Query 005229
Match_columns 707
No_of_seqs 415 out of 1390
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 19:16:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.2E-23 4.1E-28 166.6 5.2 61 638-698 2-63 (63)
2 1c1g_A Tropomyosin; contractIl 99.5 1E-09 3.5E-14 112.5 42.4 42 54-95 8-49 (284)
3 1i84_S Smooth muscle myosin he 99.3 1.3E-12 4.5E-17 161.1 8.4 81 53-133 858-938 (1184)
4 3na7_A HP0958; flagellar bioge 98.2 9.8E-05 3.4E-09 75.3 20.4 24 194-217 92-115 (256)
5 3vkg_A Dynein heavy chain, cyt 97.8 0.0038 1.3E-07 82.6 28.4 72 164-235 2014-2085(3245)
6 3vkg_A Dynein heavy chain, cyt 97.7 0.0061 2.1E-07 80.7 29.5 88 169-256 2012-2099(3245)
7 2efr_A General control protein 97.7 0.02 6.8E-07 52.9 24.4 29 166-194 100-128 (155)
8 2efr_A General control protein 97.7 0.034 1.2E-06 51.4 25.2 105 114-218 41-145 (155)
9 2v71_A Nuclear distribution pr 97.7 0.0075 2.6E-07 57.5 21.1 18 96-113 19-36 (189)
10 3o0z_A RHO-associated protein 97.4 0.067 2.3E-06 49.7 23.0 16 229-244 145-160 (168)
11 3o0z_A RHO-associated protein 97.3 0.042 1.4E-06 51.1 20.7 50 63-112 10-59 (168)
12 2dfs_A Myosin-5A; myosin-V, in 96.9 0.016 5.4E-07 70.4 17.9 34 175-208 981-1014(1080)
13 4gkw_A Spindle assembly abnorm 96.7 0.27 9.3E-06 43.0 21.7 56 179-234 99-154 (167)
14 4gkw_A Spindle assembly abnorm 96.6 0.32 1.1E-05 42.5 20.2 15 166-180 69-83 (167)
15 2fxo_A Myosin heavy chain, car 96.4 0.41 1.4E-05 42.9 19.5 42 176-217 81-122 (129)
16 3u59_A Tropomyosin beta chain; 96.2 0.21 7.1E-06 42.9 15.5 79 73-151 16-94 (101)
17 2b9c_A Striated-muscle alpha t 96.0 0.13 4.4E-06 47.3 13.6 41 118-158 69-109 (147)
18 2ocy_A RAB guanine nucleotide 95.2 1.9 6.3E-05 39.6 21.0 26 195-220 118-143 (154)
19 2xzr_A Immunoglobulin-binding 94.2 2 6.8E-05 35.5 14.4 55 173-227 50-104 (114)
20 3ol1_A Vimentin; structural ge 94.2 1.3 4.3E-05 39.2 14.1 40 57-96 18-57 (119)
21 3tnu_B Keratin, type II cytosk 93.8 1.6 5.3E-05 39.1 14.3 14 173-186 84-97 (129)
22 3tnu_A Keratin, type I cytoske 93.6 1.3 4.5E-05 39.7 13.4 18 172-189 85-102 (131)
23 1deq_A Fibrinogen (alpha chain 93.4 1.5 5.1E-05 45.7 14.9 41 97-137 116-156 (390)
24 2eqb_B RAB guanine nucleotide 93.2 2.9 0.0001 35.1 13.7 59 61-119 7-65 (97)
25 3ol1_A Vimentin; structural ge 92.9 4.5 0.00015 35.5 16.4 39 52-90 20-58 (119)
26 3ghg_A Fibrinogen alpha chain; 92.7 2.7 9.2E-05 45.6 16.1 24 178-201 131-154 (562)
27 2v4h_A NF-kappa-B essential mo 92.5 2.8 9.5E-05 35.8 12.8 38 103-140 64-101 (110)
28 3q8t_A Beclin-1; autophagy, AT 92.1 4.8 0.00016 33.9 14.9 37 57-93 9-45 (96)
29 3tnu_B Keratin, type II cytosk 91.8 2.6 8.8E-05 37.7 12.8 74 241-317 29-102 (129)
30 3tnu_A Keratin, type I cytoske 91.7 2.4 8.2E-05 38.0 12.5 75 240-317 30-104 (131)
31 2e7s_A RAB guanine nucleotide 90.8 1.7 5.8E-05 38.9 10.1 29 228-256 97-125 (135)
32 2v66_B Nuclear distribution pr 90.7 7.6 0.00026 33.5 15.7 52 289-340 55-106 (111)
33 2v4h_A NF-kappa-B essential mo 90.6 4.1 0.00014 34.8 11.8 38 110-147 64-101 (110)
34 2e7s_A RAB guanine nucleotide 90.1 1 3.4E-05 40.3 8.0 11 174-184 70-80 (135)
35 2jee_A YIIU; FTSZ, septum, coi 90.0 4.5 0.00015 32.8 11.1 10 136-145 13-22 (81)
36 3ghg_A Fibrinogen alpha chain; 89.6 7.6 0.00026 42.2 15.7 26 300-325 134-159 (562)
37 1l8d_A DNA double-strand break 88.8 7.5 0.00026 33.4 12.9 34 62-95 6-39 (112)
38 3mq7_A Bone marrow stromal ant 88.7 4.4 0.00015 34.9 10.5 17 19-35 22-38 (121)
39 3igm_B PF14_0633 protein; AP2 88.5 0.19 6.6E-06 39.9 2.0 45 634-679 3-55 (77)
40 3mq7_A Bone marrow stromal ant 88.2 5.6 0.00019 34.2 10.8 30 215-244 73-102 (121)
41 1m1j_B Fibrinogen beta chain; 87.7 17 0.00057 39.5 17.2 9 639-647 436-444 (464)
42 2no2_A HIP-I, huntingtin-inter 86.8 14 0.00048 31.7 16.1 37 50-86 6-42 (107)
43 3l4q_C Phosphatidylinositol 3- 85.8 22 0.00077 33.0 15.6 40 75-114 19-58 (170)
44 1m1j_B Fibrinogen beta chain; 85.8 28 0.00094 37.8 17.6 25 166-190 170-194 (464)
45 3jsv_C NF-kappa-B essential mo 85.7 8.6 0.00029 31.9 10.4 64 74-137 10-76 (94)
46 3s4r_A Vimentin; alpha-helix, 85.0 16 0.00054 30.5 12.5 29 55-83 12-40 (93)
47 1m1j_A Fibrinogen alpha subuni 83.5 31 0.0011 36.8 16.1 6 517-522 350-355 (491)
48 1sjj_A Actinin; 3-helix bundle 83.4 76 0.0026 37.2 28.9 61 460-526 770-833 (863)
49 3l4q_C Phosphatidylinositol 3- 83.4 29 0.00099 32.3 15.7 26 249-274 90-115 (170)
50 3kbt_A Beta-I spectrin, spectr 82.2 46 0.0016 33.7 35.7 55 19-73 8-65 (326)
51 2i1j_A Moesin; FERM, coiled-co 81.9 2 6.9E-05 48.4 7.1 26 205-230 425-450 (575)
52 3a7p_A Autophagy protein 16; c 80.9 32 0.0011 31.2 13.4 19 121-139 102-120 (152)
53 3mq9_A Bone marrow stromal ant 80.4 34 0.0012 37.0 16.4 16 219-234 449-464 (471)
54 1x8y_A Lamin A/C; structural p 79.9 18 0.00061 29.7 10.4 29 169-197 33-61 (86)
55 3s4r_A Vimentin; alpha-helix, 79.7 25 0.00087 29.2 13.3 34 60-93 10-43 (93)
56 2zqm_A Prefoldin beta subunit 79.5 29 0.00099 29.7 13.7 28 124-151 15-42 (117)
57 1fxk_A Prefoldin; archaeal pro 78.2 25 0.00087 29.6 11.5 25 125-149 11-35 (107)
58 3nmd_A CGMP dependent protein 77.5 11 0.00039 29.7 7.9 27 186-212 34-60 (72)
59 1sjj_A Actinin; 3-helix bundle 77.3 1.2E+02 0.004 35.5 29.9 23 19-41 374-396 (863)
60 2no2_A HIP-I, huntingtin-inter 76.7 35 0.0012 29.2 16.2 28 64-91 13-40 (107)
61 1x8y_A Lamin A/C; structural p 76.6 15 0.0005 30.2 8.9 52 179-230 29-80 (86)
62 1gk4_A Vimentin; intermediate 74.7 33 0.0011 27.9 11.7 30 168-197 30-59 (84)
63 3hhm_B NISH2 P85alpha; PI3KCA, 73.7 94 0.0032 32.7 16.7 32 84-115 144-175 (373)
64 1gk4_A Vimentin; intermediate 72.1 36 0.0012 27.7 10.2 9 219-227 67-75 (84)
65 3edv_A Spectrin beta chain, br 71.0 91 0.0031 31.4 31.2 12 299-310 307-318 (323)
66 3cve_A Homer protein homolog 1 70.7 37 0.0013 26.8 10.8 19 193-211 43-61 (72)
67 2w83_C C-JUN-amino-terminal ki 70.5 38 0.0013 26.8 9.5 63 52-114 9-71 (77)
68 3r6n_A Desmoplakin; spectrin r 68.7 1.3E+02 0.0046 32.4 30.6 24 438-461 335-358 (450)
69 2pms_C Pneumococcal surface pr 68.6 15 0.00051 32.2 7.3 8 264-271 105-112 (125)
70 1hci_A Alpha-actinin 2; triple 68.4 1.3E+02 0.0045 32.2 29.0 7 331-337 419-425 (476)
71 1m1j_C Fibrinogen gamma chain; 68.3 76 0.0026 33.8 14.4 12 639-650 364-376 (409)
72 1u4q_A Spectrin alpha chain, b 67.9 1E+02 0.0036 30.9 38.3 22 20-41 8-29 (322)
73 1m1j_C Fibrinogen gamma chain; 67.9 94 0.0032 33.1 15.0 22 170-191 111-132 (409)
74 2pms_C Pneumococcal surface pr 66.3 24 0.00083 30.9 8.2 14 23-36 14-27 (125)
75 3ghg_B Fibrinogen beta chain; 64.0 1.2E+02 0.004 32.7 14.7 21 164-184 170-190 (461)
76 3kbt_A Beta-I spectrin, spectr 63.0 1.3E+02 0.0044 30.2 32.5 23 292-314 298-320 (326)
77 1m1j_A Fibrinogen alpha subuni 62.5 1.7E+02 0.0057 31.3 16.2 20 203-222 136-155 (491)
78 3tul_A Cell invasion protein S 59.5 72 0.0025 28.5 10.0 52 166-217 71-125 (158)
79 2k48_A Nucleoprotein; viral pr 59.1 62 0.0021 27.3 9.0 37 9-45 36-72 (107)
80 3efg_A Protein SLYX homolog; x 58.4 33 0.0011 27.6 7.2 12 82-93 23-34 (78)
81 1hci_A Alpha-actinin 2; triple 58.1 2E+02 0.0067 30.7 36.2 56 17-72 133-192 (476)
82 3ghg_B Fibrinogen beta chain; 57.4 1.8E+02 0.0061 31.3 14.7 9 639-647 432-440 (461)
83 2nrj_A HBL B protein; enteroto 57.1 1.8E+02 0.0063 30.1 20.8 96 226-332 225-325 (346)
84 2nrj_A HBL B protein; enteroto 57.0 1.8E+02 0.0063 30.1 25.7 22 293-314 274-295 (346)
85 2xu6_A MDV1 coiled coil; prote 55.2 75 0.0026 25.0 8.4 55 53-107 15-69 (72)
86 1u3e_M HNH homing endonuclease 53.5 3.3 0.00011 38.9 0.5 38 639-679 109-146 (174)
87 3iox_A AGI/II, PA; alpha helix 53.0 2.5E+02 0.0086 30.4 15.9 15 631-645 418-433 (497)
88 1go4_E MAD1 (mitotic arrest de 52.5 64 0.0022 27.1 8.2 25 192-216 19-43 (100)
89 1quu_A Human skeletal muscle a 52.0 1.7E+02 0.0059 28.2 19.1 24 166-189 96-119 (250)
90 1go4_E MAD1 (mitotic arrest de 51.6 22 0.00077 30.0 5.2 24 63-86 16-39 (100)
91 3haj_A Human pacsin2 F-BAR; pa 51.5 2.6E+02 0.009 30.2 23.8 27 248-274 185-211 (486)
92 3hhm_B NISH2 P85alpha; PI3KCA, 50.6 2.4E+02 0.0083 29.5 17.9 56 141-196 203-258 (373)
93 3efg_A Protein SLYX homolog; x 49.6 35 0.0012 27.4 6.0 50 232-281 12-61 (78)
94 3qne_A Seryl-tRNA synthetase, 49.5 64 0.0022 35.2 10.0 28 128-155 77-104 (485)
95 3ghg_C Fibrinogen gamma chain; 49.3 2E+02 0.007 30.5 13.5 12 639-650 364-376 (411)
96 1wle_A Seryl-tRNA synthetase; 48.6 95 0.0032 34.1 11.3 31 126-156 120-150 (501)
97 2a01_A Apolipoprotein A-I; fou 48.0 2.1E+02 0.0071 28.0 13.2 9 215-223 134-142 (243)
98 1wle_A Seryl-tRNA synthetase; 47.9 1.7E+02 0.0057 32.1 13.1 30 123-152 124-153 (501)
99 2rlw_A PLNF; toxin; NMR {Lacto 47.8 3.1 0.00011 26.4 -0.4 24 385-408 10-33 (34)
100 3c9i_A Tail needle protein GP2 47.5 1.9E+02 0.0064 27.4 13.4 20 137-156 127-146 (242)
101 1deb_A APC protein, adenomatou 46.9 77 0.0026 22.9 6.5 28 205-232 16-43 (54)
102 3ghg_C Fibrinogen gamma chain; 45.6 2.4E+02 0.0081 30.0 13.3 43 144-186 92-134 (411)
103 3edv_A Spectrin beta chain, br 45.4 2.4E+02 0.0084 28.1 41.3 53 19-71 10-66 (323)
104 2dq0_A Seryl-tRNA synthetase; 45.4 70 0.0024 34.7 9.6 28 128-155 75-102 (455)
105 1gmj_A ATPase inhibitor; coile 45.0 94 0.0032 25.2 7.7 22 91-112 55-76 (84)
106 2p22_C Protein SRN2; endosome, 45.0 2E+02 0.007 27.1 14.4 51 224-274 132-184 (192)
107 1u4q_A Spectrin alpha chain, b 44.6 2.5E+02 0.0085 27.9 31.0 18 295-312 299-316 (322)
108 2b5u_A Colicin E3; high resolu 44.2 3.4E+02 0.012 29.4 22.5 17 118-134 345-361 (551)
109 2dq0_A Seryl-tRNA synthetase; 44.2 1.8E+02 0.0063 31.3 12.7 10 505-514 328-337 (455)
110 3qne_A Seryl-tRNA synthetase, 44.2 1.6E+02 0.0054 32.1 12.0 21 127-147 83-103 (485)
111 3swy_A Cyclic nucleotide-gated 43.8 87 0.003 22.4 6.8 24 292-315 21-44 (46)
112 4fi5_A Nucleoprotein; structur 43.6 1.2E+02 0.0041 25.8 8.5 34 12-45 26-59 (113)
113 3trt_A Vimentin; cytoskeleton, 43.5 66 0.0022 25.4 6.8 15 99-113 54-68 (77)
114 3r6n_A Desmoplakin; spectrin r 43.3 3.4E+02 0.012 29.1 28.3 24 22-45 9-32 (450)
115 2ic6_A Nucleocapsid protein; h 42.8 1.3E+02 0.0044 24.1 8.6 36 10-45 7-42 (78)
116 4etp_A Kinesin-like protein KA 42.7 40 0.0014 36.0 7.0 10 398-407 132-141 (403)
117 4etp_A Kinesin-like protein KA 42.6 58 0.002 34.7 8.2 12 211-222 50-61 (403)
118 1ses_A Seryl-tRNA synthetase; 42.0 50 0.0017 35.4 7.7 10 505-514 303-312 (421)
119 2ic9_A Nucleocapsid protein; h 41.7 1.5E+02 0.0052 24.6 8.6 36 10-45 7-42 (96)
120 1ses_A Seryl-tRNA synthetase; 41.1 80 0.0027 33.8 9.1 29 127-155 69-97 (421)
121 3tul_A Cell invasion protein S 40.7 2E+02 0.0069 25.7 11.4 12 171-182 107-118 (158)
122 3k29_A Putative uncharacterize 40.5 2.2E+02 0.0075 26.1 22.2 51 137-187 72-122 (169)
123 2ke4_A CDC42-interacting prote 40.4 1E+02 0.0035 25.8 7.7 28 254-281 61-88 (98)
124 2q6q_A Spindle POLE BODY compo 40.2 1.3E+02 0.0043 23.3 8.3 50 258-307 6-55 (74)
125 2y3a_B Phosphatidylinositol 3- 37.1 3.5E+02 0.012 27.4 15.8 57 137-193 91-147 (302)
126 1lwu_C Fibrinogen gamma chain; 35.9 76 0.0026 32.7 7.5 9 639-647 284-292 (323)
127 2y3a_B Phosphatidylinositol 3- 35.5 2E+02 0.007 29.1 10.6 46 167-212 93-138 (302)
128 4ad8_A DNA repair protein RECN 35.3 4.6E+02 0.016 28.3 19.5 12 441-452 503-514 (517)
129 3ljm_A Coil Ser L9C; de novo d 34.9 69 0.0024 19.9 4.1 25 291-315 2-26 (31)
130 3cl3_D NF-kappa-B essential mo 34.9 1.6E+02 0.0056 25.7 8.1 48 55-102 5-52 (130)
131 3ni0_A Bone marrow stromal ant 34.6 1.9E+02 0.0067 23.8 10.3 8 190-197 44-51 (99)
132 2xv5_A Lamin-A/C; structural p 34.4 98 0.0034 24.5 6.3 15 174-188 15-29 (74)
133 3edu_A Beta-I spectrin, spectr 34.3 2.9E+02 0.01 25.8 19.5 25 237-261 143-167 (218)
134 3swf_A CGMP-gated cation chann 33.1 1.5E+02 0.0052 23.4 7.0 24 292-315 23-46 (74)
135 2a01_A Apolipoprotein A-I; fou 32.6 3.6E+02 0.012 26.2 12.6 9 151-159 133-141 (243)
136 3uun_A Dystrophin; triple heli 32.4 2.1E+02 0.0072 23.6 12.2 13 175-187 47-59 (119)
137 1lwu_C Fibrinogen gamma chain; 31.7 1E+02 0.0035 31.7 7.6 25 127-151 31-55 (323)
138 4fi5_A Nucleoprotein; structur 31.4 2.4E+02 0.0084 24.0 10.0 16 132-147 25-40 (113)
139 3lss_A Seryl-tRNA synthetase; 31.2 2.1E+02 0.0071 31.2 10.4 25 131-155 113-137 (484)
140 3uul_A Utrophin; spectrin repe 30.9 2.3E+02 0.0077 23.4 13.4 24 292-315 87-110 (118)
141 2bsg_A Fibritin; viral protein 30.3 5.5E+02 0.019 27.7 13.1 81 7-91 53-133 (487)
142 3edu_A Beta-I spectrin, spectr 30.2 3.4E+02 0.012 25.3 17.5 20 255-274 147-166 (218)
143 3cl3_D NF-kappa-B essential mo 30.1 96 0.0033 27.1 5.9 34 113-146 14-47 (130)
144 2xs1_A Programmed cell death 6 30.0 6.6E+02 0.022 28.5 24.7 74 17-93 457-530 (704)
145 2bn8_A CEDA, cell division act 30.0 40 0.0014 26.3 3.1 40 636-678 37-76 (87)
146 1kd8_B GABH BLL, GCN4 acid bas 28.3 1.3E+02 0.0045 20.1 4.9 18 88-105 9-26 (36)
147 1jvr_A HTLV-II MA, MA, human T 27.7 2.9E+02 0.0099 23.7 9.5 66 468-533 20-97 (137)
148 2dq3_A Seryl-tRNA synthetase; 27.5 1.1E+02 0.0038 32.7 7.5 10 505-514 307-316 (425)
149 3iyk_A VP5; icosahedral virus; 27.5 6.1E+02 0.021 27.4 19.3 18 166-183 191-208 (526)
150 3jtz_A Integrase; four strande 26.1 34 0.0012 28.1 2.3 38 648-685 36-75 (88)
151 2wt7_B Transcription factor MA 25.8 2.8E+02 0.0095 22.8 11.0 20 51-70 20-39 (90)
152 3u06_A Protein claret segregat 25.2 1.6E+02 0.0054 31.4 8.0 10 398-407 130-139 (412)
153 2qyw_A Vesicle transport throu 25.2 3E+02 0.01 22.9 11.8 15 54-68 17-31 (102)
154 3lss_A Seryl-tRNA synthetase; 25.0 2.3E+02 0.008 30.8 9.4 10 505-514 347-356 (484)
155 2dq3_A Seryl-tRNA synthetase; 24.7 1.3E+02 0.0043 32.3 7.2 28 189-216 34-61 (425)
156 1deb_A APC protein, adenomatou 24.3 2E+02 0.007 20.7 7.8 36 178-213 10-45 (54)
157 1z1b_A Integrase; protein-DNA 23.9 63 0.0022 32.8 4.6 40 641-684 15-54 (356)
158 2l5g_B Putative uncharacterize 23.2 1.9E+02 0.0066 20.1 5.3 14 55-68 12-25 (42)
159 2avr_X Adhesion A; antiparalle 23.0 3.7E+02 0.013 23.2 14.6 10 55-64 12-21 (119)
160 3u06_A Protein claret segregat 22.6 1.3E+02 0.0046 31.9 6.8 14 519-532 320-333 (412)
161 1s94_A S-syntaxin; three helix 22.4 4.5E+02 0.015 24.0 10.4 13 315-327 130-142 (180)
162 3he4_A Synzip6; heterodimeric 22.2 2.1E+02 0.0071 20.1 5.6 27 66-92 24-50 (56)
163 1gk6_A Vimentin; intermediate 22.2 1.9E+02 0.0064 21.6 5.7 22 175-196 11-32 (59)
164 1nfn_A Apolipoprotein E3; lipi 22.0 4.9E+02 0.017 24.3 10.7 14 61-74 37-50 (191)
165 3igm_B PF14_0633 protein; AP2 22.0 57 0.002 25.9 2.7 25 446-470 44-68 (77)
166 2wvr_A Geminin; DNA replicatio 21.6 3.9E+02 0.013 25.2 8.8 40 71-110 113-152 (209)
167 1zxa_A CGMP-dependent protein 21.4 1.2E+02 0.0042 23.5 4.5 40 68-107 13-52 (67)
168 1vcs_A Vesicle transport throu 21.4 3.5E+02 0.012 22.5 7.9 72 57-128 10-94 (102)
169 3zx6_A HAMP, methyl-accepting 21.3 6.5E+02 0.022 25.5 34.1 230 50-282 43-303 (341)
170 3aco_A Pacsin2, protein kinase 20.4 6.8E+02 0.023 25.3 22.4 27 248-274 192-218 (350)
171 4dk0_A Putative MACA; alpha-ha 20.2 4.3E+02 0.015 26.8 10.3 22 137-158 130-151 (369)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.88 E-value=1.2e-23 Score=166.62 Aligned_cols=61 Identities=75% Similarity=1.300 Sum_probs=57.7
Q ss_pred cceeeeEcCCCceEEEEecCCC-CcccccCCCCcHHHHHHHHHHHHHHccCCCCCCCCCCcc
Q 005229 638 HFRGVRQRPWGKWAAEIRDPKK-AARIWLGTFDTAEAAALAYDEAALRFKGRKAKLNFPERV 698 (707)
Q Consensus 638 ~~rGV~~~~~g~w~a~i~~~~~-~~~~~lG~f~t~e~Aa~ayd~aa~~~~g~~~~~nfp~~~ 698 (707)
+||||++++||||+|+|+++.+ |+++|||||+|+|+||+|||.||+.++|.++.+|||.++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 6999998899999999999974 789999999999999999999999999999999999874
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.49 E-value=1e-09 Score=112.47 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 54 CQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 54 ~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e 95 (707)
+..++.++..+...+..+..++..+...+..++..+......
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 49 (284)
T 1c1g_A 8 MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKK 49 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.32 E-value=1.3e-12 Score=161.12 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005229 53 KCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLM 132 (707)
Q Consensus 53 ~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele 132 (707)
++..++.++..++..+..++..+..++.++..++.++..+..++......+..+...+..+...+..++..+..++.+++
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443333333333333333333333333333333333333
Q ss_pred H
Q 005229 133 L 133 (707)
Q Consensus 133 ~ 133 (707)
.
T Consensus 938 e 938 (1184)
T 1i84_S 938 E 938 (1184)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.20 E-value=9.8e-05 Score=75.31 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 194 QKKYFDDVELKKRELNEIRKYIEE 217 (707)
Q Consensus 194 i~el~~ele~k~~e~~e~~~ei~~ 217 (707)
++.+..+++....++..++.++..
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.78 E-value=0.0038 Score=82.56 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHH
Q 005229 164 EKLELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQS 235 (707)
Q Consensus 164 ~~l~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~ 235 (707)
.++..++.++...+.+|..++.++.+++..+..++.+.+....+...++.+++..+.+++....-+..+..+
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~E 2085 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSE 2085 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 445555555555555555555555555555555555555555555555555544444444444444444333
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.75 E-value=0.0061 Score=80.67 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHH
Q 005229 169 LQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKE 248 (707)
Q Consensus 169 le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~ 248 (707)
+++++..++.++...+.++...+.++.+++..+..++.+++....+.+.++.+++..+..++.+++-+..|..|.....+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred hhhhhhhh
Q 005229 249 ELISKGKT 256 (707)
Q Consensus 249 Ele~l~~~ 256 (707)
.++.++.+
T Consensus 2092 ~~~~l~~~ 2099 (3245)
T 3vkg_A 2092 QSENFNTQ 2099 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 7
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.72 E-value=0.02 Score=52.90 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSMRKQQ 194 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~~~ei 194 (707)
+..++..++.++.+|...+.....+..++
T Consensus 100 v~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 100 VTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.68 E-value=0.034 Score=51.39 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 114 EGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQ 193 (707)
Q Consensus 114 ~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~e 193 (707)
+..+..++.++..+...+..++..-......-+..+.+|..+...+...+.+....+..+..++..|..++.++..-...
T Consensus 41 E~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek 120 (155)
T 2efr_A 41 EGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444444444444444445555555555555555555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 194 QKKYFDDVELKKRELNEIRKYIEEL 218 (707)
Q Consensus 194 i~el~~ele~k~~e~~e~~~ei~~l 218 (707)
+..+..++...-.++..+...+..+
T Consensus 121 ~~~i~~eLd~tl~el~~~~~~~~~~ 145 (155)
T 2efr_A 121 YKAISEEMKQLEDKVEELLSKNYHL 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH
Confidence 4444444444444444443333333
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.66 E-value=0.0075 Score=57.48 Aligned_cols=18 Identities=6% Similarity=-0.106 Sum_probs=6.5
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 005229 96 LAFKESKISSMQTLIEEN 113 (707)
Q Consensus 96 l~ele~ei~~l~~~i~e~ 113 (707)
...+...+..++..+.++
T Consensus 19 ~~~~~q~~~~le~El~EF 36 (189)
T 2v71_A 19 SMKYKQSFQEARDELVEF 36 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.39 E-value=0.067 Score=49.72 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhhhch
Q 005229 229 LRFVQQSIEECSKEIP 244 (707)
Q Consensus 229 l~~~~~~le~l~~El~ 244 (707)
+..++.++++=..+|.
T Consensus 145 LKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 145 LKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444443333333
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.31 E-value=0.042 Score=51.05 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005229 63 LWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEE 112 (707)
Q Consensus 63 ~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e 112 (707)
.++.++.+++..++.-..-...+.+...++...+..++..+.+++..+..
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~ 59 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRI 59 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333333333333333333333333333333333
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.92 E-value=0.016 Score=70.45 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 175 LHENEVESLEQKLDSMRKQQKKYFDDVELKKREL 208 (707)
Q Consensus 175 ~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~ 208 (707)
.++.++..++.++..+++++..+.++.+.+++.+
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333
No 13
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=96.71 E-value=0.27 Score=42.97 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHH
Q 005229 179 EVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQ 234 (707)
Q Consensus 179 eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~ 234 (707)
+|.+++..+.+.+.-++.++..+-.+++++..-..+..+...-++.+.-+-+.+.+
T Consensus 99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vke 154 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKE 154 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence 34444445555555555555555555555555555555444444444333333333
No 14
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=96.61 E-value=0.32 Score=42.50 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEV 180 (707)
Q Consensus 166 l~~le~el~~~~~eL 180 (707)
+..++..++.....|
T Consensus 69 ~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 69 LGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHH
Confidence 334444444433333
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.43 E-value=0.41 Score=42.94 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 176 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEE 217 (707)
Q Consensus 176 ~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~ 217 (707)
++..|.++...+.........+......++.++.++...+..
T Consensus 81 Le~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 81 LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444444443
No 16
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.22 E-value=0.21 Score=42.88 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 73 DEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 73 ~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
.+......+...++.++..........+.++..+++.+..++..+...+..+......++..+........++..+..+
T Consensus 16 ~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRr 94 (101)
T 3u59_A 16 LDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333333333333333333333333333
No 17
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=95.96 E-value=0.13 Score=47.29 Aligned_cols=41 Identities=32% Similarity=0.533 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 118 KDKEKLYDEVKNSLMLCETKLECEKKELELTQSSIKELSME 158 (707)
Q Consensus 118 ~~~e~e~~~l~~ele~le~el~~~~~Ele~~e~~i~~l~~e 158 (707)
+.....+..+.-.+..++.+++......+..+..+..+..+
T Consensus 69 eeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEee 109 (147)
T 2b9c_A 69 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEE 109 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443333333
No 18
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.20 E-value=1.9 Score=39.60 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005229 195 KKYFDDVELKKRELNEIRKYIEELNQ 220 (707)
Q Consensus 195 ~el~~ele~k~~e~~e~~~ei~~l~~ 220 (707)
+.+...+..++..+..++.++..+..
T Consensus 118 ~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 118 KRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444433333
No 19
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=94.21 E-value=2 Score=35.46 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHH
Q 005229 173 VRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDK 227 (707)
Q Consensus 173 l~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~ 227 (707)
+......+......++.++.+|++..++++....+..++-.++.-+++++.++.+
T Consensus 50 iaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 50 IAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444445555556666666666666666666667766666666666655443
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.17 E-value=1.3 Score=39.16 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 57 YQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQL 96 (707)
Q Consensus 57 ~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el 96 (707)
+..++.++..+|.....+...+.-++..++..++.|+...
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~Ky 57 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555565555555555555555555555555443
No 21
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.80 E-value=1.6 Score=39.12 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 005229 173 VRLHENEVESLEQK 186 (707)
Q Consensus 173 l~~~~~eL~~~e~e 186 (707)
+..++.+|...+.+
T Consensus 84 i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 84 LAELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHH
Confidence 33333333333333
No 22
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.60 E-value=1.3 Score=39.74 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005229 172 KVRLHENEVESLEQKLDS 189 (707)
Q Consensus 172 el~~~~~eL~~~e~el~~ 189 (707)
.+..++.+|...+.++..
T Consensus 85 ~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 23
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=93.41 E-value=1.5 Score=45.74 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=16.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005229 97 AFKESKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETK 137 (707)
Q Consensus 97 ~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~e 137 (707)
.+++.+|..+++.|...-..|+.++..++.+..+|..|+.+
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333444444333333333333333
No 24
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.18 E-value=2.9 Score=35.06 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005229 61 LRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKD 119 (707)
Q Consensus 61 l~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~ 119 (707)
++.+...+..+..+......++..|..++.+-...-...+.....+..++++++..|-.
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555566555555555555566666666666666655533
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.93 E-value=4.5 Score=35.52 Aligned_cols=39 Identities=5% Similarity=0.058 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 52 NKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIE 90 (707)
Q Consensus 52 ~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~ 90 (707)
..|..++..+..+...-..+..++..+...+..+....+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444444444444444444444444444443333
No 26
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.70 E-value=2.7 Score=45.57 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 178 NEVESLEQKLDSMRKQQKKYFDDV 201 (707)
Q Consensus 178 ~eL~~~e~el~~~~~ei~el~~el 201 (707)
..|..++.-|..+..+|+.|+.+|
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333
No 27
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.53 E-value=2.8 Score=35.84 Aligned_cols=38 Identities=5% Similarity=0.102 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005229 103 ISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETKLEC 140 (707)
Q Consensus 103 i~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~el~~ 140 (707)
|.-++..+.-+......-....+.+..+.+.+..++..
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~ 101 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHH
Confidence 44444444444444444444444444444444443333
No 28
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=92.12 E-value=4.8 Score=33.92 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 57 YQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQE 93 (707)
Q Consensus 57 ~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~ 93 (707)
+..++..+...-..+..++..++++-..+..+|....
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le 45 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQ 45 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 29
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.80 E-value=2.6 Score=37.67 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=33.6
Q ss_pred hhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 241 KEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKE 317 (707)
Q Consensus 241 ~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e 317 (707)
..+...+.|+.+++..+..+.-+++..+.....++..+...+.+ +..+++.....+..++..|.....++....
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql 102 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR---GELALKDARNKLAELEEALQKAKQDMARLL 102 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555544444 334444444445555555554444444443
No 30
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.70 E-value=2.4 Score=37.99 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=31.1
Q ss_pred hhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 240 SKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLEDRLQDLELKE 317 (707)
Q Consensus 240 ~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~~~~~eL~~~e 317 (707)
...+...+.|+.+++..+..+.-+++..+.....++..+...+.+ +..+++.....+..++..|.....++....
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR---YCMQLAQIQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555555555555555555555554444 334444444444555555554444444443
No 31
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.75 E-value=1.7 Score=38.86 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHhhhchhhHHhhhhhhhh
Q 005229 228 ELRFVQQSIEECSKEIPGKKEELISKGKT 256 (707)
Q Consensus 228 el~~~~~~le~l~~El~~l~~Ele~l~~~ 256 (707)
+...++.+.+.+..++...+.-++.++.+
T Consensus 97 ~~~~~e~r~~~L~~ql~e~e~ll~~lq~Q 125 (135)
T 2e7s_A 97 EKYAIEILNKRLTEQLREKDMLLDTLTLQ 125 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333333
No 32
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.73 E-value=7.6 Score=33.52 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=32.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHH
Q 005229 289 LKELKEKETHFDSLKKGLEDRLQDLELKEREFEKRVKEFELREKELDSIRKA 340 (707)
Q Consensus 289 ~~~~~el~~~~~~le~~L~~~~~eL~~~e~~~~~~~~E~e~~e~~l~~~~~~ 340 (707)
...+.+|+..=+.++..-......|..++..+..++..--..+.++++.+.+
T Consensus 55 ~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L 106 (111)
T 2v66_B 55 HKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESL 106 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555666666666667777777777777766777777765544
No 33
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.62 E-value=4.1 Score=34.79 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005229 110 IEENEGLLKDKEKLYDEVKNSLMLCETKLECEKKELEL 147 (707)
Q Consensus 110 i~e~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele~ 147 (707)
|.-++.++.-...+|..-+..-+.+..+++.+..++..
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~ 101 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHH
Confidence 44444444444444444333333333333333333333
No 34
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.08 E-value=1 Score=40.32 Aligned_cols=11 Identities=36% Similarity=0.377 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 005229 174 RLHENEVESLE 184 (707)
Q Consensus 174 ~~~~~eL~~~e 184 (707)
..++.+|+++.
T Consensus 70 ~~ie~ElE~LT 80 (135)
T 2e7s_A 70 DKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.04 E-value=4.5 Score=32.78 Aligned_cols=10 Identities=10% Similarity=0.202 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 005229 136 TKLECEKKEL 145 (707)
Q Consensus 136 ~el~~~~~El 145 (707)
.++..+-+.|
T Consensus 13 ~KIq~avdtI 22 (81)
T 2jee_A 13 AKVQQAIDTI 22 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.56 E-value=7.6 Score=42.15 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 300 DSLKKGLEDRLQDLELKEREFEKRVK 325 (707)
Q Consensus 300 ~~le~~L~~~~~eL~~~e~~~~~~~~ 325 (707)
..|+..|+....+|..+|-.++.++.
T Consensus 134 rvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555554433
No 37
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=88.79 E-value=7.5 Score=33.43 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 62 RLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQ 95 (707)
Q Consensus 62 ~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~e 95 (707)
..+...+.++..++..+...+..++..+..+...
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~ 39 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTA 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333333333333333
No 38
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.70 E-value=4.4 Score=34.86 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=8.6
Q ss_pred HHHHHHhhhHhhHHHHH
Q 005229 19 EFNCELELKENELNSLS 35 (707)
Q Consensus 19 ~~~~eL~l~e~eL~~~~ 35 (707)
+|.+-=.+++++|...+
T Consensus 22 ECrN~T~lLq~qLTqAQ 38 (121)
T 3mq7_A 22 EARNVTHLLQQELTEAQ 38 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 44444455555555554
No 39
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=88.49 E-value=0.19 Score=39.85 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=29.1
Q ss_pred CCCccceee-eEcCCCceEEEEecCCCCcc--c---ccCCC--CcHHHHHHHHH
Q 005229 634 VSRMHFRGV-RQRPWGKWAAEIRDPKKAAR--I---WLGTF--DTAEAAALAYD 679 (707)
Q Consensus 634 ~~~s~~rGV-~~~~~g~w~a~i~~~~~~~~--~---~lG~f--~t~e~Aa~ayd 679 (707)
..+|+|.|| |..+.+.|.|.-.++++.+. . +.| | +.+..||-.|-
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rrsRtF~~k~yG-f~~e~Ak~~AIef~ 55 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRRSRTFHPKHFN-MDKEKARLAAVEFM 55 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEEEEEECCTTHH-HHHHHHHHHHHHHH
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEeeeeechhhcC-cCHHHHHHHHHHHH
Confidence 467999999 66688999999887754111 1 133 4 35666666654
No 40
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.16 E-value=5.6 Score=34.21 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=11.9
Q ss_pred HHHHhcChhhHHHhHHHHHHHHHHHhhhch
Q 005229 215 IEELNQDPASKDKELRFVQQSIEECSKEIP 244 (707)
Q Consensus 215 i~~l~~eie~~~~el~~~~~~le~l~~El~ 244 (707)
+++++.+|..+...+.++..+++++.+++.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 333333333344444444444444433333
No 41
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=87.70 E-value=17 Score=39.50 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=5.3
Q ss_pred ceeeeEcCC
Q 005229 639 FRGVRQRPW 647 (707)
Q Consensus 639 ~rGV~~~~~ 647 (707)
..||.+..|
T Consensus 436 ~~GI~W~~w 444 (464)
T 1m1j_B 436 DDGIVWMNW 444 (464)
T ss_dssp CCBSEEHHH
T ss_pred CCCeEeCCC
Confidence 467765554
No 42
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=86.83 E-value=14 Score=31.67 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQ 86 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le 86 (707)
++++..+..+.+......-.++...+..+..++..++
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554444444
No 43
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=85.83 E-value=22 Score=33.01 Aligned_cols=40 Identities=10% Similarity=0.181 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005229 75 VELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENE 114 (707)
Q Consensus 75 ~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~ 114 (707)
+..+.++.....++.+.+..+......+|.-.+.-|+.+.
T Consensus 19 L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~ 58 (170)
T 3l4q_C 19 LKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFN 58 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 44
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=85.76 E-value=28 Score=37.81 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSM 190 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~ 190 (707)
+..++..++.+..+|..++..+..+
T Consensus 170 i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555554443
No 45
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=85.67 E-value=8.6 Score=31.94 Aligned_cols=64 Identities=5% Similarity=0.114 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005229 74 EVELREKKVGEAQRSIEEQEKQLAFKE---SKISSMQTLIEENEGLLKDKEKLYDEVKNSLMLCETK 137 (707)
Q Consensus 74 e~~~~~~ei~~le~~i~e~~~el~ele---~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ele~le~e 137 (707)
.+...++-+...+.+|.+++..+...+ ..+..++..+.-+......-....+.+..+.+.+..+
T Consensus 10 ~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~q 76 (94)
T 3jsv_C 10 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQ 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333333334444444444433333 2333344444444444433333443333333333333
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.95 E-value=16 Score=30.51 Aligned_cols=29 Identities=3% Similarity=-0.036 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVG 83 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~ 83 (707)
..+...+..+.+++.-++.+-..++.++.
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKILLAELE 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444444433
No 47
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=83.49 E-value=31 Score=36.79 Aligned_cols=6 Identities=33% Similarity=0.850 Sum_probs=0.0
Q ss_pred hhhhHH
Q 005229 517 VPGLQC 522 (707)
Q Consensus 517 ~~~~i~ 522 (707)
.||+-.
T Consensus 350 ~pd~~~ 355 (491)
T 1m1j_A 350 LPDLES 355 (491)
T ss_dssp ------
T ss_pred CccHHH
Confidence 444433
No 48
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=83.41 E-value=76 Score=37.17 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=30.3
Q ss_pred hhhcccCcHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhhcc---hhhHHHhhhCCccchhhhHHHHhh
Q 005229 460 MRVAVENSLEVLGFLHLLAAYRLAPAFDREELESLLCIVAQHR---QTPKLRRTLGFADKVPGLQCSTTA 526 (707)
Q Consensus 460 ~~~~~~~~l~a~~fl~~l~~fgi~~~f~~~el~~l~~~~~~~~---~~~~l~~~lgl~~k~~~~i~~li~ 526 (707)
++.++.+.++---|+.++..+. ......+.+...|..+.... ...+|...|. ++-++.|++
T Consensus 770 ~D~d~dG~I~~~EF~~~~~~~~-~~~~~~~~l~~aF~~~~d~~G~Is~~El~~~l~-----~~~~~~l~~ 833 (863)
T 1sjj_A 770 VDPNRMGVVTFQAFIDFMSRET-ADTDTADQVMASFKILAGDKNYITVDELRRELP-----PDQAEYCIA 833 (863)
T ss_dssp HCTTSCSEEETTHHHHTHHHHS-TTCSSSHHHHHHHHGGGTSSSEEEHHHHHHHSC-----HHHHHHHHH
T ss_pred hCCCCCCcCcHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhCCCCcCcHHHHHHHCC-----HHHHHHHHH
Confidence 3444334444445555555442 22234456766666652211 1246666664 566666654
No 49
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=83.36 E-value=29 Score=32.26 Aligned_cols=26 Identities=4% Similarity=-0.089 Sum_probs=12.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhHH
Q 005229 249 ELISKGKTIAECSKEVELKKNQLNLI 274 (707)
Q Consensus 249 Ele~l~~~l~e~~~~le~k~~ele~l 274 (707)
|++.+.....-+..+|.++......+
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L 115 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKL 115 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444444433333
No 50
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=82.16 E-value=46 Score=33.73 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=24.5
Q ss_pred HHHHHHhhhHhhHHHHHHHhhcCCCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 19 EFNCELELKENELNSLSVSLNLKNKPS---SAQEWINKCQAYQKELRLWKNLIEECYD 73 (707)
Q Consensus 19 ~~~~eL~l~e~eL~~~~~el~~~~~~l---~~~l~~~~~~~~~~el~~l~~~i~e~~~ 73 (707)
.+..++..+..=|...+..+.+....- ++.-+..+...++.++......+..+..
T Consensus 8 qf~~~~~el~~Wl~e~~~~l~~~~~g~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~ 65 (326)
T 3kbt_A 8 QYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLAS 65 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433322 2333444445555555555555554443
No 51
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=81.91 E-value=2 Score=48.43 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=3.4
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHhHH
Q 005229 205 KRELNEIRKYIEELNQDPASKDKELR 230 (707)
Q Consensus 205 ~~e~~e~~~ei~~l~~eie~~~~el~ 230 (707)
..+......+...+..++...+....
T Consensus 425 ~~~~~~~~~e~~~~~~~~~~a~~~~~ 450 (575)
T 2i1j_A 425 QQEVELKDSETRRLQEEVEDARRKQD 450 (575)
T ss_dssp -----------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.94 E-value=32 Score=31.17 Aligned_cols=19 Identities=11% Similarity=-0.101 Sum_probs=6.9
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 005229 121 EKLYDEVKNSLMLCETKLE 139 (707)
Q Consensus 121 e~e~~~l~~ele~le~el~ 139 (707)
.+++..++.++..++.++.
T Consensus 102 ~DEl~aLqlq~n~lE~kl~ 120 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLS 120 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 53
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.39 E-value=34 Score=37.02 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=5.7
Q ss_pred hcChhhHHHhHHHHHH
Q 005229 219 NQDPASKDKELRFVQQ 234 (707)
Q Consensus 219 ~~eie~~~~el~~~~~ 234 (707)
+.+|.+++.+++..+.
T Consensus 449 ~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 449 EGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 54
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=79.95 E-value=18 Score=29.68 Aligned_cols=29 Identities=7% Similarity=0.165 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 169 LQGKVRLHENEVESLEQKLDSMRKQQKKY 197 (707)
Q Consensus 169 le~el~~~~~eL~~~e~el~~~~~ei~el 197 (707)
++..+..++.+|...+.++.....+.+.+
T Consensus 33 ~q~~i~~lE~el~~~r~e~~~ql~EYq~L 61 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARMQQQLDEYQEL 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444433333333333
No 55
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=79.70 E-value=25 Score=29.23 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 60 ELRLWKNLIEECYDEVELREKKVGEAQRSIEEQE 93 (707)
Q Consensus 60 el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~ 93 (707)
++..|++.+...-+++..++.+-..|+.+|..+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666655555444
No 56
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=79.47 E-value=29 Score=29.74 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 124 YDEVKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 124 ~~~l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
+..++.++..+..++..+..++......
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~ 42 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKA 42 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333
No 57
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=78.20 E-value=25 Score=29.61 Aligned_cols=25 Identities=8% Similarity=0.120 Sum_probs=9.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 005229 125 DEVKNSLMLCETKLECEKKELELTQ 149 (707)
Q Consensus 125 ~~l~~ele~le~el~~~~~Ele~~e 149 (707)
..++.++..+..++..+..++....
T Consensus 11 ~~lq~~~~~l~~q~~~l~~~~~e~~ 35 (107)
T 1fxk_A 11 QQLQQQAQAISVQKQTVEMQINETQ 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433333333
No 58
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.47 E-value=11 Score=29.69 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 186 KLDSMRKQQKKYFDDVELKKRELNEIR 212 (707)
Q Consensus 186 el~~~~~ei~el~~ele~k~~e~~e~~ 212 (707)
+|...+..|+++.+++..++.++.+++
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 59
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=77.27 E-value=1.2e+02 Score=35.54 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=10.6
Q ss_pred HHHHHHhhhHhhHHHHHHHhhcC
Q 005229 19 EFNCELELKENELNSLSVSLNLK 41 (707)
Q Consensus 19 ~~~~eL~l~e~eL~~~~~el~~~ 41 (707)
.+.......+.=|...+..+.+.
T Consensus 374 ~F~~~~~~~~~Wl~~~e~~l~~~ 396 (863)
T 1sjj_A 374 KFRQKASIHESWTDGKEAMLQQK 396 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444444444444555555543
No 60
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=76.74 E-value=35 Score=29.20 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 64 WKNLIEECYDEVELREKKVGEAQRSIEE 91 (707)
Q Consensus 64 l~~~i~e~~~e~~~~~~ei~~le~~i~e 91 (707)
..+.+.....-...+...+..|+.+|.+
T Consensus 13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 13 VTKQVSMARQAQVDLEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 61
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=76.62 E-value=15 Score=30.23 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHH
Q 005229 179 EVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELR 230 (707)
Q Consensus 179 eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~ 230 (707)
++...+..+..++.++..+..++...-.+...+-.---.++.+|..+++-++
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3333444444444444444444444444443333333334444444444443
No 62
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=74.68 E-value=33 Score=27.90 Aligned_cols=30 Identities=7% Similarity=0.241 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 168 LLQGKVRLHENEVESLEQKLDSMRKQQKKY 197 (707)
Q Consensus 168 ~le~el~~~~~eL~~~e~el~~~~~ei~el 197 (707)
..+..+..++.+|...+.++.....+.+++
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~~q~~EYq~L 59 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMARHLREYQDL 59 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444333333333
No 63
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=73.68 E-value=94 Score=32.69 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005229 84 EAQRSIEEQEKQLAFKESKISSMQTLIEENEG 115 (707)
Q Consensus 84 ~le~~i~e~~~el~ele~ei~~l~~~i~e~~~ 115 (707)
.+-.+......++..+..-++.....+.-++.
T Consensus 144 ~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~ 175 (373)
T 3hhm_B 144 RLYEEYTRTSQEIQMKRTAIEAFNETIKIFEE 175 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444333443333
No 64
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=72.07 E-value=36 Score=27.66 Aligned_cols=9 Identities=22% Similarity=0.191 Sum_probs=3.4
Q ss_pred hcChhhHHH
Q 005229 219 NQDPASKDK 227 (707)
Q Consensus 219 ~~eie~~~~ 227 (707)
..+|..+++
T Consensus 67 d~EIatYRk 75 (84)
T 1gk4_A 67 DIEIATYRK 75 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 65
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=70.97 E-value=91 Score=31.40 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 005229 299 FDSLKKGLEDRL 310 (707)
Q Consensus 299 ~~~le~~L~~~~ 310 (707)
+..+....+.|.
T Consensus 307 w~~l~~~w~~R~ 318 (323)
T 3edv_A 307 RKEMIDKWEDRW 318 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 66
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=70.74 E-value=37 Score=26.80 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005229 193 QQKKYFDDVELKKRELNEI 211 (707)
Q Consensus 193 ei~el~~ele~k~~e~~e~ 211 (707)
++..+...+..+-.++.++
T Consensus 43 Elk~~~e~Ld~KI~eL~el 61 (72)
T 3cve_A 43 NLKTLLEILDGKIFELTEL 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 3333333333333333333
No 67
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=70.50 E-value=38 Score=26.85 Aligned_cols=63 Identities=11% Similarity=-0.092 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005229 52 NKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENE 114 (707)
Q Consensus 52 ~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~ 114 (707)
+.++.+-.+-.++....+.+..-.+.+-.++.++..+.+-++.++.....-...++..+.+++
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555555555555444444444444444444444444443
No 68
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=68.68 E-value=1.3e+02 Score=32.38 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhh
Q 005229 438 EPEINAQVRDEAMKVAGEWKKKMR 461 (707)
Q Consensus 438 ~~~~~~~v~~~A~~~A~~Wk~~~~ 461 (707)
-|++.|++.+.|.+|...+-.-+.
T Consensus 335 ipppd~eai~~a~~l~~~~~~~~~ 358 (450)
T 3r6n_A 335 IPPPNPLAVDLSCKIEQYYEAILA 358 (450)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 467889999999998887776654
No 69
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=68.61 E-value=15 Score=32.23 Aligned_cols=8 Identities=38% Similarity=0.571 Sum_probs=3.0
Q ss_pred HHHHHHhh
Q 005229 264 VELKKNQL 271 (707)
Q Consensus 264 le~k~~el 271 (707)
+..++.++
T Consensus 105 la~KkAEl 112 (125)
T 2pms_C 105 IAAKKAEL 112 (125)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 70
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=68.39 E-value=1.3e+02 Score=32.16 Aligned_cols=7 Identities=14% Similarity=0.634 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 005229 331 EKELDSI 337 (707)
Q Consensus 331 e~~l~~~ 337 (707)
...++.+
T Consensus 419 ~~~~~~l 425 (476)
T 1hci_A 419 KNNIDKL 425 (476)
T ss_dssp HHHHHHH
T ss_pred HhhHHHH
Confidence 3333333
No 71
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=68.26 E-value=76 Score=33.84 Aligned_cols=12 Identities=25% Similarity=0.864 Sum_probs=7.8
Q ss_pred ceeeeEcCC-Cce
Q 005229 639 FRGVRQRPW-GKW 650 (707)
Q Consensus 639 ~rGV~~~~~-g~w 650 (707)
..||.+..| |.|
T Consensus 364 ~~GI~W~~w~g~~ 376 (409)
T 1m1j_C 364 DNGIIWATWRDRW 376 (409)
T ss_dssp CCSSEETTTSCTT
T ss_pred CCceEEccCCCcc
Confidence 478877766 544
No 72
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=67.92 E-value=1e+02 Score=30.86 Aligned_cols=22 Identities=18% Similarity=0.145 Sum_probs=9.6
Q ss_pred HHHHHhhhHhhHHHHHHHhhcC
Q 005229 20 FNCELELKENELNSLSVSLNLK 41 (707)
Q Consensus 20 ~~~eL~l~e~eL~~~~~el~~~ 41 (707)
+...+.....=+...+..+.+.
T Consensus 8 F~~~~~~l~~Wl~~~e~~l~~~ 29 (322)
T 1u4q_A 8 FNTGIKDFDFWLSEVEALLASE 29 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 3333444444444444455443
No 73
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=67.89 E-value=94 Score=33.10 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005229 170 QGKVRLHENEVESLEQKLDSMR 191 (707)
Q Consensus 170 e~el~~~~~eL~~~e~el~~~~ 191 (707)
+..+...+.+|..++..+..+.
T Consensus 111 ~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 111 TDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333444444444444433
No 74
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=66.30 E-value=24 Score=30.90 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=5.1
Q ss_pred HHhhhHhhHHHHHH
Q 005229 23 ELELKENELNSLSV 36 (707)
Q Consensus 23 eL~l~e~eL~~~~~ 36 (707)
.+..++++...++.
T Consensus 14 KvAElekkv~~lek 27 (125)
T 2pms_C 14 KIAELENQVHRLEQ 27 (125)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 75
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=63.96 E-value=1.2e+02 Score=32.71 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005229 164 EKLELLQGKVRLHENEVESLE 184 (707)
Q Consensus 164 ~~l~~le~el~~~~~eL~~~e 184 (707)
..+..+...|..++..+...+
T Consensus 170 ~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 170 SILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 334555555555555555443
No 76
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=63.02 E-value=1.3e+02 Score=30.23 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005229 292 LKEKETHFDSLKKGLEDRLQDLE 314 (707)
Q Consensus 292 ~~el~~~~~~le~~L~~~~~eL~ 314 (707)
..++...+..+...+..|...|+
T Consensus 298 ~~~l~~~W~~L~~~~~~R~~~L~ 320 (326)
T 3kbt_A 298 EQEVSAAWQALLDACAGRRTQLV 320 (326)
T ss_dssp HHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 77
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=62.54 E-value=1.7e+02 Score=31.33 Aligned_cols=20 Identities=15% Similarity=0.121 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhcCh
Q 005229 203 LKKRELNEIRKYIEELNQDP 222 (707)
Q Consensus 203 ~k~~e~~e~~~ei~~l~~ei 222 (707)
.++.-+.++..+|+.++..|
T Consensus 136 vLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 136 ALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444433333
No 78
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=59.51 E-value=72 Score=28.55 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQKLDSMRKQ---QKKYFDDVELKKRELNEIRKYIEE 217 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~~~~e---i~el~~ele~k~~e~~e~~~ei~~ 217 (707)
+...+..++.++++|...+.+|+++.=. ...+...++.+..+..+....+.+
T Consensus 71 ~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 71 TDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666655555553322 444445555555555554444443
No 79
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=59.11 E-value=62 Score=27.27 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=19.9
Q ss_pred HHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCC
Q 005229 9 IMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPS 45 (707)
Q Consensus 9 ~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l 45 (707)
.++++++++.....+|....-+|..+...++...-..
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDev 72 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDV 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 3445555555555555555555555555555555554
No 80
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=58.36 E-value=33 Score=27.55 Aligned_cols=12 Identities=8% Similarity=0.205 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 005229 82 VGEAQRSIEEQE 93 (707)
Q Consensus 82 i~~le~~i~e~~ 93 (707)
+...+.-|++++
T Consensus 23 lAfqE~tIeeLn 34 (78)
T 3efg_A 23 LSFQEQALTELS 34 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 81
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=58.14 E-value=2e+02 Score=30.72 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhHhhHHHHHHHhhcCCC-CC---chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 17 IGEFNCELELKENELNSLSVSLNLKNK-PS---SAQEWINKCQAYQKELRLWKNLIEECY 72 (707)
Q Consensus 17 ~~~~~~eL~l~e~eL~~~~~el~~~~~-~l---~~~l~~~~~~~~~~el~~l~~~i~e~~ 72 (707)
...+...+.....=|...+..+.+... .- ++.-+..+.+.++.++......+..+.
T Consensus 133 ~~~f~~~~~~~~~Wl~e~e~~l~~~~~~g~dl~~v~~ll~kh~~~~~~l~~~~~~v~~l~ 192 (476)
T 1hci_A 133 AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIA 192 (476)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHCCGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444555555555555555544332 21 222333444444445554444444443
No 82
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=57.44 E-value=1.8e+02 Score=31.30 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=4.5
Q ss_pred ceeeeEcCC
Q 005229 639 FRGVRQRPW 647 (707)
Q Consensus 639 ~rGV~~~~~ 647 (707)
..||.+..|
T Consensus 432 ~~GI~W~~w 440 (461)
T 3ghg_B 432 DDGVVWMNW 440 (461)
T ss_dssp CCSSBCHHH
T ss_pred CCceEeccC
Confidence 356644443
No 83
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=57.07 E-value=1.8e+02 Score=30.06 Aligned_cols=96 Identities=6% Similarity=0.105 Sum_probs=52.7
Q ss_pred HHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHH
Q 005229 226 DKELRFVQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKG 305 (707)
Q Consensus 226 ~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~ 305 (707)
+.++..++.++..+...+..... ...-+......+..+...+..-......+...|..+...|+++-..
T Consensus 225 ~k~~~~~~~ei~~l~~~i~~~~~-----------l~~~l~~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~ 293 (346)
T 2nrj_A 225 RDNLGKLEPLLAELRQTVDYKVT-----------LNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGH 293 (346)
T ss_dssp GGGHHHHHHHHHHHHSCCCHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555533222 2233344444444444444444444555677899999999998888
Q ss_pred HHHH-----HHHHHHHHHHHHHHHhhHHHhHH
Q 005229 306 LEDR-----LQDLELKEREFEKRVKEFELREK 332 (707)
Q Consensus 306 L~~~-----~~eL~~~e~~~~~~~~E~e~~e~ 332 (707)
|..- ...+......+..+..+-..+..
T Consensus 294 I~~~~~~i~~~~~~~i~~~L~~a~~~W~~l~~ 325 (346)
T 2nrj_A 294 IENAAQKADQNKFKFLKPNLNAAKDSWKTLRT 325 (346)
T ss_dssp HHHHTTCCSTTTTGGGHHHHHHHHHHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8862 23344444445555555444433
No 84
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=57.01 E-value=1.8e+02 Score=30.05 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005229 293 KEKETHFDSLKKGLEDRLQDLE 314 (707)
Q Consensus 293 ~el~~~~~~le~~L~~~~~eL~ 314 (707)
..+..++..+...+......++
T Consensus 274 ~~l~~~W~~m~~~~~~l~~~I~ 295 (346)
T 2nrj_A 274 TYMSTQWHDLDSQYSGVLGHIE 295 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333
No 85
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=55.21 E-value=75 Score=24.98 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005229 53 KCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQ 107 (707)
Q Consensus 53 ~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~ 107 (707)
+..-...++.++..+|..+....+..-+++..++.+-..+..+|...+.+++.++
T Consensus 15 rKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 15 QKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666666666666666666666666666666666666665555443
No 86
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=53.47 E-value=3.3 Score=38.87 Aligned_cols=38 Identities=5% Similarity=-0.124 Sum_probs=30.0
Q ss_pred ceeeeEcCCCceEEEEecCCCCcccccCCCCcHHHHHHHHH
Q 005229 639 FRGVRQRPWGKWAAEIRDPKKAARIWLGTFDTAEAAALAYD 679 (707)
Q Consensus 639 ~rGV~~~~~g~w~a~i~~~~~~~~~~lG~f~t~e~Aa~ayd 679 (707)
++||.....++|.+.|... + ..++|.|+|.++||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~~-~--~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVIS-P--DGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEEC-T--TSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEEc-C--CceEEeeCCHHHHHHHHC
Confidence 5677334457799999877 4 678999999999999965
No 87
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=52.96 E-value=2.5e+02 Score=30.38 Aligned_cols=15 Identities=7% Similarity=-0.148 Sum_probs=8.1
Q ss_pred cCCCCCccceee-eEc
Q 005229 631 AGNVSRMHFRGV-RQR 645 (707)
Q Consensus 631 ~~~~~~s~~rGV-~~~ 645 (707)
++..+++++||+ |+-
T Consensus 418 ~~~~~~~~~~~~iWfa 433 (497)
T 3iox_A 418 PGKDNTDGKKPNIWYS 433 (497)
T ss_dssp TTCCTTCCBCSEEEEC
T ss_pred cccccccCCCceEEEE
Confidence 344555666665 444
No 88
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.54 E-value=64 Score=27.15 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 192 KQQKKYFDDVELKKRELNEIRKYIE 216 (707)
Q Consensus 192 ~ei~el~~ele~k~~e~~e~~~ei~ 216 (707)
++|+.+..+...+.+++..++.++.
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444443
No 89
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=52.03 E-value=1.7e+02 Score=28.23 Aligned_cols=24 Identities=4% Similarity=-0.028 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESLEQKLDS 189 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~e~el~~ 189 (707)
...+......+...+...+..|..
T Consensus 96 ~~~l~~~W~~L~~~~~~R~~~L~~ 119 (250)
T 1quu_A 96 CQKICDQWDRLGTLTQKRREALER 119 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 90
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.60 E-value=22 Score=29.96 Aligned_cols=24 Identities=17% Similarity=0.017 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 63 LWKNLIEECYDEVELREKKVGEAQ 86 (707)
Q Consensus 63 ~l~~~i~e~~~e~~~~~~ei~~le 86 (707)
.+..+|+.+..+...+..++..|+
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 91
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=51.52 E-value=2.6e+02 Score=30.20 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=13.3
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHhhhHH
Q 005229 248 EELISKGKTIAECSKEVELKKNQLNLI 274 (707)
Q Consensus 248 ~Ele~l~~~l~e~~~~le~k~~ele~l 274 (707)
++++.++..+..+...+...++++...
T Consensus 185 k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 211 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVLKTKEKYEKS 211 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444433
No 92
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=50.60 E-value=2.4e+02 Score=29.51 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 141 EKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQQKK 196 (707)
Q Consensus 141 ~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~ei~e 196 (707)
+..-.+.++.+++++......+++.+........+++.++..++-++-.+.+..+.
T Consensus 203 ~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~ 258 (373)
T 3hhm_B 203 IMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQ 258 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 33333333333333433444444445555555566666666666666665555433
No 93
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=49.60 E-value=35 Score=27.40 Aligned_cols=50 Identities=6% Similarity=0.102 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhchhhHHhhhhhhhhHHHHHHHHHHHHHhhhHHHHhhhhh
Q 005229 232 VQQSIEECSKEIPGKKEELISKGKTIAECSKEVELKKNQLNLIQDKSSLF 281 (707)
Q Consensus 232 ~~~~le~l~~El~~l~~Ele~l~~~l~e~~~~le~k~~ele~l~~~le~l 281 (707)
++.++..|+..+.-.+.-++.+...+....+.|+.++.++..+..++..+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555555555555555544444443
No 94
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=49.50 E-value=64 Score=35.21 Aligned_cols=28 Identities=0% Similarity=-0.161 Sum_probs=13.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 128 KNSLMLCETKLECEKKELELTQSSIKEL 155 (707)
Q Consensus 128 ~~ele~le~el~~~~~Ele~~e~~i~~l 155 (707)
..++..+..++..+..++..++.++..+
T Consensus 77 ~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 77 IAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555554444443
No 95
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=49.34 E-value=2e+02 Score=30.46 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=7.7
Q ss_pred ceeeeEcCC-Cce
Q 005229 639 FRGVRQRPW-GKW 650 (707)
Q Consensus 639 ~rGV~~~~~-g~w 650 (707)
-.||.+..| |.|
T Consensus 364 ~~GI~W~~w~g~~ 376 (411)
T 3ghg_C 364 DNGIIWATWKTRW 376 (411)
T ss_dssp CCBSEETTTSCTT
T ss_pred cceeeecccCCCc
Confidence 478877766 443
No 96
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=48.64 E-value=95 Score=34.07 Aligned_cols=31 Identities=3% Similarity=-0.151 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 126 EVKNSLMLCETKLECEKKELELTQSSIKELS 156 (707)
Q Consensus 126 ~l~~ele~le~el~~~~~Ele~~e~~i~~l~ 156 (707)
.+..+...+..++..+..++..++.++..+-
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555443
No 97
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=47.99 E-value=2.1e+02 Score=27.97 Aligned_cols=9 Identities=22% Similarity=0.464 Sum_probs=3.5
Q ss_pred HHHHhcChh
Q 005229 215 IEELNQDPA 223 (707)
Q Consensus 215 i~~l~~eie 223 (707)
++.+...+.
T Consensus 134 ~eel~~~L~ 142 (243)
T 2a01_A 134 LHELQEKLS 142 (243)
T ss_dssp HHHHCCSCC
T ss_pred HHHHHHHHH
Confidence 333334433
No 98
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=47.89 E-value=1.7e+02 Score=32.11 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=15.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005229 123 LYDEVKNSLMLCETKLECEKKELELTQSSI 152 (707)
Q Consensus 123 e~~~l~~ele~le~el~~~~~Ele~~e~~i 152 (707)
+...+..++..++.++.++.+++...--.|
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445555555555555555555444333
No 99
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=47.78 E-value=3.1 Score=26.39 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=19.5
Q ss_pred hHHHHhhcCCchhhHHHhhhCCCC
Q 005229 385 VFDTIKSARDPALLVLHAMSGFYP 408 (707)
Q Consensus 385 ~~~al~~a~dpa~lVLd~~~~~~~ 408 (707)
+-+..+.|.+||..|+.++.||..
T Consensus 10 vrnnyksavgpadwvisavrgfih 33 (34)
T 2rlw_A 10 VRNNYKSAVGPADWVISAVRGFIH 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccccccChHHHHHHHHHhhcc
Confidence 344567788999999999999964
No 100
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=47.51 E-value=1.9e+02 Score=27.37 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005229 137 KLECEKKELELTQSSIKELS 156 (707)
Q Consensus 137 el~~~~~Ele~~e~~i~~l~ 156 (707)
++..+...+...+..|..++
T Consensus 127 ~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 127 NVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccchhhhh
Confidence 33333333333333444443
No 101
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=46.94 E-value=77 Score=22.91 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHhHHHH
Q 005229 205 KRELNEIRKYIEELNQDPASKDKELRFV 232 (707)
Q Consensus 205 ~~e~~e~~~ei~~l~~eie~~~~el~~~ 232 (707)
..+...+..+++.-.+.+.+++.+....
T Consensus 16 k~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 16 KMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 3333333333333333333333333333
No 102
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=45.56 E-value=2.4e+02 Score=29.99 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 144 ELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQK 186 (707)
Q Consensus 144 Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~e 186 (707)
++...+..|......+..++..+......|..++..+..+...
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444555556666666666665554
No 103
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=45.44 E-value=2.4e+02 Score=28.08 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=21.5
Q ss_pred HHHHHHhhhHhhHHHHHHHhhcCCCCC---chHHHHHHHHHHHHHHHH-HHHHHHHH
Q 005229 19 EFNCELELKENELNSLSVSLNLKNKPS---SAQEWINKCQAYQKELRL-WKNLIEEC 71 (707)
Q Consensus 19 ~~~~eL~l~e~eL~~~~~el~~~~~~l---~~~l~~~~~~~~~~el~~-l~~~i~e~ 71 (707)
.+..+++....=|...+.-+.+..-.- .+..+..+++.+..++.. ....+..+
T Consensus 10 ~f~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~l~~~~~~f~~el~~~~~~~v~~v 66 (323)
T 3edv_A 10 QLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTV 66 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444444444433333322222 123344455555555544 23444443
No 104
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.37 E-value=70 Score=34.66 Aligned_cols=28 Identities=11% Similarity=-0.027 Sum_probs=13.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 128 KNSLMLCETKLECEKKELELTQSSIKEL 155 (707)
Q Consensus 128 ~~ele~le~el~~~~~Ele~~e~~i~~l 155 (707)
..+...+..++..+..++..++.++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555544444444
No 105
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=45.00 E-value=94 Score=25.22 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 005229 91 EQEKQLAFKESKISSMQTLIEE 112 (707)
Q Consensus 91 e~~~el~ele~ei~~l~~~i~e 112 (707)
....+|+.+++.|+..++.|.+
T Consensus 55 ~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 55 HHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333333
No 106
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=44.96 E-value=2e+02 Score=27.06 Aligned_cols=51 Identities=8% Similarity=0.105 Sum_probs=24.3
Q ss_pred hHHHhHHHHHHHHHHHhhhchhh--HHhhhhhhhhHHHHHHHHHHHHHhhhHH
Q 005229 224 SKDKELRFVQQSIEECSKEIPGK--KEELISKGKTIAECSKEVELKKNQLNLI 274 (707)
Q Consensus 224 ~~~~el~~~~~~le~l~~El~~l--~~Ele~l~~~l~e~~~~le~k~~ele~l 274 (707)
.++..+...+.+-+.+...+-+. +.++..+-.++....+.....+...+++
T Consensus 132 ~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~rw 184 (192)
T 2p22_C 132 KLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLATW 184 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555443 4455555555555554444444433333
No 107
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=44.60 E-value=2.5e+02 Score=27.93 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005229 295 KETHFDSLKKGLEDRLQD 312 (707)
Q Consensus 295 l~~~~~~le~~L~~~~~e 312 (707)
+...+..+......|...
T Consensus 299 l~~rw~~l~~~~~~R~~~ 316 (322)
T 1u4q_A 299 LKGKVSDLEKAAAQRKAK 316 (322)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 108
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=44.24 E-value=3.4e+02 Score=29.36 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhHHHH
Q 005229 118 KDKEKLYDEVKNSLMLC 134 (707)
Q Consensus 118 ~~~e~e~~~l~~ele~l 134 (707)
......+.....+++..
T Consensus 345 ~~t~~~~~~~~~~~~~~ 361 (551)
T 2b5u_A 345 AKAVQVYNSRKSELDAA 361 (551)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhh
Confidence 33344444444444333
No 109
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.17 E-value=1.8e+02 Score=31.29 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=5.8
Q ss_pred hHHHhhhCCc
Q 005229 505 PKLRRTLGFA 514 (707)
Q Consensus 505 ~~l~~~lgl~ 514 (707)
..++..|||-
T Consensus 328 ~~il~~LGL~ 337 (455)
T 2dq0_A 328 EELFQELEIP 337 (455)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCc
Confidence 4456666663
No 110
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=44.17 E-value=1.6e+02 Score=32.14 Aligned_cols=21 Identities=19% Similarity=0.003 Sum_probs=9.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 005229 127 VKNSLMLCETKLECEKKELEL 147 (707)
Q Consensus 127 l~~ele~le~el~~~~~Ele~ 147 (707)
+..++..++.++..+.+++..
T Consensus 83 l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 83 LSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 111
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=43.78 E-value=87 Score=22.42 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 292 LKEKETHFDSLKKGLEDRLQDLEL 315 (707)
Q Consensus 292 ~~el~~~~~~le~~L~~~~~eL~~ 315 (707)
+..+-..|++-+..|..|...|+.
T Consensus 21 ~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 21 FARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555566666666666666553
No 112
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=43.63 E-value=1.2e+02 Score=25.85 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCC
Q 005229 12 LGQKRIGEFNCELELKENELNSLSVSLNLKNKPS 45 (707)
Q Consensus 12 ~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l 45 (707)
++++++.....+|....-+|..+...+....-.+
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDev 59 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYEKDPDEL 59 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 3444444444444444444444444444444444
No 113
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=43.55 E-value=66 Score=25.39 Aligned_cols=15 Identities=0% Similarity=0.082 Sum_probs=5.4
Q ss_pred HHHhHHHHHHHHHHH
Q 005229 99 KESKISSMQTLIEEN 113 (707)
Q Consensus 99 le~ei~~l~~~i~e~ 113 (707)
.+.+|.+++..|..+
T Consensus 54 ~k~Ei~elrr~iq~L 68 (77)
T 3trt_A 54 AKQESTEYRRQVQSL 68 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 114
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=43.28 E-value=3.4e+02 Score=29.13 Aligned_cols=24 Identities=0% Similarity=-0.206 Sum_probs=14.0
Q ss_pred HHHhhhHhhHHHHHHHhhcCCCCC
Q 005229 22 CELELKENELNSLSVSLNLKNKPS 45 (707)
Q Consensus 22 ~eL~l~e~eL~~~~~el~~~~~~l 45 (707)
+.++.+..-+...+..+.+....-
T Consensus 9 r~v~dl~~Wl~E~~~~L~S~d~Gk 32 (450)
T 3r6n_A 9 HVTSECLGWMRQQRAEMDMVAWGV 32 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred ccHHHHHHHHHHHHHhcCccccCC
Confidence 344555555666666776665543
No 115
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=42.84 E-value=1.3e+02 Score=24.08 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=19.2
Q ss_pred HhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCC
Q 005229 10 MGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPS 45 (707)
Q Consensus 10 ~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l 45 (707)
+.++++.+.....+|....-+|..+...+....-..
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDev 42 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDV 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 444555555555555555555555555555555554
No 116
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.68 E-value=40 Score=35.97 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=7.0
Q ss_pred hHHHhhhCCC
Q 005229 398 LVLHAMSGFY 407 (707)
Q Consensus 398 lVLd~~~~~~ 407 (707)
+|-++++||-
T Consensus 132 lv~~~l~G~N 141 (403)
T 4etp_A 132 LVQSSLDGYN 141 (403)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHhCCcc
Confidence 6777777763
No 117
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.59 E-value=58 Score=34.71 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=5.5
Q ss_pred HHHHHHHHhcCh
Q 005229 211 IRKYIEELNQDP 222 (707)
Q Consensus 211 ~~~ei~~l~~ei 222 (707)
+..++.++...|
T Consensus 50 l~n~~~elkgnI 61 (403)
T 4etp_A 50 LHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHCSE
T ss_pred HHHHHHHcCCCe
Confidence 344444454444
No 118
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=41.99 E-value=50 Score=35.42 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=5.8
Q ss_pred hHHHhhhCCc
Q 005229 505 PKLRRTLGFA 514 (707)
Q Consensus 505 ~~l~~~lgl~ 514 (707)
-.++..|||.
T Consensus 303 ~~il~~LGL~ 312 (421)
T 1ses_A 303 EEILRLLELP 312 (421)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHCCCc
Confidence 3455666664
No 119
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=41.70 E-value=1.5e+02 Score=24.59 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=17.3
Q ss_pred HhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCC
Q 005229 10 MGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPS 45 (707)
Q Consensus 10 ~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l 45 (707)
+..++..+.....+|....-+|..+...+....-.+
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDev 42 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDV 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 344444444444444444444444444444444444
No 120
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=41.07 E-value=80 Score=33.81 Aligned_cols=29 Identities=7% Similarity=0.011 Sum_probs=13.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 127 VKNSLMLCETKLECEKKELELTQSSIKEL 155 (707)
Q Consensus 127 l~~ele~le~el~~~~~Ele~~e~~i~~l 155 (707)
+..++..+..++..+..++..++..+..+
T Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 69 LIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555554443
No 121
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=40.68 E-value=2e+02 Score=25.73 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 005229 171 GKVRLHENEVES 182 (707)
Q Consensus 171 ~el~~~~~eL~~ 182 (707)
..++.+.+++..
T Consensus 107 a~~~q~~~d~~~ 118 (158)
T 3tul_A 107 AAVEQAGKEATE 118 (158)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 122
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=40.51 E-value=2.2e+02 Score=26.13 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 137 KLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKL 187 (707)
Q Consensus 137 el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el 187 (707)
.+..+..-|..+..+...+...+....+.+......+......+.....+.
T Consensus 72 ~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~ 122 (169)
T 3k29_A 72 AILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEE 122 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333334444444444444444333333
No 123
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=40.38 E-value=1e+02 Score=25.84 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHhhhhh
Q 005229 254 GKTIAECSKEVELKKNQLNLIQDKSSLF 281 (707)
Q Consensus 254 ~~~l~e~~~~le~k~~ele~l~~~le~l 281 (707)
..+|.+....|+.++.++-.++..+..+
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554444443
No 124
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=40.17 E-value=1.3e+02 Score=23.27 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhhHHHHHHHhHHHHHHHHHHHHHHHH
Q 005229 258 AECSKEVELKKNQLNLIQDKSSLFQTRTIVYLKELKEKETHFDSLKKGLE 307 (707)
Q Consensus 258 ~e~~~~le~k~~ele~l~~~le~le~~~~~~~~~~~el~~~~~~le~~L~ 307 (707)
.++...+.+++.+++++..-+..+.++..-++.--+.|++.....+.++.
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~ 55 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKIS 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 34556677777777777777777777655444333444444444444443
No 125
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=37.08 E-value=3.5e+02 Score=27.42 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 137 KLECEKKELELTQSSIKELSMEFHSEEEKLELLQGKVRLHENEVESLEQKLDSMRKQ 193 (707)
Q Consensus 137 el~~~~~Ele~~e~~i~~l~~ele~~e~~l~~le~el~~~~~eL~~~e~el~~~~~e 193 (707)
++..+..-.+.++..+..+..-....+..+.-.+.++..+++++...+-++-.+.+.
T Consensus 91 e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~~pdw~~l~k~ 147 (302)
T 2y3a_B 91 EMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRKI 147 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccCChHHHHHhhc
Confidence 334444444444444444444444444556666666666666666666666555554
No 126
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.91 E-value=76 Score=32.69 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=5.8
Q ss_pred ceeeeEcCC
Q 005229 639 FRGVRQRPW 647 (707)
Q Consensus 639 ~rGV~~~~~ 647 (707)
..||.+..|
T Consensus 284 ~~GI~W~~w 292 (323)
T 1lwu_C 284 DDGIIWATW 292 (323)
T ss_dssp CCSSEEGGG
T ss_pred CCceEEccC
Confidence 468866655
No 127
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=35.46 E-value=2e+02 Score=29.14 Aligned_cols=46 Identities=4% Similarity=0.131 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 167 ELLQGKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIR 212 (707)
Q Consensus 167 ~~le~el~~~~~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~ 212 (707)
..+......+...+..+-.-....+.++.-...++-..+++++...
T Consensus 93 ~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~~ 138 (302)
T 2y3a_B 93 QRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLK 138 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccCC
Confidence 3334444444444444444333344444333333333333333333
No 128
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=35.26 E-value=4.6e+02 Score=28.34 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHH
Q 005229 441 INAQVRDEAMKV 452 (707)
Q Consensus 441 ~~~~v~~~A~~~ 452 (707)
+++.+++.|+.+
T Consensus 503 ~~~~~~~~a~~l 514 (517)
T 4ad8_A 503 TSEAALEHAREL 514 (517)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666654
No 129
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=34.89 E-value=69 Score=19.90 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 291 ELKEKETHFDSLKKGLEDRLQDLEL 315 (707)
Q Consensus 291 ~~~el~~~~~~le~~L~~~~~eL~~ 315 (707)
+|+.++.....++..|+.+.+.|+.
T Consensus 2 ewealekkcaalesklqalekklea 26 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444443
No 130
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=34.87 E-value=1.6e+02 Score=25.68 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=0.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005229 55 QAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESK 102 (707)
Q Consensus 55 ~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~e 102 (707)
..+-.++.+....+...+.....++.+...++.+......+++++.++
T Consensus 5 tSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq 52 (130)
T 3cl3_D 5 SGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQ 52 (130)
T ss_dssp ----------------------------------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344556666666677777777777777777777766666666665443
No 131
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=34.58 E-value=1.9e+02 Score=23.81 Aligned_cols=8 Identities=0% Similarity=-0.238 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 005229 190 MRKQQKKY 197 (707)
Q Consensus 190 ~~~ei~el 197 (707)
.+.-+..+
T Consensus 44 CNqTV~tL 51 (99)
T 3ni0_A 44 CNLTVVTL 51 (99)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 132
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=34.42 E-value=98 Score=24.50 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 005229 174 RLHENEVESLEQKLD 188 (707)
Q Consensus 174 ~~~~~eL~~~e~el~ 188 (707)
..++.+|...+.++.
T Consensus 15 ~~lE~eL~~~r~e~~ 29 (74)
T 2xv5_A 15 AEKEREMAEMRARMQ 29 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 133
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=34.26 E-value=2.9e+02 Score=25.79 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=10.0
Q ss_pred HHHhhhchhhHHhhhhhhhhHHHHH
Q 005229 237 EECSKEIPGKKEELISKGKTIAECS 261 (707)
Q Consensus 237 e~l~~El~~l~~Ele~l~~~l~e~~ 261 (707)
..+...+..++.++......+..+.
T Consensus 143 ~~l~~~h~~~e~dL~~~~~~v~~l~ 167 (218)
T 3edu_A 143 ESFHRVHTAFERELHLLGVQVQQFQ 167 (218)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 134
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=33.12 E-value=1.5e+02 Score=23.41 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 292 LKEKETHFDSLKKGLEDRLQDLEL 315 (707)
Q Consensus 292 ~~el~~~~~~le~~L~~~~~eL~~ 315 (707)
+..|-..|++-+..|..|...|+.
T Consensus 23 fARLLaEy~ssQ~KLKqRit~LE~ 46 (74)
T 3swf_A 23 FARILAEYESMQQKLKQRLTKVEK 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544
No 135
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=32.56 E-value=3.6e+02 Score=26.22 Aligned_cols=9 Identities=22% Similarity=0.464 Sum_probs=3.4
Q ss_pred HHHHHHHhh
Q 005229 151 SIKELSMEF 159 (707)
Q Consensus 151 ~i~~l~~el 159 (707)
.+++++..+
T Consensus 133 ~~eel~~~L 141 (243)
T 2a01_A 133 KLHELQEKL 141 (243)
T ss_dssp HHHHHCCSC
T ss_pred hHHHHHHHH
Confidence 333343333
No 136
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=32.37 E-value=2.1e+02 Score=23.56 Aligned_cols=13 Identities=0% Similarity=-0.048 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 005229 175 LHENEVESLEQKL 187 (707)
Q Consensus 175 ~~~~eL~~~e~el 187 (707)
.+..+|...+..+
T Consensus 47 ~l~~ei~~~~~~v 59 (119)
T 3uun_A 47 GYMMDLTAHQGRV 59 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHH
Confidence 3333333333333
No 137
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.73 E-value=1e+02 Score=31.74 Aligned_cols=25 Identities=4% Similarity=-0.004 Sum_probs=10.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 005229 127 VKNSLMLCETKLECEKKELELTQSS 151 (707)
Q Consensus 127 l~~ele~le~el~~~~~Ele~~e~~ 151 (707)
++..++.++.+|..++..|..++..
T Consensus 31 L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 31 LSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444433
No 138
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=31.40 E-value=2.4e+02 Score=23.98 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 005229 132 MLCETKLECEKKELEL 147 (707)
Q Consensus 132 e~le~el~~~~~Ele~ 147 (707)
+.++.++.....+|..
T Consensus 25 eeLq~Ei~~~E~QL~~ 40 (113)
T 4fi5_A 25 EELQREINAHEGQLVI 40 (113)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 139
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=31.22 E-value=2.1e+02 Score=31.20 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 131 LMLCETKLECEKKELELTQSSIKEL 155 (707)
Q Consensus 131 le~le~el~~~~~Ele~~e~~i~~l 155 (707)
...+..++..+..++..++..+..+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555444
No 140
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=30.91 E-value=2.3e+02 Score=23.42 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 292 LKEKETHFDSLKKGLEDRLQDLEL 315 (707)
Q Consensus 292 ~~el~~~~~~le~~L~~~~~eL~~ 315 (707)
+..+...++.+......|...|+.
T Consensus 87 l~~l~~rw~~L~~~~~~R~~~L~~ 110 (118)
T 3uul_A 87 MTLLNARWEALRVESMERQSRLHD 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555544444444443
No 141
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=30.30 E-value=5.5e+02 Score=27.69 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=49.1
Q ss_pred HHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 7 EKIMGLGQKRIGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQ 86 (707)
Q Consensus 7 ~~~~~~~~~~~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le 86 (707)
++-+..+..........++..-..++.++.-|...-..- +..++.....++..++....+.+..+......+.++.
T Consensus 53 Q~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~~L~~~GD~~----vi~qI~~n~~dI~~Lk~~~~~~~~~l~~~~~~~~ei~ 128 (487)
T 2bsg_A 53 LRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIE----ALAQIGINKKDISDLKTLTSEHTEILNGTNNTVDSIL 128 (487)
T ss_pred hhhHHHHhhhHHHHHhhHHHHHHHHHHHHHHHhccccHH----HHHHHHhhHHHHHHHhcchhhhhhhhhhhccchHHHH
Confidence 334444444444444444444445555555444444444 6677777777788888877777777777777777766
Q ss_pred HHHHH
Q 005229 87 RSIEE 91 (707)
Q Consensus 87 ~~i~e 91 (707)
.++=.
T Consensus 129 ~diG~ 133 (487)
T 2bsg_A 129 ADIGP 133 (487)
T ss_pred hhcCc
Confidence 66544
No 142
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=30.21 E-value=3.4e+02 Score=25.31 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHhhhHH
Q 005229 255 KTIAECSKEVELKKNQLNLI 274 (707)
Q Consensus 255 ~~l~e~~~~le~k~~ele~l 274 (707)
......+++|...+..++.+
T Consensus 147 ~~h~~~e~dL~~~~~~v~~l 166 (218)
T 3edu_A 147 RVHTAFERELHLLGVQVQQF 166 (218)
T ss_dssp CSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333
No 143
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=30.08 E-value=96 Score=27.10 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005229 113 NEGLLKDKEKLYDEVKNSLMLCETKLECEKKELE 146 (707)
Q Consensus 113 ~~~~l~~~e~e~~~l~~ele~le~el~~~~~Ele 146 (707)
....+...+...+.++.+...++.++.....+++
T Consensus 14 sqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Ele 47 (130)
T 3cl3_D 14 SQSRLEAATKECQALEGRARAASEQARQLESERE 47 (130)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3333344444444444444444444433333333
No 144
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=30.04 E-value=6.6e+02 Score=28.52 Aligned_cols=74 Identities=9% Similarity=0.019 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhHhhHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 17 IGEFNCELELKENELNSLSVSLNLKNKPSSAQEWINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQE 93 (707)
Q Consensus 17 ~~~~~~eL~l~e~eL~~~~~el~~~~~~l~~~l~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~ 93 (707)
+.++.+.|+.-+.+-+.++.++........ ...-...+..++..++..+.+...-=..+...+......+..+.
T Consensus 457 L~e~~~~L~~E~~ed~~~R~k~g~~w~r~~---S~~~~~~l~~~~~~~~~~l~~A~~sD~~v~~~~~~~~~~l~~L~ 530 (704)
T 2xs1_A 457 LDESLRLLDEEEATDNDLRAKFKERWQRTP---SNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLC 530 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCSCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCC---cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhC
Confidence 334444455555555555666655432220 11123455566666665555555444444444444444444433
No 145
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=29.96 E-value=40 Score=26.30 Aligned_cols=40 Identities=23% Similarity=0.141 Sum_probs=29.9
Q ss_pred CccceeeeEcCCCceEEEEecCCCCcccccCCCCcHHHHHHHH
Q 005229 636 RMHFRGVRQRPWGKWAAEIRDPKKAARIWLGTFDTAEAAALAY 678 (707)
Q Consensus 636 ~s~~rGV~~~~~g~w~a~i~~~~~~~~~~lG~f~t~e~Aa~ay 678 (707)
-.+||.||.-+ |||+|.+..+..- ..--.|..+|.|-|.-
T Consensus 37 md~frdvw~lr-gkyvafvl~ge~f--rrspafsvpesaqrwa 76 (87)
T 2bn8_A 37 MDSFRDVWMLR-GKYVAFVLMGESF--LRSPAFTVPESAQRWA 76 (87)
T ss_dssp TTTCTTEEEET-TEEEEBCCSSSCC--CBCCCBSSHHHHHHHH
T ss_pred cccchhheeec-cceEEEEEechhh--ccCCccCCcHHHHHHH
Confidence 35799999888 9999998665542 2236899999887653
No 146
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.31 E-value=1.3e+02 Score=20.12 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 005229 88 SIEEQEKQLAFKESKISS 105 (707)
Q Consensus 88 ~i~e~~~el~ele~ei~~ 105 (707)
.++++-.....++.++..
T Consensus 9 KVEeLl~~~~~Le~eV~R 26 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVAR 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 333333333333333333
No 147
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=27.72 E-value=2.9e+02 Score=23.66 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=40.1
Q ss_pred HHHHHHHHHH-hhhCC---CCCCCHHHHHHHHHHhhh-----cchhhHHHhh---hCCccchhhhHHHHhhcCCcccc
Q 005229 468 LEVLGFLHLL-AAYRL---APAFDREELESLLCIVAQ-----HRQTPKLRRT---LGFADKVPGLQCSTTAEGRSAPS 533 (707)
Q Consensus 468 l~a~~fl~~l-~~fgi---~~~f~~~el~~l~~~~~~-----~~~~~~l~~~---lgl~~k~~~~i~~li~~g~~~~a 533 (707)
|..+-.|.|| |+|.+ .|+||...|.+|+...-. .-+--.|..+ -|.-.++-.||..||++--+..+
T Consensus 20 Ls~hhWLNfLQAAyRLqPgPS~fDFhqLr~fLklAl~TPvWlnPI~YSlLA~LiPkgyPGRv~eIi~ILi~~~~~~~~ 97 (137)
T 1jvr_A 20 LSTHHWLNFLQAAYRLQPGPSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRVVEIINILVKNQVSPSA 97 (137)
T ss_dssp STHHHHHHHHHHHHHSSCCCSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSCSSCSTTHHHHHHHHHTTTCCCCC
T ss_pred ccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhcCcccccchhHHHHHhhccCCCCchHHHHHHHHHHhcCCCCC
Confidence 4455555554 56776 589999999998874321 1111122222 25557788888888877655543
No 148
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.52 E-value=1.1e+02 Score=32.67 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=5.4
Q ss_pred hHHHhhhCCc
Q 005229 505 PKLRRTLGFA 514 (707)
Q Consensus 505 ~~l~~~lgl~ 514 (707)
..++..|||.
T Consensus 307 ~~il~~LGL~ 316 (425)
T 2dq3_A 307 EEVLQLLGLP 316 (425)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHCCCc
Confidence 3455566663
No 149
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=27.49 E-value=6.1e+02 Score=27.36 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005229 166 LELLQGKVRLHENEVESL 183 (707)
Q Consensus 166 l~~le~el~~~~~eL~~~ 183 (707)
++..+..++.+.+-++..
T Consensus 191 i~~yr~k~~aL~~aIe~E 208 (526)
T 3iyk_A 191 VKEYRDKIDALKNAIEVE 208 (526)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 150
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=26.10 E-value=34 Score=28.08 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=27.8
Q ss_pred CceEEEEecCCCCcccccCCCC--cHHHHHHHHHHHHHHc
Q 005229 648 GKWAAEIRDPKKAARIWLGTFD--TAEAAALAYDEAALRF 685 (707)
Q Consensus 648 g~w~a~i~~~~~~~~~~lG~f~--t~e~Aa~ayd~aa~~~ 685 (707)
..|.-+.+.+++.+++.||.|+ |..+|...-+.+...+
T Consensus 36 K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 36 RHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4588888877777789999997 5777776666554444
No 151
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.76 E-value=2.8e+02 Score=22.79 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005229 51 INKCQAYQKELRLWKNLIEE 70 (707)
Q Consensus 51 ~~~~~~~~~el~~l~~~i~e 70 (707)
..++..++...-.+++..-.
T Consensus 20 ~eev~~lKq~RRtlKNRgyA 39 (90)
T 2wt7_B 20 KDEVIRLKQKRRTLKNRGYA 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHH
Confidence 34444555555555554433
No 152
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.24 E-value=1.6e+02 Score=31.41 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=6.2
Q ss_pred hHHHhhhCCC
Q 005229 398 LVLHAMSGFY 407 (707)
Q Consensus 398 lVLd~~~~~~ 407 (707)
||-++++||-
T Consensus 130 lv~~~l~G~n 139 (412)
T 3u06_A 130 LIQSALDGYN 139 (412)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHCCCc
Confidence 6666666653
No 153
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.17 E-value=3e+02 Score=22.95 Aligned_cols=15 Identities=7% Similarity=-0.011 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 005229 54 CQAYQKELRLWKNLI 68 (707)
Q Consensus 54 ~~~~~~el~~l~~~i 68 (707)
++.++.++..+...|
T Consensus 17 Fe~YE~df~~l~~~i 31 (102)
T 2qyw_A 17 FEKLHEIFRGLLEDL 31 (102)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 154
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.96 E-value=2.3e+02 Score=30.77 Aligned_cols=10 Identities=20% Similarity=0.670 Sum_probs=5.2
Q ss_pred hHHHhhhCCc
Q 005229 505 PKLRRTLGFA 514 (707)
Q Consensus 505 ~~l~~~lgl~ 514 (707)
-.++..|||-
T Consensus 347 e~il~~LGLp 356 (484)
T 3lss_A 347 EEFNKSLGLP 356 (484)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHcCCc
Confidence 3455556653
No 155
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=24.68 E-value=1.3e+02 Score=32.25 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 189 SMRKQQKKYFDDVELKKRELNEIRKYIE 216 (707)
Q Consensus 189 ~~~~ei~el~~ele~k~~e~~e~~~ei~ 216 (707)
.++++...+..+++.++.+.+.+.++|.
T Consensus 34 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 61 (425)
T 2dq3_A 34 ELDKRRREIIKRLEALRSERNKLSKEIG 61 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 156
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.25 E-value=2e+02 Score=20.73 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 178 NEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRK 213 (707)
Q Consensus 178 ~eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ 213 (707)
.+++.++.+-.-++.++++....+..++.+-..+..
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLETEASNMKE 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH
Confidence 333333333333444444444444444444333333
No 157
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=23.87 E-value=63 Score=32.84 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=27.8
Q ss_pred eeeEcCCCceEEEEecCCCCcccccCCCCcHHHHHHHHHHHHHH
Q 005229 641 GVRQRPWGKWAAEIRDPKKAARIWLGTFDTAEAAALAYDEAALR 684 (707)
Q Consensus 641 GV~~~~~g~w~a~i~~~~~~~~~~lG~f~t~e~Aa~ayd~aa~~ 684 (707)
||+.++.|.|..+... .|+++.+|. |..+|..+...+...
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~ 54 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIE 54 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHH
Confidence 5777888999987644 455888996 877776665544333
No 158
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.23 E-value=1.9e+02 Score=20.11 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 005229 55 QAYQKELRLWKNLI 68 (707)
Q Consensus 55 ~~~~~el~~l~~~i 68 (707)
...-.++...+++|
T Consensus 12 ~kVdrEI~Kte~kI 25 (42)
T 2l5g_B 12 DRVDREITMVEQQI 25 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 159
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=23.01 E-value=3.7e+02 Score=23.24 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 005229 55 QAYQKELRLW 64 (707)
Q Consensus 55 ~~~~~el~~l 64 (707)
..++.++..|
T Consensus 12 ~~LEaeyq~L 21 (119)
T 2avr_X 12 QALDAEYQNL 21 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 160
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.55 E-value=1.3e+02 Score=31.93 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=6.6
Q ss_pred hhHHHHhhcCCccc
Q 005229 519 GLQCSTTAEGRSAP 532 (707)
Q Consensus 519 ~~i~~li~~g~~~~ 532 (707)
++|..|..+..+||
T Consensus 320 ~vI~aL~~~~~hiP 333 (412)
T 3u06_A 320 NVILALLQKQDHIP 333 (412)
T ss_dssp HHHHHHHTTCSCCC
T ss_pred HHHHHHhccCCCCC
Confidence 44555554444443
No 161
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=22.43 E-value=4.5e+02 Score=23.99 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhhH
Q 005229 315 LKEREFEKRVKEF 327 (707)
Q Consensus 315 ~~e~~~~~~~~E~ 327 (707)
.+-..|.....+|
T Consensus 130 ~L~~kf~~~m~~y 142 (180)
T 1s94_A 130 TISRKFVEVMSDY 142 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333344444
No 162
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=22.24 E-value=2.1e+02 Score=20.10 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 66 NLIEECYDEVELREKKVGEAQRSIEEQ 92 (707)
Q Consensus 66 ~~i~e~~~e~~~~~~ei~~le~~i~e~ 92 (707)
+-+..++++-..+++.|..++++|..+
T Consensus 24 nivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 24 NIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 163
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=22.21 E-value=1.9e+02 Score=21.64 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005229 175 LHENEVESLEQKLDSMRKQQKK 196 (707)
Q Consensus 175 ~~~~eL~~~e~el~~~~~ei~e 196 (707)
.++.+|...+.++.....+.++
T Consensus 11 ~le~el~~~r~e~~~q~~eYq~ 32 (59)
T 1gk6_A 11 ELLSKNYHLENEVARLKKLVGD 32 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 164
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=22.04 E-value=4.9e+02 Score=24.28 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 005229 61 LRLWKNLIEECYDE 74 (707)
Q Consensus 61 l~~l~~~i~e~~~e 74 (707)
+..+..........
T Consensus 37 ~~~l~~~a~~~~eq 50 (191)
T 1nfn_A 37 LRWVQTLSEQVQEE 50 (191)
T ss_dssp HHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 165
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=22.04 E-value=57 Score=25.87 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhhhcccCcHHH
Q 005229 446 RDEAMKVAGEWKKKMRVAVENSLEV 470 (707)
Q Consensus 446 ~~~A~~~A~~Wk~~~~~~~~~~l~a 470 (707)
+++|+.+|.+|..+|...+...|+.
T Consensus 44 ~e~Ak~~AIef~k~le~~Gr~~~~~ 68 (77)
T 3igm_B 44 KEKARLAAVEFMKTVENNGRKKLEP 68 (77)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCC---
T ss_pred HHHHHHHHHHHHHHHHhcCceecCC
Confidence 5899999999999998766655543
No 166
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.61 E-value=3.9e+02 Score=25.22 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005229 71 CYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLI 110 (707)
Q Consensus 71 ~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i 110 (707)
...+...+..+|..++.+|..++.++.++..-++..+...
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la 152 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMA 152 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555444444444443333
No 167
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.41 E-value=1.2e+02 Score=23.48 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005229 68 IEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQ 107 (707)
Q Consensus 68 i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~ 107 (707)
.+++...+......|.+|+..+.....+|.++...+..++
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 168
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.40 E-value=3.5e+02 Score=22.47 Aligned_cols=72 Identities=11% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHH
Q 005229 57 YQKELRLWKNLIEECYDEVELR-----EKKVGEAQRSIEEQEKQLAFKESKISS--------MQTLIEENEGLLKDKEKL 123 (707)
Q Consensus 57 ~~~el~~l~~~i~e~~~e~~~~-----~~ei~~le~~i~e~~~el~ele~ei~~--------l~~~i~e~~~~l~~~e~e 123 (707)
++.++..+...|...-..+..+ ...|..++..+++...-|.+++-++.. +...+..+..++..+..+
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETD 89 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 005229 124 YDEVK 128 (707)
Q Consensus 124 ~~~l~ 128 (707)
++.+.
T Consensus 90 lk~~~ 94 (102)
T 1vcs_A 90 FKRSR 94 (102)
T ss_dssp THHHH
T ss_pred HHHHH
No 169
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=21.28 E-value=6.5e+02 Score=25.49 Aligned_cols=230 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005229 50 WINKCQAYQKELRLWKNLIEECYDEVELREKKVGEAQRSIEEQEKQLAFKESKISSMQTLIEENEGLLKDKEKLYDEVKN 129 (707)
Q Consensus 50 ~~~~~~~~~~el~~l~~~i~e~~~e~~~~~~ei~~le~~i~e~~~el~ele~ei~~l~~~i~e~~~~l~~~e~e~~~l~~ 129 (707)
+..-...+..-+..+......+..-...+..-+..+.....+....+.+....+..+...+.+.................
T Consensus 43 ~n~~~~~l~~~i~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 122 (341)
T 3zx6_A 43 IERLRRSLMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASE 122 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-------------------------------HHHHHHHHHHHHHHH
Q 005229 130 SLMLCETKLECEKKELELTQSSIKELSMEFHSEE-------------------------------EKLELLQGKVRLHEN 178 (707)
Q Consensus 130 ele~le~el~~~~~Ele~~e~~i~~l~~ele~~e-------------------------------~~l~~le~el~~~~~ 178 (707)
........+......+..+......+..-+..+. .++..+-++-.....
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~~~I~~IA~QTNLLALNAaIEAARAGE~GrGFAVVAdEVRkLAe~t~~at~ 202 (341)
T 3zx6_A 123 TAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAR 202 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHhHHHHHHHHHHHhhhchhhHHhhhhhhhhHH
Q 005229 179 EVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELNQDPASKDKELRFVQQSIEECSKEIPGKKEELISKGKTIA 258 (707)
Q Consensus 179 eL~~~e~el~~~~~ei~el~~ele~k~~e~~e~~~ei~~l~~eie~~~~el~~~~~~le~l~~El~~l~~Ele~l~~~l~ 258 (707)
+|... +......++.....+.....-+..+...+..+...+.......+......+.+...+..+..-.+.....+.
T Consensus 203 ~I~~~---i~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~ 279 (341)
T 3zx6_A 203 EIKSL---IEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVE 279 (341)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhHHHHhhhhhh
Q 005229 259 ECSKEVELKKNQLNLIQDKSSLFQ 282 (707)
Q Consensus 259 e~~~~le~k~~ele~l~~~le~le 282 (707)
+...-...+......+...+..+.
T Consensus 280 ~~~~~~~~l~~~a~~L~~~v~~Fk 303 (341)
T 3zx6_A 280 ESAAAAAALEEQASRLTEAVAVFR 303 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
No 170
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=20.44 E-value=6.8e+02 Score=25.33 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=13.4
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHhhhHH
Q 005229 248 EELISKGKTIAECSKEVELKKNQLNLI 274 (707)
Q Consensus 248 ~Ele~l~~~l~e~~~~le~k~~ele~l 274 (707)
.+++.++..+..........++++...
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~ 218 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKS 218 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555544433
No 171
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.21 E-value=4.3e+02 Score=26.85 Aligned_cols=22 Identities=0% Similarity=0.223 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 005229 137 KLECEKKELELTQSSIKELSME 158 (707)
Q Consensus 137 el~~~~~Ele~~e~~i~~l~~e 158 (707)
++..++.++...+..++.++..
T Consensus 130 ~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 130 EMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444333
Done!