Query 005229
Match_columns 707
No_of_seqs 415 out of 1390
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 20:09:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07899 Frigida: Frigida-like 100.0 2.5E-56 5.4E-61 462.1 13.5 196 358-554 18-214 (290)
2 COG1196 Smc Chromosome segrega 99.8 4.3E-18 9.2E-23 210.6 36.2 157 301-504 946-1110(1163)
3 cd00018 AP2 DNA-binding domain 99.8 2E-19 4.3E-24 144.0 7.1 61 637-697 1-61 (61)
4 KOG0933 Structural maintenance 99.8 8.8E-15 1.9E-19 165.8 42.4 236 14-253 707-946 (1174)
5 smart00380 AP2 DNA-binding dom 99.8 7.5E-19 1.6E-23 141.8 7.2 63 638-700 1-63 (64)
6 TIGR02169 SMC_prok_A chromosom 99.7 1.1E-14 2.4E-19 182.4 36.3 158 299-504 953-1118(1164)
7 TIGR02168 SMC_prok_B chromosom 99.6 6.8E-13 1.5E-17 166.4 38.6 34 462-495 1091-1124(1179)
8 KOG0018 Structural maintenance 99.5 1.4E-11 3.1E-16 141.4 34.4 167 292-508 925-1099(1141)
9 TIGR02169 SMC_prok_A chromosom 99.5 5.2E-10 1.1E-14 140.5 43.9 57 55-111 226-282 (1164)
10 TIGR02168 SMC_prok_B chromosom 99.4 1.5E-09 3.1E-14 136.5 42.1 244 10-253 181-426 (1179)
11 KOG0996 Structural maintenance 99.4 1E-09 2.2E-14 127.4 34.5 389 58-495 819-1230(1293)
12 KOG0964 Structural maintenance 99.4 8.9E-09 1.9E-13 117.3 40.0 54 462-529 1099-1152(1200)
13 COG1196 Smc Chromosome segrega 99.3 3.5E-08 7.5E-13 123.0 42.0 272 10-284 188-461 (1163)
14 PHA00280 putative NHN endonucl 99.3 7.2E-12 1.6E-16 112.6 6.4 62 628-692 58-120 (121)
15 TIGR00606 rad50 rad50. This fa 99.2 1.5E-07 3.3E-12 118.8 46.6 33 6-38 749-781 (1311)
16 KOG0161 Myosin class II heavy 99.2 2E-07 4.4E-12 116.5 45.6 71 119-189 961-1031(1930)
17 KOG0161 Myosin class II heavy 99.2 2.2E-07 4.7E-12 116.3 43.4 90 184-273 1054-1143(1930)
18 PF07888 CALCOCO1: Calcium bin 99.2 8.5E-07 1.8E-11 98.5 41.6 88 246-336 369-456 (546)
19 KOG0250 DNA repair protein RAD 99.2 3.9E-07 8.5E-12 106.5 40.0 265 53-327 208-473 (1074)
20 PRK03918 chromosome segregatio 99.1 1.8E-06 3.9E-11 105.6 46.3 24 15-38 200-223 (880)
21 PRK03918 chromosome segregatio 99.1 2E-06 4.4E-11 105.1 46.2 6 468-473 796-801 (880)
22 PRK01156 chromosome segregatio 99.1 2.6E-06 5.5E-11 104.3 45.8 8 485-492 837-844 (895)
23 TIGR00606 rad50 rad50. This fa 99.1 1.1E-06 2.3E-11 111.2 43.2 28 6-33 700-727 (1311)
24 PF10174 Cast: RIM-binding pro 99.1 3.3E-06 7.1E-11 98.8 43.0 182 5-188 228-409 (775)
25 KOG0250 DNA repair protein RAD 99.1 7E-06 1.5E-10 96.3 45.2 54 462-528 991-1044(1074)
26 PF00261 Tropomyosin: Tropomyo 99.1 1E-07 2.3E-12 97.7 27.1 212 55-266 18-229 (237)
27 KOG0996 Structural maintenance 99.0 4.7E-06 1E-10 97.7 41.5 92 245-336 476-567 (1293)
28 PF10174 Cast: RIM-binding pro 99.0 6.3E-06 1.4E-10 96.5 42.9 151 87-237 273-423 (775)
29 PF07888 CALCOCO1: Calcium bin 99.0 3.9E-06 8.5E-11 93.3 39.0 38 55-92 174-211 (546)
30 PRK04778 septation ring format 99.0 5.5E-06 1.2E-10 95.8 41.5 45 296-341 447-492 (569)
31 KOG0933 Structural maintenance 98.9 1.4E-05 3E-10 92.4 38.8 41 455-495 1075-1117(1174)
32 KOG4674 Uncharacterized conser 98.9 8.6E-06 1.9E-10 100.7 38.8 161 166-326 967-1131(1822)
33 PF00847 AP2: AP2 domain; Int 98.9 3.1E-09 6.6E-14 83.4 5.3 52 637-688 1-56 (56)
34 KOG0964 Structural maintenance 98.9 1.8E-05 3.9E-10 91.1 37.0 90 221-310 398-494 (1200)
35 PF05701 WEMBL: Weak chloropla 98.8 0.00016 3.5E-09 82.7 43.3 26 17-42 29-54 (522)
36 PF00038 Filament: Intermediat 98.8 0.00015 3.2E-09 77.8 40.9 107 55-161 7-114 (312)
37 KOG0971 Microtubule-associated 98.8 7.2E-05 1.6E-09 85.4 39.1 66 168-233 372-437 (1243)
38 PF05701 WEMBL: Weak chloropla 98.8 0.00022 4.7E-09 81.6 44.0 24 6-29 32-55 (522)
39 KOG4643 Uncharacterized coiled 98.8 0.00037 8.1E-09 80.9 44.6 93 2-94 258-350 (1195)
40 KOG0976 Rho/Rac1-interacting s 98.8 0.00031 6.7E-09 79.4 42.7 77 51-127 91-167 (1265)
41 KOG0976 Rho/Rac1-interacting s 98.8 0.00023 4.9E-09 80.4 41.6 112 4-117 95-206 (1265)
42 KOG0995 Centromere-associated 98.8 7.2E-05 1.6E-09 82.6 37.2 255 71-325 233-520 (581)
43 KOG0971 Microtubule-associated 98.8 1.4E-05 3.1E-10 90.9 32.2 248 50-297 274-546 (1243)
44 KOG4674 Uncharacterized conser 98.8 0.00039 8.5E-09 86.6 46.5 243 4-246 55-324 (1822)
45 KOG0977 Nuclear envelope prote 98.8 8.7E-05 1.9E-09 82.8 37.2 309 6-328 47-366 (546)
46 PRK04778 septation ring format 98.7 0.00012 2.5E-09 84.9 38.8 343 6-348 124-506 (569)
47 KOG0995 Centromere-associated 98.7 0.0014 3.1E-08 72.6 42.9 64 49-112 263-326 (581)
48 PHA02562 46 endonuclease subun 98.6 4.1E-05 8.9E-10 88.9 32.2 10 393-402 495-504 (562)
49 COG1340 Uncharacterized archae 98.6 0.00045 9.8E-09 71.3 35.3 92 193-284 159-250 (294)
50 PHA02562 46 endonuclease subun 98.6 2.8E-05 6E-10 90.3 30.4 55 130-184 221-275 (562)
51 KOG1029 Endocytic adaptor prot 98.6 0.00037 8.1E-09 78.6 35.5 111 107-217 392-504 (1118)
52 PF00038 Filament: Intermediat 98.6 0.00069 1.5E-08 72.6 37.2 60 55-114 50-109 (312)
53 PRK04863 mukB cell division pr 98.6 0.00031 6.7E-09 88.4 39.1 40 245-284 562-601 (1486)
54 PF05667 DUF812: Protein of un 98.6 0.00039 8.5E-09 79.8 36.7 210 63-281 325-538 (594)
55 KOG4643 Uncharacterized coiled 98.6 0.0019 4E-08 75.3 41.2 25 15-39 198-222 (1195)
56 KOG0612 Rho-associated, coiled 98.6 0.00075 1.6E-08 80.2 38.7 18 442-459 980-998 (1317)
57 PF05483 SCP-1: Synaptonemal c 98.5 0.0031 6.7E-08 70.9 41.2 65 96-160 351-415 (786)
58 KOG1029 Endocytic adaptor prot 98.5 0.00031 6.7E-09 79.3 33.5 26 642-669 1006-1032(1118)
59 PF12128 DUF3584: Protein of u 98.5 0.011 2.3E-07 74.7 52.5 31 426-456 963-994 (1201)
60 KOG0977 Nuclear envelope prote 98.5 0.00029 6.2E-09 78.8 32.1 98 56-153 39-144 (546)
61 PF12128 DUF3584: Protein of u 98.5 0.013 2.8E-07 74.0 55.9 50 488-539 965-1016(1201)
62 PRK04863 mukB cell division pr 98.5 0.0014 3E-08 82.7 41.7 45 643-690 1340-1390(1486)
63 PF06160 EzrA: Septation ring 98.5 0.0052 1.1E-07 71.1 43.2 111 7-128 59-181 (560)
64 COG1340 Uncharacterized archae 98.5 0.0025 5.4E-08 65.9 35.9 56 225-280 163-218 (294)
65 KOG0018 Structural maintenance 98.4 0.00031 6.6E-09 82.4 31.0 10 523-532 871-880 (1141)
66 COG0419 SbcC ATPase involved i 98.4 0.01 2.2E-07 73.0 46.4 59 462-523 817-888 (908)
67 PF15070 GOLGA2L5: Putative go 98.4 0.0011 2.5E-08 76.4 35.5 38 5-42 33-70 (617)
68 PRK11637 AmiB activator; Provi 98.4 0.00025 5.3E-09 79.5 29.6 8 637-644 408-415 (428)
69 COG0419 SbcC ATPase involved i 98.4 0.016 3.5E-07 71.2 47.0 16 291-306 601-616 (908)
70 PF14915 CCDC144C: CCDC144C pr 98.4 0.0052 1.1E-07 63.2 36.5 199 74-272 57-259 (305)
71 KOG4673 Transcription factor T 98.3 0.0054 1.2E-07 68.8 36.3 159 75-233 404-564 (961)
72 KOG0612 Rho-associated, coiled 98.3 0.0032 6.9E-08 75.1 36.6 25 169-193 621-645 (1317)
73 KOG0994 Extracellular matrix g 98.3 0.0037 8.1E-08 73.5 36.1 7 23-29 1423-1429(1758)
74 PF05483 SCP-1: Synaptonemal c 98.3 0.015 3.3E-07 65.6 43.5 38 8-45 85-122 (786)
75 PF15070 GOLGA2L5: Putative go 98.3 0.0066 1.4E-07 70.3 37.1 22 98-119 84-105 (617)
76 PF06160 EzrA: Septation ring 98.3 0.021 4.5E-07 66.2 44.1 28 312-339 466-493 (560)
77 PF09726 Macoilin: Transmembra 98.2 0.00062 1.3E-08 79.7 28.4 21 221-241 588-608 (697)
78 KOG0946 ER-Golgi vesicle-tethe 98.2 0.0011 2.4E-08 75.6 29.1 68 205-272 805-872 (970)
79 KOG1003 Actin filament-coating 98.2 0.0016 3.4E-08 62.7 25.7 99 53-151 12-110 (205)
80 KOG4673 Transcription factor T 98.2 0.005 1.1E-07 69.1 33.1 161 90-255 405-565 (961)
81 PF09728 Taxilin: Myosin-like 98.2 0.012 2.6E-07 62.7 35.2 98 55-152 60-158 (309)
82 COG5185 HEC1 Protein involved 98.2 0.012 2.5E-07 63.6 33.6 137 15-151 264-404 (622)
83 TIGR03185 DNA_S_dndD DNA sulfu 98.2 0.012 2.6E-07 69.6 37.7 69 24-95 184-252 (650)
84 KOG1003 Actin filament-coating 98.2 0.0037 8.1E-08 60.2 26.6 194 74-267 5-198 (205)
85 PF01576 Myosin_tail_1: Myosin 98.2 4E-07 8.6E-12 109.4 0.0 13 8-20 138-150 (859)
86 COG4372 Uncharacterized protei 98.2 0.0035 7.5E-08 66.0 28.6 98 81-178 75-172 (499)
87 PF05667 DUF812: Protein of un 98.1 0.0073 1.6E-07 69.6 33.8 84 201-284 442-527 (594)
88 COG4942 Membrane-bound metallo 98.1 0.006 1.3E-07 66.3 30.3 66 55-120 41-106 (420)
89 KOG0963 Transcription factor/C 98.1 0.035 7.5E-07 62.5 41.2 43 296-339 316-358 (629)
90 KOG0946 ER-Golgi vesicle-tethe 98.1 0.0023 4.9E-08 73.2 27.2 238 72-317 642-882 (970)
91 PF09730 BicD: Microtubule-ass 98.1 0.05 1.1E-06 63.5 41.6 76 53-128 77-155 (717)
92 COG1579 Zn-ribbon protein, pos 98.1 0.00071 1.5E-08 68.4 21.0 21 167-187 62-82 (239)
93 COG4372 Uncharacterized protei 98.0 0.014 3.1E-07 61.5 30.3 96 56-151 78-173 (499)
94 PF12718 Tropomyosin_1: Tropom 98.0 0.0013 2.8E-08 61.9 20.2 64 56-119 4-67 (143)
95 PF09730 BicD: Microtubule-ass 98.0 0.08 1.7E-06 61.9 43.0 50 194-243 267-316 (717)
96 PF12718 Tropomyosin_1: Tropom 97.9 0.0022 4.9E-08 60.3 20.5 12 94-105 49-60 (143)
97 PF15619 Lebercilin: Ciliary p 97.9 0.014 2.9E-07 57.9 26.6 93 55-154 15-107 (194)
98 KOG4809 Rab6 GTPase-interactin 97.9 0.067 1.5E-06 59.0 34.2 134 128-261 330-469 (654)
99 KOG4809 Rab6 GTPase-interactin 97.9 0.067 1.5E-06 59.0 35.1 17 383-399 616-632 (654)
100 COG4477 EzrA Negative regulato 97.9 0.082 1.8E-06 58.6 36.1 90 5-96 208-297 (570)
101 TIGR03185 DNA_S_dndD DNA sulfu 97.9 0.09 2E-06 62.2 37.2 18 462-479 553-570 (650)
102 KOG0963 Transcription factor/C 97.8 0.094 2E-06 59.1 36.8 34 302-335 308-341 (629)
103 KOG0980 Actin-binding protein 97.8 0.033 7.1E-07 64.7 30.9 59 438-496 680-750 (980)
104 PF15619 Lebercilin: Ciliary p 97.8 0.013 2.7E-07 58.1 24.5 35 228-262 158-192 (194)
105 PF14662 CCDC155: Coiled-coil 97.8 0.035 7.6E-07 53.8 25.8 99 110-208 83-181 (193)
106 KOG0999 Microtubule-associated 97.8 0.086 1.9E-06 58.2 31.5 30 225-254 154-183 (772)
107 KOG0980 Actin-binding protein 97.8 0.035 7.6E-07 64.4 29.9 28 471-498 878-905 (980)
108 COG4942 Membrane-bound metallo 97.8 0.058 1.3E-06 58.8 30.2 7 455-461 320-326 (420)
109 KOG0979 Structural maintenance 97.8 0.037 8E-07 65.3 30.4 43 53-95 182-224 (1072)
110 PF14915 CCDC144C: CCDC144C pr 97.7 0.08 1.7E-06 54.6 38.1 25 316-340 276-300 (305)
111 PF04849 HAP1_N: HAP1 N-termin 97.7 0.036 7.7E-07 58.0 26.7 141 131-274 162-302 (306)
112 COG3883 Uncharacterized protei 97.7 0.082 1.8E-06 54.2 28.1 58 57-114 36-93 (265)
113 PF05010 TACC: Transforming ac 97.6 0.082 1.8E-06 52.7 28.1 76 122-197 62-137 (207)
114 KOG0979 Structural maintenance 97.6 0.039 8.4E-07 65.1 28.3 20 35-54 149-168 (1072)
115 PF04849 HAP1_N: HAP1 N-termin 97.6 0.025 5.3E-07 59.2 23.7 142 174-318 163-304 (306)
116 KOG0962 DNA repair protein RAD 97.6 0.35 7.5E-06 59.5 35.9 24 518-541 1130-1156(1294)
117 PF05557 MAD: Mitotic checkpoi 97.5 2E-05 4.3E-10 94.0 0.0 9 442-450 555-563 (722)
118 PRK09039 hypothetical protein; 97.5 0.027 5.8E-07 61.0 24.1 55 50-104 44-98 (343)
119 TIGR02680 conserved hypothetic 97.5 0.13 2.7E-06 65.8 33.2 13 468-480 1166-1178(1353)
120 TIGR02680 conserved hypothetic 97.5 0.16 3.6E-06 64.8 33.9 91 5-95 746-836 (1353)
121 PRK11281 hypothetical protein; 97.5 0.21 4.5E-06 61.9 33.0 57 166-222 194-250 (1113)
122 COG5185 HEC1 Protein involved 97.4 0.27 5.8E-06 53.5 36.3 88 72-159 270-360 (622)
123 COG4477 EzrA Negative regulato 97.4 0.32 7E-06 54.1 36.4 136 195-330 350-487 (570)
124 PF09787 Golgin_A5: Golgin sub 97.4 0.4 8.7E-06 55.0 33.8 48 289-336 384-431 (511)
125 KOG0962 DNA repair protein RAD 97.4 0.64 1.4E-05 57.2 40.7 31 132-162 881-911 (1294)
126 PF05622 HOOK: HOOK protein; 97.4 3.5E-05 7.6E-10 91.7 0.0 28 6-33 198-225 (713)
127 KOG4593 Mitotic checkpoint pro 97.4 0.42 9.2E-06 54.7 42.7 17 130-146 252-268 (716)
128 PF05010 TACC: Transforming ac 97.4 0.19 4E-06 50.2 27.7 33 293-325 171-203 (207)
129 KOG0978 E3 ubiquitin ligase in 97.3 0.52 1.1E-05 54.8 42.2 7 401-407 668-674 (698)
130 PF05557 MAD: Mitotic checkpoi 97.3 0.00011 2.5E-09 87.5 3.3 26 512-537 687-712 (722)
131 PRK09039 hypothetical protein; 97.3 0.059 1.3E-06 58.4 23.8 16 393-408 305-320 (343)
132 PF09789 DUF2353: Uncharacteri 97.3 0.23 4.9E-06 52.6 27.2 107 173-281 74-180 (319)
133 PRK10246 exonuclease subunit S 97.3 0.88 1.9E-05 56.9 37.3 16 508-523 1007-1022(1047)
134 PRK11281 hypothetical protein; 97.3 0.85 1.8E-05 56.6 39.1 26 302-327 405-430 (1113)
135 PRK10929 putative mechanosensi 97.3 0.84 1.8E-05 56.5 38.5 27 302-328 381-407 (1109)
136 PF05911 DUF869: Plant protein 97.3 0.22 4.9E-06 59.0 29.3 39 166-204 605-643 (769)
137 PF13514 AAA_27: AAA domain 97.2 1.2 2.5E-05 56.4 38.0 49 48-96 655-703 (1111)
138 KOG1937 Uncharacterized conser 97.2 0.46 9.9E-06 51.6 30.1 44 218-261 387-430 (521)
139 PF08317 Spc7: Spc7 kinetochor 97.2 0.43 9.3E-06 51.5 28.7 32 166-197 211-242 (325)
140 PF05622 HOOK: HOOK protein; 97.2 8.2E-05 1.8E-09 88.6 0.0 15 52-66 291-305 (713)
141 PF09789 DUF2353: Uncharacteri 97.2 0.27 5.9E-06 52.1 26.0 37 229-265 191-227 (319)
142 PF09728 Taxilin: Myosin-like 97.2 0.45 9.8E-06 50.8 39.6 24 299-322 239-262 (309)
143 KOG0999 Microtubule-associated 97.2 0.6 1.3E-05 51.9 37.1 20 16-35 9-28 (772)
144 PF15066 CAGE1: Cancer-associa 97.1 0.49 1.1E-05 51.6 26.7 61 122-182 376-436 (527)
145 PF09755 DUF2046: Uncharacteri 97.1 0.53 1.1E-05 49.4 35.5 34 53-86 28-61 (310)
146 KOG1937 Uncharacterized conser 97.0 0.81 1.8E-05 49.8 28.8 50 263-314 470-519 (521)
147 PF05911 DUF869: Plant protein 96.9 0.41 9E-06 56.8 27.1 113 156-268 602-714 (769)
148 PRK10246 exonuclease subunit S 96.9 2 4.3E-05 53.8 38.8 12 362-373 889-900 (1047)
149 PRK10929 putative mechanosensi 96.9 1.9 4.1E-05 53.5 41.1 33 8-40 58-90 (1109)
150 PF06818 Fez1: Fez1; InterPro 96.9 0.44 9.5E-06 47.0 22.5 31 291-321 167-197 (202)
151 PF13870 DUF4201: Domain of un 96.9 0.27 5.9E-06 48.1 21.3 89 122-210 42-130 (177)
152 PF15066 CAGE1: Cancer-associa 96.8 1.1 2.4E-05 49.0 26.9 123 196-321 387-509 (527)
153 smart00787 Spc7 Spc7 kinetocho 96.8 0.53 1.1E-05 50.3 24.3 76 165-240 205-284 (312)
154 TIGR01843 type_I_hlyD type I s 96.8 0.58 1.3E-05 52.1 26.3 12 20-31 86-97 (423)
155 TIGR01843 type_I_hlyD type I s 96.8 0.38 8.2E-06 53.6 24.5 16 174-189 206-221 (423)
156 PF13851 GAS: Growth-arrest sp 96.8 0.71 1.5E-05 46.1 23.9 44 88-131 35-78 (201)
157 PF09787 Golgin_A5: Golgin sub 96.7 1.6 3.6E-05 50.0 31.4 64 6-72 107-175 (511)
158 TIGR00634 recN DNA repair prot 96.7 0.28 6.1E-06 57.1 23.7 44 50-93 159-202 (563)
159 PF10481 CENP-F_N: Cenp-F N-te 96.6 0.22 4.7E-06 50.6 18.4 22 439-460 273-294 (307)
160 PF07111 HCR: Alpha helical co 96.6 2.1 4.6E-05 49.4 34.3 17 199-215 306-322 (739)
161 TIGR00634 recN DNA repair prot 96.6 0.54 1.2E-05 54.8 24.7 8 395-402 463-470 (563)
162 KOG0243 Kinesin-like protein [ 96.6 2.9 6.3E-05 50.6 34.3 17 445-461 853-869 (1041)
163 KOG4360 Uncharacterized coiled 96.5 0.34 7.5E-06 53.3 20.7 141 131-275 161-302 (596)
164 PF10481 CENP-F_N: Cenp-F N-te 96.5 0.25 5.4E-06 50.2 18.2 85 108-192 39-123 (307)
165 TIGR01005 eps_transp_fam exopo 96.5 0.2 4.4E-06 60.4 20.9 51 462-525 556-607 (754)
166 KOG1899 LAR transmembrane tyro 96.4 0.42 9.1E-06 53.7 20.8 70 102-171 140-209 (861)
167 PF06818 Fez1: Fez1; InterPro 96.4 1.2 2.5E-05 44.1 21.7 30 127-156 64-93 (202)
168 PF13851 GAS: Growth-arrest sp 96.4 1.2 2.7E-05 44.4 25.3 103 166-272 29-131 (201)
169 KOG0982 Centrosomal protein Nu 96.4 2 4.3E-05 46.6 29.5 81 75-155 217-297 (502)
170 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.4 0.81 1.8E-05 42.5 19.8 12 102-113 25-36 (132)
171 TIGR03007 pepcterm_ChnLen poly 96.4 0.77 1.7E-05 52.6 24.0 20 441-460 464-483 (498)
172 TIGR03007 pepcterm_ChnLen poly 96.3 0.92 2E-05 51.9 24.5 31 245-275 352-382 (498)
173 PRK10869 recombination and rep 96.3 0.95 2.1E-05 52.5 24.1 45 50-94 155-199 (553)
174 PF10168 Nup88: Nuclear pore c 96.2 0.47 1E-05 56.4 21.6 29 248-276 685-713 (717)
175 KOG0243 Kinesin-like protein [ 96.2 4.5 9.7E-05 49.1 37.6 65 18-89 407-471 (1041)
176 KOG4593 Mitotic checkpoint pro 96.2 3.4 7.4E-05 47.7 42.8 29 131-159 239-267 (716)
177 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.2 0.41 8.8E-06 44.5 16.8 97 220-323 31-127 (132)
178 TIGR01005 eps_transp_fam exopo 96.1 1.3 2.8E-05 53.5 25.1 54 228-281 346-402 (754)
179 KOG1899 LAR transmembrane tyro 96.0 1.3 2.9E-05 49.9 22.1 140 55-194 107-247 (861)
180 PF13166 AAA_13: AAA domain 96.0 1.6 3.5E-05 52.3 25.1 54 228-281 418-471 (712)
181 KOG0982 Centrosomal protein Nu 96.0 3.1 6.7E-05 45.1 24.3 32 127-158 302-333 (502)
182 PF10168 Nup88: Nuclear pore c 95.9 0.7 1.5E-05 54.9 21.1 40 75-114 560-599 (717)
183 PRK10869 recombination and rep 95.8 3.1 6.7E-05 48.3 25.6 10 394-403 452-461 (553)
184 KOG0249 LAR-interacting protei 95.8 2.1 4.5E-05 49.3 22.7 42 241-282 216-257 (916)
185 PF15397 DUF4618: Domain of un 95.8 2.9 6.2E-05 43.1 28.5 44 236-279 181-224 (258)
186 PF13514 AAA_27: AAA domain 95.7 9 0.00019 48.5 46.0 35 73-107 673-707 (1111)
187 PF13166 AAA_13: AAA domain 95.7 3 6.5E-05 50.0 26.0 12 522-533 677-688 (712)
188 KOG4360 Uncharacterized coiled 95.7 1.3 2.8E-05 49.0 20.0 96 224-319 209-304 (596)
189 PF09755 DUF2046: Uncharacteri 95.7 3.4 7.5E-05 43.5 37.1 41 55-95 23-63 (310)
190 TIGR03017 EpsF chain length de 95.4 3.1 6.7E-05 46.8 23.3 33 250-282 337-369 (444)
191 PF04111 APG6: Autophagy prote 95.4 0.14 3.1E-06 54.7 11.7 63 205-267 70-132 (314)
192 PF04111 APG6: Autophagy prote 95.4 0.26 5.6E-06 52.8 13.6 10 425-434 292-301 (314)
193 TIGR01000 bacteriocin_acc bact 95.4 2.8 6E-05 47.5 22.7 28 5-32 94-121 (457)
194 KOG2991 Splicing regulator [RN 95.3 3.7 8.1E-05 41.5 26.7 55 49-103 105-159 (330)
195 PF12325 TMF_TATA_bd: TATA ele 95.3 1.3 2.7E-05 40.4 15.6 42 110-151 18-59 (120)
196 KOG1850 Myosin-like coiled-coi 95.2 4.8 0.0001 42.1 35.0 76 208-283 231-306 (391)
197 COG2433 Uncharacterized conser 95.1 0.76 1.7E-05 52.0 16.4 8 442-449 611-618 (652)
198 KOG4438 Centromere-associated 95.0 6.7 0.00014 42.8 35.6 29 233-261 365-393 (446)
199 PF13870 DUF4201: Domain of un 95.0 3.8 8.3E-05 40.0 23.8 10 105-114 53-62 (177)
200 PF07111 HCR: Alpha helical co 95.0 9.3 0.0002 44.3 44.3 8 521-528 666-673 (739)
201 PF10498 IFT57: Intra-flagella 94.7 1.9 4.2E-05 46.9 17.8 8 90-97 194-201 (359)
202 COG2433 Uncharacterized conser 94.7 0.65 1.4E-05 52.5 14.3 42 76-117 418-459 (652)
203 TIGR03017 EpsF chain length de 94.5 10 0.00022 42.6 25.6 27 11-37 174-200 (444)
204 KOG0249 LAR-interacting protei 94.5 5.3 0.00012 46.1 20.9 26 212-237 162-187 (916)
205 PF10498 IFT57: Intra-flagella 94.5 1.7 3.7E-05 47.3 16.9 32 90-121 216-247 (359)
206 KOG0804 Cytoplasmic Zn-finger 94.3 2.7 5.9E-05 45.9 17.6 27 119-145 372-398 (493)
207 PF12777 MT: Microtubule-bindi 94.3 8.3 0.00018 41.9 22.0 90 197-286 219-308 (344)
208 KOG4438 Centromere-associated 94.2 10 0.00022 41.4 37.5 42 75-116 154-195 (446)
209 PF15254 CCDC14: Coiled-coil d 94.2 5.4 0.00012 46.6 20.5 19 665-683 825-843 (861)
210 PF03148 Tektin: Tektin family 94.2 11 0.00024 41.6 31.9 13 74-86 138-150 (384)
211 KOG0804 Cytoplasmic Zn-finger 94.1 3.2 7E-05 45.4 17.6 16 249-264 436-451 (493)
212 PF10146 zf-C4H2: Zinc finger- 94.1 2.7 5.8E-05 42.9 16.2 21 166-186 83-103 (230)
213 PF10186 Atg14: UV radiation r 94.1 7.5 0.00016 41.0 20.8 46 173-218 114-159 (302)
214 COG4026 Uncharacterized protei 94.0 0.85 1.8E-05 45.0 11.9 77 223-299 131-207 (290)
215 PF04012 PspA_IM30: PspA/IM30 94.0 7.7 0.00017 39.2 23.8 46 50-95 28-73 (221)
216 PF04912 Dynamitin: Dynamitin 94.0 12 0.00027 41.3 24.3 53 12-64 91-144 (388)
217 PF11559 ADIP: Afadin- and alp 93.6 6.7 0.00015 37.2 18.5 47 104-150 76-122 (151)
218 KOG2196 Nuclear porin [Nuclear 93.6 7 0.00015 39.5 17.6 64 85-148 76-139 (254)
219 PF14073 Cep57_CLD: Centrosome 93.6 7.6 0.00017 37.6 21.2 95 124-218 59-153 (178)
220 PF12777 MT: Microtubule-bindi 93.3 14 0.00031 40.1 22.1 62 247-308 220-281 (344)
221 PLN02939 transferase, transfer 93.3 26 0.00056 43.0 33.2 50 50-99 133-182 (977)
222 PF14992 TMCO5: TMCO5 family 93.2 12 0.00026 39.0 20.8 39 471-511 229-267 (280)
223 KOG0244 Kinesin-like protein [ 93.2 15 0.00033 44.0 22.4 71 164-234 467-537 (913)
224 KOG0239 Kinesin (KAR3 subfamil 93.2 11 0.00025 44.5 21.7 23 241-263 300-322 (670)
225 KOG4677 Golgi integral membran 93.2 16 0.00034 40.1 28.7 19 390-408 507-525 (554)
226 COG4717 Uncharacterized conser 93.0 25 0.00054 42.0 32.5 33 249-281 775-807 (984)
227 KOG4302 Microtubule-associated 92.9 23 0.0005 41.5 41.5 38 424-461 407-445 (660)
228 KOG0239 Kinesin (KAR3 subfamil 92.9 7.2 0.00016 46.1 19.5 13 521-533 494-506 (670)
229 PF11559 ADIP: Afadin- and alp 92.9 8.7 0.00019 36.4 17.3 25 119-143 98-122 (151)
230 PRK12704 phosphodiesterase; Pr 92.9 21 0.00045 41.1 22.8 49 638-698 454-505 (520)
231 TIGR03319 YmdA_YtgF conserved 92.7 22 0.00049 40.8 28.7 49 638-698 448-499 (514)
232 PF06705 SF-assemblin: SF-asse 92.7 14 0.0003 38.2 31.5 53 131-183 87-140 (247)
233 PF10234 Cluap1: Clusterin-ass 92.4 7.2 0.00016 40.5 16.5 86 74-159 170-255 (267)
234 KOG1853 LIS1-interacting prote 92.2 15 0.00031 37.3 21.9 22 439-460 239-260 (333)
235 PF05384 DegS: Sensor protein 92.2 11 0.00025 36.0 22.4 34 62-95 9-42 (159)
236 PF14073 Cep57_CLD: Centrosome 91.9 13 0.00028 36.1 19.6 30 10-39 6-35 (178)
237 PF03148 Tektin: Tektin family 91.7 25 0.00054 38.9 38.5 102 225-326 249-360 (384)
238 PF15290 Syntaphilin: Golgi-lo 91.7 6.4 0.00014 40.5 14.7 20 256-275 153-172 (305)
239 KOG2991 Splicing regulator [RN 91.5 18 0.00038 36.9 23.5 19 140-158 181-199 (330)
240 PF15254 CCDC14: Coiled-coil d 91.0 39 0.00084 39.9 24.3 14 271-284 538-551 (861)
241 PF04912 Dynamitin: Dynamitin 90.9 30 0.00064 38.3 23.8 23 50-72 92-114 (388)
242 PLN03229 acetyl-coenzyme A car 90.7 40 0.00087 39.9 21.7 10 298-307 696-705 (762)
243 COG3096 MukB Uncharacterized p 90.6 40 0.00087 39.4 32.4 48 66-113 836-883 (1480)
244 KOG2129 Uncharacterized conser 90.6 29 0.00063 37.8 25.5 35 167-201 182-217 (552)
245 TIGR02977 phageshock_pspA phag 90.5 22 0.00047 36.1 23.5 45 51-95 30-74 (219)
246 COG5283 Phage-related tail pro 90.5 54 0.0012 40.7 31.0 146 9-163 23-168 (1213)
247 PF09738 DUF2051: Double stran 90.2 14 0.0003 39.3 16.4 42 110-151 79-120 (302)
248 COG4717 Uncharacterized conser 90.2 48 0.001 39.7 34.7 44 55-98 553-596 (984)
249 KOG2129 Uncharacterized conser 90.2 31 0.00068 37.5 26.0 22 213-234 253-274 (552)
250 PF10212 TTKRSYEDQ: Predicted 90.2 9.4 0.0002 43.0 15.7 10 4-13 328-337 (518)
251 PF15294 Leu_zip: Leucine zipp 90.2 15 0.00033 38.3 16.2 139 76-217 128-278 (278)
252 PF11932 DUF3450: Protein of u 89.9 26 0.00057 36.2 19.4 9 384-392 224-232 (251)
253 KOG0992 Uncharacterized conser 89.8 38 0.00082 37.9 36.5 12 74-85 128-139 (613)
254 PF05276 SH3BP5: SH3 domain-bi 89.7 26 0.00057 35.9 27.6 43 171-213 121-163 (239)
255 KOG0972 Huntingtin interacting 89.7 16 0.00035 37.8 15.6 37 117-153 261-297 (384)
256 PF05335 DUF745: Protein of un 89.7 22 0.00048 35.0 17.1 32 119-150 64-95 (188)
257 PRK10698 phage shock protein P 89.4 26 0.00057 35.5 23.4 46 50-95 29-74 (222)
258 PF04012 PspA_IM30: PspA/IM30 89.4 26 0.00056 35.4 22.9 39 76-114 26-64 (221)
259 PF15290 Syntaphilin: Golgi-lo 89.3 18 0.00039 37.4 15.5 47 192-238 124-170 (305)
260 PF10234 Cluap1: Clusterin-ass 89.3 25 0.00055 36.6 17.0 76 199-274 176-258 (267)
261 PLN02939 transferase, transfer 89.1 65 0.0014 39.7 28.8 18 531-548 640-657 (977)
262 PF14992 TMCO5: TMCO5 family 88.8 20 0.00043 37.4 15.8 33 61-93 13-45 (280)
263 PRK00106 hypothetical protein; 88.7 51 0.0011 38.0 22.9 49 638-698 469-520 (535)
264 PF04949 Transcrip_act: Transc 88.4 22 0.00047 33.3 16.8 33 183-215 89-121 (159)
265 KOG4572 Predicted DNA-binding 88.4 61 0.0013 38.4 27.6 72 166-237 997-1069(1424)
266 KOG0240 Kinesin (SMY1 subfamil 88.2 53 0.0012 37.5 23.3 33 74-106 415-447 (607)
267 PF04949 Transcrip_act: Transc 87.8 24 0.00051 33.0 15.3 47 205-251 83-129 (159)
268 KOG4460 Nuclear pore complex, 87.8 54 0.0012 37.1 21.0 28 79-106 587-614 (741)
269 PRK12704 phosphodiesterase; Pr 87.6 60 0.0013 37.4 25.1 10 505-514 348-357 (520)
270 PF05266 DUF724: Protein of un 87.4 17 0.00036 36.0 13.9 26 189-214 156-181 (190)
271 PF15450 DUF4631: Domain of un 87.3 57 0.0012 36.9 41.5 19 374-392 512-530 (531)
272 KOG4460 Nuclear pore complex, 87.2 58 0.0013 36.9 19.3 19 253-271 714-732 (741)
273 PF12329 TMF_DNA_bd: TATA elem 87.1 4.4 9.6E-05 33.6 8.2 33 190-222 10-42 (74)
274 KOG4603 TBP-1 interacting prot 86.9 27 0.00058 33.4 14.0 67 59-125 79-147 (201)
275 PF09738 DUF2051: Double stran 86.9 16 0.00035 38.8 14.2 85 53-137 78-162 (302)
276 COG3074 Uncharacterized protei 86.8 12 0.00027 30.0 9.9 37 122-158 18-54 (79)
277 KOG1850 Myosin-like coiled-coi 86.7 45 0.00099 35.1 35.8 19 247-265 249-267 (391)
278 KOG1924 RhoA GTPase effector D 86.4 4 8.6E-05 47.5 9.9 41 643-686 627-667 (1102)
279 PF05266 DUF724: Protein of un 86.3 27 0.00059 34.5 14.6 7 131-137 161-167 (190)
280 PF02994 Transposase_22: L1 tr 86.2 2.3 4.9E-05 46.7 7.9 9 439-447 286-294 (370)
281 KOG3647 Predicted coiled-coil 86.0 45 0.00097 34.3 15.9 77 71-147 110-186 (338)
282 KOG3091 Nuclear pore complex, 85.7 30 0.00065 38.7 15.8 59 55-113 337-395 (508)
283 PRK15422 septal ring assembly 85.7 15 0.00032 30.6 10.2 23 124-146 20-42 (79)
284 PF15450 DUF4631: Domain of un 85.4 71 0.0015 36.2 40.9 50 76-125 163-217 (531)
285 COG0497 RecN ATPase involved i 85.1 80 0.0017 36.4 24.8 67 201-267 299-368 (557)
286 TIGR02338 gimC_beta prefoldin, 84.9 23 0.00049 31.7 12.4 26 70-95 14-39 (110)
287 PF10212 TTKRSYEDQ: Predicted 84.9 76 0.0016 36.1 22.5 31 245-275 484-514 (518)
288 PRK09841 cryptic autophosphory 84.9 35 0.00077 41.1 17.8 24 462-485 541-564 (726)
289 KOG1853 LIS1-interacting prote 84.5 50 0.0011 33.6 22.7 30 129-158 91-120 (333)
290 PRK09841 cryptic autophosphory 84.5 36 0.00077 41.1 17.6 32 77-108 264-295 (726)
291 COG1382 GimC Prefoldin, chaper 84.4 32 0.00069 31.2 13.1 18 131-148 79-96 (119)
292 COG3074 Uncharacterized protei 83.8 21 0.00046 28.8 10.2 57 73-129 11-67 (79)
293 PRK11519 tyrosine kinase; Prov 83.6 52 0.0011 39.6 18.5 54 462-528 536-590 (719)
294 PF03999 MAP65_ASE1: Microtubu 83.6 1.1 2.4E-05 52.8 4.2 11 449-459 400-410 (619)
295 PF12252 SidE: Dot/Icm substra 83.6 1.2E+02 0.0026 37.3 28.5 31 286-316 1332-1363(1439)
296 COG1842 PspA Phage shock prote 83.2 57 0.0012 33.2 24.2 20 76-95 27-46 (225)
297 KOG3091 Nuclear pore complex, 83.2 47 0.001 37.3 15.9 56 62-117 337-392 (508)
298 KOG1962 B-cell receptor-associ 83.1 29 0.00063 34.8 13.2 22 166-187 188-209 (216)
299 PRK11519 tyrosine kinase; Prov 82.4 57 0.0012 39.3 18.1 31 78-108 265-295 (719)
300 KOG2196 Nuclear porin [Nuclear 82.2 61 0.0013 32.9 18.8 51 64-114 76-126 (254)
301 KOG2264 Exostosin EXT1L [Signa 81.7 11 0.00024 42.4 10.5 20 515-534 512-531 (907)
302 KOG2751 Beclin-like protein [S 81.7 29 0.00062 38.2 13.4 16 299-314 248-263 (447)
303 KOG2264 Exostosin EXT1L [Signa 81.5 10 0.00022 42.7 10.1 56 126-181 90-145 (907)
304 PRK15422 septal ring assembly 81.5 30 0.00064 28.8 10.4 14 80-93 18-31 (79)
305 cd00632 Prefoldin_beta Prefold 81.4 22 0.00048 31.4 10.8 12 126-137 10-21 (105)
306 PF07106 TBPIP: Tat binding pr 81.3 15 0.00032 35.6 10.4 14 73-86 86-99 (169)
307 PF03999 MAP65_ASE1: Microtubu 81.1 6.7 0.00014 46.3 9.5 12 361-372 416-427 (619)
308 PF14197 Cep57_CLD_2: Centroso 81.1 8.2 0.00018 31.5 7.1 57 222-278 7-63 (69)
309 KOG3215 Uncharacterized conser 81.0 61 0.0013 32.1 17.5 30 80-109 33-62 (222)
310 KOG2751 Beclin-like protein [S 80.8 35 0.00076 37.5 13.7 57 212-268 210-266 (447)
311 TIGR01010 BexC_CtrB_KpsE polys 80.7 67 0.0015 35.0 16.6 28 130-157 171-198 (362)
312 PF07106 TBPIP: Tat binding pr 80.5 23 0.0005 34.2 11.5 15 137-151 117-131 (169)
313 cd00176 SPEC Spectrin repeats, 80.5 58 0.0013 31.5 21.7 24 166-189 81-104 (213)
314 COG1842 PspA Phage shock prote 80.4 71 0.0015 32.5 23.6 46 50-95 29-74 (225)
315 COG0497 RecN ATPase involved i 80.3 1.2E+02 0.0026 35.0 28.4 19 462-480 433-451 (557)
316 TIGR00618 sbcc exonuclease Sbc 79.7 1.8E+02 0.0039 36.7 43.8 16 312-327 460-475 (1042)
317 KOG0288 WD40 repeat protein Ti 79.6 76 0.0016 34.8 15.6 15 508-522 296-310 (459)
318 PF10267 Tmemb_cc2: Predicted 79.4 84 0.0018 34.8 16.4 12 170-181 304-315 (395)
319 PLN03229 acetyl-coenzyme A car 79.0 1.5E+02 0.0032 35.4 24.5 12 135-146 603-614 (762)
320 PRK09343 prefoldin subunit bet 78.9 52 0.0011 30.0 13.5 35 60-94 8-42 (121)
321 TIGR01010 BexC_CtrB_KpsE polys 78.5 1.1E+02 0.0023 33.5 18.3 30 79-108 169-198 (362)
322 PF07989 Microtub_assoc: Micro 77.9 13 0.00028 30.9 7.4 67 195-267 3-69 (75)
323 PF10205 KLRAQ: Predicted coil 77.2 51 0.0011 29.0 11.2 64 83-146 8-71 (102)
324 PF03904 DUF334: Domain of unk 76.5 90 0.002 31.5 17.4 39 67-105 44-82 (230)
325 PF02403 Seryl_tRNA_N: Seryl-t 76.4 54 0.0012 28.9 12.1 7 33-39 13-19 (108)
326 KOG4677 Golgi integral membran 76.2 1.3E+02 0.0029 33.3 28.0 36 154-189 313-348 (554)
327 PF11570 E2R135: Coiled-coil r 75.3 67 0.0014 29.4 14.4 13 135-147 83-95 (136)
328 TIGR02971 heterocyst_DevB ABC 75.1 1.2E+02 0.0026 32.3 18.4 16 249-264 187-202 (327)
329 PF12761 End3: Actin cytoskele 75.0 37 0.00079 33.6 10.8 7 96-102 105-111 (195)
330 TIGR02231 conserved hypothetic 74.9 36 0.00079 39.2 13.0 33 53-85 72-104 (525)
331 COG3352 FlaC Putative archaeal 74.3 55 0.0012 30.8 11.2 50 173-222 53-102 (157)
332 PF15035 Rootletin: Ciliary ro 74.1 93 0.002 30.6 19.3 36 54-89 4-39 (182)
333 KOG4807 F-actin binding protei 73.0 1.5E+02 0.0032 32.3 25.6 30 194-223 423-452 (593)
334 PF08581 Tup_N: Tup N-terminal 72.9 52 0.0011 27.6 9.8 49 230-278 7-55 (79)
335 PF10205 KLRAQ: Predicted coil 72.2 69 0.0015 28.2 10.7 61 52-112 12-72 (102)
336 PF07851 TMPIT: TMPIT-like pro 71.3 50 0.0011 35.5 11.7 21 166-186 70-90 (330)
337 PF14988 DUF4515: Domain of un 70.6 1.2E+02 0.0026 30.4 26.5 31 235-265 157-187 (206)
338 PF06810 Phage_GP20: Phage min 70.6 34 0.00075 32.6 9.5 48 64-111 18-68 (155)
339 COG4487 Uncharacterized protei 70.5 1.8E+02 0.0039 32.4 24.9 20 442-461 376-395 (438)
340 PF03915 AIP3: Actin interacti 70.2 1.9E+02 0.0041 32.4 16.9 27 132-158 209-235 (424)
341 KOG4637 Adaptor for phosphoino 69.8 1.7E+02 0.0037 31.7 19.3 143 61-206 134-283 (464)
342 PF07851 TMPIT: TMPIT-like pro 69.3 36 0.00079 36.5 10.2 56 226-281 3-58 (330)
343 PRK00409 recombination and DNA 68.8 1.9E+02 0.0041 35.3 17.5 6 403-408 761-766 (782)
344 PF15035 Rootletin: Ciliary ro 68.1 1.3E+02 0.0028 29.6 18.0 97 220-323 60-160 (182)
345 TIGR03752 conj_TIGR03752 integ 67.9 65 0.0014 36.2 12.0 22 530-551 309-330 (472)
346 KOG0247 Kinesin-like protein [ 67.8 2.3E+02 0.0051 33.6 16.7 14 259-272 630-643 (809)
347 PRK10361 DNA recombination pro 67.2 2.3E+02 0.0049 32.2 23.8 154 46-202 37-196 (475)
348 TIGR02231 conserved hypothetic 66.7 62 0.0014 37.3 12.5 22 169-190 150-171 (525)
349 PF06120 Phage_HK97_TLTM: Tail 66.2 1.9E+02 0.004 30.9 20.7 15 333-347 244-258 (301)
350 KOG1103 Predicted coiled-coil 65.8 1.9E+02 0.0042 30.9 21.2 202 61-265 88-290 (561)
351 PF10211 Ax_dynein_light: Axon 65.6 1.5E+02 0.0031 29.4 15.8 98 49-146 85-187 (189)
352 PF15456 Uds1: Up-regulated Du 65.2 1.1E+02 0.0025 28.0 11.5 30 129-158 81-110 (124)
353 PF00435 Spectrin: Spectrin re 65.0 83 0.0018 26.4 12.1 65 250-314 36-104 (105)
354 PF08172 CASP_C: CASP C termin 65.0 1.4E+02 0.0031 30.9 13.3 27 58-84 5-31 (248)
355 PRK10698 phage shock protein P 64.9 1.7E+02 0.0036 29.8 24.7 14 82-95 33-46 (222)
356 PRK15178 Vi polysaccharide exp 64.5 1.1E+02 0.0024 34.3 13.2 145 7-151 229-380 (434)
357 PF06810 Phage_GP20: Phage min 64.4 59 0.0013 31.1 9.7 40 65-104 26-68 (155)
358 PF04728 LPP: Lipoprotein leuc 64.4 67 0.0015 25.1 8.2 39 68-106 5-43 (56)
359 PF01920 Prefoldin_2: Prefoldi 63.4 1E+02 0.0022 26.8 12.8 21 126-146 9-29 (106)
360 COG3352 FlaC Putative archaeal 63.3 1.4E+02 0.003 28.3 13.1 65 224-288 41-105 (157)
361 PF14988 DUF4515: Domain of un 63.2 1.7E+02 0.0037 29.3 28.1 66 48-113 7-73 (206)
362 KOG4572 Predicted DNA-binding 63.1 3.3E+02 0.0072 32.7 30.6 37 81-117 996-1032(1424)
363 PF03915 AIP3: Actin interacti 62.6 2.6E+02 0.0057 31.3 19.1 15 22-36 151-165 (424)
364 KOG0162 Myosin class I heavy c 61.8 36 0.00078 39.8 8.8 11 644-654 1081-1091(1106)
365 COG3206 GumC Uncharacterized p 61.4 2.8E+02 0.0061 31.3 25.4 110 173-282 287-400 (458)
366 TIGR03794 NHPM_micro_HlyD NHPM 60.9 2.7E+02 0.0059 31.0 19.6 139 50-188 94-251 (421)
367 KOG3850 Predicted membrane pro 60.7 2.6E+02 0.0055 30.6 17.7 47 134-186 322-368 (455)
368 TIGR01069 mutS2 MutS2 family p 60.6 2.3E+02 0.0051 34.4 16.1 8 403-410 750-757 (771)
369 TIGR03545 conserved hypothetic 60.2 89 0.0019 36.3 12.0 107 80-190 164-270 (555)
370 PF08172 CASP_C: CASP C termin 60.1 80 0.0017 32.7 10.5 50 166-215 81-130 (248)
371 KOG0972 Huntingtin interacting 59.8 2.3E+02 0.005 29.7 16.7 22 137-158 267-288 (384)
372 PF07200 Mod_r: Modifier of ru 58.5 1.6E+02 0.0035 27.6 12.2 41 236-276 43-83 (150)
373 PF01519 DUF16: Protein of unk 58.5 60 0.0013 28.5 7.7 48 191-238 52-99 (102)
374 KOG4403 Cell surface glycoprot 58.4 2.9E+02 0.0064 30.6 18.7 14 100-113 258-271 (575)
375 COG5293 Predicted ATPase [Gene 58.2 3.1E+02 0.0067 30.7 23.6 187 5-203 259-452 (591)
376 KOG4687 Uncharacterized coiled 58.0 2.4E+02 0.0051 29.3 23.6 269 157-433 9-293 (389)
377 TIGR03752 conj_TIGR03752 integ 57.8 60 0.0013 36.5 9.5 17 638-654 438-454 (472)
378 TIGR02971 heterocyst_DevB ABC 57.8 2.6E+02 0.0057 29.8 19.9 143 50-195 53-203 (327)
379 TIGR02449 conserved hypothetic 57.7 1E+02 0.0022 24.9 8.9 62 60-121 1-62 (65)
380 PF07798 DUF1640: Protein of u 57.0 2E+02 0.0042 28.0 20.0 134 97-236 19-154 (177)
381 PRK05431 seryl-tRNA synthetase 56.9 1.1E+02 0.0024 34.3 11.8 101 23-131 3-103 (425)
382 PRK00736 hypothetical protein; 56.8 86 0.0019 25.5 8.0 51 50-100 3-53 (68)
383 cd00890 Prefoldin Prefoldin is 56.8 1.5E+02 0.0033 26.7 12.3 80 55-134 2-127 (129)
384 PF13949 ALIX_LYPXL_bnd: ALIX 56.7 2.6E+02 0.0055 29.3 30.1 227 47-274 24-288 (296)
385 PRK12705 hypothetical protein; 56.7 3.6E+02 0.0078 31.0 30.1 317 168-532 34-363 (508)
386 PRK00736 hypothetical protein; 56.4 81 0.0017 25.6 7.8 51 71-121 3-53 (68)
387 PRK04325 hypothetical protein; 56.4 87 0.0019 25.9 8.1 53 62-114 5-57 (74)
388 PF14657 Integrase_AP2: AP2-li 56.1 25 0.00055 26.0 4.5 37 649-685 1-41 (46)
389 PF06248 Zw10: Centromere/kine 55.7 4E+02 0.0087 31.3 16.9 159 88-252 8-168 (593)
390 KOG3809 Microtubule-binding pr 55.7 2.3E+02 0.0051 31.3 13.1 112 83-197 468-579 (583)
391 PF05262 Borrelia_P83: Borreli 55.5 3.7E+02 0.0079 30.8 19.3 172 90-266 181-353 (489)
392 KOG3809 Microtubule-binding pr 55.4 1.9E+02 0.0041 32.0 12.4 156 88-243 424-583 (583)
393 PF06632 XRCC4: DNA double-str 55.3 1.8E+02 0.0039 31.6 12.5 77 47-123 132-216 (342)
394 TIGR00618 sbcc exonuclease Sbc 55.1 5.4E+02 0.012 32.5 44.6 318 5-335 177-497 (1042)
395 PF05700 BCAS2: Breast carcino 55.0 2.4E+02 0.0052 28.5 16.7 113 61-174 99-220 (221)
396 TIGR03495 phage_LysB phage lys 55.0 1.8E+02 0.0039 27.1 11.4 77 151-227 20-96 (135)
397 PF01496 V_ATPase_I: V-type AT 54.9 68 0.0015 38.9 10.5 228 81-308 11-282 (759)
398 KOG3215 Uncharacterized conser 54.9 2.3E+02 0.005 28.2 17.1 168 173-349 35-202 (222)
399 KOG0998 Synaptic vesicle prote 54.9 21 0.00046 43.6 6.0 163 166-328 430-592 (847)
400 KOG4637 Adaptor for phosphoino 54.8 3.1E+02 0.0068 29.8 21.1 165 46-213 133-304 (464)
401 smart00502 BBC B-Box C-termina 54.8 1.5E+02 0.0033 26.2 14.4 99 139-237 3-103 (127)
402 PF06428 Sec2p: GDP/GTP exchan 54.5 29 0.00064 30.5 5.3 86 157-242 1-87 (100)
403 PRK02793 phi X174 lysis protei 54.5 94 0.002 25.6 8.0 51 50-100 6-56 (72)
404 PF10779 XhlA: Haemolysin XhlA 54.4 76 0.0017 25.9 7.5 51 61-111 1-51 (71)
405 KOG0260 RNA polymerase II, lar 54.3 54 0.0012 40.5 8.9 85 540-639 1516-1605(1605)
406 PF08702 Fib_alpha: Fibrinogen 53.9 2E+02 0.0043 27.2 17.0 108 76-185 25-132 (146)
407 KOG4787 Uncharacterized conser 53.3 4.1E+02 0.0089 30.7 21.1 215 127-343 330-554 (852)
408 PRK03598 putative efflux pump 53.1 3.1E+02 0.0068 29.3 15.7 123 63-189 78-203 (331)
409 KOG0998 Synaptic vesicle prote 53.1 32 0.00068 42.1 7.1 165 96-260 430-594 (847)
410 TIGR00414 serS seryl-tRNA synt 52.6 1.9E+02 0.0041 32.4 12.7 100 23-131 3-106 (418)
411 TIGR03794 NHPM_micro_HlyD NHPM 52.5 3.7E+02 0.008 29.9 20.5 148 55-202 92-251 (421)
412 smart00283 MA Methyl-accepting 52.4 2.6E+02 0.0056 28.1 34.3 236 50-288 2-261 (262)
413 KOG4807 F-actin binding protei 52.4 3.5E+02 0.0075 29.6 26.3 253 55-310 294-585 (593)
414 PF05276 SH3BP5: SH3 domain-bi 52.3 2.8E+02 0.0061 28.5 29.4 217 53-269 8-226 (239)
415 PF10368 YkyA: Putative cell-w 52.1 2.6E+02 0.0056 28.0 17.7 180 86-267 17-197 (204)
416 TIGR02449 conserved hypothetic 52.1 1E+02 0.0022 24.9 7.5 63 221-283 1-63 (65)
417 TIGR00998 8a0101 efflux pump m 52.0 3.2E+02 0.007 29.1 17.1 120 104-225 76-205 (334)
418 PF04728 LPP: Lipoprotein leuc 51.7 1.1E+02 0.0025 23.8 8.4 54 164-217 3-56 (56)
419 TIGR01612 235kDa-fam reticuloc 51.7 8.1E+02 0.018 33.6 34.0 333 3-339 878-1257(2757)
420 PF15188 CCDC-167: Coiled-coil 51.5 83 0.0018 26.8 7.3 60 134-193 3-65 (85)
421 PRK10361 DNA recombination pro 51.4 4.2E+02 0.009 30.2 25.5 166 59-232 29-194 (475)
422 TIGR02132 phaR_Bmeg polyhydrox 51.3 2.4E+02 0.0052 27.4 12.6 103 46-148 73-176 (189)
423 KOG3990 Uncharacterized conser 51.2 75 0.0016 32.4 8.1 69 53-122 226-295 (305)
424 cd00890 Prefoldin Prefoldin is 51.2 1.9E+02 0.004 26.1 12.1 88 117-204 1-127 (129)
425 PRK10803 tol-pal system protei 51.1 1E+02 0.0022 32.2 9.7 69 155-223 38-106 (263)
426 KOG4787 Uncharacterized conser 50.9 4.5E+02 0.0097 30.4 20.4 208 57-264 330-545 (852)
427 KOG3990 Uncharacterized conser 50.5 76 0.0017 32.3 8.0 69 151-220 226-295 (305)
428 PTZ00121 MAEBL; Provisional 50.4 6.9E+02 0.015 32.4 33.5 267 5-284 1538-1814(2084)
429 PF08581 Tup_N: Tup N-terminal 50.3 1.5E+02 0.0033 24.9 11.7 75 105-189 1-75 (79)
430 PF05008 V-SNARE: Vesicle tran 50.3 1.1E+02 0.0023 25.3 8.0 78 54-133 1-79 (79)
431 PLN02678 seryl-tRNA synthetase 50.2 1.2E+02 0.0027 34.1 10.8 73 59-131 33-108 (448)
432 KOG2010 Double stranded RNA bi 50.0 2.4E+02 0.0052 30.0 11.8 97 100-196 110-207 (405)
433 PF09763 Sec3_C: Exocyst compl 49.6 3.9E+02 0.0085 32.0 15.7 159 172-344 2-170 (701)
434 PRK13729 conjugal transfer pil 49.5 66 0.0014 36.2 8.3 54 65-118 68-121 (475)
435 PF04108 APG17: Autophagy prot 49.5 4.2E+02 0.009 29.6 39.9 325 14-347 8-389 (412)
436 KOG0163 Myosin class VI heavy 49.5 5.3E+02 0.012 30.9 21.1 177 87-271 840-1016(1259)
437 KOG4403 Cell surface glycoprot 49.4 4.1E+02 0.0088 29.5 18.8 151 47-199 247-425 (575)
438 PRK10803 tol-pal system protei 49.3 1.1E+02 0.0023 32.0 9.5 63 142-204 39-101 (263)
439 PF04859 DUF641: Plant protein 49.3 1.1E+02 0.0023 28.5 8.3 75 29-103 55-131 (131)
440 PF11802 CENP-K: Centromere-as 49.2 3.3E+02 0.0072 28.4 18.5 147 11-158 19-183 (268)
441 PF05700 BCAS2: Breast carcino 49.2 3E+02 0.0065 27.9 17.5 124 88-217 98-221 (221)
442 PF10779 XhlA: Haemolysin XhlA 49.1 1E+02 0.0023 25.1 7.5 51 54-104 1-51 (71)
443 PF12004 DUF3498: Domain of un 48.8 5.7 0.00012 44.9 0.0 138 141-284 353-494 (495)
444 PRK05431 seryl-tRNA synthetase 48.7 1.7E+02 0.0038 32.8 11.7 95 166-264 4-103 (425)
445 TIGR00414 serS seryl-tRNA synt 48.7 1.5E+02 0.0033 33.2 11.2 100 88-187 3-106 (418)
446 TIGR03545 conserved hypothetic 48.7 2.9E+02 0.0063 32.2 13.7 103 52-155 164-270 (555)
447 PRK00846 hypothetical protein; 48.1 1.6E+02 0.0036 24.6 8.8 58 50-107 4-61 (77)
448 cd07672 F-BAR_PSTPIP2 The F-BA 47.7 3.3E+02 0.0072 28.0 24.3 198 96-305 7-208 (240)
449 PF14282 FlxA: FlxA-like prote 47.7 1.3E+02 0.0028 26.7 8.4 58 94-151 19-80 (106)
450 TIGR02132 phaR_Bmeg polyhydrox 47.5 2.8E+02 0.006 27.0 11.4 102 170-271 71-173 (189)
451 PF01540 Lipoprotein_7: Adhesi 47.5 3.4E+02 0.0074 28.1 26.4 235 19-253 60-303 (353)
452 PF01496 V_ATPase_I: V-type AT 47.3 87 0.0019 38.0 9.7 225 60-284 11-286 (759)
453 PF08846 DUF1816: Domain of un 47.3 24 0.00052 28.7 3.3 28 650-677 10-37 (68)
454 PF04871 Uso1_p115_C: Uso1 / p 47.2 2.4E+02 0.0052 26.2 14.9 110 115-224 1-116 (136)
455 PF05064 Nsp1_C: Nsp1-like C-t 47.2 20 0.00044 32.4 3.3 87 83-169 18-104 (116)
456 PF14282 FlxA: FlxA-like prote 47.1 1.3E+02 0.0028 26.7 8.3 58 73-130 19-80 (106)
457 PF03904 DUF334: Domain of unk 47.0 3.2E+02 0.007 27.7 17.5 116 72-208 35-150 (230)
458 KOG1760 Molecular chaperone Pr 47.0 2.3E+02 0.0049 25.9 11.4 80 122-201 23-118 (131)
459 PLN02320 seryl-tRNA synthetase 46.6 1.7E+02 0.0038 33.4 11.2 100 23-131 68-167 (502)
460 KOG2077 JNK/SAPK-associated pr 46.6 5.1E+02 0.011 29.9 14.6 125 50-174 299-423 (832)
461 COG0172 SerS Seryl-tRNA synthe 46.6 2.2E+02 0.0048 31.9 11.8 102 23-131 3-105 (429)
462 PF13874 Nup54: Nucleoporin co 46.5 1.5E+02 0.0033 27.7 9.2 93 54-146 32-124 (141)
463 PF04645 DUF603: Protein of un 46.5 2.4E+02 0.0051 27.3 10.2 97 14-110 60-161 (181)
464 KOG0810 SNARE protein Syntaxin 46.4 3.9E+02 0.0085 28.4 24.9 214 10-234 35-262 (297)
465 PF07246 Phlebovirus_NSM: Phle 46.2 3E+02 0.0064 28.7 11.7 107 173-281 143-249 (264)
466 PF08826 DMPK_coil: DMPK coile 46.2 1.5E+02 0.0033 23.6 9.9 61 63-123 1-61 (61)
467 PF01540 Lipoprotein_7: Adhesi 46.0 3.6E+02 0.0078 27.9 23.2 204 54-274 92-303 (353)
468 PRK13729 conjugal transfer pil 45.8 87 0.0019 35.3 8.5 57 51-107 68-124 (475)
469 PLN02678 seryl-tRNA synthetase 45.7 1.1E+02 0.0024 34.6 9.4 76 185-264 33-108 (448)
470 PF10458 Val_tRNA-synt_C: Valy 45.3 1.6E+02 0.0034 23.6 8.2 52 70-121 1-66 (66)
471 PF15188 CCDC-167: Coiled-coil 45.1 94 0.002 26.5 6.7 58 164-221 5-65 (85)
472 PF12072 DUF3552: Domain of un 45.0 3.3E+02 0.007 27.1 22.7 149 49-205 40-188 (201)
473 PF12004 DUF3498: Domain of un 44.6 7.3 0.00016 44.1 0.0 141 68-208 350-495 (495)
474 PTZ00464 SNF-7-like protein; P 44.2 3.5E+02 0.0076 27.3 19.2 145 64-209 16-174 (211)
475 PF13949 ALIX_LYPXL_bnd: ALIX 44.2 4E+02 0.0086 27.9 30.3 244 83-328 9-286 (296)
476 PRK03598 putative efflux pump 44.1 4.3E+02 0.0093 28.2 15.1 115 132-246 77-204 (331)
477 PRK01203 prefoldin subunit alp 44.1 2.2E+02 0.0049 26.3 9.5 94 83-178 3-127 (130)
478 PF13874 Nup54: Nucleoporin co 44.0 1.1E+02 0.0025 28.5 8.0 92 160-251 33-124 (141)
479 KOG0992 Uncharacterized conser 43.7 5.4E+02 0.012 29.3 39.0 312 3-324 103-419 (613)
480 PF02841 GBP_C: Guanylate-bind 43.3 4.3E+02 0.0092 28.0 23.0 187 82-268 98-297 (297)
481 KOG0260 RNA polymerase II, lar 43.1 1.5E+02 0.0032 37.1 10.1 103 522-639 1420-1522(1605)
482 KOG2685 Cystoskeletal protein 43.0 5.1E+02 0.011 28.7 35.4 280 55-334 51-395 (421)
483 PF10368 YkyA: Putative cell-w 42.6 3.6E+02 0.0078 27.0 18.4 180 51-232 17-197 (204)
484 PF07544 Med9: RNA polymerase 42.6 1.2E+02 0.0026 25.6 7.1 72 46-117 7-82 (83)
485 PF04645 DUF603: Protein of un 42.5 2.3E+02 0.005 27.3 9.5 97 7-103 60-161 (181)
486 PTZ00464 SNF-7-like protein; P 42.4 3.7E+02 0.0081 27.1 18.6 144 50-195 16-174 (211)
487 PRK10636 putative ABC transpor 42.1 1.6E+02 0.0034 35.0 10.6 76 62-137 552-634 (638)
488 PRK00286 xseA exodeoxyribonucl 42.1 5.4E+02 0.012 28.8 16.7 124 88-211 261-391 (438)
489 COG4487 Uncharacterized protei 41.8 5.4E+02 0.012 28.8 23.9 178 83-271 38-221 (438)
490 smart00806 AIP3 Actin interact 41.5 5.5E+02 0.012 28.7 25.7 192 50-241 83-331 (426)
491 PF08657 DASH_Spc34: DASH comp 41.5 1.3E+02 0.0028 31.3 8.5 58 50-107 178-259 (259)
492 PF07058 Myosin_HC-like: Myosi 41.4 4.6E+02 0.01 27.8 17.0 120 54-173 2-159 (351)
493 PF07246 Phlebovirus_NSM: Phle 41.1 4.1E+02 0.0089 27.6 11.8 97 54-152 143-239 (264)
494 PRK14011 prefoldin subunit alp 41.0 3.1E+02 0.0068 25.8 13.8 95 57-151 1-138 (144)
495 PF05008 V-SNARE: Vesicle tran 40.9 1.8E+02 0.0039 23.9 7.9 78 68-147 1-79 (79)
496 PF05262 Borrelia_P83: Borreli 40.8 6.1E+02 0.013 29.0 19.0 172 76-249 181-354 (489)
497 PF09486 HrpB7: Bacterial type 40.7 3.4E+02 0.0073 26.1 19.6 133 47-186 10-150 (158)
498 KOG4005 Transcription factor X 40.5 1.2E+02 0.0027 30.6 7.7 66 198-263 82-147 (292)
499 PF10458 Val_tRNA-synt_C: Valy 40.3 1.5E+02 0.0033 23.7 7.0 58 134-191 2-66 (66)
500 KOG2010 Double stranded RNA bi 40.3 4E+02 0.0086 28.5 11.6 102 2-112 105-207 (405)
No 1
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=100.00 E-value=2.5e-56 Score=462.13 Aligned_cols=196 Identities=38% Similarity=0.578 Sum_probs=189.7
Q ss_pred CcccCCchhHHHHHHhhhccchhhhhhhHHHHhhcCCchhhHHHhhhCCCCCCCCCCCcccchhhhHHHHHHHHhhhhcc
Q 005229 358 ENLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAMSGFYPPHSREGDLEFDVSIVRRSCILLLEQLSTV 437 (707)
Q Consensus 358 ~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~al~~a~dpa~lVLd~~~~~~~~~~~~~~~~~~~~~~r~~c~~lle~l~~~ 437 (707)
.|..|||+||+.||++|.++..++|+|+|+||++|||||+||||+|+|||+++.+. +++.++.++||+||+|||+|+.+
T Consensus 18 lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~cilLLE~L~~~ 96 (290)
T PF07899_consen 18 LCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRACILLLEQLMRI 96 (290)
T ss_pred HHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHHHHHHHHHhhc
Confidence 35579999999999999999999999999999999999999999999999998877 66788999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhh-hhcccCcHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhhcchhhHHHhhhCCccc
Q 005229 438 EPEINAQVRDEAMKVAGEWKKKM-RVAVENSLEVLGFLHLLAAYRLAPAFDREELESLLCIVAQHRQTPKLRRTLGFADK 516 (707)
Q Consensus 438 ~~~~~~~v~~~A~~~A~~Wk~~~-~~~~~~~l~a~~fl~~l~~fgi~~~f~~~el~~l~~~~~~~~~~~~l~~~lgl~~k 516 (707)
+|.++|+|+++|+++|.+||++| +.+++++++||||||||++|||+++||.|||++||..|++|+|+|+||++|||++|
T Consensus 97 ~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~sLgl~~k 176 (290)
T PF07899_consen 97 SPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCRSLGLSDK 176 (290)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHHHcCchhh
Confidence 99999999999999999999999 77788999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhcCCcccccccccccCCCCCCCCCCCCCC
Q 005229 517 VPGLQCSTTAEGRSAPSMLVGTSAPLNQSVSSPMNLPQ 554 (707)
Q Consensus 517 ~~~~i~~li~~g~~~~a~~~~~~~~l~~~~~p~~~~~s 554 (707)
|||||++||++|+||+||+|.+.|+|.++|||++.+++
T Consensus 177 ~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~ 214 (290)
T PF07899_consen 177 MPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKS 214 (290)
T ss_pred hHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999886
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.83 E-value=4.3e-18 Score=210.56 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHH----HHhhhhhhhhhccC----CCCCcccCCchhHHHHHH
Q 005229 301 SLKKGLEDRLQDLELKEREFEKRVKEFELREKELDSIRKA----VEDRSKNLLLQVKI----KDPENLTSSGRYLQFLLN 372 (707)
Q Consensus 301 ~le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~ 372 (707)
.++..+.....++..++++|..++.+|+.++.+++.+... ..++......+..+ ...|+.+++. |+
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~------In 1019 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDK------IN 1019 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 5788888889999999999999999999999999998774 34444444444433 2233434443 77
Q ss_pred hhhccchhhhhhhHHHHhhcCCchhhHHHhhhCCCCCCCCCCCcccchhhhHHHHHHHHhhhhccCCCCCHHHHHHHHHH
Q 005229 373 QHLQKHDSIFCKVFDTIKSARDPALLVLHAMSGFYPPHSREGDLEFDVSIVRRSCILLLEQLSTVEPEINAQVRDEAMKV 452 (707)
Q Consensus 373 ~~~~~~~~~~~e~~~al~~a~dpa~lVLd~~~~~~~~~~~~~~~~~~~~~~r~~c~~lle~l~~~~~~~~~~v~~~A~~~ 452 (707)
.+|+. ++..+.+. +-|.|+|+-..+||..|......|.+..+.+ |..|
T Consensus 1020 ~~F~~---if~~L~~G-----G~a~L~l~~~dd~l~~Giei~a~ppgK~~~~------l~~L------------------ 1067 (1163)
T COG1196 1020 ENFSE---IFKELFGG-----GTAELELTEPDDPLTAGIEISARPPGKKLQS------LSLL------------------ 1067 (1163)
T ss_pred HHHHH---HHHHhCCC-----CeeEEEeCCCCchhhcCcEEEEECCCCCccc------hhhc------------------
Confidence 77776 67777663 5899999999988877765555555554444 5566
Q ss_pred HHHHHHhhhhcccCcHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhhcchh
Q 005229 453 AGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDREELESLLCIVAQHRQT 504 (707)
Q Consensus 453 A~~Wk~~~~~~~~~~l~a~~fl~~l~~fgi~~~f~~~el~~l~~~~~~~~~~ 504 (707)
+||+.+|.|++||+.|..|.++|+|=.|||...++.+...+.+
T Consensus 1068 ---------SGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~ 1110 (1163)
T COG1196 1068 ---------SGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVA 1110 (1163)
T ss_pred ---------CCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHH
Confidence 9999999999999999999999999999999998888765543
No 3
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.79 E-value=2e-19 Score=143.97 Aligned_cols=61 Identities=69% Similarity=1.230 Sum_probs=57.8
Q ss_pred ccceeeeEcCCCceEEEEecCCCCcccccCCCCcHHHHHHHHHHHHHHccCCCCCCCCCCc
Q 005229 637 MHFRGVRQRPWGKWAAEIRDPKKAARIWLGTFDTAEAAALAYDEAALRFKGRKAKLNFPER 697 (707)
Q Consensus 637 s~~rGV~~~~~g~w~a~i~~~~~~~~~~lG~f~t~e~Aa~ayd~aa~~~~g~~~~~nfp~~ 697 (707)
|+|+||+++++|+|+|+|+++..|+++|||+|+|+|+||.|||.+++.+||.++.+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899998888899999999997777999999999999999999999999999999999985
No 4
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=8.8e-15 Score=165.75 Aligned_cols=236 Identities=17% Similarity=0.190 Sum_probs=224.4
Q ss_pred hhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 14 QKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQE 93 (707)
Q Consensus 14 ~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~ 93 (707)
...+..++.+|+++.|+|.+++.++..++... +...+..+.+++.+++.+|.+...-++.....+..|++++.+..
T Consensus 707 ~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~----~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~ 782 (1174)
T KOG0933|consen 707 SQKFRDLKQQLELKLHELALLEKRLEQNEFHK----LLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAK 782 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 44567789999999999999999999999999 89999999999999999999999999999999999999999998
Q ss_pred HH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005229 94 KQ----LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELL 169 (707)
Q Consensus 94 ~e----l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~l 169 (707)
.+ +.+++++|+.++..+++....++..+.+++.++.+.++++.++...+.++...+..+..+..++..++..+...
T Consensus 783 ~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~ 862 (1174)
T KOG0933|consen 783 ANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKV 862 (1174)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 76 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHh
Q 005229 170 QGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEE 249 (707)
Q Consensus 170 e~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~E 249 (707)
+..+..+..+|.+..+.+..++.++..+....+....++.....+++++++++..+..+.....++++.+.++++=+..|
T Consensus 863 ~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~e 942 (1174)
T KOG0933|consen 863 EKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDE 942 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred hhhh
Q 005229 250 LISK 253 (707)
Q Consensus 250 le~l 253 (707)
..-+
T Consensus 943 k~~f 946 (1174)
T KOG0933|consen 943 KRLF 946 (1174)
T ss_pred HHhh
Confidence 4433
No 5
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.77 E-value=7.5e-19 Score=141.85 Aligned_cols=63 Identities=68% Similarity=1.271 Sum_probs=59.7
Q ss_pred cceeeeEcCCCceEEEEecCCCCcccccCCCCcHHHHHHHHHHHHHHccCCCCCCCCCCcccc
Q 005229 638 HFRGVRQRPWGKWAAEIRDPKKAARIWLGTFDTAEAAALAYDEAALRFKGRKAKLNFPERVQA 700 (707)
Q Consensus 638 ~~rGV~~~~~g~w~a~i~~~~~~~~~~lG~f~t~e~Aa~ayd~aa~~~~g~~~~~nfp~~~~~ 700 (707)
+|+||+++++|+|.|+|+++..|+++|||+|+|+|+||.|||.|++.+||.++.+|||.+.|+
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 499998888999999999987788999999999999999999999999999999999999886
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.71 E-value=1.1e-14 Score=182.39 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHH----HHhhhhhhhhhccC----CCCCcccCCchhHHHH
Q 005229 299 FDSLKKGLEDRLQDLELKEREFEKRVKEFELREKELDSIRKA----VEDRSKNLLLQVKI----KDPENLTSSGRYLQFL 370 (707)
Q Consensus 299 ~~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~ 370 (707)
...+...+.....+|...++++..++.+|+.+..++..+... ...+......+..+ ...|+.+++.
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~------ 1026 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEA------ 1026 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 456777888888888999999999999999988888887663 33333333332222 1122222222
Q ss_pred HHhhhccchhhhhhhHHHHhhcCCchhhHHHhhhCCCCCCCCCCCcccchhhhHHHHHHHHhhhhccCCCCCHHHHHHHH
Q 005229 371 LNQHLQKHDSIFCKVFDTIKSARDPALLVLHAMSGFYPPHSREGDLEFDVSIVRRSCILLLEQLSTVEPEINAQVRDEAM 450 (707)
Q Consensus 371 ~~~~~~~~~~~~~e~~~al~~a~dpa~lVLd~~~~~~~~~~~~~~~~~~~~~~r~~c~~lle~l~~~~~~~~~~v~~~A~ 450 (707)
|+.+|.. ++..+. -+-|.|+|+...++|..+......+.+....+ +..|
T Consensus 1027 ~~~~f~~---~~~~l~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l---------------- 1075 (1164)
T TIGR02169 1027 INENFNE---IFAELS------GGTGELILENPDDPFAGGLELSAKPKGKPVQR------LEAM---------------- 1075 (1164)
T ss_pred HHHHHHH---HHHHHh------CCeEEEEecCCCCcccCCeEEEEEcCCCCCCc------chhc----------------
Confidence 4555544 444444 25577777654555433221111111100000 1222
Q ss_pred HHHHHHHHhhhhcccCcHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhhcchh
Q 005229 451 KVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDREELESLLCIVAQHRQT 504 (707)
Q Consensus 451 ~~A~~Wk~~~~~~~~~~l~a~~fl~~l~~fgi~~~f~~~el~~l~~~~~~~~~~ 504 (707)
+||+.++-+++|++.+..|..+|.+=.||++..++.+...+.+
T Consensus 1076 -----------Sgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~ 1118 (1164)
T TIGR02169 1076 -----------SGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVA 1118 (1164)
T ss_pred -----------CcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHH
Confidence 7778899999999999888999998888888777777654433
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.63 E-value=6.8e-13 Score=166.39 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=19.8
Q ss_pred hcccCcHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 005229 462 VAVENSLEVLGFLHLLAAYRLAPAFDREELESLL 495 (707)
Q Consensus 462 ~~~~~~l~a~~fl~~l~~fgi~~~f~~~el~~l~ 495 (707)
++|...+-++++++.+..++.++.+=.||...-+
T Consensus 1091 S~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~l 1124 (1179)
T TIGR02168 1091 SGGEKALTALALLFAIFKVKPAPFCILDEVDAPL 1124 (1179)
T ss_pred CccHHHHHHHHHHHHHHccCCCCeEEecCccccc
Confidence 4555566777777665556666655555544333
No 8
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.4e-11 Score=141.42 Aligned_cols=167 Identities=15% Similarity=0.180 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHH-hhhhhhhhhc---cC----CCCCcccCC
Q 005229 292 LKEKETHFDSLKKGLEDRLQDLELKEREFEKRVKEFELREKELDSIRKAVE-DRSKNLLLQV---KI----KDPENLTSS 363 (707)
Q Consensus 292 ~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~~~~~~~~-~~~~~~~~~~---~~----~~~~~~~~~ 363 (707)
+++|...+. +++.|++....|+.. ..|+.+..-|+.++ +...-..++ .|..+-.+.. .+ ..-|+..++
T Consensus 925 y~~L~~~y~-L~~kl~e~~~~l~~~-~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~ 1000 (1141)
T KOG0018|consen 925 YSGLPREYK-LQQKLEEKQSVLNRI-APNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFE 1000 (1141)
T ss_pred cccccHHHH-HHHHHHHHHHHHHHh-CcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555 888888888888888 77888888887776 444333333 2322221111 11 112222233
Q ss_pred chhHHHHHHhhhccchhhhhhhHHHHhhcCCchhhHHHhhhCCCCCCCCCCCcccchhhhHHHHHHHHhhhhccCCCCCH
Q 005229 364 GRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAMSGFYPPHSREGDLEFDVSIVRRSCILLLEQLSTVEPEINA 443 (707)
Q Consensus 364 ~~~l~~~~~~~~~~~~~~~~e~~~al~~a~dpa~lVLd~~~~~~~~~~~~~~~~~~~~~~r~~c~~lle~l~~~~~~~~~ 443 (707)
. |+.+.. .|..++. .+..-|-|+||..++||..|..-...+.+....- |+.|
T Consensus 1001 ~------va~~Id---~IYK~Lt----nt~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~------m~~L--------- 1052 (1141)
T KOG0018|consen 1001 H------VADNID---RIYKELT----NTEGQAYLGLENPEEPYLDGIKYHCMPPGKRFRP------MDNL--------- 1052 (1141)
T ss_pred H------HHHHHH---HHHHHhc----ccccceeecCCCCCcchhcCccccccCCccccCc------hhhc---------
Confidence 2 555543 4777777 4448899999999999987665433333333222 6666
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCcHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhhcchhhHHH
Q 005229 444 QVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDREELESLLCIVAQHRQTPKLR 508 (707)
Q Consensus 444 ~v~~~A~~~A~~Wk~~~~~~~~~~l~a~~fl~~l~~fgi~~~f~~~el~~l~~~~~~~~~~~~l~ 508 (707)
+||+..+.|||+|+.+-+|.++|+|=.|||+.-++...--+.|.=+|
T Consensus 1053 ------------------SGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr 1099 (1141)
T KOG0018|consen 1053 ------------------SGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR 1099 (1141)
T ss_pred ------------------CccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh
Confidence 88899999999999999999999999999998887776666655444
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.47 E-value=5.2e-10 Score=140.46 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIE 111 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~ 111 (707)
.....++..+...+..+..++..+..++..++.++......+..++..+..++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 282 (1164)
T TIGR02169 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK 282 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444444444333333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.41 E-value=1.5e-09 Score=136.50 Aligned_cols=244 Identities=18% Similarity=0.214 Sum_probs=121.2
Q ss_pred HhhhhhhHHHHHHHHhhhHhhHHHHHH--HhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 10 MGLGQKRIGEFNCELELKENELNSLSV--SLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQR 87 (707)
Q Consensus 10 ~~~~~~~~~~~~~eL~l~e~eL~~~~~--el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~ 87 (707)
+..+.+.+.++..++.-++.+.+.+++ ++...+..++..+...++..+..++..+...+..+..++..+..++..++.
T Consensus 181 L~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1179)
T TIGR02168 181 LERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTA 260 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444432 222223333334444555555566666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005229 88 SIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLE 167 (707)
Q Consensus 88 ~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~ 167 (707)
++..++..+..+...+..++..+..+...+...+..+..+..++..++.++..+..++..+...+..+..++.....++.
T Consensus 261 ~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 340 (1179)
T TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555555555555555555555555555555555555555555555555555555555555444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhH
Q 005229 168 LLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKK 247 (707)
Q Consensus 168 ~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~ 247 (707)
.+..++..+...+...+..+......+..+...+...+.++..+..++..+..++..+...+..+..++..+..++..+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 420 (1179)
T TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred Hhhhhh
Q 005229 248 EELISK 253 (707)
Q Consensus 248 ~Ele~l 253 (707)
.++..+
T Consensus 421 ~~~~~~ 426 (1179)
T TIGR02168 421 QEIEEL 426 (1179)
T ss_pred HHHHHH
Confidence 333333
No 11
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1e-09 Score=127.37 Aligned_cols=389 Identities=15% Similarity=0.194 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005229 58 QKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ---LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLC 134 (707)
Q Consensus 58 ~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e---l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~l 134 (707)
.-.+..+...+..+-..+..+..+|..+++.+.....+ +.++++.|+.++++++++... ..+...+..++..++.+
T Consensus 819 ~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~-~~Kk~~i~~lq~~i~~i 897 (1293)
T KOG0996|consen 819 ENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEK-AAKKARIKELQNKIDEI 897 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHh
Confidence 33333333334444444444444444444443222221 555556666666666666311 11133334444444333
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 135 ET-KLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRK 213 (707)
Q Consensus 135 e~-el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ 213 (707)
-. .+...+.+++....+++.+..++....-.+......+..++..+.+++.++....++++.+..++...+....+++.
T Consensus 898 ~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~ 977 (1293)
T KOG0996|consen 898 GGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEK 977 (1293)
T ss_pred hchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 22 23334445555555555555555555555666666677777777777777777777777777777777777788888
Q ss_pred HHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHH-H----
Q 005229 214 YIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIV-Y---- 288 (707)
Q Consensus 214 ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~-~---- 288 (707)
++.+...-+..+...+..+.+.++.+.+....++.++-.++..++....++...+......+..+..+.-|... .
T Consensus 978 ~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~ 1057 (1293)
T KOG0996|consen 978 EYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQI 1057 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhcccc
Confidence 88888888888888888888888888888877777544478888888888887777777776666655444210 0
Q ss_pred ---HHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh----HHHHHHHHHHHHhhhhhhhhhccC----C
Q 005229 289 ---LKELKEKETHF--DSLKKGLEDRLQDLELKEREFEKRVKEFELR----EKELDSIRKAVEDRSKNLLLQVKI----K 355 (707)
Q Consensus 289 ---~~~~~el~~~~--~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~----e~~l~~~~~~~~~~~~~~~~~~~~----~ 355 (707)
....++++... ..+-..|.-....++.+..+.-..+.+|..+ .++...+..+...|+.--..-..+ -
T Consensus 1058 ~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~Rl 1137 (1293)
T KOG0996|consen 1058 ELDVESPEELEAEMLEDNINEKIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRL 1137 (1293)
T ss_pred ccccCChHHHHhhhcHhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222 1122233334444444434455566777544 444444555554444421110000 0
Q ss_pred CCCcccCCchhHHHHHHhhhccchhhhhhhHHHHhhcCCchhhHHHhhhCCCCCCCCCCCcccchhhhHHHHHHHHhhhh
Q 005229 356 DPENLTSSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLHAMSGFYPPHSREGDLEFDVSIVRRSCILLLEQLS 435 (707)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~al~~a~dpa~lVLd~~~~~~~~~~~~~~~~~~~~~~r~~c~~lle~l~ 435 (707)
+.| |.| ..||..++++ ++.=+... +-|.|=|=-=-+||..|..-...
T Consensus 1138 dEF---m~g---f~~Is~kLke---mYQmIT~G-----GdAeLElVDslDPFseGV~FSVr------------------- 1184 (1293)
T KOG0996|consen 1138 DEF---MAG---FNIISMKLKE---MYQMITLG-----GDAELELVDSLDPFSEGVMFSVR------------------- 1184 (1293)
T ss_pred HHH---HHH---HHHHHHHHHH---HHHHHhcC-----CcceeEeeccCCCcccCceEEee-------------------
Confidence 111 222 2234444443 21111111 22222111112334333221111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhh-hcccCcHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 005229 436 TVEPEINAQVRDEAMKVAGEWKKKMR-VAVENSLEVLGFLHLLAAYRLAPAFDREELESLL 495 (707)
Q Consensus 436 ~~~~~~~~~v~~~A~~~A~~Wk~~~~-~~~~~~l~a~~fl~~l~~fgi~~~f~~~el~~l~ 495 (707)
+| -..||.--. +||+..|-.|||.+.|--|.+.|.|=-|||+.-+
T Consensus 1185 --Pp-------------KKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAAL 1230 (1293)
T KOG0996|consen 1185 --PP-------------KKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAAL 1230 (1293)
T ss_pred --Cc-------------hhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhh
Confidence 11 145775433 6778999999999999999999999999997543
No 12
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=8.9e-09 Score=117.34 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=45.8
Q ss_pred hcccCcHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhhcchhhHHHhhhCCccchhhhHHHHhhcCC
Q 005229 462 VAVENSLEVLGFLHLLAAYRLAPAFDREELESLLCIVAQHRQTPKLRRTLGFADKVPGLQCSTTAEGR 529 (707)
Q Consensus 462 ~~~~~~l~a~~fl~~l~~fgi~~~f~~~el~~l~~~~~~~~~~~~l~~~lgl~~k~~~~i~~li~~g~ 529 (707)
+||..++-|+++++.|+.-.++|+|=.|||+.-++ +++|.|+ .++|..|-.+.|
T Consensus 1099 SGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLD--aQyR~aV------------a~lIkelS~~aQ 1152 (1200)
T KOG0964|consen 1099 SGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALD--AQYRTAV------------ADLIKELSDSAQ 1152 (1200)
T ss_pred cCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhcc--HHHHHHH------------HHHHHHHhhccc
Confidence 78889999999999999999999999999987666 5666665 588888877733
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.27 E-value=3.5e-08 Score=123.04 Aligned_cols=272 Identities=21% Similarity=0.243 Sum_probs=151.6
Q ss_pred HhhhhhhHHHHHHHHhhhHhhHHHHH--HHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 10 MGLGQKRIGEFNCELELKENELNSLS--VSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQR 87 (707)
Q Consensus 10 ~~~~~~~~~~~~~eL~l~e~eL~~~~--~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~ 87 (707)
++.++..+.++.++++-++.+-+.+. ..+......++..++..++..+..++..+.+.+..+..++..+..++...+.
T Consensus 188 l~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 267 (1163)
T COG1196 188 LERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEK 267 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443332 2333344445555567777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005229 88 SIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLE 167 (707)
Q Consensus 88 ~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~ 167 (707)
.|..++.++.++..++..++...-.....+..++.++..+..+++.+..++......+...+..+......+...+....
T Consensus 268 ~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1163)
T COG1196 268 EIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLE 347 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 77777777777777777776666666666777777777777777777777666666666666666666666555433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhH
Q 005229 168 LLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKK 247 (707)
Q Consensus 168 ~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~ 247 (707)
.+......+...+...+..+.. ..+.....++.+++++..+..++..+.+++..++.+++.++.+++.+...+..+.
T Consensus 348 e~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~ 424 (1163)
T COG1196 348 ELEQLLAELEEAKEELEEKLSA---LLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLK 424 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333331 1222333334444444444444555555555555555555555555555555555
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhH
Q 005229 248 EELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTR 284 (707)
Q Consensus 248 ~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~ 284 (707)
.++..+..++.....+++..+.++..++..++.+...
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (1163)
T COG1196 425 EELKELEAELEELQTELEELNEELEELEEQLEELRDR 461 (1163)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444454544444444444444444
No 14
>PHA00280 putative NHN endonuclease
Probab=99.26 E-value=7.2e-12 Score=112.57 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=53.2
Q ss_pred ccccCCCCCccceeee-EcCCCceEEEEecCCCCcccccCCCCcHHHHHHHHHHHHHHccCCCCCC
Q 005229 628 GLLAGNVSRMHFRGVR-QRPWGKWAAEIRDPKKAARIWLGTFDTAEAAALAYDEAALRFKGRKAKL 692 (707)
Q Consensus 628 ~~~~~~~~~s~~rGV~-~~~~g~w~a~i~~~~~~~~~~lG~f~t~e~Aa~ayd~aa~~~~g~~~~~ 692 (707)
.....+.++|||+||+ ....|||+|+|+..++ +++||+|+|+|+|+.||+ ++..+||.||..
T Consensus 58 N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK--~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~ 120 (121)
T PHA00280 58 NMKTPKSNTSGLKGLSWSKEREMWRGTVTAEGK--QHNFRSRDLLEVVAWIYR-TRRELHGQFARF 120 (121)
T ss_pred ccCCCCCCCCCCCeeEEecCCCeEEEEEEECCE--EEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence 3345667899999994 5678999999987776 999999999999999997 788999998864
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=1.5e-07 Score=118.78 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=18.9
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHh
Q 005229 6 VEKIMGLGQKRIGEFNCELELKENELNSLSVSL 38 (707)
Q Consensus 6 ~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el 38 (707)
+++.+..+..++..+..+++..+..+..+..++
T Consensus 749 l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~ 781 (1311)
T TIGR00606 749 LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEE 781 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455555555666666666666655555555544
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.24 E-value=2e-07 Score=116.53 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 119 DKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDS 189 (707)
Q Consensus 119 ~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~ 189 (707)
..+..+..+..++..++..+..+..+-...+..+..+...+...++++..+......++..|.+++..+..
T Consensus 961 ~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~ 1031 (1930)
T KOG0161|consen 961 AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLER 1031 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444444444444444444444444444444444444
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.20 E-value=2.2e-07 Score=116.26 Aligned_cols=90 Identities=18% Similarity=0.338 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHH
Q 005229 184 EQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKE 263 (707)
Q Consensus 184 e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~ 263 (707)
+..+..+.....++...+..++.++..+..++......+..++..+..++..+..+..+++.-+..+...++....+..+
T Consensus 1054 ~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~e 1133 (1930)
T KOG0161|consen 1054 QESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEE 1133 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444455555555555554444444444444444444444444444444444444444444444
Q ss_pred HHHHHHhhhH
Q 005229 264 VELKKNQLNL 273 (707)
Q Consensus 264 le~k~~ele~ 273 (707)
+++++.++++
T Consensus 1134 le~l~~~Lee 1143 (1930)
T KOG0161|consen 1134 LEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 18
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.17 E-value=8.5e-07 Score=98.53 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=41.0
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 246 KKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVK 325 (707)
Q Consensus 246 l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~ 325 (707)
.+.+++.+..++..+.+.+...+.+-..++.++.....|.. .++.+....+..++..|.-...+-+.+.........
T Consensus 369 ~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~---vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~ 445 (546)
T PF07888_consen 369 DKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNR---VQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLE 445 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555556655555444421 234444444555555444444333333333333333
Q ss_pred hHHHhHHHHHH
Q 005229 326 EFELREKELDS 336 (707)
Q Consensus 326 E~e~~e~~l~~ 336 (707)
.+..++.+++.
T Consensus 446 yi~~Le~r~~~ 456 (546)
T PF07888_consen 446 YIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 19
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.16 E-value=3.9e-07 Score=106.54 Aligned_cols=265 Identities=17% Similarity=0.269 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005229 53 KCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLM 132 (707)
Q Consensus 53 ~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele 132 (707)
.++.+..-+..+-..++.....+....++|..+++++.+.+..+..++. ++.+...+..+...+. =.-.-
T Consensus 208 ~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~-~e~~~~~l~~Lk~k~~---------W~~V~ 277 (1074)
T KOG0250|consen 208 QLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ-LEDLKENLEQLKAKMA---------WAWVN 277 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---------HHHHH
Confidence 3455555555555555555566666666666666555555544332221 1112222222211110 00011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 133 LCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIR 212 (707)
Q Consensus 133 ~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~ 212 (707)
....++..+...+...+..+..+..+++.....+.+++..+.+++.++..+..+.+..+.+++...+.+..+..++.+.+
T Consensus 278 ~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~ 357 (1074)
T KOG0250|consen 278 EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLK 357 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222222222222222222222222233333333334444444444444444444444444444444444444
Q ss_pred HHHHHHhcChhhHHHhHHHHHHHHHHHhhhc-hhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHh
Q 005229 213 KYIEELNQDPASKDKELRFVQQSIEECSKEI-PGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKE 291 (707)
Q Consensus 213 ~ei~~l~~eie~~~~el~~~~~~le~l~~El-~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~ 291 (707)
.++....+.+...+..+..+++.+..+.++. ..+..++.+.+.+++.+.++++..+..+..+..++..+......-..+
T Consensus 358 ~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee 437 (1074)
T KOG0250|consen 358 EEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE 437 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333333333333333333333333333333 333333333333333333333333333333333333332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005229 292 LKEKETHFDSLKKGLEDRLQDLELKEREFEKRVKEF 327 (707)
Q Consensus 292 ~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E~ 327 (707)
...++..+..+.+.|+....+|+.+......++.-|
T Consensus 438 ~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~F 473 (1074)
T KOG0250|consen 438 KEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAF 473 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc
Confidence 233333455566666666666666666555555544
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=99.12 E-value=1.8e-06 Score=105.62 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=10.2
Q ss_pred hhHHHHHHHHhhhHhhHHHHHHHh
Q 005229 15 KRIGEFNCELELKENELNSLSVSL 38 (707)
Q Consensus 15 ~~~~~~~~eL~l~e~eL~~~~~el 38 (707)
.++..+..++..++.++..++..+
T Consensus 200 ~~~~~l~~ei~~l~~e~~~l~~~~ 223 (880)
T PRK03918 200 KELEEVLREINEISSELPELREEL 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=99.11 E-value=2e-06 Score=105.13 Aligned_cols=6 Identities=33% Similarity=0.235 Sum_probs=2.4
Q ss_pred HHHHHH
Q 005229 468 LEVLGF 473 (707)
Q Consensus 468 l~a~~f 473 (707)
.-++||
T Consensus 796 ~~~la~ 801 (880)
T PRK03918 796 ALGLAF 801 (880)
T ss_pred HHHHHH
Confidence 334444
No 22
>PRK01156 chromosome segregation protein; Provisional
Probab=99.09 E-value=2.6e-06 Score=104.33 Aligned_cols=8 Identities=13% Similarity=0.235 Sum_probs=3.1
Q ss_pred CCCHHHHH
Q 005229 485 AFDREELE 492 (707)
Q Consensus 485 ~f~~~el~ 492 (707)
.+|.+...
T Consensus 837 ~lD~~~~~ 844 (895)
T PRK01156 837 FLDEDRRT 844 (895)
T ss_pred cCCHHHHH
Confidence 33444333
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.09 E-value=1.1e-06 Score=111.24 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=11.4
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHhhHHH
Q 005229 6 VEKIMGLGQKRIGEFNCELELKENELNS 33 (707)
Q Consensus 6 ~~~~~~~~~~~~~~~~~eL~l~e~eL~~ 33 (707)
++..+.........+...++..+..++.
T Consensus 700 L~~~~~~~p~~~~~~~~~~~~~~~~~e~ 727 (1311)
T TIGR00606 700 LQSKLRLAPDKLKSTESELKKKEKRRDE 727 (1311)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 3334444333344444444444444333
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.07 E-value=3.3e-06 Score=98.77 Aligned_cols=182 Identities=15% Similarity=0.184 Sum_probs=88.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 5 RVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGE 84 (707)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~ 84 (707)
.+++-|+.-...+..+.+.+..++.++..++.++....... .-+...++.++......+++++.+..++.....++..
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r--~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~ 305 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADR--DRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEA 305 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777787777778888877777665444432 1133344444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005229 85 AQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEE 164 (707)
Q Consensus 85 le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~ 164 (707)
+...+.............|..++..+...+.....++.+...+..+++.....+......+...+.....+..++..+..
T Consensus 306 ~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d 385 (775)
T PF10174_consen 306 LQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRD 385 (775)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444443344333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 165 KLELLQGKVRLHENEVESLEQKLD 188 (707)
Q Consensus 165 ~l~~le~el~~~~~eL~~~e~el~ 188 (707)
.++..+.++..+..+|++++..+.
T Consensus 386 ~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 386 MLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.07 E-value=7e-06 Score=96.34 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=40.6
Q ss_pred hcccCcHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhhcchhhHHHhhhCCccchhhhHHHHhhcC
Q 005229 462 VAVENSLEVLGFLHLLAAYRLAPAFDREELESLLCIVAQHRQTPKLRRTLGFADKVPGLQCSTTAEG 528 (707)
Q Consensus 462 ~~~~~~l~a~~fl~~l~~fgi~~~f~~~el~~l~~~~~~~~~~~~l~~~lgl~~k~~~~i~~li~~g 528 (707)
+||+.|+...+||+-|----=.|+.-.||.+=|.++|.+. .+.. -+|+...+.|
T Consensus 991 SGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRK-i~~d------------lLv~~a~~~~ 1044 (1074)
T KOG0250|consen 991 SGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRK-ISMD------------LLVDFAKKKG 1044 (1074)
T ss_pred CcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHH-HHHH------------HHHHHHHhhc
Confidence 6778999999999988877777888888888777777764 3332 3566666777
No 26
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.07 E-value=1e-07 Score=97.71 Aligned_cols=212 Identities=17% Similarity=0.237 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLC 134 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~l 134 (707)
......+............++..+..+|..++.++......|.....++..+.+...+....++.++.........++.+
T Consensus 18 ~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~l 97 (237)
T PF00261_consen 18 EEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEEL 97 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 135 ETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY 214 (707)
Q Consensus 135 e~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~e 214 (707)
+..+..+....+.......++...+..++..+...+..+..++.++..++.+|......+..+.............++..
T Consensus 98 E~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~ 177 (237)
T PF00261_consen 98 EQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEK 177 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 55555555555555555555555544444455555555555555555555555555554544444444444445555555
Q ss_pred HHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHH
Q 005229 215 IEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVEL 266 (707)
Q Consensus 215 i~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~ 266 (707)
|..+..++.......+.++..+..|+.++..++.++...+..+..+..+++.
T Consensus 178 i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 178 IRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555444444444443
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=4.7e-06 Score=97.68 Aligned_cols=92 Identities=21% Similarity=0.308 Sum_probs=39.0
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 245 GKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRV 324 (707)
Q Consensus 245 ~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~ 324 (707)
+...++..+++++.....++-..+.++...++++..|..+.......+.++...+......+.+....+.++..++....
T Consensus 476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k 555 (1293)
T KOG0996|consen 476 GIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLK 555 (1293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33333444444444444444444444444444444444443333444444444444444444444444444444444444
Q ss_pred hhHHHhHHHHHH
Q 005229 325 KEFELREKELDS 336 (707)
Q Consensus 325 ~E~e~~e~~l~~ 336 (707)
.|+...++.++.
T Consensus 556 ~e~~~~~k~l~~ 567 (1293)
T KOG0996|consen 556 QELKEKEKELPK 567 (1293)
T ss_pred HHHHHHHHhHHH
Confidence 444333333333
No 28
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.03 E-value=6.3e-06 Score=96.46 Aligned_cols=151 Identities=15% Similarity=0.239 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005229 87 RSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKL 166 (707)
Q Consensus 87 ~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l 166 (707)
++++.++.....++.++..+.-.+.....++..++..+..+......+...++.++..+...+.....+..+++.+..++
T Consensus 273 k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 273 KQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444443333333334444444444443444444444433333333344444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHH
Q 005229 167 ELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIE 237 (707)
Q Consensus 167 ~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le 237 (707)
+.....+......+...+.++.....+|.++...++.++.++..+..+|..++..+......+.....++.
T Consensus 353 e~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 353 EEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555555555555555555555555555555555544444
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.03 E-value=3.9e-06 Score=93.31 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQ 92 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~ 92 (707)
..++.++....+....+..+.+.+......+..+...+
T Consensus 174 ~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L 211 (546)
T PF07888_consen 174 ERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESL 211 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 30
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.01 E-value=5.5e-06 Score=95.82 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHhHHHHHHHHHHH
Q 005229 296 ETHFDSLKKGLEDRLQDLELKEREFEKRVK-EFELREKELDSIRKAV 341 (707)
Q Consensus 296 ~~~~~~le~~L~~~~~eL~~~e~~~~~~~~-E~e~~e~~l~~~~~~~ 341 (707)
...|..+...|.....+|+. ++.++.++. +|+....+++.+....
T Consensus 447 ~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~ 492 (569)
T PRK04778 447 LEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEET 492 (569)
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688889999999999999 999999999 9999988888887743
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=1.4e-05 Score=92.41 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=36.4
Q ss_pred HHHHhhh--hcccCcHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 005229 455 EWKKKMR--VAVENSLEVLGFLHLLAAYRLAPAFDREELESLL 495 (707)
Q Consensus 455 ~Wk~~~~--~~~~~~l~a~~fl~~l~~fgi~~~f~~~el~~l~ 495 (707)
-||..+. +||..||-||.+++.+-.|.++|.|=.|||+.-+
T Consensus 1075 iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAAL 1117 (1174)
T KOG0933|consen 1075 IWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAAL 1117 (1174)
T ss_pred cHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhh
Confidence 5999986 6777999999999999999999999999998543
No 32
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.90 E-value=8.6e-06 Score=100.69 Aligned_cols=161 Identities=13% Similarity=0.189 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhh
Q 005229 166 LELLQGKVRLHENEVESLEQKLDS----MRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSK 241 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~----~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~ 241 (707)
+.+++.++..+..++..+..++.. +..+..++..++..++.++..+...+.+....+..+++++.....-....+.
T Consensus 967 ~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~ 1046 (1822)
T KOG4674|consen 967 ITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQS 1046 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333322 3344566666677777777777777777777777777777666555555555
Q ss_pred hchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 242 EIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKEREFE 321 (707)
Q Consensus 242 El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~ 321 (707)
.++.--.++......+..+..+......++..+........+-...+...|.+.+.-+...-.....+...|......+.
T Consensus 1047 ~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh 1126 (1822)
T KOG4674|consen 1047 KYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLH 1126 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556666666666666666666666666666655566667777666555444444444444444444444
Q ss_pred HHHhh
Q 005229 322 KRVKE 326 (707)
Q Consensus 322 ~~~~E 326 (707)
..+.+
T Consensus 1127 ~qie~ 1131 (1822)
T KOG4674|consen 1127 DQFEE 1131 (1822)
T ss_pred HHHHH
Confidence 44433
No 33
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=98.87 E-value=3.1e-09 Score=83.43 Aligned_cols=52 Identities=33% Similarity=0.462 Sum_probs=44.4
Q ss_pred ccceeeeE-cCCCceEEEEecCC---CCcccccCCCCcHHHHHHHHHHHHHHccCC
Q 005229 637 MHFRGVRQ-RPWGKWAAEIRDPK---KAARIWLGTFDTAEAAALAYDEAALRFKGR 688 (707)
Q Consensus 637 s~~rGV~~-~~~g~w~a~i~~~~---~~~~~~lG~f~t~e~Aa~ayd~aa~~~~g~ 688 (707)
|+|+||++ +..|+|+|+|+++. +++++++|+|+++++|+.||+.++..++|.
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 68999954 56799999998842 137999999999999999999999999874
No 34
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=1.8e-05 Score=91.13 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=36.4
Q ss_pred ChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHH-------HHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHH
Q 005229 221 DPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECS-------KEVELKKNQLNLIQDKSSLFQTRTIVYLKELK 293 (707)
Q Consensus 221 eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~-------~~le~k~~ele~l~~~le~le~~~~~~~~~~~ 293 (707)
+|..+..-+.+.......++.++..++.++..+.+++.++. .+++..-.++-.+....+.+..++..++.+=+
T Consensus 398 ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~ 477 (1200)
T KOG0964|consen 398 EIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEK 477 (1200)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444433333 33334433444444444444444333333333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005229 294 EKETHFDSLKKGLEDRL 310 (707)
Q Consensus 294 el~~~~~~le~~L~~~~ 310 (707)
.+...+.+++..|..-.
T Consensus 478 ~l~~~i~~~~~dl~~~~ 494 (1200)
T KOG0964|consen 478 KLRSLIANLEEDLSRAE 494 (1200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444443333
No 35
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.81 E-value=0.00016 Score=82.67 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhHhhHHHHHHHhhcCC
Q 005229 17 IGEFNCELELKENELNSLSVSLNLKN 42 (707)
Q Consensus 17 ~~~~~~eL~l~e~eL~~~~~el~~~~ 42 (707)
....+.+|...+.++..++.++...+
T Consensus 29 ~~~~e~eL~~~qeel~~~k~~l~~~E 54 (522)
T PF05701_consen 29 VKEKETELEKAQEELAKLKEQLEAAE 54 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.81 E-value=0.00015 Score=77.75 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSI-EEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLML 133 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i-~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~ 133 (707)
..+...+..+.+++..++.+-..++.+|..+.... ......-...+.++..+...|.....+...++-+...+..+++.
T Consensus 7 ~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~ 86 (312)
T PF00038_consen 7 QSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELED 86 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHH
Confidence 44555555555555555555555555555544442 11111233445555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005229 134 CETKLECEKKELELTQSSIKELSMEFHS 161 (707)
Q Consensus 134 le~el~~~~~Ele~~e~~i~~l~~ele~ 161 (707)
+..+++........++..+..+++.++.
T Consensus 87 ~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 87 LRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 5555555555555555555544444433
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.81 E-value=7.2e-05 Score=85.45 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHH
Q 005229 168 LLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQ 233 (707)
Q Consensus 168 ~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~ 233 (707)
.++..-..++.-|-.++.-...-......+.++++.+..++.++...-+.+..+++..+..+.+++
T Consensus 372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444455555555555544444444444444444444443
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.80 E-value=0.00022 Score=81.64 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=11.3
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHh
Q 005229 6 VEKIMGLGQKRIGEFNCELELKEN 29 (707)
Q Consensus 6 ~~~~~~~~~~~~~~~~~eL~l~e~ 29 (707)
.+.++...+.++..++.++..++.
T Consensus 32 ~e~eL~~~qeel~~~k~~l~~~E~ 55 (522)
T PF05701_consen 32 KETELEKAQEELAKLKEQLEAAER 55 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444444443
No 39
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.79 E-value=0.00037 Score=80.88 Aligned_cols=93 Identities=14% Similarity=-0.027 Sum_probs=59.6
Q ss_pred chHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 2 VSWRVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKK 81 (707)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~e 81 (707)
=+.++..++.++...-.-+..+-++++.+|+-++.+-..-.-+..|.-+..++..++.+......++.++..+...++..
T Consensus 258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 35567788888888888888899999999888877665522223344444555556666666666666666555555555
Q ss_pred HHHHHHHHHHHHH
Q 005229 82 VGEAQRSIEEQEK 94 (707)
Q Consensus 82 i~~le~~i~e~~~ 94 (707)
-..|...++-...
T Consensus 338 ~eqL~~~~ellq~ 350 (1195)
T KOG4643|consen 338 KEQLDGQMELLQI 350 (1195)
T ss_pred HHHhhhhhhHhhh
Confidence 5555555554443
No 40
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.79 E-value=0.00031 Score=79.36 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 51 INKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEV 127 (707)
Q Consensus 51 ~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l 127 (707)
......+++++..++.+|..++..+..++.+...++.-|..+..++.+-+-+|+.....+..++.+|..+..++..+
T Consensus 91 Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~ 167 (1265)
T KOG0976|consen 91 RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMI 167 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHH
Confidence 34445556666666666666666666666666666666666666666666555555555555555554444444433
No 41
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.79 E-value=0.00023 Score=80.39 Aligned_cols=112 Identities=10% Similarity=0.056 Sum_probs=51.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 4 WRVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVG 83 (707)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~ 83 (707)
-.++..+.+.+.++..+|+.+..++.++..++.-+......+ .....++++...++..++..+.....+|..+-+.+.
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~--ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~ 172 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDK--KENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLH 172 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 345555555555555555555555555554443333222221 112223344444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005229 84 EAQRSIEEQEKQLAFKESKISSMQTLIEENEGLL 117 (707)
Q Consensus 84 ~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l 117 (707)
..-..+.+++.++..+-.+....++.+..+.+.+
T Consensus 173 nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~ 206 (1265)
T KOG0976|consen 173 DKNEELNEFNMEFQTKLAEANREKKALEEKLEKF 206 (1265)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555554444444444444444443333
No 42
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=7.2e-05 Score=82.56 Aligned_cols=255 Identities=18% Similarity=0.215 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005229 71 CYDEVELREKKVGEAQRSIEEQEKQ---LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELEL 147 (707)
Q Consensus 71 ~~~e~~~~~~ei~~le~~i~e~~~e---l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~ 147 (707)
...++..+++....|...|++.... ++.++++...++..+..+..-+..++...+.....++.+..+++....|++.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~ 312 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK 312 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666655443 6777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhhhHH---HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 148 TQSSIKELSMEFHSEE---EKLEL-------LQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEE 217 (707)
Q Consensus 148 ~e~~i~~l~~ele~~e---~~l~~-------le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~ 217 (707)
++...++|++.++-.. +.+.. +.+.+..++.+++.+.+++-..+.+++...++++.+=..++.+..+|.-
T Consensus 313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l 392 (581)
T KOG0995|consen 313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKL 392 (581)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766543222 33333 4444444444444444444444444444444444433333333333332
Q ss_pred H----hcChh-----------hH-HHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhh
Q 005229 218 L----NQDPA-----------SK-DKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLF 281 (707)
Q Consensus 218 l----~~eie-----------~~-~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~l 281 (707)
. ...++ .+ ..-.-.+...+..+..++.....++..+++.+......++++...+..++.++...
T Consensus 393 ~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~ 472 (581)
T KOG0995|consen 393 GIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKA 472 (581)
T ss_pred HHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 00000 00 01111233334444444445555555555555555555555555555554444444
Q ss_pred hhHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 282 QTRTIV----YLKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVK 325 (707)
Q Consensus 282 e~~~~~----~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~ 325 (707)
.+.... -..+|..-..|++.++.+|......+.......+..++
T Consensus 473 ~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~ 520 (581)
T KOG0995|consen 473 ESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVK 520 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333221 13345555556666666655544444444444443333
No 43
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.78 E-value=1.4e-05 Score=90.94 Aligned_cols=248 Identities=16% Similarity=0.139 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKN 129 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ 129 (707)
++.+...++++|.......++.+.-.+....++.++...|+=..-+-+-.+.+-+.++.+++.+...+++++-+++.+..
T Consensus 274 im~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKa 353 (1243)
T KOG0971|consen 274 IMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKA 353 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667766666666666666666666666666555544443444444444555555555555555555544444
Q ss_pred hH---------------HHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 130 SL---------------MLCETKLECEKKEL-------ELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKL 187 (707)
Q Consensus 130 el---------------e~le~el~~~~~El-------e~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el 187 (707)
|+ .+++.....+++-+ ...+.....+.++++.+..++.+++..-+.+..+++..+..+
T Consensus 354 EmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~i 433 (1243)
T KOG0971|consen 354 EMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTI 433 (1243)
T ss_pred HHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 23333333333332 233334444555555555555555555555555555555555
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHH
Q 005229 188 DSMRKQQKK---YFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEV 264 (707)
Q Consensus 188 ~~~~~ei~e---l~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~l 264 (707)
.+++++++- -+.-++.+-...-+++.++..++.+|..++.--+--++-.+.-...-..+++||+.+...+.++.+++
T Consensus 434 adlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~ 513 (1243)
T KOG0971|consen 434 ADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRV 513 (1243)
T ss_pred HHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555432 11222333344444445555555554444332222222222222222356677777777777777777
Q ss_pred HHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHH
Q 005229 265 ELKKNQLNLIQDKSSLFQTRTIVYLKELKEKET 297 (707)
Q Consensus 265 e~k~~ele~l~~~le~le~~~~~~~~~~~el~~ 297 (707)
++....+-+...-|.-+...+..+..++.++.+
T Consensus 514 ~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 514 EAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777766666666666666665556656555555
No 44
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.76 E-value=0.00039 Score=86.56 Aligned_cols=243 Identities=14% Similarity=0.151 Sum_probs=108.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCC---ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 4 WRVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPS---SA--QEWINKCQAYQKELRLWKNLIEECYDEVELR 78 (707)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l---~~--~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~ 78 (707)
..+++++..+..++..+..+-...+.+++.+...+....... .. .-....+..+...-.++.++-+.+...+...
T Consensus 55 ~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~ 134 (1822)
T KOG4674|consen 55 SELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQ 134 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888888888887554443 10 1111112222222222222222222222222
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 79 EKKVGEAQRSIEEQ-------EKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 79 ~~ei~~le~~i~e~-------~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
..+|..+..++..+ ...+.+++..+..++..--..+.....++.++..+..+..-+..++....+++......
T Consensus 135 ~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re 214 (1822)
T KOG4674|consen 135 KAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRRE 214 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 22222222222222 22233333333333333333333334444444444444444444444444444444444
Q ss_pred ----HHHHHHhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 005229 152 ----IKELSMEFHSEE-------EKLELLQGKVRLHENEVESLEQKLDSMRKQ----QKKYFDDVELKKRELNEIRKYIE 216 (707)
Q Consensus 152 ----i~~l~~ele~~e-------~~l~~le~el~~~~~eL~~~e~el~~~~~e----i~el~~ele~k~~e~~e~~~ei~ 216 (707)
+..++..+.++. ..+..+.+...++...|.++..++..+.+. ...+.+++..+.+-..-......
T Consensus 215 ~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~e 294 (1822)
T KOG4674|consen 215 HSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLE 294 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 333333333334444444444444333332 23444444444444444444445
Q ss_pred HHhcChhhHHHhHHHHHHHHHHHhhhchhh
Q 005229 217 ELNQDPASKDKELRFVQQSIEECSKEIPGK 246 (707)
Q Consensus 217 ~l~~eie~~~~el~~~~~~le~l~~El~~l 246 (707)
.+.+++..+...+..+.+-++.....+...
T Consensus 295 e~~~~~~el~~~i~~~~klled~~~~~~e~ 324 (1822)
T KOG4674|consen 295 ELSHEVAELQRAIEELEKLLEDASERNKEN 324 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 555555555555555544444444444433
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.75 E-value=8.7e-05 Score=82.82 Aligned_cols=309 Identities=15% Similarity=0.164 Sum_probs=171.9
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 6 VEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEA 85 (707)
Q Consensus 6 ~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~l 85 (707)
|+..+..-=++..-+..+=..++|+|..++......-..+ ..-+..++..+...+++...+...++.+|..+
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~i--------k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl 118 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGI--------KAKYEAELATARKLLDETARERAKLEIEITKL 118 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcch--------hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444445566677778888899999988888776665 23467778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 005229 86 QRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEK 165 (707)
Q Consensus 86 e~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~ 165 (707)
..++.+++..+...++........+......+..++.++..+.-.+..++.++..+..+...+...|..+...++.----
T Consensus 119 ~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll 198 (546)
T KOG0977|consen 119 REELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888777787777777777777777777777777777777777777777777766654332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSMRKQQKKYFD----DV--ELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEEC 239 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~----el--e~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l 239 (707)
....+..+..+..+|.-+... .+.+|.+... +. ...+--.+++...|.++..+.+.. ....++.++..
T Consensus 199 r~d~~n~~q~Lleel~f~~~~---h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~---~~~nR~diE~~ 272 (546)
T KOG0977|consen 199 RVDLQNRVQTLLEELAFLKRI---HKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAI---SRQNRKDIESW 272 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHhc---cHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHH
Confidence 122222222222222222211 1122211111 11 000111122222222222221111 11111111111
Q ss_pred -hhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHH
Q 005229 240 -SKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETH----FDSLKKGLEDRLQDLE 314 (707)
Q Consensus 240 -~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~----~~~le~~L~~~~~eL~ 314 (707)
..++...+..-+...........++...+..+..+..++..++++...+...+..|... -...++.|..+..++.
T Consensus 273 Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~ 352 (546)
T KOG0977|consen 273 YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIA 352 (546)
T ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 11112222111122223444455566666666666666666666655555555554443 3345666667777777
Q ss_pred HHHHHHHHHHhhHH
Q 005229 315 LKEREFEKRVKEFE 328 (707)
Q Consensus 315 ~~e~~~~~~~~E~e 328 (707)
.+..++.....||+
T Consensus 353 ~mReec~~l~~Elq 366 (546)
T KOG0977|consen 353 KMREECQQLSVELQ 366 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666666664
No 46
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.72 E-value=0.00012 Score=84.89 Aligned_cols=343 Identities=17% Similarity=0.163 Sum_probs=173.0
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCc--hHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 005229 6 VEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSS--AQEWINKCQAYQKELRLWKNLIE-----ECYDEVELR 78 (707)
Q Consensus 6 ~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~--~~l~~~~~~~~~~el~~l~~~i~-----e~~~e~~~~ 78 (707)
+...++.+...-.....++.-+...+..+++.+......+. +..+..++..+...+........ +...-+..+
T Consensus 124 i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l 203 (569)
T PRK04778 124 ILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQL 203 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 44555666666666777888888888888888888777742 22233333333333333322211 112333444
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHhHHHHHHH---H--HHHHHHHHHHHHHHHHH-----HHhHHHHHHH
Q 005229 79 EKKVGEAQRSIEEQEKQLA-----------FKESKISSMQTL---I--EENEGLLKDKEKLYDEV-----KNSLMLCETK 137 (707)
Q Consensus 79 ~~ei~~le~~i~e~~~el~-----------ele~ei~~l~~~---i--~e~~~~l~~~e~e~~~l-----~~ele~le~e 137 (707)
..++..++..|+.+=.-+. ++..-+..+... + ..+...+..+++.+... ..+++..+..
T Consensus 204 ~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~ 283 (569)
T PRK04778 204 EEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEK 283 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 4444444444444322222 222221111110 0 00122222222222221 1123333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Q 005229 138 LECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQ----------QKKYFDDVELKKRE 207 (707)
Q Consensus 138 l~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~e----------i~el~~ele~k~~e 207 (707)
++.+.++|+.+-..+..-..-....+.....+...+..+......+..++..++.. +..+.++++.+.+.
T Consensus 284 ~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~ 363 (569)
T PRK04778 284 NEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQ 363 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHH
Confidence 33333333333333322222222222334444444444444444444444444444 44455555555555
Q ss_pred HHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhh--hhhHH
Q 005229 208 LNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSL--FQTRT 285 (707)
Q Consensus 208 ~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~--le~~~ 285 (707)
+..+...+..........+..+..+.+.++.+.++...+...+..+.+.-..+...+...+..+..+.+.+.. +-+--
T Consensus 364 ~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip 443 (569)
T PRK04778 364 YDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLP 443 (569)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 5555555555555555555555555555555555555555556666655555556666655555555554443 12222
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhhhhhh
Q 005229 286 IVYLKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVKEFELREKELDSIRKAVEDRSKNL 348 (707)
Q Consensus 286 ~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~~~~~~~~~~~~~~ 348 (707)
..+..-+.....++..+...|...-=.|.+....+......++....+..++.+....-...+
T Consensus 444 ~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~I 506 (569)
T PRK04778 444 EDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLI 506 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888888888888886667888888888888888877777777766544444433
No 47
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=0.0014 Score=72.56 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005229 49 EWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEE 112 (707)
Q Consensus 49 l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e 112 (707)
.+.+++..++.+++.++..+.++........+.++.+..+|++...+++.++++...+++.|+.
T Consensus 263 slre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 263 SLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566666666666666666666666555555555555555555555555555555555443
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.63 E-value=4.1e-05 Score=88.90 Aligned_cols=10 Identities=40% Similarity=0.600 Sum_probs=5.7
Q ss_pred CCchhhHHHh
Q 005229 393 RDPALLVLHA 402 (707)
Q Consensus 393 ~dpa~lVLd~ 402 (707)
.+|.-|+||=
T Consensus 495 ~~~~~lilDE 504 (562)
T PHA02562 495 VDTNLLILDE 504 (562)
T ss_pred CCcCeEEEec
Confidence 3566666654
No 49
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.62 E-value=0.00045 Score=71.25 Aligned_cols=92 Identities=22% Similarity=0.303 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhh
Q 005229 193 QQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLN 272 (707)
Q Consensus 193 ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele 272 (707)
.+.++..++..+..+..++..+|..+.+++..+.+++..+-++.+.+.++..++..++-.....+.++..++...++++.
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhhhhhhH
Q 005229 273 LIQDKSSLFQTR 284 (707)
Q Consensus 273 ~l~~~le~le~~ 284 (707)
.+...+..+...
T Consensus 239 e~~k~ik~l~~~ 250 (294)
T COG1340 239 ELEKKIKALRAK 250 (294)
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 50
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.62 E-value=2.8e-05 Score=90.33 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 130 SLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLE 184 (707)
Q Consensus 130 ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e 184 (707)
+++.+..+...+..++..++..+.++...+...++.+..++..+..++.++...+
T Consensus 221 e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~ 275 (562)
T PHA02562 221 KYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQ 275 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333
No 51
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00037 Score=78.61 Aligned_cols=111 Identities=15% Similarity=0.218 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 107 QTLIEENEGLLKDKEKLYD--EVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLE 184 (707)
Q Consensus 107 ~~~i~e~~~~l~~~e~e~~--~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e 184 (707)
+++|+..+..-++++...+ --+.+..++..+....++.+-....+...+..+++.+..++..+.+.+..+.-.+...+
T Consensus 392 kkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~k 471 (1118)
T KOG1029|consen 392 KKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQK 471 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHH
Confidence 3344444444444443332 11223344444444555555555555556666655555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 185 QKLDSMRKQQKKYFDDVELKKRELNEIRKYIEE 217 (707)
Q Consensus 185 ~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~ 217 (707)
.+++.+.+.++-...++..+..++.+.+..+..
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555544444444444444444444433
No 52
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.57 E-value=0.00069 Score=72.63 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENE 114 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~ 114 (707)
..+..++..+...|+.+..+...+.-++..+..++..++..+.........+...+..+.
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344555555555555555555555555555555555555444444444444444444333
No 53
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.57 E-value=0.00031 Score=88.43 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=23.8
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhH
Q 005229 245 GKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTR 284 (707)
Q Consensus 245 ~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~ 284 (707)
..+.+++.+..............+.+.+.+..++..+...
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ 601 (1486)
T PRK04863 562 ELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555666666666666666666666666665554
No 54
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.57 E-value=0.00039 Score=79.83 Aligned_cols=210 Identities=20% Similarity=0.208 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005229 63 LWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEK 142 (707)
Q Consensus 63 ~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~ 142 (707)
.....+.+++.++..+..++..++.++..+...+.++..++...+....+++.+++-.+..+.. +...+..+..++
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l----L~d~e~ni~kL~ 400 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL----LPDAEENIAKLQ 400 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444444433333222 233445556666
Q ss_pred HHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 143 KELELTQSSIKELSMEFHSEE----EKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEEL 218 (707)
Q Consensus 143 ~Ele~~e~~i~~l~~ele~~e----~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l 218 (707)
.-++....++.++..+.+..+ +++..++........+...+-.++..+..+++.+..++..+++.+..+..+++.+
T Consensus 401 ~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 401 ALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 666666666666666655544 3355555555555556666667777777778888888888888888888888777
Q ss_pred hcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhh
Q 005229 219 NQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLF 281 (707)
Q Consensus 219 ~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~l 281 (707)
.+.+. ......++-++.+.+...+.+|..+-.....++++|..+...+++...-...+
T Consensus 481 ~k~~~-----Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEl 538 (594)
T PF05667_consen 481 PKDVN-----RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDEL 538 (594)
T ss_pred CCCCC-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77753 45566778888888888888888888888888888888888877666555553
No 55
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.56 E-value=0.0019 Score=75.35 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=12.9
Q ss_pred hhHHHHHHHHhhhHhhHHHHHHHhh
Q 005229 15 KRIGEFNCELELKENELNSLSVSLN 39 (707)
Q Consensus 15 ~~~~~~~~eL~l~e~eL~~~~~el~ 39 (707)
+...++..+|+.++.+++.+++++.
T Consensus 198 enll~lr~eLddleae~~klrqe~~ 222 (1195)
T KOG4643|consen 198 ENLLRLRNELDDLEAEISKLRQEIE 222 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555554443
No 56
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.55 E-value=0.00075 Score=80.20 Aligned_cols=18 Identities=28% Similarity=0.411 Sum_probs=9.0
Q ss_pred CHHHHHHH-HHHHHHHHHh
Q 005229 442 NAQVRDEA-MKVAGEWKKK 459 (707)
Q Consensus 442 ~~~v~~~A-~~~A~~Wk~~ 459 (707)
..+|+..| ++||...+.+
T Consensus 980 e~~v~~aa~~kl~eif~r~ 998 (1317)
T KOG0612|consen 980 ERDVKHAAVNKLAEIFNRK 998 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 34454444 3466655554
No 57
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.54 E-value=0.0031 Score=70.95 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=37.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005229 96 LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFH 160 (707)
Q Consensus 96 l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele 160 (707)
+.+++..+..++..+..-..+++..+..+..+.+++.....+++++...-...+-.+..+...+.
T Consensus 351 v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~ 415 (786)
T PF05483_consen 351 VTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILA 415 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55555556666666666666666666666666666666666666555544444444444444443
No 58
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00031 Score=79.27 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=18.2
Q ss_pred eeEc-CCCceEEEEecCCCCcccccCCCC
Q 005229 642 VRQR-PWGKWAAEIRDPKKAARIWLGTFD 669 (707)
Q Consensus 642 V~~~-~~g~w~a~i~~~~~~~~~~lG~f~ 669 (707)
++.+ ..|+|..++-..|+ +.-+|-|+
T Consensus 1006 IrkKn~sGWWeGELqarGk--krq~GWFP 1032 (1118)
T KOG1029|consen 1006 IRKKNASGWWEGELQARGK--KRQIGWFP 1032 (1118)
T ss_pred EEecCCCccchhhHhhcCC--cccccccc
Confidence 3544 56999999966666 54557776
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.52 E-value=0.011 Score=74.68 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=15.1
Q ss_pred HHHHHHhhhhccC-CCCCHHHHHHHHHHHHHH
Q 005229 426 SCILLLEQLSTVE-PEINAQVRDEAMKVAGEW 456 (707)
Q Consensus 426 ~c~~lle~l~~~~-~~~~~~v~~~A~~~A~~W 456 (707)
.|+-.|+.++.+. |..-..+++...-++..-
T Consensus 963 ~~~~~l~~~~~~~~~~~~~~l~e~~~~~~~~i 994 (1201)
T PF12128_consen 963 QWAPDLQELLDVLIPQQQQALIEQGRNIGNDI 994 (1201)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444456655442 333334555655555543
No 60
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.49 E-value=0.00029 Score=78.77 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 56 AYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQL--------AFKESKISSMQTLIEENEGLLKDKEKLYDEV 127 (707)
Q Consensus 56 ~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el--------~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l 127 (707)
.-+++|..|++.+...-+++..++.+-..|+.+|..++.-. .-.+.++..+.+.|++........+.++..+
T Consensus 39 rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl 118 (546)
T KOG0977|consen 39 REKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKL 118 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777777777777777777777777766552 2233444444444444444444444444444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 128 KNSLMLCETKLECEKKELELTQSSIK 153 (707)
Q Consensus 128 ~~ele~le~el~~~~~Ele~~e~~i~ 153 (707)
..+++.+...+....+.....+..+.
T Consensus 119 ~~e~~elr~~~~~~~k~~~~~re~~~ 144 (546)
T KOG0977|consen 119 REELKELRKKLEKAEKERRGAREKLD 144 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444444444444444433333333
No 61
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.49 E-value=0.013 Score=74.03 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhcchh--hHHHhhhCCccchhhhHHHHhhcCCcccccccccc
Q 005229 488 REELESLLCIVAQHRQT--PKLRRTLGFADKVPGLQCSTTAEGRSAPSMLVGTS 539 (707)
Q Consensus 488 ~~el~~l~~~~~~~~~~--~~l~~~lgl~~k~~~~i~~li~~g~~~~a~~~~~~ 539 (707)
...++.++.......+. -+.++ .++..+.+++.+|-.-.+.|..+...-+
T Consensus 965 ~~~l~~~~~~~~~~~~~~l~e~~~--~~~~~i~~f~~~l~~~~r~I~~~s~~l~ 1016 (1201)
T PF12128_consen 965 APDLQELLDVLIPQQQQALIEQGR--NIGNDISNFYGVLEDFDRRIKSQSRRLS 1016 (1201)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34455555555433333 34444 3466778888888888888887655443
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.49 E-value=0.0014 Score=82.73 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=24.9
Q ss_pred eEcCCCceEEEEecCCCCcccc----cCCCCcHHHHHHHHH--HHHHHccCCCC
Q 005229 643 RQRPWGKWAAEIRDPKKAARIW----LGTFDTAEAAALAYD--EAALRFKGRKA 690 (707)
Q Consensus 643 ~~~~~g~w~a~i~~~~~~~~~~----lG~f~t~e~Aa~ayd--~aa~~~~g~~~ 690 (707)
=+|.|=.+.++++.++ ..| .|+-.+-|-...+|- .|++.||+..+
T Consensus 1340 DyR~~~~f~~~~~~g~---~~~~~~~~~~lSgGE~~~~~~~~l~a~l~~~~~~~ 1390 (1486)
T PRK04863 1340 DYRNYLELEVEVNRGA---DGWLRAESGALSTGEAIGTGMSILVMVVQSWEEES 1390 (1486)
T ss_pred ccccceEEEEEEecCC---cceeecCCCCCCcchhHHHHHHHHHHHHHHhhhcc
Confidence 3556667778875422 233 456666554444433 46677886543
No 63
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.47 E-value=0.0052 Score=71.07 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=57.5
Q ss_pred HHHHhhhhhhHHHHH-HHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 7 EKIMGLGQKRIGEFN-CELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEA 85 (707)
Q Consensus 7 ~~~~~~~~~~~~~~~-~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~l 85 (707)
.+..+....+|.++. ..+...+..|..++..+.. .++...+..+..+.+.+..+..++..+...+..|
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~-----------~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L 127 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADK-----------YRFKKAKQAIKEIEEQLDEIEEDIKEILDELDEL 127 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555 5555555555555433222 2234445555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 005229 86 QRSIEEQEKQLAFKESKISSMQTLI-----------EENEGLLKDKEKLYDEVK 128 (707)
Q Consensus 86 e~~i~e~~~el~ele~ei~~l~~~i-----------~e~~~~l~~~e~e~~~l~ 128 (707)
...-+.-+..+..+......+++.+ ..++..+..++..|....
T Consensus 128 ~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~ 181 (560)
T PF06160_consen 128 LESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFE 181 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555443 344445555555554443
No 64
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.47 E-value=0.0025 Score=65.90 Aligned_cols=56 Identities=9% Similarity=0.092 Sum_probs=24.8
Q ss_pred HHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhh
Q 005229 225 KDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSL 280 (707)
Q Consensus 225 ~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~ 280 (707)
+..++..+......+-.++..+..+.++...++..+.++.+..+.+.+.+-..+..
T Consensus 163 l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve 218 (294)
T COG1340 163 LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVE 218 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444445555555444444444433333
No 65
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=0.00031 Score=82.42 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=4.0
Q ss_pred HHhhcCCccc
Q 005229 523 STTAEGRSAP 532 (707)
Q Consensus 523 ~li~~g~~~~ 532 (707)
.|-+=+++|.
T Consensus 871 ~~tkl~~~i~ 880 (1141)
T KOG0018|consen 871 ELTKLDKEIT 880 (1141)
T ss_pred HHHHHhhhhh
Confidence 3333344443
No 66
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.42 E-value=0.01 Score=73.01 Aligned_cols=59 Identities=24% Similarity=0.201 Sum_probs=35.8
Q ss_pred hcccCcHHHHHHHHHHh----hhC-C--------CCCCCHHHHHHHHHHhhhcchhhHHHhhhCCccchhhhHHH
Q 005229 462 VAVENSLEVLGFLHLLA----AYR-L--------APAFDREELESLLCIVAQHRQTPKLRRTLGFADKVPGLQCS 523 (707)
Q Consensus 462 ~~~~~~l~a~~fl~~l~----~fg-i--------~~~f~~~el~~l~~~~~~~~~~~~l~~~lgl~~k~~~~i~~ 523 (707)
+||+.-+.+++|=+.|+ .++ | -...|.+-+..|+..+-..... .+.+|.+-+++.+.+.
T Consensus 817 SGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~---~~qiiIISH~eel~e~ 888 (908)
T COG0419 817 SGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD---GRQIIIISHVEELKER 888 (908)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHh
Confidence 55555555555444444 332 2 2344777777777766544433 6778888888888865
No 67
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.41 E-value=0.0011 Score=76.41 Aligned_cols=38 Identities=8% Similarity=-0.010 Sum_probs=23.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCC
Q 005229 5 RVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKN 42 (707)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~ 42 (707)
.+..++..+.++.......+..+++.|..++..+....
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 45556666666666666666666666666666555433
No 68
>PRK11637 AmiB activator; Provisional
Probab=98.41 E-value=0.00025 Score=79.48 Aligned_cols=8 Identities=13% Similarity=0.297 Sum_probs=3.9
Q ss_pred ccceeeeE
Q 005229 637 MHFRGVRQ 644 (707)
Q Consensus 637 s~~rGV~~ 644 (707)
.-|-+||+
T Consensus 408 ~l~fei~~ 415 (428)
T PRK11637 408 SLYFEIRR 415 (428)
T ss_pred eEEEEEEE
Confidence 34555554
No 69
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.39 E-value=0.016 Score=71.23 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 005229 291 ELKEKETHFDSLKKGL 306 (707)
Q Consensus 291 ~~~el~~~~~~le~~L 306 (707)
.|+++...+..++..+
T Consensus 601 ~~~~l~~~~~~l~~~~ 616 (908)
T COG0419 601 KLKELEERLSQLEELL 616 (908)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444333333333
No 70
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.35 E-value=0.0052 Score=63.19 Aligned_cols=199 Identities=12% Similarity=0.058 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--
Q 005229 74 EVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS-- 151 (707)
Q Consensus 74 e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~-- 151 (707)
-+..+..++..|..+-..+...|+.-+..-+.+..+|+++...|...-.+...-+..-..++-......++--.++..
T Consensus 57 Ti~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn 136 (305)
T PF14915_consen 57 TIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMN 136 (305)
T ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhc
Confidence 444455555555555555555555555555555555666555555555554443333333333333333333333322
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhH
Q 005229 152 --IKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKEL 229 (707)
Q Consensus 152 --i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el 229 (707)
+..+....+.+..++...+..+..++.++-.....|.+.---++..+.++...+-.+.+++.-+..-+..+..+-...
T Consensus 137 ~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq 216 (305)
T PF14915_consen 137 SDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ 216 (305)
T ss_pred chHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 223333333334445555555555555555555555555555666777777777777777777777777888888888
Q ss_pred HHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhh
Q 005229 230 RFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLN 272 (707)
Q Consensus 230 ~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele 272 (707)
+.++.++-+++.+..-|+++++...+......+-+-..+..+.
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~ 259 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQ 259 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888888888888888888777666665555555555554443
No 71
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.33 E-value=0.0054 Score=68.75 Aligned_cols=159 Identities=11% Similarity=0.092 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005229 75 VELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENE--GLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSI 152 (707)
Q Consensus 75 ~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~--~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i 152 (707)
......++..+++++.-.-++-..+..+++.+++.+...- ..|.++...+..+..+-+.+.++.-.....|..+..++
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ 483 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKI 483 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555444444444444444433332221 12334444444444444444444444444444444444
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHH
Q 005229 153 KELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFV 232 (707)
Q Consensus 153 ~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~ 232 (707)
++...-++..-+.+..++.+...++.-+..++.--....+-|..++.+++...+.+.+.+..+..++.+.-..+..++.+
T Consensus 484 ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a 563 (961)
T KOG4673|consen 484 KEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEA 563 (961)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 33322222222344445555554444444444333334444555555555555555555555555444444444444443
Q ss_pred H
Q 005229 233 Q 233 (707)
Q Consensus 233 ~ 233 (707)
.
T Consensus 564 ~ 564 (961)
T KOG4673|consen 564 R 564 (961)
T ss_pred h
Confidence 3
No 72
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.33 E-value=0.0032 Score=75.10 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 169 LQGKVRLHENEVESLEQKLDSMRKQ 193 (707)
Q Consensus 169 le~el~~~~~eL~~~e~el~~~~~e 193 (707)
+.+.+..+++++..+++.+.....+
T Consensus 621 ~~e~~~~l~~~i~sL~~~~~~~~~~ 645 (1317)
T KOG0612|consen 621 ISEIIAELKEEISSLEETLKAGKKE 645 (1317)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 3333333344444444333333333
No 73
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.32 E-value=0.0037 Score=73.52 Aligned_cols=7 Identities=29% Similarity=0.197 Sum_probs=2.5
Q ss_pred HHhhhHh
Q 005229 23 ELELKEN 29 (707)
Q Consensus 23 eL~l~e~ 29 (707)
+|.-+..
T Consensus 1423 ~l~~~~a 1429 (1758)
T KOG0994|consen 1423 QLRSKLA 1429 (1758)
T ss_pred HHHHHHH
Confidence 3333333
No 74
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.28 E-value=0.015 Score=65.56 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=24.5
Q ss_pred HHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCC
Q 005229 8 KIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPS 45 (707)
Q Consensus 8 ~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l 45 (707)
+..+.+..+.-....++..++..|+.-++-|....+++
T Consensus 85 ~EaEKIk~WKv~vesd~~qKErkLqenrk~IEaqrKaI 122 (786)
T PF05483_consen 85 KEAEKIKKWKVQVESDLKQKERKLQENRKIIEAQRKAI 122 (786)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666677777777777777777666664
No 75
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.26 E-value=0.0066 Score=70.26 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=10.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 005229 98 FKESKISSMQTLIEENEGLLKD 119 (707)
Q Consensus 98 ele~ei~~l~~~i~e~~~~l~~ 119 (707)
.+..++..+.++++.+...+..
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444433
No 76
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.26 E-value=0.021 Score=66.18 Aligned_cols=28 Identities=11% Similarity=0.296 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhHHHhHHHHHHHHH
Q 005229 312 DLELKEREFEKRVKEFELREKELDSIRK 339 (707)
Q Consensus 312 eL~~~e~~~~~~~~E~e~~e~~l~~~~~ 339 (707)
.|......+..+....+.......++.+
T Consensus 466 nm~~v~~~l~~a~~~v~~L~~~t~~li~ 493 (560)
T PF06160_consen 466 NMDEVNKQLEEAEDDVETLEEKTEELID 493 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455444444444444444444
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.24 E-value=0.00062 Score=79.75 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=8.2
Q ss_pred ChhhHHHhHHHHHHHHHHHhh
Q 005229 221 DPASKDKELRFVQQSIEECSK 241 (707)
Q Consensus 221 eie~~~~el~~~~~~le~l~~ 241 (707)
+.+.+...+..++.+-..|+.
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333
No 78
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0011 Score=75.57 Aligned_cols=68 Identities=12% Similarity=0.183 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhh
Q 005229 205 KRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLN 272 (707)
Q Consensus 205 ~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele 272 (707)
...+.+...++..++.++..+-..+...-..++.....-..+-++...++.++..+..++....+.+.
T Consensus 805 ~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~ 872 (970)
T KOG0946|consen 805 STRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIK 872 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 33333333444444333333333333333333333333333333333333333333333333333333
No 79
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=98.23 E-value=0.0016 Score=62.71 Aligned_cols=99 Identities=20% Similarity=0.327 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005229 53 KCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLM 132 (707)
Q Consensus 53 ~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele 132 (707)
++..++.++...+........++.........-++.+..+......++.+++.+...+.+....-......+..+.-.|-
T Consensus 12 ri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~ 91 (205)
T KOG1003|consen 12 RIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLV 91 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005229 133 LCETKLECEKKELELTQSS 151 (707)
Q Consensus 133 ~le~el~~~~~Ele~~e~~ 151 (707)
.++.+++......+..+..
T Consensus 92 iiE~dLE~~eeraE~~Es~ 110 (205)
T KOG1003|consen 92 IIEGELERAEERAEAAESQ 110 (205)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3344433333333333333
No 80
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.22 E-value=0.005 Score=69.06 Aligned_cols=161 Identities=11% Similarity=0.070 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005229 90 EEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELL 169 (707)
Q Consensus 90 ~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~l 169 (707)
.++...+..+++++..+-++-..+..+++.+.++....-. ..++.+..+.|..+...=..+.++.......+..+
T Consensus 405 ~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~-----~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKL 479 (961)
T KOG4673|consen 405 EEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALL-----KDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKL 479 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444445555555555555555555444444433321111 12222223333333333233333322222334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHh
Q 005229 170 QGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEE 249 (707)
Q Consensus 170 e~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~E 249 (707)
+.++.+.+.-++.+-..+..+..+.+.+..-+..++.--......|.++..++.+....+...+.....++..+...+.-
T Consensus 480 RAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat 559 (961)
T KOG4673|consen 480 RAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQAT 559 (961)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 44433333333333344444555555555445444444444555555555555555555555555555555554444444
Q ss_pred hhhhhh
Q 005229 250 LISKGK 255 (707)
Q Consensus 250 le~l~~ 255 (707)
..+...
T Consensus 560 ~d~a~~ 565 (961)
T KOG4673|consen 560 NDEARS 565 (961)
T ss_pred hhhhhh
Confidence 444333
No 81
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=98.21 E-value=0.012 Score=62.69 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISS-MQTLIEENEGLLKDKEKLYDEVKNSLML 133 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~-l~~~i~e~~~~l~~~e~e~~~l~~ele~ 133 (707)
..+..++.........++.-+..++++-..+..+......+-+....++.. .+..|.++...++........+..+-..
T Consensus 60 ~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~ 139 (309)
T PF09728_consen 60 DQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEE 139 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 444444444444444444444444444444443333333333333333222 4444444444444444333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005229 134 CETKLECEKKELELTQSSI 152 (707)
Q Consensus 134 le~el~~~~~Ele~~e~~i 152 (707)
+..++..+.++.+..+..+
T Consensus 140 L~eKlK~l~eQye~rE~~~ 158 (309)
T PF09728_consen 140 LREKLKSLIEQYELREEHF 158 (309)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555544444444333
No 82
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.18 E-value=0.012 Score=63.61 Aligned_cols=137 Identities=11% Similarity=0.121 Sum_probs=82.5
Q ss_pred hhHHHHHHHHhhhHhhHHHHHHHhhcCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 15 KRIGEFNCELELKENELNSLSVSLNLKNKP-SSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQE 93 (707)
Q Consensus 15 ~~~~~~~~eL~l~e~eL~~~~~el~~~~~~-l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~ 93 (707)
..+..+.++++.++.+...+...+.+-.+- ..+..+.+++.+++.+...+++....+..+....-..++.+..+|+..+
T Consensus 264 ~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kE 343 (622)
T COG5185 264 KFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKE 343 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 334445555555555555554444443332 2355667888888888888888888888888888888888877777777
Q ss_pred HHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 94 KQLAFKESKISSMQTLIEENE---GLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 94 ~el~ele~ei~~l~~~i~e~~---~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
.+|..++..+..+...+.... .+.+.+-.+...+-.+++.+.-+.+.+.+.+-..+-.
T Consensus 344 eei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~le 404 (622)
T COG5185 344 EEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLE 404 (622)
T ss_pred HHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHH
Confidence 777777777777776665542 2223333344444444444444444444444443333
No 83
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.16 E-value=0.012 Score=69.55 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=40.2
Q ss_pred HhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 24 LELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 24 L~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e 95 (707)
++.+..+|..+..+...... ..-+..+++.++.++..+...+..+..++..++.++..++.++.++...
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~---~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~ 252 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSEL---PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKK 252 (650)
T ss_pred HHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444333221 2335566666666666666666666666666666666666666666554
No 84
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=98.16 E-value=0.0037 Score=60.19 Aligned_cols=194 Identities=17% Similarity=0.222 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 74 EVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIK 153 (707)
Q Consensus 74 e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~ 153 (707)
++..+..+|..++.+...+...+.....++....+.-.+-...++.+++.......+++.++..+...+.--+.......
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555555555555555555555555555444444443434
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHH
Q 005229 154 ELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQ 233 (707)
Q Consensus 154 ~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~ 233 (707)
+....|--++..+.........-++.+..+..++.-+..-++.+...-+.........+..|..+..++......-+..+
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aE 164 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAE 164 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 43333333333333333333333333344333333333334444333344444444445555555555555555555555
Q ss_pred HHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHH
Q 005229 234 QSIEECSKEIPGKKEELISKGKTIAECSKEVELK 267 (707)
Q Consensus 234 ~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k 267 (707)
..+..|+++...++..+...+..+......|+..
T Consensus 165 RsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 165 RRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5555566666666655555555555555555544
No 85
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.16 E-value=4e-07 Score=109.43 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHH
Q 005229 8 KIMGLGQKRIGEF 20 (707)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (707)
.+++.++.....+
T Consensus 138 eqle~lqk~k~~l 150 (859)
T PF01576_consen 138 EQLEQLQKQKAKL 150 (859)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 86
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.16 E-value=0.0035 Score=65.96 Aligned_cols=98 Identities=12% Similarity=0.191 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005229 81 KVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFH 160 (707)
Q Consensus 81 ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele 160 (707)
++.+|..++...+.++...+.+......+-+....++.....+.+.++.++..+...+.....++..+.+.-..++.++.
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~ 154 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLK 154 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555566666666666666666666665555555555544
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 005229 161 SEEEKLELLQGKVRLHEN 178 (707)
Q Consensus 161 ~~e~~l~~le~el~~~~~ 178 (707)
.+-++...+..+...+..
T Consensus 155 ~l~~qr~ql~aq~qsl~a 172 (499)
T COG4372 155 TLAEQRRQLEAQAQSLQA 172 (499)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 443333333333333333
No 87
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.13 E-value=0.0073 Score=69.58 Aligned_cols=84 Identities=17% Similarity=0.278 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhch--hhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhh
Q 005229 201 VELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIP--GKKEELISKGKTIAECSKEVELKKNQLNLIQDKS 278 (707)
Q Consensus 201 le~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~--~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~l 278 (707)
...+-.++..+..+++.+..++..++..+..+..+++.+-+... .+-..|=++-+.|.....+|+..-.+-..++.++
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555444444444444444444444444422 1223344444555555555555555555666666
Q ss_pred hhhhhH
Q 005229 279 SLFQTR 284 (707)
Q Consensus 279 e~le~~ 284 (707)
..+.++
T Consensus 522 N~l~gk 527 (594)
T PF05667_consen 522 NSLTGK 527 (594)
T ss_pred HHHHHH
Confidence 666555
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.10 E-value=0.006 Score=66.27 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDK 120 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~ 120 (707)
...+.++..++.+|.....+...++++|..++.+|......+.+....+..+.+.|......+..+
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444443333333
No 89
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.10 E-value=0.035 Score=62.51 Aligned_cols=43 Identities=23% Similarity=0.480 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHH
Q 005229 296 ETHFDSLKKGLEDRLQDLELKEREFEKRVKEFELREKELDSIRK 339 (707)
Q Consensus 296 ~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~~~~~ 339 (707)
...+..+++.+......|+.+...+... ..|+..++++.-+..
T Consensus 316 ~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 316 KAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
Confidence 3345555666666666666655555544 556666555555444
No 90
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0023 Score=73.18 Aligned_cols=238 Identities=13% Similarity=0.120 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 72 YDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 72 ~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
+..-+...+..+.+...+..++..+.++...++.+++...+++.+.+.++.+++....+..+++.+..-++.++......
T Consensus 642 e~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~ 721 (970)
T KOG0946|consen 642 EEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSK 721 (970)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 33444555556666666666666666666666666665555555555555555555555555555555555554422222
Q ss_pred HHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHh
Q 005229 152 IKELSME---FHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKE 228 (707)
Q Consensus 152 i~~l~~e---le~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~e 228 (707)
...+... .....+.+..+..+...+..+.....+++...+.-+..+.+.............-....-+. +.+...+
T Consensus 722 ~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeq-v~El~~~ 800 (970)
T KOG0946|consen 722 QRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQ-VIELLKN 800 (970)
T ss_pred hhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHH-HHHHHHh
Confidence 2222111 11222334444444444444444444444433333333333332222111111111111111 1122222
Q ss_pred HHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005229 229 LRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLED 308 (707)
Q Consensus 229 l~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~ 308 (707)
+.....++.+++.++..++++++.+...+......++.....-..+-..... .+.++..+.+.|......+..
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~-------ieq~ls~l~~~~k~~~nli~~ 873 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKL-------IEQKLSNLQEKIKFGNNLIKE 873 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHH-------HHHHHHHHHHHhhhhhhHHHH
Confidence 4445555555555555555555555555555555555443322222111111 222233333345555555555
Q ss_pred HHHHHHHHH
Q 005229 309 RLQDLELKE 317 (707)
Q Consensus 309 ~~~eL~~~e 317 (707)
..+.+.+++
T Consensus 874 ltEk~~sl~ 882 (970)
T KOG0946|consen 874 LTEKISSLE 882 (970)
T ss_pred HhhhhhhHH
Confidence 555555544
No 91
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.07 E-value=0.05 Score=63.53 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 53 KCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ---LAFKESKISSMQTLIEENEGLLKDKEKLYDEVK 128 (707)
Q Consensus 53 ~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e---l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~ 128 (707)
+...++.++.+++..-..+-.+..+++.+--.|++++..++.. ++.++.+|..+..++.-+...++....-....+
T Consensus 77 ~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae 155 (717)
T PF09730_consen 77 ERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAE 155 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555444445555555555555555555555543 555555555555555555555555444444333
No 92
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.06 E-value=0.00071 Score=68.36 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005229 167 ELLQGKVRLHENEVESLEQKL 187 (707)
Q Consensus 167 ~~le~el~~~~~eL~~~e~el 187 (707)
..++.++..+..+++..+..+
T Consensus 62 ~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 62 SQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 93
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.04 E-value=0.014 Score=61.49 Aligned_cols=96 Identities=10% Similarity=0.116 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005229 56 AYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCE 135 (707)
Q Consensus 56 ~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le 135 (707)
.+...|..+..++...+.++...+.+-+....+.+.-..+-+..+.++...++.+......+....+..+.++.++..+-
T Consensus 78 di~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~ 157 (499)
T COG4372 78 DIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333444444444444444444444444444444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 005229 136 TKLECEKKELELTQSS 151 (707)
Q Consensus 136 ~el~~~~~Ele~~e~~ 151 (707)
.+...+..+..++...
T Consensus 158 ~qr~ql~aq~qsl~a~ 173 (499)
T COG4372 158 EQRRQLEAQAQSLQAS 173 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555554444444333
No 94
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.00 E-value=0.0013 Score=61.93 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005229 56 AYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKD 119 (707)
Q Consensus 56 ~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~ 119 (707)
.++.+..........+..+++.++.+...++.+|..+...+..++.++..+...+......+..
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444444444444444444444444433333
No 95
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.96 E-value=0.08 Score=61.88 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhc
Q 005229 194 QKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEI 243 (707)
Q Consensus 194 i~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El 243 (707)
|..+...+.+.+.+...+...+...+..++.-+..+.....++..|...+
T Consensus 267 iqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l 316 (717)
T PF09730_consen 267 IQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQL 316 (717)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443333
No 96
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.93 E-value=0.0022 Score=60.27 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=4.2
Q ss_pred HHHHHHHHhHHH
Q 005229 94 KQLAFKESKISS 105 (707)
Q Consensus 94 ~el~ele~ei~~ 105 (707)
.+++.++..+..
T Consensus 49 ~eld~~~~~l~~ 60 (143)
T PF12718_consen 49 EELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 97
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.91 E-value=0.014 Score=57.87 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLC 134 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~l 134 (707)
..++.++.++...+.++..+...+..--..-++.+..|...-.++- ..|..+..++..+...+...+.....+
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lp-------qll~~h~eEvr~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELP-------QLLQRHNEEVRVLRERLRKSQEQEREL 87 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333333333333333333333333 334444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005229 135 ETKLECEKKELELTQSSIKE 154 (707)
Q Consensus 135 e~el~~~~~Ele~~e~~i~~ 154 (707)
+..+.....++-.....+..
T Consensus 88 ~~klk~~~~el~k~~~~l~~ 107 (194)
T PF15619_consen 88 ERKLKDKDEELLKTKDELKH 107 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 98
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.067 Score=59.02 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=78.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 128 KNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRE 207 (707)
Q Consensus 128 ~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e 207 (707)
..+|+..+.+...+.+.+..++..+.+....+..+.+....+........++|..++..|+..++++-.+...+....+.
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666665555555555555555666666666667777777777777666666666666555444
Q ss_pred HH------HHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHH
Q 005229 208 LN------EIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECS 261 (707)
Q Consensus 208 ~~------e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~ 261 (707)
.. +....|..++.++..++.++......++++..=+...+++.....+.+.+..
T Consensus 410 ~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele 469 (654)
T KOG4809|consen 410 EDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE 469 (654)
T ss_pred hHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC
Confidence 32 2334556666666666666666666666655555555554444444444443
No 99
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.067 Score=59.01 Aligned_cols=17 Identities=6% Similarity=-0.257 Sum_probs=8.3
Q ss_pred hhhHHHHhhcCCchhhH
Q 005229 383 CKVFDTIKSARDPALLV 399 (707)
Q Consensus 383 ~e~~~al~~a~dpa~lV 399 (707)
.-..+++..+|+|+..|
T Consensus 616 ~~~~~~~~~~~ln~~d~ 632 (654)
T KOG4809|consen 616 SIGLAAVAMDVLNTGDV 632 (654)
T ss_pred HHHHHhcccCCCCCCcc
Confidence 33444555555555443
No 100
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.85 E-value=0.082 Score=58.60 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=59.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 5 RVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGE 84 (707)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~ 84 (707)
.++..++.+..=+.++++++=---.+|...-+++......+.-.-+..+++.++..+......+.++ ++...+.++..
T Consensus 208 ~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~L--eld~aeeel~~ 285 (570)
T COG4477 208 ALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQL--ELDEAEEELGL 285 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHHh--hhhhHHHHHHH
Confidence 3556666666777777777766667777777888888888765556666666666666555444433 45566666666
Q ss_pred HHHHHHHHHHHH
Q 005229 85 AQRSIEEQEKQL 96 (707)
Q Consensus 85 le~~i~e~~~el 96 (707)
++..|+.+-.-+
T Consensus 286 I~e~ie~lYd~l 297 (570)
T COG4477 286 IQEKIESLYDLL 297 (570)
T ss_pred HHHHHHHHHHHH
Confidence 666666665443
No 101
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.85 E-value=0.09 Score=62.23 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=10.9
Q ss_pred hcccCcHHHHHHHHHHhh
Q 005229 462 VAVENSLEVLGFLHLLAA 479 (707)
Q Consensus 462 ~~~~~~l~a~~fl~~l~~ 479 (707)
++|++.+-+++|+..|+.
T Consensus 553 S~Ge~~~~~la~~~al~~ 570 (650)
T TIGR03185 553 SAGERQILAIALLWGLAK 570 (650)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 444555666677666654
No 102
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.85 E-value=0.094 Score=59.13 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHH
Q 005229 302 LKKGLEDRLQDLELKEREFEKRVKEFELREKELD 335 (707)
Q Consensus 302 le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~ 335 (707)
+...++....++..++..+..+..+++..+..+.
T Consensus 308 ~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 308 LVEEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555566666666666665555544443
No 103
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.82 E-value=0.033 Score=64.70 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHH---HHHHHHhhhhc----ccCcHHHHHHHHHHhhhCCCC-----CCCHHHHHHHHH
Q 005229 438 EPEINAQVRDEAMKV---AGEWKKKMRVA----VENSLEVLGFLHLLAAYRLAP-----AFDREELESLLC 496 (707)
Q Consensus 438 ~~~~~~~v~~~A~~~---A~~Wk~~~~~~----~~~~l~a~~fl~~l~~fgi~~-----~f~~~el~~l~~ 496 (707)
+|..+..|..-.+.. |......+... .+......-.|+-+..||.-- +.+.++|-+||+
T Consensus 680 ~~e~~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~~lq~~~~~~eel~~~~~di~~e~l~~lld 750 (980)
T KOG0980|consen 680 SPEGSDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQYLQTLNQLGEELLPKELDIDQELLGNLLD 750 (980)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHhHHhccccchhhHHHHHHHHH
Confidence 555566666666666 44444444322 122345555667777776432 445566555554
No 104
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.82 E-value=0.013 Score=58.07 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHH
Q 005229 228 ELRFVQQSIEECSKEIPGKKEELISKGKTIAECSK 262 (707)
Q Consensus 228 el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~ 262 (707)
++.........+..++..+..++..+...|.+..+
T Consensus 158 ql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 158 QLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444444444444433
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.77 E-value=0.035 Score=53.81 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 110 IEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDS 189 (707)
Q Consensus 110 i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~ 189 (707)
-..+-..-+.++.+.+.+..++..++.+...+..+.+.+..++.++..+...+..++-..+.-+.....-+.+....+..
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e 162 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE 162 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33333333444444445555555555555555555555555555554443333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005229 190 MRKQQKKYFDDVELKKREL 208 (707)
Q Consensus 190 ~~~ei~el~~ele~k~~e~ 208 (707)
+..-+.++..-.+.++.++
T Consensus 163 L~~~ieEy~~~teeLR~e~ 181 (193)
T PF14662_consen 163 LKKTIEEYRSITEELRLEK 181 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 106
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.086 Score=58.16 Aligned_cols=30 Identities=23% Similarity=0.060 Sum_probs=12.9
Q ss_pred HHHhHHHHHHHHHHHhhhchhhHHhhhhhh
Q 005229 225 KDKELRFVQQSIEECSKEIPGKKEELISKG 254 (707)
Q Consensus 225 ~~~el~~~~~~le~l~~El~~l~~Ele~l~ 254 (707)
++.++.+.+-+..++..++.++++|=-+++
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 333444444444444444444444433333
No 107
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.76 E-value=0.035 Score=64.45 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=22.2
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHh
Q 005229 471 LGFLHLLAAYRLAPAFDREELESLLCIV 498 (707)
Q Consensus 471 ~~fl~~l~~fgi~~~f~~~el~~l~~~~ 498 (707)
-.-.||||+=.+..+++..-+.+|=.+.
T Consensus 878 AsTaQLVaASrVKA~k~S~~ld~L~~as 905 (980)
T KOG0980|consen 878 ASTAQLVAASRVKADKDSKKLDALEVAS 905 (980)
T ss_pred HHHHHHHHHHHhhccccchhhHHHHHHH
Confidence 3467899999999999988888875544
No 108
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.75 E-value=0.058 Score=58.81 Aligned_cols=7 Identities=29% Similarity=0.691 Sum_probs=3.7
Q ss_pred HHHHhhh
Q 005229 455 EWKKKMR 461 (707)
Q Consensus 455 ~Wk~~~~ 461 (707)
.||..+-
T Consensus 320 ~wkG~vi 326 (420)
T COG4942 320 RWKGMVI 326 (420)
T ss_pred cccceEE
Confidence 4666543
No 109
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.75 E-value=0.037 Score=65.29 Aligned_cols=43 Identities=5% Similarity=0.191 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 53 KCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 53 ~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e 95 (707)
.+..++.+...++...+.....+..++.++..++++++.+...
T Consensus 182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555433
No 110
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.72 E-value=0.08 Score=54.65 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhHHHhHHHHHHHHHH
Q 005229 316 KEREFEKRVKEFELREKELDSIRKA 340 (707)
Q Consensus 316 ~e~~~~~~~~E~e~~e~~l~~~~~~ 340 (707)
++..+...+.++.....++--++..
T Consensus 276 lEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 276 LEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777666666555443
No 111
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.71 E-value=0.036 Score=58.02 Aligned_cols=141 Identities=20% Similarity=0.200 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 131 LMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNE 210 (707)
Q Consensus 131 le~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e 210 (707)
++.+..++..+..+-..++.....+..+-...+++ .+.-+..+-+++.....++..+..++.....+....++++..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---EqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---EQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554443333322 111133344444444444444444444444444444444444
Q ss_pred HHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHH
Q 005229 211 IRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLI 274 (707)
Q Consensus 211 ~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l 274 (707)
+..++-.+++++..+-.+-+.+.+.+.....-...+..|+..++..+.++..-+.+.+.++..+
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444455555566666666665555555555444
No 112
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.082 Score=54.24 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005229 57 YQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENE 114 (707)
Q Consensus 57 ~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~ 114 (707)
...++..+.+....++.+++.+..++..+..++.+...++.+.+.++..++..|..++
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333333
No 113
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.65 E-value=0.082 Score=52.70 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=40.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 122 KLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKY 197 (707)
Q Consensus 122 ~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el 197 (707)
........++..+..+.+.+...+.+++.....+-...+....-+...+..-..+.+.+.+....+....+++..+
T Consensus 62 ~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 62 KQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred hhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555556666666666666665555555555555555555555555555555555555444444333
No 114
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.63 E-value=0.039 Score=65.11 Aligned_cols=20 Identities=5% Similarity=-0.079 Sum_probs=8.6
Q ss_pred HHHhhcCCCCCchHHHHHHH
Q 005229 35 SVSLNLKNKPSSAQEWINKC 54 (707)
Q Consensus 35 ~~el~~~~~~l~~~l~~~~~ 54 (707)
+.++.+--+-..+.|+.+-.
T Consensus 149 QDkV~EFa~L~pi~LL~eTe 168 (1072)
T KOG0979|consen 149 QDKVKEFARLSPIELLVETE 168 (1072)
T ss_pred HHHHHHHHcCChHHHHHHHH
Confidence 33444444444444444433
No 115
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.60 E-value=0.025 Score=59.19 Aligned_cols=142 Identities=11% Similarity=0.174 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhh
Q 005229 174 RLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISK 253 (707)
Q Consensus 174 ~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l 253 (707)
+.++.++..++.+-..+..+...+..+....+.+-..+ +...-+++......+..+..++.....++....+|+.++
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333333331111 333444555555566666666666666666666677777
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 254 GKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKER 318 (707)
Q Consensus 254 ~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~ 318 (707)
..++...++++...-.+.+++...+...+..-..+..++.++.+.+......|.+-.++|..+.+
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 77777777777777777777777777766666667777777777788877777777777766543
No 116
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.57 E-value=0.35 Score=59.48 Aligned_cols=24 Identities=4% Similarity=-0.029 Sum_probs=16.9
Q ss_pred hhhHHHHh---hcCCcccccccccccC
Q 005229 518 PGLQCSTT---AEGRSAPSMLVGTSAP 541 (707)
Q Consensus 518 ~~~i~~li---~~g~~~~a~~~~~~~~ 541 (707)
-++|..|= -+|.-|+-|.+.+-.+
T Consensus 1130 N~iI~elW~~tYrG~Did~IrIrsD~~ 1156 (1294)
T KOG0962|consen 1130 NRIIRELWRKTYRGTDIDYIKIRSDSV 1156 (1294)
T ss_pred HHHHHHHHHhccCCCCcceEEEeeccc
Confidence 45566654 5799999888877554
No 117
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.53 E-value=2e-05 Score=93.98 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.7
Q ss_pred CHHHHHHHH
Q 005229 442 NAQVRDEAM 450 (707)
Q Consensus 442 ~~~v~~~A~ 450 (707)
+|....++.
T Consensus 555 NP~~~~~~~ 563 (722)
T PF05557_consen 555 NPTSKAEQI 563 (722)
T ss_dssp -HHHHHHHH
T ss_pred CcHHHHHHH
Confidence 455544433
No 118
>PRK09039 hypothetical protein; Validated
Probab=97.53 E-value=0.027 Score=61.03 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKIS 104 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~ 104 (707)
+...+....+++..++.+|.++-.-+..-......++..+..+..++...+....
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~ 98 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERS 98 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555555555555555555555555444444333
No 119
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.50 E-value=0.13 Score=65.79 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhh
Q 005229 468 LEVLGFLHLLAAY 480 (707)
Q Consensus 468 l~a~~fl~~l~~f 480 (707)
.++..|..+|-.-
T Consensus 1166 ~~t~~~~~~L~~~ 1178 (1353)
T TIGR02680 1166 PTGLALRRLLRTD 1178 (1353)
T ss_pred hhHHHHHHHHhcC
Confidence 4444576666554
No 120
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.48 E-value=0.16 Score=64.80 Aligned_cols=91 Identities=10% Similarity=0.088 Sum_probs=70.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 5 RVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGE 84 (707)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~ 84 (707)
+|+..+..+..++..+..++..+...+..+..+...-....++.-....+......+.....++.....+..........
T Consensus 746 el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~ 825 (1353)
T TIGR02680 746 ELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQ 825 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777788888888888887777777777878888888888888888888888888777
Q ss_pred HHHHHHHHHHH
Q 005229 85 AQRSIEEQEKQ 95 (707)
Q Consensus 85 le~~i~e~~~e 95 (707)
....+.....+
T Consensus 826 a~~~l~~aaa~ 836 (1353)
T TIGR02680 826 ARRELERDAAD 836 (1353)
T ss_pred HHHHHHHHHhc
Confidence 77777777665
No 121
>PRK11281 hypothetical protein; Provisional
Probab=97.46 E-value=0.21 Score=61.86 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDP 222 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~ei 222 (707)
...++.++.-++.++.-.+.++.+.....+-++..++....++...+..+..++..+
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~i 250 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAI 250 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333333333333333333333333333
No 122
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.44 E-value=0.27 Score=53.48 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005229 72 YDEVELREKKVGEAQRSIEEQE---KQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELT 148 (707)
Q Consensus 72 ~~e~~~~~~ei~~le~~i~e~~---~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~ 148 (707)
..++..+..+...|...|.+.. ..+..++.+-..++.....+......++...+..-..|+.++.+++...++|..+
T Consensus 270 ~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L 349 (622)
T COG5185 270 NTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKAL 349 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444433 2356666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhh
Q 005229 149 QSSIKELSMEF 159 (707)
Q Consensus 149 e~~i~~l~~el 159 (707)
+..++.+...+
T Consensus 350 ~~~~d~L~~q~ 360 (622)
T COG5185 350 QSNIDELHKQL 360 (622)
T ss_pred HhhHHHHHHHH
Confidence 66666665543
No 123
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.42 E-value=0.32 Score=54.05 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHH
Q 005229 195 KKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLI 274 (707)
Q Consensus 195 ~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l 274 (707)
..+.++++.+.+.+..+...+..-..-...++..++.+.+.+..++++.......+.++++.=-++...++..+..+..+
T Consensus 350 r~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 350 RKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444555555555555555555555555555555554444444455444444444
Q ss_pred HHhhhh--hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 005229 275 QDKSSL--FQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVKEFELR 330 (707)
Q Consensus 275 ~~~le~--le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~ 330 (707)
.+.++. +=|-=..|-.-+.....+++.+..+|.++--.|+......+.++..+...
T Consensus 430 kR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l 487 (570)
T COG4477 430 KRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTL 487 (570)
T ss_pred HHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 443332 00000112222233333444455555544444555555555554444333
No 124
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.42 E-value=0.4 Score=55.00 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=33.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHH
Q 005229 289 LKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVKEFELREKELDS 336 (707)
Q Consensus 289 ~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~~ 336 (707)
...|.+++.-+..+-..|-.+...|+.+..+.-...-.++..+..+.+
T Consensus 384 ~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 384 SSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKE 431 (511)
T ss_pred cCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence 346888888888888888777777777777666666666666655544
No 125
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.41 E-value=0.64 Score=57.25 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005229 132 MLCETKLECEKKELELTQSSIKELSMEFHSE 162 (707)
Q Consensus 132 e~le~el~~~~~Ele~~e~~i~~l~~ele~~ 162 (707)
.+++.++..+.+++......++++...+..+
T Consensus 881 ~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~ 911 (1294)
T KOG0962|consen 881 QQLEEDIEELSEEITRLDSKVKELLERIQPL 911 (1294)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHhhhcch
Confidence 3444444455555544444444444443333
No 126
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.40 E-value=3.5e-05 Score=91.66 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHhhHHH
Q 005229 6 VEKIMGLGQKRIGEFNCELELKENELNS 33 (707)
Q Consensus 6 ~~~~~~~~~~~~~~~~~eL~l~e~eL~~ 33 (707)
++.++..+..+...+..+...+...+..
T Consensus 198 l~~~i~~L~~e~~~L~~e~~~l~~~~~~ 225 (713)
T PF05622_consen 198 LEKQISDLQEEKESLQSENEELQERLSQ 225 (713)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHhHHHhhhhhhhhhcccCC
Confidence 3444444444444444444444433333
No 127
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.42 Score=54.73 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 005229 130 SLMLCETKLECEKKELE 146 (707)
Q Consensus 130 ele~le~el~~~~~Ele 146 (707)
+++.++..+....+++.
T Consensus 252 el~~l~~a~~q~~ee~~ 268 (716)
T KOG4593|consen 252 ELEELERALSQLREELA 268 (716)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 128
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.37 E-value=0.19 Score=50.20 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 293 KEKETHFDSLKKGLEDRLQDLELKEREFEKRVK 325 (707)
Q Consensus 293 ~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~ 325 (707)
+-.+-...|++..|+....+.+.+-+-++..|.
T Consensus 171 kk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~ 203 (207)
T PF05010_consen 171 KKEEMKVQSLEESLEQKTKENEELTKICDELIS 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555666666555555555555555444
No 129
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.52 Score=54.77 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=4.0
Q ss_pred HhhhCCC
Q 005229 401 HAMSGFY 407 (707)
Q Consensus 401 d~~~~~~ 407 (707)
+||..+|
T Consensus 668 ~Cvq~r~ 674 (698)
T KOG0978|consen 668 ECVQTRY 674 (698)
T ss_pred HHHHHHH
Confidence 4555555
No 130
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.34 E-value=0.00011 Score=87.51 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=17.8
Q ss_pred CCccchhhhHHHHhhcCCcccccccc
Q 005229 512 GFADKVPGLQCSTTAEGRSAPSMLVG 537 (707)
Q Consensus 512 gl~~k~~~~i~~li~~g~~~~a~~~~ 537 (707)
+|...+++.|+.-|...+.||++.-+
T Consensus 687 ~~~~~~~~~i~~~v~~~~siP~FLaa 712 (722)
T PF05557_consen 687 EFSPELEDLIEFWVEERNSIPAFLAA 712 (722)
T ss_dssp CCHHCTHHHHHHHTTTS--HHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCChhHHHHH
Confidence 56677888888888888888876443
No 131
>PRK09039 hypothetical protein; Validated
Probab=97.34 E-value=0.059 Score=58.39 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=7.8
Q ss_pred CCchhhHHHhhhCCCC
Q 005229 393 RDPALLVLHAMSGFYP 408 (707)
Q Consensus 393 ~dpa~lVLd~~~~~~~ 408 (707)
.+|.++.....+.+.|
T Consensus 305 i~~~ri~~~G~G~~~P 320 (343)
T PRK09039 305 VPADRLAAAGFGEFQP 320 (343)
T ss_pred CCHHHeEEEEeCCcCc
Confidence 4555655444444443
No 132
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.33 E-value=0.23 Score=52.62 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhh
Q 005229 173 VRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELIS 252 (707)
Q Consensus 173 l~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~ 252 (707)
+.+...+...+..++..+.+++.+++.+++.++..+......-........- .+.+.+...++.+...+..++-++.+
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555555555555444444333332222111 44444555555555566666666666
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHhhhhh
Q 005229 253 KGKTIAECSKEVELKKNQLNLIQDKSSLF 281 (707)
Q Consensus 253 l~~~l~e~~~~le~k~~ele~l~~~le~l 281 (707)
+..+.++...+.+..+....++..++..+
T Consensus 152 ~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 152 LLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666655543
No 133
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.32 E-value=0.88 Score=56.91 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=10.3
Q ss_pred HhhhCCccchhhhHHH
Q 005229 508 RRTLGFADKVPGLQCS 523 (707)
Q Consensus 508 ~~~lgl~~k~~~~i~~ 523 (707)
.+++|++.+++++.+.
T Consensus 1007 g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 1007 GKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCEEEEEecHHHHHHh
Confidence 4556777776666655
No 134
>PRK11281 hypothetical protein; Provisional
Probab=97.32 E-value=0.85 Score=56.60 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005229 302 LKKGLEDRLQDLELKEREFEKRVKEF 327 (707)
Q Consensus 302 le~~L~~~~~eL~~~e~~~~~~~~E~ 327 (707)
+..-+..|.+=|+.+.+.++..+.+.
T Consensus 405 l~~ll~~r~~LL~~l~~~~~~~l~~~ 430 (1113)
T PRK11281 405 LLQLLDERRELLDQLNKQLNNQLNLA 430 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666655544
No 135
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.32 E-value=0.84 Score=56.50 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005229 302 LKKGLEDRLQDLELKEREFEKRVKEFE 328 (707)
Q Consensus 302 le~~L~~~~~eL~~~e~~~~~~~~E~e 328 (707)
+..-++.+.+=|+.+.+.++..+.+.-
T Consensus 381 l~~ll~~rr~LL~~L~~~~~~~l~~l~ 407 (1109)
T PRK10929 381 LDAQLRTQRELLNSLLSGGDTLILELT 407 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677777777777777776653
No 136
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.28 E-value=0.22 Score=58.96 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELK 204 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k 204 (707)
...++..+..+..+++..+.++.+.+..+.+++.++...
T Consensus 605 K~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ 643 (769)
T PF05911_consen 605 KEELEMELASCQDQLESLKNQLKESEQKLEELQSELESA 643 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444443333333333
No 137
>PF13514 AAA_27: AAA domain
Probab=97.23 E-value=1.2 Score=56.38 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 48 QEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQL 96 (707)
Q Consensus 48 ~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el 96 (707)
..+.........+..........+..++.....++...+.........+
T Consensus 655 ~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1111)
T PF13514_consen 655 AALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEAL 703 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333333333333333333333444444443333333333333333
No 138
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.46 Score=51.60 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=22.0
Q ss_pred HhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHH
Q 005229 218 LNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECS 261 (707)
Q Consensus 218 l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~ 261 (707)
..+.|.++...+...++.+-.+..+-..+++++.++...+...-
T Consensus 387 ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsf 430 (521)
T KOG1937|consen 387 YTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSF 430 (521)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33444444444444555555555555555555555555544333
No 139
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.21 E-value=0.43 Score=51.48 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSMRKQQKKY 197 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~~~ei~el 197 (707)
+..++.++.....+|+.++.++.+++.++..+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l 242 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEEL 242 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 140
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.20 E-value=8.2e-05 Score=88.57 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 005229 52 NKCQAYQKELRLWKN 66 (707)
Q Consensus 52 ~~~~~~~~el~~l~~ 66 (707)
.....++++++.++.
T Consensus 291 ~~a~~LrDElD~lR~ 305 (713)
T PF05622_consen 291 REARALRDELDELRE 305 (713)
T ss_dssp ---------------
T ss_pred HHHHHHhhhHHHHHH
Confidence 344555555555544
No 141
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.20 E-value=0.27 Score=52.08 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHH
Q 005229 229 LRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVE 265 (707)
Q Consensus 229 l~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le 265 (707)
++.+--+-.-+...+..+++|++..+..+.....-++
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333344444444444444444444444444444
No 142
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.19 E-value=0.45 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 299 FDSLKKGLEDRLQDLELKEREFEK 322 (707)
Q Consensus 299 ~~~le~~L~~~~~eL~~~e~~~~~ 322 (707)
|.+...+++.....+..+++.+..
T Consensus 239 F~tfk~Emekm~Kk~kklEKE~~~ 262 (309)
T PF09728_consen 239 FETFKKEMEKMSKKIKKLEKENQT 262 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 143
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.6 Score=51.85 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=10.6
Q ss_pred hHHHHHHHHhhhHhhHHHHH
Q 005229 16 RIGEFNCELELKENELNSLS 35 (707)
Q Consensus 16 ~~~~~~~eL~l~e~eL~~~~ 35 (707)
....++.+++.+.++|.+..
T Consensus 9 ~ve~lr~eierLT~el~q~t 28 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTT 28 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555543
No 144
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.08 E-value=0.49 Score=51.61 Aligned_cols=61 Identities=15% Similarity=0.011 Sum_probs=41.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005229 122 KLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVES 182 (707)
Q Consensus 122 ~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~ 182 (707)
.+.=.+..|-..++..+..+.+-+...++.+.+.+.+.+.+.-++..++..+..++.+...
T Consensus 376 edKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 376 EDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333445566667777777777788888887777777777766677777776666655443
No 145
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.06 E-value=0.53 Score=49.36 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 53 KCQAYQKELRLWKNLIEECYDEVELREKKVGEAQ 86 (707)
Q Consensus 53 ~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le 86 (707)
++..++.+-..++..+.....+...+..++..|.
T Consensus 28 ~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr 61 (310)
T PF09755_consen 28 RIESLQQENRVLKRELETEKARCKHLQEENRALR 61 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333333333333333333333
No 146
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.81 Score=49.78 Aligned_cols=50 Identities=12% Similarity=0.311 Sum_probs=28.2
Q ss_pred HHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 263 EVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLE 314 (707)
Q Consensus 263 ~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~ 314 (707)
.-...+.++..+++++..-+.+ ..-..++.+..++..+.+..+.++.++.
T Consensus 470 ~tg~~~revrdlE~qI~~E~~k--~~l~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 470 ETGALKREVRDLESQIYVEEQK--QYLKSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HcchHHHHHHHHHHHHhHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334555555555555542222 1234556666677777777777776654
No 147
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.94 E-value=0.41 Score=56.79 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=55.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHH
Q 005229 156 SMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQS 235 (707)
Q Consensus 156 ~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~ 235 (707)
..+...++..+.....++..+..+|.+.+..+..++.++....+.-...+.++......+..++..+...+.++..+...
T Consensus 602 e~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~K 681 (769)
T PF05911_consen 602 ESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSK 681 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33333333334444444444444444444455555555444444444555555555555555555555555555555555
Q ss_pred HHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHH
Q 005229 236 IEECSKEIPGKKEELISKGKTIAECSKEVELKK 268 (707)
Q Consensus 236 le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~ 268 (707)
+..|+.++..-+.--+........++.+++...
T Consensus 682 i~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 682 ISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 555555555544444444444444444444443
No 148
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=96.93 E-value=2 Score=53.83 Aligned_cols=12 Identities=8% Similarity=0.146 Sum_probs=7.0
Q ss_pred CCchhHHHHHHh
Q 005229 362 SSGRYLQFLLNQ 373 (707)
Q Consensus 362 ~~~~~l~~~~~~ 373 (707)
.+|..|+.|+..
T Consensus 889 ~~g~kf~~~~~~ 900 (1047)
T PRK10246 889 KEGDKFRKFAQG 900 (1047)
T ss_pred ccCchHHHHHHH
Confidence 345566676654
No 149
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.93 E-value=1.9 Score=53.53 Aligned_cols=33 Identities=12% Similarity=-0.006 Sum_probs=21.2
Q ss_pred HHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhc
Q 005229 8 KIMGLGQKRIGEFNCELELKENELNSLSVSLNL 40 (707)
Q Consensus 8 ~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~ 40 (707)
+.++..+.+.+.+++.++..-.++..+++++..
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 455556666666666676666666666666654
No 150
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.90 E-value=0.44 Score=47.01 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 291 ELKEKETHFDSLKKGLEDRLQDLELKEREFE 321 (707)
Q Consensus 291 ~~~el~~~~~~le~~L~~~~~eL~~~e~~~~ 321 (707)
-|.+-.+..=-.++.|..-.-+|-...+.++
T Consensus 167 ~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE 197 (202)
T PF06818_consen 167 TWQEEKEKVIRYQKQLQQNYVQMYQRNQALE 197 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4655555555555555544444444444433
No 151
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.86 E-value=0.27 Score=48.09 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=48.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 122 KLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDV 201 (707)
Q Consensus 122 ~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~el 201 (707)
-+|..++.+-..+..+|++...++..+...+...-.-+....+.+..+..++..+..+|...+..+..++.++.....+.
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777777777777766666665555554444444555555555555555554444444444444444444
Q ss_pred HHHHHHHHH
Q 005229 202 ELKKRELNE 210 (707)
Q Consensus 202 e~k~~e~~e 210 (707)
......+..
T Consensus 122 ~k~~~~~~~ 130 (177)
T PF13870_consen 122 DKLRKQNKK 130 (177)
T ss_pred HHHHHHHHH
Confidence 443333333
No 152
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.81 E-value=1.1 Score=49.00 Aligned_cols=123 Identities=10% Similarity=0.091 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHH
Q 005229 196 KYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQ 275 (707)
Q Consensus 196 el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~ 275 (707)
++.+.+..+..-+.+.++.+.+..++-+.++-++..++...-.|+..+..--++....-.+.-+..+-|..+..++++++
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ 466 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ 466 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33344444444444445555555555555555555555555555555544444444444455566666666666666666
Q ss_pred HhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 276 DKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKEREFE 321 (707)
Q Consensus 276 ~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~ 321 (707)
.....++.. ....+.-|....+..++++-.+.+++..-++++.
T Consensus 467 ~lkgelEka---t~SALdlLkrEKe~~EqefLslqeEfQk~ekenl 509 (527)
T PF15066_consen 467 QLKGELEKA---TTSALDLLKREKETREQEFLSLQEEFQKHEKENL 509 (527)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 655555433 1223344444455555555555555555555444
No 153
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.80 E-value=0.53 Score=50.26 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH----HHhHHHHHHHHHHHh
Q 005229 165 KLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASK----DKELRFVQQSIEECS 240 (707)
Q Consensus 165 ~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~----~~el~~~~~~le~l~ 240 (707)
.+..+++++.....++..+..++.+++.++..+...|+....++.++..+|..+++.++.. ..++..++..+..++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555555555555555555555555555555544332 234444444444444
No 154
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.79 E-value=0.58 Score=52.06 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=4.3
Q ss_pred HHHHHhhhHhhH
Q 005229 20 FNCELELKENEL 31 (707)
Q Consensus 20 ~~~eL~l~e~eL 31 (707)
++.++..++.++
T Consensus 86 l~~~~~~l~a~~ 97 (423)
T TIGR01843 86 LESQVLRLEAEV 97 (423)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 155
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.77 E-value=0.38 Score=53.58 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 005229 174 RLHENEVESLEQKLDS 189 (707)
Q Consensus 174 ~~~~~eL~~~e~el~~ 189 (707)
...+.++...+.++..
T Consensus 206 ~~~~~~l~~~~~~l~~ 221 (423)
T TIGR01843 206 AEAQGELGRLEAELEV 221 (423)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3333333333333333
No 156
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.75 E-value=0.71 Score=46.11 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005229 88 SIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSL 131 (707)
Q Consensus 88 ~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~el 131 (707)
+|.+.+......++.+.++..+...+..-|...+.+...++..+
T Consensus 35 ei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 35 EIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 157
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.74 E-value=1.6 Score=50.05 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=37.3
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 005229 6 VEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKC-----QAYQKELRLWKNLIEECY 72 (707)
Q Consensus 6 ~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~-----~~~~~el~~l~~~i~e~~ 72 (707)
+..+...+..++.++..++..+..+|..++.+ ....++...-..++ ..+++.+..+...+....
T Consensus 107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~---~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~ 175 (511)
T PF09787_consen 107 LSSELAVLKIRLQELDQELRRLRRQLEELQNE---KSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKRED 175 (511)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 44566677777777788888777777777221 12222222233333 666776666666555443
No 158
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.73 E-value=0.28 Score=57.05 Aligned_cols=44 Identities=9% Similarity=0.051 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQE 93 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~ 93 (707)
+...+.....++..+...+.++..+......++..++-++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555
No 159
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.62 E-value=0.22 Score=50.64 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 005229 439 PEINAQVRDEAMKVAGEWKKKM 460 (707)
Q Consensus 439 ~~~~~~v~~~A~~~A~~Wk~~~ 460 (707)
+..++...++.+..-.+.+++|
T Consensus 273 ~s~~s~l~dQLK~qNQEL~ski 294 (307)
T PF10481_consen 273 NSSSSQLLDQLKAQNQELRSKI 294 (307)
T ss_pred CCCchHHHHHHHHHhHHHHHHH
Confidence 3445555555566666666665
No 160
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.59 E-value=2.1 Score=49.36 Aligned_cols=17 Identities=0% Similarity=-0.062 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005229 199 DDVELKKRELNEIRKYI 215 (707)
Q Consensus 199 ~ele~k~~e~~e~~~ei 215 (707)
.-+...++.+..+-..+
T Consensus 306 ~LL~~WREKVFaLmVQL 322 (739)
T PF07111_consen 306 QLLSRWREKVFALMVQL 322 (739)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444333
No 161
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.59 E-value=0.54 Score=54.75 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.3
Q ss_pred chhhHHHh
Q 005229 395 PALLVLHA 402 (707)
Q Consensus 395 pa~lVLd~ 402 (707)
|.-+|||=
T Consensus 463 ~~~lilDE 470 (563)
T TIGR00634 463 VTTLIFDE 470 (563)
T ss_pred CCEEEEEC
Confidence 34444443
No 162
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.56 E-value=2.9 Score=50.64 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005229 445 VRDEAMKVAGEWKKKMR 461 (707)
Q Consensus 445 v~~~A~~~A~~Wk~~~~ 461 (707)
.-+.|......|+.-+.
T Consensus 853 ~~~~~~~~~~~~~~~~~ 869 (1041)
T KOG0243|consen 853 LLENAESQVDECKEAIE 869 (1041)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33556666666666653
No 163
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=96.54 E-value=0.34 Score=53.31 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 131 LMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGK-VRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELN 209 (707)
Q Consensus 131 le~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~e-l~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~ 209 (707)
++.+..++....++...+..+...++.|--.. ...++. +..+.+++.+...++..+.+++..+.+++....+++.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~----~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~s 236 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTY----EEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENS 236 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666555555555542222 111222 2245555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHH
Q 005229 210 EIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQ 275 (707)
Q Consensus 210 e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~ 275 (707)
.+..+|-.+.+++.-..-+.+.+...+.....-...+..|+.+++.++.++...+.+.+.+++.+.
T Consensus 237 kLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 237 KLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555555555555555555555555555555666666777777777777777776666655443
No 164
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.52 E-value=0.25 Score=50.23 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 108 TLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKL 187 (707)
Q Consensus 108 ~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el 187 (707)
-.|+.++..+.......+.-..+...++.+...+.+..+.++..-+.+..++...+.++.-++..+......|+.++.++
T Consensus 39 fQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 39 FQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444555555555555555555555555544444444444444444444444433333
Q ss_pred HHHHH
Q 005229 188 DSMRK 192 (707)
Q Consensus 188 ~~~~~ 192 (707)
..++.
T Consensus 119 kr~Ks 123 (307)
T PF10481_consen 119 KRCKS 123 (307)
T ss_pred HHHHH
Confidence 33333
No 165
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.46 E-value=0.2 Score=60.43 Aligned_cols=51 Identities=18% Similarity=0.078 Sum_probs=29.3
Q ss_pred hcccCcHHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHhhhcchhhHHHhhhCCccchhhhHHHHh
Q 005229 462 VAVENSLEVLGFLHLLAAYRLAPAF-DREELESLLCIVAQHRQTPKLRRTLGFADKVPGLQCSTT 525 (707)
Q Consensus 462 ~~~~~~l~a~~fl~~l~~fgi~~~f-~~~el~~l~~~~~~~~~~~~l~~~lgl~~k~~~~i~~li 525 (707)
+|.|++.-|..|-..++.-|-..-+ |.| -+.|.+...+|+.+ -+++.+.|.
T Consensus 556 ~G~GKTt~a~nLA~~lA~~g~rvLlID~D------------~~~~~l~~~~~~~~-~~gl~~~l~ 607 (754)
T TIGR01005 556 PVLGKSDIEANAAALIASGGKRALLIDAD------------GRKAALSQILVARE-VSGLLDLLA 607 (754)
T ss_pred CCCChhHHHHHHHHHHHhCCCeEEEEeCC------------CCchhHHHHhCCcc-cCChHHHHc
Confidence 4556788888888888766642221 332 22344566666543 456766664
No 166
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.43 E-value=0.42 Score=53.73 Aligned_cols=70 Identities=26% Similarity=0.228 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005229 102 KISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQG 171 (707)
Q Consensus 102 ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~ 171 (707)
+|.++..-|++....|...++.++.--.....++.+.-.+-.++..++=++..++++-.+.|+++...++
T Consensus 140 KIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~ 209 (861)
T KOG1899|consen 140 KIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSEN 209 (861)
T ss_pred hHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHH
Confidence 3334444444444445555555444444445566666666666666655555555553333333333333
No 167
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.39 E-value=1.2 Score=44.12 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=11.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 127 VKNSLMLCETKLECEKKELELTQSSIKELS 156 (707)
Q Consensus 127 l~~ele~le~el~~~~~Ele~~e~~i~~l~ 156 (707)
...+++..+.++.....+.+.+...+..+.
T Consensus 64 K~~ELE~ce~ELqr~~~Ea~lLrekl~~le 93 (202)
T PF06818_consen 64 KQLELEVCENELQRKKNEAELLREKLGQLE 93 (202)
T ss_pred hhHhHHHhHHHHHHHhCHHHHhhhhhhhhH
Confidence 333333333333333333333333333333
No 168
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.39 E-value=1.2 Score=44.42 Aligned_cols=103 Identities=16% Similarity=0.255 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchh
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPG 245 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~ 245 (707)
+.++++++.+........+..+.++..+...+..-+...+.++.++...+...+++ ...+...+.++..+.+++..
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd----K~~L~~~k~rl~~~ek~l~~ 104 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD----KQSLQNLKARLKELEKELKD 104 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444433222 22333344444445555555
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHHhhh
Q 005229 246 KKEELISKGKTIAECSKEVELKKNQLN 272 (707)
Q Consensus 246 l~~Ele~l~~~l~e~~~~le~k~~ele 272 (707)
++-+.+.+...+.....+.+.+...++
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544444
No 169
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.37 E-value=2 Score=46.58 Aligned_cols=81 Identities=15% Similarity=0.029 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 75 VELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKE 154 (707)
Q Consensus 75 ~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~ 154 (707)
...+..++..+++++.++..+-......-..++.+.-.+......++..+......-++.-.+-+....||..+..+-+.
T Consensus 217 r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReas 296 (502)
T KOG0982|consen 217 RIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREAS 296 (502)
T ss_pred hhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555432222233333333333333333334444333333333333333444444444433333
Q ss_pred H
Q 005229 155 L 155 (707)
Q Consensus 155 l 155 (707)
+
T Consensus 297 l 297 (502)
T KOG0982|consen 297 L 297 (502)
T ss_pred H
Confidence 3
No 170
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.36 E-value=0.81 Score=42.48 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=4.3
Q ss_pred hHHHHHHHHHHH
Q 005229 102 KISSMQTLIEEN 113 (707)
Q Consensus 102 ei~~l~~~i~e~ 113 (707)
.+..++..+...
T Consensus 25 ~~~~~~~dl~~q 36 (132)
T PF07926_consen 25 QLQSLREDLESQ 36 (132)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 171
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.35 E-value=0.77 Score=52.55 Aligned_cols=20 Identities=5% Similarity=0.049 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 005229 441 INAQVRDEAMKVAGEWKKKM 460 (707)
Q Consensus 441 ~~~~v~~~A~~~A~~Wk~~~ 460 (707)
.++..+..++.--.-|=-.+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~ 483 (498)
T TIGR03007 464 ATPEERRRRRRRLAAFLASA 483 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554433
No 172
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.34 E-value=0.92 Score=51.92 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=15.9
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHHHHhhhHHH
Q 005229 245 GKKEELISKGKTIAECSKEVELKKNQLNLIQ 275 (707)
Q Consensus 245 ~l~~Ele~l~~~l~e~~~~le~k~~ele~l~ 275 (707)
....++..++.+++......+.....++..+
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555554443
No 173
>PRK10869 recombination and repair protein; Provisional
Probab=96.28 E-value=0.95 Score=52.46 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEK 94 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~ 94 (707)
+...+...-.++..+...++++.........++..++-+++++..
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 444555555666666666666666666666666666666666653
No 174
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.23 E-value=0.47 Score=56.36 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=14.8
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 005229 248 EELISKGKTIAECSKEVELKKNQLNLIQD 276 (707)
Q Consensus 248 ~Ele~l~~~l~e~~~~le~k~~ele~l~~ 276 (707)
.+.+.++..+.+.-.+|+....+++.+..
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554443
No 175
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.22 E-value=4.5 Score=49.13 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=27.3
Q ss_pred HHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 18 GEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSI 89 (707)
Q Consensus 18 ~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i 89 (707)
+++..||+.+..+|-..+....-. ....+|.....++.....+|+++..++..+++++..+....
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvy-------isee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~ 471 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVY-------ISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELY 471 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceE-------echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554443332211 12233333334444444444444444444444444444333
No 176
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=3.4 Score=47.66 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005229 131 LMLCETKLECEKKELELTQSSIKELSMEF 159 (707)
Q Consensus 131 le~le~el~~~~~Ele~~e~~i~~l~~el 159 (707)
++.+...+...-.+++..+........++
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee~ 267 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREEL 267 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444443443
No 177
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.19 E-value=0.41 Score=44.49 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=43.9
Q ss_pred cChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHH
Q 005229 220 QDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHF 299 (707)
Q Consensus 220 ~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~ 299 (707)
.++..........+...+.-...+...-+.+..++.++......+...+.+.+.....+... ...|.+-+..+
T Consensus 31 ~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~-------e~sw~~qk~~l 103 (132)
T PF07926_consen 31 EDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEES-------EASWEEQKEQL 103 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHH
Confidence 33333333333333333333333334444444444444444444444444444444333332 23366655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 300 DSLKKGLEDRLQDLELKEREFEKR 323 (707)
Q Consensus 300 ~~le~~L~~~~~eL~~~e~~~~~~ 323 (707)
..--..+..+..+|.....-+-..
T Consensus 104 e~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 104 EKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544433
No 178
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.08 E-value=1.3 Score=53.51 Aligned_cols=54 Identities=6% Similarity=-0.015 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhhhchhhHHh---hhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhh
Q 005229 228 ELRFVQQSIEECSKEIPGKKEE---LISKGKTIAECSKEVELKKNQLNLIQDKSSLF 281 (707)
Q Consensus 228 el~~~~~~le~l~~El~~l~~E---le~l~~~l~e~~~~le~k~~ele~l~~~le~l 281 (707)
++.......+.+...+..++.+ +.....++..++++.+..+.-++.+-...+..
T Consensus 346 ~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 346 QADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333343333333332 23334556666666666666666555555443
No 179
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.03 E-value=1.3 Score=49.90 Aligned_cols=140 Identities=15% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLC 134 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~l 134 (707)
.++++.+..++...+.+.-+...+..++..-..+|.+++.=|++...++......+..---..-.++..+-.+..++..+
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeL 186 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSEL 186 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHh
Confidence 33444444444444444444444444444444444444444444444444433333322222234444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 135 ETKLECEKKELELTQSSIKELSMEFHSEE-EKLELLQGKVRLHENEVESLEQKLDSMRKQQ 194 (707)
Q Consensus 135 e~el~~~~~Ele~~e~~i~~l~~ele~~e-~~l~~le~el~~~~~eL~~~e~el~~~~~ei 194 (707)
+-.+..++++....++++...+..+.++. ..+....++..+.+.++..-..++..+++++
T Consensus 187 KLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~ 247 (861)
T KOG1899|consen 187 KLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQR 247 (861)
T ss_pred HHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Confidence 55555555444444444444333333332 1133333333333333433333433343333
No 180
>PF13166 AAA_13: AAA domain
Probab=95.98 E-value=1.6 Score=52.30 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhh
Q 005229 228 ELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLF 281 (707)
Q Consensus 228 el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~l 281 (707)
++..+++.+..+...+..+..++..++.++.++...+.....-.+.+...+..+
T Consensus 418 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 418 EIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 333333333334444444444444444444444444443333344444444444
No 181
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.97 E-value=3.1 Score=45.13 Aligned_cols=32 Identities=13% Similarity=-0.028 Sum_probs=15.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 127 VKNSLMLCETKLECEKKELELTQSSIKELSME 158 (707)
Q Consensus 127 l~~ele~le~el~~~~~Ele~~e~~i~~l~~e 158 (707)
+++.+.+++.+..++...+..+...++.+..+
T Consensus 302 lqmr~qqleeentelRs~~arlksl~dklaee 333 (502)
T KOG0982|consen 302 LQMRDQQLEEENTELRSLIARLKSLADKLAEE 333 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444444444444444444444444444
No 182
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.93 E-value=0.7 Score=54.93 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005229 75 VELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENE 114 (707)
Q Consensus 75 ~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~ 114 (707)
...++.++..+...++..-.+|.+++++++.++..-+.+.
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La 599 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA 599 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333333
No 183
>PRK10869 recombination and repair protein; Provisional
Probab=95.83 E-value=3.1 Score=48.28 Aligned_cols=10 Identities=10% Similarity=0.434 Sum_probs=5.0
Q ss_pred CchhhHHHhh
Q 005229 394 DPALLVLHAM 403 (707)
Q Consensus 394 dpa~lVLd~~ 403 (707)
+|.-+|||=+
T Consensus 452 ~~~~li~DEp 461 (553)
T PRK10869 452 ETPALIFDEV 461 (553)
T ss_pred CCCEEEEECC
Confidence 4555555543
No 184
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.80 E-value=2.1 Score=49.28 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=24.5
Q ss_pred hhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhh
Q 005229 241 KEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQ 282 (707)
Q Consensus 241 ~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le 282 (707)
.+...+.++++++++.+.+.....+.+....+.+..++..|.
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455556666666666666666666666666655555554
No 185
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.76 E-value=2.9 Score=43.09 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=21.7
Q ss_pred HHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhh
Q 005229 236 IEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSS 279 (707)
Q Consensus 236 le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le 279 (707)
+-....++..+.+++...++.+.+...++..++++++.+..+..
T Consensus 181 l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 181 LLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333444445555555555555555555555555554444333
No 186
>PF13514 AAA_27: AAA domain
Probab=95.72 E-value=9 Score=48.53 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005229 73 DEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQ 107 (707)
Q Consensus 73 ~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~ 107 (707)
.+...++.++..++.++......+...+..+...+
T Consensus 673 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1111)
T PF13514_consen 673 ARREQLEEELQQLEQELEEAEAELQEAQEALEEWQ 707 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 187
>PF13166 AAA_13: AAA domain
Probab=95.72 E-value=3 Score=50.00 Aligned_cols=12 Identities=0% Similarity=-0.014 Sum_probs=5.4
Q ss_pred HHHhhcCCcccc
Q 005229 522 CSTTAEGRSAPS 533 (707)
Q Consensus 522 ~~li~~g~~~~a 533 (707)
-.+|+.|-|.+.
T Consensus 677 ~r~~n~~SH~~~ 688 (712)
T PF13166_consen 677 YRLINDESHSEE 688 (712)
T ss_pred HHHHhhcCCcCc
Confidence 344455544443
No 188
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.69 E-value=1.3 Score=48.99 Aligned_cols=96 Identities=14% Similarity=0.198 Sum_probs=64.4
Q ss_pred hHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHH
Q 005229 224 SKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLK 303 (707)
Q Consensus 224 ~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le 303 (707)
..+.......+.+....+++..+.+|...+..+|..+.+++....-+.+++...+..+..+-+.++.+++++++.+....
T Consensus 209 dtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m 288 (596)
T KOG4360|consen 209 DTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECM 288 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555555555666666666666666777777788877777778888888888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 005229 304 KGLEDRLQDLELKERE 319 (707)
Q Consensus 304 ~~L~~~~~eL~~~e~~ 319 (707)
+.+.+-.++|+.+...
T Consensus 289 ~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 289 QMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHhhccC
Confidence 8888888887776543
No 189
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.68 E-value=3.4 Score=43.45 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e 95 (707)
..+...+..+..+-..+..+......+...|..++..++..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 190
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.42 E-value=3.1 Score=46.82 Aligned_cols=33 Identities=9% Similarity=0.133 Sum_probs=20.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhh
Q 005229 250 LISKGKTIAECSKEVELKKNQLNLIQDKSSLFQ 282 (707)
Q Consensus 250 le~l~~~l~e~~~~le~k~~ele~l~~~le~le 282 (707)
+.....++..++++.+..+..++.+-...+...
T Consensus 337 l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 337 LNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666777777777777776666665543
No 191
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.42 E-value=0.14 Score=54.73 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHH
Q 005229 205 KRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELK 267 (707)
Q Consensus 205 ~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k 267 (707)
+++..++..++..++.+...+..+-...-.....+..++....++++++..++......++.+
T Consensus 70 E~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 70 EKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333344444444444444444444444444444433
No 192
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.38 E-value=0.26 Score=52.78 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=5.9
Q ss_pred HHHHHHHhhh
Q 005229 425 RSCILLLEQL 434 (707)
Q Consensus 425 ~~c~~lle~l 434 (707)
+||-++|-.|
T Consensus 292 ~AlK~lLtnl 301 (314)
T PF04111_consen 292 KALKYLLTNL 301 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4666666555
No 193
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.37 E-value=2.8 Score=47.50 Aligned_cols=28 Identities=7% Similarity=0.024 Sum_probs=15.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHhhHH
Q 005229 5 RVEKIMGLGQKRIGEFNCELELKENELN 32 (707)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~eL~l~e~eL~ 32 (707)
.+..+++..+.++..+..++..++.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666665555443
No 194
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=95.31 E-value=3.7 Score=41.49 Aligned_cols=55 Identities=7% Similarity=0.104 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005229 49 EWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKI 103 (707)
Q Consensus 49 l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei 103 (707)
++...|..++..-..+..+......+-..+-.++...+.++.++...+..++...
T Consensus 105 ll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq 159 (330)
T KOG2991|consen 105 LLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQ 159 (330)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3788888888888888888888777777788888888888888888877776654
No 195
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.30 E-value=1.3 Score=40.40 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 110 IEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 110 i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
++.+...|+..+.++..++.++..++...+.+..||-.+...
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555544444444444333
No 196
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=95.19 E-value=4.8 Score=42.06 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q 005229 208 LNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQT 283 (707)
Q Consensus 208 ~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~ 283 (707)
+.++..-+.+.+.-+..+..+++...+.+..++++--.++..-+.-.+.+-..-.+-......++.++..+..|+.
T Consensus 231 yeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~Lek 306 (391)
T KOG1850|consen 231 YEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEK 306 (391)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555555555554444444443333333333333334444444444333
No 197
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.76 Score=51.99 Aligned_cols=8 Identities=13% Similarity=0.144 Sum_probs=3.1
Q ss_pred CHHHHHHH
Q 005229 442 NAQVRDEA 449 (707)
Q Consensus 442 ~~~v~~~A 449 (707)
++++..+|
T Consensus 611 ~~eelr~~ 618 (652)
T COG2433 611 DSEELRRA 618 (652)
T ss_pred cHHHHHHH
Confidence 33333333
No 198
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=6.7 Score=42.80 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=11.2
Q ss_pred HHHHHHHhhhchhhHHhhhhhhhhHHHHH
Q 005229 233 QQSIEECSKEIPGKKEELISKGKTIAECS 261 (707)
Q Consensus 233 ~~~le~l~~El~~l~~Ele~l~~~l~e~~ 261 (707)
.+.++...+.......++......+.+..
T Consensus 365 ~~~md~~~~~~n~V~~kr~a~~~kie~~~ 393 (446)
T KOG4438|consen 365 KAMMDDNIEKYNVVRQKRNAKVKKIEEKN 393 (446)
T ss_pred HHHHHHHHHHhcccchhhccHHHHHHHHH
Confidence 33333333333333344444333333333
No 199
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.01 E-value=3.8 Score=39.97 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 005229 105 SMQTLIEENE 114 (707)
Q Consensus 105 ~l~~~i~e~~ 114 (707)
.+...|++..
T Consensus 53 ~l~~kIeERn 62 (177)
T PF13870_consen 53 QLNEKIEERN 62 (177)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 200
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.01 E-value=9.3 Score=44.34 Aligned_cols=8 Identities=13% Similarity=-0.193 Sum_probs=3.4
Q ss_pred HHHHhhcC
Q 005229 521 QCSTTAEG 528 (707)
Q Consensus 521 i~~li~~g 528 (707)
+-.++++|
T Consensus 666 lps~~~k~ 673 (739)
T PF07111_consen 666 LPSLLEKE 673 (739)
T ss_pred cCCccccc
Confidence 33444444
No 201
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.66 E-value=1.9 Score=46.89 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 005229 90 EEQEKQLA 97 (707)
Q Consensus 90 ~e~~~el~ 97 (707)
.+|+.+++
T Consensus 194 ~eWklEvE 201 (359)
T PF10498_consen 194 AEWKLEVE 201 (359)
T ss_pred HHHHHHHH
Confidence 33443333
No 202
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.65 Score=52.51 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005229 76 ELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLL 117 (707)
Q Consensus 76 ~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l 117 (707)
....+++..+++.++.+..++..++.++.++++.|+.++.++
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333
No 203
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.54 E-value=10 Score=42.64 Aligned_cols=27 Identities=11% Similarity=0.098 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHhhhHhhHHHHHHH
Q 005229 11 GLGQKRIGEFNCELELKENELNSLSVS 37 (707)
Q Consensus 11 ~~~~~~~~~~~~eL~l~e~eL~~~~~e 37 (707)
.-++.++.++..++...+.+|...+.+
T Consensus 174 ~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 174 LWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555444
No 204
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.49 E-value=5.3 Score=46.11 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=10.2
Q ss_pred HHHHHHHhcChhhHHHhHHHHHHHHH
Q 005229 212 RKYIEELNQDPASKDKELRFVQQSIE 237 (707)
Q Consensus 212 ~~ei~~l~~eie~~~~el~~~~~~le 237 (707)
...+.++...++++..++..+.++++
T Consensus 162 eer~~kl~~~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 162 EERTRKLEEQLEELNAELQRARQREK 187 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444443333
No 205
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.49 E-value=1.7 Score=47.30 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005229 90 EEQEKQLAFKESKISSMQTLIEENEGLLKDKE 121 (707)
Q Consensus 90 ~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e 121 (707)
.+|+..+++...-...+...+......|+.+.
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~ 247 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQ 247 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444444444444444444444443333333
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.34 E-value=2.7 Score=45.94 Aligned_cols=27 Identities=37% Similarity=0.282 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005229 119 DKEKLYDEVKNSLMLCETKLECEKKEL 145 (707)
Q Consensus 119 ~~e~e~~~l~~ele~le~el~~~~~El 145 (707)
..+...+.+...+.++..++....+++
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel 398 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKEL 398 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 207
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=94.29 E-value=8.3 Score=41.93 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 005229 197 YFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQD 276 (707)
Q Consensus 197 l~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~ 276 (707)
+...+...+.++...+..+.....++..++..+..++...+....+...++.+++..+..+....+-+..+..+..++..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Confidence 44555555555566666666666666666666666666666666666666666666677777777777777777666666
Q ss_pred hhhhhhhHHH
Q 005229 277 KSSLFQTRTI 286 (707)
Q Consensus 277 ~le~le~~~~ 286 (707)
.+..+.....
T Consensus 299 ~~~~l~~~~~ 308 (344)
T PF12777_consen 299 QIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6665555433
No 208
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.24 E-value=10 Score=41.43 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005229 75 VELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGL 116 (707)
Q Consensus 75 ~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~ 116 (707)
...+.+++...+.+..+-..++..++..++++...+.+....
T Consensus 154 ~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~ 195 (446)
T KOG4438|consen 154 YQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQ 195 (446)
T ss_pred HHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333344555555555544444444333
No 209
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.21 E-value=5.4 Score=46.58 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=11.5
Q ss_pred cCCCCcHHHHHHHHHHHHH
Q 005229 665 LGTFDTAEAAALAYDEAAL 683 (707)
Q Consensus 665 lG~f~t~e~Aa~ayd~aa~ 683 (707)
+-||.|-.|..--...||+
T Consensus 825 ~stfts~de~~f~~glaal 843 (861)
T PF15254_consen 825 FSTFTSRDEQDFRNGLAAL 843 (861)
T ss_pred ccccccccHHHHHhhHHHh
Confidence 4678777666555454444
No 210
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=94.17 E-value=11 Score=41.62 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 005229 74 EVELREKKVGEAQ 86 (707)
Q Consensus 74 e~~~~~~ei~~le 86 (707)
.+.....++..+.
T Consensus 138 ~l~~~~eQl~~lr 150 (384)
T PF03148_consen 138 TLEQAEEQLRLLR 150 (384)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.13 E-value=3.2 Score=45.39 Aligned_cols=16 Identities=0% Similarity=-0.027 Sum_probs=5.9
Q ss_pred hhhhhhhhHHHHHHHH
Q 005229 249 ELISKGKTIAECSKEV 264 (707)
Q Consensus 249 Ele~l~~~l~e~~~~l 264 (707)
++..+++++..+.=.+
T Consensus 436 ~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 436 KITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHhHheeh
Confidence 3333333333333333
No 212
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.07 E-value=2.7 Score=42.86 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQK 186 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~e 186 (707)
+..+.+++..+..++...+.+
T Consensus 83 i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555
No 213
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.06 E-value=7.5 Score=41.01 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 173 VRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEEL 218 (707)
Q Consensus 173 l~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l 218 (707)
.......+......+......+..+...+...+..+-..-..|.-+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 114 VESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3334444444445555555555555555666666655555566654
No 214
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.03 E-value=0.85 Score=45.00 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=45.0
Q ss_pred hhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHH
Q 005229 223 ASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHF 299 (707)
Q Consensus 223 e~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~ 299 (707)
..++..+..++..+++++++.+.+.++++.++.++++.+.++..++.+...++.....+.+....+...|.+|+...
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 34555555666666666666666666666666666666666666666665655555555554333444444444433
No 215
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.01 E-value=7.7 Score=39.22 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e 95 (707)
+..-|.+++..+..++..+.........++.++..++..+..+...
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777777777777777777777666
No 216
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=93.96 E-value=12 Score=41.35 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=29.9
Q ss_pred hhhhhHHHHHHHHhhhHhhHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHHHHH
Q 005229 12 LGQKRIGEFNCELELKENELNSLSVSLNLK-NKPSSAQEWINKCQAYQKELRLW 64 (707)
Q Consensus 12 ~~~~~~~~~~~eL~l~e~eL~~~~~el~~~-~~~l~~~l~~~~~~~~~~el~~l 64 (707)
....++..++.|++.+..++..++..-... ....+-..+...+..+++.|..+
T Consensus 91 s~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 91 SPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 445666677777777777776665443333 22333333455666666666665
No 217
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.61 E-value=6.7 Score=37.17 Aligned_cols=47 Identities=28% Similarity=0.316 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005229 104 SSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQS 150 (707)
Q Consensus 104 ~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~ 150 (707)
..++..++..+.++...+.....+...+..+...+....+++..+..
T Consensus 76 ~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 76 ERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333444444444433333
No 218
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=93.57 E-value=7 Score=39.48 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005229 85 AQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELT 148 (707)
Q Consensus 85 le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~ 148 (707)
|+.=|.+|..+|++-++-......+|+.....|-.....+..+-.++..++..-..+..+++-+
T Consensus 76 LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I 139 (254)
T KOG2196|consen 76 LEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFI 139 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333333333333333333333333333333
No 219
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=93.55 E-value=7.6 Score=37.63 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=51.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 124 YDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL 203 (707)
Q Consensus 124 ~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~ 203 (707)
.+.+...+...+....-+.++++-....+.....+....-++...++.+-..-..++......++.++.+.-.+...-..
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ 138 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSL 138 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677777777777777666666555444333333333332333344444445555566665555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 005229 204 KKRELNEIRKYIEEL 218 (707)
Q Consensus 204 k~~e~~e~~~ei~~l 218 (707)
.+..+..++.++.+-
T Consensus 139 ae~Ki~~LE~KL~eE 153 (178)
T PF14073_consen 139 AETKIKELEEKLQEE 153 (178)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555443
No 220
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=93.32 E-value=14 Score=40.10 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=24.2
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005229 247 KEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLED 308 (707)
Q Consensus 247 ~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~ 308 (707)
+..++..+..+......+..++.++..++..+..++........+-..++......+..|..
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33344444444444444444444444444444433333333333333333334444444433
No 221
>PLN02939 transferase, transferring glycosyl groups
Probab=93.28 E-value=26 Score=42.95 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFK 99 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~el 99 (707)
+..-|...++.+--++..--...+++..+-.+-+.|+.+|+-++..|.+-
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (977)
T PLN02939 133 LVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSET 182 (977)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence 33444444444444444444444444444444444554444444444443
No 222
>PF14992 TMCO5: TMCO5 family
Probab=93.23 E-value=12 Score=38.97 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=29.6
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHhhhcchhhHHHhhh
Q 005229 471 LGFLHLLAAYRLAPAFDREELESLLCIVAQHRQTPKLRRTL 511 (707)
Q Consensus 471 ~~fl~~l~~fgi~~~f~~~el~~l~~~~~~~~~~~~l~~~l 511 (707)
.++|-.+..| +.++|.|-+..++..+-+|+..-+|.+-|
T Consensus 229 ~~LL~y~~f~--~~fInpdll~~~LP~~L~R~tlw~LR~~l 267 (280)
T PF14992_consen 229 TRLLGYLLFY--IQFINPDLLEDVLPKMLSRRTLWRLREFL 267 (280)
T ss_pred HHHHHHHHHH--HhhcCcHHHHHHhHHhcchhHHHHHHHHH
Confidence 3444455556 67789999999999999999998876554
No 223
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.22 E-value=15 Score=44.05 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHH
Q 005229 164 EKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQ 234 (707)
Q Consensus 164 ~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~ 234 (707)
..+..+..++..++++|..++.....+-.+........+..+...-++..++..++.+...+.+++.....
T Consensus 467 ~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~ 537 (913)
T KOG0244|consen 467 QKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR 537 (913)
T ss_pred HHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH
Confidence 33455777777777777777777777666666666777777777777777777777777777777777655
No 224
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=93.20 E-value=11 Score=44.49 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=14.3
Q ss_pred hhchhhHHhhhhhhhhHHHHHHH
Q 005229 241 KEIPGKKEELISKGKTIAECSKE 263 (707)
Q Consensus 241 ~El~~l~~Ele~l~~~l~e~~~~ 263 (707)
.+...+..++..++..|...++-
T Consensus 300 ~~r~kL~N~i~eLkGnIRV~CRv 322 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIRVFCRV 322 (670)
T ss_pred HHHHHHHHHHHHhhcCceEEEEe
Confidence 44555666777777777665543
No 225
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=93.16 E-value=16 Score=40.13 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=14.4
Q ss_pred hhcCCchhhHHHhhhCCCC
Q 005229 390 KSARDPALLVLHAMSGFYP 408 (707)
Q Consensus 390 ~~a~dpa~lVLd~~~~~~~ 408 (707)
++.+|-+.+-|..+-.-||
T Consensus 507 ~s~VD~~s~~l~~~lr~~p 525 (554)
T KOG4677|consen 507 RSKVDKGSAELEKILRLLP 525 (554)
T ss_pred HhhcchhhHHHHHHHhcCc
Confidence 4557888888888887776
No 226
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=25 Score=41.97 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=13.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhh
Q 005229 249 ELISKGKTIAECSKEVELKKNQLNLIQDKSSLF 281 (707)
Q Consensus 249 Ele~l~~~l~e~~~~le~k~~ele~l~~~le~l 281 (707)
|+..+.+.+.....+++....++-.+..++..+
T Consensus 775 E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~l 807 (984)
T COG4717 775 ELALLEEAIDALDEEVEELHAQVAALSRQIAQL 807 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444
No 227
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.94 E-value=23 Score=41.46 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=22.4
Q ss_pred HHHHHHHHhhh-hccCCCCCHHHHHHHHHHHHHHHHhhh
Q 005229 424 RRSCILLLEQL-STVEPEINAQVRDEAMKVAGEWKKKMR 461 (707)
Q Consensus 424 r~~c~~lle~l-~~~~~~~~~~v~~~A~~~A~~Wk~~~~ 461 (707)
|.+.++|.+.= ++.-..--|.+.+.++.-...|-....
T Consensus 407 Rg~h~lLkreekar~~vsKlP~~~~~L~~k~~~wE~e~~ 445 (660)
T KOG4302|consen 407 RGAHLLLKREEKARKLVSKLPKMVEALTAKVTAWEEEKG 445 (660)
T ss_pred ccchhHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcC
Confidence 66776776652 222111156666667777888877654
No 228
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=92.91 E-value=7.2 Score=46.12 Aligned_cols=13 Identities=23% Similarity=-0.105 Sum_probs=7.0
Q ss_pred HHHHhhcCCcccc
Q 005229 521 QCSTTAEGRSAPS 533 (707)
Q Consensus 521 i~~li~~g~~~~a 533 (707)
|..|.+.|..--|
T Consensus 494 v~~ll~~g~~nRs 506 (670)
T KOG0239|consen 494 VDILLEIGLSNRS 506 (670)
T ss_pred HHHHHHHhhcccc
Confidence 5555565555444
No 229
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.87 E-value=8.7 Score=36.38 Aligned_cols=25 Identities=16% Similarity=0.136 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 005229 119 DKEKLYDEVKNSLMLCETKLECEKK 143 (707)
Q Consensus 119 ~~e~e~~~l~~ele~le~el~~~~~ 143 (707)
.++..+......+.....++..+..
T Consensus 98 ~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 98 QLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 230
>PRK12704 phosphodiesterase; Provisional
Probab=92.86 E-value=21 Score=41.15 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=28.0
Q ss_pred cceee--eEc-CCCceEEEEecCCCCcccccCCCCcHHHHHHHHHHHHHHccCCCCCCCCCCcc
Q 005229 638 HFRGV--RQR-PWGKWAAEIRDPKKAARIWLGTFDTAEAAALAYDEAALRFKGRKAKLNFPERV 698 (707)
Q Consensus 638 ~~rGV--~~~-~~g~w~a~i~~~~~~~~~~lG~f~t~e~Aa~ayd~aa~~~~g~~~~~nfp~~~ 698 (707)
.|.|| .+- ..|| .-+|.+... .| ++.+....|.|.|..-= ..+.||-.+
T Consensus 454 ~~~gv~~~yaiqaGr-eirv~v~~~--~v-----~d~~~~~la~~i~~~ie----~~~~ypg~i 505 (520)
T PRK12704 454 SFEGVEKAYAIQAGR-EIRVIVKPD--KV-----DDLQAVRLARDIAKKIE----EELQYPGQI 505 (520)
T ss_pred hCCcHHHHHHHhcCc-eEEEEeCCC--cC-----ChHHHHHHHHHHHHHHH----HhCcCCCce
Confidence 59999 333 4577 344444433 33 67777778888654322 456666443
No 231
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.75 E-value=22 Score=40.80 Aligned_cols=49 Identities=24% Similarity=0.357 Sum_probs=27.8
Q ss_pred cceee--eEc-CCCceEEEEecCCCCcccccCCCCcHHHHHHHHHHHHHHccCCCCCCCCCCcc
Q 005229 638 HFRGV--RQR-PWGKWAAEIRDPKKAARIWLGTFDTAEAAALAYDEAALRFKGRKAKLNFPERV 698 (707)
Q Consensus 638 ~~rGV--~~~-~~g~w~a~i~~~~~~~~~~lG~f~t~e~Aa~ayd~aa~~~~g~~~~~nfp~~~ 698 (707)
.|.|| .+- ..|| .-+|.+... .| ++.+.+..|+|.|..-= ..+.||-.+
T Consensus 448 ~~~gv~~~~aiqaGr-eirv~v~~~--~v-----~d~~~~~la~~i~~~ie----~~~~ypg~i 499 (514)
T TIGR03319 448 SFEGVEKSYAIQAGR-EIRVMVKPE--KI-----SDDQAVVLARDIAKKIE----EELEYPGQI 499 (514)
T ss_pred hCCCchhhhhhhcCc-EEEEEecCC--cC-----ChHHHHHHHHHHHHHHH----HhCcCCCce
Confidence 48899 333 4466 444444433 33 67777788888654322 455666443
No 232
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=92.69 E-value=14 Score=38.20 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHH
Q 005229 131 LMLCETKLECEKKELELTQSSIKELSMEFHS-EEEKLELLQGKVRLHENEVESL 183 (707)
Q Consensus 131 le~le~el~~~~~Ele~~e~~i~~l~~ele~-~e~~l~~le~el~~~~~eL~~~ 183 (707)
.+.+...++.+...+..+...+..-...+.. ++.....+..++..+...++..
T Consensus 87 ~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~E 140 (247)
T PF06705_consen 87 QEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENE 140 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554444443333222 2223333444444444444433
No 233
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=92.41 E-value=7.2 Score=40.51 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 74 EVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIK 153 (707)
Q Consensus 74 e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~ 153 (707)
-+.....++...+..+..+..+...++.+|+..+.+++..++.+.++++..=-...|-+.++.++..+-...-..-..+.
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~ 249 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLD 249 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444455555555555555555566666666666666666666666665555556666666666666555555544444
Q ss_pred HHHHhh
Q 005229 154 ELSMEF 159 (707)
Q Consensus 154 ~l~~el 159 (707)
-++.++
T Consensus 250 yLe~ql 255 (267)
T PF10234_consen 250 YLEHQL 255 (267)
T ss_pred HHHHHH
Confidence 444443
No 234
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.20 E-value=15 Score=37.33 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 005229 439 PEINAQVRDEAMKVAGEWKKKM 460 (707)
Q Consensus 439 ~~~~~~v~~~A~~~A~~Wk~~~ 460 (707)
.+++|++|-.|.-+-.+.-.+.
T Consensus 239 ~pltp~aRisalnivgDllRkv 260 (333)
T KOG1853|consen 239 VPLTPDARISALNIVGDLLRKV 260 (333)
T ss_pred CCCCchhhHHHHHHHHHHHHHh
Confidence 3456666666665555544444
No 235
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=92.16 E-value=11 Score=36.02 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 62 RLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 62 ~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e 95 (707)
..+++...+...=.+....+...+.+++.+.+.+
T Consensus 9 ~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~ 42 (159)
T PF05384_consen 9 DTIESSKEQIFEIAEQARQEYERLRKELEEVKEE 42 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 236
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=91.88 E-value=13 Score=36.08 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=15.2
Q ss_pred HhhhhhhHHHHHHHHhhhHhhHHHHHHHhh
Q 005229 10 MGLGQKRIGEFNCELELKENELNSLSVSLN 39 (707)
Q Consensus 10 ~~~~~~~~~~~~~eL~l~e~eL~~~~~el~ 39 (707)
+..+|++|..+.-|=...+..+..+..+..
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~ 35 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETS 35 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344555555555554555555555544443
No 237
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=91.67 E-value=25 Score=38.90 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=51.0
Q ss_pred HHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhh------hHHH----HHHHhHHH
Q 005229 225 KDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQ------TRTI----VYLKELKE 294 (707)
Q Consensus 225 ~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le------~~~~----~~~~~~~e 294 (707)
+...+...+.....++.++.....++...+..|..+..-+..+..-+...+-.++... -|.+ .+..+..+
T Consensus 249 l~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~ 328 (384)
T PF03148_consen 249 LRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKE 328 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHH
Confidence 3444444445555555555555566666666666666666666666555555555422 2211 22334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005229 295 KETHFDSLKKGLEDRLQDLELKEREFEKRVKE 326 (707)
Q Consensus 295 l~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E 326 (707)
+...+..|...|..-...+..+...-.....+
T Consensus 329 l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~d 360 (384)
T PF03148_consen 329 LRESIEALQEKLDEAEASLQKLERTRLRLEED 360 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444444444444433333
No 238
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=91.66 E-value=6.4 Score=40.51 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHhhhHHH
Q 005229 256 TIAECSKEVELKKNQLNLIQ 275 (707)
Q Consensus 256 ~l~e~~~~le~k~~ele~l~ 275 (707)
.|+...++|+.+-.-++..+
T Consensus 153 DINiQN~KLEsLLqsMElAq 172 (305)
T PF15290_consen 153 DINIQNKKLESLLQSMELAQ 172 (305)
T ss_pred hhhhhHhHHHHHHHHHHHHH
Confidence 33444444444444444433
No 239
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.52 E-value=18 Score=36.87 Aligned_cols=19 Identities=37% Similarity=0.340 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005229 140 CEKKELELTQSSIKELSME 158 (707)
Q Consensus 140 ~~~~Ele~~e~~i~~l~~e 158 (707)
.++.+++....+|++++.+
T Consensus 181 rlK~ele~tk~Klee~Qne 199 (330)
T KOG2991|consen 181 RLKGELEQTKDKLEEAQNE 199 (330)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444
No 240
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.97 E-value=39 Score=39.86 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=5.5
Q ss_pred hhHHHHhhhhhhhH
Q 005229 271 LNLIQDKSSLFQTR 284 (707)
Q Consensus 271 le~l~~~le~le~~ 284 (707)
+.++......|+..
T Consensus 538 i~RL~eLtR~LQ~S 551 (861)
T PF15254_consen 538 IERLRELTRTLQNS 551 (861)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333344443
No 241
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=90.86 E-value=30 Score=38.32 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECY 72 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~ 72 (707)
...++..++.|+.++.+++....
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~~ 114 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKRK 114 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777777777666666553
No 242
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=90.72 E-value=40 Score=39.86 Aligned_cols=10 Identities=10% Similarity=0.504 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 005229 298 HFDSLKKGLE 307 (707)
Q Consensus 298 ~~~~le~~L~ 307 (707)
.++.|+++|.
T Consensus 696 kieal~~qik 705 (762)
T PLN03229 696 KIEALEQQIK 705 (762)
T ss_pred HHHHHHHHHH
Confidence 3455555554
No 243
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=90.65 E-value=40 Score=39.45 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005229 66 NLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEEN 113 (707)
Q Consensus 66 ~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~ 113 (707)
..+..+..+...+...+...+..-+....++...+..+..+.+.|-.+
T Consensus 836 ~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql 883 (1480)
T COG3096 836 AEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQL 883 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334444555555555555555555555566666666666666665544
No 244
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.59 E-value=29 Score=37.76 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 005229 167 ELLQGKVRLHENEVESLEQKLDS-MRKQQKKYFDDV 201 (707)
Q Consensus 167 ~~le~el~~~~~eL~~~e~el~~-~~~ei~el~~el 201 (707)
+.++.+.-++++.++..+..|.. +=++++.+..+.
T Consensus 182 eQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ek 217 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEK 217 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433322 333344443333
No 245
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=90.47 E-value=22 Score=36.06 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 51 INKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 51 ~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e 95 (707)
..-+.+++..+......+.........++.++..++..+..+...
T Consensus 30 ~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 30 RLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666667777777777777777777777777777777766
No 246
>COG5283 Phage-related tail protein [Function unknown]
Probab=90.46 E-value=54 Score=40.69 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=113.4
Q ss_pred HHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 9 IMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRS 88 (707)
Q Consensus 9 ~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~ 88 (707)
.++.+...+....+.-+..|.++.+-+.-+..+... ++.+.+-+...+.-+.++..+......-+...++.
T Consensus 23 ~in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k---------~~~l~eameK~k~~~~~~kqe~~evn~at~a~~ka 93 (1213)
T COG5283 23 NINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGK---------YEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKA 93 (1213)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766665555544444 48888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005229 89 IEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEE 163 (707)
Q Consensus 89 i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e 163 (707)
..++..+....+..+..+...+......+..-+.+++.++-.+..+..-+..+....+.....+......+..+.
T Consensus 94 y~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~ 168 (1213)
T COG5283 94 YQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLR 168 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHh
Confidence 999999999999999988888888888888888888888888877777666666666666666666666655554
No 247
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.24 E-value=14 Score=39.28 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 110 IEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 110 i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
+.++...+...+..|........++..+...+.=+++.++..
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~ 120 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDK 120 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555554444433
No 248
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=90.23 E-value=48 Score=39.70 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAF 98 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~e 98 (707)
...+.....+.+.++.+....+.++.+.+..+..+.++..+.++
T Consensus 553 ~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~ 596 (984)
T COG4717 553 SRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEE 596 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33445555666666666666666666666666666666666443
No 249
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.19 E-value=31 Score=37.52 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=10.4
Q ss_pred HHHHHHhcChhhHHHhHHHHHH
Q 005229 213 KYIEELNQDPASKDKELRFVQQ 234 (707)
Q Consensus 213 ~ei~~l~~eie~~~~el~~~~~ 234 (707)
.-|..+..++++++..+...++
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544443
No 250
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.19 E-value=9.4 Score=43.02 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=5.8
Q ss_pred HHHHHHHhhh
Q 005229 4 WRVEKIMGLG 13 (707)
Q Consensus 4 ~~~~~~~~~~ 13 (707)
|.|+.++...
T Consensus 328 w~LEaQL~kI 337 (518)
T PF10212_consen 328 WMLEAQLAKI 337 (518)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 251
>PF15294 Leu_zip: Leucine zipper
Probab=90.16 E-value=15 Score=38.26 Aligned_cols=139 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHH
Q 005229 76 ELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKN---------SLMLCETKLECEKKELE 146 (707)
Q Consensus 76 ~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~---------ele~le~el~~~~~Ele 146 (707)
..+.++|..++.+-+.++..+..++..-..+-.+-..+...|+.++........ ++..++..+..++.+++
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~e 207 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELE 207 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 147 LTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQ---QKKYFDDVELKKRELNEIRKYIEE 217 (707)
Q Consensus 147 ~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~e---i~el~~ele~k~~e~~e~~~ei~~ 217 (707)
.. +.........++..+.....++..++..|...++++...=.+ +..+..-+..+..++.++...+.+
T Consensus 208 k~---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl~k 278 (278)
T PF15294_consen 208 KA---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRLAK 278 (278)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHhcC
No 252
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.91 E-value=26 Score=36.19 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=3.3
Q ss_pred hhHHHHhhc
Q 005229 384 KVFDTIKSA 392 (707)
Q Consensus 384 e~~~al~~a 392 (707)
++..|++.|
T Consensus 224 ~i~~ai~ia 232 (251)
T PF11932_consen 224 EIRKAIRIA 232 (251)
T ss_pred HHHHHHHHH
Confidence 333333333
No 253
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=38 Score=37.89 Aligned_cols=12 Identities=8% Similarity=0.061 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 005229 74 EVELREKKVGEA 85 (707)
Q Consensus 74 e~~~~~~ei~~l 85 (707)
+++.+..-+..+
T Consensus 128 ~~d~l~~~~~fl 139 (613)
T KOG0992|consen 128 EIDKLKNLLSFL 139 (613)
T ss_pred hHHHHHHHHHHH
Confidence 344444444444
No 254
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=89.71 E-value=26 Score=35.91 Aligned_cols=43 Identities=9% Similarity=0.150 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 171 GKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRK 213 (707)
Q Consensus 171 ~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ 213 (707)
+-|.....++.+.+.+......+...........+..+..+++
T Consensus 121 EmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek 163 (239)
T PF05276_consen 121 EMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEK 163 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333333333333
No 255
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=89.69 E-value=16 Score=37.80 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 117 LKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIK 153 (707)
Q Consensus 117 l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~ 153 (707)
++.+.+.-..+.++++.+-.+...+..++..++.+-+
T Consensus 261 LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~ 297 (384)
T KOG0972|consen 261 LEKIASREKSLNNQLASLMQKFRRATDTLSELREKYK 297 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444443333
No 256
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=89.68 E-value=22 Score=35.04 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005229 119 DKEKLYDEVKNSLMLCETKLECEKKELELTQS 150 (707)
Q Consensus 119 ~~e~e~~~l~~ele~le~el~~~~~Ele~~e~ 150 (707)
.++..++.++.++...+.-+.+....+...+.
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~ 95 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQA 95 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 257
>PRK10698 phage shock protein PspA; Provisional
Probab=89.42 E-value=26 Score=35.54 Aligned_cols=46 Identities=11% Similarity=0.043 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e 95 (707)
+.--+.+++..+..+...+.......+.++.++..++..+..|...
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777777777777777777777777766
No 258
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.41 E-value=26 Score=35.39 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005229 76 ELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENE 114 (707)
Q Consensus 76 ~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~ 114 (707)
..++.-|.+++..+.+.+..+......-..++..+.+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~ 64 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAE 64 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433333333333333333
No 259
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.34 E-value=18 Score=37.38 Aligned_cols=47 Identities=28% Similarity=0.240 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHH
Q 005229 192 KQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEE 238 (707)
Q Consensus 192 ~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~ 238 (707)
+||+.|+.-++..+..+.+..+-|++.=-+|...+..++.+-+.++-
T Consensus 124 kEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMEl 170 (305)
T PF15290_consen 124 KEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMEL 170 (305)
T ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHH
Confidence 44444444444445555555555555555555555555555544443
No 260
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=89.25 E-value=25 Score=36.58 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHh-------hhchhhHHhhhhhhhhHHHHHHHHHHHHHhh
Q 005229 199 DDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECS-------KEIPGKKEELISKGKTIAECSKEVELKKNQL 271 (707)
Q Consensus 199 ~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~-------~El~~l~~Ele~l~~~l~e~~~~le~k~~el 271 (707)
..++..++.+.++..+-..++.+|++...+++..++++..++ .|++.++.|+..+=..+-..-+.++-++.++
T Consensus 176 ~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~ql 255 (267)
T PF10234_consen 176 QQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQL 255 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333444444444444444444455555555555555554 4444555555554444555555555555544
Q ss_pred hHH
Q 005229 272 NLI 274 (707)
Q Consensus 272 e~l 274 (707)
+..
T Consensus 256 e~~ 258 (267)
T PF10234_consen 256 EEY 258 (267)
T ss_pred HHH
Confidence 433
No 261
>PLN02939 transferase, transferring glycosyl groups
Probab=89.11 E-value=65 Score=39.65 Aligned_cols=18 Identities=6% Similarity=-0.009 Sum_probs=10.4
Q ss_pred ccccccccccCCCCCCCC
Q 005229 531 APSMLVGTSAPLNQSVSS 548 (707)
Q Consensus 531 ~~a~~~~~~~~l~~~~~p 548 (707)
+..+.-.|.+.-...|+|
T Consensus 640 ~ktVfTIHNl~yQG~f~~ 657 (977)
T PLN02939 640 ARICFTCHNFEYQGTAPA 657 (977)
T ss_pred CcEEEEeCCCcCCCcCCH
Confidence 455666666665566643
No 262
>PF14992 TMCO5: TMCO5 family
Probab=88.83 E-value=20 Score=37.41 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 61 LRLWKNLIEECYDEVELREKKVGEAQRSIEEQE 93 (707)
Q Consensus 61 l~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~ 93 (707)
...+.+.-..+..+|...+..|..|+++|....
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~ 45 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREITKMD 45 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444444455555555555555554444
No 263
>PRK00106 hypothetical protein; Provisional
Probab=88.73 E-value=51 Score=37.96 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=28.2
Q ss_pred cceeee--Ec-CCCceEEEEecCCCCcccccCCCCcHHHHHHHHHHHHHHccCCCCCCCCCCcc
Q 005229 638 HFRGVR--QR-PWGKWAAEIRDPKKAARIWLGTFDTAEAAALAYDEAALRFKGRKAKLNFPERV 698 (707)
Q Consensus 638 ~~rGV~--~~-~~g~w~a~i~~~~~~~~~~lG~f~t~e~Aa~ayd~aa~~~~g~~~~~nfp~~~ 698 (707)
.|.||- +- ..|| .-+|.+... .| ++.+..-.|+|.|..-= ..+.||-.+
T Consensus 469 ~~~gV~~~yaiqaGR-EiRviV~p~--~v-----~D~~~~~la~~ia~~Ie----~~~~yPG~i 520 (535)
T PRK00106 469 SFDGVQNSFALQAGR-EIRIMVQPE--KI-----SDDQVTILAHKVREKIE----NNLDYPGNI 520 (535)
T ss_pred cCCcHHHHHHHhcCC-eEEEEecCC--cC-----ChHHHHHHHHHHHHHHH----HhCcCCCce
Confidence 599992 33 4577 444444333 33 67777778888654322 456666543
No 264
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=88.44 E-value=22 Score=33.26 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 183 LEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI 215 (707)
Q Consensus 183 ~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei 215 (707)
.+..|+..+.+++-+......+++++.+....+
T Consensus 89 vRkkID~vNreLkpl~~~cqKKEkEykealea~ 121 (159)
T PF04949_consen 89 VRKKIDSVNRELKPLGQSCQKKEKEYKEALEAF 121 (159)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 265
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=88.40 E-value=61 Score=38.38 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL-KKRELNEIRKYIEELNQDPASKDKELRFVQQSIE 237 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~-k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le 237 (707)
..+++.+......+++++.+++..+..+++++..+|-+ ++.++.+.+-...+...--..++-++..++.+.+
T Consensus 997 ~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemd 1069 (1424)
T KOG4572|consen 997 EKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMD 1069 (1424)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhh
Confidence 44555556666666777777777766666666666532 3334444444433333333333444444443333
No 266
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=88.21 E-value=53 Score=37.50 Aligned_cols=33 Identities=6% Similarity=0.298 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005229 74 EVELREKKVGEAQRSIEEQEKQLAFKESKISSM 106 (707)
Q Consensus 74 e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l 106 (707)
....+.+++..|..+..++..++....+....+
T Consensus 415 ~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~l 447 (607)
T KOG0240|consen 415 EEDILTERIESLYQQLDQKDDQINKQSQLMEKL 447 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333333
No 267
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=87.80 E-value=24 Score=32.99 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhh
Q 005229 205 KRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELI 251 (707)
Q Consensus 205 ~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele 251 (707)
++++..+...|...++++.-+.......++++....+.+.++.++..
T Consensus 83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~ 129 (159)
T PF04949_consen 83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKA 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443333333333
No 268
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.76 E-value=54 Score=37.10 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005229 79 EKKVGEAQRSIEEQEKQLAFKESKISSM 106 (707)
Q Consensus 79 ~~ei~~le~~i~e~~~el~ele~ei~~l 106 (707)
+..+..|...++..-++|...+++++.+
T Consensus 587 qrH~~~l~~~k~~QlQ~l~~~~eer~~i 614 (741)
T KOG4460|consen 587 QRHVKLLCDQKKKQLQDLSYCREERKSL 614 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443333444433333333
No 269
>PRK12704 phosphodiesterase; Provisional
Probab=87.62 E-value=60 Score=37.44 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.8
Q ss_pred hHHHhhhCCc
Q 005229 505 PKLRRTLGFA 514 (707)
Q Consensus 505 ~~l~~~lgl~ 514 (707)
..|+..+|+.
T Consensus 348 ~~lA~~lgld 357 (520)
T PRK12704 348 GLMAAELGLD 357 (520)
T ss_pred HHHHHHhCcC
Confidence 3444555553
No 270
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.45 E-value=17 Score=36.00 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 189 SMRKQQKKYFDDVELKKRELNEIRKY 214 (707)
Q Consensus 189 ~~~~ei~el~~ele~k~~e~~e~~~e 214 (707)
..+.+|..++.....++.++...+.+
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334433333333
No 271
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=87.32 E-value=57 Score=36.87 Aligned_cols=19 Identities=0% Similarity=0.169 Sum_probs=13.0
Q ss_pred hhccchhhhhhhHHHHhhc
Q 005229 374 HLQKHDSIFCKVFDTIKSA 392 (707)
Q Consensus 374 ~~~~~~~~~~e~~~al~~a 392 (707)
.|.....+|-+-+++|+..
T Consensus 512 kfntEtk~R~ee~a~Lre~ 530 (531)
T PF15450_consen 512 KFNTETKLRTEEVAALRES 530 (531)
T ss_pred ccchHHHHHHHHHHHHHhc
Confidence 4445666788888888754
No 272
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.21 E-value=58 Score=36.86 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=7.0
Q ss_pred hhhhHHHHHHHHHHHHHhh
Q 005229 253 KGKTIAECSKEVELKKNQL 271 (707)
Q Consensus 253 l~~~l~e~~~~le~k~~el 271 (707)
++.-+.++...+++.-.++
T Consensus 714 iqsiL~~L~~~i~~~~k~V 732 (741)
T KOG4460|consen 714 IQSILKELGEHIREMVKQV 732 (741)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 273
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=87.14 E-value=4.4 Score=33.55 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 005229 190 MRKQQKKYFDDVELKKRELNEIRKYIEELNQDP 222 (707)
Q Consensus 190 ~~~ei~el~~ele~k~~e~~e~~~ei~~l~~ei 222 (707)
.+..|..+..+-+.+...-......|+++...+
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~ 42 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKI 42 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 274
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=86.94 E-value=27 Score=33.45 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 59 KELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ--LAFKESKISSMQTLIEENEGLLKDKEKLYD 125 (707)
Q Consensus 59 ~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e--l~ele~ei~~l~~~i~e~~~~l~~~e~e~~ 125 (707)
.++..+...|..++.++..+...++..+.+|.++.+. +.+++++|.++++.....+..|+.+..-..
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~ 147 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTN 147 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677777777788888888888888888888888777 677777777777777777766666655444
No 275
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.93 E-value=16 Score=38.84 Aligned_cols=85 Identities=9% Similarity=0.076 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005229 53 KCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLM 132 (707)
Q Consensus 53 ~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele 132 (707)
-+..++..+.+++++.....--...+.++-..+.=++.-++..|++++..+..+++.+.+....++.....+..++.++.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777776666666666666666666666666666666666666555444444333333333333333
Q ss_pred HHHHH
Q 005229 133 LCETK 137 (707)
Q Consensus 133 ~le~e 137 (707)
.+..+
T Consensus 158 ~Lre~ 162 (302)
T PF09738_consen 158 ELREQ 162 (302)
T ss_pred HHHHH
Confidence 33333
No 276
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.84 E-value=12 Score=30.03 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=16.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 122 KLYDEVKNSLMLCETKLECEKKELELTQSSIKELSME 158 (707)
Q Consensus 122 ~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~e 158 (707)
+.+.-++++++.++.+...+..+....+...+.+..+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 3334455555555555444444444444444444333
No 277
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=86.72 E-value=45 Score=35.12 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=7.7
Q ss_pred HHhhhhhhhhHHHHHHHHH
Q 005229 247 KEELISKGKTIAECSKEVE 265 (707)
Q Consensus 247 ~~Ele~l~~~l~e~~~~le 265 (707)
..|++.+.+.+..++++--
T Consensus 249 K~E~ekmtKk~kklEKE~l 267 (391)
T KOG1850|consen 249 KQEMEKMTKKIKKLEKETL 267 (391)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 278
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=86.41 E-value=4 Score=47.55 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=27.6
Q ss_pred eEcCCCceEEEEecCCCCcccccCCCCcHHHHHHHHHHHHHHcc
Q 005229 643 RQRPWGKWAAEIRDPKKAARIWLGTFDTAEAAALAYDEAALRFK 686 (707)
Q Consensus 643 ~~~~~g~w~a~i~~~~~~~~~~lG~f~t~e~Aa~ayd~aa~~~~ 686 (707)
++-+|++-+.+ .-.-.+.|+|+-..--+--..+++.+.+|-
T Consensus 627 rr~nW~kI~p~---d~s~~cFWvkv~Edk~en~dlfakL~~~Fa 667 (1102)
T KOG1924|consen 627 RRFNWSKIVPR---DLSENCFWVKVNEDKLENDDLFAKLALKFA 667 (1102)
T ss_pred ccCCccccCcc---ccCccceeeecchhhccchHHHHHHHHHhh
Confidence 34466663322 112458999998887777788888888874
No 279
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.26 E-value=27 Score=34.52 Aligned_cols=7 Identities=0% Similarity=0.078 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 005229 131 LMLCETK 137 (707)
Q Consensus 131 le~le~e 137 (707)
+..++..
T Consensus 161 i~~lks~ 167 (190)
T PF05266_consen 161 ISRLKSE 167 (190)
T ss_pred HHHHHHH
Confidence 3333333
No 280
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=86.23 E-value=2.3 Score=46.74 Aligned_cols=9 Identities=11% Similarity=0.545 Sum_probs=3.7
Q ss_pred CCCCHHHHH
Q 005229 439 PEINAQVRD 447 (707)
Q Consensus 439 ~~~~~~v~~ 447 (707)
|.+|+++.+
T Consensus 286 ~DlS~~~l~ 294 (370)
T PF02994_consen 286 PDLSPETLQ 294 (370)
T ss_dssp CTSTHHHHH
T ss_pred CCCCHHHHH
Confidence 344444433
No 281
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=85.96 E-value=45 Score=34.30 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005229 71 CYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELEL 147 (707)
Q Consensus 71 ~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~ 147 (707)
+..-|+.+..++......++....+..++..+|+..+.+++...+.++.++.-.=....+-+..+.+++.+-...-.
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l 186 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFL 186 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666666666666666666666665555555555555555554444433
No 282
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.71 E-value=30 Score=38.72 Aligned_cols=59 Identities=8% Similarity=0.124 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEEN 113 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~ 113 (707)
+++.+++.--....+.....++.+..++.+|++.--..-..|++.+.+..++.++|-.+
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv 395 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRV 395 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444455555555555555555444444444555555555555555444
No 283
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.70 E-value=15 Score=30.59 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=9.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 005229 124 YDEVKNSLMLCETKLECEKKELE 146 (707)
Q Consensus 124 ~~~l~~ele~le~el~~~~~Ele 146 (707)
+.-++++++.++.+-..+..+..
T Consensus 20 I~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333
No 284
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=85.45 E-value=71 Score=36.15 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhHHH-HHHHHHHHHHHHHHHHHHHH
Q 005229 76 ELREKKVGEAQRSIEEQEKQ----LAFKESKISS-MQTLIEENEGLLKDKEKLYD 125 (707)
Q Consensus 76 ~~~~~ei~~le~~i~e~~~e----l~ele~ei~~-l~~~i~e~~~~l~~~e~e~~ 125 (707)
.....++..+..++..+..+ +...+.++.. +++.+-.++..++..+...-
T Consensus 163 ~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl 217 (531)
T PF15450_consen 163 QKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRL 217 (531)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666655 2233333332 66666666666666655443
No 285
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.08 E-value=80 Score=36.44 Aligned_cols=67 Identities=7% Similarity=0.105 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHh---hhchhhHHhhhhhhhhHHHHHHHHHHH
Q 005229 201 VELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECS---KEIPGKKEELISKGKTIAECSKEVELK 267 (707)
Q Consensus 201 le~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~---~El~~l~~Ele~l~~~l~e~~~~le~k 267 (707)
++..+.++..+..-..+....++.+-.-.+.+..++..+. .....+++++..+..++......|...
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~ 368 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAI 368 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443332 223334444444444444444444443
No 286
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=84.95 E-value=23 Score=31.69 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 70 ECYDEVELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 70 e~~~e~~~~~~ei~~le~~i~e~~~e 95 (707)
.++.++..+..++..++.++.+...-
T Consensus 14 ~~q~~~~~l~~q~~~le~~~~E~~~v 39 (110)
T TIGR02338 14 QLQQQLQAVATQKQQVEAQLKEAEKA 39 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433
No 287
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=84.92 E-value=76 Score=36.05 Aligned_cols=31 Identities=10% Similarity=0.290 Sum_probs=18.5
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHHHHhhhHHH
Q 005229 245 GKKEELISKGKTIAECSKEVELKKNQLNLIQ 275 (707)
Q Consensus 245 ~l~~Ele~l~~~l~e~~~~le~k~~ele~l~ 275 (707)
+++.++..+-+++.....+|.....+++.++
T Consensus 484 NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 484 NYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666555544
No 288
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.91 E-value=35 Score=41.10 Aligned_cols=24 Identities=4% Similarity=-0.082 Sum_probs=17.0
Q ss_pred hcccCcHHHHHHHHHHhhhCCCCC
Q 005229 462 VAVENSLEVLGFLHLLAAYRLAPA 485 (707)
Q Consensus 462 ~~~~~~l~a~~fl~~l~~fgi~~~ 485 (707)
.+.|++.-+..|-..++.-|-..-
T Consensus 541 ~g~GKTtva~nLA~~la~~G~rVL 564 (726)
T PRK09841 541 PDSGKTFVSSTLAAVIAQSDQKVL 564 (726)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEE
Confidence 355677888888888888775443
No 289
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=84.50 E-value=50 Score=33.62 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 129 NSLMLCETKLECEKKELELTQSSIKELSME 158 (707)
Q Consensus 129 ~ele~le~el~~~~~Ele~~e~~i~~l~~e 158 (707)
.....++.++.......+.+.+-|.++++-
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555444
No 290
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.49 E-value=36 Score=41.06 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005229 77 LREKKVGEAQRSIEEQEKQLAFKESKISSMQT 108 (707)
Q Consensus 77 ~~~~ei~~le~~i~e~~~el~ele~ei~~l~~ 108 (707)
...+-+..|+.++.+++.++...+..++..+.
T Consensus 264 ~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 264 QDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555544443
No 291
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=84.35 E-value=32 Score=31.23 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005229 131 LMLCETKLECEKKELELT 148 (707)
Q Consensus 131 le~le~el~~~~~Ele~~ 148 (707)
++.++-++..+....+.+
T Consensus 79 ~E~Le~ri~tLekQe~~l 96 (119)
T COG1382 79 KETLELRIKTLEKQEEKL 96 (119)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 292
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.78 E-value=21 Score=28.76 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 73 DEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKN 129 (707)
Q Consensus 73 ~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ 129 (707)
.++...-.-|.-|+-+|++++..-..+..+...++...+.++.+-..+..+....+.
T Consensus 11 ~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444333333333333333
No 293
>PRK11519 tyrosine kinase; Provisional
Probab=83.64 E-value=52 Score=39.61 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=31.4
Q ss_pred hcccCcHHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHhhhcchhhHHHhhhCCccchhhhHHHHhhcC
Q 005229 462 VAVENSLEVLGFLHLLAAYRLAPAF-DREELESLLCIVAQHRQTPKLRRTLGFADKVPGLQCSTTAEG 528 (707)
Q Consensus 462 ~~~~~~l~a~~fl~~l~~fgi~~~f-~~~el~~l~~~~~~~~~~~~l~~~lgl~~k~~~~i~~li~~g 528 (707)
+|.|++.-+..|-..+|..|-..-+ |.| . +.|.+.+.+|+.. -+++.+.|...+
T Consensus 536 ~geGKTt~a~nLA~~la~~g~rvLlID~D---------l---r~~~~~~~~~~~~-~~gl~~~l~~~~ 590 (719)
T PRK11519 536 PSIGKTFVCANLAAVISQTNKRVLLIDCD---------M---RKGYTHELLGTNN-VNGLSDILIGQG 590 (719)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeCC---------C---CCCcHHHHhCCCC-CCCHHHHhCCCC
Confidence 4556777787887777777753322 332 1 1234555566653 467887776544
No 294
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=83.64 E-value=1.1 Score=52.76 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 005229 449 AMKVAGEWKKK 459 (707)
Q Consensus 449 A~~~A~~Wk~~ 459 (707)
-+..-.+|-..
T Consensus 400 L~~~l~~wE~e 410 (619)
T PF03999_consen 400 LKKKLEEWEEE 410 (619)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445556543
No 295
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=83.64 E-value=1.2e+02 Score=37.29 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 005229 286 IVYLKELKEKET-HFDSLKKGLEDRLQDLELK 316 (707)
Q Consensus 286 ~~~~~~~~el~~-~~~~le~~L~~~~~eL~~~ 316 (707)
+.+-.++.+|+. |++.+.+....+.++|...
T Consensus 1332 ealI~qLRelC~~h~~~l~k~~~~r~~el~~~ 1363 (1439)
T PF12252_consen 1332 EALIIQLRELCEAHQDNLAKTRKTRLQELTKQ 1363 (1439)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 344445556555 7777887777777777664
No 296
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=83.18 E-value=57 Score=33.22 Aligned_cols=20 Identities=5% Similarity=0.298 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005229 76 ELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 76 ~~~~~ei~~le~~i~e~~~e 95 (707)
+.++..|.+.+.++.+.+..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~ 46 (225)
T COG1842 27 KMLEQAIRDMESELAKARQA 46 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 297
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.16 E-value=47 Score=37.27 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005229 62 RLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLL 117 (707)
Q Consensus 62 ~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l 117 (707)
.+|..+++-...+.+..+.+|..+..++.++.+.-..--.+|..++...-+++.++
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~Ri 392 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRI 392 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555444444444444444444444443
No 298
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.15 E-value=29 Score=34.85 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQKL 187 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el 187 (707)
.+.+..+++.+-.+-..+++++
T Consensus 188 ~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 188 SEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHcccHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 299
>PRK11519 tyrosine kinase; Provisional
Probab=82.43 E-value=57 Score=39.28 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005229 78 REKKVGEAQRSIEEQEKQLAFKESKISSMQT 108 (707)
Q Consensus 78 ~~~ei~~le~~i~e~~~el~ele~ei~~l~~ 108 (707)
..+-+..|++++.+++.++...+..+...+.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555443
No 300
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=82.22 E-value=61 Score=32.95 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005229 64 WKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENE 114 (707)
Q Consensus 64 l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~ 114 (707)
|++-|+.-..++..-++-....-.+|..|...|-....+|..+-.+....+
T Consensus 76 LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk 126 (254)
T KOG2196|consen 76 LEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVK 126 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 334444444444444455455555555555555555555555544444443
No 301
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=81.73 E-value=11 Score=42.43 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=13.0
Q ss_pred cchhhhHHHHhhcCCccccc
Q 005229 515 DKVPGLQCSTTAEGRSAPSM 534 (707)
Q Consensus 515 ~k~~~~i~~li~~g~~~~a~ 534 (707)
+-+.+-|-.++.-.-||++-
T Consensus 512 ~~~~~tvlA~lR~rlqIP~r 531 (907)
T KOG2264|consen 512 HLLARTVLAALRYRLQIPTR 531 (907)
T ss_pred HHHHHHHHHHHHHhhCCCCc
Confidence 44556666777777777743
No 302
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=81.70 E-value=29 Score=38.17 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 005229 299 FDSLKKGLEDRLQDLE 314 (707)
Q Consensus 299 ~~~le~~L~~~~~eL~ 314 (707)
+++++..++-...+++
T Consensus 248 l~Sle~q~~~s~~qld 263 (447)
T KOG2751|consen 248 LDSLEAQIEYSQAQLD 263 (447)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444333333
No 303
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=81.55 E-value=10 Score=42.70 Aligned_cols=56 Identities=23% Similarity=0.279 Sum_probs=26.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005229 126 EVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVE 181 (707)
Q Consensus 126 ~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~ 181 (707)
.+..|+.+++.+.++++.+|+.....|++++..+...+.++..++.++++.+..++
T Consensus 90 sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~ 145 (907)
T KOG2264|consen 90 SVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLE 145 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 44445555555555555555555555555544433333333334444444333333
No 304
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.53 E-value=30 Score=28.84 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 005229 80 KKVGEAQRSIEEQE 93 (707)
Q Consensus 80 ~ei~~le~~i~e~~ 93 (707)
..|.-|+-+|++++
T Consensus 18 dtI~LLqmEieELK 31 (79)
T PRK15422 18 DTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 305
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=81.40 E-value=22 Score=31.43 Aligned_cols=12 Identities=8% Similarity=0.169 Sum_probs=4.3
Q ss_pred HHHHhHHHHHHH
Q 005229 126 EVKNSLMLCETK 137 (707)
Q Consensus 126 ~l~~ele~le~e 137 (707)
.++.++..+...
T Consensus 10 ~l~~~~~~l~~~ 21 (105)
T cd00632 10 QLQQQLQAYIVQ 21 (105)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 306
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.27 E-value=15 Score=35.56 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHH
Q 005229 73 DEVELREKKVGEAQ 86 (707)
Q Consensus 73 ~e~~~~~~ei~~le 86 (707)
.++..+..++..++
T Consensus 86 ~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 86 EELAELKKEVKSLE 99 (169)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 307
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=81.14 E-value=6.7 Score=46.25 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=9.7
Q ss_pred cCCchhHHHHHH
Q 005229 361 TSSGRYLQFLLN 372 (707)
Q Consensus 361 ~~~~~~l~~~~~ 372 (707)
.++|..+..+|.
T Consensus 416 lv~G~~~le~l~ 427 (619)
T PF03999_consen 416 LVDGERYLEYLE 427 (619)
T ss_dssp EETTEEHHHHHH
T ss_pred EEcCccHHHHHH
Confidence 478988888876
No 308
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.13 E-value=8.2 Score=31.52 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=28.6
Q ss_pred hhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhh
Q 005229 222 PASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKS 278 (707)
Q Consensus 222 ie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~l 278 (707)
+..+++.+..+...+.....++..+..|+++....+..+..++..++.+++.+..++
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555555555555555555555555555544443
No 309
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.02 E-value=61 Score=32.09 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005229 80 KKVGEAQRSIEEQEKQLAFKESKISSMQTL 109 (707)
Q Consensus 80 ~ei~~le~~i~e~~~el~ele~ei~~l~~~ 109 (707)
..+..+++.+..+..++..-++.+...++.
T Consensus 33 r~v~~l~ksf~~~~~E~~kee~~y~ea~ri 62 (222)
T KOG3215|consen 33 RLVEHLEKSFVLAKAEIEKEEKEYSEAKRI 62 (222)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhchhHHHHH
Confidence 345556666666666666666555555554
No 310
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=80.79 E-value=35 Score=37.51 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=26.3
Q ss_pred HHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHH
Q 005229 212 RKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKK 268 (707)
Q Consensus 212 ~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~ 268 (707)
...+.+++.+-+.+..+-...-++......+.-..+.++.+++.++......++.+.
T Consensus 210 ~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ 266 (447)
T KOG2751|consen 210 DHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLR 266 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444555566666665555555555443
No 311
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=80.66 E-value=67 Score=35.04 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 130 SLMLCETKLECEKKELELTQSSIKELSM 157 (707)
Q Consensus 130 ele~le~el~~~~~Ele~~e~~i~~l~~ 157 (707)
.+..++.++...+.++...+..+...+.
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 312
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.55 E-value=23 Score=34.22 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 005229 137 KLECEKKELELTQSS 151 (707)
Q Consensus 137 el~~~~~Ele~~e~~ 151 (707)
.+..+..++..++.+
T Consensus 117 ~i~~l~~e~~~l~~k 131 (169)
T PF07106_consen 117 EIEELEEEIEELEEK 131 (169)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 313
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=80.52 E-value=58 Score=31.53 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQKLDS 189 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~ 189 (707)
+..+......+...+......|..
T Consensus 81 ~~~l~~~w~~l~~~~~~r~~~L~~ 104 (213)
T cd00176 81 LEELNQRWEELRELAEERRQRLEE 104 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444
No 314
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=80.43 E-value=71 Score=32.52 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e 95 (707)
+...|.+.+.++..+...+.........++.++..+...+.++...
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677788888888888888888888888888888888888776
No 315
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.27 E-value=1.2e+02 Score=35.05 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=7.6
Q ss_pred hcccCcHHHHHHHHHHhhh
Q 005229 462 VAVENSLEVLGFLHLLAAY 480 (707)
Q Consensus 462 ~~~~~~l~a~~fl~~l~~f 480 (707)
+||+-|--.|||=-.++.+
T Consensus 433 SGGELSRimLAlk~i~~~~ 451 (557)
T COG0497 433 SGGELSRIMLALKVILSRK 451 (557)
T ss_pred chhHHHHHHHHHHHHHhcc
Confidence 3334443334444344444
No 316
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.72 E-value=1.8e+02 Score=36.74 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHhhH
Q 005229 312 DLELKEREFEKRVKEF 327 (707)
Q Consensus 312 eL~~~e~~~~~~~~E~ 327 (707)
++......+..+...+
T Consensus 460 ~l~~~~~~~~~~~~~l 475 (1042)
T TIGR00618 460 HLQESAQSLKEREQQL 475 (1042)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 317
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.59 E-value=76 Score=34.80 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=8.1
Q ss_pred HhhhCCccchhhhHH
Q 005229 508 RRTLGFADKVPGLQC 522 (707)
Q Consensus 508 ~~~lgl~~k~~~~i~ 522 (707)
.+++.++...-||+.
T Consensus 296 ~kt~l~~S~cnDI~~ 310 (459)
T KOG0288|consen 296 SKTVLPGSQCNDIVC 310 (459)
T ss_pred eccccccccccceEe
Confidence 345555555556554
No 318
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=79.37 E-value=84 Score=34.78 Aligned_cols=12 Identities=0% Similarity=-0.017 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 005229 170 QGKVRLHENEVE 181 (707)
Q Consensus 170 e~el~~~~~eL~ 181 (707)
.+.++.++.+|.
T Consensus 304 ~E~~Es~qtRis 315 (395)
T PF10267_consen 304 WEVMESCQTRIS 315 (395)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 319
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=79.04 E-value=1.5e+02 Score=35.36 Aligned_cols=12 Identities=50% Similarity=0.592 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 005229 135 ETKLECEKKELE 146 (707)
Q Consensus 135 e~el~~~~~Ele 146 (707)
..++..+++|++
T Consensus 603 keki~~~~~Ei~ 614 (762)
T PLN03229 603 KEKVEKMKKEIE 614 (762)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 320
>PRK09343 prefoldin subunit beta; Provisional
Probab=78.86 E-value=52 Score=30.00 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 60 ELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEK 94 (707)
Q Consensus 60 el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~ 94 (707)
++...-..+..++.++..+...+..++..+.+...
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~ 42 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINK 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444333
No 321
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=78.54 E-value=1.1e+02 Score=33.46 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005229 79 EKKVGEAQRSIEEQEKQLAFKESKISSMQT 108 (707)
Q Consensus 79 ~~ei~~le~~i~e~~~el~ele~ei~~l~~ 108 (707)
...+..++.++.+.+.++...+..+...+.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444
No 322
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=77.87 E-value=13 Score=30.94 Aligned_cols=67 Identities=22% Similarity=0.124 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHH
Q 005229 195 KKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELK 267 (707)
Q Consensus 195 ~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k 267 (707)
.+....|..++++..++..+|.-++..+... .....+.+.+++..++.++.+++.++....+.+...
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~------~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQKL------GPESIEELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777888888887777666521 122233333444444444444444444444444433
No 323
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.22 E-value=51 Score=29.05 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005229 83 GEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELE 146 (707)
Q Consensus 83 ~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele 146 (707)
..|..+...+++-..+-+.+-..++..+...+..|...+.+.+.+.-.-.++...+..++.+++
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444444444444
No 324
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=76.46 E-value=90 Score=31.51 Aligned_cols=39 Identities=23% Similarity=0.189 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005229 67 LIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISS 105 (707)
Q Consensus 67 ~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~ 105 (707)
+++++..+.+.+-+.+..++.+.+.+.++++.+...+..
T Consensus 44 e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555544444444444444444433
No 325
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=76.41 E-value=54 Score=28.94 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.5
Q ss_pred HHHHHhh
Q 005229 33 SLSVSLN 39 (707)
Q Consensus 33 ~~~~el~ 39 (707)
..+..+.
T Consensus 13 ~v~~~l~ 19 (108)
T PF02403_consen 13 EVRENLK 19 (108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 326
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=76.25 E-value=1.3e+02 Score=33.33 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=17.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 154 ELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDS 189 (707)
Q Consensus 154 ~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~ 189 (707)
+++-++.-..+.+..++.++..+..+|.+++.+.-.
T Consensus 313 e~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~ 348 (554)
T KOG4677|consen 313 ETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRH 348 (554)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333343333344555555555555555555554333
No 327
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=75.29 E-value=67 Score=29.42 Aligned_cols=13 Identities=8% Similarity=0.327 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 005229 135 ETKLECEKKELEL 147 (707)
Q Consensus 135 e~el~~~~~Ele~ 147 (707)
+.++...+.++..
T Consensus 83 ~~dv~nkq~~l~A 95 (136)
T PF11570_consen 83 QKDVQNKQNKLKA 95 (136)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 328
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=75.11 E-value=1.2e+02 Score=32.35 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=6.4
Q ss_pred hhhhhhhhHHHHHHHH
Q 005229 249 ELISKGKTIAECSKEV 264 (707)
Q Consensus 249 Ele~l~~~l~e~~~~l 264 (707)
++...+..+......+
T Consensus 187 ~~~~~~~~l~~a~~~l 202 (327)
T TIGR02971 187 EVKSALEAVQQAEALL 202 (327)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444443333
No 329
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=75.01 E-value=37 Score=33.58 Aligned_cols=7 Identities=57% Similarity=0.354 Sum_probs=2.5
Q ss_pred HHHHHHh
Q 005229 96 LAFKESK 102 (707)
Q Consensus 96 l~ele~e 102 (707)
|.+++.+
T Consensus 105 La~Le~~ 111 (195)
T PF12761_consen 105 LAELEEK 111 (195)
T ss_pred HHHHHHH
Confidence 3333333
No 330
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=74.85 E-value=36 Score=39.24 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 53 KCQAYQKELRLWKNLIEECYDEVELREKKVGEA 85 (707)
Q Consensus 53 ~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~l 85 (707)
++..+++++..++.++..+..++..++.++..+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444444444444
No 331
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=74.32 E-value=55 Score=30.85 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 005229 173 VRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDP 222 (707)
Q Consensus 173 l~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~ei 222 (707)
+..++++|-.....+....+.+.....+++.+++.+..+...++....++
T Consensus 53 ~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~ 102 (157)
T COG3352 53 MTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDF 102 (157)
T ss_pred HHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333334444444444444444444433333333333
No 332
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=74.09 E-value=93 Score=30.56 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 54 CQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSI 89 (707)
Q Consensus 54 ~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i 89 (707)
+..+.+.-...-..+..++.++..+.+.+.+++..+
T Consensus 4 l~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 4 LDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555566666666666777777777776666
No 333
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=73.02 E-value=1.5e+02 Score=32.31 Aligned_cols=30 Identities=10% Similarity=0.013 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Q 005229 194 QKKYFDDVELKKRELNEIRKYIEELNQDPA 223 (707)
Q Consensus 194 i~el~~ele~k~~e~~e~~~ei~~l~~eie 223 (707)
+..++.+++.+.+.+.....++.-+...++
T Consensus 423 lqsvqRELeVLSEQYSQKCLEnahLaqalE 452 (593)
T KOG4807|consen 423 LQSVQRELEVLSEQYSQKCLENAHLAQALE 452 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555444443333
No 334
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=72.91 E-value=52 Score=27.63 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhh
Q 005229 230 RFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKS 278 (707)
Q Consensus 230 ~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~l 278 (707)
+.++.+++.+..+....+...+.++..+.....++..++..+-.++..-
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h 55 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAH 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444443333333
No 335
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=72.15 E-value=69 Score=28.23 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005229 52 NKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEE 112 (707)
Q Consensus 52 ~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e 112 (707)
.++..+++-+.+-...-..+..++...+..|..++.+++.+...-..+.+++..++.+++.
T Consensus 12 aQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 12 AQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555666666666666666666666666666666666666666663
No 336
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=71.25 E-value=50 Score=35.51 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQK 186 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~e 186 (707)
++.+++++.+....+.+.+.-
T Consensus 70 i~~L~~~Ik~r~~~l~DmEa~ 90 (330)
T PF07851_consen 70 IEKLEEDIKERRCQLFDMEAF 90 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHhh
Confidence 444444455555555555533
No 337
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=70.57 E-value=1.2e+02 Score=30.39 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=13.8
Q ss_pred HHHHHhhhchhhHHhhhhhhhhHHHHHHHHH
Q 005229 235 SIEECSKEIPGKKEELISKGKTIAECSKEVE 265 (707)
Q Consensus 235 ~le~l~~El~~l~~Ele~l~~~l~e~~~~le 265 (707)
.-..+..++..+.+++..+-.+...+.....
T Consensus 157 ~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~ 187 (206)
T PF14988_consen 157 FTRSIKRENQQLRKELLQLIQEAQKLEARKS 187 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555444444443333333
No 338
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=70.57 E-value=34 Score=32.64 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHH
Q 005229 64 WKNLIEECYDEVELREKKVGEAQRSIEEQEK---QLAFKESKISSMQTLIE 111 (707)
Q Consensus 64 l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~---el~ele~ei~~l~~~i~ 111 (707)
.+........++..+..++....++|..++. +.++++.+|..++....
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3444444444444444445455545544444 24444444444444443
No 339
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.54 E-value=1.8e+02 Score=32.38 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 005229 442 NAQVRDEAMKVAGEWKKKMR 461 (707)
Q Consensus 442 ~~~v~~~A~~~A~~Wk~~~~ 461 (707)
..+.-..-+.+..+||.+.+
T Consensus 376 ~~dl~k~~k~~~~~~kk~Ek 395 (438)
T COG4487 376 QLDLEKEKKAIIRAWKKREK 395 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666778889998863
No 340
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=70.23 E-value=1.9e+02 Score=32.43 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 132 MLCETKLECEKKELELTQSSIKELSME 158 (707)
Q Consensus 132 e~le~el~~~~~Ele~~e~~i~~l~~e 158 (707)
..+..+-+.+...++.++..|+.++.+
T Consensus 209 ~~L~~~sd~Ll~kVdDLQD~VE~LRkD 235 (424)
T PF03915_consen 209 KKLSEESDRLLTKVDDLQDLVEDLRKD 235 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 341
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=69.83 E-value=1.7e+02 Score=31.74 Aligned_cols=143 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------
Q 005229 61 LRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLC------ 134 (707)
Q Consensus 61 l~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~l------ 134 (707)
+..+-.++...-.....+..+.+.+-+.......++..++--++.....+.-.+.++...++-.+.--.....-
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~ 213 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGN 213 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCc
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 135 -ETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKR 206 (707)
Q Consensus 135 -e~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~ 206 (707)
+..+..+-.--+..+..|.++...+-.++..+..+ +.-+..-.+....++-.+++.+..+.-++-.++.
T Consensus 214 ~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~---~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~ 283 (464)
T KOG4637|consen 214 SEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKAL---IQALRSNSENRLCELMELDKAMNSLKPDLIQLRK 283 (464)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHHH
No 342
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=69.30 E-value=36 Score=36.54 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=35.2
Q ss_pred HHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhh
Q 005229 226 DKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLF 281 (707)
Q Consensus 226 ~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~l 281 (707)
.++-++++++.+++++.+....+.++++.+....+.+.+...+..+..+...+..+
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666666666666666666666666555555555544
No 343
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=68.78 E-value=1.9e+02 Score=35.25 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=2.6
Q ss_pred hhCCCC
Q 005229 403 MSGFYP 408 (707)
Q Consensus 403 ~~~~~~ 408 (707)
|..|+.
T Consensus 761 V~~f~~ 766 (782)
T PRK00409 761 VKSFRD 766 (782)
T ss_pred eeeeee
Confidence 344444
No 344
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=68.12 E-value=1.3e+02 Score=29.64 Aligned_cols=97 Identities=19% Similarity=0.152 Sum_probs=46.8
Q ss_pred cChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHH
Q 005229 220 QDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHF 299 (707)
Q Consensus 220 ~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~ 299 (707)
.+|+..-..+++-+++-+.|..-+.-++.+++.....-..+..++.....++..+..++.. .+..|..-+.+|
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~-------ke~~~~~ee~~~ 132 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ-------KEAEWREEEENF 132 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3344444444444555555544455555555555554444444444444444444433333 223344444433
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHH
Q 005229 300 D----SLKKGLEDRLQDLELKEREFEKR 323 (707)
Q Consensus 300 ~----~le~~L~~~~~eL~~~e~~~~~~ 323 (707)
. +-...|-.++.++..+.+.|..-
T Consensus 133 ~~y~~~eh~rll~LWr~v~~lRr~f~el 160 (182)
T PF15035_consen 133 NQYLSSEHSRLLSLWREVVALRRQFAEL 160 (182)
T ss_pred HhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 3 33555666666666666555533
No 345
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.88 E-value=65 Score=36.22 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=17.8
Q ss_pred cccccccccccCCCCCCCCCCC
Q 005229 530 SAPSMLVGTSAPLNQSVSSPMN 551 (707)
Q Consensus 530 ~~~a~~~~~~~~l~~~~~p~~~ 551 (707)
||.+|-|++.+|....+|-|..
T Consensus 309 qV~SiTFVF~DGtirTvp~~~~ 330 (472)
T TIGR03752 309 QVRSLTFVFNDGTIRTVPRPRN 330 (472)
T ss_pred eEEEEEEEEeCCeEEEecCCCC
Confidence 5678899999999998876654
No 346
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=67.81 E-value=2.3e+02 Score=33.59 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhhh
Q 005229 259 ECSKEVELKKNQLN 272 (707)
Q Consensus 259 e~~~~le~k~~ele 272 (707)
....++-.+..++.
T Consensus 630 ~~~~~l~~~~e~l~ 643 (809)
T KOG0247|consen 630 ELQSKLWFKDEKLK 643 (809)
T ss_pred HHHHHhcccHHHHH
Confidence 33333333333333
No 347
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=67.25 E-value=2.3e+02 Score=32.23 Aligned_cols=154 Identities=8% Similarity=0.047 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 46 SAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYD 125 (707)
Q Consensus 46 ~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~ 125 (707)
+..-+..++.....++..+.....++......+......+.....+...--..++.+-......+..+...-..+..+|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~ 116 (475)
T PRK10361 37 EREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFE 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 126 EVKNSL------MLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFD 199 (707)
Q Consensus 126 ~l~~el------e~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ 199 (707)
.+..++ ...+.....+..=+.-+++.|+..++.++.. -..-.++...+..+|..+...-..+..+-..+++
T Consensus 117 ~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~---~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 117 NLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDS---FGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 005229 200 DVE 202 (707)
Q Consensus 200 ele 202 (707)
.+.
T Consensus 194 ALk 196 (475)
T PRK10361 194 ALK 196 (475)
T ss_pred HHc
No 348
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=66.65 E-value=62 Score=37.33 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005229 169 LQGKVRLHENEVESLEQKLDSM 190 (707)
Q Consensus 169 le~el~~~~~eL~~~e~el~~~ 190 (707)
++.++.+++.+|..++.++..+
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444443
No 349
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=66.21 E-value=1.9e+02 Score=30.86 Aligned_cols=15 Identities=27% Similarity=0.466 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhhhhh
Q 005229 333 ELDSIRKAVEDRSKN 347 (707)
Q Consensus 333 ~l~~~~~~~~~~~~~ 347 (707)
+|..+.++...|..+
T Consensus 244 eLa~L~Ge~k~~~qa 258 (301)
T PF06120_consen 244 ELASLKGEAKARKQA 258 (301)
T ss_pred HHHhCcchHHHHHHH
Confidence 333334444444433
No 350
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=65.81 E-value=1.9e+02 Score=30.89 Aligned_cols=202 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005229 61 LRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLEC 140 (707)
Q Consensus 61 l~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~ 140 (707)
+.-+..-+..+.+-....-..+..+++....+-.+|+...+.-.....+=+.+ .--++++.+.++..|++-..+...
T Consensus 88 l~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDl---t~~LEKEReqL~QQiEFe~~e~kK 164 (561)
T KOG1103|consen 88 LDILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDL---TAHLEKEREQLQQQIEFEIEEKKK 164 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchH---HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 141 EKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDS-MRKQQKKYFDDVELKKRELNEIRKYIEELN 219 (707)
Q Consensus 141 ~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~-~~~ei~el~~ele~k~~e~~e~~~ei~~l~ 219 (707)
...+.+.++-.+.+-++.-+++---+-..-+...-.-.+...+-.+|.- ++++-.....--+..-.+-..-...-.+.+
T Consensus 165 ~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqve 244 (561)
T KOG1103|consen 165 AEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVE 244 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHH
Q ss_pred cChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHH
Q 005229 220 QDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVE 265 (707)
Q Consensus 220 ~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le 265 (707)
+.|+++..+.+.+..+++..++...-++.|.+++++-+..++....
T Consensus 245 k~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 245 KLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
No 351
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.58 E-value=1.5e+02 Score=29.38 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHH
Q 005229 49 EWINKCQAYQKELRL----WKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKD-KEKL 123 (707)
Q Consensus 49 l~~~~~~~~~~el~~----l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~-~e~e 123 (707)
|+..-...+..-+.. +++.+.-...+.-..+.....++..|..++.++..++.++..++...+..+..... .+..
T Consensus 85 LL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~ 164 (189)
T PF10211_consen 85 LLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEE 164 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 005229 124 YDEVKNSLMLCETKLECEKKELE 146 (707)
Q Consensus 124 ~~~l~~ele~le~el~~~~~Ele 146 (707)
....+.+++.++.....+..+++
T Consensus 165 ~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 165 EKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 352
>PF15456 Uds1: Up-regulated During Septation
Probab=65.15 E-value=1.1e+02 Score=27.99 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=14.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 129 NSLMLCETKLECEKKELELTQSSIKELSME 158 (707)
Q Consensus 129 ~ele~le~el~~~~~Ele~~e~~i~~l~~e 158 (707)
.++......++++..++...+.++..++..
T Consensus 81 eel~~~~rk~ee~~~eL~~le~R~~~~~~r 110 (124)
T PF15456_consen 81 EELAESDRKCEELAQELWKLENRLAEVRQR 110 (124)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555544444443
No 353
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=65.01 E-value=83 Score=26.41 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=29.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 250 LISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTR----TIVYLKELKEKETHFDSLKKGLEDRLQDLE 314 (707)
Q Consensus 250 le~l~~~l~e~~~~le~k~~ele~l~~~le~le~~----~~~~~~~~~el~~~~~~le~~L~~~~~eL~ 314 (707)
+......+.....++......++.+...-..+... ...+...+..+...+..+...+..+...|+
T Consensus 36 ~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 36 LEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33333344444444444444444333333333111 223344455555556666666666655554
No 354
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=64.98 E-value=1.4e+02 Score=30.87 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 58 QKELRLWKNLIEECYDEVELREKKVGE 84 (707)
Q Consensus 58 ~~el~~l~~~i~e~~~e~~~~~~ei~~ 84 (707)
+.++..++.++.+...-+..++.++..
T Consensus 5 q~~l~~l~~~~~~~~~L~~kLE~DL~~ 31 (248)
T PF08172_consen 5 QKELSELEAKLEEQKELNAKLENDLAK 31 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 355
>PRK10698 phage shock protein PspA; Provisional
Probab=64.85 E-value=1.7e+02 Score=29.78 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 005229 82 VGEAQRSIEEQEKQ 95 (707)
Q Consensus 82 i~~le~~i~e~~~e 95 (707)
|.+++..+.+.+..
T Consensus 33 i~em~~~l~~~r~a 46 (222)
T PRK10698 33 IQEMEDTLVEVRST 46 (222)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 356
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=64.52 E-value=1.1e+02 Score=34.26 Aligned_cols=145 Identities=9% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHH-----HHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 7 EKIMGLGQKRIGE-----FNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKK 81 (707)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~e 81 (707)
+..+|.+..+... .+.+++..+..+...+..|......-.+-=-....+....-+..++.++-+.+.++..+..-
T Consensus 229 E~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~ 308 (434)
T PRK15178 229 EQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVN 308 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 82 VGEAQRSIEEQEKQLAFKESKISSMQTLIEENE--GLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 82 i~~le~~i~e~~~el~ele~ei~~l~~~i~e~~--~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
+..=..+|..++.+|..++++|...+..+..-. ..+...-.+++.+..+.+..++.+.....-++..+.+
T Consensus 309 ~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~E 380 (434)
T PRK15178 309 GLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQ 380 (434)
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 357
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=64.36 E-value=59 Score=31.05 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHH
Q 005229 65 KNLIEECYDEVELREKKVGEAQR---SIEEQEKQLAFKESKIS 104 (707)
Q Consensus 65 ~~~i~e~~~e~~~~~~ei~~le~---~i~e~~~el~ele~ei~ 104 (707)
+.+++.+..++....+.|..|.. ++++++.+|+.++....
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333 44444444444444443
No 358
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=64.35 E-value=67 Score=25.08 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005229 68 IEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSM 106 (707)
Q Consensus 68 i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l 106 (707)
|+++..++..+..++..|..++..++.++...+.+-...
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443333333333333
No 359
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=63.39 E-value=1e+02 Score=26.78 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=8.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 005229 126 EVKNSLMLCETKLECEKKELE 146 (707)
Q Consensus 126 ~l~~ele~le~el~~~~~Ele 146 (707)
.+..++..+...+..+..++.
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~ 29 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLR 29 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 360
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=63.30 E-value=1.4e+02 Score=28.29 Aligned_cols=65 Identities=9% Similarity=0.161 Sum_probs=40.4
Q ss_pred hHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHH
Q 005229 224 SKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVY 288 (707)
Q Consensus 224 ~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~ 288 (707)
.....++....+.+.+..++-.....+....+.+.....+++.++..++.+....+......+-|
T Consensus 41 ~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf 105 (157)
T COG3352 41 IDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPF 105 (157)
T ss_pred CChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34455566666666666666666666666666666666666666666666666666555543333
No 361
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=63.16 E-value=1.7e+02 Score=29.35 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005229 48 QEWINKCQAYQKELRLWKNLIEECYDEVELREK-KVGEAQRSIEEQEKQLAFKESKISSMQTLIEEN 113 (707)
Q Consensus 48 ~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~-ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~ 113 (707)
.|+..+-......+..+.+.......++..-.. -++.-...+..+...+.+.++.+..++..+..+
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l 73 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQAL 73 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555554444333322221 122233334444444444444444444444433
No 362
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=63.13 E-value=3.3e+02 Score=32.66 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005229 81 KVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLL 117 (707)
Q Consensus 81 ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l 117 (707)
.+..++..+.....+++++.++++.+-.+++++...|
T Consensus 996 h~kefE~~mrdhrselEe~kKe~eaiineiee~eaeI 1032 (1424)
T KOG4572|consen 996 HEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEI 1032 (1424)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555444
No 363
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=62.57 E-value=2.6e+02 Score=31.31 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHhhhHhhHHHHHH
Q 005229 22 CELELKENELNSLSV 36 (707)
Q Consensus 22 ~eL~l~e~eL~~~~~ 36 (707)
.++..+.++|..+++
T Consensus 151 ~Ev~~LRreLavLRQ 165 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQ 165 (424)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555543
No 364
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=61.80 E-value=36 Score=39.84 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=8.3
Q ss_pred EcCCCceEEEE
Q 005229 644 QRPWGKWAAEI 654 (707)
Q Consensus 644 ~~~~g~w~a~i 654 (707)
..+.|||.+..
T Consensus 1081 edpSGWw~gk~ 1091 (1106)
T KOG0162|consen 1081 EDPSGWWLGKL 1091 (1106)
T ss_pred cCCCcchhhcc
Confidence 34789998885
No 365
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=61.38 E-value=2.8e+02 Score=31.29 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-hhHHHhHHHHHHHHHHHhhhchhhHHh--
Q 005229 173 VRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDP-ASKDKELRFVQQSIEECSKEIPGKKEE-- 249 (707)
Q Consensus 173 l~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~ei-e~~~~el~~~~~~le~l~~El~~l~~E-- 249 (707)
+..+..+.......+.++..++....-.+...+.++.+....+...-.++ ....+++..+++....+.++...++.+
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~ 366 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLS 366 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444433333333444444444444433322222 233333444555555555555555544
Q ss_pred -hhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhh
Q 005229 250 -LISKGKTIAECSKEVELKKNQLNLIQDKSSLFQ 282 (707)
Q Consensus 250 -le~l~~~l~e~~~~le~k~~ele~l~~~le~le 282 (707)
.-...-++.+++++++..+.-++.+-.....+.
T Consensus 367 ~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~ 400 (458)
T COG3206 367 KLPKLQVQLRELEREAEAARSLYETLLQRYQELS 400 (458)
T ss_pred hchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777776665555544443
No 366
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=60.87 E-value=2.7e+02 Score=30.97 Aligned_cols=139 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECY--------DEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKE 121 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~--------~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e 121 (707)
+..++...+..+..+..++..+. .+......+...++..+..++.++..+...+...+..++.....+....
T Consensus 94 ~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 173 (421)
T TIGR03794 94 LRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKRDR 173 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q ss_pred HHHHHHH------HhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 122 KLYDEVK------NSLMLCETKL-ECEKKELELTQSSIKELSMEFHSEE----EKLELLQGKVRLHENEVESLEQKLD 188 (707)
Q Consensus 122 ~e~~~l~------~ele~le~el-~~~~~Ele~~e~~i~~l~~ele~~e----~~l~~le~el~~~~~eL~~~e~el~ 188 (707)
-..+... .+.+..+... ...+..+..+...+..+..-...+. .++..++.++...+.++...+..+.
T Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 174 ILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 367
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=60.72 E-value=2.6e+02 Score=30.57 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 134 CETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQK 186 (707)
Q Consensus 134 le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~e 186 (707)
.+.++..++.++...+.++.-...+ +...+++.++.++.+|..++..
T Consensus 322 qQnEi~nLKqElasmeervaYQsyE------RaRdIqEalEscqtrisKlEl~ 368 (455)
T KOG3850|consen 322 QQNEIANLKQELASMEERVAYQSYE------RARDIQEALESCQTRISKLELQ 368 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554443333 2344555555555555554433
No 368
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=60.56 E-value=2.3e+02 Score=34.41 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=3.8
Q ss_pred hhCCCCCC
Q 005229 403 MSGFYPPH 410 (707)
Q Consensus 403 ~~~~~~~~ 410 (707)
|..|..++
T Consensus 750 V~~f~~a~ 757 (771)
T TIGR01069 750 VKSFRDAP 757 (771)
T ss_pred eeeecccC
Confidence 45555433
No 369
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=60.18 E-value=89 Score=36.32 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005229 80 KKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEF 159 (707)
Q Consensus 80 ~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~el 159 (707)
+.++.++.++++.........+++. -+..+++++..++.++..-=.--.++.....+++++..++......+..+..++
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 160 HSEEEKLELLQGKVRLHENEVESLEQKLDSM 190 (707)
Q Consensus 160 e~~e~~l~~le~el~~~~~eL~~~e~el~~~ 190 (707)
... .+.++..+..+++--.+=-+.|.+.
T Consensus 243 ~~~---~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 243 QND---KKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHh---HHHHHHHHHHHHhccHhHHHHHHHH
No 370
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=60.13 E-value=80 Score=32.65 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI 215 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei 215 (707)
+.-+..+-+.+..+..+++.++.....++..++.+++.++.....+=.++
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666666666666655544443333
No 371
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=59.84 E-value=2.3e+02 Score=29.74 Aligned_cols=22 Identities=5% Similarity=0.046 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 005229 137 KLECEKKELELTQSSIKELSME 158 (707)
Q Consensus 137 el~~~~~Ele~~e~~i~~l~~e 158 (707)
....+..++..+-++...+...
T Consensus 267 REK~lNnqL~~l~q~fr~a~~~ 288 (384)
T KOG0972|consen 267 REKSLNNQLASLMQKFRRATDT 288 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333333
No 372
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=58.54 E-value=1.6e+02 Score=27.57 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=14.2
Q ss_pred HHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 005229 236 IEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQD 276 (707)
Q Consensus 236 le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~ 276 (707)
...+...+-.++.+++.++.++......+..++.++.....
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333343444444333333333333333333
No 373
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=58.52 E-value=60 Score=28.51 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHH
Q 005229 191 RKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEE 238 (707)
Q Consensus 191 ~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~ 238 (707)
.++|+.+...+...-+.+.++..+++...+.|..+.+.+....++++.
T Consensus 52 geqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 52 GEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444444444444444444443
No 374
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=58.44 E-value=2.9e+02 Score=30.56 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=5.5
Q ss_pred HHhHHHHHHHHHHH
Q 005229 100 ESKISSMQTLIEEN 113 (707)
Q Consensus 100 e~ei~~l~~~i~e~ 113 (707)
++.+.++++.++..
T Consensus 258 Eqsl~dlQk~Leka 271 (575)
T KOG4403|consen 258 EQSLEDLQKRLEKA 271 (575)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 375
>COG5293 Predicted ATPase [General function prediction only]
Probab=58.18 E-value=3.1e+02 Score=30.73 Aligned_cols=187 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 5 RVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGE 84 (707)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~ 84 (707)
++++.++.+++++-++.++==..+..++--+..+++..-.- ..+-..-+..--..+-.++.+-.+++....+.+-+
T Consensus 259 e~ee~vn~v~~~I~e~~n~~i~~q~~~~~~~~slk~~~~~~----pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e 334 (591)
T COG5293 259 ETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKEQILFC----PDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITE 334 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcchhhccCC----hHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 85 -----AQRSIEEQEKQLAFKESKISSMQTLIEENEGLL--KDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSM 157 (707)
Q Consensus 85 -----le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l--~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ 157 (707)
++.+|.+++.+|.+...++..+.++..+.-.-+ ...-.+++.+.+++-.+..++.++...++.+ .
T Consensus 335 ~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l--------~ 406 (591)
T COG5293 335 ERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPL--------R 406 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHH--------H
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 158 EFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL 203 (707)
Q Consensus 158 ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~ 203 (707)
.+..+...+..++.++-++...+-...++...+-.++..+-+.+..
T Consensus 407 k~~~~~~~i~~lkhe~l~~~~r~y~e~q~q~~~~~~~~~lF~~~~r 452 (591)
T COG5293 407 KLHALDQYIGTLKHECLDLEERIYTEVQQQCSLFASIGRLFKEMIR 452 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
No 376
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=58.03 E-value=2.4e+02 Score=29.30 Aligned_cols=269 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhH----HHH
Q 005229 157 MEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKEL----RFV 232 (707)
Q Consensus 157 ~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el----~~~ 232 (707)
.++.++..+...+.+.......-|..+..+++..+.+-+.+....+.++-.+..++.+++-+-.=--....+. +++
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdL 88 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDL 88 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHH
Q ss_pred HHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHH---HHhHHHHHH----HHHHHHHH
Q 005229 233 QQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVY---LKELKEKET----HFDSLKKG 305 (707)
Q Consensus 233 ~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~---~~~~~el~~----~~~~le~~ 305 (707)
-.-++....++..+..+++.+..+...+...-+..+...-.++++......+.... +++|..-+. |++.++..
T Consensus 89 aa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLkak 168 (389)
T KOG4687|consen 89 AADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLKAK 168 (389)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhhhhhhhhhccCCCCCcccCCchhHHHHHHhhhccchhhhhhh
Q 005229 306 LEDRLQDLELKEREFEKRVKEFELREKELDSIRKAVEDRSKNLLLQVKIKDPENLTSSGRYLQFLLNQHLQKHDSIFCKV 385 (707)
Q Consensus 306 L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~ 385 (707)
-..+.-+|.+..-.-+..+.|-+.-+-...-+ .++-.+.......-|-..++|| ...-|..+.....+..+-
T Consensus 169 ~a~LafDLkamideKEELimERDa~kcKa~RL-----nhELfvaLnadkrhpr~~DiDg---ll~ENkfLhaklkiadeE 240 (389)
T KOG4687|consen 169 CAGLAFDLKAMIDEKEELIMERDAMKCKAARL-----NHELFVALNADKRHPRAEDIDG---LLAENKFLHAKLKIADEE 240 (389)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHh-----hhHHHHHHcCCCCCchhhhhHH---HHHhhHHHHHHhcccHHH
Q ss_pred HHHHhhcCCchhhHHHhh-----hCCCCCCCCCCCcccchhhhHHHHHHHHhh
Q 005229 386 FDTIKSARDPALLVLHAM-----SGFYPPHSREGDLEFDVSIVRRSCILLLEQ 433 (707)
Q Consensus 386 ~~al~~a~dpa~lVLd~~-----~~~~~~~~~~~~~~~~~~~~r~~c~~lle~ 433 (707)
+.-++.+..-.+-.+||. ..--+.....++++.+.++.-+----||++
T Consensus 241 lEliK~siaKYKqM~dAknvqtmrkkgi~a~~G~dknedaiin~kQikeiLaS 293 (389)
T KOG4687|consen 241 LELIKMSIAKYKQMADAKNVQTMRKKGIKAGEGDDKNEDAIINMKQIKEILAS 293 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCCCCCcchheecHHHHHHHHHc
No 377
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.80 E-value=60 Score=36.48 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=10.8
Q ss_pred cceeeeEcCCCceEEEE
Q 005229 638 HFRGVRQRPWGKWAAEI 654 (707)
Q Consensus 638 ~~rGV~~~~~g~w~a~i 654 (707)
-|--||-.+..++..||
T Consensus 438 sFdAVyVppG~~vavHi 454 (472)
T TIGR03752 438 SFDAVYVPPGAQVAVHI 454 (472)
T ss_pred cccEEEeCCCCEEEEEe
Confidence 36666666666666666
No 378
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=57.78 E-value=2.6e+02 Score=29.76 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---H
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYD---E 126 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~---~ 126 (707)
........+..+......+..+...+...+-....+...+.....++...+..+...+..+...+..++..+.-++ .
T Consensus 53 ~~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~i 132 (327)
T TIGR02971 53 RTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAV 132 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 127 VKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQG-----KVRLHENEVESLEQKLDSMRKQQK 195 (707)
Q Consensus 127 l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~-----el~~~~~eL~~~e~el~~~~~ei~ 195 (707)
-+.+++..+..+...+.+++..+..+. ..+...+..+..+.. ++...+.++...+..+......++
T Consensus 133 S~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 133 SASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 379
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=57.69 E-value=1e+02 Score=24.94 Aligned_cols=62 Identities=16% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005229 60 ELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKE 121 (707)
Q Consensus 60 el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e 121 (707)
++..+..+++.+-.....+..+-..|..+...+..+-..+..+.+.....|+.+-..++.++
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
No 380
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.97 E-value=2e+02 Score=28.04 Aligned_cols=134 Identities=13% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005229 97 AFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELEL-TQSSIKELSMEFHSEEEKLELLQGKVRL 175 (707)
Q Consensus 97 ~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~-~e~~i~~l~~ele~~e~~l~~le~el~~ 175 (707)
.+-+.-...+...+..--..+...--....++...-.+..++.+++.++.. .+..+..++.+.+.+..+++.++.+
T Consensus 19 ~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~--- 95 (177)
T PF07798_consen 19 EQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQE--- 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHH
Q 005229 176 HENEVESLEQKLDS-MRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSI 236 (707)
Q Consensus 176 ~~~eL~~~e~el~~-~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~l 236 (707)
+..++...+.++.. ++.+-.....+....+.++.++..++.. +|..++.+++..+-.+
T Consensus 96 L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~---ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 96 LREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDT---EIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
No 381
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=56.91 E-value=1.1e+02 Score=34.30 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 23 ELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESK 102 (707)
Q Consensus 23 eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~e 102 (707)
+++.........+..+....... ...++-.+..+...+..+++.+..+...+.++|..+.+.- .+.+.+..+
T Consensus 3 D~k~ir~n~~~v~~~l~~R~~~~----~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~----~~~~~l~~~ 74 (425)
T PRK05431 3 DIKLIRENPEAVKEALAKRGFPL----DVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKG----EDAEALIAE 74 (425)
T ss_pred CHHHHHhCHHHHHHHHHhcCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CcHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005229 103 ISSMQTLIEENEGLLKDKEKLYDEVKNSL 131 (707)
Q Consensus 103 i~~l~~~i~e~~~~l~~~e~e~~~l~~el 131 (707)
...+++++.+++..+..++.++...-..+
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 75 VKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 382
>PRK00736 hypothetical protein; Provisional
Probab=56.81 E-value=86 Score=25.47 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKE 100 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele 100 (707)
+..++..++..+.-.+..|+++..-+-...++|..+++.+..+...+.+.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 383
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=56.81 E-value=1.5e+02 Score=26.71 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------H--------------
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEK-------------------------Q-------------- 95 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~-------------------------e-------------- 95 (707)
+.+...+..+...++.+...+..+...+.+++.-++.++. +
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Q ss_pred -------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005229 96 -------LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLC 134 (707)
Q Consensus 96 -------l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~l 134 (707)
+..++++++.++..++.++..+..+...+..+...+..+
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 384
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=56.75 E-value=2.6e+02 Score=29.34 Aligned_cols=227 Identities=11% Similarity=0.093 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhHHHHHHHHHHH
Q 005229 47 AQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSI-------------EEQEKQLAFKESKISSMQTLIEEN 113 (707)
Q Consensus 47 ~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i-------------~e~~~el~ele~ei~~l~~~i~e~ 113 (707)
+.-+...+..+..-...+.+.+.++...+..-..+-..+.... ..+..++..+..-+......=..+
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~ 103 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQL 103 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005229 114 EGLLKDKEKLYDEVKNSLMLCETKLECEK-----------KELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVES 182 (707)
Q Consensus 114 ~~~l~~~e~e~~~l~~ele~le~el~~~~-----------~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~ 182 (707)
...+......+..+..-.+.+...+-... ..+..+-..++.+..+...+..++.. .-.-+.+..-|..
T Consensus 104 ~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~-~~~~d~i~~~l~~ 182 (296)
T PF13949_consen 104 RSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKE-KLQNDDISKLLSE 182 (296)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccHHHHHHH
Q ss_pred HHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH---------HHhHHHHHHHHHHHhhhchhhHH
Q 005229 183 LEQ----KLDS-MRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASK---------DKELRFVQQSIEECSKEIPGKKE 248 (707)
Q Consensus 183 ~e~----el~~-~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~---------~~el~~~~~~le~l~~El~~l~~ 248 (707)
... .... ...+++.+...+..+...+.....-+..+....+.+ ....+..-+.+..--.-+..+..
T Consensus 183 ~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~~~r~~~~~~l~~a~~~y~el~~ 262 (296)
T PF13949_consen 183 LNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQKERESALQRLEAAYDAYKELSS 262 (296)
T ss_dssp HHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhHH
Q 005229 249 ELISKGKTIAECSKEVELKKNQLNLI 274 (707)
Q Consensus 249 Ele~l~~~l~e~~~~le~k~~ele~l 274 (707)
.+.+-.+=+..+...+..+...++.+
T Consensus 263 ~l~eG~~FY~~L~~~~~~l~~~~~~f 288 (296)
T PF13949_consen 263 NLEEGLKFYNDLLEILNKLQQKVEDF 288 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
No 385
>PRK12705 hypothetical protein; Provisional
Probab=56.70 E-value=3.6e+02 Score=31.03 Aligned_cols=317 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhh
Q 005229 168 LLQGKVRLHENEVESLEQKLDS-MRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGK 246 (707)
Q Consensus 168 ~le~el~~~~~eL~~~e~el~~-~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l 246 (707)
..++-+.+.+.+-+....+..- .+.++..+..+.+ +++.....++...++++...+..++.....++..+.++...
T Consensus 34 ~a~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~e---~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~ 110 (508)
T PRK12705 34 EAERILQEAQKEAEEKLEAALLEAKELLLRERNQQR---QEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEER 110 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005229 247 KEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVKE 326 (707)
Q Consensus 247 ~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E 326 (707)
++.+......+... .......++.-...........- +..++.++..-...+-..-..-.....+
T Consensus 111 ~~~l~~~~~~~~~~------~~~~~~~Le~ia~lt~~eak~~l---------~~~~~~~~~~e~~~~i~~~e~~~~~~a~ 175 (508)
T PRK12705 111 EKALSARELELEEL------EKQLDNELYRVAGLTPEQARKLL---------LKLLDAELEEEKAQRVKKIEEEADLEAE 175 (508)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHhCCCHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHhhhhh-hhhhccCCCCCccc----CCchhHHHHHHhhhccchhhhhhhHHHHhhcCCchhhHHH
Q 005229 327 FELREKELDSIRKAVEDRSKN-LLLQVKIKDPENLT----SSGRYLQFLLNQHLQKHDSIFCKVFDTIKSARDPALLVLH 401 (707)
Q Consensus 327 ~e~~e~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~e~~~al~~a~dpa~lVLd 401 (707)
-..+.=-...++.+..+.-.- .....++++..|.- -+|++.+.|-...=-+..-= |-+..|+
T Consensus 176 ~~A~~ii~~aiqr~a~~~~~e~tvs~v~lp~demkGriIGreGrNir~~E~~tGvdliid------------dtp~~V~- 242 (508)
T PRK12705 176 RKAQNILAQAMQRIASETASDLSVSVVPIPSDAMKGRIIGREGRNIRAFEGLTGVDLIID------------DTPEAVV- 242 (508)
T ss_pred HHHHHHHHHHHHHhccchhhhheeeeeecCChHhhccccCccchhHHHHHHhhCCceEec------------CCccchh-
Q ss_pred hhhCCCCCCCCCCCcccchhhhHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHhhhhcccCcHHHHH-------HH
Q 005229 402 AMSGFYPPHSREGDLEFDVSIVRRSCILLLEQLSTVEPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLG-------FL 474 (707)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~r~~c~~lle~l~~~~~~~~~~v~~~A~~~A~~Wk~~~~~~~~~~l~a~~-------fl 474 (707)
+..|-| +-|..-.+-|+.|+..++-.+..+-+-+..+-..+-..+..-++..+.-+| .+
T Consensus 243 -ls~fdp-------------~rreia~~~l~~Li~dgri~p~rIeevv~~~~~~~~~~i~~~ge~a~~~lgi~~~~~~li 308 (508)
T PRK12705 243 -ISSFNP-------------IRREIARLTLEKLLADGRIHPARIEEYVQKANEEFKQKIYEIGEEVLEELGIFDLKPGLV 308 (508)
T ss_pred -hcccCc-------------cchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHH
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHhhhcchhhHHHhhhCCccchhhhHHHHhhcCCccc
Q 005229 475 HLLAAYRLAPAFDREELESLLCIVAQHRQTPKLRRTLGFADKVPGLQCSTTAEGRSAP 532 (707)
Q Consensus 475 ~~l~~fgi~~~f~~~el~~l~~~~~~~~~~~~l~~~lgl~~k~~~~i~~li~~g~~~~ 532 (707)
.+|+....-+.|+.+ -+-.++..-..+..|+..+|+....--...-|=.=|+.++
T Consensus 309 ~~Lg~L~~R~sygqn---vl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ie 363 (508)
T PRK12705 309 RLLGRLYFRTSYGQN---VLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSID 363 (508)
T ss_pred HHHHHHhhcccCCch---HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcch
No 386
>PRK00736 hypothetical protein; Provisional
Probab=56.42 E-value=81 Score=25.64 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005229 71 CYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKE 121 (707)
Q Consensus 71 ~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e 121 (707)
.+..+..++.++...+.-|++++..+..-.+.|..+++.+..+...++..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 387
>PRK04325 hypothetical protein; Provisional
Probab=56.39 E-value=87 Score=25.91 Aligned_cols=53 Identities=9% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005229 62 RLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENE 114 (707)
Q Consensus 62 ~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~ 114 (707)
+.++..|.+++.++.-.+.-|..|..-+.+...+|..++..+..+...+.+..
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 388
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=56.11 E-value=25 Score=25.97 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred ceEEEE--ecCCCC--cccccCCCCcHHHHHHHHHHHHHHc
Q 005229 649 KWAAEI--RDPKKA--ARIWLGTFDTAEAAALAYDEAALRF 685 (707)
Q Consensus 649 ~w~a~i--~~~~~~--~~~~lG~f~t~e~Aa~ayd~aa~~~ 685 (707)
+|...| +++..| ++++-+.|.|..||-.+...+-..+
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~ 41 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL 41 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
No 389
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=55.73 E-value=4e+02 Score=31.26 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHH-HHHHHHHhhhhHHHH
Q 005229 88 SIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKEL-ELTQS-SIKELSMEFHSEEEK 165 (707)
Q Consensus 88 ~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~El-e~~e~-~i~~l~~ele~~e~~ 165 (707)
+.+.++..+..+..++.+++.++... +.....++...-.....+..+...+..++ +..+. .=+.+..++.....+
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~---I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e 84 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSM---INKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEE 84 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchh
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPG 245 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~ 245 (707)
+..+.+++.....-+.-++ .+..+...++.....+.. ..+-..-..+.+++..+.........--.-+..+..++..
T Consensus 85 ~~~L~~eL~~~~~~l~~L~-~L~~i~~~l~~~~~al~~--~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~ 161 (593)
T PF06248_consen 85 LQELKRELEENEQLLEVLE-QLQEIDELLEEVEEALKE--GNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSE 161 (593)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHH
Q ss_pred hHHhhhh
Q 005229 246 KKEELIS 252 (707)
Q Consensus 246 l~~Ele~ 252 (707)
++..+..
T Consensus 162 lr~~L~~ 168 (593)
T PF06248_consen 162 LRENLQY 168 (593)
T ss_pred HHHHHHH
No 390
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=55.71 E-value=2.3e+02 Score=31.35 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005229 83 GEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSE 162 (707)
Q Consensus 83 ~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~ 162 (707)
......+.-++.++..+...|..+.+.+-=+-.-+.-+..++...+.+|...-.+......++...+.........|...
T Consensus 468 ~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~ 547 (583)
T KOG3809|consen 468 SDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNI 547 (583)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 163 EEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKY 197 (707)
Q Consensus 163 e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el 197 (707)
+..++..|...+..|...+..+-..+.+|..+
T Consensus 548 ---la~lq~~I~d~~e~i~~~r~~IL~Ne~rIqk~ 579 (583)
T KOG3809|consen 548 ---LANLQKEINDTKEEISKARGRILNNEKRIQKF 579 (583)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 391
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=55.50 E-value=3.7e+02 Score=30.76 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005229 90 EEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELL 169 (707)
Q Consensus 90 ~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~l 169 (707)
.....-.....+-+...+..++-.+.+-..-....+..+.+.+..+.++...+.+.+..+..++.-+.+.+....+....
T Consensus 181 ~vv~~l~~~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~~ 260 (489)
T PF05262_consen 181 KVVQELREDKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKKL 260 (489)
T ss_pred HHHHHHhhccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHH
Q 005229 170 QGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY-IEELNQDPASKDKELRFVQQSIEECSKEIPGKKE 248 (707)
Q Consensus 170 e~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~e-i~~l~~eie~~~~el~~~~~~le~l~~El~~l~~ 248 (707)
.+.-.....+...... +...++++..+.++....++....... ...+..+ ....-....+...+.+.+.....+
T Consensus 261 pe~ae~~~~~edek~a--E~~kkE~EKaq~E~~k~~Eea~kake~~aee~k~E---ak~~~~~ae~K~~Eaq~er~~iAk 335 (489)
T PF05262_consen 261 PEPAEAQQKKEDEKLA--EEEKKEAEKAQEEAKKKQEEAKKAKEQAAEELKQE---AKSQEKEAEKKEEEAQQERKEIAK 335 (489)
T ss_pred cchhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh---hhhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhHHHHHHHHHH
Q 005229 249 ELISKGKTIAECSKEVEL 266 (707)
Q Consensus 249 Ele~l~~~l~e~~~~le~ 266 (707)
..+.+..+........++
T Consensus 336 D~qk~~~e~~~e~~~~~e 353 (489)
T PF05262_consen 336 DQQKLIEEQKAEKKKKEE 353 (489)
T ss_pred HHHHHHhhhhhhhhhhhh
No 392
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=55.41 E-value=1.9e+02 Score=32.04 Aligned_cols=156 Identities=11% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005229 88 SIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLE 167 (707)
Q Consensus 88 ~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~ 167 (707)
++.+...++-..+.++...-..+..+-...+.+++.-...+-.-.....-.....+++..++..|+.|....--+-.-++
T Consensus 424 d~~e~~~d~~~ee~~ldaqG~LVqkIlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D 503 (583)
T KOG3809|consen 424 DRTERIEDLVDEEDRLDAQGALVQKILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFD 503 (583)
T ss_pred chhhhcccchhhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhc
Q 005229 168 LLQGKVRLHENEVESLEQKLDS----MRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEI 243 (707)
Q Consensus 168 ~le~el~~~~~eL~~~e~el~~----~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El 243 (707)
-+.+.++..+.+|.....+... ++.+..-.....+-+...+.+++..|......|...+..+-..++++..+....
T Consensus 504 ~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~rIqk~i~~~ 583 (583)
T KOG3809|consen 504 FINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGRILNNEKRIQKFISNV 583 (583)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
No 393
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=55.34 E-value=1.8e+02 Score=31.64 Aligned_cols=77 Identities=19% Similarity=0.131 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHHH
Q 005229 47 AQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ--------LAFKESKISSMQTLIEENEGLLK 118 (707)
Q Consensus 47 ~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e--------l~ele~ei~~l~~~i~e~~~~l~ 118 (707)
+......+..+......+..+-+.+..+...+.++++.+-..-.+++.+ |.+++.+|..+++.+......-+
T Consensus 132 ~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 132 FDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Q ss_pred HHHHH
Q 005229 119 DKEKL 123 (707)
Q Consensus 119 ~~e~e 123 (707)
.....
T Consensus 212 ~~~~~ 216 (342)
T PF06632_consen 212 SPKQE 216 (342)
T ss_dssp HHH--
T ss_pred chhhh
No 394
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.05 E-value=5.4e+02 Score=32.55 Aligned_cols=318 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 5 RVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGE 84 (707)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~ 84 (707)
.+........++.+++..+++.++.++ ..-.....-....+...+..+......+......+.....- -..+..
T Consensus 177 ~y~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 250 (1042)
T TIGR00618 177 QYTQLALMEFAKKKSLHGKAELLTLRS-----QLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAY-LTQKRE 250 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005229 85 AQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEE 164 (707)
Q Consensus 85 le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~ 164 (707)
+...+..+...+......+..+...+..+........... ....+............++......+......+...-.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1042)
T TIGR00618 251 AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRAR--KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLM 328 (1042)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhh
Q 005229 165 KLELLQGKVRLHENEVESLEQKLDS--MRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKE 242 (707)
Q Consensus 165 ~l~~le~el~~~~~eL~~~e~el~~--~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~E 242 (707)
++..+......+...+...+.-+.. -...+..........-.........+......+......+....+.+..+...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 408 (1042)
T TIGR00618 329 KRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQRE 408 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 243 IPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLK-ELKEKETHFDSLKKGLEDRLQDLELKEREFE 321 (707)
Q Consensus 243 l~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~-~~~el~~~~~~le~~L~~~~~eL~~~e~~~~ 321 (707)
.......+.. +......+......... ...+..+......... ....+...+..+...+......++.++..+.
T Consensus 409 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 483 (1042)
T TIGR00618 409 QATIDTRTSA----FRDLQGQLAHAKKQQEL-QQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHL 483 (1042)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHhHHHHH
Q 005229 322 KRVKEFELREKELD 335 (707)
Q Consensus 322 ~~~~E~e~~e~~l~ 335 (707)
...........+..
T Consensus 484 ~~~~~~~~~~~r~~ 497 (1042)
T TIGR00618 484 QETRKKAVVLARLL 497 (1042)
T ss_pred HHHHHHHHHHHHHh
No 395
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=55.04 E-value=2.4e+02 Score=28.52 Aligned_cols=113 Identities=11% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hH
Q 005229 61 LRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ-----LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKN----SL 131 (707)
Q Consensus 61 l~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e-----l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~----el 131 (707)
+...+..++.....+.-...++..|+ =+..+... ...++..+..+++.+..+..++.......+..|. +|
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLe-Ll~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L 177 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLE-LLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEEL 177 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005229 132 MLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVR 174 (707)
Q Consensus 132 e~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~ 174 (707)
..++.+-.......-.++..+..++.++..++.+....+.+.+
T Consensus 178 ~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 178 RYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 396
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=54.96 E-value=1.8e+02 Score=27.09 Aligned_cols=77 Identities=12% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHH
Q 005229 151 SIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDK 227 (707)
Q Consensus 151 ~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~ 227 (707)
+...+...++.....+...+..+....+.|..+.......+.....+...+..........+..|..+.++-+.++.
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 397
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=54.93 E-value=68 Score=38.91 Aligned_cols=228 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 005229 81 KVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCET-KLECEKKELELTQSSIKELSMEF 159 (707)
Q Consensus 81 ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~-el~~~~~Ele~~e~~i~~l~~el 159 (707)
++.++..++..+.......-++.+++.+.+..++.++................... .+.+++.+++..+..+.++....
T Consensus 11 qF~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~~~~ 90 (759)
T PF01496_consen 11 QFRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELEEELRELNENL 90 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH--
Q 005229 160 HSEEEKLELLQGKVRLHENEVESLEQK-------LDSMRKQQKKYF----------------DDVELKKRELNEIRKY-- 214 (707)
Q Consensus 160 e~~e~~l~~le~el~~~~~eL~~~e~e-------l~~~~~ei~el~----------------~ele~k~~e~~e~~~e-- 214 (707)
+.+..++..+.+....++.....+... ...++...+.+. ...+..++.+......
T Consensus 91 e~L~~~~~~L~E~~~~L~~~~~~l~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~N~ 170 (759)
T PF01496_consen 91 EKLEEELNELEEEKNVLEEEIEFLEELKLEELEPWKNLDIDLEELESSKFLNLGFIAGVIPREKIESFERILWRATRGNI 170 (759)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhhccccceeeeEEEEEEehhhHHHHHHHHHHhccCCe
Q ss_pred ------HHHHhcChh------------hHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 005229 215 ------IEELNQDPA------------SKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQD 276 (707)
Q Consensus 215 ------i~~l~~eie------------~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~ 276 (707)
+.....+-. ......+...+-.+..--..-.+...-..-.+.+.+..+++++++.+++.++.
T Consensus 171 fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~ 250 (759)
T PF01496_consen 171 FIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEE 250 (759)
T ss_dssp ---S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005229 277 KSSLFQTRTIVYLKELKEKETHFDSLKKGLED 308 (707)
Q Consensus 277 ~le~le~~~~~~~~~~~el~~~~~~le~~L~~ 308 (707)
++..+..+....-..|...-.....+...+..
T Consensus 251 ~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 282 (759)
T PF01496_consen 251 ELKKLLEKYAEELEAWYEYLRKEKEIYEALNK 282 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 398
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.90 E-value=2.3e+02 Score=28.21 Aligned_cols=168 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhh
Q 005229 173 VRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELIS 252 (707)
Q Consensus 173 l~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~ 252 (707)
+..+...+.....+++.-.+.+.+...-.+++-..+...+-.+.+...-++-...+.+.+.+.-.++...+.+..+.++.
T Consensus 35 v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~ 114 (222)
T KOG3215|consen 35 VEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLKTQRVIEMNLREIENLVQKKLEIERSIQKARNKIEL 114 (222)
T ss_pred HHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH
Q 005229 253 KGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVKEFELREK 332 (707)
Q Consensus 253 l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~ 332 (707)
++++|.+. +.+..-+.+.+.+..-++..-.+ .+=...+..+.+.|++....-.+.+..++.+.+++...--
T Consensus 115 lkkql~ea-Ki~r~nrqe~~~l~kvis~~p~R--------sEt~k~l~el~keleel~~~~~s~~~klelrRkqf~~lm~ 185 (222)
T KOG3215|consen 115 LKKQLHEA-KIVRLNRQEYSALSKVISDCPAR--------SETDKDLNELKKELEELDDLNNSTETKLELRRKQFKYLMV 185 (222)
T ss_pred HHHHHHHH-HHHHHhHHHHHHHHHHHhcCCCc--------chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHh
Q ss_pred HHHHHHHHHHhhhhhhh
Q 005229 333 ELDSIRKAVEDRSKNLL 349 (707)
Q Consensus 333 ~l~~~~~~~~~~~~~~~ 349 (707)
-+++++...+.-+..+.
T Consensus 186 ~~~elQ~amedeedt~v 202 (222)
T KOG3215|consen 186 STEELQCAMEDEEDTVV 202 (222)
T ss_pred hHHHHHhhhhhhhhhHH
No 399
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.89 E-value=21 Score=43.59 Aligned_cols=163 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchh
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPG 245 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~ 245 (707)
+..+..+|.........+...-.....+.+++...+...+..+...+.+.......+....+.+..+...+.....++..
T Consensus 430 ~~~~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~ 509 (847)
T KOG0998|consen 430 VLELANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISS 509 (847)
T ss_pred cccchhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHH
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 246 KKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVK 325 (707)
Q Consensus 246 l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~ 325 (707)
+..++..+..+...+...+...+.+++.+...+..+...+.........+..+|.......+......+....+....+.
T Consensus 510 ~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~n~~~~~s~~ 589 (847)
T KOG0998|consen 510 LEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLKGSKLVNGKDQNSST 589 (847)
T ss_pred HHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhhhhhccccccccchh
Q ss_pred hHH
Q 005229 326 EFE 328 (707)
Q Consensus 326 E~e 328 (707)
++.
T Consensus 590 ~l~ 592 (847)
T KOG0998|consen 590 ELA 592 (847)
T ss_pred hhh
No 400
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=54.83 E-value=3.1e+02 Score=29.79 Aligned_cols=165 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----
Q 005229 46 SAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDK----- 120 (707)
Q Consensus 46 ~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~----- 120 (707)
.+.....+.......+.+.....+...++-.....++...+--+.-|...+.--+.++.......+.........
T Consensus 133 ~~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg 212 (464)
T KOG4637|consen 133 NINAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQG 212 (464)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCC
Q ss_pred --HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 121 --EKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYF 198 (707)
Q Consensus 121 --e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~ 198 (707)
+.++......-+.+++.|.++...+-.++..++.+ +.-+....+....++.++.+.+..+.-.+..++...+..-
T Consensus 213 ~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~---~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~~~d~y~ 289 (464)
T KOG4637|consen 213 NSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKAL---IQALRSNSENRLCELMELDKAMNSLKPDLIQLRKIRDQYL 289 (464)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 005229 199 DDVELKKRELNEIRK 213 (707)
Q Consensus 199 ~ele~k~~e~~e~~~ 213 (707)
.-+..+...-..++.
T Consensus 290 ~~l~~~~~~~k~l~~ 304 (464)
T KOG4637|consen 290 VWLMIKGVRQKVLNL 304 (464)
T ss_pred HHHHhcCccHHHHHH
No 401
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=54.77 E-value=1.5e+02 Score=26.17 Aligned_cols=99 Identities=16% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 005229 139 ECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDS-MRKQQKKYFDDVELKKRE-LNEIRKYIE 216 (707)
Q Consensus 139 ~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~-~~~ei~el~~ele~k~~e-~~e~~~ei~ 216 (707)
..+...+..+...+..+..-+..++.....++........+|...-..+-. ++.+-+.+-..++..... ...+...+.
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~ 82 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLE 82 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcChhhHHHhHHHHHHHHH
Q 005229 217 ELNQDPASKDKELRFVQQSIE 237 (707)
Q Consensus 217 ~l~~eie~~~~el~~~~~~le 237 (707)
.++..+..+..-+...+..+.
T Consensus 83 ~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 83 SLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 402
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=54.54 E-value=29 Score=30.51 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHH
Q 005229 157 MEFHSEEEKLELLQGKVRLHENEVESLEQKL-DSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQS 235 (707)
Q Consensus 157 ~ele~~e~~l~~le~el~~~~~eL~~~e~el-~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~ 235 (707)
.++.........++.....++.+|+++...| ++.++-+..-..+....+.+...+...+......++.++.++..++.-
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhh
Q 005229 236 IEECSKE 242 (707)
Q Consensus 236 le~l~~E 242 (707)
+..+..+
T Consensus 81 ~~~~~~~ 87 (100)
T PF06428_consen 81 MESMESE 87 (100)
T ss_dssp TTT----
T ss_pred HHHcccc
No 403
>PRK02793 phi X174 lysis protein; Provisional
Probab=54.50 E-value=94 Score=25.56 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKE 100 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele 100 (707)
+..++..++..+.-.+..|+++..-+-..+++|..+++.+..+...+....
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 404
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=54.40 E-value=76 Score=25.88 Aligned_cols=51 Identities=10% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005229 61 LRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIE 111 (707)
Q Consensus 61 l~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~ 111 (707)
+.++.+.+.+.+.+++...+++..++........++..+...|+.+.....
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 405
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=54.28 E-value=54 Score=40.52 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCcccc-----cccCCCCcchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCcccccc
Q 005229 540 APLNQSVSSPMNLPQCSGMDPNSSTSSLV-----SQYSGAQPQLENQYKRLRRESPSTIAYTPQTPASDNLSRSSLATQY 614 (707)
Q Consensus 540 ~~l~~~~~p~~~~~s~~~~~~~s~~s~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (707)
.+.-.+|+|.++..+ ..||+.+++++. |.++...|- .+|+++.++|..|+-++.+++-. .
T Consensus 1516 sptspsysptspsys--ptspsysptspsysptspsysptsps----------ysptsp~ysptspsysptspsys---~ 1580 (1605)
T KOG0260|consen 1516 SPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPS----------YSPTSPSYSPTSPSYSPTSPSYS---T 1580 (1605)
T ss_pred CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCcc---C
Q ss_pred CCCccCCCCCcccccccCCCCCccc
Q 005229 615 GPGVAHIGGQTQFGLLAGNVSRMHF 639 (707)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~s~~ 639 (707)
.|+-.+.+..-+.....-++.++.|
T Consensus 1581 ~~~ysp~sp~ysptsp~ysp~spsy 1605 (1605)
T KOG0260|consen 1581 SPSYSPTSPSYSPTSPSYSPTSPSY 1605 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
No 406
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=53.89 E-value=2e+02 Score=27.19 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 76 ELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKEL 155 (707)
Q Consensus 76 ~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l 155 (707)
..+.+.-....++|++++..|.+..+.-......+..+...+...+........-......+++..- +.-.+..+...
T Consensus 25 ~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~--~~~~e~~i~~~ 102 (146)
T PF08702_consen 25 DFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI--IYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH--HHHHHHHHhhh
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 156 SMEFHSEEEKLELLQGKVRLHENEVESLEQ 185 (707)
Q Consensus 156 ~~ele~~e~~l~~le~el~~~~~eL~~~e~ 185 (707)
...+..+...+.....++..++..+..+..
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 407
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.30 E-value=4.1e+02 Score=30.67 Aligned_cols=215 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 005229 127 VKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDS--MRKQQKKYFDDVELK 204 (707)
Q Consensus 127 l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~--~~~ei~el~~ele~k 204 (707)
.+..|+.++.+++.++..++..+..-+-+-..+.+++ -...+.-......++.+....++. -.+..=.+..++...
T Consensus 330 ~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~--~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~ 407 (852)
T KOG4787|consen 330 AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELE--ADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERK 407 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhH--------HhhhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 005229 205 KRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKK--------EELISKGKTIAECSKEVELKKNQLNLIQD 276 (707)
Q Consensus 205 ~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~--------~Ele~l~~~l~e~~~~le~k~~ele~l~~ 276 (707)
.-+..++..+++....=-..+...-....+++-.++.+..+++ ..+.++..++....+.-..+.-.+....+
T Consensus 408 ~~~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R 487 (852)
T KOG4787|consen 408 NLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHR 487 (852)
T ss_pred cccHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHH
Q ss_pred hhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHh
Q 005229 277 KSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVKEFELREKELDSIRKAVED 343 (707)
Q Consensus 277 ~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~~~~~~~~~ 343 (707)
....-.+--......++.|+.+...=+.---.+..+++.+++.......+.+++-+....--.+...
T Consensus 488 ~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~~~t~~l~Kq 554 (852)
T KOG4787|consen 488 KQVRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAVETQTGRLCKQ 554 (852)
T ss_pred HHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHhhhHHHHHHH
No 408
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=53.10 E-value=3.1e+02 Score=29.27 Aligned_cols=123 Identities=9% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHH
Q 005229 63 LWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYD---EVKNSLMLCETKLE 139 (707)
Q Consensus 63 ~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~---~l~~ele~le~el~ 139 (707)
.+...+...+..+..++.++..+..... ..++...+..+...+..++..+..++..+.-+. .-+.+++..+.++.
T Consensus 78 ~~~~~l~~~~a~l~~~~~~l~~~~~~~~--~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~ 155 (331)
T PRK03598 78 PYENALMQAKANVSVAQAQLDLMLAGYR--DEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRD 155 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 140 CEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDS 189 (707)
Q Consensus 140 ~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~ 189 (707)
.....+...+..+..+.......+ +...+..+...+..+...+..++.
T Consensus 156 ~a~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~a~~~l~~ 203 (331)
T PRK03598 156 QAQATLKSAQDKLSQYREGNRPQD--IAQAKASLAQAQAALAQAELNLQD 203 (331)
T ss_pred HHHHHHHHHHHHHHHHHccCCHHH--HHHHHHHHHHHHHHHHHHHHHHhc
No 409
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.07 E-value=32 Score=42.11 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005229 96 LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRL 175 (707)
Q Consensus 96 l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~ 175 (707)
...+...|.........+...-.........+...+...+......+.+....-..+..+...+..+...+.....++..
T Consensus 430 ~~~~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~ 509 (847)
T KOG0998|consen 430 VLELANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISS 509 (847)
T ss_pred cccchhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhh
Q 005229 176 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGK 255 (707)
Q Consensus 176 ~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~ 255 (707)
+.++|.++..+...+...+......++.+.+++..+..++.....+...++..+......++.+....+....+.+.-..
T Consensus 510 ~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~n~~~~~s~~ 589 (847)
T KOG0998|consen 510 LEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLKGSKLVNGKDQNSST 589 (847)
T ss_pred HHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhhhhhccccccccchh
Q ss_pred hHHHH
Q 005229 256 TIAEC 260 (707)
Q Consensus 256 ~l~e~ 260 (707)
++...
T Consensus 590 ~l~~~ 594 (847)
T KOG0998|consen 590 ELAGY 594 (847)
T ss_pred hhhhh
No 410
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=52.57 E-value=1.9e+02 Score=32.42 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 005229 23 ELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ----LAF 98 (707)
Q Consensus 23 eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e----l~e 98 (707)
+++....+....+..+...-... ...-+++..+..+..++..+++.++.+...+.++|...... ..+
T Consensus 3 Dik~ir~n~~~v~~~l~~R~~~~---------~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~ 73 (418)
T TIGR00414 3 DRKLLRNNPDLVKESLKARGLSV---------DIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEE 73 (418)
T ss_pred CHHHHHhCHHHHHHHHHhcCCCh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005229 99 KESKISSMQTLIEENEGLLKDKEKLYDEVKNSL 131 (707)
Q Consensus 99 le~ei~~l~~~i~e~~~~l~~~e~e~~~l~~el 131 (707)
+..+...++.+|.+++..+..++.++...-..+
T Consensus 74 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 74 IKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 411
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=52.52 E-value=3.7e+02 Score=29.92 Aligned_cols=148 Identities=9% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVG-EAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLML 133 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~-~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~ 133 (707)
......+......+..+..++..+...+. ........+......++..+..++..+..+...+...+..++.....+..
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 171 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKR 171 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q ss_pred HHHHHHHHH------HHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 134 CETKLECEK------KELELTQSSI-KELSMEFHSEEEKLELLQGKVRLHE----NEVESLEQKLDSMRKQQKKYFDDVE 202 (707)
Q Consensus 134 le~el~~~~------~Ele~~e~~i-~~l~~ele~~e~~l~~le~el~~~~----~eL~~~e~el~~~~~ei~el~~ele 202 (707)
...-..... .+.+..+... ...+..+..+......+......+. .++...+.++.....++......+.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 172 DRILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 412
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=52.40 E-value=2.6e+02 Score=28.11 Aligned_cols=236 Identities=8% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKN 129 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ 129 (707)
...-...+......+...+.+...........+..+...+.++...+.............+................+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T smart00283 2 VSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVS 81 (262)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 130 SLMLCETKLECEKKELELTQSSIKEL------------------------SMEFHSEEEKLELLQGKVRLHENEVESLEQ 185 (707)
Q Consensus 130 ele~le~el~~~~~Ele~~e~~i~~l------------------------~~ele~~e~~l~~le~el~~~~~eL~~~e~ 185 (707)
.+..+......+..-...+....... -.++..+ .........++.+-+.....
T Consensus 82 ~i~~i~~~~~~i~~~~~~i~~~a~~~~~la~na~ieA~~ag~~g~~~~~va~~I~~l---a~~t~~~~~ev~~~~~~~~~ 158 (262)
T smart00283 82 AVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKL---AERSAESAKEIESLIKEIQE 158 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHH
Q 005229 186 KLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVE 265 (707)
Q Consensus 186 el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le 265 (707)
........+......+.............+..+..-+......+..+....+.+...........+.+...+.+...-.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~ 238 (262)
T smart00283 159 ETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSE 238 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHhhhhhhhHHHHH
Q 005229 266 LKKNQLNLIQDKSSLFQTRTIVY 288 (707)
Q Consensus 266 ~k~~ele~l~~~le~le~~~~~~ 288 (707)
......+.+......|......|
T Consensus 239 ~~~~~~~~l~~~~~~l~~~~~~~ 261 (262)
T smart00283 239 EISAAAEELSGLAEELKELVEQF 261 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
No 413
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=52.38 E-value=3.5e+02 Score=29.56 Aligned_cols=253 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSI--------EEQEKQLAFKESKISS-MQTLIEENEGLLKDKEKLYD 125 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i--------~e~~~el~ele~ei~~-l~~~i~e~~~~l~~~e~e~~ 125 (707)
+.+++++..+..+++-...+.+..+..+..++... ..+..-+..++.--.. +...-..+..++..+..+..
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKd 373 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKD 373 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 126 EVKNS-----LMLCETKLECEKKELELTQSSIKELSMEFHSEE----EKLELLQGKVRLHENEVESLEQKLDSMRKQQKK 196 (707)
Q Consensus 126 ~l~~e-----le~le~el~~~~~Ele~~e~~i~~l~~ele~~e----~~l~~le~el~~~~~eL~~~e~el~~~~~ei~e 196 (707)
-+-.+ +..++.=.....++++.--.+-..+....+.+. +.+.+.+.++..+..+...+=-+..-+-..++.
T Consensus 374 rLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEa 453 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEA 453 (593)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChh---------------------hHHHhHHHHHHHHHHHhhhchhhHHhhhhhhh
Q 005229 197 YFDDVELKKRELNEIRKYIEELNQDPA---------------------SKDKELRFVQQSIEECSKEIPGKKEELISKGK 255 (707)
Q Consensus 197 l~~ele~k~~e~~e~~~ei~~l~~eie---------------------~~~~el~~~~~~le~l~~El~~l~~Ele~l~~ 255 (707)
-...+...+.+..++..--+++.+.+. ...+.--.++.-+.-.+.++.=+++|+.+++.
T Consensus 454 erqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkD 533 (593)
T KOG4807|consen 454 ERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKD 533 (593)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005229 256 TIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRL 310 (707)
Q Consensus 256 ~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~ 310 (707)
++....+...=....+..+.-++...+.+ -.-.+..|.+|+..-...|.++.
T Consensus 534 ELQtalrDKkyaSdKYkDiYtELSiaKak---adcdIsrLKEqLkaAteALgEKs 585 (593)
T KOG4807|consen 534 ELQTALRDKKYASDKYKDIYTELSIAKAK---ADCDISRLKEQLKAATEALGEKS 585 (593)
T ss_pred HHHHHHhhhhccccchhHHHHHHHHHHHh---hhccHHHHHHHHHHHHHHhcccC
No 414
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=52.29 E-value=2.8e+02 Score=28.50 Aligned_cols=217 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005229 53 KCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLM 132 (707)
Q Consensus 53 ~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele 132 (707)
++...-+.|+.....|+.++.++.........+..+...--..+..+=+.-=...+=.-+........+.+.+..-..-+
T Consensus 8 rVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~ye 87 (239)
T PF05276_consen 8 RVQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYE 87 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 133 LCETKLECEKKELELTQSSIKELS--MEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNE 210 (707)
Q Consensus 133 ~le~el~~~~~Ele~~e~~i~~l~--~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e 210 (707)
....-+...++.+...++.+..-. .---...+.+...-..+.+.+.+-...+..-...-.........+..+++.+.-
T Consensus 88 rA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr 167 (239)
T PF05276_consen 88 RANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKR 167 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHH
Q 005229 211 IRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKN 269 (707)
Q Consensus 211 ~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ 269 (707)
...+-.=.=..-..+...++.....+..|+..+...+..-..--..|+.+..+|-..+.
T Consensus 168 ~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~R~ 226 (239)
T PF05276_consen 168 AIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQRR 226 (239)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 415
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=52.15 E-value=2.6e+02 Score=28.00 Aligned_cols=180 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005229 86 QRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLY-DEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEE 164 (707)
Q Consensus 86 e~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~-~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~ 164 (707)
...+-..-......++-+...++.|..++.....+-..+ +.-......+....+.+..-++..+..++....-++..+.
T Consensus 17 ~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~ 96 (204)
T PF10368_consen 17 EEQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKE 96 (204)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhch
Q 005229 165 KLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIP 244 (707)
Q Consensus 165 ~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~ 244 (707)
++..+...+..+.++ ..+.+...+..-++........+-......-..=..+=..+......+..+...++.+-.-..
T Consensus 97 e~~~~~~~i~ki~d~--~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~ 174 (204)
T PF10368_consen 97 EFKKAKKYIDKIEDE--KLKKQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYK 174 (204)
T ss_dssp HHTT----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHH
Q 005229 245 GKKEELISKGKTIAECSKEVELK 267 (707)
Q Consensus 245 ~l~~Ele~l~~~l~e~~~~le~k 267 (707)
...+..+.+.+......+.-...
T Consensus 175 ~~~~~~~~fn~~t~~yN~~K~~~ 197 (204)
T PF10368_consen 175 EVNKQKEKFNEYTKKYNEEKQDF 197 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 416
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=52.08 E-value=1e+02 Score=24.88 Aligned_cols=63 Identities=6% Similarity=0.050 Sum_probs=0.0
Q ss_pred ChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhh
Q 005229 221 DPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQT 283 (707)
Q Consensus 221 eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~ 283 (707)
++..+...++.+-...+++..++..+..+......+-..+..+.+..+..++.+-..+..|+.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
No 417
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=52.00 E-value=3.2e+02 Score=29.06 Aligned_cols=120 Identities=10% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----------HHHHHHHHHH
Q 005229 104 SSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEE----------EKLELLQGKV 173 (707)
Q Consensus 104 ~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e----------~~l~~le~el 173 (707)
..+...+...+..+...+..+..++..+..++.++...+..++..+..+...+.+++..+ .+++..+..+
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~ 155 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKAL 155 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 005229 174 RLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASK 225 (707)
Q Consensus 174 ~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~ 225 (707)
...+.++...+.+.......+ .....-..+..+...+..+...+..+...
T Consensus 156 ~~a~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~l~~a~~~l~~~ 205 (334)
T TIGR00998 156 LSAKAALNAAIQEQLNANQAL--VRGTPLKKQPAVQEAKERLKTAWLALKRT 205 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hhhhhhhhhHHHHHHHHHHHHHHHHhhCc
No 418
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=51.71 E-value=1.1e+02 Score=23.82 Aligned_cols=54 Identities=15% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 164 EKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEE 217 (707)
Q Consensus 164 ~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~ 217 (707)
.+++.+...+..+..++..+..++..+..++.....+-.....++.++-..+.+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~K 56 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSYKK 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
No 419
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=51.65 E-value=8.1e+02 Score=33.63 Aligned_cols=333 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCC-----------CchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 3 SWRVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKP-----------SSAQEWINKCQAYQKELRLWKNLIEEC 71 (707)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~-----------l~~~l~~~~~~~~~~el~~l~~~i~e~ 71 (707)
.......++.....+.+...-+..-..+++...+.+.+..+- .+|..+......+.+.|..-...+...
T Consensus 878 ~e~s~~kLn~yE~eFnd~ks~V~~t~k~IE~~~KnIdtlK~LN~~In~c~~~kesI~~~~nkk~~LkekL~k~I~~I~~~ 957 (2757)
T TIGR01612 878 AEISDDKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKNIDTIKES 957 (2757)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005229 72 Y-DEVELREKKVGEAQRSIEEQEKQ-----LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKEL 145 (707)
Q Consensus 72 ~-~e~~~~~~ei~~le~~i~e~~~e-----l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~El 145 (707)
. -+......=+..|...+.++... |..++.....+-+-.....+.+..-.... +-.+++..+.....+..++
T Consensus 958 ~~Iek~~t~~ll~~L~dkk~~i~~~l~e~sLNdletk~~~Ll~Yf~~~K~nl~~~~e~~--~~~qlde~ek~~~dIk~ki 1035 (2757)
T TIGR01612 958 NLIEKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKNNELIKYFNDLKANLGKNKENM--LYHQFDEKEKATNDIEQKI 1035 (2757)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHhhHHHHHHHHHHHHHhcCCCcccc--hHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH
Q 005229 146 ELTQSSIKELSMEF-----HSEEEKLELLQGKVRLHENEVESLE------------------------QKLDSMRKQQKK 196 (707)
Q Consensus 146 e~~e~~i~~l~~el-----e~~e~~l~~le~el~~~~~eL~~~e------------------------~el~~~~~ei~e 196 (707)
..+...+..+...+ ...++-+..+...+..+..++.+.- .+--....++..
T Consensus 1036 ~~lN~Ny~nie~~i~~sI~n~~eei~~~i~k~I~~~~~eI~ekv~~ni~~LneIK~KL~~~~~~D~~K~~N~k~~~eI~k 1115 (2757)
T TIGR01612 1036 EDANKNIPNIEIAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIKEKLKHYNFDDFGKEENIKYADEINK 1115 (2757)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhHHHHHHHHhcccHhhhhhhhccccHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 005229 197 YFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQD 276 (707)
Q Consensus 197 l~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~ 276 (707)
+...+..+...+...-.++..+...=+..-.++......++..... ........++++.+.-....++.++.-++.+..
T Consensus 1116 ik~~i~~l~~~ID~~i~kl~~ikkks~~~~~e~~~~~~~~ek~~~k-t~~n~~~k~Iek~~~~~~~ki~~~k~IYe~m~k 1194 (2757)
T TIGR01612 1116 IKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADK-AISNDDPEEIEKKIENIVTKIDKKKNIYDEIKK 1194 (2757)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcchhhhhcch-hhcccCHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q ss_pred hhhhhhhHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHH
Q 005229 277 KSSLFQTRTIVYLKELKEKET-HFDSLKKGLEDRLQDLELKEREFEKRVKEFELREKELDSIRK 339 (707)
Q Consensus 277 ~le~le~~~~~~~~~~~el~~-~~~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~~~~~ 339 (707)
-+.++.. +.....-.++... .++--..-+....+.+......-...+++.+...+.+|....
T Consensus 1195 l~~El~e-ie~~k~s~e~V~~i~l~Y~r~li~~fl~~I~eEk~Ka~~~ie~ie~y~~~iD~Ikk 1257 (2757)
T TIGR01612 1195 LLNEIAE-IEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKE 1257 (2757)
T ss_pred HHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 420
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=51.51 E-value=83 Score=26.84 Aligned_cols=60 Identities=15% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 134 CETKLECEKKELELTQSSIKELSMEFHSEE---EKLELLQGKVRLHENEVESLEQKLDSMRKQ 193 (707)
Q Consensus 134 le~el~~~~~Ele~~e~~i~~l~~ele~~e---~~l~~le~el~~~~~eL~~~e~el~~~~~e 193 (707)
.-.+|+...+.+..-...++.+...+..-+ +....++.++..+.+.+...++++..+.++
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
No 421
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=51.40 E-value=4.2e+02 Score=30.19 Aligned_cols=166 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005229 59 KELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKL 138 (707)
Q Consensus 59 ~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el 138 (707)
............+..+......++..+.....++.....++............++...-...+.+.......+..++...
T Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~ 108 (475)
T PRK10361 29 QQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSE 108 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 139 ECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEEL 218 (707)
Q Consensus 139 ~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l 218 (707)
+.+..+.+.+-.+|=+-... .-.+..-..+..=|.=++..|...++++++....-..-...+.+.-..+.++
T Consensus 109 ~~L~~~F~~LA~~ile~k~~--------~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~ 180 (475)
T PRK10361 109 QRLSEQFENLANRIFEHSNR--------RVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQL 180 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcChhhHHHhHHHH
Q 005229 219 NQDPASKDKELRFV 232 (707)
Q Consensus 219 ~~eie~~~~el~~~ 232 (707)
..+|..--..+...
T Consensus 181 n~~i~~ea~nLt~A 194 (475)
T PRK10361 181 NAQMAQEAINLTRA 194 (475)
T ss_pred HHHHHHHHHHHHHH
No 422
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=51.34 E-value=2.4e+02 Score=27.42 Aligned_cols=103 Identities=10% Similarity=0.218 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 46 SAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYD 125 (707)
Q Consensus 46 ~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~ 125 (707)
++.-+...+-.++..++.++..+++..+.+..-...-..+..++...+.+|..++.++..+=..|+...+....+...++
T Consensus 73 DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~ 152 (189)
T TIGR02132 73 DIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHH
Q ss_pred -HHHHhHHHHHHHHHHHHHHHHHH
Q 005229 126 -EVKNSLMLCETKLECEKKELELT 148 (707)
Q Consensus 126 -~l~~ele~le~el~~~~~Ele~~ 148 (707)
.+.-.-+++...+-+.+..+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~ 176 (189)
T TIGR02132 153 KQIKTQGEQLQAQLLEKQEALAAK 176 (189)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
No 423
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.24 E-value=75 Score=32.39 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH
Q 005229 53 KCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESK-ISSMQTLIEENEGLLKDKEK 122 (707)
Q Consensus 53 ~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~e-i~~l~~~i~e~~~~l~~~e~ 122 (707)
.|..+++++..|+..+.+....+-+..++|..|..+ .+...+++.+-.+ +..+++.+++.-..+..+.+
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 424
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=51.23 E-value=1.9e+02 Score=26.09 Aligned_cols=88 Identities=16% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------hhHH----------
Q 005229 117 LKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEF-----------------------HSEE---------- 163 (707)
Q Consensus 117 l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~el-----------------------e~~e---------- 163 (707)
+..+...++.++.++..+...+..+...+...+..++.+..=- ...+
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 164 ------EKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELK 204 (707)
Q Consensus 164 ------~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k 204 (707)
+-...+++.++.++..++.+++.+..+..++..+...+..+
T Consensus 81 ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 81 VEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 425
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=51.14 E-value=1e+02 Score=32.20 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Q 005229 155 LSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPA 223 (707)
Q Consensus 155 l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie 223 (707)
.+..+..++..+......+.++..+|+.++.++..++..++++.-+++...++-.++-.++......++
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~~ 106 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGA 106 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 426
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.94 E-value=4.5e+02 Score=30.40 Aligned_cols=208 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 005229 57 YQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ-----LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKN-- 129 (707)
Q Consensus 57 ~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e-----l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~-- 129 (707)
++.++..++.++..+...+..+++.-.-|-+.|.++... ..+.-.++.+++...+.....-+.+---.+..++
T Consensus 330 ~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~ 409 (852)
T KOG4787|consen 330 AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNL 409 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcc
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 130 SLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHE-NEVESLEQKLDSMRKQQKKYFDDVELKKREL 208 (707)
Q Consensus 130 ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~-~eL~~~e~el~~~~~ei~el~~ele~k~~e~ 208 (707)
++..+-.+++....-....-..-.....++.....+..+++..+..-. ..+.+++.+|+...+...-+.-.+.....+-
T Consensus 410 ~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q 489 (852)
T KOG4787|consen 410 ELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQ 489 (852)
T ss_pred cHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHH
Q 005229 209 NEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEV 264 (707)
Q Consensus 209 ~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~l 264 (707)
...-.--......|..++.++.--++---.|.+|++++..-+..+......+.+..
T Consensus 490 ~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~ 545 (852)
T KOG4787|consen 490 VRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAVE 545 (852)
T ss_pred HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHh
No 427
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.53 E-value=76 Score=32.34 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Q 005229 151 SIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDD-VELKKRELNEIRKYIEELNQ 220 (707)
Q Consensus 151 ~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~e-le~k~~e~~e~~~ei~~l~~ 220 (707)
.|..++.++..++..|....+.|.+..++|.++..+ .+.+.+++....+ ++++.+++.+.-..+..+.+
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 428
>PTZ00121 MAEBL; Provisional
Probab=50.39 E-value=6.9e+02 Score=32.45 Aligned_cols=267 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q 005229 5 RVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLW----------KNLIEECYDE 74 (707)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l----------~~~i~e~~~e 74 (707)
++.+.-......-..-..++...+.....-..+.....+.+ ++.+-+++...-..+ +..+...+..
T Consensus 1538 EaKKaEE~kKAee~kKaee~kK~Ee~kk~eekr~aeE~k~~----a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~k 1613 (2084)
T PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNM----ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 75 VELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKE 154 (707)
Q Consensus 75 ~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~ 154 (707)
...-.+.-.+--+.-++-++.++++..+-++-++.++.....-+............-+.-....++....-+.....+..
T Consensus 1614 k~ee~~kk~E~~kk~eeekKk~Eelkk~eeE~kkk~Ea~kK~EEE~kkraeEeaKk~EEekKKaEe~kk~~ee~~k~~e~ 1693 (2084)
T PTZ00121 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHH
Q 005229 155 LSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQ 234 (707)
Q Consensus 155 l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~ 234 (707)
+... .+....+.++.+.-++.......+.+.-++.....+...++-.+-.....+..++-+....-......
T Consensus 1694 ~kk~--------~ee~k~~~~~~k~~~e~~~~~e~~kk~eee~k~k~ee~kkk~ee~kkk~e~~~k~eeek~ki~~~kke 1765 (2084)
T PTZ00121 1694 LKKE--------AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765 (2084)
T ss_pred HHhH--------HHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhH
Q 005229 235 SIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTR 284 (707)
Q Consensus 235 ~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~ 284 (707)
+.+.-+......+..|+. .-.-+.........+.-...+...-..+++.
T Consensus 1766 eekkae~~RKQQEAaLed-gLeaE~e~rs~aR~QqV~dEVdkY~AIIeqr 1814 (2084)
T PTZ00121 1766 EEKKAEEIRKEKEAVIEE-ELDEEDEKRRMEVDKKIKDIFDNFANIIEGG 1814 (2084)
T ss_pred hhhhHHHHHHHHHHHHHH-HhhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 429
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=50.31 E-value=1.5e+02 Score=24.86 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 105 SMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLE 184 (707)
Q Consensus 105 ~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e 184 (707)
.+...++.+..+......+.......-+.++.++.....|+...+..+-+++.. ...++..+ +.+|..++
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~-------h~kmK~~Y---EeEI~rLr 70 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQA-------HRKMKQQY---EEEIARLR 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHHH
Q ss_pred HHHHH
Q 005229 185 QKLDS 189 (707)
Q Consensus 185 ~el~~ 189 (707)
.+|+.
T Consensus 71 ~eLe~ 75 (79)
T PF08581_consen 71 RELEQ 75 (79)
T ss_dssp HHHCH
T ss_pred HHHHh
No 430
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=50.27 E-value=1.1e+02 Score=25.26 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHH
Q 005229 54 CQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQ-TLIEENEGLLKDKEKLYDEVKNSLM 132 (707)
Q Consensus 54 ~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~-~~i~e~~~~l~~~e~e~~~l~~ele 132 (707)
+..+..++...-..+..... ......|..++..+.+...-|.+++-++..+- ..-..+...+.....++..+..++.
T Consensus 1 f~~l~~~i~~~l~~~~~~~~--~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSG--EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred H
Q 005229 133 L 133 (707)
Q Consensus 133 ~ 133 (707)
.
T Consensus 79 ~ 79 (79)
T PF05008_consen 79 K 79 (79)
T ss_dssp H
T ss_pred C
No 431
>PLN02678 seryl-tRNA synthetase
Probab=50.18 E-value=1.2e+02 Score=34.13 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005229 59 KELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ---LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSL 131 (707)
Q Consensus 59 ~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e---l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~el 131 (707)
.++..+..+...+..+++.++.+...+.++|...... ..++..++..++++|..++..+..++.++..+-..|
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 432
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=50.04 E-value=2.4e+02 Score=30.01 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005229 100 ESKISSMQT-LIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHEN 178 (707)
Q Consensus 100 e~ei~~l~~-~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~ 178 (707)
+.-+.++.. .+.+++...+..=--...+.++-..+-=+++.++..++..+..+....-+.+++..+++..+..+..++-
T Consensus 110 EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~ 189 (405)
T KOG2010|consen 110 EASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQH 189 (405)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005229 179 EVESLEQKLDSMRKQQKK 196 (707)
Q Consensus 179 eL~~~e~el~~~~~ei~e 196 (707)
...+++..|..-++-|++
T Consensus 190 ~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 190 KMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHH
No 433
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=49.64 E-value=3.9e+02 Score=32.04 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHh-
Q 005229 172 KVRLHENEVESLEQKLDS-MRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEE- 249 (707)
Q Consensus 172 el~~~~~eL~~~e~el~~-~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~E- 249 (707)
..+.+..+|...-..++. .-..+-.....+..+...+.+...++.+++..+..+...+..+...++.++.+..+++-+
T Consensus 2 dad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~ 81 (701)
T PF09763_consen 2 DADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQS 81 (701)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Q ss_pred --hhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q 005229 250 --LISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLEL------KEREFE 321 (707)
Q Consensus 250 --le~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~------~e~~~~ 321 (707)
...+.++++.+...++--...+..+.. ..+... ..+..++..+..+...|.. ......
T Consensus 82 ~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~--~~l~~~------------~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~ 147 (701)
T PF09763_consen 82 ANQKLLLNELENLLDTLSIPEEHLEALRN--ASLSSP------------DGLEKIEEAAEALYKALKAIRPDLEKLDPGL 147 (701)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhc--CCCCCc------------ccHHHHHHHHHHHHHHHHhcccccccCCCcH
Q ss_pred HHHhhHHHhHHHHHHHHHHHHhh
Q 005229 322 KRVKEFELREKELDSIRKAVEDR 344 (707)
Q Consensus 322 ~~~~E~e~~e~~l~~~~~~~~~~ 344 (707)
..+.-+..+...+......+..|
T Consensus 148 ~~M~Av~er~~~~~~~~~~F~~r 170 (701)
T PF09763_consen 148 GQMRAVKERREEYEKVSDKFCKR 170 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 434
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.47 E-value=66 Score=36.19 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005229 65 KNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLK 118 (707)
Q Consensus 65 ~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~ 118 (707)
...+.+.+.....++++++.++.+++.+......++.+|+.++.++..++.+++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
No 435
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=49.47 E-value=4.2e+02 Score=29.61 Aligned_cols=325 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 14 QKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKN-LIEECYDEVELREKKVGEAQRSIEEQ 92 (707)
Q Consensus 14 ~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~-~i~e~~~e~~~~~~ei~~le~~i~e~ 92 (707)
+......+.=......-+...+..+......... ...-+..+..++.-+.. -+................+.+++...
T Consensus 8 k~sL~~a~~vc~~An~~~~~ar~~l~~~~~~~~k--~~fl~~~l~~Q~~~L~~~~~~~~~~~~~~~~~~f~~l~~~ld~~ 85 (412)
T PF04108_consen 8 KRSLSSAQHVCREANEILTSARQSLEESVPLSAK--TGFLRRGLKQQLKLLYKKVRSSLLIVYEWGQRDFKDLVKELDPA 85 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--
Q 005229 93 EKQLAFKESKISS-------------------------MQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKEL-- 145 (707)
Q Consensus 93 ~~el~ele~ei~~-------------------------l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~El-- 145 (707)
..+|...-..+.. +...-..+...+.........+...+..+...+..+...+
T Consensus 86 ~~~L~~~l~~Lr~t~v~~~~~~~~~~~ktL~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~ 165 (412)
T PF04108_consen 86 DARLEQTLDMLRNTKVPPFFRPPGEEPKTLYDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQLIN 165 (412)
T ss_pred HHHHHHHHHHHhCCcCCccccCCCCCCCcHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q ss_pred -----------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 146 -----------------------------ELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKK 196 (707)
Q Consensus 146 -----------------------------e~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~e 196 (707)
...=..+..++.++.++ +.++-.-++.|..-+.-.+. -..--.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~l~~le~ema~l---L~sLt~HfDqC~~a~~~~eg----~~~~~~e 238 (412)
T PF04108_consen 166 KRLKDYELLAPFQSSLGSSPSSSSSNPLMSTILKELHSLEQEMASL---LESLTNHFDQCVTAVRHTEG----EPMSEEE 238 (412)
T ss_pred hhhhhhhhccccccccCCCCCcccccccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc----CCCChHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHH
Q 005229 197 YFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQD 276 (707)
Q Consensus 197 l~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~ 276 (707)
....++-+.+.-.++..=+.+++..+...........+-+.+....+.....-+...-..+......+..--..+..+..
T Consensus 239 ~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~ 318 (412)
T PF04108_consen 239 RQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEE 318 (412)
T ss_pred HHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhhhhh
Q 005229 277 KSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVKEFELREKELDSIRKAVEDRSKN 347 (707)
Q Consensus 277 ~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~~~~~~~~~~~~~ 347 (707)
........+..+..++.+|..||+.....-.....|+..-....+....-......+++.+...-..++..
T Consensus 319 ~~~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l~eeE~~~Re~ 389 (412)
T PF04108_consen 319 RWEEEKESIQAYIDELEQLCEFYEGFLSAYDSLLLEVERRRAVRDKMKKIIREANEELDKLREEEQRRREA 389 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 436
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=49.46 E-value=5.3e+02 Score=30.86 Aligned_cols=177 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005229 87 RSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKL 166 (707)
Q Consensus 87 ~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l 166 (707)
..+..+.+.......-+..++.--.++.+.......++..+...|..---.-+++..+.+...+..+.+...+++.+.+.
T Consensus 840 ~K~~~l~kns~k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~ 919 (1259)
T KOG0163|consen 840 RKINALLKNSLKTIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQ 919 (1259)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhh
Q 005229 167 ELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGK 246 (707)
Q Consensus 167 ~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l 246 (707)
.+-.+.+...+...+..++.-+.-+++ .....+....+.+..-..+.-+..++..++-+.++..-..+.-..
T Consensus 920 ~~e~er~rk~qE~~E~ER~rrEaeek~--------rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~ 991 (1259)
T KOG0163|consen 920 IEELERLRKIQELAEAERKRREAEEKR--------RREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAK 991 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHhh
Q 005229 247 KEELISKGKTIAECSKEVELKKNQL 271 (707)
Q Consensus 247 ~~Ele~l~~~l~e~~~~le~k~~el 271 (707)
+.|-+.......+.++.=...-..+
T Consensus 992 e~eee~k~q~~~Eqer~D~~la~Rl 1016 (1259)
T KOG0163|consen 992 EAEEEAKRQNQLEQERRDHELALRL 1016 (1259)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
No 437
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=49.41 E-value=4.1e+02 Score=29.51 Aligned_cols=151 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 47 AQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIE---EQEKQLAFKESKISSMQTLIEENEGLLKDKEKL 123 (707)
Q Consensus 47 ~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~---e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e 123 (707)
++--++-+...+..+.++++.++..+.+......+--.|++.+. .+..--+-.+.+... ++|+.+...|+..+.+
T Consensus 247 m~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~lR~~L~kAEke 324 (575)
T KOG4403|consen 247 MMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred HHHH-----------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHHH
Q 005229 124 YDEV-----------------KNSLMLCETKLECEKKELELTQSSIKELSMEFHSEE--------EKLELLQGKVRLHEN 178 (707)
Q Consensus 124 ~~~l-----------------~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e--------~~l~~le~el~~~~~ 178 (707)
++.- +.|+...+.+.+...+++....+..+.+++...+.= ..++.....|.++++
T Consensus 325 le~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~ 404 (575)
T KOG4403|consen 325 LEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKS 404 (575)
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005229 179 EVESLEQKLDSMRKQQKKYFD 199 (707)
Q Consensus 179 eL~~~e~el~~~~~ei~el~~ 199 (707)
.|.+....+.+-..+-..++.
T Consensus 405 al~evtt~lrErl~RWqQIE~ 425 (575)
T KOG4403|consen 405 ALSEVTTLLRERLHRWQQIES 425 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 438
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=49.34 E-value=1.1e+02 Score=32.01 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 142 KKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELK 204 (707)
Q Consensus 142 ~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k 204 (707)
...+..++..+.....-+-++..+++.++.++.++...++...-+++.+.++..++-.+++..
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=49.28 E-value=1.1e+02 Score=28.46 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhcCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005229 29 NELNSLSVSLNLKNKPSS--AQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKI 103 (707)
Q Consensus 29 ~eL~~~~~el~~~~~~l~--~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei 103 (707)
..|+.+++.+.......+ ...+...+.+.+..+..++..++.++.++.....+|..|..++.+....-..++++|
T Consensus 55 ~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 55 RRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 440
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=49.19 E-value=3.3e+02 Score=28.39 Aligned_cols=147 Identities=18% Similarity=0.121 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH
Q 005229 11 GLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNL----------------IEECYDE 74 (707)
Q Consensus 11 ~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~----------------i~e~~~e 74 (707)
..+-++-.++=++++..+.+|.+..-+-....... ..++..+...+..++...++. -++++.-
T Consensus 19 ~~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~q-l~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelqkl 97 (268)
T PF11802_consen 19 EELIKECEELWKDMEECQNKLSLIGTETLTDSDAQ-LSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQKL 97 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchh-HHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHH
Q 005229 75 VELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSL--MLCETKLECEKKELELTQSSI 152 (707)
Q Consensus 75 ~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~el--e~le~el~~~~~Ele~~e~~i 152 (707)
+..++.-+...+...+.++.+++..++=+.+.+..++.+....+.+.+......... ..++.++..++...+.+-..+
T Consensus 98 ~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K~~~~k~~~e~Ll~~L 177 (268)
T PF11802_consen 98 ISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTKIEKIKEYKEKLLSFL 177 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 005229 153 KELSME 158 (707)
Q Consensus 153 ~~l~~e 158 (707)
.+.-.+
T Consensus 178 geFLee 183 (268)
T PF11802_consen 178 GEFLEE 183 (268)
T ss_pred HHHHHh
No 441
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=49.15 E-value=3e+02 Score=27.85 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005229 88 SIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLE 167 (707)
Q Consensus 88 ~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~ 167 (707)
++..++.-+......++.....+..++=-.+--.+...... ..++..+..++.++...++.|+.+-...... ..
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n---~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~---Q~ 171 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHN---EQLEAMLKRLEKELAKLKKEIEEVNRERKRR---QE 171 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 168 LLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEE 217 (707)
Q Consensus 168 ~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~ 217 (707)
....++..++.+-.+.-...-+++..+..+..++..++.+..+.+...+.
T Consensus 172 ~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~~ 221 (221)
T PF05700_consen 172 EAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQQ 221 (221)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
No 442
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=49.14 E-value=1e+02 Score=25.08 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005229 54 CQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKIS 104 (707)
Q Consensus 54 ~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~ 104 (707)
+...++++..++..++.+...+..++......+.++.....+|..++....
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 443
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=48.82 E-value=5.7 Score=44.87 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 005229 141 EKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQ----QKKYFDDVELKKRELNEIRKYIE 216 (707)
Q Consensus 141 ~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~e----i~el~~ele~k~~e~~e~~~ei~ 216 (707)
...+++...+...+-..+.+.+++++..+++.|.....+|++.+.+|..-+++ +-+++..++.=++++.....+-.
T Consensus 353 ~s~D~E~~~~~~~~~~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd 432 (495)
T PF12004_consen 353 LSADIEGKLKEYRESMKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKD 432 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhH
Q ss_pred HHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhH
Q 005229 217 ELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTR 284 (707)
Q Consensus 217 ~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~ 284 (707)
.-.+.| +..+-.-.++|.+|+..+..=++.++.-|++.+++|..+..--.+|..-+..++.+
T Consensus 433 ~qmksI------I~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~r 494 (495)
T PF12004_consen 433 SQMKSI------ISRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKER 494 (495)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHH------HhhhhhhhhhhhhhHHHHhcccccchHHHHHhhhhccccccccccccccccccccC
No 444
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=48.74 E-value=1.7e+02 Score=32.75 Aligned_cols=95 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHh
Q 005229 166 LELLQGKVRLHENEVESL-----EQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECS 240 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~-----e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~ 240 (707)
+.-+.+..+.+...+... =.++-.++.+..++..+++.++.+.+.+.++|......-+ +.+.+..+...+.
T Consensus 4 ~k~ir~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~ 79 (425)
T PRK05431 4 IKLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELK 79 (425)
T ss_pred HHHHHhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHH
Q ss_pred hhchhhHHhhhhhhhhHHHHHHHH
Q 005229 241 KEIPGKKEELISKGKTIAECSKEV 264 (707)
Q Consensus 241 ~El~~l~~Ele~l~~~l~e~~~~l 264 (707)
+++..+++++..++.++......|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 80 EEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
No 445
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=48.73 E-value=1.5e+02 Score=33.15 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhHH
Q 005229 88 SIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS----IKELSMEFHSEE 163 (707)
Q Consensus 88 ~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~----i~~l~~ele~~e 163 (707)
|+.-+..+.+...+.+....-.....-..+-.+..+...+..+++.+..+...+.+++...... .+.+..+...+.
T Consensus 3 Dik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~ 82 (418)
T TIGR00414 3 DRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELK 82 (418)
T ss_pred CHHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 164 EKLELLQGKVRLHENEVESLEQKL 187 (707)
Q Consensus 164 ~~l~~le~el~~~~~eL~~~e~el 187 (707)
+++..++.++..++.++...-..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 83 EELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
No 446
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=48.66 E-value=2.9e+02 Score=32.19 Aligned_cols=103 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 52 NKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ----LAFKESKISSMQTLIEENEGLLKDKEKLYDEV 127 (707)
Q Consensus 52 ~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e----l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l 127 (707)
..+++++..+............++- -..++..++..++++... ...+.+..+++.+...+........+...+.+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 128 KNSLMLCETKLECEKKELELTQSSIKEL 155 (707)
Q Consensus 128 ~~ele~le~el~~~~~Ele~~e~~i~~l 155 (707)
+...+.+..++.+++.--...-.+|...
T Consensus 243 ~~~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 243 QNDKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHhHHHHHHHHHHHHhccHhHHHHHHHH
No 447
>PRK00846 hypothetical protein; Provisional
Probab=48.10 E-value=1.6e+02 Score=24.57 Aligned_cols=58 Identities=7% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQ 107 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~ 107 (707)
+.-+-..+...+.+++.++.-.+.-+..+...+......|..+...+..+..++..+.
T Consensus 4 ~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 4 LSLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 448
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=47.67 E-value=3.3e+02 Score=27.96 Aligned_cols=198 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005229 96 LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRL 175 (707)
Q Consensus 96 l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~ 175 (707)
...+.+++..-....+++..=+++--.--......|..+-.....-..+.-.+......+..+ .+.+-.....
T Consensus 7 y~~l~~r~~~g~~~~~el~~f~kERA~IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E-------~e~~a~~H~~ 79 (240)
T cd07672 7 YDCIIQHLNDGRKNCKEFEDFLKERASIEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQ-------IDNVGQSHIQ 79 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHH-------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhh
Q 005229 176 HENEVESLEQKLDSM----RKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELI 251 (707)
Q Consensus 176 ~~~eL~~~e~el~~~----~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele 251 (707)
+...|.+.-..+... .++.+.+...++...+.....-..+.+.....+..=.+.+.+.+.+.. .......++++
T Consensus 80 la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~--~~~~~~~ke~~ 157 (240)
T cd07672 80 LAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNR--NANLVNVKQQE 157 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHH
Q 005229 252 SKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKG 305 (707)
Q Consensus 252 ~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~ 305 (707)
.+...+......++.-+.++...-..+...... +..+|..-...|..+|.+
T Consensus 158 K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~---w~~~~~~~c~~fq~lEee 208 (240)
T cd07672 158 KLFAKLAQSKQNAEDADRLYMQNISVLDKIRED---WQKEHVKACEFFEKQECE 208 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
No 449
>PF14282 FlxA: FlxA-like protein
Probab=47.67 E-value=1.3e+02 Score=26.72 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 94 KQLAFKESKISSMQTLIEENEG----LLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 94 ~el~ele~ei~~l~~~i~e~~~----~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
..+..|++.|..++..|..+.. .-+.+....+.++..|..++..|..+..+.......
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 450
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=47.47 E-value=2.8e+02 Score=27.01 Aligned_cols=102 Identities=22% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHh
Q 005229 170 QGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEE 249 (707)
Q Consensus 170 e~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~E 249 (707)
+..+..+-..+-+++..++.++..++++...+..-.+.--....++.+++.+|..+....+.+-.-++...+....+.+-
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~ 150 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKET 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Q ss_pred -hhhhhhhHHHHHHHHHHHHHhh
Q 005229 250 -LISKGKTIAECSKEVELKKNQL 271 (707)
Q Consensus 250 -le~l~~~l~e~~~~le~k~~el 271 (707)
-..++.+=..+...+-.+++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~ 173 (189)
T TIGR02132 151 IQKQIKTQGEQLQAQLLEKQEAL 173 (189)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHH
No 451
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=47.47 E-value=3.4e+02 Score=28.07 Aligned_cols=235 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 005229 19 EFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEV-ELREKKVGEAQRSIEEQEKQLA 97 (707)
Q Consensus 19 ~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~-~~~~~ei~~le~~i~e~~~el~ 97 (707)
+..+-|+.+..++-++-..+++--.--+---+..++...-.--..-...+++...++ +.+-.+-..++.-|.++.+--.
T Consensus 60 dy~kiletlnkeiaeatksfkeagsy~dypaiisklsaavenak~e~~~id~~na~i~k~lAeeNqKIq~gi~EL~Kl~~ 139 (353)
T PF01540_consen 60 DYSKILETLNKEIAEATKSFKEAGSYGDYPAIISKLSAAVENAKNEKKAIDDKNAQIDKKLAEENQKIQNGIEELKKLSN 139 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHhH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHH
Q 005229 98 FKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEE----EKLELLQGKV 173 (707)
Q Consensus 98 ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e----~~l~~le~el 173 (707)
+...--..+...|..++....--..-...+..=++.+...-.++..-.......-.-.-.+|++.. .....+..+.
T Consensus 140 e~~~l~kTi~~TIa~lEKKFqI~~~FKekLesfa~~L~~KS~eI~tFttv~s~k~eF~L~ELESFKEinTtwfNgmksEW 219 (353)
T PF01540_consen 140 EAFELSKTINKTIAKLEKKFQIDKDFKEKLESFADLLNKKSREIDTFTTVQSTKEEFVLNELESFKEINTTWFNGMKSEW 219 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHH----hHHHHHHHHHHHhhhchhhHHh
Q 005229 174 RLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDK----ELRFVQQSIEECSKEIPGKKEE 249 (707)
Q Consensus 174 ~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~----el~~~~~~le~l~~El~~l~~E 249 (707)
..+..-..+.-.+++.+-+.++++++.-....+--+.+..-+.++++....-.. +.......++.+..++-....+
T Consensus 220 A~V~~AwkneLsEINSI~~gvEeLkKLAqEIss~Sn~lk~TIseLEKkFkIdd~tn~~e~k~fK~qlE~ladqLl~ks~~ 299 (353)
T PF01540_consen 220 ARVQEAWKNELSEINSIIKGVEELKKLAQEISSHSNKLKATISELEKKFKIDDSTNKEEMKKFKNQLENLADQLLEKSRQ 299 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred hhhh
Q 005229 250 LISK 253 (707)
Q Consensus 250 le~l 253 (707)
+.++
T Consensus 300 id~f 303 (353)
T PF01540_consen 300 IDEF 303 (353)
T ss_pred cchh
No 452
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=47.29 E-value=87 Score=38.00 Aligned_cols=225 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHH
Q 005229 60 ELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEG-LLKDKEKLYDEVKNSLMLCETKL 138 (707)
Q Consensus 60 el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~-~l~~~e~e~~~l~~ele~le~el 138 (707)
++.+++......+.......+++.++++++..+..++......+........-... .+...+...+.+..++..++...
T Consensus 11 qF~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~~~~ 90 (759)
T PF01496_consen 11 QFRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELEEELRELNENL 90 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHHH----HHH-----HHHHHHHHHHHHHHHHHHHH--
Q 005229 139 ECEKKELELTQSSIKELSMEFHSEEEK-------LELLQGKVRLHE----NEV-----ESLEQKLDSMRKQQKKYFDD-- 200 (707)
Q Consensus 139 ~~~~~Ele~~e~~i~~l~~ele~~e~~-------l~~le~el~~~~----~eL-----~~~e~el~~~~~ei~el~~e-- 200 (707)
+++..++..+.+....++.....+... ...+......+. ..+ .--.......++.+......
T Consensus 91 e~L~~~~~~L~E~~~~L~~~~~~l~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~N~ 170 (759)
T PF01496_consen 91 EKLEEELNELEEEKNVLEEEIEFLEELKLEELEPWKNLDIDLEELESSKFLNLGFIAGVIPREKIESFERILWRATRGNI 170 (759)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhhccccceeeeEEEEEEehhhHHHHHHHHHHhccCCe
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHH
Q 005229 201 --------------------------------VELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKE 248 (707)
Q Consensus 201 --------------------------------le~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~ 248 (707)
.+...+-+....-..-.+-..-......+..++++++++.++++..++
T Consensus 171 fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~ 250 (759)
T PF01496_consen 171 FIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEE 250 (759)
T ss_dssp ---S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhH
Q 005229 249 ELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTR 284 (707)
Q Consensus 249 Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~ 284 (707)
++..+...+...-..+...-........-+..+...
T Consensus 251 ~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 286 (759)
T PF01496_consen 251 ELKKLLEKYAEELEAWYEYLRKEKEIYEALNKFAST 286 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 453
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=47.26 E-value=24 Score=28.70 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=0.0
Q ss_pred eEEEEecCCCCcccccCCCCcHHHHHHH
Q 005229 650 WAAEIRDPKKAARIWLGTFDTAEAAALA 677 (707)
Q Consensus 650 w~a~i~~~~~~~~~~lG~f~t~e~Aa~a 677 (707)
|-++|.-..-.-..|.|-|+|.++|..+
T Consensus 10 WWveI~T~~P~ctYyFGPF~s~~eA~~~ 37 (68)
T PF08846_consen 10 WWVEIETQNPNCTYYFGPFDSREEAEAA 37 (68)
T ss_pred EEEEEEcCCCCEEEEeCCcCCHHHHHHH
No 454
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=47.20 E-value=2.4e+02 Score=26.25 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 005229 115 GLLKDKEKLYDEVKNSLMLCETKL-----ECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKL-D 188 (707)
Q Consensus 115 ~~l~~~e~e~~~l~~ele~le~el-----~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el-~ 188 (707)
..++..-.....+...+..++..+ ..+.......+..+..+..........+......+..++.....+..+. .
T Consensus 1 ~~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~ 80 (136)
T PF04871_consen 1 AELKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARK 80 (136)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Q 005229 189 SMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPAS 224 (707)
Q Consensus 189 ~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~ 224 (707)
..+.++++|---+......+......+..+...+..
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVSd 116 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYKERLKELGEEVSD 116 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCccC
No 455
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=47.20 E-value=20 Score=32.43 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005229 83 GEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSE 162 (707)
Q Consensus 83 ~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~ 162 (707)
..|+.=|.+|..+|+.-.+........+......|-.-...+..+..++..++..-..+..+|+.++..-.++..-|..+
T Consensus 18 k~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~l 97 (116)
T PF05064_consen 18 KTLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPL 97 (116)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 005229 163 EEKLELL 169 (707)
Q Consensus 163 e~~l~~l 169 (707)
|..+..+
T Consensus 98 E~~~~~l 104 (116)
T PF05064_consen 98 EKQVEKL 104 (116)
T ss_dssp CCTT---
T ss_pred HHHHHHH
No 456
>PF14282 FlxA: FlxA-like protein
Probab=47.14 E-value=1.3e+02 Score=26.75 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 73 DEVELREKKVGEAQRSIEEQEK----QLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNS 130 (707)
Q Consensus 73 ~e~~~~~~ei~~le~~i~e~~~----el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~e 130 (707)
..+..+.++|..|..+|..+.. .-+.+...+..++..|..+...|..++.........
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 457
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=47.01 E-value=3.2e+02 Score=27.67 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 72 YDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 72 ~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
..+......++++|.++..-.-+.+.+.+++.+...+..+++...+++..+++... ......+=++-++++++.....
T Consensus 35 ~~q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~--~~k~~~dF~~~Lq~~Lk~V~td 112 (230)
T PF03904_consen 35 KTQMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDK--TEKVHNDFQDILQDELKDVDTD 112 (230)
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhchH
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 152 IKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKREL 208 (707)
Q Consensus 152 i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~ 208 (707)
++... +..++.+.+++..++-++++.-.+..+...+.+
T Consensus 113 --e~k~~-----------------~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~ 150 (230)
T PF03904_consen 113 --ELKNI-----------------AQNEIKKVREENKSMLQEVKQSHEKYQKRQKSM 150 (230)
T ss_pred --HHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=46.96 E-value=2.3e+02 Score=25.87 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 122 KLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHS----------------EEEKLELLQGKVRLHENEVESLEQ 185 (707)
Q Consensus 122 ~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~----------------~e~~l~~le~el~~~~~eL~~~e~ 185 (707)
+.|..+..++..++.++...+.+++.++....++.-=-+. ...-...+++.-..+.++|+.++.
T Consensus 23 N~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les 102 (131)
T KOG1760|consen 23 NEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELES 102 (131)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 005229 186 KLDSMRKQQKKYFDDV 201 (707)
Q Consensus 186 el~~~~~ei~el~~el 201 (707)
++..+..+++++..-+
T Consensus 103 ~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 103 ELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHH
No 459
>PLN02320 seryl-tRNA synthetase
Probab=46.61 E-value=1.7e+02 Score=33.42 Aligned_cols=100 Identities=7% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 23 ELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESK 102 (707)
Q Consensus 23 eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~e 102 (707)
+++....+.+..+..+....... -..++-.+..+...+..+++.+..+...+.++|.. ..-..+..++..+
T Consensus 68 D~k~ir~n~~~v~~~l~~R~~~~----~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~~l~~~ 138 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNRNSNA----NLELVLELYENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQALVEE 138 (502)
T ss_pred CHHHHHhCHHHHHHHHHhcCCCc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005229 103 ISSMQTLIEENEGLLKDKEKLYDEVKNSL 131 (707)
Q Consensus 103 i~~l~~~i~e~~~~l~~~e~e~~~l~~el 131 (707)
...+++.+..++..+..++.++..+-..+
T Consensus 139 ~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 139 GKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 460
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=46.58 E-value=5.1e+02 Score=29.85 Aligned_cols=125 Identities=16% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKN 129 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ 129 (707)
..+.++.+-.+-..|.+..+.++.-+..+-.++.+|.-+-.-++.+++..+.--..++..|.+++.+|+....+....+.
T Consensus 299 MGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~ 378 (832)
T KOG2077|consen 299 MGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ 378 (832)
T ss_pred chHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005229 130 SLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVR 174 (707)
Q Consensus 130 ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~ 174 (707)
+-..-+.+--=+-..-.-.+.++...--+...+++++-++++.+.
T Consensus 379 ~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 379 KAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred hhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
No 461
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.57 E-value=2.2e+02 Score=31.86 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHhhhHhhHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 23 ELELKENELNSLSVSLNLK-NKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKES 101 (707)
Q Consensus 23 eL~l~e~eL~~~~~el~~~-~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ 101 (707)
.++....+.+..++.+... .... ...++-++..+...+...++.++.+...+.++|...-..-.+ ....+..
T Consensus 3 d~k~ir~n~d~v~~~l~~r~~~~~----~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~ 75 (429)
T COG0172 3 DLKLIRENPDAVREKLKKRGGDAL----DVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIA 75 (429)
T ss_pred hHHHhhhCHHHHHHHHhhcCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005229 102 KISSMQTLIEENEGLLKDKEKLYDEVKNSL 131 (707)
Q Consensus 102 ei~~l~~~i~e~~~~l~~~e~e~~~l~~el 131 (707)
+++.++..++.++..+...+.+++.+-..+
T Consensus 76 e~~~l~~~l~~~e~~~~~~~~~l~~~ll~i 105 (429)
T COG0172 76 EVKELKEKLKELEAALDELEAELDTLLLTI 105 (429)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhC
No 462
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=46.51 E-value=1.5e+02 Score=27.67 Aligned_cols=93 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005229 54 CQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLML 133 (707)
Q Consensus 54 ~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~ 133 (707)
++++...+..-.+.+..+...+..+.+++..+++........+.+...+-..+...+-.+-..++.+...=-.+..+-+.
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~ 111 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEE 111 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 005229 134 CETKLECEKKELE 146 (707)
Q Consensus 134 le~el~~~~~Ele 146 (707)
+...++.+..++.
T Consensus 112 L~~~le~l~~~l~ 124 (141)
T PF13874_consen 112 LRKRLEALEAQLN 124 (141)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHc
No 463
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=46.50 E-value=2.4e+02 Score=27.28 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q 005229 14 QKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGE-----AQRS 88 (707)
Q Consensus 14 ~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~-----le~~ 88 (707)
++-...+.-.--...-++..++.++.-....+.+.-+..=..-..-++..+..+|.-+..+|..+++++.. +..+
T Consensus 60 Edtf~nll~~a~k~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~ 139 (181)
T PF04645_consen 60 EDTFNNLLLQAFKSNAEARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKDLNEE 139 (181)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 005229 89 IEEQEKQLAFKESKISSMQTLI 110 (707)
Q Consensus 89 i~e~~~el~ele~ei~~l~~~i 110 (707)
++.++.+|.++.++-+....++
T Consensus 140 i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 140 IESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 464
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.44 E-value=3.9e+02 Score=28.44 Aligned_cols=214 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 10 MGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSI 89 (707)
Q Consensus 10 ~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i 89 (707)
+...-.+++++...++.+.+.++.++..-....... ...+.-...++..+......-..+...+..++++.
T Consensus 35 l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~---------~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~ 105 (297)
T KOG0810|consen 35 LEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSP---------NADKELKRKLESLVDEIRRRARKIKTKLKALEKEN 105 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 005229 90 EEQE-------------KQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLC-ETKLECEKKELELTQSSIKEL 155 (707)
Q Consensus 90 ~e~~-------------~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~l-e~el~~~~~Ele~~e~~i~~l 155 (707)
.... .+...+-+++.++=.........+....++.-.-+..+-.. ...-+.+..-++. ......
T Consensus 106 ~~~~~~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~--g~~~~f 183 (297)
T KOG0810|consen 106 EADETQNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIES--GGSEVF 183 (297)
T ss_pred HhccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHC--CChHHH
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHH
Q 005229 156 SMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQ 234 (707)
Q Consensus 156 ~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~ 234 (707)
...+-.-..+....-.++..-.++|..+++.|.++-+-.-++.-.++.-.+-++.++..+.....-++.-..++..+.+
T Consensus 184 ~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~ 262 (297)
T KOG0810|consen 184 TQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK 262 (297)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=46.23 E-value=3e+02 Score=28.65 Aligned_cols=107 Identities=10% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhh
Q 005229 173 VRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELIS 252 (707)
Q Consensus 173 l~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~ 252 (707)
.+...+...+++.-+....+++++ ..+-+-+..+++.+..++.++.+.+...+.. ........++......++++..-
T Consensus 143 ~~~~~~~~~ekd~~i~~~~~~~e~-d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~~~ 220 (264)
T PF07246_consen 143 YEELKKEAEEKDQLIKEKTQEREN-DRRNQILSHEISNLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRNESKW 220 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhh-hhHHHHHHHHHHHhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHhhhhh
Q 005229 253 KGKTIAECSKEVELKKNQLNLIQDKSSLF 281 (707)
Q Consensus 253 l~~~l~e~~~~le~k~~ele~l~~~le~l 281 (707)
+..++.........+++....+..-...+
T Consensus 221 l~~el~~aK~~~~~~~~~~~~~~sv~~al 249 (264)
T PF07246_consen 221 LEHELSDAKEDMIRLRNDISDFTSVPQAL 249 (264)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHH
No 466
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=46.22 E-value=1.5e+02 Score=23.61 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 63 LWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKL 123 (707)
Q Consensus 63 ~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e 123 (707)
++.+.++.--.-+..+..++.......-.+...|.+.+.+...+...|..+..+++.+...
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 467
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=46.01 E-value=3.6e+02 Score=27.91 Aligned_cols=204 Identities=17% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005229 54 CQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLML 133 (707)
Q Consensus 54 ~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~ 133 (707)
|..+..-+....++-..+......+.+++.+-...|+.=-.+|..+-++..++.+.++..-..++.+-.--......++.
T Consensus 92 isklsaavenak~e~~~id~~na~i~k~lAeeNqKIq~gi~EL~Kl~~e~~~l~kTi~~TIa~lEKKFqI~~~FKekLes 171 (353)
T PF01540_consen 92 ISKLSAAVENAKNEKKAIDDKNAQIDKKLAEENQKIQNGIEELKKLSNEAFELSKTINKTIAKLEKKFQIDKDFKEKLES 171 (353)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 005229 134 CETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQ-KKYFDDVELKKRELNEIR 212 (707)
Q Consensus 134 le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei-~el~~ele~k~~e~~e~~ 212 (707)
.-..+-....++..-.........- .-.+|+..+.=-...-..+ .++..-.+...+++.++.
T Consensus 172 fa~~L~~KS~eI~tFttv~s~k~eF-----------------~L~ELESFKEinTtwfNgmksEWA~V~~AwkneLsEIN 234 (353)
T PF01540_consen 172 FADLLNKKSREIDTFTTVQSTKEEF-----------------VLNELESFKEINTTWFNGMKSEWARVQEAWKNELSEIN 234 (353)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhh-----------------hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------HHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHH-hhhhhhhhHHHHHHHHHHHHHhhhHH
Q 005229 213 ------KYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKE-ELISKGKTIAECSKEVELKKNQLNLI 274 (707)
Q Consensus 213 ------~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~-Ele~l~~~l~e~~~~le~k~~ele~l 274 (707)
.+++.+.++|..+.+.+......++.+-+=...-.. +....+++++-..+.|-.+-.+++.+
T Consensus 235 SI~~gvEeLkKLAqEIss~Sn~lk~TIseLEKkFkIdd~tn~~e~k~fK~qlE~ladqLl~ks~~id~f 303 (353)
T PF01540_consen 235 SIIKGVEELKKLAQEISSHSNKLKATISELEKKFKIDDSTNKEEMKKFKNQLENLADQLLEKSRQIDEF 303 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHhhcccchh
No 468
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.75 E-value=87 Score=35.28 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005229 51 INKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQ 107 (707)
Q Consensus 51 ~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~ 107 (707)
...+.+.+....+++++++.+..+...+.+....++.+|++++.++..++.+++...
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
No 469
>PLN02678 seryl-tRNA synthetase
Probab=45.72 E-value=1.1e+02 Score=34.59 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHH
Q 005229 185 QKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEV 264 (707)
Q Consensus 185 ~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~l 264 (707)
.++-.++.+..++..+++.++.+.+.+-++|..+...- .+.+.+..+...+.+++..++.++..++.++.+....|
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~----~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK----EDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 470
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=45.26 E-value=1.6e+02 Score=23.59 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005229 70 ECYDEVELREKKVGEAQRSIEEQEKQ--------------LAFKESKISSMQTLIEENEGLLKDKE 121 (707)
Q Consensus 70 e~~~e~~~~~~ei~~le~~i~e~~~e--------------l~ele~ei~~l~~~i~e~~~~l~~~e 121 (707)
++..++..+++++..++.+|...... ++.-..++..+...+..+...|..+.
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 471
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=45.11 E-value=94 Score=26.50 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005229 164 EKLELLQGKVRLHENEVESLEQKLDS---MRKQQKKYFDDVELKKRELNEIRKYIEELNQD 221 (707)
Q Consensus 164 ~~l~~le~el~~~~~eL~~~e~el~~---~~~ei~el~~ele~k~~e~~e~~~ei~~l~~e 221 (707)
.+++.+++.+..+..+|+..+..+.. -.+....+.+++..+.+.+...+.++..+.++
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
No 472
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=45.02 E-value=3.3e+02 Score=27.11 Aligned_cols=149 Identities=19% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 49 EWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVK 128 (707)
Q Consensus 49 l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~ 128 (707)
+...+.+.-..........-.+.......++.++..-..++......|...+..+......++..+..+...+..+....
T Consensus 40 ~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~ 119 (201)
T PF12072_consen 40 LEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRK 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 129 NSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKK 205 (707)
Q Consensus 129 ~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~ 205 (707)
..++..+.++..+..+....=..|..+..+ ...+.-+..++.++...-..+-..-.+--....+-....
T Consensus 120 ~~l~~~~~e~~~~~~~~~~~Le~iAglT~e--------EAk~~Ll~~le~e~~~e~a~~ir~~eeeak~~A~~~Ar~ 188 (201)
T PF12072_consen 120 EELEEREEELEELIEEQQQELEEIAGLTAE--------EAKEILLEKLEEEARREAAALIRRIEEEAKEEADKKARR 188 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=44.61 E-value=7.3 Score=44.05 Aligned_cols=141 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHH
Q 005229 68 IEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKL----YDEVKNSLMLCETKLECEKK 143 (707)
Q Consensus 68 i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e----~~~l~~ele~le~el~~~~~ 143 (707)
+.....+++...++...-.+..+.++.+|..|+.++....+.+++++.+|...+.. +...+.+++.-|..+...+.
T Consensus 350 M~~~s~D~E~~~~~~~~~~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~ 429 (495)
T PF12004_consen 350 MNHLSADIEGKLKEYRESMKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQE 429 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccccchhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhh
Q ss_pred HHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 144 ELEL-TQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKREL 208 (707)
Q Consensus 144 Ele~-~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~ 208 (707)
+-+. ++.-|..+-..-+++..+..+.+.-++..+.=|+.-+..|..++..-..+...|..+++++
T Consensus 430 eKd~qmksII~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~ry 495 (495)
T PF12004_consen 430 EKDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKERY 495 (495)
T ss_dssp ------------------------------------------------------------------
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchHHHHHhhhhccccccccccccccccccccCC
No 474
>PTZ00464 SNF-7-like protein; Provisional
Probab=44.23 E-value=3.5e+02 Score=27.25 Aligned_cols=145 Identities=8% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005229 64 WKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFK--------ESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCE 135 (707)
Q Consensus 64 l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~el--------e~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le 135 (707)
+.+.+..+......+.++|..|+.++..++..+... +.+.-.+=+.-.-++..+..+......+..-...++
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie 95 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTE 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 005229 136 TKLECEKKELELTQSSIKELSMEFHSEE-EKLELLQGKVRLHENEVESLEQKLDS-----MRKQQKKYFDDVELKKRELN 209 (707)
Q Consensus 136 ~el~~~~~Ele~~e~~i~~l~~ele~~e-~~l~~le~el~~~~~eL~~~e~el~~-----~~~ei~el~~ele~k~~e~~ 209 (707)
.-... ..-+..++..-+.++.-...+. ..++.+..++.+....-.++..-|.. -+..=+++..+++.+..+..
T Consensus 96 ~a~~~-~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~ 174 (211)
T PTZ00464 96 SVKDT-KVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDME 174 (211)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHh
No 475
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=44.22 E-value=4e+02 Score=27.87 Aligned_cols=244 Identities=18% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------------HHHHHHHHH
Q 005229 83 GEAQRSIEEQEKQ--LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKL-------------ECEKKELEL 147 (707)
Q Consensus 83 ~~le~~i~e~~~e--l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el-------------~~~~~Ele~ 147 (707)
..|-..+.++... +..+...+..+..........|...+..+..-..+-+.+.... ..+..++..
T Consensus 9 ~~l~~~~~~v~~~~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~ 88 (296)
T PF13949_consen 9 PSLLEKSEEVRSEGGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQK 88 (296)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 148 TQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMR-----------KQQKKYFDDVELKKRELNEIRKYIE 216 (707)
Q Consensus 148 ~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~-----------~ei~el~~ele~k~~e~~e~~~ei~ 216 (707)
.+..+.....--..+...+......+..+..-...+...+-... ..++.+-..+..+..+-..+..++.
T Consensus 89 ~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk 168 (296)
T PF13949_consen 89 YREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLK 168 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcChhhHHHhHH--------HHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHH
Q 005229 217 ELNQDPASKDKELR--------FVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVY 288 (707)
Q Consensus 217 ~l~~eie~~~~el~--------~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~ 288 (707)
. .-.-...-.-+. ..+.-+..-.+.+......++.-...-..+...|......+-......... ..+..+
T Consensus 169 ~-~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~-~~r~~~ 246 (296)
T PF13949_consen 169 E-KLQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQ-KERESA 246 (296)
T ss_dssp H------HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHH-HHHHHH
T ss_pred H-HHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005229 289 LKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVKEFE 328 (707)
Q Consensus 289 ~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E~e 328 (707)
-..|..-...|..+...|.+-..-...+...+........
T Consensus 247 ~~~l~~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~ 286 (296)
T PF13949_consen 247 LQRLEAAYDAYKELSSNLEEGLKFYNDLLEILNKLQQKVE 286 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=44.13 E-value=4.3e+02 Score=28.23 Aligned_cols=115 Identities=12% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 005229 132 MLCETKLECEKKELELTQSSIKELS-----MEFHSEEEKLELLQGKVRLHENEVESLEQKLDS---MRKQQKKYFDDVEL 203 (707)
Q Consensus 132 e~le~el~~~~~Ele~~e~~i~~l~-----~ele~~e~~l~~le~el~~~~~eL~~~e~el~~---~~~ei~el~~ele~ 203 (707)
..++.++......+...+..+..+. .++...+..+...+.++...+..++..+.-+.. -..++++...++..
T Consensus 77 ~~~~~~l~~~~a~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~ 156 (331)
T PRK03598 77 APYENALMQAKANVSVAQAQLDLMLAGYRDEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQ 156 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHh-----cChhhHHHhHHHHHHHHHHHhhhchhh
Q 005229 204 KKRELNEIRKYIEELN-----QDPASKDKELRFVQQSIEECSKEIPGK 246 (707)
Q Consensus 204 k~~e~~e~~~ei~~l~-----~eie~~~~el~~~~~~le~l~~El~~l 246 (707)
.+..+......+..+. .++...+..+...+..++.....+...
T Consensus 157 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l~~~ 204 (331)
T PRK03598 157 AQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNLQDT 204 (331)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 477
>PRK01203 prefoldin subunit alpha; Provisional
Probab=44.05 E-value=2.2e+02 Score=26.31 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------------------------------
Q 005229 83 GEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSL------------------------------- 131 (707)
Q Consensus 83 ~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~el------------------------------- 131 (707)
..+..+++-++.+++.+..++..++..+.++...++.+...-..-..++
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VE 82 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIA 82 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEE
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005229 132 MLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHEN 178 (707)
Q Consensus 132 e~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~ 178 (707)
...+..++.+.+.++.++.-+......+..++..+..+- +.++.+
T Consensus 83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~--~~~~~~ 127 (130)
T PRK01203 83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY--ITEATR 127 (130)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
No 478
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=44.01 E-value=1.1e+02 Score=28.50 Aligned_cols=92 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHH
Q 005229 160 HSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEEC 239 (707)
Q Consensus 160 e~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l 239 (707)
+++..++..-++.+......|..+.+.+..+...--.....++....+..++...+-.+-..++.++..=-.+..+.+.+
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L 112 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEEL 112 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q ss_pred hhhchhhHHhhh
Q 005229 240 SKEIPGKKEELI 251 (707)
Q Consensus 240 ~~El~~l~~Ele 251 (707)
...++.+..++.
T Consensus 113 ~~~le~l~~~l~ 124 (141)
T PF13874_consen 113 RKRLEALEAQLN 124 (141)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHc
No 479
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.73 E-value=5.4e+02 Score=29.26 Aligned_cols=312 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 3 SWRVEKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKV 82 (707)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei 82 (707)
+-...+.+.....+.+...+.+...+-+--.---.+-+.++-- ......-....+..+...+........-+++..
T Consensus 103 ~~~k~~~~kdik~E~ea~~k~l~q~~~d~l~~~~~fle~Ek~d----~e~~m~~~~~q~Esls~~le~~~~~~~~~~kl~ 178 (613)
T KOG0992|consen 103 SVRKAQTQKDIKCEEEAKIKNLQQIEIDKLKNLLSFLEQEKVD----REGLMRQQTQQIESLSEELERLRPIESVAEKLR 178 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005229 83 GEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSE 162 (707)
Q Consensus 83 ~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~ 162 (707)
-.++..--.....-..+..-.....+........++.-+..+-..=.++..= ..+..+..+....+..++.+..-....
T Consensus 179 ie~e~~~h~~qq~e~~l~t~~a~~e~~nrh~~erlk~~~~s~~e~l~kl~~E-qQlq~~~~ehkllee~~~rl~~~~s~V 257 (613)
T KOG0992|consen 179 IELEQLRHSTQQEENLLTTTLAAVEEENRHLKERLKIVEESRLESLGKLNSE-QQLQALIREHKLLEEHLERLHLQLSDV 257 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHH
Q 005229 163 E----EKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEE 238 (707)
Q Consensus 163 e----~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~ 238 (707)
+ .++...+.....++......-.+....-+.++.+..+.+.-.-++.-...++..-.....-+.....++--.++.
T Consensus 258 egS~S~~~l~~ek~r~~lee~~~~e~~e~rk~v~k~~~l~q~~~~~~~eL~K~kde~~~n~~~~~lie~lq~el~~al~~ 337 (613)
T KOG0992|consen 258 EGSWSGQNLALEKQRSRLEEQVAEETTEKRKAVKKRDDLIQSRKQVSFELEKAKDEIKQNDDKVKLIEELQDELSVALKE 337 (613)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 239 CSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKE-LKEKETHFDSLKKGLEDRLQDLELKE 317 (707)
Q Consensus 239 l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~-~~el~~~~~~le~~L~~~~~eL~~~e 317 (707)
...++ ....++.-.+..+.....+....+.-+-....+...+..- +.+ +.++...|...+.....-..+|....
T Consensus 338 c~eeN-~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~se~~e~----teqkleelk~~f~a~q~K~a~tikeL~~El 412 (613)
T KOG0992|consen 338 CREEN-KIETQVNFERNKLQNEETEKKEEKTLLAAADDRFSEYSEL----TEQKLEELKVQFTAKQEKHAETIKELEIEL 412 (613)
T ss_pred HHHhh-hHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 005229 318 REFEKRV 324 (707)
Q Consensus 318 ~~~~~~~ 324 (707)
...+..+
T Consensus 413 ~~yrr~i 419 (613)
T KOG0992|consen 413 EEYRRAI 419 (613)
T ss_pred HHHHHhc
No 480
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=43.34 E-value=4.3e+02 Score=27.98 Aligned_cols=187 Identities=18% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 82 VGEAQRSIEEQEKQ--LAFKESKISSMQTLIEENEGLLKDKEK--------LYDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 82 i~~le~~i~e~~~e--l~ele~ei~~l~~~i~e~~~~l~~~e~--------e~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
...|...|.....+ ......-....+..|..+...+...-. .++.+...+..+..+....-..=-....-
T Consensus 98 ~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~~~~~Y~~~p~Kg~ka~ev 177 (297)
T PF02841_consen 98 QKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDELEKEYEQEPGKGVKAEEV 177 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHHHHHHHHHSS---TTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCccHHHH
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhhHHHhHH
Q 005229 152 IKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQD-PASKDKELR 230 (707)
Q Consensus 152 i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~e-ie~~~~el~ 230 (707)
+...-...+..+..+......+...++.+...+.+......+...+..........+......+++.... .+.++.+..
T Consensus 178 L~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 178 LQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhchhhHHhh--hhhhhhHHHHHHHHHHHH
Q 005229 231 FVQQSIEECSKEIPGKKEEL--ISKGKTIAECSKEVELKK 268 (707)
Q Consensus 231 ~~~~~le~l~~El~~l~~El--e~l~~~l~e~~~~le~k~ 268 (707)
.+..+.+.+.........++ +....+.....++|..++
T Consensus 258 ~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 258 QLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 481
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=43.12 E-value=1.5e+02 Score=37.08 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHhhcCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCcchhhhhhhhhccCCCCCCCCCCCCC
Q 005229 522 CSTTAEGRSAPSMLVGTSAPLNQSVSSPMNLPQCSGMDPNSSTSSLVSQYSGAQPQLENQYKRLRRESPSTIAYTPQTPA 601 (707)
Q Consensus 522 ~~li~~g~~~~a~~~~~~~~l~~~~~p~~~~~s~~~~~~~s~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (707)
..++++|+.+.- ++.....-...+++-++.++.+..||..+++++-+..+.+ +.+|+++++.|..|+
T Consensus 1420 ~e~l~~~~~~~~-p~~~~~~~~sp~~s~~ssp~~s~tsp~ysptsp~ys~tsp------------~~sptspsysptsps 1486 (1605)
T KOG0260|consen 1420 AEKLKKGIEIPM-PWSNMSSPASPGSSYSSSPGYSPTSPNYSPTSPSYSPTSP------------SYSPTSPSYSPTSPS 1486 (1605)
T ss_pred HHhhhccCccCC-cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCC------------CCCCCCCCCCCCCCC
Q ss_pred CCCCCCCccccccCCCccCCCCCcccccccCCCCCccc
Q 005229 602 SDNLSRSSLATQYGPGVAHIGGQTQFGLLAGNVSRMHF 639 (707)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 639 (707)
-++.+++-.. ..|.-++.+..-+.....-.+.++.|
T Consensus 1487 ysptspsysp--tspsysptspsysptspsysptspsy 1522 (1605)
T KOG0260|consen 1487 YSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSY 1522 (1605)
T ss_pred CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC
No 482
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=43.00 E-value=5.1e+02 Score=28.75 Aligned_cols=280 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005229 55 QAYQKELRLWKNLIEECYDE-VELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLML 133 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e-~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~ 133 (707)
.+-+..+.+........+.+ -..+..++..+..=-.++..+|+.+..++..+...-..++..+..+..=+.....-+.-
T Consensus 51 ~~sr~l~~e~~~~t~~~q~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~ 130 (421)
T KOG2685|consen 51 RESRLLVNETNALTDKMQRDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAH 130 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 005229 134 CETKL----------ECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLD--------------- 188 (707)
Q Consensus 134 le~el----------~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~--------------- 188 (707)
-+... .++..|++.++.-...+..-++...+++...+..-..++.++..+...+.
T Consensus 131 RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr~ar~~Le~Dl~dK~eA~~ID~~c~~L~~~S~~I 210 (421)
T KOG2685|consen 131 REKRQGIDLVHDEVETELHKEVELIENIQELLKKTLERAEEQLRLNREARQNLERDLSDKQEAYEIDEKCLALNNNSPNI 210 (421)
T ss_pred HhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhheechhhhhhcCCCCCe
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-hHHHhHHHHHHHHHHH
Q 005229 189 ----------------------------SMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPA-SKDKELRFVQQSIEEC 239 (707)
Q Consensus 189 ----------------------------~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie-~~~~el~~~~~~le~l 239 (707)
..+.+...-..-.+....-+.+...++..--..++ .+.+.+...+.....+
T Consensus 211 ~~~p~~~R~~~~~~s~e~W~~fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL 290 (421)
T KOG2685|consen 211 SYKPDPTRVPPNSSSPESWAKFSGDNLDRAERERAASAALREALDQTLRETANDLRTQADAVELAFKKRIRETQDARNKL 290 (421)
T ss_pred eccCCCccCCCCCCCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhh------hhhHHH----HHHHhHHHHHHHHHHHHHHHHHH
Q 005229 240 SKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSL------FQTRTI----VYLKELKEKETHFDSLKKGLEDR 309 (707)
Q Consensus 240 ~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~------le~~~~----~~~~~~~el~~~~~~le~~L~~~ 309 (707)
.-.+.+.-+|+...+..|..+++.|-.+..-++..+-.++. ++-|++ .+..+..++..-+..|+..|.+-
T Consensus 291 ~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA 370 (421)
T KOG2685|consen 291 EWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEA 370 (421)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHhHHHH
Q 005229 310 LQDLELKEREFEKRVKEFELREKEL 334 (707)
Q Consensus 310 ~~eL~~~e~~~~~~~~E~e~~e~~l 334 (707)
...+..+...-.....++..+.-.+
T Consensus 371 ~~~l~~L~~~~~rLe~di~~k~nsL 395 (421)
T KOG2685|consen 371 EDSLKLLVNHRARLERDIAIKANSL 395 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcch
No 483
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=42.61 E-value=3.6e+02 Score=26.96 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 51 INKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ-LAFKESKISSMQTLIEENEGLLKDKEKLYDEVKN 129 (707)
Q Consensus 51 ~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e-l~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ 129 (707)
...+-..-......++.+......+..+++....+=.+|-....+ +.........+-..+.+....++.....+...+.
T Consensus 17 ~e~~~~~le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~ 96 (204)
T PF10368_consen 17 EEQLYDQLEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKE 96 (204)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 130 SLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELN 209 (707)
Q Consensus 130 ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~ 209 (707)
+...+..-+..+..+ ..+..+..+..-+..--.....+-..+...-..=.++=..+..-+-.++.+...+.....-..
T Consensus 97 e~~~~~~~i~ki~d~--~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~iN~~y~ 174 (204)
T PF10368_consen 97 EFKKAKKYIDKIEDE--KLKKQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAINQSYK 174 (204)
T ss_dssp HHTT----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhcChhhHHHhHHHH
Q 005229 210 EIRKYIEELNQDPASKDKELRFV 232 (707)
Q Consensus 210 e~~~ei~~l~~eie~~~~el~~~ 232 (707)
.+.........-...........
T Consensus 175 ~~~~~~~~fn~~t~~yN~~K~~~ 197 (204)
T PF10368_consen 175 EVNKQKEKFNEYTKKYNEEKQDF 197 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.61 E-value=1.2e+02 Score=25.63 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005229 46 SAQEWINKCQA-YQKELRLWKNLIEECYDEVELREKKVGE---AQRSIEEQEKQLAFKESKISSMQTLIEENEGLL 117 (707)
Q Consensus 46 ~~~l~~~~~~~-~~~el~~l~~~i~e~~~e~~~~~~ei~~---le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l 117 (707)
.+-.+...+.. -.....++......+..++.....-+.. +...+++...+|..++.++...+..+..+...+
T Consensus 7 ~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 7 LIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 485
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=42.53 E-value=2.3e+02 Score=27.35 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q 005229 7 EKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVEL-----REKK 81 (707)
Q Consensus 7 ~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~-----~~~e 81 (707)
+...+.+-..+-+...++.....+++..+.+|.-.-=..-.+|..-.+..+..++..|.-+|..++.++.. ...+
T Consensus 60 Edtf~nll~~a~k~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~ 139 (181)
T PF04645_consen 60 EDTFNNLLLQAFKSNAEARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKDLNEE 139 (181)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 005229 82 VGEAQRSIEEQEKQLAFKESKI 103 (707)
Q Consensus 82 i~~le~~i~e~~~el~ele~ei 103 (707)
+..++.++.+..++-+..+.++
T Consensus 140 i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 140 IESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 486
>PTZ00464 SNF-7-like protein; Provisional
Probab=42.37 E-value=3.7e+02 Score=27.05 Aligned_cols=144 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEA--------QRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKE 121 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~l--------e~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e 121 (707)
+...+..++..+..+..+|..+..++....+.+... ...--.+-+.-...++.+..+...+..++..+..++
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie 95 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTE 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 005229 122 KLYDEVK--NSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRL-----HENEVESLEQKLDSMRKQQ 194 (707)
Q Consensus 122 ~e~~~l~--~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~-----~~~eL~~~e~el~~~~~ei 194 (707)
....... .-+......+..+.+++ .-..|+.+..++.+.-...+++...+.. ..-+-.+++.+|+.+..++
T Consensus 96 ~a~~~~~vv~amk~g~kaLK~~~k~i--~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~ 173 (211)
T PTZ00464 96 SVKDTKVQVDAMKQAAKTLKKQFKKL--NVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDM 173 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred H
Q 005229 195 K 195 (707)
Q Consensus 195 ~ 195 (707)
.
T Consensus 174 ~ 174 (211)
T PTZ00464 174 E 174 (211)
T ss_pred h
No 487
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=42.14 E-value=1.6e+02 Score=35.02 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005229 62 RLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFK-------ESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLC 134 (707)
Q Consensus 62 ~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~el-------e~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~l 134 (707)
..+.......+.+++.++++|..++.++.++...+..- ..++..+..++.+++..+..+......+..+++++
T Consensus 552 ~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 552 AELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 005229 135 ETK 137 (707)
Q Consensus 135 e~e 137 (707)
+.+
T Consensus 632 ~~~ 634 (638)
T PRK10636 632 LLE 634 (638)
T ss_pred hhh
No 488
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=42.07 E-value=5.4e+02 Score=28.82 Aligned_cols=124 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHH
Q 005229 88 SIEEQEKQLAFKESKISS-MQTLIEENEGLLKDKEKLY--DEVKNSLMLCETKLECEKKELEL-TQSSIKELSMEFHSEE 163 (707)
Q Consensus 88 ~i~e~~~el~ele~ei~~-l~~~i~e~~~~l~~~e~e~--~~l~~ele~le~el~~~~~Ele~-~e~~i~~l~~ele~~e 163 (707)
++.++...+..+...+.. ++..+......+..+...+ ..-...++.....++.+...+.. ....+...+..+..+.
T Consensus 261 ~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~~a~~~~L~~~~~~L~~l~ 340 (438)
T PRK00286 261 DRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLS 340 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 005229 164 EKL--ELLQGKVRLHENEVESLEQKLDS-MRKQQKKYFDDVELKKRELNEI 211 (707)
Q Consensus 164 ~~l--~~le~el~~~~~eL~~~e~el~~-~~~ei~el~~ele~k~~e~~e~ 211 (707)
.++ ..-...+.....+|+.+...+.. +...++.....++.+...+..+
T Consensus 341 ~rL~~lsP~~~L~r~~qrL~~L~~rL~~a~~~~L~~~~~rL~~l~~rL~~l 391 (438)
T PRK00286 341 QRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQLEAL 391 (438)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 489
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.82 E-value=5.4e+02 Score=28.78 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHH-HHHHh
Q 005229 83 GEAQRSIEEQEKQLAFKESKISSMQT-LIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQS--SIK-ELSME 158 (707)
Q Consensus 83 ~~le~~i~e~~~el~ele~ei~~l~~-~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~--~i~-~l~~e 158 (707)
..+-..+.++.....+.........+ .+..++..+...+.+......+.-.... ..+.+++...+. ... +...+
T Consensus 38 ~~~l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~--~~~q~e~~~~~~~~~~N~e~dke 115 (438)
T COG4487 38 SRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE--LALQDEIAKLEALELLNLEKDKE 115 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHhhHH
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHH
Q 005229 159 FHSEEEKLELLQGKVRL-HENEVESLEQKLDS-MRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSI 236 (707)
Q Consensus 159 le~~e~~l~~le~el~~-~~~eL~~~e~el~~-~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~l 236 (707)
++.++.++.+...++.. ++..++..+.+.+. -+.++-..+.+.+.... +..+..+...++.... ..-+.
T Consensus 116 ~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~s----Le~eR~k~~~ql~~~~-----~~~e~ 186 (438)
T COG4487 116 LELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEES----LELEREKFEEQLHEAN-----LDLEF 186 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHhH-----HHHHH
Q ss_pred HHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhh
Q 005229 237 EECSKEIPGKKEELISKGKTIAECSKEVELKKNQL 271 (707)
Q Consensus 237 e~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~el 271 (707)
-...+........++..+....-....+.....++
T Consensus 187 ~e~~e~~~s~~~~~k~~k~~ae~~~qq~q~~a~~~ 221 (438)
T COG4487 187 KENEEQRESKWAILKKLKRRAELGSQQVQGEALEL 221 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
No 490
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=41.45 E-value=5.5e+02 Score=28.69 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQ-----------------------------------RSIEEQEK 94 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le-----------------------------------~~i~e~~~ 94 (707)
+...+..+...+..++..++....-+..+...+.... .++..++.
T Consensus 83 ~d~~i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~lrr 162 (426)
T smart00806 83 IDDEIDTLQNELDEVKQALESQREAIQRLKERQQNSAANIARPAASPSPVLASSSSAISLANNPDKLNKEQRAELKSLQR 162 (426)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcccCcccccCCCCcccccccccccccCCCcccchhHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-----
Q 005229 95 QLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLM------LCETKLECEKKELELTQSSIKELSMEFHSEE----- 163 (707)
Q Consensus 95 el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele------~le~el~~~~~Ele~~e~~i~~l~~ele~~e----- 163 (707)
+|.-+.+-.......+...-..+...-..++.+..... .++.-...+..+-+.+-.+++.|+.-++.+.
T Consensus 163 dLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~ 242 (426)
T smart00806 163 ELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQ 242 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHhcChhhHHHhHHHH
Q 005229 164 -------EKLELLQGKVRLHENEVESLEQKLDSMRKQ-QKKYFDDVELK---KRELNEIRKYIEELNQDPASKDKELRFV 232 (707)
Q Consensus 164 -------~~l~~le~el~~~~~eL~~~e~el~~~~~e-i~el~~ele~k---~~e~~e~~~ei~~l~~eie~~~~el~~~ 232 (707)
.+++...+++..+.++|..++.-|...+-. -+-++++++.. ++.+.-.+.-+..+..+++.....+.-.
T Consensus 243 RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lV 322 (426)
T smart00806 243 RGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLV 322 (426)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhh
Q 005229 233 QQSIEECSK 241 (707)
Q Consensus 233 ~~~le~l~~ 241 (707)
++-.++-.+
T Consensus 323 eq~~~eQ~k 331 (426)
T smart00806 323 EQCCEEQEK 331 (426)
T ss_pred HHHHHHHhh
No 491
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=41.45 E-value=1.3e+02 Score=31.33 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHhHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEA------------------------QRSIEEQEKQLAFKESKISS 105 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~l------------------------e~~i~e~~~el~ele~ei~~ 105 (707)
+..+|..+..+...+.+.|..++.++...+.++... +..|+.-..+|.+|+.++..
T Consensus 178 a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~ 257 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKRE 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH
Q 005229 106 MQ 107 (707)
Q Consensus 106 l~ 107 (707)
++
T Consensus 258 Lq 259 (259)
T PF08657_consen 258 LQ 259 (259)
T ss_pred cC
No 492
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=41.37 E-value=4.6e+02 Score=27.81 Aligned_cols=120 Identities=12% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 54 CQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISS---MQTLIEENEGLLKDKEKLYDEVKNS 130 (707)
Q Consensus 54 ~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~---l~~~i~e~~~~l~~~e~e~~~l~~e 130 (707)
+++++..=.+|..+|+-++++-+.+++--...=.+++.+...+.+++.-|-. ...-+..+...+..+..+...+.-|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005229 131 L-----------------------------------MLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKV 173 (707)
Q Consensus 131 l-----------------------------------e~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el 173 (707)
| ..++.+++.+.+.|...+..-..-.+=.+.+.-++..+++-+
T Consensus 82 LARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~L 159 (351)
T PF07058_consen 82 LARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGL 159 (351)
T ss_pred HHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 493
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=41.14 E-value=4.1e+02 Score=27.65 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005229 54 CQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLML 133 (707)
Q Consensus 54 ~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~ 133 (707)
++.+.++..+....|++...+... ..+.+-+..+++.+...+..+...+...+.. ........++......++++.+.
T Consensus 143 ~~~~~~~~~ekd~~i~~~~~~~e~-d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~~~ 220 (264)
T PF07246_consen 143 YEELKKEAEEKDQLIKEKTQEREN-DRRNQILSHEISNLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRNESKW 220 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhh-hhHHHHHHHHHHHhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005229 134 CETKLECEKKELELTQSSI 152 (707)
Q Consensus 134 le~el~~~~~Ele~~e~~i 152 (707)
++.++..++.....++..+
T Consensus 221 l~~el~~aK~~~~~~~~~~ 239 (264)
T PF07246_consen 221 LEHELSDAKEDMIRLRNDI 239 (264)
T ss_pred HHHHHHHHHHHHHHHHhcc
No 494
>PRK14011 prefoldin subunit alpha; Provisional
Probab=41.05 E-value=3.1e+02 Score=25.81 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Q 005229 57 YQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLA--------------------------------------- 97 (707)
Q Consensus 57 ~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~--------------------------------------- 97 (707)
+..++..+-..++.+..++..+...+..|..-+.++..-++
T Consensus 1 ~~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy 80 (144)
T PRK14011 1 MNEELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDI 80 (144)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCe
Q ss_pred ----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 98 ----FKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 98 ----ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
..+.-++.+++.++.+++.++.+...++.+...+..+...++..-..+......
T Consensus 81 ~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~~ 138 (144)
T PRK14011 81 YLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQAQ 138 (144)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 495
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=40.93 E-value=1.8e+02 Score=23.89 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHH
Q 005229 68 IEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKE-KLYDEVKNSLMLCETKLECEKKELE 146 (707)
Q Consensus 68 i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e-~e~~~l~~ele~le~el~~~~~Ele 146 (707)
...+..++...-..+..... ++.+..+...+..|.+....|..++-++...- .....+...+.....++..++.++.
T Consensus 1 f~~l~~~i~~~l~~~~~~~~--~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSG--EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred H
Q 005229 147 L 147 (707)
Q Consensus 147 ~ 147 (707)
.
T Consensus 79 ~ 79 (79)
T PF05008_consen 79 K 79 (79)
T ss_dssp H
T ss_pred C
No 496
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=40.81 E-value=6.1e+02 Score=29.04 Aligned_cols=172 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 76 ELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKEL 155 (707)
Q Consensus 76 ~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l 155 (707)
.....-...-++.+...+.-....+.+.+.-.+.......+...++.+....+.+.+..+.+++....+.+...+..+.+
T Consensus 181 ~vv~~l~~~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~~ 260 (489)
T PF05262_consen 181 KVVQELREDKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKKL 260 (489)
T ss_pred HHHHHHhhccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcChhhHHHhHH-HHH
Q 005229 156 SMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDD-VELKKRELNEIRKYIEELNQDPASKDKELR-FVQ 233 (707)
Q Consensus 156 ~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~e-le~k~~e~~e~~~ei~~l~~eie~~~~el~-~~~ 233 (707)
...-+........... +..+++++..+.+.....++...-... .+.+..+...-.....+...+...-+..+. +.+
T Consensus 261 pe~ae~~~~~edek~a--E~~kkE~EKaq~E~~k~~Eea~kake~~aee~k~Eak~~~~~ae~K~~Eaq~er~~iAkD~q 338 (489)
T PF05262_consen 261 PEPAEAQQKKEDEKLA--EEEKKEAEKAQEEAKKKQEEAKKAKEQAAEELKQEAKSQEKEAEKKEEEAQQERKEIAKDQQ 338 (489)
T ss_pred cchhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhchhhHHh
Q 005229 234 QSIEECSKEIPGKKEE 249 (707)
Q Consensus 234 ~~le~l~~El~~l~~E 249 (707)
+.+++...+.......
T Consensus 339 k~~~e~~~e~~~~~e~ 354 (489)
T PF05262_consen 339 KLIEEQKAEKKKKEEE 354 (489)
T ss_pred HHHhhhhhhhhhhhhh
No 497
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=40.68 E-value=3.4e+02 Score=26.06 Aligned_cols=133 Identities=9% Similarity=0.162 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHH
Q 005229 47 AQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKES--------KISSMQTLIEENEGLLK 118 (707)
Q Consensus 47 ~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~--------ei~~l~~~i~e~~~~l~ 118 (707)
+.........++..+..+...+............++......+..+...|..+.. .+-.+......+...+.
T Consensus 10 ~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~ 89 (158)
T PF09486_consen 10 IQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVR 89 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 119 DKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQK 186 (707)
Q Consensus 119 ~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~e 186 (707)
.++.....+...+.....++......|......|+-+... +..+...++.......+.+.+
T Consensus 90 ~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er-------~~~l~r~~ea~~eda~DEEae 150 (158)
T PF09486_consen 90 AAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRER-------IDRLRRAAEAAAEDAQDEEAE 150 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------HHHHHHHHHHhHHHhcchHHH
No 498
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=40.49 E-value=1.2e+02 Score=30.60 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHH
Q 005229 198 FDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKE 263 (707)
Q Consensus 198 ~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~ 263 (707)
+...+.|..+..+++-++.++..+-+.++.+-+.++..-+.|..+..++..+++.+..++.+....
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
No 499
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=40.33 E-value=1.5e+02 Score=23.74 Aligned_cols=58 Identities=31% Similarity=0.441 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 134 CETKLECEKKELELTQSSIKELSMEFHSEE-------EKLELLQGKVRLHENEVESLEQKLDSMR 191 (707)
Q Consensus 134 le~el~~~~~Ele~~e~~i~~l~~ele~~e-------~~l~~le~el~~~~~eL~~~e~el~~~~ 191 (707)
++.++..+..+++.++..|..+...+..-. +-+...+..+..+..++..+...|..+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 500
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=40.30 E-value=4e+02 Score=28.46 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=0.0
Q ss_pred chHHHHHHHhhhhh-hHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 2 VSWRVEKIMGLGQK-RIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREK 80 (707)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ 80 (707)
|+-.-+..+-.+.+ .+.+++..+...---..++-.+-....+.. ..+++.|.+...++..-..+...+.+
T Consensus 105 ~~iD~EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqV---------DtLKD~LeE~eeqLaeS~Re~eek~k 175 (405)
T KOG2010|consen 105 SLIDPEASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQV---------DTLKDVLEEQEEQLAESYRENEEKSK 175 (405)
T ss_pred cccChHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005229 81 KVGEAQRSIEEQEKQLAFKESKISSMQTLIEE 112 (707)
Q Consensus 81 ei~~le~~i~e~~~el~ele~ei~~l~~~i~e 112 (707)
++..+..-+.-+...+.+++..|......|++
T Consensus 176 E~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 176 ELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!