Query 005230
Match_columns 707
No_of_seqs 18 out of 20
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 19:18:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005230.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005230hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a0ia2 d.142.2.1 (A:2-240) AT 32.3 5.8 0.00042 34.0 0.7 14 331-345 223-238 (239)
2 d2bnqd1 b.1.1.1 (D:2-114) T-ce 27.3 23 0.0016 27.5 3.4 63 482-548 20-86 (113)
3 d1jfla2 c.78.2.1 (A:116-228) A 24.3 4.4 0.00032 31.7 -1.4 8 636-643 77-84 (113)
4 d2bmwa1 b.43.4.2 (A:9-141) Fer 24.3 9.6 0.0007 31.2 0.7 12 259-270 67-78 (133)
5 d1mqkh_ b.1.1.1 (H:) Immunoglo 22.0 49 0.0036 27.9 4.8 40 533-572 78-123 (123)
6 d1b74a2 c.78.2.1 (A:106-252) G 15.8 13 0.00095 31.5 -0.4 10 635-644 70-80 (147)
7 d1smoa_ b.1.1.1 (A:) TREM-1 (t 11.0 1.5E+02 0.011 22.3 4.7 18 533-550 75-92 (113)
8 d3adka_ c.37.1.1 (A:) Adenylat 10.9 70 0.0051 25.9 2.9 27 62-88 148-174 (194)
9 d1sqwa1 b.122.1.1 (A:95-170) N 10.4 36 0.0026 27.3 0.7 29 142-170 48-76 (76)
10 d2piaa1 b.43.4.2 (A:1-103) Pht 9.8 40 0.0029 26.3 0.8 12 259-270 53-64 (103)
No 1
>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal domain {Bacteriophage T7 [TaxId: 10760]}
Probab=32.31 E-value=5.8 Score=34.00 Aligned_cols=14 Identities=36% Similarity=0.798 Sum_probs=10.1
Q ss_pred cceeeeCCcc--cceee
Q 005230 331 LEGIYVPGRR--WRRKL 345 (707)
Q Consensus 331 LEGiyiPGrR--WrRKl 345 (707)
+.+.|.|||| |. |+
T Consensus 223 ~~s~Y~~GR~~~w~-K~ 238 (239)
T d1a0ia2 223 PMCIYKRGKKSGWW-KM 238 (239)
T ss_dssp TTCEECSEEEEEEE-EE
T ss_pred CCCccCCCCCCCcE-Ee
Confidence 3567999997 75 54
No 2
>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}
Probab=27.25 E-value=23 Score=27.46 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=31.0
Q ss_pred eeecccccee----eecCCCCcccCCCcceEEEeeccccCCCCCcccccccCceEEEEEEecCCCccccee
Q 005230 482 CRCNYTESRL----FFKQPTSWRPRISRDLMISVASEISGQSSEANERVTQLPVQVLTLQASNLTSQDLTL 548 (707)
Q Consensus 482 crCnyTeSrL----FFKQpTsWRPr~srDLmISVaSEmS~q~~g~~~r~~QLPvQVLTLqAsNLTsedLtL 548 (707)
-.|+|+.+-. +|||. |.-+.+++|.+.+.......+.......---...+|+-.||+.+|--+
T Consensus 20 L~C~~s~~~~~~~~Wyrq~----~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~ 86 (113)
T d2bnqd1 20 LNCSFTDSAIYNLQWFRQD----PGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSAT 86 (113)
T ss_dssp EEEEESCCCEEEEEEEEEC----TTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred EEEEEecCcccCCeEEEec----cccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcE
Confidence 3455544332 47764 777788999887643221111110000000123466667777777433
No 3
>d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.35 E-value=4.4 Score=31.68 Aligned_cols=8 Identities=38% Similarity=0.837 Sum_probs=6.7
Q ss_pred Cccceeee
Q 005230 636 LGCTHLWL 643 (707)
Q Consensus 636 lgCTHLWL 643 (707)
||||||.|
T Consensus 77 LGCTelpl 84 (113)
T d1jfla2 77 AGCTEVSV 84 (113)
T ss_dssp ECSHHHHH
T ss_pred EccccHHH
Confidence 69999965
No 4
>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}
Probab=24.28 E-value=9.6 Score=31.24 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=10.2
Q ss_pred ccccccCCCCCC
Q 005230 259 HFRSYSMSSLPQ 270 (707)
Q Consensus 259 hFRSYSMsslP~ 270 (707)
+.|+|||+|.|.
T Consensus 67 ~~R~YSias~p~ 78 (133)
T d2bmwa1 67 KLRLYSIASTRH 78 (133)
T ss_dssp CCEEEEBCSCTT
T ss_pred ceeeeeecCCCc
Confidence 479999999865
No 5
>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}
Probab=22.05 E-value=49 Score=27.92 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=29.9
Q ss_pred EEEEEecCCCcccceeEEeecCCCC------CCCceEeccCCCCCC
Q 005230 533 VLTLQASNLTSQDLTLTVLAPTSFT------YPPSVVSLNSSPTSP 572 (707)
Q Consensus 533 VLTLqAsNLTsedLtLTVLAPasft------sppSVvsLnSaPttP 572 (707)
.+.||-+||++||--+---|-.... ++=..|+.+||+++|
T Consensus 78 t~~L~i~~L~~eDtAvYYCAr~~~~~~~d~WG~GT~VTVsSa~~~p 123 (123)
T d1mqkh_ 78 TLYLQMSSLKSEDTAMYYCVRHEYYYAMDYWGQGTTVTVSSAWRHP 123 (123)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCCC
T ss_pred ccccceeeeccCcccceeEEecCCCccccccCCCEEEEEeCCCCCC
Confidence 4789999999999877655533221 445679999999998
No 6
>d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=15.79 E-value=13 Score=31.47 Aligned_cols=10 Identities=60% Similarity=1.029 Sum_probs=7.8
Q ss_pred CCcccee-eec
Q 005230 635 GLGCTHL-WLQ 644 (707)
Q Consensus 635 glgCTHL-WLQ 644 (707)
=|||||+ ||+
T Consensus 70 vLGCTHyP~l~ 80 (147)
T d1b74a2 70 ILGCTHYPLLK 80 (147)
T ss_dssp EECCCCTTSCH
T ss_pred EEecCcchhHH
Confidence 4899999 654
No 7
>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.95 E-value=1.5e+02 Score=22.29 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=13.1
Q ss_pred EEEEEecCCCcccceeEE
Q 005230 533 VLTLQASNLTSQDLTLTV 550 (707)
Q Consensus 533 VLTLqAsNLTsedLtLTV 550 (707)
.++|+-+||+.+|=-+--
T Consensus 75 ~~~Lti~~l~~~Dsg~Y~ 92 (113)
T d1smoa_ 75 LLRVRMVNLQVEDSGLYQ 92 (113)
T ss_dssp EEEEEECSCCGGGCEEEE
T ss_pred EEEEEEccCCcccCceEE
Confidence 467888899998865443
No 8
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=10.91 E-value=70 Score=25.94 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=24.2
Q ss_pred hhhhhhhHhHHHHHHHhccCceEEEEc
Q 005230 62 LRMEDHKRQTETLLHRFKNSHFFVRIA 88 (707)
Q Consensus 62 LrmEdhKrqte~lLqrF~~ShFFVrIa 88 (707)
-|++.++++++-+++.|++.+.++.|-
T Consensus 148 ~R~~~y~~~~~~~~~~y~~~~~~~~Id 174 (194)
T d3adka_ 148 KRLETYYKATEPVIAFYEKRGIVRKVN 174 (194)
T ss_dssp HHHHHHHHHTHHHHHHHTTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 589999999999999999988888774
No 9
>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.40 E-value=36 Score=27.30 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.5
Q ss_pred ccccccccceeeeeccCCCEEEEEEEEee
Q 005230 142 LSGGVARNIVKCCSLSNGDIVVLLQVNVG 170 (707)
Q Consensus 142 ~sGGvARn~v~ccaL~NGDIVVlLQVnVg 170 (707)
--|=.||++..|-.|...+|||.=|.-+|
T Consensus 48 GFGvaakst~e~r~~dp~~ivv~hQaDiG 76 (76)
T d1sqwa1 48 GFGVAAKSTQDCRKVDPMAIVVFHQADIG 76 (76)
T ss_dssp EEEEESSCHHHHHHSCTTSEEEEEEEEGG
T ss_pred ceeeeccCHHHHhhCCCccEEEEEecCCC
Confidence 34667899999999999999999998776
No 10
>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}
Probab=9.79 E-value=40 Score=26.29 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=9.6
Q ss_pred ccccccCCCCCC
Q 005230 259 HFRSYSMSSLPQ 270 (707)
Q Consensus 259 hFRSYSMsslP~ 270 (707)
-.|+|||+|.|.
T Consensus 53 ~~R~YSl~s~p~ 64 (103)
T d2piaa1 53 SRRTYSLCNDSQ 64 (103)
T ss_dssp CEEEEECCSCTT
T ss_pred eeEEEEEecCCC
Confidence 469999999853
Done!