 1nyp_A Pinch protein; LIM doma 22.5 21 0.00073 27.4 0.4 45 334-382 6-61 (66)
158 2jtn_A LIM domain-binding prot 21.8 41 0.0014 31.0 2.3 49 330-382 57-116 (182)
159 2eli_A Protein kinase C alpha 21.8 51 0.0017 27.7 2.6 33 332-366 27-64 (85)
160 2l3k_A Rhombotin-2, linker, LI 21.1 37 0.0013 29.6 1.6 44 334-381 9-66 (123)
161 1x6a_A LIMK-2, LIM domain kina 20.5 35 0.0012 27.2 1.2 46 334-383 16-74 (81)
162 2r25_A Phosphorelay intermedia 20.2 84 0.0029 30.2 4.0 29 380-408 137-165 (167)
No 1
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=3.4e-18 Score=140.92 Aligned_cols=57 Identities=28% Similarity=0.426 Sum_probs=52.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCCC
Q 005228 640 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP 704 (707)
Q Consensus 640 ~RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks~ 704 (707)
..|.+++||.||+++|++||++|| . +|++|+..|+ |+.+||+||||||||||.|+..
T Consensus 4 ~~~~r~~WT~EE~~~L~~gV~k~G-----~-~W~~I~~~y~--f~~~RT~VdLKdk~r~L~k~~~ 60 (62)
T 1x58_A 4 GSSGRKDFTKEEVNYLFHGVKTMG-----N-HWNSILWSFP--FQKGRRAVDLAHKYHRLISGPS 60 (62)
T ss_dssp CCCCSSSCCHHHHHHHHHHHHHHC-----S-CHHHHHHHSC--CCTTCCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHh-----H-hHHHHHHhCC--CccCcccchHHHHHHHHHhccc
Confidence 356889999999999999999999 5 9999999998 6799999999999999999753
No 2
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.64 E-value=1.5e-16 Score=142.15 Aligned_cols=61 Identities=28% Similarity=0.472 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCCC
Q 005228 638 PQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP 704 (707)
Q Consensus 638 p~~RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks~ 704 (707)
...||++.+||.||+++|++||++|| .|+|+.|+..++.+| .+||.||||||||||.|++.
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G-----~g~W~~I~~~~~~~f-~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLG-----TGRWRDVKLCAFEDA-DHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHC-----SSSHHHHHSSSSSST-TCCCHHHHHHHHHHHHHTTT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhC-----CCChHHHHHHhcccc-CCCCHHHHHHHHHHHHhhcc
Confidence 34688999999999999999999999 799999999887666 89999999999999998763
No 3
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.62 E-value=2.8e-16 Score=143.61 Aligned_cols=60 Identities=28% Similarity=0.438 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 637 IPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 637 ~p~~RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
.+..||++++||.||+++|++||++|| .|+|+.|+..++..| .+||.||||||||||.|.
T Consensus 24 ~~~~rr~r~~WT~EEd~~L~~gV~k~G-----~g~W~~I~~~~~~~~-~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 24 DFGQRRIRRPFTVAEVELLVEAVEHLG-----TGRWRDVKFRAFENV-HHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHHS-----SSCHHHHHHHHHSSS-CCCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHC-----CCChHHHHHHhcccc-CCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999999 799999999876666 899999999999999974
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.58 E-value=1.6e-15 Score=138.41 Aligned_cols=60 Identities=27% Similarity=0.436 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 637 IPQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 637 ~p~~RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
....||++.+||.||+++|++||++|| .|+|+.|+..++.+| .+||.||||||||||.|.
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G-----~G~W~~Ia~~~~~~f-~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLG-----TGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHG-----GGCHHHHHHHHCSCC-SSCCSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHC-----CCCHHHHHHHhcccc-CCCCHHHHHHHHHHHHhh
Confidence 445788999999999999999999999 899999999987766 899999999999999983
No 5
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.52 E-value=3.8e-15 Score=127.90 Aligned_cols=53 Identities=26% Similarity=0.478 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 645 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 645 r~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
++||.||+++|++||++|| .|+|+.|+..++..| ++||.||||||||||.|++
T Consensus 1 r~WT~eEd~~L~~gv~k~G-----~g~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLG-----TGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHC-----SSCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC-----CCCcHHHHHhhcccc-CCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999 799999999877545 8999999999999999743
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.41 E-value=1.7e-13 Score=111.93 Aligned_cols=56 Identities=39% Similarity=0.591 Sum_probs=48.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 640 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 640 ~RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
..++|.+||.||+++|+++|++|| .++|+.|...++ +.+||.++++||||||.|..
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G-----~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYG-----EGNWAAISKNYP---FVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHC-----TTCHHHHHHHSC---CSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-----CCchHHHHhhcC---CCCCCHHHHHHHHHHHhccC
Confidence 345678999999999999999999 789999999865 47999999999999998854
No 7
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.23 E-value=1e-11 Score=96.80 Aligned_cols=52 Identities=40% Similarity=0.696 Sum_probs=47.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
++.+||.||++.|+++|++|| .++|+.|...++ | .+||.++++++|+||.|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G-----~~~W~~Ia~~~~--~-~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYG-----EGNWSKILLHYK--F-NNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHC-----TTCHHHHHHHSC--C-SSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHC-----cCCHHHHHHHcC--C-CCCCHHHHHHHHHHHHcc
Confidence 467999999999999999999 789999999865 3 489999999999999986
No 8
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.21 E-value=1.9e-11 Score=99.78 Aligned_cols=58 Identities=38% Similarity=0.639 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 638 PQLRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 638 p~~RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
+..++++.+||.||+++|+.+|++|| .++|+.|...++ | .+||.++++++|+|+++..
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G-----~~~W~~Ia~~~~--~-~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYG-----EGNWSKILLHYK--F-NNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHC-----SSCHHHHHHHSC--C-SSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC-----CCcHHHHHHHcC--c-CCCCHHHHHHHHHHHcCCC
Confidence 45688899999999999999999999 789999999765 3 4899999999999998764
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.72 E-value=1.3e-08 Score=78.57 Aligned_cols=49 Identities=31% Similarity=0.612 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhcc
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
++.+||.||++.|+++|++|| .++|..|... +++||..+++++|+++..
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNG-----TDDWKVIANY-----LPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHC-----SSCHHHHHHT-----STTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhC-----CCCHHHHHHH-----cCCCCHHHHHHHHHHHcC
Confidence 467999999999999999999 6899999985 368999999999999864
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.69 E-value=2.4e-08 Score=79.23 Aligned_cols=53 Identities=30% Similarity=0.565 Sum_probs=46.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 641 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 641 RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
..++.+||.||++.|+++|++|| .++|..|... +++||..+++++|+++.+-.
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFG-----QQDWKFLASH-----FPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTC-----TTCHHHHHHH-----CSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-----CCCHHHHHHH-----ccCCCHHHHHHHHHHHcCCc
Confidence 34667999999999999999999 6799999986 36899999999999997643
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.63 E-value=3.9e-08 Score=76.02 Aligned_cols=49 Identities=33% Similarity=0.615 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhcc
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
++.+||.||++.|+++|++|| .++|..|... +.+||..+++++|.|...
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYG-----PKRWSVIAKH-----LKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHC-----TTCHHHHHTT-----STTCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHC-----cChHHHHHHH-----cCCCCHHHHHHHHHHHcC
Confidence 467999999999999999999 6789999985 368999999999999864
No 12
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.50 E-value=4.2e-08 Score=79.98 Aligned_cols=50 Identities=30% Similarity=0.781 Sum_probs=44.8
Q ss_pred cccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccchhhh
Q 005228 332 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 332 eqn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~~ 383 (707)
..+.|..|+..|.||.|+ +|+.++|..|++.+...-..|.||||.|...+
T Consensus 7 ~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDGGELICCD--GCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCCSSCEECS--SCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCCCCEEEcC--CCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 347899999999999999 99999999999988777788999999997554
No 13
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.50 E-value=1.7e-07 Score=74.81 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCCC
Q 005228 642 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP 704 (707)
Q Consensus 642 RkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks~ 704 (707)
..+.+||.||++.|+++|++|| .++|..|.... ++||..+.+++|.++....+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G-----~~~W~~Ia~~~-----~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCG-----FGNWQDVANQM-----CTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTC-----TTCHHHHHHHH-----TTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-----cCcHHHHHHHh-----CCCCHHHHHHHHHHHccCCC
Confidence 3567999999999999999999 68999999864 58999999999999877553
No 14
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.49 E-value=5.2e-08 Score=77.86 Aligned_cols=48 Identities=42% Similarity=0.875 Sum_probs=44.0
Q ss_pred ccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccchhh
Q 005228 333 QNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 333 qn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~ 382 (707)
...|..|+..|+||.|+ +|+.++|-.|++.+...-..|.||||.|...
T Consensus 5 ~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCCSSCEECS--SSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCCCcEEEcC--CCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 46899999999999999 9999999999998888888999999999653
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=1.6e-07 Score=76.61 Aligned_cols=53 Identities=28% Similarity=0.471 Sum_probs=46.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 641 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 641 RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
..++.+||.||++.|+.+|++|| .++|..|.... .+||..+.+++|++..+-.
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G-----~~~W~~Ia~~l-----~~Rt~~qcr~Rw~~~L~p~ 58 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYG-----KNQWSRIASLL-----HRKSAKQCKARWYEWLDPS 58 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTC-----SSCHHHHHHHS-----TTCCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-----cCCHHHHHHHh-----cCCCHHHHHHHHHHHcCCc
Confidence 34667999999999999999999 68999999863 5899999999999987643
No 16
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.48 E-value=7.7e-08 Score=77.59 Aligned_cols=49 Identities=33% Similarity=0.839 Sum_probs=44.7
Q ss_pred cccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccchhh
Q 005228 332 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 332 eqn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~ 382 (707)
....|..|+..|+||.|+ +|+.++|-.|++.+.+.-..|.||||.|.+.
T Consensus 10 ~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQGGEIILCD--TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCCSSEEECS--SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCCCcEEECC--CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 457899999999999999 9999999999999877778999999999764
No 17
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.47 E-value=1e-07 Score=83.10 Aligned_cols=60 Identities=22% Similarity=0.533 Sum_probs=49.6
Q ss_pred CcccCCCCcc--ccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccchhhhh
Q 005228 323 DSLATSGWTE--QNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS 384 (707)
Q Consensus 323 d~~~~~~~~e--qn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~~a 384 (707)
|......|.+ .+.|..|+.+|+||.|+ +||.++|-.|+..+..--+.|.||||.|.+...
T Consensus 13 ~~~~~~~~~d~n~~~C~vC~~~g~LL~CD--~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 13 DIIDEFGTLDDSATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp CCCCCCCSSSSSSSCCSSSCSSSCCEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred cccccccccCCCCCcCcCcCCCCCEEECC--CCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 3334444544 45799999999999999 999999999998888777899999999987643
No 18
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.45 E-value=9.4e-08 Score=78.82 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=44.0
Q ss_pred cccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccchh
Q 005228 332 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 381 (707)
Q Consensus 332 eqn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y 381 (707)
....|..|+.+|+||.|+ +|+.++|..|+..+..--..|+||||.|.-
T Consensus 11 ~~~~C~vC~~~~~ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCCTTCEECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCcCCCCCCCeEEECC--CCCCceecccCCCccCcCCCCCEECccccC
Confidence 346799999999999999 999999999999998888999999999963
No 19
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=1.1e-07 Score=75.22 Aligned_cols=48 Identities=42% Similarity=0.889 Sum_probs=43.9
Q ss_pred ccccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccch
Q 005228 331 TEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 380 (707)
Q Consensus 331 ~eqn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~ 380 (707)
.....|..|+..|.||.|+ +|+.++|-.|++.+.+.-..|.||||.|.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCSSCCEECS--SSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCCCeEEEcC--CCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3457899999999999999 99999999999988888889999999995
No 20
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.42 E-value=1.2e-07 Score=76.54 Aligned_cols=50 Identities=34% Similarity=0.830 Sum_probs=44.8
Q ss_pred cccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccchhhh
Q 005228 332 EQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 332 eqn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~~ 383 (707)
....|..|+..|+||.|+ +|+.++|..|++.+.+--..|.||||.|..+.
T Consensus 8 ~~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDGGELLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCCSSCBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCCCCEEEcC--CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 356799999999999999 99999999999988777789999999997643
No 21
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.38 E-value=2.6e-07 Score=73.61 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhc
Q 005228 644 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 700 (707)
Q Consensus 644 Rr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~ 700 (707)
+.+||.+|++.|+++|++|| .++|..|..... .+||..+.+++|.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G-----~~~W~~IA~~~~----~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG-----LGNWADIADYVG----NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT-----TTCHHHHHHHHC----SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHC----CCCCHHHHHHHHHHHc
Confidence 45799999999999999999 789999998532 2899999999999864
No 22
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.38 E-value=1.5e-07 Score=78.61 Aligned_cols=55 Identities=31% Similarity=0.678 Sum_probs=46.3
Q ss_pred cCCCCccccccccccCCC-----cEEecCCCCCcccccccccCCCcccCCCCCccCccchhhhh
Q 005228 326 ATSGWTEQNLCVKCNKDG-----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS 384 (707)
Q Consensus 326 ~~~~~~eqn~CikC~kdG-----qLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~~a 384 (707)
+.+...+...|..|+..| +||+|+ +|+.+||..|++.+. -++|.||||.|..+++
T Consensus 9 ~~~~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 9 MQSLIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPY--IPEGQWLCRHCLQSRA 68 (71)
T ss_dssp -CCCCCSSCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCSS--CCSSCCCCHHHHHHHH
T ss_pred cccCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCCc--CCCCCcCCccCcCcCc
Confidence 355667788999999886 899999 999999999999764 5789999999976543
No 23
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.37 E-value=1.2e-07 Score=76.23 Aligned_cols=52 Identities=17% Similarity=0.602 Sum_probs=45.2
Q ss_pred cccccccccCC-----CcEEecCCCCCcccccccccCCCccc---CCCCCccCccchhhhhH
Q 005228 332 EQNLCVKCNKD-----GQLLSCSSSTCPLAVHENCLGFPVKF---DEKGNFHCPFCAYTLSI 385 (707)
Q Consensus 332 eqn~CikC~kd-----GqLL~Cs~~gCplavH~~Clg~s~~f---Dd~GnFyCP~C~Y~~a~ 385 (707)
+...|..|+.. |+||+|+ +|+.+||..|++.+..- ...|.||||.|.+..++
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 45789999987 9999999 99999999999987654 48899999999876653
No 24
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.34 E-value=2.7e-07 Score=76.00 Aligned_cols=51 Identities=31% Similarity=0.600 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 642 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 642 RkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
.++.+||.||++.|+++|++|| . +|..|... +++||..++|.+|.++.++.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G-----~-~W~~Ia~~-----~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFG-----R-RWTKISKL-----IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTC-----S-CHHHHHHH-----HSSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-----c-CHHHHHHH-----cCCCCHHHHHHHHHHHHHHH
Confidence 3567999999999999999999 3 99999984 36899999999999886643
No 25
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=4.4e-07 Score=74.79 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
.+.+||.||.+.|+++|++||+.....++|..|-... .+||..+.+.+|.++.+..
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~-----~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL-----GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh-----CCCCHHHHHHHHHHHHHHH
Confidence 4569999999999999999992111127999999863 5899999999997766543
No 26
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.30 E-value=5.2e-07 Score=76.04 Aligned_cols=49 Identities=31% Similarity=0.322 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 642 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 642 RkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
-++.+||.||++.|++.|++|| .+|+.|... + +||..++|++|+.|.+.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G------~kW~~IA~~-----l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHG------NDWATIGAA-----L-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHS------SCHHHHHHH-----H-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHC------CCHHHHHHH-----h-CCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999 359999884 4 89999999999988764
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.29 E-value=7.6e-07 Score=76.85 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
++.+||.||++.|+.+|++|| .+|+.|... +++||..++|.+|+++.|+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G------~~W~~Ia~~-----l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLG------NRWAEIAKL-----LPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHS------SCHHHHHTT-----CTTCCHHHHHHHHHHHTC--
T ss_pred cccCCCHHHHHHHHHHHHHhC------CCHHHHHHH-----cCCCCHHHHHHHHHHHHhcc
Confidence 456999999999999999999 489999873 47999999999999998763
No 28
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.28 E-value=3.4e-07 Score=86.21 Aligned_cols=48 Identities=29% Similarity=0.740 Sum_probs=43.7
Q ss_pred ccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccchhh
Q 005228 333 QNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 333 qn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~ 382 (707)
.+.|..|+.+|+||.|+ +||.++|..|++.+...-..|.|+||.|.-.
T Consensus 4 ~~~C~~C~~~g~ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 4 EDWCAVCQNGGELLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSSCTTTCCCSSCEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCccccCCCCCeeeecC--CCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 46799999999999999 9999999999998888888999999999643
No 29
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.27 E-value=4.2e-07 Score=78.37 Aligned_cols=50 Identities=32% Similarity=0.757 Sum_probs=43.6
Q ss_pred CccccccccccCCC-----cEEecCCCCCcccccccccCCCcccCCCCCccCccchhhh
Q 005228 330 WTEQNLCVKCNKDG-----QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 330 ~~eqn~CikC~kdG-----qLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~~ 383 (707)
.-+...|.-|+..| +||+|+ +|+.+||..|++.+. -+.|.||||.|.+..
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSS--CCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCc--cCCCceECccccCcc
Confidence 44568999999988 999999 999999999999874 577999999997654
No 30
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.26 E-value=4e-07 Score=87.46 Aligned_cols=48 Identities=29% Similarity=0.732 Sum_probs=44.0
Q ss_pred ccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccchhh
Q 005228 333 QNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 333 qn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~ 382 (707)
.+.|..|+.+|+||+|+ +||.++|-.|++.+..--..|.|+||.|.-.
T Consensus 7 ~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 7 EDWCAVCQNGGDLLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSBTTTCCCEEEEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCceEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 36799999999999999 9999999999998888888999999999654
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.19 E-value=1.7e-06 Score=74.66 Aligned_cols=49 Identities=31% Similarity=0.600 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhcc
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
++.+||.||.+.|+.+|++|| .++|..|... +++||..+.+++|++...
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g-----~~~W~~Ia~~-----l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYG-----PKRWSVIAKH-----LKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC-----TTCHHHHHTT-----STTCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhC-----CCcHHHHhhh-----hcCCCHHHHHHHHHhccC
Confidence 457999999999999999999 6799999874 469999999999999764
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.18 E-value=1.3e-06 Score=78.34 Aligned_cols=50 Identities=34% Similarity=0.814 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
.+.+||.||++.|+++|++|| .+|+.|... +++||..++|++|++|.++.
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G------~~W~~Ia~~-----l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYG------RQWAIIAKF-----FPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC------SCHHHHHTT-----STTCCHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHHC------cCHHHHHHH-----cCCCCHHHHHHHHHHHHHhc
Confidence 456899999999999999999 589999873 47999999999999998764
No 33
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.17 E-value=7.1e-07 Score=76.71 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=42.6
Q ss_pred ccccccccCC-----CcEEecCCCCCcccccccccCCCcc----cCCCCCccCccchhhh
Q 005228 333 QNLCVKCNKD-----GQLLSCSSSTCPLAVHENCLGFPVK----FDEKGNFHCPFCAYTL 383 (707)
Q Consensus 333 qn~CikC~kd-----GqLL~Cs~~gCplavH~~Clg~s~~----fDd~GnFyCP~C~Y~~ 383 (707)
...|..|+.. ++||+|+ +|+.+||..|++.+.. ....|.|||+.|....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 4679999987 8999999 9999999999998776 3789999999996543
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.16 E-value=1.9e-06 Score=77.10 Aligned_cols=50 Identities=26% Similarity=0.643 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
++.+||.||++.|+.+|++|| .+|+.|... +++||..++|.+|+++.|+.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G------~~W~~Ia~~-----l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLG------NRWAEIAKL-----LPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC------SCHHHHGGG-----STTCCHHHHHHHHHTTTTC-
T ss_pred ccccCCHHHHHHHHHHHHHHC------cCHHHHHHH-----CCCCCHHHHHHHHHHHHhcc
Confidence 457999999999999999999 489999974 47999999999999998863
No 35
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.14 E-value=9.1e-07 Score=84.73 Aligned_cols=48 Identities=23% Similarity=0.629 Sum_probs=43.9
Q ss_pred ccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccchhh
Q 005228 333 QNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 333 qn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~ 382 (707)
.+.|..|+.+|+||.|+ +|+.++|-.|+..+..--..|.|+||.|...
T Consensus 2 ~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECC--CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 46799999999999999 9999999999988877778999999999765
No 36
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.14 E-value=2.7e-06 Score=72.26 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=43.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhc
Q 005228 641 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 700 (707)
Q Consensus 641 RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~ 700 (707)
+..+.+||.+|+..|++||++|| ++|..|.... .+||..+.+.+|.++.
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G------~~W~~IA~~v-----~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK------DDWNKVSEHV-----GSRTQDECILHFLRLP 63 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS------SCHHHHHHHH-----SSCCHHHHHHHHTTSC
T ss_pred cccCCCcCHHHHHHHHHHHHHhC------CCHHHHHHHc-----CCCCHHHHHHHHHHhc
Confidence 44567999999999999999999 7999999863 5799999999999983
No 37
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.10 E-value=1e-06 Score=76.93 Aligned_cols=50 Identities=20% Similarity=0.666 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
.+.+||.||++.|+.+|.+|| .+|+.|... +++||..++|.+|+.|.++.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G------~~W~~Ia~~-----l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYG------PKWNKISKF-----LKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTC------SCHHHHHHH-----HSSSCHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhC------cCHHHHHHH-----CCCCCHHHHHHHHHHHHhhH
Confidence 457999999999999999999 389999984 36999999999999998764
No 38
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=1.5e-06 Score=75.39 Aligned_cols=52 Identities=27% Similarity=0.646 Sum_probs=44.9
Q ss_pred CCCCccccccccccCCC---cEEecCCCCCcccccccccCCCcccCCCCCccCccch
Q 005228 327 TSGWTEQNLCVKCNKDG---QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 380 (707)
Q Consensus 327 ~~~~~eqn~CikC~kdG---qLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~ 380 (707)
.....+...|..|+..| +||.|+ +|+.++|-.|++.+..--+.|.||||.|.
T Consensus 10 ~~~~~~~~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~ 64 (92)
T 2e6r_A 10 SAQFIDSYICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64 (92)
T ss_dssp CCCCCCCCCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHH
T ss_pred hhhccCCCCCccCCCcCCCCCEEEcC--CCCchhccccCCCCcccCCCCCcCCccCc
Confidence 33455667899999987 599999 99999999999988877789999999994
No 39
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.08 E-value=4.4e-06 Score=70.36 Aligned_cols=54 Identities=19% Similarity=0.471 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 642 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 642 RkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
-.+.+||.+|...|+.+|++||. +...+|.+|-.. .++||..+.+.+|.+|++.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~--~~~~rW~~IA~~-----vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPR--GSSDCWDKIARC-----VPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCS--SSHHHHHHHGGG-----CSSSCHHHHHHHHHHHHSS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHH-----cCCCCHHHHHHHHHHHHHc
Confidence 35568999999999999999992 234689999985 3689999999999999764
No 40
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.07 E-value=3.4e-06 Score=75.39 Aligned_cols=50 Identities=28% Similarity=0.618 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
++.+||.||++.|+++|++|| .++|..|... +++||..+++++|.++...
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g-----~~~W~~Ia~~-----l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYG-----PKRWSDIAKH-----LKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTC-----SCCHHHHHHH-----SSSCCHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHC-----CCCHHHHHHH-----hcCCcHHHHHHHHHHhccc
Confidence 557999999999999999999 6789999985 3689999999999997653
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.07 E-value=3.5e-06 Score=75.87 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
.+.+||.||++.|+.+|.+|| .+|+.|... +++||..++|.+|+++.++.
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G------~~W~~Ia~~-----l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLG------SKWSVIAKL-----IPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSC------SCHHHHTTT-----STTCCHHHHHHHHHHTTGGG
T ss_pred cCCCCCHHHHHHHHHHHHHHC------cCHHHHHHH-----cCCCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999 589999873 47999999999999988764
No 42
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=2.2e-06 Score=69.18 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhcc
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
++.+||.||++.|+..|++|| . +|..|.. . .+||..+.+++|.++.+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g-----~-~W~~Ia~-~-----~gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMP-----T-QWRTIAP-I-----IGRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCT-----T-CHHHHHH-H-----HSSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC-----C-CHHHHhc-c-----cCcCHHHHHHHHHHHhC
Confidence 456899999999999999999 3 9999999 3 36999999999999865
No 43
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.06 E-value=4.5e-06 Score=74.85 Aligned_cols=51 Identities=33% Similarity=0.600 Sum_probs=44.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhcc
Q 005228 640 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 640 ~RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
...++.+||.||++.|+.+|.+|| . +|..|... +++||..+++++|+|...
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G-----~-~W~~Ia~~-----~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHG-----S-DWKMIAAT-----FPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHT-----T-CHHHHHHT-----CTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-----C-CHHHHHHH-----cCCCCHHHHHHHHhhhcc
Confidence 355678999999999999999999 4 99999874 368999999999999764
No 44
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.04 E-value=4.1e-06 Score=73.10 Aligned_cols=48 Identities=23% Similarity=0.500 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhcc
Q 005228 644 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 644 Rr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
+.+||.||++.|+.+|.+|| .++|..|... .++||..+.+++|+|...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYG-----AKDWIRISQL-----MITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHC-----SSCHHHHHHH-----TTTSCHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHC-----CCCHHHHhhh-----cCCCCHHHHHHHHHHHHc
Confidence 46899999999999999999 6899999985 358999999999999765
No 45
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.02 E-value=3.6e-06 Score=75.45 Aligned_cols=49 Identities=29% Similarity=0.779 Sum_probs=42.6
Q ss_pred CccccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccch
Q 005228 330 WTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 380 (707)
Q Consensus 330 ~~eqn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~ 380 (707)
-..++.|.-|+..|+||.|+..+||.++|-.|++ ..--..|+||||.|.
T Consensus 12 ~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 12 QMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 3567889999999999999988999999999999 334468999999885
No 46
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.02 E-value=2.1e-06 Score=66.15 Aligned_cols=44 Identities=34% Similarity=0.769 Sum_probs=38.5
Q ss_pred ccccccCCC---cEEecCCCCCcccccccccCCCcccCCCCCccCccch
Q 005228 335 LCVKCNKDG---QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 380 (707)
Q Consensus 335 ~CikC~kdG---qLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~ 380 (707)
.|..|++.| +||.|+ +|+.++|-.|++.+..--+.|.||||.|.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred CCCCCCCCCCCCCEEECC--CCChhhCcccCCCCcCCCCCCcEECcCcc
Confidence 478888665 799999 99999999999887777778999999995
No 47
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.93 E-value=1.1e-05 Score=74.47 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
++.+||.+|+..|+.+|++|| .+|+.|... +++||..++|.+|+.|.|+.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g------~~W~~Ia~~-----l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLG------NRWAEIAKL-----LPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC------SCHHHHHTT-----STTCCHHHHHHHHHTTTCC-
T ss_pred cccCCChHHHHHHHHHHHHHC------CCHHHHHHH-----CCCCCHHHHHHHHHHHHhcc
Confidence 567999999999999999999 489999973 47999999999999998863
No 48
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.93 E-value=1e-05 Score=72.92 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhcc
Q 005228 644 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 644 Rr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
+.+||.||++.|+.+|.+|| .++|..|... +++||..+..++|+|...
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g-----~~~W~~Ia~~-----~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENG-----PQNWPRITSF-----LPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-----SCCGGGGTTS-----CTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhC-----cCCHHHHHHH-----HCCCCHHHHHHHHhhccC
Confidence 46899999999999999999 7899999874 468999999999998764
No 49
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=7.4e-06 Score=69.36 Aligned_cols=44 Identities=30% Similarity=0.652 Sum_probs=40.4
Q ss_pred ccccccC---CCcEEecCCCCCcccccccccCCCcccCCCC-CccCccch
Q 005228 335 LCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKG-NFHCPFCA 380 (707)
Q Consensus 335 ~CikC~k---dGqLL~Cs~~gCplavH~~Clg~s~~fDd~G-nFyCP~C~ 380 (707)
.|..|+. .|+||+|+ +|+.++|-.|++.+...-.+| .||||.|.
T Consensus 28 ~C~vC~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCD--ECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCSTTEEECS--SSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCcCcCCcCCCCCEEEcC--CCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 7899995 68999999 999999999999888888899 99999995
No 50
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.81 E-value=1e-05 Score=67.14 Aligned_cols=44 Identities=30% Similarity=0.694 Sum_probs=39.4
Q ss_pred ccccccC---CCcEEecCCCCCcccccccccCCCcccCCCC-CccCccch
Q 005228 335 LCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKG-NFHCPFCA 380 (707)
Q Consensus 335 ~CikC~k---dGqLL~Cs~~gCplavH~~Clg~s~~fDd~G-nFyCP~C~ 380 (707)
.|..|++ +|+||.|+ +|+.++|-.|++.+.+.-.+| +||||.|.
T Consensus 20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 67 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67 (70)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTTTS
T ss_pred CCcCCCCcCCCCCEEEcC--CCCCceecccCCCCcCCCCCCCCcCCcCcc
Confidence 6778885 68999999 999999999999887777889 99999995
No 51
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=97.80 E-value=9.6e-06 Score=76.00 Aligned_cols=61 Identities=23% Similarity=0.563 Sum_probs=48.4
Q ss_pred ccchhhhcCCCcccCCCCccccccccccCCCcEEecCCCCCcccccccccCCCcc---c----CCCCCccCccchhh
Q 005228 313 FLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVK---F----DEKGNFHCPFCAYT 382 (707)
Q Consensus 313 fLsS~~~~~~d~~~~~~~~eqn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~---f----Dd~GnFyCP~C~Y~ 382 (707)
|++...+...|. -++.|--|+.+|+||.|+ +||-++|..|+..++. + .++|.|+||.|..+
T Consensus 50 y~~~~~~~d~Dg-------~~d~C~vC~~GG~LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 50 YMSDDISRDSDG-------MDEQCRWCAEGGNLICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp HHHSCCCBCTTS-------CBCSCSSSCCCSSEEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred HhcCCceecCCC-------CCCeecccCCCCcEEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 555554444333 257899999999999999 9999999999986664 2 47999999999764
No 52
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.80 E-value=1.9e-05 Score=65.86 Aligned_cols=55 Identities=24% Similarity=0.748 Sum_probs=43.4
Q ss_pred cCCCCccccccccccC--CCcEEecCCCCCcc-cccccccCCCcccCCCCCccCccchhhh
Q 005228 326 ATSGWTEQNLCVKCNK--DGQLLSCSSSTCPL-AVHENCLGFPVKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 326 ~~~~~~eqn~CikC~k--dGqLL~Cs~~gCpl-avH~~Clg~s~~fDd~GnFyCP~C~Y~~ 383 (707)
...+-.+...|+ |++ .|.+|.|+.-.|++ .+|-.|+|-.. ...|.||||.|...+
T Consensus 9 ~~~d~~~~~~C~-C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~--~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 9 MPVDPNEPTYCL-CHQVSYGEMIGCDNPDCSIEWFHFACVGLTT--KPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCCTTSCCCST-TCCCSCSSEECCSCSSCSCCCEETTTTTCSS--CCSSCCCCTTTSSCS
T ss_pred cccCCCCCCEEE-CCCCCCCCEeEeeCCCCCCccEecccCCcCc--CCCCCEECCCCCccc
Confidence 345556778896 999 79999999555995 99999999654 456999999996543
No 53
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.80 E-value=2.9e-05 Score=71.62 Aligned_cols=50 Identities=30% Similarity=0.577 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
++.+||.||++.|+.+|++|| .++|..|... +++||..+++++|+++...
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g-----~~~W~~Ia~~-----l~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYG-----PKRWSVIAKH-----LKGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC-----SCCHHHHHHT-----STTCCHHHHHHHHHHTTCT
T ss_pred CCCCCChHHHHHHHHHHHHhC-----cccHHHHHHH-----cCCCCHHHHHHHHHHHhCc
Confidence 467999999999999999999 5789999874 4799999999999998754
No 54
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.90 E-value=4.8e-06 Score=71.62 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
.+.+||.||++.|+++|.+|| . +|..|-.. +.+||..++|.+|.++.++.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G-----~-~W~~IA~~-----l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHG-----R-NWSAIARM-----VGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 456999999999999999999 3 79999874 47999999999999988764
No 55
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.68 E-value=2.3e-05 Score=66.49 Aligned_cols=44 Identities=30% Similarity=0.707 Sum_probs=39.4
Q ss_pred ccccccCC---CcEEecCCCCCcccccccccCCCcccCCCCC-ccCccch
Q 005228 335 LCVKCNKD---GQLLSCSSSTCPLAVHENCLGFPVKFDEKGN-FHCPFCA 380 (707)
Q Consensus 335 ~CikC~kd---GqLL~Cs~~gCplavH~~Clg~s~~fDd~Gn-FyCP~C~ 380 (707)
.|..|++. ++||.|+ +|+.++|-.|++.+...-..|+ ||||.|.
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCCCcccCCCCCCceECcCcc
Confidence 57777776 6799999 9999999999999988889999 9999995
No 56
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.67 E-value=2.8e-05 Score=69.10 Aligned_cols=44 Identities=36% Similarity=0.816 Sum_probs=40.2
Q ss_pred ccccccC---CCcEEecCCCCCcccccccccCCCcccCCCCCccCccch
Q 005228 335 LCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 380 (707)
Q Consensus 335 ~CikC~k---dGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~ 380 (707)
.|..|+. +|+||.|+ +|+.++|-.|++.+...-.+|.||||.|.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCD--DCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp CCTTTTCCTTTTTEEECS--SSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred ccCcccccCCCCceEEcC--CCCccccccccCCCccCCCCCCeECcccc
Confidence 5888887 68999999 99999999999988888899999999994
No 57
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.64 E-value=2.5e-05 Score=68.36 Aligned_cols=47 Identities=30% Similarity=0.731 Sum_probs=42.1
Q ss_pred cccccccccCCCcE---EecCCCCCcccccccccCCCcccCCCCCccCccch
Q 005228 332 EQNLCVKCNKDGQL---LSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 380 (707)
Q Consensus 332 eqn~CikC~kdGqL---L~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~ 380 (707)
..+.|..|+..|+| |.|+ +|+-++|..|++....-...|.|+||.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCT--TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECS--SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECC--CCCCCcChHHhCCccccccccCccCCcCC
Confidence 45789999999997 9998 99999999999988765568999999985
No 58
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.62 E-value=3.1e-05 Score=68.56 Aligned_cols=44 Identities=27% Similarity=0.729 Sum_probs=39.8
Q ss_pred ccccccCC----CcEEecCCCCCcccccccccCCCcccCCCCCccCccch
Q 005228 335 LCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 380 (707)
Q Consensus 335 ~CikC~kd----GqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~ 380 (707)
.|..|+.. |+||.|+ +|+.++|-.|+..+...-..|+||||.|.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd--~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCD--SCDRGFHMECCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp CBTTTCCCCCTTCCCEECT--TTCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred ccccccCcCCCccceEEcC--CCCCeeecccCCCCCCCCCCCCeECCCCC
Confidence 68888875 4899999 99999999999988888899999999995
No 59
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.60 E-value=2.7e-05 Score=68.20 Aligned_cols=54 Identities=28% Similarity=0.734 Sum_probs=45.3
Q ss_pred CCCcccc--ccccccCCCc---EEecCCCCCcccccccccCCCcccCCCCCccCccchhhh
Q 005228 328 SGWTEQN--LCVKCNKDGQ---LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 328 ~~~~eqn--~CikC~kdGq---LL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~~ 383 (707)
..|.=.+ .|..|++.|. ||.|+ +|+.++|..|+..+...-.+|+||||.|....
T Consensus 47 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 47 AGWQCPECKVCQNCKQSGEDSKMLVCD--TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp TTCCCTTTCCCTTTCCCSCCTTEEECS--SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cCccCCcCCcccccCccCCCCCeeECC--CCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 4554433 6889999885 99999 99999999999988887788999999997654
No 60
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.59 E-value=3.1e-05 Score=63.79 Aligned_cols=49 Identities=31% Similarity=0.685 Sum_probs=41.9
Q ss_pred ccccccccccCC--C-cEEecCCCCCcccccccccCCCcccCCCCCccCccchh
Q 005228 331 TEQNLCVKCNKD--G-QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 381 (707)
Q Consensus 331 ~eqn~CikC~kd--G-qLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y 381 (707)
.+...|..|++. | .+|.|+ +|+..+|-.|+|.+..-.+.|.||||.|..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcC--CCCcccccccCCCCccCCCCCCEEChhccC
Confidence 344569899886 4 699999 999999999999988877789999999954
No 61
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.58 E-value=2.7e-05 Score=77.78 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=37.6
Q ss_pred cccccccC---CCcEEecCCCCCcccccccccCCCcccCCCC-CccCccch
Q 005228 334 NLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEKG-NFHCPFCA 380 (707)
Q Consensus 334 n~CikC~k---dGqLL~Cs~~gCplavH~~Clg~s~~fDd~G-nFyCP~C~ 380 (707)
..|..|+. .|+||+|+ +|+.++|-.|++.+..--++| +||||.|.
T Consensus 175 c~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp TSCSSSCCCCC--CCEECS--SSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred CCCcCCCCCCCCCCeEEcC--CCCcceeCccCCCCcccCCCCCCCCCcCCc
Confidence 37999998 68999999 999999999999888877899 99999994
No 62
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.54 E-value=6.1e-05 Score=66.06 Aligned_cols=51 Identities=22% Similarity=0.523 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhcc
Q 005228 644 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 644 Rr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
+.+||.+|+..|+.+|.+||. +...+|.+|... .++||..+.+.+|.+|.+
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~--~~~~rW~~IA~~-----vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDK--DTPDRWANVARA-----VEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCT--TCTTHHHHHHHH-----STTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHH-----cCCCCHHHHHHHHHHHHH
Confidence 458999999999999999982 234689999996 368999999999999863
No 63
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.53 E-value=3.4e-05 Score=62.18 Aligned_cols=51 Identities=25% Similarity=0.768 Sum_probs=38.2
Q ss_pred CCccccccccccC--CCcEEecCCCCCc-ccccccccCCCcccCCCCCccCccchhh
Q 005228 329 GWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 329 ~~~eqn~CikC~k--dGqLL~Cs~~gCp-lavH~~Clg~s~~fDd~GnFyCP~C~Y~ 382 (707)
+-.+...| .|++ .|.+|.|+.-.|+ -.+|-.|+|-+. ...|.||||.|.-+
T Consensus 6 d~~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~--~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT--KPRGKWFCPRCSQE 59 (60)
T ss_dssp ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSS--CCSSCCCCHHHHC-
T ss_pred CCCCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCc--CCCCCEECcCccCc
Confidence 34456678 4998 7999999944499 589999999544 45699999999644
No 64
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.48 E-value=4.3e-05 Score=61.59 Aligned_cols=51 Identities=29% Similarity=0.860 Sum_probs=39.0
Q ss_pred CCccccccccccC--CCcEEecCCCCCcc-cccccccCCCcccCCCCCccCccchhh
Q 005228 329 GWTEQNLCVKCNK--DGQLLSCSSSTCPL-AVHENCLGFPVKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 329 ~~~eqn~CikC~k--dGqLL~Cs~~gCpl-avH~~Clg~s~~fDd~GnFyCP~C~Y~ 382 (707)
+-.+...| .|++ .|.+|.|+.-+|+. .+|-.|+|-+. ...|.||||.|.-+
T Consensus 5 d~~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~--~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTT--KPKGKWFCPRCVQE 58 (59)
T ss_dssp ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSS--CCSSCCCCHHHHCC
T ss_pred CCCCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCccc--CCCCCEECcCccCc
Confidence 34456678 6999 89999999555995 99999999655 35699999999643
No 65
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00024 Score=57.13 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=45.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 640 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 640 ~RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
.|+...+||++|.+.+++|+.+|| .+|..|... +++||..++...|-...|.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g------k~w~~Ia~~-----l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP------KNFGLIASY-----LERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST------TCHHHHHHH-----CTTSCHHHHHHHHHHHTCC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC------CCHHHHHHH-----cCCCCHHHHHHHHHHhcCC
Confidence 466778999999999999999999 489999863 5789999999999877664
No 66
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.38 E-value=0.00024 Score=62.01 Aligned_cols=45 Identities=22% Similarity=0.596 Sum_probs=35.1
Q ss_pred cccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccchhhh
Q 005228 336 CVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 336 CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~~ 383 (707)
|-.|..+|.||.|+ +|+..+|..|++.+..-. .+.||||.|.-..
T Consensus 33 C~~~~~~~~mi~Cd--~C~~w~H~~C~~~~~~~~-p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 33 CGFTHDDGYMICCD--KCSVWQHIDCMGIDRQHI-PDTYLCERCQPRN 77 (98)
T ss_dssp TSCCSCSSCEEEBT--TTCBEEETTTTTCCTTSC-CSSBCCTTTSSSC
T ss_pred CCCccCCCcEEEcC--CCCCcCcCcCCCCCccCC-CCCEECCCCcCCC
Confidence 33444568899999 999999999999876433 3589999997543
No 67
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.25 E-value=4.9e-05 Score=70.33 Aligned_cols=48 Identities=25% Similarity=0.633 Sum_probs=40.6
Q ss_pred ccccccccCCCcEEecCCCCCcccccccccCCCc------c-cCCCCCccCccchhh
Q 005228 333 QNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPV------K-FDEKGNFHCPFCAYT 382 (707)
Q Consensus 333 qn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~------~-fDd~GnFyCP~C~Y~ 382 (707)
++.|--|+.+|+||.|+ +||-++|.+|+.... . .+++|.|+|++|.-+
T Consensus 57 ~~~C~vC~dGG~LlcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp BSSCTTTCCCSEEEECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCcCeecCCCCeeEecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 35699999999999999 999999999998542 2 257999999999654
No 68
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.21 E-value=0.00028 Score=71.42 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 642 RKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 642 RkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
..+.+||.||++.|++.|++||....+...|+.|... +++||.-++|++|++..+..
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~-----LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY-----VPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT-----STTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH-----cCCCCHHHHHHHHHHHHhhh
Confidence 3566999999999999999999311112239999973 57999999999999977653
No 69
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.09 E-value=0.00038 Score=60.99 Aligned_cols=52 Identities=25% Similarity=0.740 Sum_probs=40.8
Q ss_pred CCccccccccccC--CCcEEecCCCCCc-ccccccccCCCcccCCCCCccCccchhhh
Q 005228 329 GWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 329 ~~~eqn~CikC~k--dGqLL~Cs~~gCp-lavH~~Clg~s~~fDd~GnFyCP~C~Y~~ 383 (707)
+-.+...| .|++ .|.+|.|+.-.|+ -.+|-.|+|-.. ...|.||||.|..++
T Consensus 32 d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~--~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT--KPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSS--CCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCc--CCCCCEECcCccCcC
Confidence 33455678 7999 7999999944599 589999999655 346999999997543
No 70
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.09 E-value=0.00042 Score=61.23 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhcc
Q 005228 645 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 645 r~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
.+||.||++.|.+-+++|| .+|..|-..|...=...||-.|||++|-.+++
T Consensus 31 ~~WTkEETd~Lf~L~~~fd------lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFD------LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT------TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhC------CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 6999999999999999999 79999999875211257999999999977654
No 71
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.07 E-value=0.00024 Score=57.83 Aligned_cols=51 Identities=31% Similarity=0.772 Sum_probs=39.6
Q ss_pred CCccccccccccC--CCcEEecCCCCCc-ccccccccCCCcccCCCCCccCccchhh
Q 005228 329 GWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 329 ~~~eqn~CikC~k--dGqLL~Cs~~gCp-lavH~~Clg~s~~fDd~GnFyCP~C~Y~ 382 (707)
+-.+...| .|++ .|.+|.|+.-.|| -.+|-.|+|-+.. ..|.||||.|.-+
T Consensus 7 d~~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~~--p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYK--PKGKWYCPKCRGD 60 (62)
T ss_dssp ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSC--CSSCCCCHHHHTC
T ss_pred CCCCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcCcC--CCCCEECcCcccC
Confidence 33455677 6999 8999999955599 7999999997653 5799999999654
No 72
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.06 E-value=0.00039 Score=58.36 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
+...||.||...|..+|.+|+ .+-..+|.+|-.. . +||..+++.+|..|.+.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p--~~t~~RW~~IA~~-----l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFP--GGTPGRWEKIAHE-----L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSC--TTCTTHHHHHHHH-----H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHH-----h-CCCHHHHHHHHHHHHHh
Confidence 456899999999999999998 3335789999986 2 69999999999999765
No 73
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.05 E-value=0.00032 Score=61.34 Aligned_cols=55 Identities=27% Similarity=0.686 Sum_probs=38.5
Q ss_pred CcccCCCCccccccccccC--CCcEEecCCCCCc-ccccccccCCCcccCCCCCccCcc-ch
Q 005228 323 DSLATSGWTEQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPF-CA 380 (707)
Q Consensus 323 d~~~~~~~~eqn~CikC~k--dGqLL~Cs~~gCp-lavH~~Clg~s~~fDd~GnFyCP~-C~ 380 (707)
+..+..+-.+...| .|+. .|.+|.|+.-.|| -.+|-.|+|-... ..|.||||. |.
T Consensus 16 ~~~~~~~~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~~--p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 16 DVTEGNNNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLKQA--PKGKWYCSKDCK 74 (90)
T ss_dssp --------CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCSSC--TTSCCCSSHHHH
T ss_pred CcCCCCCCCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCCcC--CCCCccCChhhc
Confidence 33334455566778 5997 6999999966699 5899999997653 459999999 84
No 74
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.04 E-value=0.00014 Score=64.30 Aligned_cols=47 Identities=26% Similarity=0.603 Sum_probs=37.9
Q ss_pred cccccccccC---------CCcEEecCCCCCcccccccccCCCccc---CCCCCccCccch
Q 005228 332 EQNLCVKCNK---------DGQLLSCSSSTCPLAVHENCLGFPVKF---DEKGNFHCPFCA 380 (707)
Q Consensus 332 eqn~CikC~k---------dGqLL~Cs~~gCplavH~~Clg~s~~f---Dd~GnFyCP~C~ 380 (707)
...+|..|.+ .|+||.|+ +|+.++|..|++..+.. -..++|+||.|.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4567888854 35899999 99999999999976533 247899999996
No 75
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=96.79 E-value=0.00026 Score=62.94 Aligned_cols=36 Identities=28% Similarity=0.658 Sum_probs=31.0
Q ss_pred CcEEecCCCCCcccccccccCCCcc---cCCCCCccCccch
Q 005228 343 GQLLSCSSSTCPLAVHENCLGFPVK---FDEKGNFHCPFCA 380 (707)
Q Consensus 343 GqLL~Cs~~gCplavH~~Clg~s~~---fDd~GnFyCP~C~ 380 (707)
|+||.|+ +||-++|..|++.++. .-.+|.|+||.|.
T Consensus 21 ~~Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 21 EELVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CCCeEeC--CCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 5899999 9999999999998854 2457899999994
No 76
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.38 E-value=0.0055 Score=52.03 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCCC
Q 005228 645 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSP 704 (707)
Q Consensus 645 r~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks~ 704 (707)
..||.+|..+|..++..|+ -+..++|..|-..- .+||.-+.+.+|.-|.+...
T Consensus 9 ~~WT~eE~k~fe~ALa~~~--~~tp~rWe~IA~~V-----~gKT~eE~~~hY~~l~~~~~ 61 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLP--KHKPGFWSEVAAAV-----GSRSPEECQRKYMENPRGKG 61 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSC--SSSSSHHHHHHHHT-----TTSCHHHHHHHHHHSSSSSC
T ss_pred CCCCHHHHHHHHHHHHHCC--CCCccHHHHHHHHc-----CCCCHHHHHHHHHHHHhccc
Confidence 4799999999999999998 33478999999863 57999999999999977653
No 77
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.16 E-value=0.0089 Score=56.82 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcC---------CCCCCCCCchhhHHHHHHhc
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGS---------SVFFSGRTAIDLKDKWRNMC 700 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~---------~vF~~~RT~VDLKDKWRNL~ 700 (707)
....||.+|...|+.||.||| .|+|..|..+.. +.|...++++.|+.+--.|.
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G-----~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll 194 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYG-----YGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLI 194 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHC-----TTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHC-----cCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHH
Confidence 346799999999999999999 899999997521 22335678889988854443
No 78
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=96.10 E-value=0.0032 Score=58.43 Aligned_cols=49 Identities=22% Similarity=0.560 Sum_probs=40.0
Q ss_pred cccccccccCC----CcEEecCCCCCcccccccccCCCcc-cCCCCCccCccchhhh
Q 005228 332 EQNLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPVK-FDEKGNFHCPFCAYTL 383 (707)
Q Consensus 332 eqn~CikC~kd----GqLL~Cs~~gCplavH~~Clg~s~~-fDd~GnFyCP~C~Y~~ 383 (707)
+...| .|+.. |.++.|+ +|+--+|..|+|.+.. .+..+.|+||.|.-..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECC--CCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 44567 78873 6699999 9999999999998765 4668999999997654
No 79
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.08 E-value=0.0026 Score=52.87 Aligned_cols=46 Identities=33% Similarity=0.956 Sum_probs=37.6
Q ss_pred cccccccccC--CCcEEecCCCCCc-ccccccccCCCcccCCCCCccCccch
Q 005228 332 EQNLCVKCNK--DGQLLSCSSSTCP-LAVHENCLGFPVKFDEKGNFHCPFCA 380 (707)
Q Consensus 332 eqn~CikC~k--dGqLL~Cs~~gCp-lavH~~Clg~s~~fDd~GnFyCP~C~ 380 (707)
+...|+ |++ .|.+|.|+.-.|| -.+|-.|+|-+.. ..|.||||.|.
T Consensus 5 ~~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~~--p~~~w~Cp~C~ 53 (70)
T 1x4i_A 5 SSGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEA--PKGKWYCPQCT 53 (70)
T ss_dssp CCCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHTCSSC--CSSCCCCHHHH
T ss_pred CCeEEE-cCCCCCCCEeEeCCCCCCccCCcccccccCcC--CCCCEECCCCC
Confidence 455677 886 6999999966687 6899999998764 57999999994
No 80
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.87 E-value=0.0069 Score=61.07 Aligned_cols=52 Identities=13% Similarity=0.385 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 641 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 641 RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
.+...+||.+|.+.+++|+++|| ..|..|-+. ..+||..+.|.-|.+..|+-
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG------KDW~~IAk~-----VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG------RDFQAISDV-----IGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS------SCHHHHHHH-----HSSCCHHHHHHHHHHTTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC------cCHHHHHHH-----cCCCCHHHHHHHHHHHHHHh
Confidence 45677999999999999999999 479999885 35899999999999887763
No 81
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.87 E-value=0.006 Score=51.05 Aligned_cols=51 Identities=25% Similarity=0.599 Sum_probs=41.5
Q ss_pred cccccccccCC---CcEEecCCCCCcccccccccCCCccc-----CCCCCccCccchhhh
Q 005228 332 EQNLCVKCNKD---GQLLSCSSSTCPLAVHENCLGFPVKF-----DEKGNFHCPFCAYTL 383 (707)
Q Consensus 332 eqn~CikC~kd---GqLL~Cs~~gCplavH~~Clg~s~~f-----Dd~GnFyCP~C~Y~~ 383 (707)
+.-.|+ |++. |..+.|....|..-+|-.|+|.+..- .....||||.|..++
T Consensus 15 ~~~~Ci-C~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRCV-CGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCS-SCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEeE-CCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 456785 8874 88899998899999999999998764 446899999997654
No 82
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.84 E-value=0.0049 Score=49.27 Aligned_cols=51 Identities=20% Similarity=0.599 Sum_probs=40.8
Q ss_pred cccccccccC----CCcEEecCCCCCcccccccccCCCcc-cCCCCCccCccchhhhh
Q 005228 332 EQNLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVK-FDEKGNFHCPFCAYTLS 384 (707)
Q Consensus 332 eqn~CikC~k----dGqLL~Cs~~gCplavH~~Clg~s~~-fDd~GnFyCP~C~Y~~a 384 (707)
+...|..|++ +|..+.|+ .|..-+|..|+|.+.. .+..+.|+||.|.-+++
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 4567888886 36688999 9999999999999875 34458999999976654
No 83
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.61 E-value=0.011 Score=52.54 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhcc
Q 005228 645 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 645 r~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
..||.||+..|.+-+++|+ .+|.-|...|...=...||-=|||++|-.+++
T Consensus 31 ~~WT~eETd~LfdLc~~fd------lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD------LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT------TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC------CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999 79999999875211258999999999966554
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.52 E-value=0.0037 Score=52.58 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHh----hcCCCCCccchhhhhhhcCC-CCCCCCCchhhHHHHHHhccCC
Q 005228 642 RKKVPWTAKEEEILKKGVQK----FASVDDRIIPWKKILEFGSS-VFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 642 RkRr~WT~EEeeAL~eGV~K----fGp~~d~~GkWkkILe~~~~-vF~~~RT~VDLKDKWRNL~Kks 703 (707)
++...||.+|+.+|+..... |.-..-....|..|-..... -| .||+.+.++||.||.+.-
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~--~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF--DRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHHH
Confidence 45678999999999999865 33111224589999864211 13 699999999999998764
No 85
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=95.48 E-value=0.0055 Score=54.24 Aligned_cols=54 Identities=20% Similarity=0.497 Sum_probs=43.3
Q ss_pred cccccccCC----CcEEecCCCCCcccccccccCCCccc------CCCCCccCccchhhhhHHHH
Q 005228 334 NLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPVKF------DEKGNFHCPFCAYTLSISEY 388 (707)
Q Consensus 334 n~CikC~kd----GqLL~Cs~~gCplavH~~Clg~s~~f------Dd~GnFyCP~C~Y~~a~~ey 388 (707)
..|..|.+. |..+.|+ .+|.--+|-.|+|-+..- +..+.|+||.|.-++.....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~~~ 67 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGS 67 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC--
T ss_pred CCCCCCCCccCCCCCEEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCCCC
Confidence 578999886 7899997 699999999999998632 56699999999877665443
No 86
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.02 E-value=0.011 Score=61.46 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhh-------hcCCCCCCCCCchhhHHHHHHhcc
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILE-------FGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe-------~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
+.+.||.+|...|+-++.+||- +..|.|..|.. +-++-|+..||++.|..+-..|.+
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~--~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGF--DKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCT--TSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcC--CCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 5569999999999999999991 22399999973 345567799999999999888765
No 87
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.97 E-value=0.061 Score=43.62 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=42.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCC
Q 005228 641 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGS 703 (707)
Q Consensus 641 RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks 703 (707)
+.+...||++|.+...+|+.+|| -.|..|... |...||..|+..-|-...|..
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yG------Kdf~~I~~~----~v~~Kt~~~~v~fYY~wKkt~ 58 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYG------KNFFRIRKE----LLPNKETGELITFYYYWKKTS 58 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTC------SCHHHHHHH----SCTTSCHHHHHHHHHHHHCSS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhC------ccHHHHHHH----HcCCCcHHHHHHHHhcccCCC
Confidence 33557999999999999999999 479999874 246899999998776555443
No 88
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=94.75 E-value=0.021 Score=46.59 Aligned_cols=51 Identities=25% Similarity=0.672 Sum_probs=38.6
Q ss_pred ccccccccC---CCcEEecCCCCCcccccccccCCCcccCCC----CCccCccchhhhh
Q 005228 333 QNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPVKFDEK----GNFHCPFCAYTLS 384 (707)
Q Consensus 333 qn~CikC~k---dGqLL~Cs~~gCplavH~~Clg~s~~fDd~----GnFyCP~C~Y~~a 384 (707)
.-.|| |+. +|..+.|.+..|..-+|-.|+|.+..-... ..||||.|..+++
T Consensus 10 ~v~C~-C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r~ 67 (68)
T 2rsd_A 10 KVRCI-CSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRA 67 (68)
T ss_dssp EECCT-TCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHHT
T ss_pred CEEeE-CCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCccc
Confidence 34575 865 488999995569999999999986543332 4799999987664
No 89
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.55 E-value=0.021 Score=46.91 Aligned_cols=47 Identities=26% Similarity=0.601 Sum_probs=37.5
Q ss_pred ccccccccCC---Cc-EEecCCCCCcccccccccCCCcccCCCCCccCccchhh
Q 005228 333 QNLCVKCNKD---GQ-LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 333 qn~CikC~kd---Gq-LL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~ 382 (707)
.-.|+ |+.. |. .|.|+ .|-.-+|..|+|....-...+.||||.|.-+
T Consensus 16 ~~~C~-C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDCK-CGTKDDDGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECCT-TCCCSCCSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEee-CCCccCCCCcEEECC--CCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 35686 8863 74 88898 8999999999999864445689999999643
No 90
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.08 E-value=0.099 Score=43.33 Aligned_cols=49 Identities=12% Similarity=0.273 Sum_probs=41.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHH
Q 005228 640 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRN 698 (707)
Q Consensus 640 ~RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRN 698 (707)
.|.....||++|.+...+|+.+|| -.|..|... |.+.||..|+..-|-.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG------Kdf~~I~~~----~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG------KDFNDIRQD----FLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC------SCHHHHHHT----TCSSSCHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC------ccHHHHHHH----HcCCCCHHHHHHHHHh
Confidence 356778999999999999999999 479999873 3478999999987763
No 91
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=93.88 E-value=0.045 Score=45.17 Aligned_cols=47 Identities=23% Similarity=0.545 Sum_probs=37.4
Q ss_pred ccccccccccCC--C-cEEecCCCCCcccccccccCCCcccCCCCCccCccchh
Q 005228 331 TEQNLCVKCNKD--G-QLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 381 (707)
Q Consensus 331 ~eqn~CikC~kd--G-qLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y 381 (707)
.+.-.| .|++. | ..|.|+ .|..-+|..|+|.+.. ...+.|+||.|.-
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCCTT-SCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECC--CCCccccccccCcCcc-cCCCcEECCCCCC
Confidence 345567 78874 4 488999 8999999999999886 4457999999953
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.79 E-value=0.11 Score=43.33 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=45.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhH---HHHHHhccC
Q 005228 640 LRRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLK---DKWRNMCKG 702 (707)
Q Consensus 640 ~RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLK---DKWRNL~Kk 702 (707)
.+++|.+||.|.-+..+++|..+|.+ ...|+.||+... -.+.|..++| .|||...++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~---~AtPk~Il~~M~---v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVE---RAVPKKILDLMN---VDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTT---TCCHHHHHHHHC---CTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCC---CCCcHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHc
Confidence 46788999999999999999999932 567999998754 2578888887 677776654
No 93
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.26 E-value=0.044 Score=58.42 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh-------cCCCCCCCCCchhhHHHHHHhccC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF-------GSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~-------~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
+.+.||.+|...|+-+|.+||- +..|.|..|... -++-|+..||++.|..+-..|.+.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~--~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGL--DRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcc--CCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 3458999999999999999992 223999999742 356667999999999999888753
No 94
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.68 E-value=0.077 Score=51.28 Aligned_cols=75 Identities=20% Similarity=0.459 Sum_probs=48.4
Q ss_pred cccccccCC---C----cEEecCCCCCcccccccccCCCcc----c---CCCCCccCccchhhhhHHHHHH-HHHHH-HH
Q 005228 334 NLCVKCNKD---G----QLLSCSSSTCPLAVHENCLGFPVK----F---DEKGNFHCPFCAYTLSISEYLE-AKKRA-SV 397 (707)
Q Consensus 334 n~CikC~kd---G----qLL~Cs~~gCplavH~~Clg~s~~----f---Dd~GnFyCP~C~Y~~a~~ey~e-aKk~a-~~ 397 (707)
+.|..|++. + ..+.|+ +|---+|..|+|-+.. + .+...|+||.|.-+.... +++ +..+. ..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECC--CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH-HHHHHHHHHHHH
Confidence 567777763 3 489999 9999999999998762 1 234689999998776543 332 12222 22
Q ss_pred HHHHHHHHhhccch
Q 005228 398 ARKELAAFMQMGSV 411 (707)
Q Consensus 398 AKK~L~~Fl~~~q~ 411 (707)
-++.|..++..+..
T Consensus 80 l~~vl~~L~~~~~s 93 (183)
T 3lqh_A 80 LKQVLTALLNSRTT 93 (183)
T ss_dssp HHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcccc
Confidence 35555555554443
No 95
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.64 E-value=0.06 Score=44.93 Aligned_cols=49 Identities=22% Similarity=0.623 Sum_probs=38.0
Q ss_pred cccccccccC----CCcEEecCCCCCcccccccccCCCccc-CCCCCccCccchhhh
Q 005228 332 EQNLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKF-DEKGNFHCPFCAYTL 383 (707)
Q Consensus 332 eqn~CikC~k----dGqLL~Cs~~gCplavH~~Clg~s~~f-Dd~GnFyCP~C~Y~~ 383 (707)
+...| .|++ +|..|.|+ .|..-+|..|+|.+..- +..+.|+||.|.-+.
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcC--CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 44556 6877 46789999 89999999999988753 335799999996543
No 96
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=91.85 E-value=0.23 Score=40.13 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC---CCccchhhhhhhcCCCCCCCCCchhhHHHHHHhcc
Q 005228 644 KVPWTAKEEEILKKGVQKFASVD---DRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCK 701 (707)
Q Consensus 644 Rr~WT~EEeeAL~eGV~KfGp~~---d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~K 701 (707)
|.+||.||..+|++=|.+|.+.+ .+..-|+.|-+.- .+.+|---.+|+|++-.+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~----~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS----LTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC----SSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH----CCCCCHHHHHHHHHHHcc
Confidence 67999999999999999994321 1356798887721 368999999999987554
No 97
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.83 E-value=0.17 Score=48.10 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=41.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHh
Q 005228 641 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNM 699 (707)
Q Consensus 641 RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL 699 (707)
|.....||..|...|+.|+.+|| +..+.|..|..... +.++|.-+|++=++.+
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG---~~~~r~~~I~~da~---L~~Ks~~~v~~y~~~f 56 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFG---GPLERLDAIARDAE---LVDKSETDLRRLGELV 56 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCS---SGGGCHHHHHHHTT---CTTSCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHC---CchhHHHHHHHHhc---cCCCCHHHHHHHHHHH
Confidence 45667999999999999999999 22478999999865 4789999999855544
No 98
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=91.64 E-value=0.056 Score=42.11 Aligned_cols=44 Identities=23% Similarity=0.635 Sum_probs=33.6
Q ss_pred cccccCC----CcEEecCCCCCcccccccccCCCcccCCCCCccCccch
Q 005228 336 CVKCNKD----GQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 380 (707)
Q Consensus 336 CikC~kd----GqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~ 380 (707)
|-.|++. +..+.|++ +|..=+|-.|+|.+..-.+.+.|+||.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCC-CCCccCcccccCCCccccCCCCEECCCCC
Confidence 4455553 44788886 89999999999998765445899999994
No 99
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.38 E-value=0.11 Score=53.14 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhh
Q 005228 645 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEF 678 (707)
Q Consensus 645 r~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~ 678 (707)
..|+.+|..+|+.||-+|| -|+|..|..+
T Consensus 169 c~W~~~dD~~LLvGIykyG-----yG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYG-----YGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHC-----TTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHc-----CCcHHHHhcC
Confidence 4699999999999999999 8999999975
No 100
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=90.25 E-value=0.35 Score=53.11 Aligned_cols=51 Identities=14% Similarity=0.375 Sum_probs=42.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 641 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 641 RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
.+..-+||.+|.+.+++||.+|| ..|..|-+.- ..||..+.|.-|.+..++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG------kdw~~IA~~V-----gTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG------RDFQAISDVI-----GNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT------TCHHHHHHHH-----SSCCHHHHHHHHHHTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC------cCHHHHHHHh-----CCCCHHHHHHHHHHHHHH
Confidence 35667999999999999999999 4899999863 479999999888765554
No 101
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.41 E-value=0.13 Score=42.50 Aligned_cols=46 Identities=22% Similarity=0.660 Sum_probs=36.5
Q ss_pred cccccccCC---CcEEecCCCCCcccccccccCCCcccC-----CCCCccCccchhh
Q 005228 334 NLCVKCNKD---GQLLSCSSSTCPLAVHENCLGFPVKFD-----EKGNFHCPFCAYT 382 (707)
Q Consensus 334 n~CikC~kd---GqLL~Cs~~gCplavH~~Clg~s~~fD-----d~GnFyCP~C~Y~ 382 (707)
-.| .|++. |..+.|. .|..-+|..|+|.+..-. ....|+||.|.-+
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 48875 5788898 899999999999987532 4689999999654
No 102
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=89.39 E-value=0.097 Score=42.97 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=37.6
Q ss_pred ccccccccccCC---Cc-EEecCCCCCcccccccccCCCccc------CCCCCccCccch
Q 005228 331 TEQNLCVKCNKD---GQ-LLSCSSSTCPLAVHENCLGFPVKF------DEKGNFHCPFCA 380 (707)
Q Consensus 331 ~eqn~CikC~kd---Gq-LL~Cs~~gCplavH~~Clg~s~~f------Dd~GnFyCP~C~ 380 (707)
.+...|..|.+. +. .+.|++ +|.-=+|-.|+|-+..- ...+.|+||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEeccc-CccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 345689999984 33 667774 99999999999999852 477899999993
No 103
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=88.47 E-value=0.3 Score=37.91 Aligned_cols=39 Identities=23% Similarity=0.596 Sum_probs=32.4
Q ss_pred ccCC---CcEEecCCCCCcccccccccCCCcccCCCCCccCccch
Q 005228 339 CNKD---GQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCA 380 (707)
Q Consensus 339 C~kd---GqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~ 380 (707)
|++. |..|.|+ .|..=+|..|+|.+.. ...+.|+||.|.
T Consensus 9 C~~~~~~~~MI~Cd--~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~ 50 (52)
T 3o7a_A 9 CMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCR 50 (52)
T ss_dssp TCCBCTTCCEEECT--TTCCEEETTTTTCCGG-GCCSSCCCHHHH
T ss_pred eCCcCCCCCEEEcC--CCCccccccccCCCcc-cCCCcEECcCCC
Confidence 6552 4789999 8999999999999886 445899999994
No 104
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=87.03 E-value=0.3 Score=41.94 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHH
Q 005228 644 KVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWR 697 (707)
Q Consensus 644 Rr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWR 697 (707)
-..||.+|..+|..++.+|+ .+..-+|.+|...- ++||.-+++..+.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp--~~tpdRWekIA~~V-----pGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTN--KDTPDRWKKVAQYV-----KGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSC--SSCCSSSTTTGGGS-----CSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHHc-----CCCCHHHHHHHHH
Confidence 34799999999999999997 33467999999853 5799999987764
No 105
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=86.63 E-value=0.9 Score=39.59 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=38.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHH
Q 005228 641 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWR 697 (707)
Q Consensus 641 RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWR 697 (707)
|.....||++|.+...+|+..|| .+|..|.. |.+.||..++-.=|-
T Consensus 40 r~~~~~WT~eE~~~F~~~~~~~g------K~F~~Ia~-----~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 40 RQVMNMWSEQEKETFREKFMQHP------KNFGLIAS-----FLERKTVAECVLYYY 85 (94)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHST------TCHHHHHH-----TCTTCCHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHcC------CCHHHHHH-----HcCCCCHHHHHHHHh
Confidence 44567999999999999999999 68999955 357999999875554
No 106
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=86.53 E-value=0.22 Score=41.28 Aligned_cols=43 Identities=26% Similarity=0.647 Sum_probs=33.6
Q ss_pred cccC----CCcEEecCCCCCcccccccccCCCccc-CCCCCccCccchhh
Q 005228 338 KCNK----DGQLLSCSSSTCPLAVHENCLGFPVKF-DEKGNFHCPFCAYT 382 (707)
Q Consensus 338 kC~k----dGqLL~Cs~~gCplavH~~Clg~s~~f-Dd~GnFyCP~C~Y~ 382 (707)
-|+. +|..|.|. .|..-+|..|+|.+..- .....|+||.|.-+
T Consensus 14 iC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp TTTEECCTTSCEEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred ECCCcCCCCCCEEEcC--CCCCCEecccccccccccCCCCEEECCCCccc
Confidence 4665 36799999 89999999999988653 23368999999543
No 107
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=86.15 E-value=0.4 Score=53.19 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=28.7
Q ss_pred EEecCCCCCcccccccccCCCccc-CCCCCccCccch
Q 005228 345 LLSCSSSTCPLAVHENCLGFPVKF-DEKGNFHCPFCA 380 (707)
Q Consensus 345 LL~Cs~~gCplavH~~Clg~s~~f-Dd~GnFyCP~C~ 380 (707)
.+.|+ +|.-=+|-.|+|.+..- +..+.||||.|.
T Consensus 58 mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~ 92 (528)
T 3pur_A 58 WIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPKCV 92 (528)
T ss_dssp EEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTTTH
T ss_pred EEECC--CCCcCCCCcCCCCChhHhcCCCeEECcCCc
Confidence 56777 99999999999998865 445899999994
No 108
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=82.45 E-value=0.31 Score=53.17 Aligned_cols=45 Identities=27% Similarity=0.733 Sum_probs=36.1
Q ss_pred cccccccC----CCcEEecCCCCCcccccccccCCCccc-CCCCCccCccchh
Q 005228 334 NLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKF-DEKGNFHCPFCAY 381 (707)
Q Consensus 334 n~CikC~k----dGqLL~Cs~~gCplavH~~Clg~s~~f-Dd~GnFyCP~C~Y 381 (707)
-.| .|++ +|..+.|+ .|.-=+|-.|+|-+..- +..+.||||.|.-
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp EET-TTTEECCTTSCEEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEcc--CCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 345 6776 47789999 89999999999998764 3457899999954
No 109
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=81.86 E-value=1.8 Score=44.20 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhc
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMC 700 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~ 700 (707)
++..||..|...|+++|.|||. -.++|..|..+.. +..+...+|+.=+..|.
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~---~~~R~e~I~~dA~---L~~ks~~~i~~~~~~li 53 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGN---LKEILDELIADGT---LPVKSFEKYGETYDEMM 53 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSS---CTTCHHHHHHTTS---SCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHhcc---cccCCHHHHHHHHHHHH
Confidence 4578999999999999999992 2679999999876 57899999998877664
No 110
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=78.65 E-value=1.2 Score=38.88 Aligned_cols=34 Identities=29% Similarity=0.693 Sum_probs=28.0
Q ss_pred EEecCCCCCcccccccccCCCcc----cCCCCCccCccch
Q 005228 345 LLSCSSSTCPLAVHENCLGFPVK----FDEKGNFHCPFCA 380 (707)
Q Consensus 345 LL~Cs~~gCplavH~~Clg~s~~----fDd~GnFyCP~C~ 380 (707)
||.|+ .|.-.+|..|++.... -+..+.|.||.|.
T Consensus 75 m~~C~--~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~ 112 (117)
T 4bbq_A 75 LMECC--ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCY 112 (117)
T ss_dssp CEEET--TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC
T ss_pred eEEee--ecCCeEECCCCCCCccccccccCCCCeECCCCc
Confidence 89999 9999999999997643 2334669999994
No 111
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=76.81 E-value=0.5 Score=41.76 Aligned_cols=46 Identities=22% Similarity=0.688 Sum_probs=38.3
Q ss_pred ccccccccc--CCCcEEecCCCCCcccccccccCCC------------cccCCCCCccCccc
Q 005228 332 EQNLCVKCN--KDGQLLSCSSSTCPLAVHENCLGFP------------VKFDEKGNFHCPFC 379 (707)
Q Consensus 332 eqn~CikC~--kdGqLL~Cs~~gCplavH~~Clg~s------------~~fDd~GnFyCP~C 379 (707)
....|--|+ ..+.|+-|- .|.-++|..||-.. ..-+-.+-|+||+|
T Consensus 14 ~D~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C 73 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 73 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred CCcccCccccccccceeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCcccccc
Confidence 347899999 778899999 99999999998664 33456789999999
No 112
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=76.47 E-value=0.64 Score=39.64 Aligned_cols=56 Identities=13% Similarity=0.244 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccCCCCCC
Q 005228 643 KKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKGSPRSK 707 (707)
Q Consensus 643 kRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kks~k~~ 707 (707)
.-..||.||...++...++-||. .--|+.|-.. + +||.-+++.+++-|.+.-.|||
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s---~~tfa~iA~~-----L-nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPS---SKTFAYLAAK-----L-DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 45689999999999999999953 3578777753 3 7999999999999999877765
No 113
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=71.96 E-value=0.7 Score=50.06 Aligned_cols=47 Identities=21% Similarity=0.536 Sum_probs=36.5
Q ss_pred cccccC----CCcEEecCCCCCcccccccccCCCcccCC-CCCccCccchhhhh
Q 005228 336 CVKCNK----DGQLLSCSSSTCPLAVHENCLGFPVKFDE-KGNFHCPFCAYTLS 384 (707)
Q Consensus 336 CikC~k----dGqLL~Cs~~gCplavH~~Clg~s~~fDd-~GnFyCP~C~Y~~a 384 (707)
+..|++ +|..+.|+ .|.-=+|-.|+|-+..--+ .+.|+||.|.-+..
T Consensus 7 yCiC~~~~d~~~~MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECD--MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp ETTTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred EEeCCCcCCCCCCeEEcC--CCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 345665 47789999 8999999999999876433 37899999975543
No 114
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=70.04 E-value=4.2 Score=36.38 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 641 RRKKVPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 641 RRkRr~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
-.+-.-||.||...++...++-|+. .-.|+.|-.. +.+|+.-+++.+++-|.|.
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s---~~tFa~iA~~-----L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQ---PHTFSVISQQ-----LGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSC---TTTHHHHHHH-----HSSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCC---hhHHHHHHHH-----HccCCHHHHHHHHHHHHHH
Confidence 4466799999999999999999954 5589998875 3579999999999988763
No 115
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=68.59 E-value=5.8 Score=40.50 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=23.5
Q ss_pred cchhhhhhhcCCCCCCCCCchhhHHHHHHhccC
Q 005228 670 IPWKKILEFGSSVFFSGRTAIDLKDKWRNMCKG 702 (707)
Q Consensus 670 GkWkkILe~~~~vF~~~RT~VDLKDKWRNL~Kk 702 (707)
+.|+.|-+.+ +.||.+-.+|+||.+++.
T Consensus 172 ~~fk~ia~~~-----P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 172 EFFKHFAEEH-----AAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp THHHHHHHHT-----TTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHC-----CCCChhhHHHHHHHHHhh
Confidence 3699999864 589999999999988754
No 116
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=67.32 E-value=3.1 Score=34.31 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=34.4
Q ss_pred CCccccccccccCC--CcEEecCCCCCcccccccccCCC---------cccCCCCCccCccchhhh
Q 005228 329 GWTEQNLCVKCNKD--GQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 329 ~~~eqn~CikC~kd--GqLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y~~ 383 (707)
.......|..|++. |+.|.-. + ..+|..||-+. .-|...|.+||..|++.+
T Consensus 21 ~~~~~~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 82 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGAVVKAR--D--KYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARAR 82 (89)
T ss_dssp CCCSCCBCTTTCCBCCSCCEESS--S--CEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHH
T ss_pred CCCcCCCcccCCCEecccEEEEC--C--ceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence 44566789999985 5555433 3 56888887653 234456889999997543
No 117
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=66.41 E-value=3.1 Score=37.30 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=34.2
Q ss_pred cccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccC
Q 005228 334 NLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHC 376 (707)
Q Consensus 334 n~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyC 376 (707)
=+|..|++... +.|. -||.++|..|+.-.......+.|+|
T Consensus 59 c~C~~C~k~~~-~~C~--~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 59 HQCDECSSAAV-SFCE--FCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp GBCTTTCSBCC-EECS--SSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCCCcCCCCCC-cCcC--CCCcchhhhccCCcceecCCCCcee
Confidence 36888998876 7899 9999999999999998777777765
No 118
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.76 E-value=4.1 Score=33.38 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=34.8
Q ss_pred cccCCCCccccccccccC---CCcEEecCCCCCcccccccccCCC--------cccCCCCCccCccchhhh
Q 005228 324 SLATSGWTEQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFP--------VKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 324 ~~~~~~~~eqn~CikC~k---dGqLL~Cs~~gCplavH~~Clg~s--------~~fDd~GnFyCP~C~Y~~ 383 (707)
+..+..+.....|..|++ +|++|.-- + -.+|..||-+. .-|...|.+||..|+.++
T Consensus 6 ~~~~~~~~~~~~C~~C~~~I~~~~~v~a~--~--~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~ 72 (80)
T 2dj7_A 6 SGKPIKIRGPSHCAGCKEEIKHGQSLLAL--D--KQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQ 72 (80)
T ss_dssp CCCCCCCSSCSCCTTTCCCCSSSCCEEET--T--EEECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHHH
T ss_pred CCCCcCCCCCCCCcCcCCeeCCCeEEEEC--C--cccccccCCcCcCCCCcCCCeEEECCEEECHHHHHHH
Confidence 334555677789999998 47755332 1 34555555431 125567899999996543
No 119
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=61.53 E-value=2.3 Score=40.80 Aligned_cols=75 Identities=17% Similarity=0.384 Sum_probs=52.6
Q ss_pred cccccchhhh---hhhcccchhhhcCCCcccCCCCccccccccccCCCcEEecCCCCCcccccccccCCC------cccC
Q 005228 299 YHNDRIDVAV---KKSHFLSSQAALGHDSLATSGWTEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFP------VKFD 369 (707)
Q Consensus 299 Yh~e~~d~~~---~k~~fLsS~~~~~~d~~~~~~~~eqn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s------~~fD 369 (707)
+.|-...+.+ =|..|++..++.+.|- -|.-|--|+.+|+||.|+...|+-++=.+|+..- ....
T Consensus 49 ~~HPlf~v~lC~~Ck~~y~e~~f~~DeDG-------~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~ 121 (159)
T 3a1b_A 49 LEHPLFVGGMCQNCKNCFLECAYQYDDDG-------YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAI 121 (159)
T ss_dssp EECSSBSSEECHHHHHHHHHHTTCBCTTS-------SBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHH
T ss_pred ccCCCccchhhHHHHHHHhhcccccCCCC-------CcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHh
Confidence 4444444443 2556666665555444 2568999999999999999999999999997321 1224
Q ss_pred CCCCccCccch
Q 005228 370 EKGNFHCPFCA 380 (707)
Q Consensus 370 d~GnFyCP~C~ 380 (707)
.+..|.|=.|.
T Consensus 122 ~~d~W~Cy~C~ 132 (159)
T 3a1b_A 122 KEDPWNCYMCG 132 (159)
T ss_dssp TSSSCCCTTTC
T ss_pred ccCCCEEEecC
Confidence 58899998884
No 120
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=60.90 E-value=4.7 Score=34.16 Aligned_cols=31 Identities=32% Similarity=0.865 Sum_probs=24.0
Q ss_pred ccccccccccCCCcEEecCCCCCcccccccccCCCcccCCCCCccCccchh
Q 005228 331 TEQNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAY 381 (707)
Q Consensus 331 ~eqn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y 381 (707)
-+..-|+-|+.+.. |.|- || .|+.||+-||.
T Consensus 6 ee~pWC~ICneDAt-lrC~--gC-----------------dgDLYC~rC~r 36 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCA--GC-----------------DGDLYCARCFR 36 (67)
T ss_dssp CCCSSCTTTCSCCC-EEET--TT-----------------TSEEECSSHHH
T ss_pred cCCCeeEEeCCCCe-EEec--CC-----------------CCceehHHHHH
Confidence 34567999999966 6777 65 47899999975
No 121
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.35 E-value=6 Score=31.87 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=34.8
Q ss_pred CccccccccccCC--CcEEecCCCCCcccccccccCCC---------cccCCCCCccCccchhh
Q 005228 330 WTEQNLCVKCNKD--GQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 330 ~~eqn~CikC~kd--GqLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y~ 382 (707)
......|-.|++. |+.|.-. + -.+|..||-+. .-|...|.+||..|+..
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 71 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGVFVKLR--D--RHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARE 71 (79)
T ss_dssp CCCCCCCSSSCCCCCSSCEECS--S--CEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHH
T ss_pred CCCCCccccCCCCccCcEEEEC--c--ceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHH
Confidence 4556899999986 6655443 2 56788888764 23566789999999754
No 122
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.20 E-value=3.8 Score=32.45 Aligned_cols=52 Identities=13% Similarity=0.283 Sum_probs=34.4
Q ss_pred CCCCccccccccccCC----CcEEecCCCCCcccccccccCCCc---------ccCCCCCccCccchhh
Q 005228 327 TSGWTEQNLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPV---------KFDEKGNFHCPFCAYT 382 (707)
Q Consensus 327 ~~~~~eqn~CikC~kd----GqLL~Cs~~gCplavH~~Clg~s~---------~fDd~GnFyCP~C~Y~ 382 (707)
+.+......|..|++. ++++.-. | -.+|..||-+.. -|...|.+||..|+.+
T Consensus 5 ~~~~~~~~~C~~C~~~I~~~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 69 (77)
T 1g47_A 5 MANALASATCERCKGGFAPAEKIVNSN--G--ELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM 69 (77)
T ss_dssp CCSCCCCCBCSSSCCBCCSTTTCEEET--T--EEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHH
T ss_pred hccCCCCCCchhcCCccCCCceEEEeC--c--cEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHH
Confidence 3444556899999983 5555443 2 367888877642 2566788899988654
No 123
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.03 E-value=7.5 Score=31.76 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=35.5
Q ss_pred CCCCccccccccccC---CCcEEecCCCCCcccccccccCCCc--------c-c--CCCCCccCccchhhh
Q 005228 327 TSGWTEQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPV--------K-F--DEKGNFHCPFCAYTL 383 (707)
Q Consensus 327 ~~~~~eqn~CikC~k---dGqLL~Cs~~gCplavH~~Clg~s~--------~-f--Dd~GnFyCP~C~Y~~ 383 (707)
+..+.....|..|++ ++++|.-. + -.+|..||-+.. . + ...|.+||..|+...
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~e~v~a~--~--~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 9 HQEAGAGDLCALCGEHLYVLERLCVN--G--HFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp CCCCCSSCBCSSSCCBCCTTTBCCBT--T--BCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred CcCCCCCCCCcccCCCcccceEEEEC--C--CeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 344556789999998 46666533 2 467888876642 1 1 357899999997643
No 124
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=55.53 E-value=8.6 Score=34.16 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=31.1
Q ss_pred CccccccccccCC---CcEEecCCCCCcccccccccCC---C--------cccCCCCCccCccchhhh
Q 005228 330 WTEQNLCVKCNKD---GQLLSCSSSTCPLAVHENCLGF---P--------VKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 330 ~~eqn~CikC~kd---GqLL~Cs~~gCplavH~~Clg~---s--------~~fDd~GnFyCP~C~Y~~ 383 (707)
......|..|++. +.+|.-- --.+|..||-+ . .-|...|..||..|.+++
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~----~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~ 121 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAM----DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 121 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEET----TEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHH
T ss_pred CccCCcCcCCCCCcCCcEEEEeC----CcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhh
Confidence 4446899999984 3334322 23567766654 1 235567889999997653
No 125
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.11 E-value=2.6 Score=35.30 Aligned_cols=55 Identities=25% Similarity=0.565 Sum_probs=37.2
Q ss_pred CCccccccccccCCC----cE-EecCCCCCcccccccccCCCcccCCCCCccCccchhhhhH
Q 005228 329 GWTEQNLCVKCNKDG----QL-LSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLSI 385 (707)
Q Consensus 329 ~~~eqn~CikC~kdG----qL-L~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~~a~ 385 (707)
...++..|.-|-.++ .| +-|.-.|.--.+|..||..-.. .+++..||+|.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~--~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIK--SSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHH--HHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHh--hCCCCCCCCCCCeeec
Confidence 344567899997543 33 3354445568999999965443 3467899999887654
No 126
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=50.12 E-value=3.3 Score=44.42 Aligned_cols=50 Identities=26% Similarity=0.560 Sum_probs=40.4
Q ss_pred ccccccccCCCcEEecCCCCCcccccccccCCCc------ccCCCCCccCccchhh
Q 005228 333 QNLCVKCNKDGQLLSCSSSTCPLAVHENCLGFPV------KFDEKGNFHCPFCAYT 382 (707)
Q Consensus 333 qn~CikC~kdGqLL~Cs~~gCplavH~~Clg~s~------~fDd~GnFyCP~C~Y~ 382 (707)
+.-|--|+.+|+||.|+...|+-++=.+|+..-. .......|.|=.|.=+
T Consensus 93 ~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 5689999999999999999999999899974332 3345688999888643
No 127
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=49.58 E-value=6.6 Score=33.72 Aligned_cols=30 Identities=27% Similarity=0.718 Sum_probs=26.8
Q ss_pred ccccccccCC--CcEEecCCCCCccccccccc
Q 005228 333 QNLCVKCNKD--GQLLSCSSSTCPLAVHENCL 362 (707)
Q Consensus 333 qn~CikC~kd--GqLL~Cs~~gCplavH~~Cl 362 (707)
.-.|.-|+.. |--+.|+...|..++|..|.
T Consensus 17 ~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 17 KLTCYLCKQKGVGASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp CCCBTTTTBCCSSCEEECSCTTTCCEEEHHHH
T ss_pred cCCCcCCCCCCCcEeEecCCCCCCCcCcHHHH
Confidence 4689999864 89999999999999999995
No 128
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=49.23 E-value=5.2 Score=32.20 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=31.5
Q ss_pred cccccccccC---CCcEEecCCCCCcccccccccCCC---------cccCCCCCccCccchhhh
Q 005228 332 EQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 332 eqn~CikC~k---dGqLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y~~ 383 (707)
....|..|++ .|++|.-. + -.+|..||-+. .-|...|..||..|+.++
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 65 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCD--G--RSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKK 65 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEET--T--EEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHH
T ss_pred CCCcCcCcCccccCceeEEeC--C--cccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHH
Confidence 3478999998 57766544 2 46777776543 234557889999997654
No 129
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=48.21 E-value=12 Score=36.37 Aligned_cols=42 Identities=24% Similarity=0.502 Sum_probs=30.2
Q ss_pred cccCCCc----EEecCCCCCcccccccccCCCc----ccCCCCCccCccchh
Q 005228 338 KCNKDGQ----LLSCSSSTCPLAVHENCLGFPV----KFDEKGNFHCPFCAY 381 (707)
Q Consensus 338 kC~kdGq----LL~Cs~~gCplavH~~Clg~s~----~fDd~GnFyCP~C~Y 381 (707)
-||++|+ -|.|+ .|-=-+|..|+.... .||--=.|.|-.|.=
T Consensus 9 YCG~~~~~~~~mLqC~--~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 9 DEENGRQLGEVELQCG--ICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp --CTTCCTTSCEEECT--TTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred EcCCCCCCCceeEeec--cccceecHHHhcccccCccccceeEEEEccccCC
Confidence 4899888 79999 899999999998654 233333356999954
No 130
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.58 E-value=11 Score=30.94 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=31.1
Q ss_pred cccccccccCC--CcEEecCCCCCcccccccccCCC---------cccCCCCCccCccchhh
Q 005228 332 EQNLCVKCNKD--GQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 332 eqn~CikC~kd--GqLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y~ 382 (707)
....|..|++. |+.|.-. | -.+|..||-+. .-|...|..||..|+.+
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~--~--~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 81 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVAL--G--KSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEK 81 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEET--T--EEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHH
T ss_pred CCCCCccCCCEecceEEEEC--C--ccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHH
Confidence 45789999885 5555433 2 46777776553 22456789999999754
No 131
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.81 E-value=24 Score=29.00 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=31.7
Q ss_pred ccccccccccCC---CcEEecCCCCCcccccccccCCC---------cccCCCCCccCccchh
Q 005228 331 TEQNLCVKCNKD---GQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAY 381 (707)
Q Consensus 331 ~eqn~CikC~kd---GqLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y 381 (707)
.....|..|++. +++|.-. + ..+|..||-+. .-|...|.+||..|+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 71 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLAN--Q--QVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFN 71 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECS--S--SEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHH
T ss_pred CCCCcCccCCCccCCceeEEEC--C--CEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHH
Confidence 346789999985 4665422 2 46788887664 2455668899988854
No 132
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.47 E-value=9.3 Score=29.79 Aligned_cols=48 Identities=17% Similarity=0.427 Sum_probs=29.4
Q ss_pred ccccccccccCC--CcEEecCCCCCcccccccccCCCc---------ccCCCCCccCccchhh
Q 005228 331 TEQNLCVKCNKD--GQLLSCSSSTCPLAVHENCLGFPV---------KFDEKGNFHCPFCAYT 382 (707)
Q Consensus 331 ~eqn~CikC~kd--GqLL~Cs~~gCplavH~~Clg~s~---------~fDd~GnFyCP~C~Y~ 382 (707)
.....|-.|++. |+.|.-. --.+|..||-+.. -|...|.+||..|..+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 61 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGRVIKAM----NNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNR 61 (70)
T ss_dssp CCSSBCSSSCCBCCSCCEEET----TEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CCCCcCccCCCEecceEEEEC----cccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhh
Confidence 345678888874 5544322 1356777776532 2335788899998654
No 133
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=37.98 E-value=11 Score=32.16 Aligned_cols=33 Identities=24% Similarity=0.676 Sum_probs=27.1
Q ss_pred EEecCCCCCcccccccccCCCc-------ccCCCCCccCccc
Q 005228 345 LLSCSSSTCPLAVHENCLGFPV-------KFDEKGNFHCPFC 379 (707)
Q Consensus 345 LL~Cs~~gCplavH~~Clg~s~-------~fDd~GnFyCP~C 379 (707)
.+.|+ .|---+|.+|++.+. .+-++-.|.||.|
T Consensus 2 mi~c~--~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C 41 (140)
T 2ku7_A 2 MMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNC 41 (140)
T ss_dssp CCCCS--CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCC
T ss_pred ccccc--cCCCccCCcccccCHHHHHHHhhccccceeeCccc
Confidence 36788 999999999999874 3345778999999
No 134
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=33.91 E-value=16 Score=29.48 Aligned_cols=30 Identities=33% Similarity=0.779 Sum_probs=24.4
Q ss_pred ccccccccCC---C-cEEecCCCCCcccccccccCC
Q 005228 333 QNLCVKCNKD---G-QLLSCSSSTCPLAVHENCLGF 364 (707)
Q Consensus 333 qn~CikC~kd---G-qLL~Cs~~gCplavH~~Clg~ 364 (707)
-..|..|++. | |-|.|. .|.+.+|.+|-..
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~--dC~~~cH~~C~~~ 52 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCR--DCRVVSHPECRDR 52 (61)
T ss_dssp CEECTTTCCEECTTCEEEEES--SSSCEECGGGGGG
T ss_pred CcccccccCEEEEeeEeeECC--CCCCeEchhHhhc
Confidence 3678888764 4 679999 9999999999643
No 135
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.14 E-value=27 Score=27.01 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=26.9
Q ss_pred ccccccccCC--CcEEecCCCCCcccccccccCCC---------cccCCCCCccCccchhh
Q 005228 333 QNLCVKCNKD--GQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 333 qn~CikC~kd--GqLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y~ 382 (707)
...|..|++. ++.|.-. --.+|..||-+. .-|...|..||..|+.+
T Consensus 5 ~~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYR----EQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61 (70)
T ss_dssp CCBCSSSCCBCCSSEEESS----SSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHH
T ss_pred CCCCcccCCeeccceEEEC----ccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHH
Confidence 4578888774 4433322 135676665543 22355688899988643
No 136
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=31.92 E-value=21 Score=26.60 Aligned_cols=31 Identities=32% Similarity=0.719 Sum_probs=25.0
Q ss_pred cccccccCC--C---cEEecCCCCCcccccccccCCCc
Q 005228 334 NLCVKCNKD--G---QLLSCSSSTCPLAVHENCLGFPV 366 (707)
Q Consensus 334 n~CikC~kd--G---qLL~Cs~~gCplavH~~Clg~s~ 366 (707)
..|-.|++- | |=|.|. .|-+.+|.+|...-|
T Consensus 12 t~C~~C~~~l~g~~~qg~~C~--~C~~~~H~~C~~~v~ 47 (50)
T 1ptq_A 12 TFCDHCGSLLWGLVKQGLKCE--DCGMNVHHKCREKVA 47 (50)
T ss_dssp CBCTTTCCBCCSSSSCEEEET--TTCCEECHHHHTTSC
T ss_pred CCcCCCCceeeccCCccCEeC--CCCCeECHHHhhhcC
Confidence 568888763 4 779999 999999999987654
No 137
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.37 E-value=22 Score=27.73 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=28.7
Q ss_pred cccccccccCC----CcEEecCCCCCcccccccccCCC---------cccCCCCCccCccchhh
Q 005228 332 EQNLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 332 eqn~CikC~kd----GqLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y~ 382 (707)
....|..|++. ++++.-. + -.+|..||-+. .-|...|.+||..|+.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVAL--D--RVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVA 63 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECS--S--SEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHH
T ss_pred CCCCCccCCCccCCCceEEEEC--C--CeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHH
Confidence 34678888873 3444433 2 35677766542 23455688999999643
No 138
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.19 E-value=13 Score=28.86 Aligned_cols=46 Identities=22% Similarity=0.395 Sum_probs=28.7
Q ss_pred ccccccccCC----CcEEecCCCCCcccccccccCCCc---------ccCCCCCccCccchhh
Q 005228 333 QNLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPV---------KFDEKGNFHCPFCAYT 382 (707)
Q Consensus 333 qn~CikC~kd----GqLL~Cs~~gCplavH~~Clg~s~---------~fDd~GnFyCP~C~Y~ 382 (707)
...|..|++. +++|.-. | -.+|..||-+.. -|...|..||..|+.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYG--G--QTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECST--T--CCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHH
T ss_pred CCCCccCCCccccCccEEEEC--c--cccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHH
Confidence 3578888874 3555433 2 367877776542 2344678888888643
No 139
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.63 E-value=13 Score=30.21 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=29.5
Q ss_pred cccccccccCC--CcEEecCCCCCcccccccccCCCc--------ccCCCCCccCccchhh
Q 005228 332 EQNLCVKCNKD--GQLLSCSSSTCPLAVHENCLGFPV--------KFDEKGNFHCPFCAYT 382 (707)
Q Consensus 332 eqn~CikC~kd--GqLL~Cs~~gCplavH~~Clg~s~--------~fDd~GnFyCP~C~Y~ 382 (707)
....|..|++. |+.|.-. --.+|..||-+.. .|.-.|..||..|+.+
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~ 70 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFK----NDPYHPDHFNCANCGKELTADARELKGELYCLPCHDK 70 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCS----SSCCCTTTSBCSSSCCBCCTTCEEETTEEECHHHHHT
T ss_pred CCCCCccCCCEecceEEEEC----cceeCCCCCEeCCCCCccCCCCEeECCEEeCHHHHHH
Confidence 45689999874 4433221 2356777765432 3666789999999654
No 140
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.47 E-value=27 Score=27.29 Aligned_cols=46 Identities=22% Similarity=0.548 Sum_probs=27.1
Q ss_pred ccccccccCC--C----cEEecCCCCCcccccccccCCC---------cccCCCCCccCccchhh
Q 005228 333 QNLCVKCNKD--G----QLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 333 qn~CikC~kd--G----qLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y~ 382 (707)
...|..|++. | ++|.-- --.+|..||-+. .-+...|..||..|..+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFE----ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKD 65 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECS----SCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHT
T ss_pred CCCCcCCCccccCCCCcceEEEC----CcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCc
Confidence 4678888873 2 444322 135666665543 12346788899988654
No 141
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=30.13 E-value=11 Score=41.61 Aligned_cols=38 Identities=11% Similarity=0.357 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCccchhhhhhhcCCCCCCCCCchhhH
Q 005228 645 VPWTAKEEEILKKGVQKFASVDDRIIPWKKILEFGSSVFFSGRTAIDLK 693 (707)
Q Consensus 645 r~WT~EEeeAL~eGV~KfGp~~d~~GkWkkILe~~~~vF~~~RT~VDLK 693 (707)
..||.+|...+.+||.+|| ..|..|.. |++.||.-+|-
T Consensus 190 d~WT~eE~~lFe~al~~yG------KdF~~I~~-----~lp~Ksv~e~V 227 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHG------KTFHRIQQ-----MLPDKSIASLV 227 (482)
T ss_dssp -------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcC------ccHHHHHH-----HcCCCCHHHHH
Confidence 4899999999999999999 67888875 34566666654
No 142
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=28.94 E-value=2.4 Score=33.76 Aligned_cols=51 Identities=24% Similarity=0.548 Sum_probs=33.2
Q ss_pred cccccccccCC-C-c-EEecCCCCCcccccccccCCCcccCCCCCccCccchhhhh
Q 005228 332 EQNLCVKCNKD-G-Q-LLSCSSSTCPLAVHENCLGFPVKFDEKGNFHCPFCAYTLS 384 (707)
Q Consensus 332 eqn~CikC~kd-G-q-LL~Cs~~gCplavH~~Clg~s~~fDd~GnFyCP~C~Y~~a 384 (707)
+...|.-|-.+ | . ++-|.=.|.--.||..||-.=. +.+|+..||+|.+...
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~--~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWL--TISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHH--HHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHH--HhCCCCccCCCCCeee
Confidence 34567777433 2 2 3444433656699999997554 4467899999987643
No 143
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.76 E-value=36 Score=26.86 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=30.7
Q ss_pred cccccccccCC---CcEEecCCCCCcccccccccCCC---------cccCCCCCccCc-cchhh
Q 005228 332 EQNLCVKCNKD---GQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCP-FCAYT 382 (707)
Q Consensus 332 eqn~CikC~kd---GqLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP-~C~Y~ 382 (707)
....|..|++. |++|.-. --.+|..||-+. .-|...|..||. .|+.+
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSL----GKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEET----TEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHH
T ss_pred CCCCCcCCCCEeECCeEEEEC----CeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHH
Confidence 34689999983 6666533 246787776543 234556889999 79654
No 144
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.69 E-value=23 Score=28.21 Aligned_cols=20 Identities=20% Similarity=0.674 Sum_probs=15.7
Q ss_pred CCCcccCCCCCccCccchhh
Q 005228 363 GFPVKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 363 g~s~~fDd~GnFyCP~C~Y~ 382 (707)
|++...++.|.|.||.|.|.
T Consensus 1 ~~s~~~~~~~~W~C~~CT~~ 20 (53)
T 2d9g_A 1 GSSGSSGDEGYWDCSVCTFR 20 (53)
T ss_dssp CCCCCSSCCCCEECSSSCCE
T ss_pred CCCCCCCCCCCcCCCCCccC
Confidence 35566778899999999774
No 145
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=26.38 E-value=18 Score=33.73 Aligned_cols=49 Identities=20% Similarity=0.420 Sum_probs=33.5
Q ss_pred CccccccccccC---CCcEEecCCCCCcccccccccCCCc---------ccCCCCCccCccchhh
Q 005228 330 WTEQNLCVKCNK---DGQLLSCSSSTCPLAVHENCLGFPV---------KFDEKGNFHCPFCAYT 382 (707)
Q Consensus 330 ~~eqn~CikC~k---dGqLL~Cs~~gCplavH~~Clg~s~---------~fDd~GnFyCP~C~Y~ 382 (707)
+.....|..|++ .|+.|.-. | -.+|..||-+.. -|...|..||..|+..
T Consensus 4 ~~~~~~C~~C~~~I~~~~~v~a~--g--~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 64 (192)
T 1b8t_A 4 WGGGKKCGVCQKAVYFAEEVQCE--G--SSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGK 64 (192)
T ss_dssp CCCCEECTTTCCEECSSCCEEET--T--EEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHH
T ss_pred CCCCCcCccCCCeecceeEEEeC--C--ceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHh
Confidence 556789999998 67766433 2 478888876542 2445677888888543
No 146
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.31 E-value=22 Score=28.22 Aligned_cols=46 Identities=20% Similarity=0.511 Sum_probs=28.6
Q ss_pred cccccccCC--C----cEEecCCCCCcccccccccCCC---------cccCCCCCccCccchhhh
Q 005228 334 NLCVKCNKD--G----QLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 334 n~CikC~kd--G----qLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y~~ 383 (707)
..|..|++. | +.|.-. + -.+|..||-+. .-|...|..||..|..++
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~--~--~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 66 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQ--D--SQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGM 66 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEET--T--EEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCC
T ss_pred CCCccCCCcccCCCCceeEEEC--C--cccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhh
Confidence 578888874 3 555443 2 35677776553 223456788999986543
No 147
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=26.11 E-value=26 Score=27.77 Aligned_cols=34 Identities=29% Similarity=0.650 Sum_probs=27.2
Q ss_pred ccccccccccCC--C---cEEecCCCCCcccccccccCCCc
Q 005228 331 TEQNLCVKCNKD--G---QLLSCSSSTCPLAVHENCLGFPV 366 (707)
Q Consensus 331 ~eqn~CikC~kd--G---qLL~Cs~~gCplavH~~Clg~s~ 366 (707)
..-..|-.|++- | |-|.|. .|-+.+|.+|...-+
T Consensus 18 ~~pt~C~~C~~~l~Gl~~qg~~C~--~C~~~~Hk~C~~~v~ 56 (65)
T 3uej_A 18 MSPTFCDHCGSLLWGLVKQGLKCE--DCGMNVHHKCREKVA 56 (65)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEET--TTCCEECHHHHTTSC
T ss_pred CCCCcccccChhhhccCceeeECC--CCCCeEchhHhhhCC
Confidence 344678888764 4 789999 999999999987654
No 148
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=25.06 E-value=30 Score=27.65 Aligned_cols=32 Identities=28% Similarity=0.739 Sum_probs=25.9
Q ss_pred cccccccccCC--C---cEEecCCCCCcccccccccCCC
Q 005228 332 EQNLCVKCNKD--G---QLLSCSSSTCPLAVHENCLGFP 365 (707)
Q Consensus 332 eqn~CikC~kd--G---qLL~Cs~~gCplavH~~Clg~s 365 (707)
.-..|-.|++- | |=|.|. .|-+.+|.+|...-
T Consensus 23 ~pt~C~~C~~~l~Gl~~qg~~C~--~C~~~~Hk~C~~~v 59 (66)
T 1y8f_A 23 TPTYCYECEGLLWGIARQGMRCT--ECGVKCHEKCQDLL 59 (66)
T ss_dssp SCCCCTTTCCCCCSSCCEEEEET--TTCCEECTTHHHHS
T ss_pred CCcChhhcChhhcccCcceeEcC--CCCCeeCHHHHhhC
Confidence 34678899775 5 789999 99999999997653
No 149
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.88 E-value=37 Score=26.97 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=28.1
Q ss_pred cccccccCC--CcEEecCCCCCcccccccccCCC---cc-------cCCCCCccCccchhh
Q 005228 334 NLCVKCNKD--GQLLSCSSSTCPLAVHENCLGFP---VK-------FDEKGNFHCPFCAYT 382 (707)
Q Consensus 334 n~CikC~kd--GqLL~Cs~~gCplavH~~Clg~s---~~-------fDd~GnFyCP~C~Y~ 382 (707)
..|-.|++. |+.|.-. --.+|..||-+. .. |...|..||+.|..+
T Consensus 6 ~~C~~C~~~I~~~~v~a~----~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAG----EKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQA 62 (73)
T ss_dssp CSCSSSCCCCSSCCBCCS----SCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHH
T ss_pred CCcccCCCEecCeeEEeC----CCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChH
Confidence 578888875 5554322 246788777643 22 234678999999644
No 150
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.55 E-value=34 Score=26.43 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=27.5
Q ss_pred cccccccccCC--CcEEecCCCCCcccccccccCCC---------cccCCCCCccCccchhh
Q 005228 332 EQNLCVKCNKD--GQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 332 eqn~CikC~kd--GqLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y~ 382 (707)
....|..|++. |+.|.-. --.+|..||-+. .-|...|..||..|+.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQ----DQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKN 61 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEET----TEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred CcCCCcccCCEeCcceEEEC----ccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHH
Confidence 34678888874 4433222 134566665442 22355688999998643
No 151
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=24.02 E-value=31 Score=28.47 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=30.0
Q ss_pred ccccccccCC----CcEEecCCCCCcccccccccCCCc---------ccCCCCCccCccchhh
Q 005228 333 QNLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPV---------KFDEKGNFHCPFCAYT 382 (707)
Q Consensus 333 qn~CikC~kd----GqLL~Cs~~gCplavH~~Clg~s~---------~fDd~GnFyCP~C~Y~ 382 (707)
...|..|++. ++++.-. | -.+|..||-+.. -|...|..||..|+.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 63 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYK--N--RFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTR 63 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEET--T--EEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTT
T ss_pred CCcCcccCCcccCCceEEEEC--c--cChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhh
Confidence 4678888873 5665544 2 367777766542 2456788899998654
No 152
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.80 E-value=41 Score=28.01 Aligned_cols=34 Identities=26% Similarity=0.694 Sum_probs=27.4
Q ss_pred ccccccccccCC--C---cEEecCCCCCcccccccccCCCc
Q 005228 331 TEQNLCVKCNKD--G---QLLSCSSSTCPLAVHENCLGFPV 366 (707)
Q Consensus 331 ~eqn~CikC~kd--G---qLL~Cs~~gCplavH~~Clg~s~ 366 (707)
..-..|-.|++- | |=|.|. .|-+.+|.+|...-+
T Consensus 26 ~~pt~C~~C~~~lwGl~kqg~~C~--~C~~~~Hk~C~~~v~ 64 (83)
T 2yuu_A 26 GQPTFCSVCKDFVWGLNKQGYKCR--QCNAAIHKKCIDKII 64 (83)
T ss_dssp SSCCCCSSSCCCCCSSSCCEEEET--TTCCEECTTGGGTCC
T ss_pred CCCcChhhcChhhccccccccccC--CcCCeeChhhhhhCC
Confidence 344779999874 4 779999 999999999987643
No 153
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=23.79 E-value=35 Score=27.14 Aligned_cols=33 Identities=30% Similarity=0.693 Sum_probs=26.5
Q ss_pred cccccccccCC--C---cEEecCCCCCcccccccccCCCc
Q 005228 332 EQNLCVKCNKD--G---QLLSCSSSTCPLAVHENCLGFPV 366 (707)
Q Consensus 332 eqn~CikC~kd--G---qLL~Cs~~gCplavH~~Clg~s~ 366 (707)
.-..|-.|++- | |=|.|. .|-+.+|.+|...-+
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~--~C~~~~Hk~C~~~v~ 59 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCD--ACGMNVHHRCQTKVA 59 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEES--SSCCEECTTTTTTSC
T ss_pred CCcCchhcChhheecCCcccccC--CCCCccCHhHHhhCc
Confidence 34678888763 4 678999 999999999987654
No 154
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.64 E-value=22 Score=28.41 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=27.2
Q ss_pred cccccccC----CCcEEecCCCCCcccccccccCCC---------cccCCCCCccCccchhhh
Q 005228 334 NLCVKCNK----DGQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYTL 383 (707)
Q Consensus 334 n~CikC~k----dGqLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y~~ 383 (707)
..|..|++ +|++|.-. + ...|..||-+. .-|...|..||..|+.++
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYE--D--RHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCS--S--CCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCC
T ss_pred CcCccCCCccccCcEEEEeC--C--ccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhh
Confidence 46777777 34444322 1 34566665543 223556788999997654
No 155
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.62 E-value=24 Score=28.97 Aligned_cols=33 Identities=24% Similarity=0.637 Sum_probs=26.5
Q ss_pred ccccccccccCC--C---cEEecCCCCCcccccccccCCC
Q 005228 331 TEQNLCVKCNKD--G---QLLSCSSSTCPLAVHENCLGFP 365 (707)
Q Consensus 331 ~eqn~CikC~kd--G---qLL~Cs~~gCplavH~~Clg~s 365 (707)
..-..|-.|++- | |=|.|. .|-+.+|.+|...-
T Consensus 26 ~~pt~C~~C~~~lwGl~kqG~~C~--~C~~~~Hk~C~~~v 63 (74)
T 2db6_A 26 KKPKFCDVCARMIVLNNKFGLRCK--NCKTNIHEHCQSYV 63 (74)
T ss_dssp SSCEECSSSCCEECHHHHEEEEES--SSCCEECTTTTGGG
T ss_pred CCCcCchhcChhhccccCCccccC--CCCCccChhHHhhC
Confidence 344779899764 5 789999 99999999998743
No 156
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.24 E-value=35 Score=27.31 Aligned_cols=47 Identities=21% Similarity=0.431 Sum_probs=28.1
Q ss_pred ccccccccCC--CcEEecCCCCCcccccccccCCC--------ccc--CCCCCccCccchhhh
Q 005228 333 QNLCVKCNKD--GQLLSCSSSTCPLAVHENCLGFP--------VKF--DEKGNFHCPFCAYTL 383 (707)
Q Consensus 333 qn~CikC~kd--GqLL~Cs~~gCplavH~~Clg~s--------~~f--Dd~GnFyCP~C~Y~~ 383 (707)
...|..|++. |++|.=. + -..|..||.+. ..| +..|..||..|+.++
T Consensus 15 ~~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAM--G--KAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp CCBCTTTCCBCCSCCEEET--T--EEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred CCccccCCCeecceeEEEC--C--ccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 3578888874 4544322 1 34676666543 223 336899999997553
No 157
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=22.51 E-value=21 Score=27.39 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=26.7
Q ss_pred cccccccCC--CcEEecCCCCCcccccccccCCC---------cccCCCCCccCccchhh
Q 005228 334 NLCVKCNKD--GQLLSCSSSTCPLAVHENCLGFP---------VKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 334 n~CikC~kd--GqLL~Cs~~gCplavH~~Clg~s---------~~fDd~GnFyCP~C~Y~ 382 (707)
..|..|++. |+.+.-. | -.+|..||-+. .-|...|..||..|+..
T Consensus 6 ~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAM--G--KQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp CEETTTTEECCSCEECCT--T--SBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CCCcccCCEecceEEEEC--c--cccccCcCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 567777763 4444332 2 25677765543 23455688999998643
No 158
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=21.84 E-value=41 Score=31.02 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=31.5
Q ss_pred CccccccccccCC---CcEEecCCCCCcccccccccCCC--------cccCCCCCccCccchhh
Q 005228 330 WTEQNLCVKCNKD---GQLLSCSSSTCPLAVHENCLGFP--------VKFDEKGNFHCPFCAYT 382 (707)
Q Consensus 330 ~~eqn~CikC~kd---GqLL~Cs~~gCplavH~~Clg~s--------~~fDd~GnFyCP~C~Y~ 382 (707)
......|..|++. +.+|.-. --.+|..||-+. ..|.-.|..||..|+++
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~ 116 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKAL----DRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFK 116 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEET----TEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHH
T ss_pred CCCCCcCccCCCCccCceeEEec----CCeEccccCccCCCCCccCCCceeECCEeeecCcccc
Confidence 3456799999984 4344333 135777776543 12556789999999764
No 159
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.80 E-value=51 Score=27.67 Aligned_cols=33 Identities=30% Similarity=0.694 Sum_probs=26.8
Q ss_pred cccccccccCC--C---cEEecCCCCCcccccccccCCCc
Q 005228 332 EQNLCVKCNKD--G---QLLSCSSSTCPLAVHENCLGFPV 366 (707)
Q Consensus 332 eqn~CikC~kd--G---qLL~Cs~~gCplavH~~Clg~s~ 366 (707)
.-..|-.|++- | |=|.|. .|-+.+|.+|...-+
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~--~C~~~~Hk~C~~~v~ 64 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCD--TCDMNVHKQCVINVP 64 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECS--SSCCEEETTTTTTSC
T ss_pred CCcCCcccCccccccccCCCcCC--CcCCccCHhHHhhcC
Confidence 34678888764 5 789999 999999999987644
No 160
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.08 E-value=37 Score=29.57 Aligned_cols=44 Identities=18% Similarity=0.398 Sum_probs=27.4
Q ss_pred cccccccCC----CcEEecCCCCCcccccccccCCCc----------ccCCCCCccCccchh
Q 005228 334 NLCVKCNKD----GQLLSCSSSTCPLAVHENCLGFPV----------KFDEKGNFHCPFCAY 381 (707)
Q Consensus 334 n~CikC~kd----GqLL~Cs~~gCplavH~~Clg~s~----------~fDd~GnFyCP~C~Y 381 (707)
..|..|++. +.++.-. --.+|..||.+.. -|...|..||..|+.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~ 66 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVK----DKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIY 66 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCS----SCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHH
T ss_pred CcccCCCCeecCCceEEEEC----CcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhH
Confidence 378888875 2233222 2467888866532 234568899999963
No 161
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.47 E-value=35 Score=27.24 Aligned_cols=46 Identities=15% Similarity=0.475 Sum_probs=28.1
Q ss_pred cccccccCC--CcEEecCCCCCcccccccccCCC---------ccc--CCCCCccCccchhhh
Q 005228 334 NLCVKCNKD--GQLLSCSSSTCPLAVHENCLGFP---------VKF--DEKGNFHCPFCAYTL 383 (707)
Q Consensus 334 n~CikC~kd--GqLL~Cs~~gCplavH~~Clg~s---------~~f--Dd~GnFyCP~C~Y~~ 383 (707)
..|..|++. |+.|.-. --..|..||-+. ..| ...|..||..|+.+.
T Consensus 16 ~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~ 74 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAG----EFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV 74 (81)
T ss_dssp CBCTTTCCBCCSCCBCCT----TCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHH
T ss_pred CcCccCCCCcCceEEEEC----CceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHH
Confidence 368888774 4433222 245677775542 334 578899999996543
No 162
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=20.25 E-value=84 Score=30.24 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 005228 380 AYTLSISEYLEAKKRASVARKELAAFMQM 408 (707)
Q Consensus 380 ~Y~~a~~ey~eaKk~a~~AKK~L~~Fl~~ 408 (707)
|+.+......++|..+..+|++|..|.+.
T Consensus 137 ~l~~i~~~L~~~k~e~~~~~~~L~~~~~~ 165 (167)
T 2r25_A 137 YLILIAKALNQSRLEFKLARIELSKYYNT 165 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35667788899999999999999999875
Done!