BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005230
         (707 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2
          Length = 3075

 Score = 35.4 bits (80), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 347 IIQPVEIHSFAADCNTDDLLCVQIRNVSPAHAPDIVLYIDAITIVFEEASKGGPSSPLPI 406
           I QP E H  AA+CN   +      N +  H          +   + E S+G P    P 
Sbjct: 738 ICQPCECHGHAAECNVHGVCIACAHNTTGVHCE------QCLPGFYGEPSRGTPGDCQPC 791

Query: 407 AC-IEAGNDHNLPNLALRRGEE 427
           AC +   +++  P   L  G+E
Sbjct: 792 ACPLTIASNNFSPTCHLNDGDE 813


>sp|Q2U9C3|RRP36_ASPOR rRNA biogenesis protein rrp36 OS=Aspergillus oryzae (strain ATCC
           42149 / RIB 40) GN=rrp36 PE=3 SV=1
          Length = 352

 Score = 32.7 bits (73), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 45  SEEKIDLRKDI-SVSESLLRMEDHKRQTETLLHRFKNSHFFVRIAESGEPLWSKKSD 100
           +EEK  L+++I S S+ L  ME+ +R+ E L    K     +R  +   P + KKSD
Sbjct: 237 AEEKEALKREIRSTSDRLRAMENRRREEEVLAEHKKREKQLIREGKKSNPYFLKKSD 293


>sp|B8NDQ2|RRP36_ASPFN rRNA biogenesis protein rrp36 OS=Aspergillus flavus (strain ATCC
           200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
           GN=rrp36 PE=3 SV=1
          Length = 352

 Score = 32.7 bits (73), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 45  SEEKIDLRKDI-SVSESLLRMEDHKRQTETLLHRFKNSHFFVRIAESGEPLWSKKSD 100
           +EEK  L+++I S S+ L  ME+ +R+ E L    K     +R  +   P + KKSD
Sbjct: 237 AEEKEALKREIRSTSDRLRAMENRRREEEVLAEHKKREKQLIREGKKSNPYFLKKSD 293


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,282,360
Number of Sequences: 539616
Number of extensions: 10985146
Number of successful extensions: 30403
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 30292
Number of HSP's gapped (non-prelim): 163
length of query: 707
length of database: 191,569,459
effective HSP length: 125
effective length of query: 582
effective length of database: 124,117,459
effective search space: 72236361138
effective search space used: 72236361138
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)