Query 005232
Match_columns 707
No_of_seqs 191 out of 1382
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 20:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 8.1E-73 1.8E-77 599.2 59.8 656 3-707 5-733 (982)
2 KOG2081 Nuclear transport regu 100.0 3.2E-71 7E-76 566.8 48.1 549 24-631 2-558 (559)
3 KOG2021 Nuclear mRNA export fa 100.0 2.1E-47 4.6E-52 398.0 49.5 580 4-634 2-644 (980)
4 COG5101 CRM1 Importin beta-rel 100.0 8.1E-40 1.8E-44 334.9 46.4 613 4-640 13-680 (1053)
5 KOG2171 Karyopherin (importin) 100.0 1.6E-37 3.5E-42 342.4 47.2 554 3-684 2-570 (1075)
6 KOG1992 Nuclear export recepto 100.0 1.4E-33 3E-38 298.5 41.8 586 1-687 1-650 (960)
7 KOG1991 Nuclear transport rece 100.0 2.1E-32 4.6E-37 296.2 49.5 615 6-703 5-667 (1010)
8 KOG2023 Nuclear transport rece 100.0 7.5E-34 1.6E-38 293.6 30.4 566 6-685 14-616 (885)
9 KOG1241 Karyopherin (importin) 100.0 3.4E-26 7.4E-31 241.3 45.8 564 17-699 12-618 (859)
10 KOG2020 Nuclear transport rece 99.9 1.2E-23 2.5E-28 238.1 42.6 604 5-639 10-659 (1041)
11 COG5656 SXM1 Importin, protein 99.9 1.3E-19 2.9E-24 190.7 47.0 605 17-703 14-666 (970)
12 COG5215 KAP95 Karyopherin (imp 99.9 1.5E-19 3.3E-24 185.1 45.3 552 17-688 16-609 (858)
13 KOG2274 Predicted importin 9 [ 99.7 1.5E-13 3.3E-18 149.0 45.3 592 5-706 4-688 (1005)
14 PF08389 Xpo1: Exportin 1-like 99.7 1.7E-17 3.6E-22 153.1 10.4 141 98-243 1-148 (148)
15 KOG1410 Nuclear transport rece 99.7 7.1E-12 1.5E-16 131.5 51.0 338 1-347 1-386 (1082)
16 KOG1993 Nuclear transport rece 99.7 5.8E-13 1.3E-17 142.3 38.6 584 7-665 2-647 (978)
17 COG5657 CSE1 CAS/CSE protein i 99.6 4E-12 8.7E-17 138.6 34.7 129 1-136 1-134 (947)
18 PF08506 Cse1: Cse1; InterPro 99.3 5.7E-11 1.2E-15 124.1 18.9 203 318-558 143-370 (370)
19 PF03810 IBN_N: Importin-beta 99.1 1.4E-10 3.1E-15 93.3 7.2 67 26-92 1-76 (77)
20 KOG2171 Karyopherin (importin) 99.0 4E-05 8.7E-10 87.4 45.2 210 464-686 400-616 (1075)
21 KOG1241 Karyopherin (importin) 98.8 0.00017 3.7E-09 78.6 39.4 460 140-662 320-814 (859)
22 KOG1824 TATA-binding protein-i 98.1 0.036 7.8E-07 62.5 44.6 518 43-633 7-622 (1233)
23 COG5215 KAP95 Karyopherin (imp 97.8 0.073 1.6E-06 56.9 31.3 187 470-662 615-812 (858)
24 KOG2023 Nuclear transport rece 97.8 0.049 1.1E-06 59.2 29.2 142 467-614 676-822 (885)
25 PF03378 CAS_CSE1: CAS/CSE pro 97.6 0.00016 3.5E-09 77.6 8.0 113 566-690 17-131 (435)
26 KOG1242 Protein containing ada 97.4 0.0025 5.3E-08 68.8 13.2 165 429-612 239-447 (569)
27 KOG1824 TATA-binding protein-i 97.2 0.64 1.4E-05 53.0 42.0 161 465-633 491-662 (1233)
28 PF01602 Adaptin_N: Adaptin N 97.1 0.68 1.5E-05 52.1 38.1 452 16-603 52-518 (526)
29 KOG0915 Uncharacterized conser 97.0 0.049 1.1E-06 64.6 19.5 136 448-585 1036-1182(1702)
30 PF12755 Vac14_Fab1_bd: Vacuol 96.2 0.019 4.1E-07 47.8 6.9 76 509-586 3-79 (97)
31 KOG0213 Splicing factor 3b, su 96.1 3.2 6.9E-05 46.4 29.9 171 429-612 736-915 (1172)
32 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.018 4E-07 47.9 6.2 91 470-562 3-95 (97)
33 KOG1991 Nuclear transport rece 95.9 4.9 0.00011 46.5 46.0 390 197-638 108-559 (1010)
34 PF12348 CLASP_N: CLASP N term 95.9 0.17 3.7E-06 49.9 13.5 162 464-639 18-190 (228)
35 PF12460 MMS19_C: RNAPII trans 95.8 3.7 8E-05 44.5 32.0 197 465-682 202-412 (415)
36 PTZ00429 beta-adaptin; Provisi 95.3 7.7 0.00017 45.1 42.5 126 16-153 78-208 (746)
37 PF13513 HEAT_EZ: HEAT-like re 95.0 0.023 5E-07 41.8 3.1 54 506-561 1-55 (55)
38 KOG1242 Protein containing ada 94.8 0.39 8.4E-06 52.4 12.5 227 429-688 195-427 (569)
39 PF01602 Adaptin_N: Adaptin N 94.1 4.3 9.4E-05 45.6 20.2 143 445-610 76-222 (526)
40 PF08767 CRM1_C: CRM1 C termin 94.1 1.9 4.2E-05 44.8 15.8 170 194-386 43-221 (319)
41 cd00020 ARM Armadillo/beta-cat 93.9 0.13 2.9E-06 44.4 6.0 95 465-563 19-120 (120)
42 smart00802 UME Domain in UVSB 93.6 0.97 2.1E-05 38.3 10.2 91 533-630 9-104 (107)
43 PF08064 UME: UME (NUC010) dom 93.4 0.83 1.8E-05 38.9 9.7 92 533-631 9-105 (107)
44 KOG1062 Vesicle coat complex A 92.9 20 0.00044 40.8 37.0 59 505-564 479-545 (866)
45 PF13513 HEAT_EZ: HEAT-like re 92.8 0.069 1.5E-06 39.2 1.9 53 467-519 1-55 (55)
46 PRK09687 putative lyase; Provi 92.4 14 0.0003 37.6 19.8 137 439-607 49-186 (280)
47 PF02985 HEAT: HEAT repeat; I 92.0 0.19 4.2E-06 31.8 3.0 30 536-565 1-31 (31)
48 PF12719 Cnd3: Nuclear condens 91.9 13 0.00027 38.4 17.9 188 473-690 3-211 (298)
49 PF10508 Proteasom_PSMB: Prote 90.4 8.4 0.00018 42.9 15.9 131 466-610 51-190 (503)
50 PF03378 CAS_CSE1: CAS/CSE pro 89.9 5.4 0.00012 43.3 13.4 76 551-633 176-253 (435)
51 KOG1059 Vesicle coat complex A 89.4 42 0.00092 37.9 32.5 219 82-344 144-364 (877)
52 PF12717 Cnd1: non-SMC mitotic 89.3 8.5 0.00018 36.2 12.8 145 473-626 8-154 (178)
53 KOG0212 Uncharacterized conser 88.8 41 0.00088 36.9 22.1 95 491-586 205-302 (675)
54 PF10274 ParcG: Parkin co-regu 88.7 3.2 7E-05 38.7 9.1 89 533-626 36-128 (183)
55 PF08167 RIX1: rRNA processing 88.4 8.8 0.00019 35.6 12.0 132 445-583 22-163 (165)
56 PF04826 Arm_2: Armadillo-like 88.0 30 0.00066 34.5 16.8 134 465-610 25-164 (254)
57 KOG0168 Putative ubiquitin fus 87.8 18 0.0004 41.4 15.5 29 676-706 335-363 (1051)
58 PF12460 MMS19_C: RNAPII trans 87.6 34 0.00073 37.1 17.9 193 429-628 210-412 (415)
59 PF14500 MMS19_N: Dos2-interac 86.9 25 0.00055 35.3 15.0 145 504-664 11-155 (262)
60 COG5064 SRP1 Karyopherin (impo 86.7 8.9 0.00019 39.0 11.3 158 468-633 172-345 (526)
61 KOG0213 Splicing factor 3b, su 86.3 66 0.0014 36.6 30.4 262 372-706 792-1064(1172)
62 KOG1248 Uncharacterized conser 85.7 49 0.0011 39.6 18.1 153 429-585 717-879 (1176)
63 KOG0166 Karyopherin (importin) 83.9 18 0.00038 39.6 12.9 134 547-705 124-264 (514)
64 PF13646 HEAT_2: HEAT repeats; 83.6 11 0.00024 30.2 9.1 87 8-110 2-88 (88)
65 PF05918 API5: Apoptosis inhib 83.5 27 0.0006 38.8 14.4 168 508-706 75-253 (556)
66 COG5181 HSH155 U2 snRNP splice 83.1 83 0.0018 35.0 23.8 124 429-567 750-874 (975)
67 PF12717 Cnd1: non-SMC mitotic 83.0 41 0.00089 31.5 17.0 54 505-564 1-55 (178)
68 PF08623 TIP120: TATA-binding 81.7 7.4 0.00016 35.9 7.9 77 506-586 41-117 (169)
69 PRK09687 putative lyase; Provi 81.5 65 0.0014 32.7 17.8 92 10-113 28-119 (280)
70 PF08064 UME: UME (NUC010) dom 81.1 22 0.00047 30.2 10.1 84 568-666 4-87 (107)
71 KOG1059 Vesicle coat complex A 80.5 80 0.0017 35.9 16.2 93 476-579 129-226 (877)
72 PF13646 HEAT_2: HEAT repeats; 79.9 5.5 0.00012 32.0 6.0 57 6-64 31-87 (88)
73 smart00802 UME Domain in UVSB 79.0 31 0.00068 29.2 10.2 84 568-666 4-87 (107)
74 KOG2753 Uncharacterized conser 78.9 68 0.0015 32.8 13.9 74 532-612 104-179 (378)
75 KOG4224 Armadillo repeat prote 78.9 28 0.00061 35.9 11.4 182 5-206 250-487 (550)
76 KOG0212 Uncharacterized conser 78.8 23 0.0005 38.7 11.4 118 467-586 14-136 (675)
77 PF12348 CLASP_N: CLASP N term 78.5 34 0.00074 33.4 12.3 130 471-612 71-209 (228)
78 KOG0915 Uncharacterized conser 78.2 1.9E+02 0.0041 36.1 31.6 189 372-581 1165-1362(1702)
79 KOG1967 DNA repair/transcripti 78.1 41 0.00089 39.1 13.5 85 471-556 924-1017(1030)
80 KOG2021 Nuclear mRNA export fa 77.7 1.4E+02 0.003 34.3 23.0 140 445-586 638-791 (980)
81 KOG1058 Vesicle coat complex C 74.3 36 0.00078 38.6 11.6 152 314-524 315-466 (948)
82 KOG0166 Karyopherin (importin) 73.8 47 0.001 36.5 12.2 154 468-636 167-331 (514)
83 COG5064 SRP1 Karyopherin (impo 73.8 1E+02 0.0022 31.7 13.6 139 465-617 128-279 (526)
84 PF10363 DUF2435: Protein of u 71.9 38 0.00083 27.8 8.7 75 544-624 12-87 (92)
85 PLN03200 cellulose synthase-in 71.8 3.3E+02 0.0071 35.9 47.8 208 467-702 460-675 (2102)
86 KOG4653 Uncharacterized conser 71.5 2.1E+02 0.0045 33.5 17.8 150 474-637 789-945 (982)
87 KOG2213 Apoptosis inhibitor 5/ 71.4 1.3E+02 0.0028 31.7 13.9 180 507-706 39-225 (460)
88 KOG1943 Beta-tubulin folding c 70.7 1.4E+02 0.0031 35.6 15.7 132 468-611 443-613 (1133)
89 KOG2022 Nuclear transport rece 68.8 2.4E+02 0.0052 33.1 16.8 157 503-684 478-641 (982)
90 PF10508 Proteasom_PSMB: Prote 68.7 2E+02 0.0043 32.1 23.7 188 429-640 58-257 (503)
91 COG5181 HSH155 U2 snRNP splice 68.6 2E+02 0.0044 32.2 18.1 143 429-587 301-453 (975)
92 KOG0168 Putative ubiquitin fus 67.9 2.5E+02 0.0054 32.9 18.1 205 467-690 226-440 (1051)
93 cd08050 TAF6 TATA Binding Prot 66.7 1E+02 0.0022 32.4 12.9 141 448-605 178-336 (343)
94 KOG0889 Histone acetyltransfer 61.4 4E+02 0.0088 36.6 18.4 251 445-706 1030-1305(3550)
95 PF13251 DUF4042: Domain of un 60.7 1.5E+02 0.0033 27.9 12.1 86 545-637 50-156 (182)
96 cd00020 ARM Armadillo/beta-cat 59.6 44 0.00095 28.2 7.5 99 8-112 9-118 (120)
97 PF10521 DUF2454: Protein of u 57.7 1.6E+02 0.0035 29.9 12.2 151 532-688 116-277 (282)
98 PF09184 PPP4R2: PPP4R2; Inte 54.1 1.1E+02 0.0024 31.2 10.1 105 4-111 2-109 (288)
99 KOG0414 Chromosome condensatio 54.1 1E+02 0.0022 37.1 10.9 89 429-519 897-988 (1251)
100 COG5240 SEC21 Vesicle coat com 53.6 1.4E+02 0.0031 33.0 10.9 86 471-562 466-554 (898)
101 KOG1248 Uncharacterized conser 53.1 5E+02 0.011 31.7 40.8 154 470-629 714-876 (1176)
102 KOG2160 Armadillo/beta-catenin 53.0 2.4E+02 0.0053 29.3 12.3 140 464-614 94-245 (342)
103 KOG1240 Protein kinase contain 52.3 73 0.0016 38.4 9.3 101 505-617 630-733 (1431)
104 KOG1240 Protein kinase contain 51.8 2.8E+02 0.006 33.9 13.7 54 505-562 436-490 (1431)
105 PLN03200 cellulose synthase-in 50.2 7.6E+02 0.016 32.8 47.9 152 465-630 542-702 (2102)
106 PF11865 DUF3385: Domain of un 49.0 2.1E+02 0.0047 26.2 12.3 104 574-690 9-142 (160)
107 PF14668 RICTOR_V: Rapamycin-i 48.6 25 0.00053 27.5 3.4 52 469-521 3-58 (73)
108 PF11865 DUF3385: Domain of un 48.5 77 0.0017 29.1 7.4 73 533-610 84-158 (160)
109 KOG0392 SNF2 family DNA-depend 45.8 6E+02 0.013 31.5 15.1 99 504-612 828-928 (1549)
110 PF04826 Arm_2: Armadillo-like 44.6 3.1E+02 0.0068 27.4 11.5 97 9-112 57-161 (254)
111 KOG4224 Armadillo repeat prote 42.9 86 0.0019 32.5 7.1 73 492-566 210-283 (550)
112 PF00514 Arm: Armadillo/beta-c 41.9 43 0.00094 22.4 3.6 26 537-562 14-40 (41)
113 KOG1020 Sister chromatid cohes 41.4 79 0.0017 39.1 7.6 77 504-615 867-944 (1692)
114 KOG1058 Vesicle coat complex C 41.3 68 0.0015 36.6 6.6 70 505-583 112-182 (948)
115 KOG1078 Vesicle coat complex C 39.9 2.3E+02 0.005 32.7 10.4 116 429-563 412-532 (865)
116 KOG2274 Predicted importin 9 [ 39.7 5.7E+02 0.012 30.3 13.5 139 489-631 525-695 (1005)
117 PF10274 ParcG: Parkin co-regu 39.6 3.3E+02 0.0071 25.6 10.0 88 489-582 37-131 (183)
118 KOG2753 Uncharacterized conser 39.5 2E+02 0.0044 29.6 9.0 34 592-625 58-91 (378)
119 KOG2956 CLIP-associating prote 39.0 5.5E+02 0.012 28.0 14.9 84 550-638 422-506 (516)
120 cd05134 RasGAP_RASA3 RASA3 (or 38.7 3.9E+02 0.0085 27.6 11.3 93 532-633 2-108 (310)
121 cd08050 TAF6 TATA Binding Prot 38.3 4.5E+02 0.0097 27.6 12.1 101 443-548 209-322 (343)
122 PF10441 Urb2: Urb2/Npa2 famil 37.0 4E+02 0.0087 25.9 18.6 56 566-625 146-201 (223)
123 KOG1967 DNA repair/transcripti 36.8 1.1E+02 0.0023 35.9 7.4 99 532-636 906-1005(1030)
124 KOG3723 PH domain protein Melt 35.8 2.4E+02 0.0051 31.2 9.3 67 473-548 182-249 (851)
125 KOG2160 Armadillo/beta-catenin 35.7 4.5E+02 0.0097 27.4 11.1 95 17-117 94-199 (342)
126 KOG2062 26S proteasome regulat 35.7 1.7E+02 0.0038 33.5 8.6 85 492-585 590-675 (929)
127 COG5240 SEC21 Vesicle coat com 35.7 2.5E+02 0.0055 31.2 9.5 125 429-568 395-521 (898)
128 cd05394 RasGAP_RASA2 RASA2 (or 34.6 4.8E+02 0.01 27.0 11.1 91 532-633 2-108 (313)
129 PF09384 UTP15_C: UTP15 C term 34.6 2.1E+02 0.0044 25.9 7.8 52 531-583 74-127 (148)
130 KOG2032 Uncharacterized conser 34.3 5.6E+02 0.012 28.1 11.7 119 465-586 229-353 (533)
131 KOG1060 Vesicle coat complex A 33.6 3.2E+02 0.0069 31.7 10.2 100 432-547 415-516 (968)
132 PF11698 V-ATPase_H_C: V-ATPas 33.2 1.2E+02 0.0025 26.3 5.5 66 6-73 44-119 (119)
133 PF01603 B56: Protein phosphat 32.8 6.6E+02 0.014 27.1 14.4 173 9-202 136-321 (409)
134 PF08767 CRM1_C: CRM1 C termin 31.9 6E+02 0.013 26.3 17.1 100 465-567 85-198 (319)
135 cd00864 PI3Ka Phosphoinositide 31.1 3.6E+02 0.0078 24.5 8.8 72 9-91 43-114 (152)
136 KOG2011 Sister chromatid cohes 31.0 1.1E+03 0.023 28.9 22.3 231 314-580 113-370 (1048)
137 PF07571 DUF1546: Protein of u 31.0 2.8E+02 0.006 22.7 7.3 67 504-573 18-89 (92)
138 KOG2025 Chromosome condensatio 30.5 9E+02 0.02 28.0 19.7 104 26-138 66-176 (892)
139 PF12530 DUF3730: Protein of u 30.0 5.4E+02 0.012 25.2 16.7 171 504-703 13-185 (234)
140 COG5656 SXM1 Importin, protein 29.9 9.4E+02 0.02 28.0 40.5 137 490-636 408-552 (970)
141 cd05128 RasGAP_GAP1_like The G 28.4 6.2E+02 0.013 26.2 11.0 93 532-632 2-108 (315)
142 PF05536 Neurochondrin: Neuroc 28.4 9E+02 0.02 27.3 16.1 187 468-664 114-328 (543)
143 KOG0567 HEAT repeat-containing 27.9 1.8E+02 0.004 28.9 6.5 84 470-570 173-257 (289)
144 COG5096 Vesicle coat complex, 27.8 1E+03 0.023 27.9 17.8 68 490-564 123-196 (757)
145 cd03568 VHS_STAM VHS domain fa 27.7 4.5E+02 0.0098 23.6 9.9 74 534-612 36-113 (144)
146 PF05004 IFRD: Interferon-rela 26.8 7.2E+02 0.016 25.6 13.4 113 574-702 43-155 (309)
147 KOG2137 Protein kinase [Signal 25.0 5.8E+02 0.013 29.4 10.5 184 472-706 274-457 (700)
148 COG5116 RPN2 26S proteasome re 24.3 3.2E+02 0.0068 30.4 8.0 88 490-586 585-673 (926)
149 PF05804 KAP: Kinesin-associat 24.2 1.2E+03 0.026 27.3 17.4 84 489-579 330-419 (708)
150 KOG1060 Vesicle coat complex A 24.1 1.2E+03 0.026 27.4 13.3 71 504-586 120-191 (968)
151 KOG2956 CLIP-associating prote 23.8 9.8E+02 0.021 26.2 14.8 179 4-207 285-477 (516)
152 KOG1992 Nuclear export recepto 23.6 1.3E+03 0.027 27.4 36.0 127 532-666 545-672 (960)
153 KOG2259 Uncharacterized conser 23.5 7.6E+02 0.016 28.2 10.7 160 402-600 383-544 (823)
154 COG5095 TAF6 Transcription ini 23.4 6.8E+02 0.015 25.5 9.5 98 466-568 211-321 (450)
155 KOG4541 Nuclear transport rece 22.2 1.1E+03 0.024 26.3 14.6 90 550-639 313-405 (748)
156 PF11229 DUF3028: Protein of u 22.0 1.1E+03 0.024 26.1 16.0 123 489-626 149-280 (589)
157 PF08158 NUC130_3NT: NUC130/3N 21.8 2.9E+02 0.0063 20.0 5.0 35 79-113 12-47 (52)
158 PF10521 DUF2454: Protein of u 21.5 6.9E+02 0.015 25.3 9.8 55 192-249 133-204 (282)
159 PF10363 DUF2435: Protein of u 21.3 4.6E+02 0.01 21.5 7.7 83 40-135 5-87 (92)
160 KOG2933 Uncharacterized conser 21.2 9.1E+02 0.02 24.9 11.5 73 505-579 101-174 (334)
161 PRK10236 hypothetical protein; 21.0 1.7E+02 0.0036 28.6 4.7 61 5-72 20-86 (237)
162 cd00870 PI3Ka_III Phosphoinosi 21.0 4.2E+02 0.009 24.5 7.3 46 18-65 58-103 (166)
163 cd00872 PI3Ka_I Phosphoinositi 20.9 4.1E+02 0.0088 24.7 7.2 45 19-65 52-96 (171)
164 PF01603 B56: Protein phosphat 20.7 1.1E+03 0.023 25.5 15.2 48 652-702 274-321 (409)
165 COG5096 Vesicle coat complex, 20.4 1.7E+02 0.0037 34.0 5.5 52 504-563 104-156 (757)
166 PF01465 GRIP: GRIP domain; I 20.3 2.1E+02 0.0046 20.0 4.0 33 78-113 3-35 (46)
167 KOG2032 Uncharacterized conser 20.2 1.2E+03 0.026 25.7 19.7 99 532-639 255-355 (533)
168 PF14500 MMS19_N: Dos2-interac 20.1 8.9E+02 0.019 24.3 17.8 141 464-612 10-156 (262)
169 KOG4820 Involved in anesthetic 20.0 2.4E+02 0.0051 30.8 6.0 104 514-617 460-581 (933)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-73 Score=599.22 Aligned_cols=656 Identities=21% Similarity=0.342 Sum_probs=540.3
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHH
Q 005232 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (707)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~ 82 (707)
+++.|++++..+|++++++..+.+++||++.|+||.+|++.++|++. ++..++|||||.||+.||+++|++++++++..
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~~~e~~~~~~~~q 83 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINTRWEECPANEAVQ 83 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHhhhccCChhHHHH
Confidence 48999999999999999999999999999999999999999999985 77789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC--CC-----CchhHHHHHhccchhhc
Q 005232 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS--HP-----EFVPGFLELLTVLPEEV 155 (707)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~--~~-----~~~~~~L~~L~~L~EE~ 155 (707)
|+.+++..+.+++.+|+.|.+|+|.++|.+++++-++.||+ .+.+++..++. +| ..+.++|+.|+.+|+|.
T Consensus 84 L~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~--ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~ 161 (982)
T KOG2022|consen 84 LKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPT--AIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEF 161 (982)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCc--hHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhh
Confidence 99999999999999999999999999999999999999999 88999888765 23 25789999999999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh----------HHHHHHHHHHHHHHhccCCCCCcccccchhHHH
Q 005232 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLT 225 (707)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~----------~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~ 225 (707)
.+..++ ..+|..++.+|.+....|..++..+++.. -....+++|..+|+++. ..+ ......+++.
T Consensus 162 q~~~l~--~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i-~~~--~~~c~~i~~~ 236 (982)
T KOG2022|consen 162 QHVTLP--LTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI-SLT--GMDCDQITQV 236 (982)
T ss_pred hhccch--hHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-ccc--cccHHHHHHH
Confidence 887654 56789999999999999999999888753 24678999999999953 233 2234556666
Q ss_pred HHhcCCC--CccHHHH---------------HHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhh----hHHHhccCCC
Q 005232 226 ALSSLHS--EILSEAS---------------VNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS----LKAHLTDSSK 284 (707)
Q Consensus 226 ~~~~L~~--~~~~~~a---------------~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~----l~~~l~~~~~ 284 (707)
++..++. ....+++ +...+..+....... .......+..++.+.++ ..+...+++.
T Consensus 237 ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~---y~nti~~li~i~~~~l~e~~~~~~~~e~~d~ 313 (982)
T KOG2022|consen 237 LLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEF---YRNTITLLISICLGILQEVSGKIQEEENADA 313 (982)
T ss_pred HHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 6666651 1112222 222222221111100 00111122223333221 1122233344
Q ss_pred CHHHHHHHHHHHHHHhhHHHHHHHcCC------cchHHHHHHHhhhcccCc-----hhhhhhhHHHHHHHHHHHhhccCc
Q 005232 285 DEEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHPE-----YDIASMTFNFWHSLQVILTKRDSY 353 (707)
Q Consensus 285 d~~~~~~l~~l~~~l~e~~~~~i~~~~------~~~~~~~~~ll~~~~~~~-----~~v~~~~l~FW~~l~~~l~~~~~~ 353 (707)
.+|....+++++++.+|++.+.+.++. +.+.++++.++.|++.|+ +.+|..++.||++|.+++....
T Consensus 314 ~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~-- 391 (982)
T KOG2022|consen 314 SEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTI-- 391 (982)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhh--
Confidence 467788999999999999998887532 346789999999999986 5789999999999999886431
Q ss_pred cccCcccchHHHHHHHHHhhH-HHHHHHHHHHHhhccCCCC--CCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhh
Q 005232 354 ISFGNEASAEAERSRRLQVFR-SAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVA 430 (707)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~ 430 (707)
++.. +.+...|+ |+|.+++++++.|+.+|.+ +..|+.|++|+|+.||++ ++
T Consensus 392 ----~e~~-----~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~d-----------------iS 445 (982)
T KOG2022|consen 392 ----NETQ-----QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKD-----------------IS 445 (982)
T ss_pred ----hccC-----CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHH-----------------HH
Confidence 1211 11234555 9999999999999999974 677999999999999999 99
Q ss_pred hHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCC---ChHH
Q 005232 431 DVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP---QQPQ 507 (707)
Q Consensus 431 d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~---~~~~ 507 (707)
|+++++|.++| +..+..+.+.+.+.+..+...+.+|.+.|+|+|++.++++.+...+++.++.+|+...+++ .+|.
T Consensus 446 D~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~q 524 (982)
T KOG2022|consen 446 DLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQ 524 (982)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChh
Confidence 99999999999 8899999999999876544346789999999999999999999999999999999987654 2899
Q ss_pred HHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhcc
Q 005232 508 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE 587 (707)
Q Consensus 508 l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~ 587 (707)
+..|+..+||.++.|+.+||. ++++.++.|++|+++++ ...+|...+.++|++|+.+|.||+++++..+.++++.+
T Consensus 525 l~~Tss~~igs~s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~ 600 (982)
T KOG2022|consen 525 LLSTSSDLIGSLSNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS 600 (982)
T ss_pred HHHHHHHHHHHHHHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc
Confidence 999999999999999999997 99999999999999888 78888889999999999999999999999999998864
Q ss_pred CCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC-
Q 005232 588 GSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH- 666 (707)
Q Consensus 588 ~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~- 666 (707)
...+.++.++|.+||+|++..-+|++.+|+.++++|+++.++.++....+.+. .....+..++.++.+|.++..
T Consensus 601 ---~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e--~~l~~~~~l~~iS~LftSL~~~ 675 (982)
T KOG2022|consen 601 ---NAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQE--NHLRIAFQLNTISALFTSLINK 675 (982)
T ss_pred ---ccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHHHHHHHhccCCC
Confidence 57789999999999999999999999999999999999999999886654322 344556678999999999752
Q ss_pred -----------------cccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhhhhC
Q 005232 667 -----------------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVS 707 (707)
Q Consensus 667 -----------------~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~~~ 707 (707)
.-|++.+.++++|+++++++.|.++.+++|..|.+++++++
T Consensus 676 ~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~ 733 (982)
T KOG2022|consen 676 KDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVR 733 (982)
T ss_pred CccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccc
Confidence 12789999999999999999999999999999999999875
No 2
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-71 Score=566.81 Aligned_cols=549 Identities=37% Similarity=0.604 Sum_probs=486.2
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHH
Q 005232 24 MQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRT 103 (707)
Q Consensus 24 ~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~ 103 (707)
..|++||++||+|+++|++|.++|+. ..+.+..+|||||+++||+++|+++|+.+..++|++++++++....++..+++
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~-~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ-KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHH
Confidence 47999999999999999999999987 57889999999999999999999999999999999999999998877779999
Q ss_pred HHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhccchhhcccccccCChHHHHHHHHHHHHhhHHHHH
Q 005232 104 QISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALS 183 (707)
Q Consensus 104 qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~~~~~~L~~L~~L~EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~ 183 (707)
||+.++|+++++++ +|.+ ++.++++.+++.+...+++|++|+++|||..+.+...+..||.++++.+....+.++.
T Consensus 81 QL~vavA~Lal~~~--~W~n--~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~ 156 (559)
T KOG2081|consen 81 QLAVAVAALALHMP--EWVN--PIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLV 156 (559)
T ss_pred HHHHHHHHHHHHhH--hhcc--hHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHH
Confidence 99999999999997 6998 8999999888776568899999999999999988878889999999999999999999
Q ss_pred HHHHhhhhh-----HHHHHHHHHHHHHHhccCCCCCcccccc-hhHHHHHhcCCCCccHHHHHHHHHHHHhhhccCCCCC
Q 005232 184 TLTACLHIN-----ELKEQVLEAFASWLRLKHRIPGSVLASH-PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGG 257 (707)
Q Consensus 184 ~l~~~l~~~-----~~~~~~l~~l~sWi~~~~~~~~~~~~~~-~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~ 257 (707)
++..+++.+ +...++++|+.||.+++ .+|.+.+.+. +++..+|..++++++++.|++|++.+++......
T Consensus 157 ~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~-~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~--- 232 (559)
T KOG2081|consen 157 FLSDLLERSDLKSSDDLEQVLRCLGSWLRLH-VFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRS--- 232 (559)
T ss_pred HHHHHHhhcCCChhhHHHHHHHHHhhhhhhc-cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhh---
Confidence 999999875 36699999999999987 4787776555 9999999999999999999999999998765322
Q ss_pred CCCcHhHHHHHHHh--HhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCcchHHHHHHHhhhcccCchhhhhh
Q 005232 258 ATVNMPLIQVIVPQ--IMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASM 335 (707)
Q Consensus 258 ~~~~~~~~~~l~~~--v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~~~~~~~~~ll~~~~~~~~~v~~~ 335 (707)
+..++-..++.. ++...-+...+.+|.|...++||+|+++||+|...+..+++.+...++.++.+++|++.++.++
T Consensus 233 --~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~ 310 (559)
T KOG2081|consen 233 --EGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEA 310 (559)
T ss_pred --ccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhh
Confidence 211222223323 2333333456678888899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhccccc
Q 005232 336 TFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACC 415 (707)
Q Consensus 336 ~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~ 415 (707)
+|.||+.+.+.++..++ ......|+|+|.++++.+.+|++||++.++ ..|+.++|.+||..
T Consensus 311 SF~fW~~lse~l~~~~~--------------~~~~~~frpy~~rLvs~l~~h~qlp~~~~~-l~Ee~~~f~~fR~~---- 371 (559)
T KOG2081|consen 311 SFNFWYSLSEELTLTDD--------------DEALGIFRPYFLRLVSLLKRHVQLPPDQFD-LPEEESEFFEFRLK---- 371 (559)
T ss_pred hHHhhhhhHHHHhcccc--------------HHHHHHhHHHHHHHHHHHHHHccCCCcccc-CccchhHHHHHHHH----
Confidence 99999999999887543 234679999999999999999999995433 34667899999999
Q ss_pred CCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHH
Q 005232 416 SSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQV 495 (707)
Q Consensus 416 ~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l 495 (707)
++|+++|+..++|.+.++..++..+.+ +.++|+..||+||.+.+++.++++++++.+|++
T Consensus 372 -------------v~dvl~Dv~~iigs~e~lk~~~~~l~e-------~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pev 431 (559)
T KOG2081|consen 372 -------------VGDVLKDVAFIIGSDECLKQMYIRLKE-------NNASWEEVEAALFILRAVAKNVSPEENTIMPEV 431 (559)
T ss_pred -------------HHHHHHHHHHHhCcHHHHHHHHHHHcc-------CCCchHHHHHHHHHHHHHhccCCccccchHHHH
Confidence 999999999999999999999998875 257899999999999999999999999999999
Q ss_pred HhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHH
Q 005232 496 MALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDG 575 (707)
Q Consensus 496 ~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~ 575 (707)
++.++++|....+|+|++.++|+|++|+..||+ ++..+++++..++.... ++.+|+.|+.++|..|+.++.+++++
T Consensus 432 l~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~---~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c~~~~~~l~~~ 507 (559)
T KOG2081|consen 432 LKLICNLPEQAPLRYTSILLLGEYSEWVEQHPE---LLEPVLRYIRQGLQLKR-LASAAALAFHRICSACRVQMTCLIPS 507 (559)
T ss_pred HHHHhCCccchhHHHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 999999997666999999999999999999997 99999999999998888 99999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHH
Q 005232 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPL 631 (707)
Q Consensus 576 l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L 631 (707)
++..+..+... ..+.+... +.+|++.+++.+|.++....++.+++|.+.++
T Consensus 508 ~~~l~~~l~~~----~~~~e~a~-l~~~~s~i~~~lp~~k~~~~~~el~~~~l~~l 558 (559)
T KOG2081|consen 508 LLELIRSLDST----QINEEAAC-LLQGISLIISNLPAHKAKIALEELCEPQLRNL 558 (559)
T ss_pred HHHHHHHHHHH----hccHHHHH-HHHHHHHHHhcCCHhhhhHHHHHHhhHHHhcc
Confidence 99888877654 35566667 99999999999999999999999999987543
No 3
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-47 Score=398.02 Aligned_cols=580 Identities=17% Similarity=0.225 Sum_probs=450.7
Q ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHH
Q 005232 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (707)
Q Consensus 4 ~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~ 82 (707)
+++|+||+.+...+ .|+..|+||-+|+++.+.||.||++|.+++....+++.+||||.|||.++++...++.+..+...
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 57899999999876 79999999999999999999999999999987557889999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--c----CCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC--chhHHHHHhccchhh
Q 005232 83 LQDSLNTLLKKF--H----KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLPEE 154 (707)
Q Consensus 83 lr~~Ll~~l~~~--~----~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~--~~~~~L~~L~~L~EE 154 (707)
+|.++..|+..- . ++|.+++||+++.++.++..++|..|++ ++.++...+.-++. ...+.+.+|-.+-.|
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~Wns--fF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNS--FFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 999999999863 2 3588999999999999999999999998 99998887765543 478999999999999
Q ss_pred cccccccCCh--HHH-HHHHHHHHH-hhHHHHHHHHHhhhh------hHHHHHHHHHHHHHHhccCCCCCcccccchhHH
Q 005232 155 VFNYKIAARP--ERR-RQFEKELTS-QMEVALSTLTACLHI------NELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (707)
Q Consensus 155 ~~~~~~~~~~--~~r-~~~~~~l~~-~~~~Vl~~l~~~l~~------~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~ 224 (707)
+.+.+..-++ .+| +.+++.+++ ++|.+...-.+++.. +++...+|+|+++|+.| +..+.+++.+.++
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSW---IdInLIaNd~f~n 236 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSW---IDINLIANDYFLN 236 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhh---hhhhhhhchhHHH
Confidence 9886543333 223 356788865 446665555444432 46888999999988887 5556678999999
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHH--hHhhhHHHhccCCCCHHHHHHHHHHHHHHhhH
Q 005232 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVP--QIMSLKAHLTDSSKDEEDVKAIARLFADMGDS 302 (707)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~--~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~ 302 (707)
++++.++.+++..+|++|+.+++++++.+ -++++++..+.. ++..+.. .++.+|.|....+.++++++|..
T Consensus 237 LLy~fl~ieelR~aac~cilaiVsKkMkP-----~dKL~lln~L~q~l~lfg~~s--~dq~~d~df~e~vskLitg~gve 309 (980)
T KOG2021|consen 237 LLYKFLNIEELRIAACNCILAIVSKKMKP-----MDKLALLNMLNQTLELFGYHS--ADQMDDLDFWESVSKLITGFGVE 309 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcCCCh-----hHHHHHHHHHHHHHHHHhhhc--cccccCchHHHHHHHHHhhccee
Confidence 99999999999999999999999998854 367888776522 1222111 23457778888999999999987
Q ss_pred HHHHHHc----CC--------cchHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHH
Q 005232 303 YVELIAT----GS--------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRL 370 (707)
Q Consensus 303 ~~~~i~~----~~--------~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 370 (707)
....+.+ .+ ......+.++++...+..++++...+.||+.+...+.+... . .
T Consensus 310 l~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~---l-------------s 373 (980)
T KOG2021|consen 310 LTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKA---L-------------S 373 (980)
T ss_pred eehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhccc---c-------------c
Confidence 7554432 11 12356788999999999999999999999998877764321 1 1
Q ss_pred HhhHHHHHHHHHHHHhhccCCCCC---CC-CChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHH
Q 005232 371 QVFRSAYESLVSLVSFRVQYPQDY---QD-LSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATL 446 (707)
Q Consensus 371 ~~~~~~~~~ll~~l~~k~~~p~d~---~~-~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l 446 (707)
+.-+..+.+++.+++.|+.|++.+ ++ -++||++.|.++|++ .. .+.+....+.|+.++
T Consensus 374 ~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~Rkk-----------------Lk-~fqdti~~idpsl~l 435 (980)
T KOG2021|consen 374 SPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKK-----------------LK-NFQDTIVVIDPSLFL 435 (980)
T ss_pred chhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHH-----------------HH-HHHHHHHhcCHHHHH
Confidence 112234467788888999998743 22 233666779999998 43 344444556667666
Q ss_pred HHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccc-----c-----ccHHHHHhhcC--CCC--ChHHHHHHH
Q 005232 447 KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-----A-----EVMPQVMALLP--KLP--QQPQLLQTV 512 (707)
Q Consensus 447 ~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-----~-----~~l~~l~~~l~--~l~--~~~~l~~t~ 512 (707)
..+.+.+......+ +.++|+.+|+++|.++.+||+.+... . ..+..++..+. +++ +|+.|..-.
T Consensus 436 ~~Ir~slS~al~ns--~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlf 513 (980)
T KOG2021|consen 436 NNIRQSLSAALMNS--KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLF 513 (980)
T ss_pred HHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHH
Confidence 66666665554333 25789999999999999999988642 1 22223333332 233 489999999
Q ss_pred HHHHHhhHHHHhhCCCCchhHHHHHHHHH--hccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhcc--
Q 005232 513 CLTIGAYSKWFDAASSDPSILASVLSILT--SGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE-- 587 (707)
Q Consensus 513 ~~~ig~~~~~l~~~p~~~~~l~~~l~~l~--~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~-- 587 (707)
++.|.||..|+..+|+ .+|-++++++ +|+++.. .|+.+|++.|.|+.+...+.+.|+++.+++.+++++...
T Consensus 514 mE~ivRY~kff~~esq---~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vt 590 (980)
T KOG2021|consen 514 MELIVRYNKFFSTESQ---KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVT 590 (980)
T ss_pred HHHHHHHHHHHhcchh---hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 9999999999999986 8999999987 5777764 599999999999999999999999999999999998421
Q ss_pred -----CCCCCChhhHHHHHHHHHHHHhc--CChHHHHHHHHHhhhhhHHHHHHH
Q 005232 588 -----GSLKVSAEDSLHLVEALSMVITE--LPQVDAKKALEMLCLPVVTPLQEI 634 (707)
Q Consensus 588 -----~~~~l~~~~~~~l~eai~~vi~~--~p~~~~~~~l~~l~~p~~~~L~~~ 634 (707)
.....+.+++.+++|++|.+|.. .|+|+...++..++.|+++...-.
T Consensus 591 t~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~ig 644 (980)
T KOG2021|consen 591 TINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIG 644 (980)
T ss_pred CcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHH
Confidence 11123567899999999999876 788999999999999988765443
No 4
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=8.1e-40 Score=334.92 Aligned_cols=613 Identities=17% Similarity=0.255 Sum_probs=433.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 005232 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (707)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (707)
++.+.+++..+|.+ |...++||++.|.+||..|+||+-+..||++ +..++.+|.|.+.|...|+++|+-+|++.+.++
T Consensus 13 iallDkVVttfyqg-~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~-S~~pqskyiALs~LdklIttkWkllp~~~r~Gi 90 (1053)
T COG5101 13 IALLDKVVTTFYQG-DGRKQEQAQRILTKFQELPDAWTKADYILNN-SKLPQSKYIALSLLDKLITTKWKLLPEGMRQGI 90 (1053)
T ss_pred HHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhCchHHHHHHHHHhc-ccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHH
Confidence 56678899999855 6667899999999999999999999999986 788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhccchhhccc
Q 005232 84 QDSLNTLLKKFHK------GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (707)
Q Consensus 84 r~~Ll~~l~~~~~------~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~~~~~~L~~L~~L~EE~~~ 157 (707)
|..+++.+..-++ ..+.+.+++-.+|..++.+.+|+.||+ +++++++.-+++-+.++.-+.+|+.|.||+..
T Consensus 91 Rnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~--FIpeli~~S~~s~~vCeNnmivLklLsEEvFd 168 (1053)
T COG5101 91 RNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPT--FIPELINVSQISMEVCENNMIVLKLLSEEVFD 168 (1053)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccch--hhHHHHhhccchHHHHhccHHHHHHhHHHHHh
Confidence 9999999887542 246899999999999999999999999 99999986655545678889999999999987
Q ss_pred cc-ccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcC-CC
Q 005232 158 YK-IAARPERRRQFEKELTSQMEVALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL-HS 232 (707)
Q Consensus 158 ~~-~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~---~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L-~~ 232 (707)
.+ ..++..+...+++.+...++.+++++.+++... ++.+++|..+..++.+ +|.+.+-...++.++...+ +.
T Consensus 169 fSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~w---iPl~yIfeTnIieLv~~~f~s~ 245 (1053)
T COG5101 169 FSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEW---IPLDYIFETNIIELVLEHFNSM 245 (1053)
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhccC
Confidence 53 223345566778889999999999999999763 4666655554443333 3334445567788777554 46
Q ss_pred CccHHHHHHHHHHHHhhhccCCCCC-CCCcHh-HHHHHHHhHh-h-------hHHHhccCCCCH-HHHHHHHHHHHHHhh
Q 005232 233 EILSEASVNVISELIHYSAAGSSGG-ATVNMP-LIQVIVPQIM-S-------LKAHLTDSSKDE-EDVKAIARLFADMGD 301 (707)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~-~~~~~~-~~~~l~~~v~-~-------l~~~l~~~~~d~-~~~~~l~~l~~~l~e 301 (707)
|++..++++||.++...++.+..++ .++... .++.+...++ . +...+...+..+ ++.+.++.+++++-+
T Consensus 246 pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~ 325 (1053)
T COG5101 246 PDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYE 325 (1053)
T ss_pred CchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHH
Confidence 8899999999999998665332111 111111 1222221111 1 111222233333 678899999999999
Q ss_pred HHHHHHHcCC--cchHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccC---ccccCc-------------ccchH
Q 005232 302 SYVELIATGS--DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDS---YISFGN-------------EASAE 363 (707)
Q Consensus 302 ~~~~~i~~~~--~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~---~~~~~~-------------~~~~~ 363 (707)
.+..++.... +....-...+++++...+.++...++++|..|.-.++..-+ ...+.+ -|+..
T Consensus 326 ~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~ 405 (1053)
T COG5101 326 VYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQD 405 (1053)
T ss_pred HHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchh
Confidence 9988875422 12344567888889999999999999999998877654210 000000 11111
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChH
Q 005232 364 AERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD 443 (707)
Q Consensus 364 ~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~ 443 (707)
+..+-+...|..++++|.-+++++|.-|++.--...|+.|--++|-.+. .-.+++. .+.+++.++..+.- +
T Consensus 406 ~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvket---DtI~lYk-----smRevLvyLthL~v-~ 476 (1053)
T COG5101 406 STKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKET---DTIELYK-----SMREVLVYLTHLIV-D 476 (1053)
T ss_pred cccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccc---cHhHHHH-----HHhhHHHHHhhhhh-h
Confidence 1222345678889999999999999999852111111112112221110 0000000 15677777776655 4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCcc-ccccHHHHHhhcCCC------C-ChHHHHHHHHHH
Q 005232 444 ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKL------P-QQPQLLQTVCLT 515 (707)
Q Consensus 444 ~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~l------~-~~~~l~~t~~~~ 515 (707)
..-.++..++...+. + ...+|..+...++++++|+..++++ +..++..++..|..+ . ....|....+++
T Consensus 477 Dte~~mi~Klarq~d--g-~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyv 553 (1053)
T COG5101 477 DTEKYMIGKLARQLD--G-KEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYV 553 (1053)
T ss_pred hHHHHHHHHHHHHhc--C-CccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeee
Confidence 455666666665442 2 2578999999999999999999987 456777777754322 2 256788999999
Q ss_pred HHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhc----CCHHHHHH-HHHHHhhccCC
Q 005232 516 IGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC----GYLDGLYN-VYRTAVNGEGS 589 (707)
Q Consensus 516 ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~----~~~~~l~~-~~~~~~~~~~~ 589 (707)
+|+|.+|+..|.. ++.+++..++..|++.+ +++.+||..|-++++.|+.+.. ...+++++ ++.++-...+
T Consensus 554 vGQYpRFLkahw~---FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~- 629 (1053)
T COG5101 554 VGQYPRFLKAHWS---FLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTG- 629 (1053)
T ss_pred eccchHHHHHHHH---HHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcc-
Confidence 9999999999986 99999999999997654 6999999999999999997765 12233333 2333322222
Q ss_pred CCCChhhHHHHHHHHHHHHhcCChH-HHHHHHHHhhhhhHHHHHHHHhcCCC
Q 005232 590 LKVSAEDSLHLVEALSMVITELPQV-DAKKALEMLCLPVVTPLQEIINQGPE 640 (707)
Q Consensus 590 ~~l~~~~~~~l~eai~~vi~~~p~~-~~~~~l~~l~~p~~~~L~~~~~~~~~ 640 (707)
.+.+....-.+||.|.+|+..|.. +....+..++.-....+.++..++..
T Consensus 630 -dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~ 680 (1053)
T COG5101 630 -DLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADE 680 (1053)
T ss_pred -cCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhh
Confidence 366788888999999999999976 34456667777667777776655443
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-37 Score=342.40 Aligned_cols=554 Identities=19% Similarity=0.263 Sum_probs=402.1
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHH
Q 005232 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (707)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~ 82 (707)
.++.+.+.++.| .+||+.+|++|++.|+..-+++..-.....++++ +.++++|.+||+.+|+.+.+.|+.++++.+.+
T Consensus 2 ~~~~l~qLl~~l-~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 2 DSAPLEQLLQQL-LSPDNEVRRQAEEALETLAKTEPLLPALAHILAT-SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred chhHHHHHHHHh-cCCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 457788999998 5789999999999999655555555555667765 78899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhHHHHHhccchhhccccccc
Q 005232 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIA 161 (707)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~-~~~~~~~L~~L~~L~EE~~~~~~~ 161 (707)
||++||..+.+ +..+.||+|+|.++|.++....+++||+ +++++++..+|. +...+..+.+|..+|+-+.+.
T Consensus 80 iks~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e~WPe--ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~--- 152 (1075)
T KOG2171|consen 80 IKSSLLEIIQS--ETEPSVRHKLADVIAEIARNDLPEKWPE--LLQFLFQSTKSPNPSLRESALLILSSLPETFGNT--- 152 (1075)
T ss_pred HHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccchHH--HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc---
Confidence 99999999988 4668899999999999999998889999 999999998774 456889999999999987653
Q ss_pred CChHHHHHHHHHHHHhhHHHHHHHHHhhhhhH--HHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCccHHHH
Q 005232 162 ARPERRRQFEKELTSQMEVALSTLTACLHINE--LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEAS 239 (707)
Q Consensus 162 ~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~~--~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a 239 (707)
+..+...+..++.++++.++ ++..+++.+.+.+.+. +.
T Consensus 153 ------------~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~---~~------------------------- 192 (1075)
T KOG2171|consen 153 ------------LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL---EN------------------------- 192 (1075)
T ss_pred ------------cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh---cc-------------------------
Confidence 23355667788888876542 5666666666555531 10
Q ss_pred HHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCcchHHHHH
Q 005232 240 VNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVH 319 (707)
Q Consensus 240 ~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~~~~~~~~ 319 (707)
.+ ...+.+..++|.++...+... .++|++.++...+.|.++++..++++.+ .+..+++
T Consensus 193 ---------~~---------~~~~~~~~llP~~l~vl~~~i-~~~d~~~a~~~l~~l~El~e~~pk~l~~---~l~~ii~ 250 (1075)
T KOG2171|consen 193 ---------NK---------SEVDKFRDLLPSLLNVLQEVI-QDGDDDAAKSALEALIELLESEPKLLRP---HLSQIIQ 250 (1075)
T ss_pred ---------ch---------HHHHHHHHHhHHHHHHhHhhh-hccchHHHHHHHHHHHHHHhhchHHHHH---HHHHHHH
Confidence 00 124556677787776555532 3445566778899999999999988864 5778899
Q ss_pred HHhhhcccC--chhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCC
Q 005232 320 ALLEVASHP--EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDL 397 (707)
Q Consensus 320 ~ll~~~~~~--~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~ 397 (707)
+.+++.++. ++.+...+++|...+.+.-. .......++..+++.+++.-|.=-.++++|
T Consensus 251 ~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap-------------------~~~k~~~~~~~~lv~~~l~~mte~~~D~ew 311 (1075)
T KOG2171|consen 251 FSLEIAKNKELENSIRHLALEFLVSLSEYAP-------------------AMCKKLALLGHTLVPVLLAMMTEEEDDDEW 311 (1075)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHhhH-------------------HHhhhchhhhccHHHHHHHhcCCcccchhh
Confidence 999998876 57899999999888887521 122344445556666665443322234566
Q ss_pred Ch-hhhHH--HH-HhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHH
Q 005232 398 SL-EDLKE--FK-HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAA 473 (707)
Q Consensus 398 ~~-d~~~~--f~-~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~ 473 (707)
.. |+.|+ +. -+|. ....+..+...+|++.++..+++.+...+. +.+|..+.|+
T Consensus 312 ~~~d~~ded~~~~~~~~------------------A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~-----S~~w~~R~Aa 368 (1075)
T KOG2171|consen 312 SNEDDLDEDDEETPYRA------------------AEQALDRLALHLGGKQVLPPLFEALEAMLQ-----STEWKERHAA 368 (1075)
T ss_pred ccccccccccccCcHHH------------------HHHHHHHHHhcCChhhehHHHHHHHHHHhc-----CCCHHHHHHH
Confidence 43 22221 11 1111 344666677889989999999999877653 5789999999
Q ss_pred HHHHHHhhccCCccccccHHHHHhhcCC-CC-ChHHHHHHHHHHHHhhHHHHhhCCCC--chhHHHHHHHHHhccCCChH
Q 005232 474 LFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSD--PSILASVLSILTSGMSTSED 549 (707)
Q Consensus 474 l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~-~~~~l~~t~~~~ig~~~~~l~~~p~~--~~~l~~~l~~l~~~l~~~~~ 549 (707)
|.++++++|++.......++++++++.. +. +||+||+++|..||+++.-|..+-+. .+.+++.+-.....-.+++
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~r- 447 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVR- 447 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchH-
Confidence 9999999999998766678999997654 53 69999999999999999877632110 0234444444433334455
Q ss_pred HHHHHHHHHHHHHHHhhh-hhcCCHHHHHH-HHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhh
Q 005232 550 TAAAAALAFRHICDDCRK-KLCGYLDGLYN-VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPV 627 (707)
Q Consensus 550 v~~~Aa~al~~l~~~c~~-~l~~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~ 627 (707)
|+.+||.|+-+|.++|.+ .+.||++.+|+ .+..+.++ -+...++.++.+||+|..+ +...+.++..-+
T Consensus 448 V~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~-----~~~~v~e~vvtaIasvA~A-----A~~~F~pY~d~~ 517 (1075)
T KOG2171|consen 448 VQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS-----SKPYVQEQAVTAIASVADA-----AQEKFIPYFDRL 517 (1075)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHHHHH-----HhhhhHhHHHHH
Confidence 999999999999999976 56799999999 55545443 2467899999999999988 456677777778
Q ss_pred HHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHH
Q 005232 628 VTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAI 684 (707)
Q Consensus 628 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i 684 (707)
|..|.+++++... ++........++.++.+-+.++ .+++.+..++++.++-.+
T Consensus 518 Mp~L~~~L~n~~~---~d~r~LrgktmEcisli~~AVG-ke~F~~~a~eliqll~~~ 570 (1075)
T KOG2171|consen 518 MPLLKNFLQNADD---KDLRELRGKTMECLSLIARAVG-KEKFLPLAEELIQLLLEL 570 (1075)
T ss_pred HHHHHHHHhCCCc---hhhHHHHhhHHHHHHHHHHHhh-hhhhhHhHHHHHHHHHhh
Confidence 8888999987652 2222223344666666655554 234444444444444443
No 6
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=298.52 Aligned_cols=586 Identities=17% Similarity=0.210 Sum_probs=387.4
Q ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCC-------
Q 005232 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE------- 73 (707)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~------- 73 (707)
|.-++++.+.++.-. +|||+.|+.||+.|++.+.+++.--....|+.++..+.++|..||.++||.|+++|.
T Consensus 1 ~~~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 1 DANLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred CccHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 456777878777764 678999999999999999887766666778877667889999999999999999995
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhccch
Q 005232 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLP 152 (707)
Q Consensus 74 ~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~ 152 (707)
.+.+++++.+|..++.++.+ .|..++.||+.+++.++.+++|+.||+ ++++|+.+++++. +....+|.+-..+
T Consensus 80 ~i~~~~~e~ikslIv~lMl~---s~~~iQ~qlseal~~Ig~~DFP~kWpt--Ll~dL~~~ls~~D~~~~~gVL~tahsi- 153 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLS---SPFNIQKQLSEALSLIGKRDFPDKWPT--LLPDLVARLSSGDFNVINGVLVTAHSI- 153 (960)
T ss_pred ccchhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHhccccchhhHH--HHHHHHhhccccchHHHHHHHHHHHHH-
Confidence 56677999999999999988 688999999999999999999999999 9999999998653 2334455554433
Q ss_pred hhcccccccCChHHHHHHH-HHHHHhhHHHHHHHHHhhhhhHHHHHHHH----------HHHHHHhccCCCCCcccccch
Q 005232 153 EEVFNYKIAARPERRRQFE-KELTSQMEVALSTLTACLHINELKEQVLE----------AFASWLRLKHRIPGSVLASHP 221 (707)
Q Consensus 153 EE~~~~~~~~~~~~r~~~~-~~l~~~~~~Vl~~l~~~l~~~~~~~~~l~----------~l~sWi~~~~~~~~~~~~~~~ 221 (707)
+ +..|.+.| ++|......|++-+...++. +..++.. .+..|.+- .-
T Consensus 154 --F--------kr~R~efrSdaL~~EIK~vLd~f~~Plt~--Lf~~t~~l~~~~~~~~~~l~~lf~v-----------ll 210 (960)
T KOG1992|consen 154 --F--------KRYRPEFRSDALWLEIKLVLDRFAEPLTD--LFRKTMELIQRHANDAAALNILFGV-----------LL 210 (960)
T ss_pred --H--------HhcCcccccHHHHHHHHHHHHhhHhHHHH--HHHHHHHHHhhcccchhHHHHHHHH-----------HH
Confidence 1 12233344 45655566666544444331 1111100 12222221 12
Q ss_pred hHHHHHhcCCCCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhh
Q 005232 222 LVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (707)
Q Consensus 222 ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e 301 (707)
|+..+|..|+.+ +.|+..+++++.+...|.+.+++......+ |++....+-++-.++||
T Consensus 211 l~~klfysLn~Q-------------------DiPEFFEdnm~~wM~~F~k~l~~~~p~le~--~~ee~~~l~~lka~ICE 269 (960)
T KOG1992|consen 211 LICKLFYSLNFQ-------------------DIPEFFEDNMKTWMGAFHKLLTYDNPLLES--DEEEATVLDKLKAQICE 269 (960)
T ss_pred HHHHHHHhhhcc-------------------cchHHHHhhHHHHHHHHHHHHhccCccccc--CcccccHHHHHHHHHHH
Confidence 333344444311 111222334444333343333322222222 22222233344444444
Q ss_pred HHHHHHHcCCcchH----HHH----HHHhhhcccCc-hhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHh
Q 005232 302 SYVELIATGSDESM----LIV----HALLEVASHPE-YDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQV 372 (707)
Q Consensus 302 ~~~~~i~~~~~~~~----~~~----~~ll~~~~~~~-~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (707)
.+.-+..+.++++. +++ +++...+.++. +-.+..++.|...+.+. ..
T Consensus 270 i~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r------------------------~~ 325 (960)
T KOG1992|consen 270 IFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRR------------------------PH 325 (960)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhh------------------------hh
Confidence 44333333333332 222 33334444554 45778889997665531 12
Q ss_pred hHHHH--HHHHHHHHhhccCCCCCCCCChhhhHHH-----HHhhhcccc-cCCCchhhhhhhhhhhhHHHHHHhhcChHH
Q 005232 373 FRSAY--ESLVSLVSFRVQYPQDYQDLSLEDLKEF-----KHTRYDLAC-CSSSTLTESVMLIAVADVLIDAASVLGGDA 444 (707)
Q Consensus 373 ~~~~~--~~ll~~l~~k~~~p~d~~~~~~d~~~~f-----~~~R~~~~~-~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~ 444 (707)
|..+| .+++..+++++..|+-. +..+|+|-| .+.|+|++| |.++ |||++.|+++.++.... .+
T Consensus 326 y~~~F~~~~vl~~i~e~VvlpN~~--lR~eDeElFED~pleYiRRDlEGsDvdT------RRR~a~dlvrgL~~~fe-~~ 396 (960)
T KOG1992|consen 326 YAELFEGENVLAQICEKVVLPNLI--LREEDEELFEDNPLEYIRRDLEGSDVDT------RRRAAIDLVRGLCKNFE-GQ 396 (960)
T ss_pred hHhhhcchHHHHHHHHhhcccccc--cchhhHHHhccCHHHHHHHhcccCCcch------hHHHHHHHHHHHHHHhc-ch
Confidence 23332 56788888999999731 122333334 468999998 6665 99999999999998885 44
Q ss_pred HHHHHHHHHHHHHhh-cCCCCCCcchhhHHHHHHHHhhccCCccc------ccc--HH-----HHHhhcCC--CCChHHH
Q 005232 445 TLKILYIKFVEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSVVE------AEV--MP-----QVMALLPK--LPQQPQL 508 (707)
Q Consensus 445 ~l~~l~~~l~~~~~~-~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~------~~~--l~-----~l~~~l~~--l~~~~~l 508 (707)
+...+...++..+.+ +.+|+.+|..++.++|.+.+++-...... ++. +. ++...|.+ .-.||.+
T Consensus 397 vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pil 476 (960)
T KOG1992|consen 397 VTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPIL 476 (960)
T ss_pred hHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccch
Confidence 555444444443321 34567899999999999999987754321 122 12 22223322 1248999
Q ss_pred HHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh---------hhcCCHHHHHH
Q 005232 509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK---------KLCGYLDGLYN 578 (707)
Q Consensus 509 ~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~---------~l~~~~~~l~~ 578 (707)
+..+++.+.-|...+.. +.+..+++.+..++..+. .|..+||+|+.++-.-|.+ .+.||+..+++
T Consensus 477 ka~aIKy~~~FR~ql~~-----~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~ 551 (960)
T KOG1992|consen 477 KADAIKYIYTFRNQLGK-----EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLT 551 (960)
T ss_pred hhcccceeeeecccCCh-----HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHH
Confidence 99999999888765553 378888888888887643 6999999999998765543 56688888888
Q ss_pred HHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHH
Q 005232 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFA 658 (707)
Q Consensus 579 ~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~ 658 (707)
.+...+..|+ ..+..++|++|+++++..+ ....++.++++.+|.+++.+..++|+++.+.| +.++.++
T Consensus 552 nLf~a~s~p~-----~~EneylmKaImRii~i~~-----~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnH--YLFEsi~ 619 (960)
T KOG1992|consen 552 NLFKALSLPG-----KAENEYLMKAIMRIISILQ-----SAIIPHAPELLRQLTEIVEEVSKNPSNPQFNH--YLFESIG 619 (960)
T ss_pred HHHHhccCCc-----ccccHHHHHHHHHHHHhCH-----HhhhhhhhHHHHHHHHHHHHHhcCCCCchhHH--HHHHHHH
Confidence 7777665442 3678999999999999964 45556777788888888887777777766666 6899999
Q ss_pred HHhhhcCC--cccHHHHHHHHhHHHHHHHHh
Q 005232 659 YIFRYVNH--PEAVADAIQRLWPIFKAIFDI 687 (707)
Q Consensus 659 ~~~~~~~~--~~p~~~~~~~~~p~l~~i~~~ 687 (707)
.++|..+. |..+..+...++|+++.+++.
T Consensus 620 ~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e 650 (960)
T KOG1992|consen 620 LLIRKTCKANPSAVSSLEEALFPVFQTILSE 650 (960)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 99999875 444677888999999999876
No 7
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-32 Score=296.25 Aligned_cols=615 Identities=14% Similarity=0.183 Sum_probs=424.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCC---------CC
Q 005232 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE---------LP 76 (707)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~---------l~ 76 (707)
.+.+.+.+.. .+||..|+.||+.|.+++|+|+....+++|+.++..+..||+.||+.|||+|.+.|.. ++
T Consensus 5 ~l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~ 83 (1010)
T KOG1991|consen 5 SLLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIP 83 (1010)
T ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCC
Confidence 3445554443 4569999999999999999999999999999887778889999999999999999963 57
Q ss_pred hhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhccchhhc
Q 005232 77 SEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEV 155 (707)
Q Consensus 77 ~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE~ 155 (707)
+++|..+|+.++..+.+ +|..+|.++..++-.|...++|++||+ +++.+-..++++. +....+|..|..|..-.
T Consensus 84 e~dk~~irenIl~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp~--l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 84 EEDKAVIRENILETIVQ---VPELIRVQLTACLNTIIKADYPEQWPG--LLDKIKNLLQSQDANHVYGALLCLYQLFKTY 158 (1010)
T ss_pred hHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHhcCCcccchh--HHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence 89999999999999998 799999999999999999999999998 9999888888764 34667788887775433
Q ss_pred ccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcC
Q 005232 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL 230 (707)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~-----~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L 230 (707)
.. . ..++|..+...+...+|.+++...+.+..+ ++.+.++|.+.+.+.+ ++|.. |
T Consensus 159 e~---k-~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~--~LP~~--------------L 218 (1010)
T KOG1991|consen 159 EW---K-KDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY--ELPLE--------------L 218 (1010)
T ss_pred hh---c-cccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH--hCCHH--------------h
Confidence 21 1 135667777788888999999999988764 4789999999999987 46642 5
Q ss_pred CCCccHHHHHHHHHHHHhhhcc--CCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHH--
Q 005232 231 HSEILSEASVNVISELIHYSAA--GSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVEL-- 306 (707)
Q Consensus 231 ~~~~~~~~a~~~l~~ii~~~~~--~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~-- 306 (707)
.+++.+..|++.+..++.++-. ..+.|++....+..+-..+ +.++.+.|+|..+|......
T Consensus 219 ~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KK---------------Wa~~~L~Rlf~Ryg~~~~~~~~ 283 (1010)
T KOG1991|consen 219 SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKK---------------WALHILNRLFERYGSPSLVVPE 283 (1010)
T ss_pred hCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHH---------------HHHHHHHHHHHHhCCccccchh
Confidence 6788999999999999986542 2222344433333221111 12333444444444322111
Q ss_pred ---HHcC--CcchHHHHHHHhhhcc------cCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHH
Q 005232 307 ---IATG--SDESMLIVHALLEVAS------HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS 375 (707)
Q Consensus 307 ---i~~~--~~~~~~~~~~ll~~~~------~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (707)
+... ..-+..+++.++.... +-.++|-..++.|. ...+.+ ..++...+|
T Consensus 284 y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl---~~~Vs~-----------------~~twkll~P 343 (1010)
T KOG1991|consen 284 YKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFL---EQCVSH-----------------ASTWKLLKP 343 (1010)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH---HHhccH-----------------HHHHHHhhh
Confidence 0000 0001222333333322 12356666677773 222221 347889999
Q ss_pred HHHHHHHHHHh-hccCCC-CCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChH---HHHHHHH
Q 005232 376 AYESLVSLVSF-RVQYPQ-DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD---ATLKILY 450 (707)
Q Consensus 376 ~~~~ll~~l~~-k~~~p~-d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~---~~l~~l~ 450 (707)
++.-++..++- -|.|-+ |.+.|+ +|.++|.+...|+.+|+.++ +.|..+++..++...|++ .++.+++
T Consensus 344 Hl~~ii~~vIFPlmc~~d~deelwe-~DP~EYiR~~~Di~ed~~sp------~~Aa~~~l~~~~~KR~ke~l~k~l~F~~ 416 (1010)
T KOG1991|consen 344 HLQVIIQDVIFPLMCFNDEDEELWE-EDPYEYIRKKFDIFEDGYSP------DTAALDFLTTLVSKRGKETLPKILSFIV 416 (1010)
T ss_pred HHHHHHHHhhhhhcCCCcccHHHHh-cCHHHHHHhcCchhcccCCC------cHHHHHHHHHHHHhcchhhhhhHHHHHH
Confidence 97776654432 222212 334454 34456655556777777775 445788888888888753 3555666
Q ss_pred HHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCcccc--ccHHHHH-hh-cCCCC-ChHHHHHHHHHHHHhhHHHHhh
Q 005232 451 IKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA--EVMPQVM-AL-LPKLP-QQPQLLQTVCLTIGAYSKWFDA 525 (707)
Q Consensus 451 ~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~--~~l~~l~-~~-l~~l~-~~~~l~~t~~~~ig~~~~~l~~ 525 (707)
+.++++-..+. +..+.|..|+||+.++++++.+..... ..+..++ ++ +|.+. +...+|..+|+++++|++-=-+
T Consensus 417 ~Il~~~~~~~~-~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~ 495 (1010)
T KOG1991|consen 417 DILTRYKEASP-PNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK 495 (1010)
T ss_pred HHHHhhcccCC-CccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC
Confidence 66655533322 257899999999999999977665421 2232222 22 34443 3579999999999999953334
Q ss_pred CCCCchhHHHHHHHHHhccC-CCh-HHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHHhhccCCCCCChhhHHHH
Q 005232 526 ASSDPSILASVLSILTSGMS-TSE-DTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 600 (707)
Q Consensus 526 ~p~~~~~l~~~l~~l~~~l~-~~~-~v~~~Aa~al~~l~~~c~~---~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l 600 (707)
+|. .+..++....++|. +++ .|+..||.|++.|...|.. .+.||++++|+.+..+.+. ...++-..+
T Consensus 496 d~~---~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne-----~End~Lt~v 567 (1010)
T KOG1991|consen 496 DPN---NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE-----VENDDLTNV 567 (1010)
T ss_pred ChH---HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh-----cchhHHHHH
Confidence 454 78899999888887 433 5899999999999999874 4889999999999998764 456777777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCC--CcccccCchhhhHHHHHHHHHhhhcCC-cccHHHHHHHH
Q 005232 601 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGP--EILQKKHPRDLTVHIDRFAYIFRYVNH-PEAVADAIQRL 677 (707)
Q Consensus 601 ~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~l~~~~~~~~~-~~p~~~~~~~~ 677 (707)
|+.+ +...+ ++..++...+++-+.+...++++... ...+++..-.....++.+++++-+++. |+-...+...+
T Consensus 568 me~i---V~~fs-eElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~ 643 (1010)
T KOG1991|consen 568 MEKI---VCKFS-EELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIV 643 (1010)
T ss_pred HHHH---HHHHH-HhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7776 45553 56778888889999998889888521 111222333445678999999998863 33345566678
Q ss_pred hHHHHHHHHhhcCchhHHHHHHHHHh
Q 005232 678 WPIFKAIFDIRAWDMRTMESLCRACK 703 (707)
Q Consensus 678 ~p~l~~i~~~~~~~~~v~e~~c~~~~ 703 (707)
.|++..++.+... ++.|.+|.++-
T Consensus 644 l~vi~~iL~~~i~--dfyeE~~ei~~ 667 (1010)
T KOG1991|consen 644 LPVIGFILKNDIT--DFYEELLEIVS 667 (1010)
T ss_pred HHHHHHHHHHhhH--HHHHHHHHHHh
Confidence 8999999988655 67788877654
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-34 Score=293.60 Aligned_cols=566 Identities=17% Similarity=0.259 Sum_probs=405.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHH
Q 005232 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQ 84 (707)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~-~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr 84 (707)
+|.+.++.- .+||++.|+.+...|.+|+..|+.-.+...+|.+ .+.+..+|-.|...|||.++.+|+.++++....+|
T Consensus 14 ql~~lLk~s-~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK 92 (885)
T KOG2023|consen 14 QLAQLLKNS-QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK 92 (885)
T ss_pred HHHHHHHhc-cCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH
Confidence 344444443 3789999999999999999999987766666653 24567799999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhccchhhcccccccCC
Q 005232 85 DSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKIAAR 163 (707)
Q Consensus 85 ~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE~~~~~~~~~ 163 (707)
+.++..+.. .++.||+-....++.|+...+-..||+ +++.|.+.+.+.. +.++..+.-|+.++|+....- .
T Consensus 93 s~~l~~lgd---~~~lIr~tvGivITTI~s~~~~~~wpe--lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~l-d-- 164 (885)
T KOG2023|consen 93 SECLHGLGD---ASPLIRATVGIVITTIASTGGLQHWPE--LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFL-D-- 164 (885)
T ss_pred HHHHhhccC---chHHHHhhhhheeeeeecccccccchh--HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHH-h--
Confidence 999988876 567888888888888888776678999 9999999887643 567788888888888743210 0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCccHHHHHHHH
Q 005232 164 PERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 243 (707)
Q Consensus 164 ~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l 243 (707)
+.-..+-|.--.|..++++... ++.++..++.|+...|-.- ...+...
T Consensus 165 ---s~~~~rpl~~mipkfl~f~~h~--spkiRs~A~~cvNq~i~~~---------~qal~~~------------------ 212 (885)
T KOG2023|consen 165 ---SDVLTRPLNIMIPKFLQFFKHP--SPKIRSHAVGCVNQFIIIQ---------TQALYVH------------------ 212 (885)
T ss_pred ---hhcccCchHHhHHHHHHHHhCC--ChhHHHHHHhhhhheeecC---------cHHHHHH------------------
Confidence 0000112344456666666554 4457777777776555320 0111100
Q ss_pred HHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCcchHHHHHHHhh
Q 005232 244 SELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLE 323 (707)
Q Consensus 244 ~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~~~~~~~~~ll~ 323 (707)
--++++.+|. + ..++|++..+++|+-|+-+.|..+..+.. +...++++||.
T Consensus 213 -----------------iD~Fle~lFa--------l-anD~~~eVRk~vC~alv~Llevr~dkl~p---hl~~IveyML~ 263 (885)
T KOG2023|consen 213 -----------------IDKFLEILFA--------L-ANDEDPEVRKNVCRALVFLLEVRPDKLVP---HLDNIVEYMLQ 263 (885)
T ss_pred -----------------HHHHHHHHHH--------H-ccCCCHHHHHHHHHHHHHHHHhcHHhccc---chHHHHHHHHH
Confidence 0122333332 2 25677888999999999999988887765 57789999999
Q ss_pred hcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCC-C---h
Q 005232 324 VASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDL-S---L 399 (707)
Q Consensus 324 ~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~-~---~ 399 (707)
.+..++++|+-.+.+||..+++.- -..+.+.|++.+++.+++..|.|-++...+ . +
T Consensus 264 ~tqd~dE~VALEACEFwla~aeqp--------------------i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ee 323 (885)
T KOG2023|consen 264 RTQDVDENVALEACEFWLALAEQP--------------------ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEE 323 (885)
T ss_pred HccCcchhHHHHHHHHHHHHhcCc--------------------CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccc
Confidence 999999999999999999998732 124588999999999999999996531000 0 0
Q ss_pred ----hhhHH-----HHHhhhccc----------------ccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHH
Q 005232 400 ----EDLKE-----FKHTRYDLA----------------CCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFV 454 (707)
Q Consensus 400 ----d~~~~-----f~~~R~~~~----------------~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~ 454 (707)
+|+|+ |..-|...- .|..+.|.+|.=..+..|++ ..++| +.++.+++..+.
T Consensus 324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVL---anvf~-~elL~~l~PlLk 399 (885)
T KOG2023|consen 324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVL---ANVFG-DELLPILLPLLK 399 (885)
T ss_pred cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHH---HHhhH-HHHHHHHHHHHH
Confidence 01111 111111000 12334444442222355555 45678 779999999998
Q ss_pred HHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-CC-ChHHHHHHHHHHHHhhHHHHhhCCCCchh
Q 005232 455 EGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSI 532 (707)
Q Consensus 455 ~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~ 532 (707)
+.+. ...|..+||+++++++|||++...-.+.+|.++.++.+ +. ..|.||.-+|++++||++|+.+.|. .++
T Consensus 400 ~~L~-----~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~-~~~ 473 (885)
T KOG2023|consen 400 EHLS-----SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR-DEY 473 (885)
T ss_pred HHcC-----cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh-Hhh
Confidence 8752 47899999999999999999988877888888887754 43 3689999999999999999998653 258
Q ss_pred HHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcC
Q 005232 533 LASVLSILTSG-MSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (707)
Q Consensus 533 l~~~l~~l~~~-l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (707)
+.+++.-+++. +...++|+.+||.||..+-++....|+||+..|++.+-..+.. ....+-.-++.|||.++.++
T Consensus 474 f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~k-----YQ~KNLlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 474 FKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGK-----YQKKNLLILYDAIGTLADSV 548 (885)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH-----HhhcceehHHHHHHHHHHHH
Confidence 88888766654 4555569999999999999999999999999999888777653 44556677899999999887
Q ss_pred ChH-HHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCc-cc-HHHHHHHHhHHHHHHH
Q 005232 612 PQV-DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHP-EA-VADAIQRLWPIFKAIF 685 (707)
Q Consensus 612 p~~-~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~p-~~~~~~~~~p~l~~i~ 685 (707)
... .-..|++-++.|++++++.+-.+. +++--.++-+|.+...++.. -| +.++.+..+.++++.+
T Consensus 549 g~~Ln~~~YiqiLmPPLi~KW~~lsd~D---------KdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~ 616 (885)
T KOG2023|consen 549 GHALNKPAYIQILMPPLIEKWELLSDSD---------KDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTL 616 (885)
T ss_pred HHhcCcHHHHHHhccHHHHHHHhcCccc---------chHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHH
Confidence 654 345789999999999998864432 24545567777766665421 12 2345666666666544
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.4e-26 Score=241.26 Aligned_cols=564 Identities=15% Similarity=0.207 Sum_probs=381.3
Q ss_pred CCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhh-----------cCCCCCChhhHHHH
Q 005232 17 HPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDVEELPSEAVRGL 83 (707)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~-----------~~w~~l~~~~~~~l 83 (707)
+||+..|++|+++|.+++.+ |......-++|.++.++..+|..|+.+|||-+. .+|.+++.|.|+.+
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqV 91 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQV 91 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 78999999999999999987 444555566676767788999999999999653 36999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hccccccCCccchHHHHHhcCCCCC--chhHHHHHhccchhhcccccc
Q 005232 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAV-HISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLPEEVFNYKI 160 (707)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~-~~~~~~W~~~~~i~~l~~~~~~~~~--~~~~~L~~L~~L~EE~~~~~~ 160 (707)
|..++..|.. ..+...+--++++|.+|. ..|.+.||+ ++..+.......+. .....|+.+..++|++..
T Consensus 92 K~~il~tL~~---~ep~~~s~Aaq~va~IA~~ElP~n~wp~--li~~lv~nv~~~~~~~~k~~slealGyice~i~p--- 163 (859)
T KOG1241|consen 92 KNNILRTLGS---PEPRRPSSAAQCVAAIACIELPQNQWPE--LIVTLVSNVGEEQASMVKESSLEALGYICEDIDP--- 163 (859)
T ss_pred HHHHHHHcCC---CCCCccchHHHHHHHHHHhhCchhhCHH--HHHHHHHhcccccchHHHHHHHHHHHHHHccCCH---
Confidence 9999999986 234455556778888885 456679999 99999988876543 347889999999998753
Q ss_pred cCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh----HHHHHHHHHHHHHHhccC-CCCCcccccchhHHHHHhcCCCC--
Q 005232 161 AARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKH-RIPGSVLASHPLVLTALSSLHSE-- 233 (707)
Q Consensus 161 ~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~----~~~~~~l~~l~sWi~~~~-~~~~~~~~~~~ll~~~~~~L~~~-- 233 (707)
+.+....+.|+.-+.+..... .++..+++|+-.-+.+.. ++.. ....+-+++.+++.-+.|
T Consensus 164 -----------evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~-E~ern~iMqvvcEatq~~d~ 231 (859)
T KOG1241|consen 164 -----------EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNN-EMERNYIMQVVCEATQSPDE 231 (859)
T ss_pred -----------HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhcc-HhhhceeeeeeeecccCCcH
Confidence 135556677776666665543 588999999988777754 2222 223455667777776655
Q ss_pred ccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCcc
Q 005232 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDE 313 (707)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~~ 313 (707)
++..+|..||+.|++-.. ++++.- +
T Consensus 232 ~i~~aa~~ClvkIm~LyY-----------~~m~~y--------------------------------------M------ 256 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMSLYY-----------EFMEPY--------------------------------------M------ 256 (859)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHH--------------------------------------H------
Confidence 355777777777775321 111110 0
Q ss_pred hHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhcc-CccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccC-C
Q 005232 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRD-SYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQY-P 391 (707)
Q Consensus 314 ~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~-p 391 (707)
...++..-+.-+..++++|+-.+++||.+++++-.+.. .|..+.+ ...+ +.....-+..+..+++++++.+.. .
T Consensus 257 ~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d-~~~~---p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 257 EQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVD-QGLP---PSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCC---chhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 01123333344557788999999999998887643310 0100000 0000 001112233455667777766655 2
Q ss_pred CC--CCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcch
Q 005232 392 QD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRP 469 (707)
Q Consensus 392 ~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~ 469 (707)
++ .|+|+.. .+.+-+|+-.+...| |.+++++...+.+.+. +.+|+.
T Consensus 333 e~~d~DdWnp~--------------------------kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~-----~pdwr~ 380 (859)
T KOG1241|consen 333 EDDDDDDWNPA--------------------------KAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQ-----NPDWRN 380 (859)
T ss_pred CCcccccCcHH--------------------------HHHHHHHHHHHHHhc-ccchhhhHHHHHHhcC-----Ccchhh
Confidence 22 2345432 126778888888888 6688888888887753 578999
Q ss_pred hhHHHHHHHHhhccCCccc-cccHHHHHhhcCCC--CChHHHHHHHHHHHHhhHHHHhh--CCCCchhHHHHHHHHHhcc
Q 005232 470 AEAALFCIRAISTYVSVVE-AEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDA--ASSDPSILASVLSILTSGM 544 (707)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l--~~~~~l~~t~~~~ig~~~~~l~~--~p~~~~~l~~~l~~l~~~l 544 (707)
+||+.++++++-++-.++. .+.+++.++.+..+ .+...++.|+-+.+||.++++.. .++ .++++.++.+..|+
T Consensus 381 reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~--~~l~~~l~~l~~gL 458 (859)
T KOG1241|consen 381 REAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQ--ELLQSKLSALLEGL 458 (859)
T ss_pred hhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccH--hhhhHHHHHHHHHh
Confidence 9999999999999866653 23333333333221 23567889999999999998874 232 58999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhh---------hcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHH
Q 005232 545 STSEDTAAAAALAFRHICDDCRKK---------LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD 615 (707)
Q Consensus 545 ~~~~~v~~~Aa~al~~l~~~c~~~---------l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~ 615 (707)
++.+.++..+|.||..|++.|.+. ..|+.+.+++.+.......+ .-...-|...++|++-+|..-|. .
T Consensus 459 ~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--gnqsNLR~AAYeALmElIk~st~-~ 535 (859)
T KOG1241|consen 459 NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--GNQSNLRSAAYEALMELIKNSTD-D 535 (859)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc--cchhhHHHHHHHHHHHHHHcCcH-H
Confidence 764439999999999999988643 22566666666655544321 12345689999999999999764 5
Q ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCc-ccccCchhhhH-HHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCchh
Q 005232 616 AKKALEMLCLPVVTPLQEIINQGPEI-LQKKHPRDLTV-HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMR 693 (707)
Q Consensus 616 ~~~~l~~l~~p~~~~L~~~~~~~~~~-~~~~~~~~~~~-~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~ 693 (707)
..+.+..+..-++.+|.++++...-+ .++....++.. ..+.|..++|-+. +.+.++-.+++..|-+++++ ..+.-
T Consensus 536 vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~--~~~~~~~d~iM~lflri~~s-~~s~~ 612 (859)
T KOG1241|consen 536 VYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG--SDIREVSDQIMGLFLRIFES-KRSAV 612 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc--ccchhHHHHHHHHHHHHHcC-Ccccc
Confidence 56778899999999999999832211 11112233322 2367777777664 35667888899999999988 34444
Q ss_pred HHHHHH
Q 005232 694 TMESLC 699 (707)
Q Consensus 694 v~e~~c 699 (707)
+-|.+.
T Consensus 613 v~e~a~ 618 (859)
T KOG1241|consen 613 VHEEAF 618 (859)
T ss_pred chHHHH
Confidence 444433
No 10
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-23 Score=238.08 Aligned_cols=604 Identities=15% Similarity=0.200 Sum_probs=395.2
Q ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 005232 5 NTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (707)
Q Consensus 5 ~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (707)
..+.+|+...+++ ++.+.|.+|+++|.+||..+++|..|..+|.. +...+++|||.+.|.+-|+++|+.+|.+++.++
T Consensus 10 ~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~-s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~gl 88 (1041)
T KOG2020|consen 10 SELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKL-STNPILKYFALQLLENVIKFRWNSLPVEERVGL 88 (1041)
T ss_pred HHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhc-cCCchhheeeHHHHHHHHHHhcccCCccccHHH
Confidence 4566666666666 89999999999999999999999999999986 677899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhccchhhccc
Q 005232 84 QDSLNTLLKKFHK------GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (707)
Q Consensus 84 r~~Ll~~l~~~~~------~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~~~~~~L~~L~~L~EE~~~ 157 (707)
|..+++.+...+. ..+.+++||+..+..++++.+|..||+ +++++.+....++..++..+.+++.|.||+..
T Consensus 89 k~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~--~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~ 166 (1041)
T KOG2020|consen 89 KNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPT--FIPDLAQSSKTSETVCELSMIILLLLSEEVFD 166 (1041)
T ss_pred HHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcch--hhhhHHHHhhcCcccchHHHHHHHHHHHHHhc
Confidence 9999998877432 246899999999999999999999999 99999998887777889999999999999987
Q ss_pred ccccCChHHHHHH-HHHHHHhhHHHHHHHHHhhhhh--HHH---HHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCC
Q 005232 158 YKIAARPERRRQF-EKELTSQMEVALSTLTACLHIN--ELK---EQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLH 231 (707)
Q Consensus 158 ~~~~~~~~~r~~~-~~~l~~~~~~Vl~~l~~~l~~~--~~~---~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~ 231 (707)
........+|..+ +..+...+..+.+++.....+. ++. ...+.++-+||.+++-++ .+.+-..+...++
T Consensus 167 ~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~I~~-----tn~l~~~l~~~ln 241 (1041)
T KOG2020|consen 167 FSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGYIFE-----TNILELLLNKFLN 241 (1041)
T ss_pred ccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHHHHH-----hhhHHHHHHhccc
Confidence 6533223344433 3444556666777776655432 233 345666677887654222 1224444556667
Q ss_pred CCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHh------HhhhHHHhccC-CCCH-HHHHHHHHHHHHHhhHH
Q 005232 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQ------IMSLKAHLTDS-SKDE-EDVKAIARLFADMGDSY 303 (707)
Q Consensus 232 ~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~------v~~l~~~l~~~-~~d~-~~~~~l~~l~~~l~e~~ 303 (707)
.++....|++||.++++...... .....++++..... .....+.+... ..|. ...+.++.+++.+++.+
T Consensus 242 ~~~~r~~al~CL~ei~s~~~~~~---~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~~ 318 (1041)
T KOG2020|consen 242 APELRNNALSCLTELLSRKRSIY---ERKTVPMFNLTIYQLRSIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQH 318 (1041)
T ss_pred hHHHHHHHHHHHHHHHhccccch---hHHhHHHHHHHHHHHHHhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998754210 00112233222211 11111222111 2233 57889999999999999
Q ss_pred HHHHHcCCcc---hHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhc-cCccccCcc-cch-H-HHHHHHHHhhHHH
Q 005232 304 VELIATGSDE---SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR-DSYISFGNE-ASA-E-AERSRRLQVFRSA 376 (707)
Q Consensus 304 ~~~i~~~~~~---~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~-~~~~~~~~~-~~~-~-~~~~~~~~~~~~~ 376 (707)
..++...... .......++..+..+..++...+++.|..+..+++.. +++...... +.. + ..-+-+.+.|..+
T Consensus 319 ~~lle~~~~~~~~~~~~~~~li~i~~~~~se~~~~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~rk~~y~~~ 398 (1041)
T KOG2020|consen 319 IALLESSLSQRPVLLEALLELILISTIEPSEIFKICLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFRKSIYQEF 398 (1041)
T ss_pred HHHHcCchhhhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhhhcccccccccccccccccchhccchHHHHHHHH
Confidence 9988763221 1222223333344444444455999999998876542 112111000 000 0 0001125678888
Q ss_pred HHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHH
Q 005232 377 YESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEG 456 (707)
Q Consensus 377 ~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~ 456 (707)
+.++-...+.+|.-|++.--.+.+..+.+++++.+ +|.. ++-..+.+++...+.+-+ ...-..+...+...
T Consensus 399 ~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~--~~~~------~ly~~~~e~l~~~~~L~~-~~t~~~~~~kl~~~ 469 (1041)
T KOG2020|consen 399 LSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKD--HDFI------TLYPVLRETLVYLLHLDV-VDTEKIMTEKLAIQ 469 (1041)
T ss_pred HHHHHHHHHHHhcCchheeEEechHHHHHHHhccC--cchh------hhhHHHHHHHHHHHHhhh-hhhhhhhhHhHHHH
Confidence 88888888899999986322233444555555553 1111 011124444444333333 22222233333332
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHhhccCCcc-ccccHHHHHh-h---cCC--CC-ChHHHHHHHHHHHHhhHHHHhhCCC
Q 005232 457 VACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMA-L---LPK--LP-QQPQLLQTVCLTIGAYSKWFDAASS 528 (707)
Q Consensus 457 ~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~-~---l~~--l~-~~~~l~~t~~~~ig~~~~~l~~~p~ 528 (707)
.. +...+|..+..-++++++++..+.++ +..++..++. . +.. -+ ....+....++++|.|..|+..|.
T Consensus 470 l~---~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h~- 545 (1041)
T KOG2020|consen 470 LD---GDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAHW- 545 (1041)
T ss_pred hh---HHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHHH-
Confidence 21 11467999999999999998876655 2333332222 1 111 12 235678889999999999999985
Q ss_pred CchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHhhccCCCCCChhhHHH
Q 005232 529 DPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAEDSLH 599 (707)
Q Consensus 529 ~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~--------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 599 (707)
.+++++...+++.++..+ .++.+||.+|-++...|..+.. |+...++.-+..+.. .+....+..
T Consensus 546 --~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~-----~l~~~q~~~ 618 (1041)
T KOG2020|consen 546 --KFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITE-----DLQPQQRHT 618 (1041)
T ss_pred --HHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhc-----CchHHHHHH
Confidence 488888899988887654 4899999999999999987522 555555555444433 255778889
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHhhhhhHHHHHHHHhcCC
Q 005232 600 LVEALSMVITE-LPQVDAKKALEMLCLPVVTPLQEIINQGP 639 (707)
Q Consensus 600 l~eai~~vi~~-~p~~~~~~~l~~l~~p~~~~L~~~~~~~~ 639 (707)
.++++|.++.+ .+++....+...+..---..+.+++..+.
T Consensus 619 ~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~ 659 (1041)
T KOG2020|consen 619 FYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQAR 659 (1041)
T ss_pred HHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCc
Confidence 99999955554 55556667777666666666666555443
No 11
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.3e-19 Score=190.70 Aligned_cols=605 Identities=13% Similarity=0.105 Sum_probs=360.5
Q ss_pred CCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCC-----CChhhHHHHHHHHHHHH
Q 005232 17 HPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE-----LPSEAVRGLQDSLNTLL 91 (707)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~-----l~~~~~~~lr~~Ll~~l 91 (707)
..|+..|+.|++.|.+++|.|+....|..++.++.-+.+||.-||.++||||.+.|.. .+++++.+.|..+++.+
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~lieni 93 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLIENI 93 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHHHHH
Confidence 5689999999999999999999999999999876678899999999999999999975 45567888888888777
Q ss_pred HHhc-CCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCCC-CchhHHHHHhccchhhcccccccCChHHHH
Q 005232 92 KKFH-KGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKIAARPERRR 168 (707)
Q Consensus 92 ~~~~-~~~~~v~~qL~~ala~l~~~~~~-~~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE~~~~~~~~~~~~r~ 168 (707)
..-. .+|...|+.+..++..+...++| +.|+ +.+...+.+.++. ..+..+|..+..+..- .++.. ..+|.
T Consensus 94 l~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg---l~p~~~nll~s~ea~~vy~gLlcl~elfka---yRwk~-ndeq~ 166 (970)
T COG5656 94 LDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG---LFPKAANLLRSSEANHVYTGLLCLEELFKA---YRWKY-NDEQV 166 (970)
T ss_pred HHHHhcCCchHHHHHHHHHHHhccccCchhhcc---cchHHHHhhcccchhHHHHHHHHHHHHHHH---Hhhhc-cchHh
Confidence 6633 46777888888888877776665 6776 6677777776653 3455666666555332 23332 23344
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCccHHHHHHHH
Q 005232 169 QFEKELTSQMEVALSTLTACLHI-----NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 243 (707)
Q Consensus 169 ~~~~~l~~~~~~Vl~~l~~~l~~-----~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l 243 (707)
.+..-+...+|.+.++-..+... .++...++|.+.+.+.+ ++|.. |+.++.+..++...
T Consensus 167 di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~--~LP~~--------------lsa~e~f~sw~ql~ 230 (970)
T COG5656 167 DILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY--SLPDF--------------LSAIETFSSWFQLS 230 (970)
T ss_pred hHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh--hCCHH--------------HccchhhHHHHHHH
Confidence 44444556667666665555442 25778899999888876 46642 45677888888888
Q ss_pred HHHHhhhccC--CCCCCCC--cHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHH-HcCCcchHHHH
Q 005232 244 SELIHYSAAG--SSGGATV--NMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELI-ATGSDESMLIV 318 (707)
Q Consensus 244 ~~ii~~~~~~--~~~~~~~--~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i-~~~~~~~~~~~ 318 (707)
..+++++... ..-|++. ..+|+++ ..+.+-++.|.|..+++.....= ..-...+...+
T Consensus 231 l~i~qkplp~evlsldpevRs~~~wvKc-----------------kKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~v 293 (970)
T COG5656 231 LRILQKPLPNEVLSLDPEVRSLSKWVKC-----------------KKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRV 293 (970)
T ss_pred HHHHcCCCCHHHhccChhhccccchhhh-----------------hHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 8888765421 0001111 0112210 01233345555555554332210 00000111223
Q ss_pred HHHhhh----cc-cC--chhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCC
Q 005232 319 HALLEV----AS-HP--EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYP 391 (707)
Q Consensus 319 ~~ll~~----~~-~~--~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p 391 (707)
+.+++. .. .+ ..=.+...+.|...|.+...+. .+++...+|+++-++...+--+-.+
T Consensus 294 p~il~tffkqie~wgqgqLWlsd~~LYfi~~Fve~cv~~----------------d~tw~l~ePhlq~ii~~vIfPllc~ 357 (970)
T COG5656 294 PMILATFFKQIEEWGQGQLWLSDIELYFIDFFVELCVDA----------------DQTWRLMEPHLQYIISGVIFPLLCL 357 (970)
T ss_pred HHHHHHHHHHHHHhhcCCeecchHHHHHHHHHHHHHhhh----------------HhhHhhhccHHHHHHHhhhhhhcCC
Confidence 333321 11 11 1113444555544455433221 2468888998766554433222222
Q ss_pred CC--CCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHH----HHHHHHHHHHHHHhhcCCCCC
Q 005232 392 QD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDA----TLKILYIKFVEGVACCGNKHN 465 (707)
Q Consensus 392 ~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~----~l~~l~~~l~~~~~~~~~~~~ 465 (707)
.+ .+.|+ +|.++|.+...|+.+++.++ ..+..+++.-+....+ +. ++.++.+.+.+..+.+.+ -.
T Consensus 358 see~eElfE-nDp~eyirry~df~d~g~sp------dlaal~fl~~~~sKrk-e~TfqgiLsf~~sil~qsaa~psn-~d 428 (970)
T COG5656 358 SEEEEELFE-NDPDEYIRRYYDFFDNGLSP------DLAALFFLIISKSKRK-EETFQGILSFLLSILGQSAATPSN-ID 428 (970)
T ss_pred ChhhHHHHh-cCHHHHHHHhcchhcCCCCh------hHHHHHHHHHHhcccc-hhhhhhHHHHHHHHHhcccCCCCc-cc
Confidence 22 22333 33455543333444433221 1124555555555555 44 445555555443322221 35
Q ss_pred CcchhhHHHHHHHHhhccCCccccccHHHHHhh------cCCCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHH
Q 005232 466 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMAL------LPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLS 538 (707)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~------l~~l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~ 538 (707)
+-+..|+|++.+++|..-++. .+ .+..+++. +|.+. ....++..+|+++++|+.-++.+. .+-.++.
T Consensus 429 narq~egalr~lasi~s~itk-~s-p~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~----ill~aye 502 (970)
T COG5656 429 NARQAEGALRLLASIKSFITK-MS-PAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNG----ILLEAYE 502 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhcc-Cc-hHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccch----HHHHHHH
Confidence 688999999999999984443 22 23333332 23443 357899999999999987666543 5666666
Q ss_pred HHHhccCCCh-HHHHHHHHHHHHHHHHhhh--hhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHH
Q 005232 539 ILTSGMSTSE-DTAAAAALAFRHICDDCRK--KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD 615 (707)
Q Consensus 539 ~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~--~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~ 615 (707)
...+++.+.. .|+..||.|+.-|..+-.. .+..|++..|+.+..+-+. ...+.-..+|+++ ++..+ ++
T Consensus 503 ~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~-----feiD~LS~vMe~f---Ve~fs-eE 573 (970)
T COG5656 503 NTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT-----FEIDPLSMVMESF---VEYFS-EE 573 (970)
T ss_pred HHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc-----ccchHHHHHHHHH---HHHhH-Hh
Confidence 6666665542 4899999999999876543 4668999999999887553 5566667777776 34433 34
Q ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCcc----c--ccCchhhhHHHHHHHHHhhhcCC-cccHHHHHHHHhHHHHHHHHhh
Q 005232 616 AKKALEMLCLPVVTPLQEIINQGPEIL----Q--KKHPRDLTVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIR 688 (707)
Q Consensus 616 ~~~~l~~l~~p~~~~L~~~~~~~~~~~----~--~~~~~~~~~~i~~l~~~~~~~~~-~~p~~~~~~~~~p~l~~i~~~~ 688 (707)
..++...+++.+.+..-++++..-.++ + ++...+....++.+..++-+++. |.-.-...+.+.|+++.++.+-
T Consensus 574 Lspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~ 653 (970)
T COG5656 574 LSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE 653 (970)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh
Confidence 555666666666654444444321111 1 11222334566777777777653 3333446678999999999873
Q ss_pred cCchhHHHHHHHHHh
Q 005232 689 AWDMRTMESLCRACK 703 (707)
Q Consensus 689 ~~~~~v~e~~c~~~~ 703 (707)
. .+....+|.++.
T Consensus 654 i--~dfy~Ea~dild 666 (970)
T COG5656 654 I--SDFYQEALDILD 666 (970)
T ss_pred H--HHHHHHHHHHHh
Confidence 3 355666666543
No 12
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.91 E-value=1.5e-19 Score=185.05 Aligned_cols=552 Identities=14% Similarity=0.138 Sum_probs=338.1
Q ss_pred CCCHHHHHHHHHHHHHHhcChhH--HHHHHHHhhcCCCChhHHHHHHHHHHhhhh-----------cCCCCCChhhHHHH
Q 005232 17 HPDDAVRMQADRWLQDFQHTIDA--WQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDVEELPSEAVRGL 83 (707)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~a--w~~~~~LL~~~~~~~~v~~faa~~L~~ki~-----------~~w~~l~~~~~~~l 83 (707)
+||+..|..|++.|.+.++.+-. -.+.-+.|-+.+++.+.|..|+.+|||-+. .+|-.++.|.|+.+
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qv 95 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQV 95 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHH
Confidence 68999999999999999976543 233445555557788999999999999763 45999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hccccccCCccchHHHHHhcCCCC--CchhHHHHHhccchhhcccccc
Q 005232 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAV-HISAEDWGGGGIVNWLRDEMNSHP--EFVPGFLELLTVLPEEVFNYKI 160 (707)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~-~~~~~~W~~~~~i~~l~~~~~~~~--~~~~~~L~~L~~L~EE~~~~~~ 160 (707)
|...++.|.. ..+-.-+.-+..+++|+- ..+...||+ ++..+....+..+ +...-.|.++...+|-...
T Consensus 96 K~~al~aL~s---~epr~~~~Aaql~aaIA~~Elp~~~wp~--lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--- 167 (858)
T COG5215 96 KGMALRALKS---PEPRFCTMAAQLLAAIARMELPNSLWPG--LMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--- 167 (858)
T ss_pred HHHHHHHhcC---CccHHHHHHHHHHHHHHHhhCccccchH--HHHHHHHhccccCchHhHHHHHHHHHHHhhccCH---
Confidence 9999999987 344455667778888875 445678998 9999998877543 2234556777776664321
Q ss_pred cCChHHHHHHHHHHHHhhHH-HHHHHHHhhhhh---HHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC--c
Q 005232 161 AARPERRRQFEKELTSQMEV-ALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--I 234 (707)
Q Consensus 161 ~~~~~~r~~~~~~l~~~~~~-Vl~~l~~~l~~~---~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~--~ 234 (707)
+.+.+..+. ++.+....+..+ .++..+|+|+-.-+.+..+.-...-..+.+++.+++.-+.+ +
T Consensus 168 -----------e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e 236 (858)
T COG5215 168 -----------EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEE 236 (858)
T ss_pred -----------HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHH
Confidence 123333333 344455444432 47888999987644332211111112333444444444422 2
Q ss_pred cHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCcch
Q 005232 235 LSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDES 314 (707)
Q Consensus 235 ~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~~~ 314 (707)
+.-+|.-||+.|+... ..+++..+.
T Consensus 237 ~q~aafgCl~kim~Ly-----------Y~fm~~ymE-------------------------------------------- 261 (858)
T COG5215 237 LQHAAFGCLNKIMMLY-----------YKFMQSYME-------------------------------------------- 261 (858)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHH--------------------------------------------
Confidence 3344444444444321 111111100
Q ss_pred HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhcc---CccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCC
Q 005232 315 MLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRD---SYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYP 391 (707)
Q Consensus 315 ~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p 391 (707)
..+..+..+.+..++++|...+++||..++++-.+.+ +|. ...|. .... =.....+.++..++..+.++=.-|
T Consensus 262 ~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~--pe~p~-qn~~-fa~aav~dvlP~lL~LL~~q~ed~ 337 (858)
T COG5215 262 NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYL--PEVPA-QNHG-FARAAVADVLPELLSLLEKQGEDY 337 (858)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhc--ccCch-hhcc-hHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1233444566778999999999999998877543211 111 11110 0000 011233445555565555432111
Q ss_pred CCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhh
Q 005232 392 QDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAE 471 (707)
Q Consensus 392 ~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~E 471 (707)
+.++|+..- +++-+|.--+.+.| +.++.-+...+.+.+. +.+|+.+|
T Consensus 338 -~~DdWn~sm--------------------------aA~sCLqlfaq~~g-d~i~~pVl~FvEqni~-----~~~w~nre 384 (858)
T COG5215 338 -YGDDWNPSM--------------------------AASSCLQLFAQLKG-DKIMRPVLGFVEQNIR-----SESWANRE 384 (858)
T ss_pred -cccccchhh--------------------------hHHHHHHHHHHHhh-hHhHHHHHHHHHHhcc-----CchhhhHH
Confidence 123455321 14556655455566 6666666666665542 57899999
Q ss_pred HHHHHHHHhhccCCccc-cccHHHHHhhcCCC--CChHHHHHHHHHHHHhhHHHHhh--CCCCchhHHHHHHHHHhccCC
Q 005232 472 AALFCIRAISTYVSVVE-AEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDA--ASSDPSILASVLSILTSGMST 546 (707)
Q Consensus 472 a~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l--~~~~~l~~t~~~~ig~~~~~l~~--~p~~~~~l~~~l~~l~~~l~~ 546 (707)
++.++++++-++-.++. ..++|+.+..+... .+...++.|+.+++|+.++++.. +|. ..++......+.|+.+
T Consensus 385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~--~Hl~~~vsa~liGl~D 462 (858)
T COG5215 385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC--GHLVLEVSASLIGLMD 462 (858)
T ss_pred HHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc--ccccHHHHHHHhhhhc
Confidence 99999999988865543 45567766665442 23457999999999999999986 566 3778888887777755
Q ss_pred -ChHHHHHHHHHHHHHHHHhhhh-------hcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 005232 547 -SEDTAAAAALAFRHICDDCRKK-------LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 618 (707)
Q Consensus 547 -~~~v~~~Aa~al~~l~~~c~~~-------l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~ 618 (707)
|. +...++.++.++++.-.+. +.++-+.|++.+....+.- .-....|..+++++|.+|.-.|+ ...+
T Consensus 463 ~p~-~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~---~Ne~n~R~s~fsaLgtli~~~~d-~V~~ 537 (858)
T COG5215 463 CPF-RSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA---LNESNLRVSLFSALGTLILICPD-AVSD 537 (858)
T ss_pred cch-HHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHhhcch-hHHH
Confidence 55 8889999999998865542 3344444444443332211 11345799999999999998764 3446
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCcccc---cCchhh-hHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhh
Q 005232 619 ALEMLCLPVVTPLQEIINQGPEILQK---KHPRDL-TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR 688 (707)
Q Consensus 619 ~l~~l~~p~~~~L~~~~~~~~~~~~~---~~~~~~-~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~ 688 (707)
.+..+.+-.+.+|.++++-..+...- ....++ ...+..+..++|.-. ..+-++..+++.+|-+++++-
T Consensus 538 ~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~--~~ie~v~D~lm~Lf~r~les~ 609 (858)
T COG5215 538 ILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR--RDIEDVEDQLMELFIRILEST 609 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCcccHHHHHHHHHHHHHhcc
Confidence 77788888888998888754321110 111221 235677777777642 223344555677777777664
No 13
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.74 E-value=1.5e-13 Score=148.97 Aligned_cols=592 Identities=17% Similarity=0.215 Sum_probs=322.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCC----------
Q 005232 5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE---------- 74 (707)
Q Consensus 5 ~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~---------- 74 (707)
+.+.+.|... -++|+..|.+|+..|.+...+++.-...-.+..+...+.+.|++|+..|++.|.++|..
T Consensus 4 ~~ii~~L~~~-ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 4 QAIIELLSGS-LSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHHHHHHHhh-cCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 3444555554 37799999999999999999988544444555554567889999999999999999963
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhccchh
Q 005232 75 LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPE 153 (707)
Q Consensus 75 l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~E 153 (707)
.+++.|..+|+.|++.+.. .++.+++-.+-+++.|+-.++|+.||+ +++.+...++++. +.....+++|..+-.
T Consensus 83 ~~e~~K~~IRe~Ll~~l~~---sn~ki~~~vay~is~Ia~~D~Pd~WpE--lv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLDD---SNSKIRSAVAYAISSIAAVDYPDEWPE--LVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred ccHHHHHHHHHHHHhhhhc---cccccchHHHHHHHHHHhccCchhhHH--HHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 3456788999999998874 567799999999999999999999999 9999999888543 456677788877766
Q ss_pred hcccccccC-ChHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCC
Q 005232 154 EVFNYKIAA-RPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS 232 (707)
Q Consensus 154 E~~~~~~~~-~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~ 232 (707)
|+....... ++ .....+..++.+...+-. ..+ .+. ...+++..++..+
T Consensus 158 ev~~ee~~~~~~--------~~l~~m~~~f~~~~~~s~--~~~---~~a----------------a~~~lf~sc~~li-- 206 (1005)
T KOG2274|consen 158 EVDVEEMFFVGP--------VSLAEMYRIFALTIVYSI--ITR---LGA----------------ARGKLFTSCLTLI-- 206 (1005)
T ss_pred HHHHHHHhcccc--------cchhhhhhhhhhccccch--hHH---HHh----------------hhhHHHHHHHHHH--
Confidence 653211000 00 000011111111110000 000 000 0011111111111
Q ss_pred CccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHH-hccCCC-CHHHHHHHHHHHHHHhhHHHHHHHcC
Q 005232 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH-LTDSSK-DEEDVKAIARLFADMGDSYVELIATG 310 (707)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~-l~~~~~-d~~~~~~l~~l~~~l~e~~~~~i~~~ 310 (707)
+....... +....++..+++..+....+ +..... |.-....+.+.++.++++++.++..-
T Consensus 207 ------------~~~~e~~~------~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~ 268 (1005)
T KOG2274|consen 207 ------------TNVEEVWA------EHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPF 268 (1005)
T ss_pred ------------hHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 11100000 00111223333332222211 111111 22233456677777877777666421
Q ss_pred C----cchHHHHHHHhhh-----ccc------------Cc----hhhhhhhHHHHHHHHHHHhhccCccccCcccchHHH
Q 005232 311 S----DESMLIVHALLEV-----ASH------------PE----YDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAE 365 (707)
Q Consensus 311 ~----~~~~~~~~~ll~~-----~~~------------~~----~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~ 365 (707)
. +-....++.++.. ..+ |. .+..-..++|-..+.....-.
T Consensus 269 ~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~--------------- 333 (1005)
T KOG2274|consen 269 MMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLS--------------- 333 (1005)
T ss_pred HHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHH---------------
Confidence 0 0011111111110 000 00 123445567766555432110
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhccCCCC-CCCCChhhhHHH-------HHhhhcccccCCCchhhhhhhhhhhhHHHHHH
Q 005232 366 RSRRLQVFRSAYESLVSLVSFRVQYPQD-YQDLSLEDLKEF-------KHTRYDLACCSSSTLTESVMLIAVADVLIDAA 437 (707)
Q Consensus 366 ~~~~~~~~~~~~~~ll~~l~~k~~~p~d-~~~~~~d~~~~f-------~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~ 437 (707)
...+..+..++-.++.-++.+++ .+.|..| ..+| ..-|.. ..|.+..+.
T Consensus 334 -----~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD-~~~fV~dEd~~~~~~~~-----------------~rd~~~~v~ 390 (1005)
T KOG2274|consen 334 -----KTIKKNLPELIYQLVAYLQLSEEQIEVWTSD-VNQFVADEDDGYTARIS-----------------VRDLLLEVI 390 (1005)
T ss_pred -----HHhhhhhHHHHHHHHHHHHhhHHHHHHHhcc-HHHhhccCCCCchhhhh-----------------HHHHHHHHH
Confidence 00000111222222223333321 1122211 1111 122333 666666666
Q ss_pred hhcChHHHHHHHHHH----HHHHHh-hcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcC-CC--CChHHHH
Q 005232 438 SVLGGDATLKILYIK----FVEGVA-CCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL--PQQPQLL 509 (707)
Q Consensus 438 ~~l~~~~~l~~l~~~----l~~~~~-~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l--~~~~~l~ 509 (707)
.-+|.. -+.-+.+. +++.-+ ...+....|..-|+++++..++...-. ....+..+..++- .+ ..-|.+.
T Consensus 391 ~~f~~~-~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~--~dd~l~~l~~~~~~~l~~~e~P~Ll 467 (1005)
T KOG2274|consen 391 TTFGNE-GINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDA--NDDKLIELTIMIDNGLVYQESPFLL 467 (1005)
T ss_pred Hhccch-hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcc--hHHHHHHHHHHHHhhcccccCHHHH
Confidence 777743 22223333 322211 112225679999999999888873211 2233333333322 22 2347777
Q ss_pred HHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHhhh-hhcCCHHHHHHHHHHHhhc
Q 005232 510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCRK-KLCGYLDGLYNVYRTAVNG 586 (707)
Q Consensus 510 ~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~--~~~v~~~Aa~al~~l~~~c~~-~l~~~~~~l~~~~~~~~~~ 586 (707)
..++.+++.|++-+.-+|+ ++..+++..+.+++- |+.++..|+ +.+|.-|+. .+.|..+.++..+.++...
T Consensus 468 ~Ra~~~i~~fs~~~~~~~~---~~~~fl~~~v~~l~~~~~~~~ki~a~---~~~~~~~~~~vl~~~~p~ild~L~qlas~ 541 (1005)
T KOG2274|consen 468 LRAFLTISKFSSSTVINPQ---LLQHFLNATVNALTMDVPPPVKISAV---RAFCGYCKVKVLLSLQPMILDGLLQLASK 541 (1005)
T ss_pred HHHHHHHHHHHhhhccchh---HHHHHHHHHHHhhccCCCCchhHHHH---HHHHhccCceeccccchHHHHHHHHHccc
Confidence 7999999998887666675 788888877776643 332444444 555555554 5669999999999888653
Q ss_pred cCCCCCChhhHHHHHHHHHHHHhcCChHH------HH-------------HHHHHhhhhhHHHHHHHHhcCCC-------
Q 005232 587 EGSLKVSAEDSLHLVEALSMVITELPQVD------AK-------------KALEMLCLPVVTPLQEIINQGPE------- 640 (707)
Q Consensus 587 ~~~~~l~~~~~~~l~eai~~vi~~~p~~~------~~-------------~~l~~l~~p~~~~L~~~~~~~~~------- 640 (707)
.+.+....+||+++.|++-=|... +- ++...+...+++.|-+......+
T Consensus 542 -----~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iP 616 (1005)
T KOG2274|consen 542 -----SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIP 616 (1005)
T ss_pred -----ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 567888999999999988754211 00 12223333333333332221111
Q ss_pred --------cccccCchhhhHHHHHHHHHhhhcCCcccH-HHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhhhh
Q 005232 641 --------ILQKKHPRDLTVHIDRFAYIFRYVNHPEAV-ADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAV 706 (707)
Q Consensus 641 --------~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~-~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~~ 706 (707)
+..+.........++.|++++|.- |.|. -.++..++|.+-++. -+..|.+.++..-.|+|.-|
T Consensus 617 slisil~~~~~~~~~~l~~~aidvLttvvr~t--p~pL~~~l~~~~FpaVak~t-lHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 617 SLISVLQLNADKAPAGLCAIAIDVLTTVLRNT--PSPLPNLLICYAFPAVAKIT-LHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHcCcccccCchhhHHHHHHHHHHHhcC--CCCccHHHHHHHhHHhHhhe-eecCChHHHHhHHHHHHHHH
Confidence 001111333456889999999975 4443 446778999999987 78889999999999999765
No 14
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.72 E-value=1.7e-17 Score=153.09 Aligned_cols=141 Identities=26% Similarity=0.434 Sum_probs=125.5
Q ss_pred ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhccchhhccc-ccccCChHHHHHHHHHHHH
Q 005232 98 PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN-YKIAARPERRRQFEKELTS 176 (707)
Q Consensus 98 ~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~~~~~~L~~L~~L~EE~~~-~~~~~~~~~r~~~~~~l~~ 176 (707)
|++|++|+|.+++.++.+++|+.||+ +++++++.+++++.....+|.+|+.++||+.+ .+..+...||.++++.+..
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~--~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPD--FLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCch--HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999 99999999888766788999999999999986 3455567889999999999
Q ss_pred hhHHHHHHHHHhhhh------hHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCccHHHHHHHH
Q 005232 177 QMEVALSTLTACLHI------NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 243 (707)
Q Consensus 177 ~~~~Vl~~l~~~l~~------~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l 243 (707)
+.+.|++++.++++. +++...+++|+.+|+.+ ++.+.+.+.++++.+|+.|++++++++|++||
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~---~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW---IPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT---S-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh---CCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 999999999999876 46789999999999996 66666677889999999999999999999997
No 15
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=7.1e-12 Score=131.45 Aligned_cols=338 Identities=17% Similarity=0.190 Sum_probs=230.2
Q ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhH
Q 005232 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAV 80 (707)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~ 80 (707)
|++.++++.....+|.+.|+..|.+||+-|.+|..+|++.+-|..|+.+ ++.+..+..|+..|-+.+.+. ..+|.+++
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~-gs~pYs~mlAst~L~Klvs~~-t~lpl~qr 78 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLER-GSYPYSQMLASTCLMKLVSRK-TPLPLEQR 78 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHcCC-CCCcHHHH
Confidence 7889999999999999999999999999999999999999999999987 566688999999998777654 47999999
Q ss_pred HHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccccccCCc--------cchHHHHHhcCCC-CCchhHHHHHhcc
Q 005232 81 RGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWGGG--------GIVNWLRDEMNSH-PEFVPGFLELLTV 150 (707)
Q Consensus 81 ~~lr~~Ll~~l~~~~-~~~~~v~~qL~~ala~l~~~~~~~~W~~~--------~~i~~l~~~~~~~-~~~~~~~L~~L~~ 150 (707)
..+|+.+++++..-+ +-+++|...|++.+|.+.+.. |-+. +++.++...++.+ .+.+.+++.+|..
T Consensus 79 ldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~g----W~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 79 LDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLG----WFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhcc----ccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHH
Confidence 999999999998832 235789999999999987753 5432 4667777767654 3678899999999
Q ss_pred chhhccccccc--CChHHHH--HHHH-HHHHhhHHHHHHHHHhhh----h-------hHHHHHHHHHHHH-HHhccC---
Q 005232 151 LPEEVFNYKIA--ARPERRR--QFEK-ELTSQMEVALSTLTACLH----I-------NELKEQVLEAFAS-WLRLKH--- 210 (707)
Q Consensus 151 L~EE~~~~~~~--~~~~~r~--~~~~-~l~~~~~~Vl~~l~~~l~----~-------~~~~~~~l~~l~s-Wi~~~~--- 210 (707)
|..|....+.. .++.||. .+|+ .|.+-+..-+..+..... . ..+.+.+++|+.- +|+-..
T Consensus 155 LvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs 234 (1082)
T KOG1410|consen 155 LVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDES 234 (1082)
T ss_pred HHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccc
Confidence 99998765433 3334443 2343 233333333344443321 1 1356778888762 333221
Q ss_pred -------CCCCc---ccccchhHHHHHhcCCC--CccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHH
Q 005232 211 -------RIPGS---VLASHPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH 278 (707)
Q Consensus 211 -------~~~~~---~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~ 278 (707)
.||.+ .+..+..+++.|+..+. |++++.|..|++.+.+..++..+ + .+..++++.++.++-.+.+.
T Consensus 235 sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN-~-aeRa~yl~~Lv~Gvk~il~n 312 (1082)
T KOG1410|consen 235 SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFN-G-AERAKYLQHLVEGVKRILEN 312 (1082)
T ss_pred cccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhC-C-HHHHHHHHHHHHHHHHHHhC
Confidence 12211 12245678888888874 67899999999999987665431 1 24467888888776554332
Q ss_pred hccCCCCHHHHHHHHHHHHHHhhHHHH-HHH--cCCcchHHHH-HHHhhhcccCc--hhhhhhhHHHHHHHHHHH
Q 005232 279 LTDSSKDEEDVKAIARLFADMGDSYVE-LIA--TGSDESMLIV-HALLEVASHPE--YDIASMTFNFWHSLQVIL 347 (707)
Q Consensus 279 l~~~~~d~~~~~~l~~l~~~l~e~~~~-~i~--~~~~~~~~~~-~~ll~~~~~~~--~~v~~~~l~FW~~l~~~l 347 (707)
..+-.|.+.++.+||++..+-.+|-- -++ ++.++..+++ ++-+.-..|=. ..-....+.+|.++...+
T Consensus 313 -p~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSV 386 (1082)
T KOG1410|consen 313 -PQGLSDPANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASV 386 (1082)
T ss_pred -CcCCCCcchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcC
Confidence 23445667788999999988776622 122 2333333332 33222222211 234578899999887654
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=5.8e-13 Score=142.35 Aligned_cols=584 Identities=11% Similarity=0.122 Sum_probs=294.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCC-----CCChhhHH
Q 005232 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE-----ELPSEAVR 81 (707)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~-----~l~~~~~~ 81 (707)
|.+.++.. .++|+..++-||+.|++.++.|+.......|..+.+.+..||..|+..+||-|.+.|. .+|+|+|.
T Consensus 2 vvq~Lq~A-ts~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~ 80 (978)
T KOG1993|consen 2 VVQVLQQA-TSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKD 80 (978)
T ss_pred HHHHHHHh-cCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHH
Confidence 45667776 5889999999999999999999999888888876566788999999999999999994 79999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC---CC--chhHHHHHhccchhhcc
Q 005232 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH---PE--FVPGFLELLTVLPEEVF 156 (707)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~---~~--~~~~~L~~L~~L~EE~~ 156 (707)
.+|..++.+... ..+.+..|.+.++|.+|.-++|.+||+ +++++.+.+++. .+ ...-.|.+|..+-.+..
T Consensus 81 ~iR~~Ll~~~~E---~~nQlaiQ~AvlisrIARlDyPreWP~--Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~La 155 (978)
T KOG1993|consen 81 FIRCNLLLHSDE---ENNQLAIQNAVLISRIARLDYPREWPD--LFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALA 155 (978)
T ss_pred HHHHHHHHhccc---chhHHHHHHHHHHHHHHhcCCCccchh--HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 999999887764 567899999999999999999999999 999998887753 12 11223333333333333
Q ss_pred cccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCccH
Q 005232 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILS 236 (707)
Q Consensus 157 ~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~ 236 (707)
+.++ .+=+..+.+-.+.|+.++.-.+-++ +.-.--|.. ++. ....+++ .+ +.+
T Consensus 156 t~RL-------~a~rk~F~el~~~I~~~l~~~l~s~------lt~~~lq~~-----ss~--~ea~~Ls----al---Q~s 208 (978)
T KOG1993|consen 156 TKRL-------LADRKAFYELAPEILTILAPILWSS------LTMMFLQSV-----SSI--KEATLLS----AL---QRS 208 (978)
T ss_pred HhHH-------hhhhHHHHHHhHHHHHHHHHHHhcc------hHHHHHHHh-----hcc--hhHHHHH----HH---HHH
Confidence 3222 2223456666777777655443221 000000000 000 0000000 00 011
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHH-h---ccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCc
Q 005232 237 EASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH-L---TDSSKDEEDVKAIARLFADMGDSYVELIATGSD 312 (707)
Q Consensus 237 ~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~-l---~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~ 312 (707)
-.+..++-.++-.+-. . +. +.++++.+ ++.+.+... + .....+.-...-+-+...+++..+..++.+++-
T Consensus 209 ~~~lk~lRrlvv~G~~-~---P~-kse~~eRl-~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpf 282 (978)
T KOG1993|consen 209 YLTLKVLRRLVVFGFQ-N---PS-KSEFFERL-LQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPF 282 (978)
T ss_pred HHHHHHHHHHHHhccC-C---cc-hhhHHHHH-HHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1222333333321110 0 00 01121111 111111111 0 000011101111222333333334334433331
Q ss_pred ch------HHHHHHHhhhcccCchh--hhhhhHHHHHHHHH-------HHhhccCcc------ccCcccchHHHH-HHHH
Q 005232 313 ES------MLIVHALLEVASHPEYD--IASMTFNFWHSLQV-------ILTKRDSYI------SFGNEASAEAER-SRRL 370 (707)
Q Consensus 313 ~~------~~~~~~ll~~~~~~~~~--v~~~~l~FW~~l~~-------~l~~~~~~~------~~~~~~~~~~~~-~~~~ 370 (707)
.+ ...+++-+....++.+. -++-...+|..+.. .+.....|. .+.+......++ +...
T Consensus 283 sF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~ 362 (978)
T KOG1993|consen 283 SFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIY 362 (978)
T ss_pred ccccccccceeeehhhhhhhcccchhcccccccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHH
Confidence 11 11222222222222110 01122223332211 111111111 011100000000 0111
Q ss_pred Hhh--HHHHHHHHHHHHhhcc--CCCCCCCCChhhhHHHH------HhhhcccccCCCchhhhhhhhhhhh-HHHHHHhh
Q 005232 371 QVF--RSAYESLVSLVSFRVQ--YPQDYQDLSLEDLKEFK------HTRYDLACCSSSTLTESVMLIAVAD-VLIDAASV 439 (707)
Q Consensus 371 ~~~--~~~~~~ll~~l~~k~~--~p~d~~~~~~d~~~~f~------~~R~~~~~~~~~~~~~~~~~~~~~d-~l~~~~~~ 439 (707)
..| .+.+..+++.++.|-- -|+|.++|..| .|.|. ++-..+|. .++ ++++++.-
T Consensus 363 ~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~d-PE~~~~Eq~~~dwey~lRP--------------CaE~L~~~lF~~ 427 (978)
T KOG1993|consen 363 NSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQD-PEGWVLEQSGGDWEYNLRP--------------CAEKLYKDLFDA 427 (978)
T ss_pred HHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcC-hHHhhhhcccccceeccch--------------hHHHHHHHHHHH
Confidence 111 2244566666666542 25566667533 23331 22222222 333 44555555
Q ss_pred cChHHHHHHHHHHHHHHHhhc-CCCCC---CcchhhHHHHHHHHhhccCCccccccHHHHHh--hcCCC----CChHHHH
Q 005232 440 LGGDATLKILYIKFVEGVACC-GNKHN---EWRPAEAALFCIRAISTYVSVVEAEVMPQVMA--LLPKL----PQQPQLL 509 (707)
Q Consensus 440 l~~~~~l~~l~~~l~~~~~~~-~~~~~---~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~--~l~~l----~~~~~l~ 509 (707)
.+ +-+.+.+..++.+..... +.+.+ ..-..+|..-+++-.+-.+...-+ ....++ .++.+ +....+|
T Consensus 428 ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~d--F~~Wl~~~llpEl~~~~~~~RiiR 504 (978)
T KOG1993|consen 428 YS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILD--FDKWLQEALLPELANDHGNSRIIR 504 (978)
T ss_pred HH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHhhCHHhhhcccchhHHH
Confidence 44 445555555554443211 11111 122345655555544433332110 111121 12332 2245799
Q ss_pred HHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh--HHHHHHHHHHHHHHHHh---hhhhcCCHHHHHHHHHHHh
Q 005232 510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDC---RKKLCGYLDGLYNVYRTAV 584 (707)
Q Consensus 510 ~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~--~v~~~Aa~al~~l~~~c---~~~l~~~~~~l~~~~~~~~ 584 (707)
+...+++|..... +.+. ..-+.+...+++.+++.+ .|...++.+++...+|- .+...||++.+...+..++
T Consensus 505 RRVa~ilg~Wvsv--q~~~--e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll 580 (978)
T KOG1993|consen 505 RRVAWILGQWVSV--QQKL--ELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLL 580 (978)
T ss_pred HHHHHHHhhhhhe--echH--hHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHH
Confidence 9999999975441 1122 245555566666666553 48889999999999875 5678899999999999888
Q ss_pred hccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhc
Q 005232 585 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 664 (707)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 664 (707)
..- -.-+.+..++..++.+|..+ .+++.++..-+++-+..+=.+..+ .+--.+..+..+-.+++++
T Consensus 581 ~~~----~e~Dtk~~VL~~ls~lI~r~-----~e~I~P~~~~ivq~lp~LWe~s~~-----e~lLr~alL~~L~~lV~al 646 (978)
T KOG1993|consen 581 KAV----EECDTKTSVLNLLSTLIERV-----SEHIAPYASTIVQYLPLLWEESEE-----EPLLRCALLATLRNLVNAL 646 (978)
T ss_pred HHH----hhhhhHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHhhhcc-----CcHHHHHHHHHHHHHHHHh
Confidence 752 12567889999998888774 445544444444444444333221 1222233445555566655
Q ss_pred C
Q 005232 665 N 665 (707)
Q Consensus 665 ~ 665 (707)
+
T Consensus 647 g 647 (978)
T KOG1993|consen 647 G 647 (978)
T ss_pred c
Confidence 4
No 17
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.60 E-value=4e-12 Score=138.61 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=107.7
Q ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCC-----CC
Q 005232 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE-----EL 75 (707)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~-----~l 75 (707)
|+....|+++-.+ .++||..++.||+.|++.++.++.-.....+..+...+...|.-|+..+||-|.+.|. .+
T Consensus 1 M~~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i 78 (947)
T COG5657 1 MEDLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSI 78 (947)
T ss_pred CCchHHHHHHHhh--cCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCC
Confidence 6777777766544 4778889999999999999999965555555555456778999999999999999995 36
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC
Q 005232 76 PSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS 136 (707)
Q Consensus 76 ~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~ 136 (707)
.+++...+|..++.++.+ .+..+.-|.+.+++.+|..++|++||+ +++++...+++
T Consensus 79 ~p~e~v~IR~~l~~lii~---s~n~l~iq~a~avs~IA~~DfPdeWpT--L~~DL~~~Ls~ 134 (947)
T COG5657 79 LPDENVLIRDELFSLIIS---SSNQLQIQNALAVSRIARLDFPDEWPT--LVPDLLSLLSE 134 (947)
T ss_pred CCccchHHHHHHHHHHHc---ccchHHHHHHHHHHHHHhccCcccchh--HHHHHHhhhcc
Confidence 667777999999999988 566666699999999999999999999 99999999876
No 18
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.33 E-value=5.7e-11 Score=124.10 Aligned_cols=203 Identities=20% Similarity=0.268 Sum_probs=122.0
Q ss_pred HHHHhhhcccCc-hhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhh--HHHHHHHHHHHHhhccCCCCC
Q 005232 318 VHALLEVASHPE-YDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF--RSAYESLVSLVSFRVQYPQDY 394 (707)
Q Consensus 318 ~~~ll~~~~~~~-~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~l~~k~~~p~d~ 394 (707)
.++|...+..+. +.++..++.|...+.+... ....| +|. ++.+++++.+|.-
T Consensus 143 w~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~--------------------~~~lf~~~~~----L~~Iie~VI~Pnl- 197 (370)
T PF08506_consen 143 WNLLTKISQQPKYDILVSKALQFLSSVAESPH--------------------HKNLFENKPH----LQQIIEKVIFPNL- 197 (370)
T ss_dssp HHHHTC--SSGGGHHHHHHHHHHHHHHHTSHH--------------------HHTTT-SHHH----HHHHHHHTHHHHH-
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHcchh--------------------HHHHhCCHHH----HHHHHHHhccCcc-
Confidence 344555444443 5677889999655443211 11122 344 4444455556641
Q ss_pred CCCChhhhHHH-----HHhhhcccc-cCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhh-cCCCCCCc
Q 005232 395 QDLSLEDLKEF-----KHTRYDLAC-CSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVAC-CGNKHNEW 467 (707)
Q Consensus 395 ~~~~~d~~~~f-----~~~R~~~~~-~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~-~~~~~~~w 467 (707)
.++++|.|.| +..|+++.+ |+.+ ||+++.|+++.++...+ ..+.+.+.+.+++.+.+ ..+++.+|
T Consensus 198 -~~~e~D~ElfEddP~EYIrrd~e~sd~~T------rR~AA~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w 269 (370)
T PF08506_consen 198 -CLREEDEELFEDDPEEYIRRDLEGSDSDT------RRRAACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNW 269 (370)
T ss_dssp -S--HHHHHHHHHSHHHHHHHHSCSS---S------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-H
T ss_pred -CCCHHHHHHHccCHHHHHHhhccccccCC------cHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccH
Confidence 0122333333 467888776 4443 89999999999998877 44555554444444321 11236789
Q ss_pred chhhHHHHHHHHhhccCCccc------ccc--HHHHHhh--cC----CCCChHHHHHHHHHHHHhhHHHHhhCCCCchhH
Q 005232 468 RPAEAALFCIRAISTYVSVVE------AEV--MPQVMAL--LP----KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL 533 (707)
Q Consensus 468 ~~~Ea~l~~l~~ia~~~~~~~------~~~--l~~l~~~--l~----~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l 533 (707)
+.+|+|++.+++++....... ++. +..++.. +| ....||.++..+|+++..|...+.. +.+
T Consensus 270 ~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~-----~~l 344 (370)
T PF08506_consen 270 RSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK-----EQL 344 (370)
T ss_dssp HHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H-----HHH
T ss_pred HHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH-----HHH
Confidence 999999999999998874321 111 3344432 23 2335899999999999999887654 278
Q ss_pred HHHHHHHHhccCCCh-HHHHHHHHHH
Q 005232 534 ASVLSILTSGMSTSE-DTAAAAALAF 558 (707)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~Aa~al 558 (707)
..+++.+.++|+++. .|..+||.|+
T Consensus 345 ~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 345 LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 999999999998876 6889999875
No 19
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.12 E-value=1.4e-10 Score=93.31 Aligned_cols=67 Identities=22% Similarity=0.373 Sum_probs=63.4
Q ss_pred HHHHHHHHhcC-hhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCC--------CCChhhHHHHHHHHHHHHH
Q 005232 26 ADRWLQDFQHT-IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE--------ELPSEAVRGLQDSLNTLLK 92 (707)
Q Consensus 26 A~~~L~~~q~s-~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~--------~l~~~~~~~lr~~Ll~~l~ 92 (707)
|+++|.+|+++ |++|..+..++.+++.+.++|+||+++||++|+++|. .+|++++..||+.|++.|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999 8999999999976667889999999999999999999 9999999999999999875
No 20
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=4e-05 Score=87.39 Aligned_cols=210 Identities=17% Similarity=0.126 Sum_probs=139.0
Q ss_pred CCCcchhhHHHHHHHHhhccCCcccc----c-cHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHH
Q 005232 464 HNEWRPAEAALFCIRAISTYVSVVEA----E-VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLS 538 (707)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~----~-~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~ 538 (707)
..+-+-+-||+++++.++..+.++-. + ++|.++..+-+ +.+++|..-+.-.+-.|++..... ....||+.+++
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS-TQNVRVQAHAAAALVNFSEECDKS-ILEPYLDGLME 477 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc-cCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHH
Confidence 35567778999999999999987632 2 23344443333 348899888888888777755542 11247888887
Q ss_pred HHHhccCC--ChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHH
Q 005232 539 ILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (707)
Q Consensus 539 ~l~~~l~~--~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 616 (707)
-.+..+.. ++.++..|..|+-.+++.+.+.+.||.+.+|..+.+++.+.+. +=...-|-+.||+++.+-.++..++.
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~-~d~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADD-KDLRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCc-hhhHHHHhhHHHHHHHHHHHhhhhhh
Confidence 54444433 2359999999999999999999999999999999999887431 11245678889999999888875555
Q ss_pred HHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHH
Q 005232 617 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFD 686 (707)
Q Consensus 617 ~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~ 686 (707)
.+..+.+++... ... ...... ....+-+.+...+.+-|.++ ..+.+++..++|.+-+..+
T Consensus 557 ~~~a~eliqll~----~~~-~~~~~~---dd~~~sy~~~~warmc~ilg--~~F~p~L~~Vmppl~~ta~ 616 (1075)
T KOG2171|consen 557 LPLAEELIQLLL----ELQ-GSDQDD---DDPLRSYMIAFWARMCRILG--DDFAPFLPVVMPPLLKTAR 616 (1075)
T ss_pred hHhHHHHHHHHH----hhc-ccchhh---ccccHHHHHHHHHHHHHHhc--hhhHhHHHHHhHHHHHhhc
Confidence 555555444443 332 111110 11223345566666666553 2356777778887766554
No 21
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.00017 Score=78.62 Aligned_cols=460 Identities=15% Similarity=0.157 Sum_probs=269.8
Q ss_pred chhHHHHHhccchhhcccccccCChHHHH----HHH-HHHH-HhhHHHHHHHHHhhhhhHHH--HHHHHHHHHHHhccCC
Q 005232 140 FVPGFLELLTVLPEEVFNYKIAARPERRR----QFE-KELT-SQMEVALSTLTACLHINELK--EQVLEAFASWLRLKHR 211 (707)
Q Consensus 140 ~~~~~L~~L~~L~EE~~~~~~~~~~~~r~----~~~-~~l~-~~~~~Vl~~l~~~l~~~~~~--~~~l~~l~sWi~~~~~ 211 (707)
.++.+|++|..=-|.-....++ +++-. .+- +..+ +.++.|+.|+.+-+++++.+ ..+.=.|.|-+. |+
T Consensus 320 v~P~Ll~~L~kqde~~d~DdWn--p~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~-gp- 395 (859)
T KOG1241|consen 320 VVPVLLELLTKQDEDDDDDDWN--PAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILE-GP- 395 (859)
T ss_pred hhHHHHHHHHhCCCCcccccCc--HHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhc-CC-
Confidence 4567777776644443332332 32221 222 2222 34578999999999887533 333333444333 21
Q ss_pred CCCccc--ccchhHHHHHhcCCCCccH--HHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHH
Q 005232 212 IPGSVL--ASHPLVLTALSSLHSEILS--EASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEE 287 (707)
Q Consensus 212 ~~~~~~--~~~~ll~~~~~~L~~~~~~--~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~ 287 (707)
..+.+ .....++.+...+.++.+. +.+.=+|..+....... ..+....+.+++-++. -+ .+.+-
T Consensus 396 -~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~-----~~n~~~l~~~l~~l~~---gL---~DePr 463 (859)
T KOG1241|consen 396 -EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA-----IINQELLQSKLSALLE---GL---NDEPR 463 (859)
T ss_pred -chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh-----cccHhhhhHHHHHHHH---Hh---hhCch
Confidence 11111 1234556666667777543 56666777777644311 1122222222221111 11 22334
Q ss_pred HHHHHHHHHHHHhhHHHHHHHcC----C--cchHHHHHHHhhhcccCc---hhhhhhhHHHHHHHHHHHhhccCccccCc
Q 005232 288 DVKAIARLFADMGDSYVELIATG----S--DESMLIVHALLEVASHPE---YDIASMTFNFWHSLQVILTKRDSYISFGN 358 (707)
Q Consensus 288 ~~~~l~~l~~~l~e~~~~~i~~~----~--~~~~~~~~~ll~~~~~~~---~~v~~~~l~FW~~l~~~l~~~~~~~~~~~ 358 (707)
...+.|.-|..+++........+ + +.+..++.-|+..+...+ ......+++-...+.....
T Consensus 464 va~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st---------- 533 (859)
T KOG1241|consen 464 VASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST---------- 533 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc----------
Confidence 56789999999999987766654 1 235678888888887643 4566666665444433211
Q ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHh
Q 005232 359 EASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAAS 438 (707)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~ 438 (707)
....|...++...+..|..---.-.-.+.+|+++|.+.-.- ++.+|..+.+
T Consensus 534 ------------~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~-----------------Lc~~Lq~i~r 584 (859)
T KOG1241|consen 534 ------------DDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSL-----------------LCNTLQSIIR 584 (859)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 12223333444444333211000112344667777777766 7778888888
Q ss_pred hcChH--HHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcC-CCC--ChHHHHHHHH
Q 005232 439 VLGGD--ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP--QQPQLLQTVC 513 (707)
Q Consensus 439 ~l~~~--~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l~--~~~~l~~t~~ 513 (707)
.+|++ ..-..++..+-+.+.+ . .+----|-++++++++++.+...-..++|.+...|. .+. ..-.|..++.
T Consensus 585 k~~~~~~~~~d~iM~lflri~~s-~---~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aV 660 (859)
T KOG1241|consen 585 KVGSDIREVSDQIMGLFLRIFES-K---RSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAV 660 (859)
T ss_pred HccccchhHHHHHHHHHHHHHcC-C---ccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 88752 1222333333333222 1 122224778999999999988775567788777764 243 2568999999
Q ss_pred HHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh---HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhcc-CC
Q 005232 514 LTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE---DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE-GS 589 (707)
Q Consensus 514 ~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~---~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~-~~ 589 (707)
.++|+.++-+...- ..|...+++-|+++|++|. .|...--..|..|+-.-..++.||++.++..+++.-+.. +.
T Consensus 661 glVgdl~raL~~~i--~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~ 738 (859)
T KOG1241|consen 661 GLVGDLARALEDDI--LPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDP 738 (859)
T ss_pred HHHHHHHHHHHhhh--hhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999887631 1278888899999998874 366677778999999889999999999999998876321 11
Q ss_pred --CCC---ChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhh
Q 005232 590 --LKV---SAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (707)
Q Consensus 590 --~~l---~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 662 (707)
+.+ -.+-|+.+++++.-++..+....-...+.+++.++++-+.++...+.- +....+.....|.-|+..|.
T Consensus 739 ~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~--~~~~~~~a~GlIgDL~~~fg 814 (859)
T KOG1241|consen 739 ADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDV--SEALHAAALGLIGDLATMFG 814 (859)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCccc--chHHHHHHHHHHHHHHHHcc
Confidence 111 134588899999888888764333456677788888888887765532 11223334445555554444
No 22
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.09 E-value=0.036 Score=62.50 Aligned_cols=518 Identities=13% Similarity=0.139 Sum_probs=260.4
Q ss_pred HHHHhhc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccccc
Q 005232 43 ADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW 121 (707)
Q Consensus 43 ~~~LL~~-~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W 121 (707)
...|+.. .+++-..||.|..=|-+.++++--.|..+.-.-+-..+++++.. .+.-|++---.+++-++.+...++-
T Consensus 7 ~i~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D---~ngEVQnlAVKClg~lvsKvke~~l 83 (1233)
T KOG1824|consen 7 GINLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED---KNGEVQNLAVKCLGPLVSKVKEDQL 83 (1233)
T ss_pred HHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHhhchHHHH
Confidence 3345542 24455799999999999999998788887766666677777765 4556777666688888876654444
Q ss_pred CCccchHHHHHhcCCCCCc-hh----HHHHHhccchhhcccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh----
Q 005232 122 GGGGIVNWLRDEMNSHPEF-VP----GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN---- 192 (707)
Q Consensus 122 ~~~~~i~~l~~~~~~~~~~-~~----~~L~~L~~L~EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~---- 192 (707)
.. +++.+...+-++.++ .. .+......+|--..+ .+ ++. -++.+...+.+.....
T Consensus 84 e~--~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~-~l--a~t-----------V~~~~t~~l~~~i~~qe~~s 147 (1233)
T KOG1824|consen 84 ET--IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSS-FL--AAT-----------VCKRITPKLKQAISKQEDVS 147 (1233)
T ss_pred HH--HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccc-cc--ccH-----------HHHHHHHHHHHHhhhcccch
Confidence 33 455554443222211 11 222222333321111 11 110 1122233333333221
Q ss_pred HHHHHHHHHHHHHHh-ccCCCCCcccccchhHHHHHhcCCCCc--cHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHH
Q 005232 193 ELKEQVLEAFASWLR-LKHRIPGSVLASHPLVLTALSSLHSEI--LSEASVNVISELIHYSAAGSSGGATVNMPLIQVIV 269 (707)
Q Consensus 193 ~~~~~~l~~l~sWi~-~~~~~~~~~~~~~~ll~~~~~~L~~~~--~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~ 269 (707)
.++-.+++.+...+. +|.-+|.- -..++..+...|+.+. ....|+-+|..+....... -+..+++.+.
T Consensus 148 ai~~e~lDil~d~lsr~g~ll~~f---h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~------ly~~li~~Ll 218 (1233)
T KOG1824|consen 148 AIKCEVLDILADVLSRFGTLLPNF---HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD------LYVELIEHLL 218 (1233)
T ss_pred hhHHHHHHHHHHHHHhhcccCcch---HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHH
Confidence 134444444444332 22112221 1234455555566654 4567888888887655311 1223333333
Q ss_pred HhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCcchHHHHHHHhhhc---ccCchhhhhhhHHHHHHHHHH
Q 005232 270 PQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVA---SHPEYDIASMTFNFWHSLQVI 346 (707)
Q Consensus 270 ~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~~~~~~~~~ll~~~---~~~~~~v~~~~l~FW~~l~~~ 346 (707)
.+ +... ......+.+..++.+++-..-.-+.+ +...++.++...+ ...+++..+.+++-...|...
T Consensus 219 ~~-------L~~~-~q~~~~rt~Iq~l~~i~r~ag~r~~~---h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 219 KG-------LSNR-TQMSATRTYIQCLAAICRQAGHRFGS---HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred hc-------cCCC-CchHHHHHHHHHHHHHHHHhcchhhc---ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 22 2111 12223444555555554333222222 3344566666665 445688888888876665542
Q ss_pred HhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCC-hhhhHHH------HHhhhcccccCCCc
Q 005232 347 LTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLS-LEDLKEF------KHTRYDLACCSSST 419 (707)
Q Consensus 347 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~-~d~~~~f------~~~R~~~~~~~~~~ 419 (707)
- .....|+..++++.++.+..|++.+..-+ +|+.++| .++-.+...|-+.+
T Consensus 288 c----------------------p~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~S 345 (1233)
T KOG1824|consen 288 C----------------------PKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMS 345 (1233)
T ss_pred C----------------------hhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchh
Confidence 2 12445666788888999999987532111 1111111 11111222244555
Q ss_pred hhhhhhhhhhhhHHHHH-----------HhhcChH----------HHHHHHHHHHHHHHhh----------------cCC
Q 005232 420 LTESVMLIAVADVLIDA-----------ASVLGGD----------ATLKILYIKFVEGVAC----------------CGN 462 (707)
Q Consensus 420 ~~~~~~~~~~~d~l~~~-----------~~~l~~~----------~~l~~l~~~l~~~~~~----------------~~~ 462 (707)
|. .||+++.++..+ +.-+||. .+-..++..+.+.+.+ ++.
T Consensus 346 Wk---VRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~ 422 (1233)
T KOG1824|consen 346 WK---VRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGT 422 (1233)
T ss_pred HH---HHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCC
Confidence 54 666676666543 2233321 0000111111111111 111
Q ss_pred CCCCcchhhHHHHHHHHhhccCCcccc-------ccHHHHHhhcCC----------------CC---ChHHHHHHHHHHH
Q 005232 463 KHNEWRPAEAALFCIRAISTYVSVVEA-------EVMPQVMALLPK----------------LP---QQPQLLQTVCLTI 516 (707)
Q Consensus 463 ~~~~w~~~Ea~l~~l~~ia~~~~~~~~-------~~l~~l~~~l~~----------------l~---~~~~l~~t~~~~i 516 (707)
+..-|--.+...+.+.+|++.+.++.- ..+..++..+|. ++ .....+..+ +
T Consensus 423 ~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~---L 499 (1233)
T KOG1824|consen 423 PSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDA---L 499 (1233)
T ss_pred ccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHH---H
Confidence 112266667778888888888774321 123334433332 11 112233333 3
Q ss_pred HhhHHHHhhC-CC-CchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhh---h-------hhcCCHHHHHHHHHHHh
Q 005232 517 GAYSKWFDAA-SS-DPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR---K-------KLCGYLDGLYNVYRTAV 584 (707)
Q Consensus 517 g~~~~~l~~~-p~-~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~---~-------~l~~~~~~l~~~~~~~~ 584 (707)
+....-+..| |+ +..+++...+.+..++.+|= -.-++.|+.-.++-|+ + ...||+..++....+.+
T Consensus 500 ~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f--yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL 577 (1233)
T KOG1824|consen 500 VFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF--YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRL 577 (1233)
T ss_pred HHHHHHHhcCChhhcccchhhhhhHHHHHhcCch--HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHH
Confidence 3333334433 22 12366677777777777763 3334445544444332 2 23378888888777776
Q ss_pred hccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHH
Q 005232 585 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQE 633 (707)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~ 633 (707)
.+.+ .+.+.+++++.++|.++..+. +....-+.+.+..++++|++
T Consensus 578 ~a~d---~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~eRl~n 622 (1233)
T KOG1824|consen 578 KATD---SDQEVKERAISCMGQIIANFG-DFLGNELPRTLPILLERLGN 622 (1233)
T ss_pred hccc---ccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhc
Confidence 6543 678899999999999999976 33334444555555555444
No 23
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.073 Score=56.88 Aligned_cols=187 Identities=15% Similarity=0.125 Sum_probs=117.7
Q ss_pred hhHHHHHHHHhhccCCccccccHHHHHhhcCC-CC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC
Q 005232 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (707)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 547 (707)
.+-.++++++++.++.+.-..+++.++..+.+ +- ....|..++..++|+++.-+...- ..|-...++-|.++++++
T Consensus 615 ~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df--~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 615 FGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF--NIYADVLMSSLVQCLSSE 692 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcCh
Confidence 34567888888887766544566666666543 32 357899999999999998777532 136666777888888776
Q ss_pred h---HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhcc-CCCCCC-hhhH----HHHHHHHHHHHhcCChHHHHH
Q 005232 548 E---DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE-GSLKVS-AEDS----LHLVEALSMVITELPQVDAKK 618 (707)
Q Consensus 548 ~---~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~-~~~~l~-~~~~----~~l~eai~~vi~~~p~~~~~~ 618 (707)
. ++...--..|..|+..-...+.+|++.++-.+++.-+.. .+.++. .+-+ ..+.++..-+..+.. +...
T Consensus 693 ~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~--nr~~ 770 (858)
T COG5215 693 ATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSK--NRVR 770 (858)
T ss_pred hhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhh--hhHH
Confidence 3 366677777888888888889999999999988875431 111222 1223 333444433333332 2345
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhh
Q 005232 619 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (707)
Q Consensus 619 ~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 662 (707)
.+.+++..+++.+..+...+.- ++...++....|.-|+..|.
T Consensus 771 ~v~Pyv~sif~~i~~iaeDp~~--se~~traalGLigDla~mfp 812 (858)
T COG5215 771 SVLPYVISIFHKIGMIAEDPNG--SEAHTRAALGLIGDLAGMFP 812 (858)
T ss_pred HhhhHHHHHHHHHHHhhcCCcc--chhHHHHHHHHHHHHHHhCC
Confidence 5666666677777776665432 22233444445555555543
No 24
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.049 Score=59.22 Aligned_cols=142 Identities=12% Similarity=0.127 Sum_probs=109.7
Q ss_pred cchhhHHHHHHHHhhccCCccccccHHHHHhhcC-CCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhcc
Q 005232 467 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM 544 (707)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l 544 (707)
..-+.++.-.++-+...+.+.-.+.+..++..+. +++ .+..+...+++.+|..+.-+..... +++.+++.-|+.-+
T Consensus 676 peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~--~~v~~vl~~L~~ii 753 (885)
T KOG2023|consen 676 PEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMK--QYVSPVLEDLITII 753 (885)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhh--hHHHHHHHHHHHHh
Confidence 3445788888888888876665556666666654 454 5778999999999999987775433 48888888777665
Q ss_pred CCC---hHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChH
Q 005232 545 STS---EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (707)
Q Consensus 545 ~~~---~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 614 (707)
+.+ ..+..-.|.++.++..-|.+.+.||++.++.-....+.+- -+.+++...+.|++.++..-|..
T Consensus 754 n~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i----~DneEK~sAFrG~c~mi~vNp~~ 822 (885)
T KOG2023|consen 754 NRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNI----DDNEEKESAFRGLCNMINVNPSG 822 (885)
T ss_pred cccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhccc----ccchhHHHHHHHHHHheeeCchh
Confidence 554 3577888999999999999999999999998777766541 24678999999999999998753
No 25
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.59 E-value=0.00016 Score=77.62 Aligned_cols=113 Identities=13% Similarity=0.215 Sum_probs=78.6
Q ss_pred hhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCccccc
Q 005232 566 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK 645 (707)
Q Consensus 566 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~ 645 (707)
+..+.|++.++++.+..++..++ ..+.+++|+++++++..... ...++...++.-+.+.+..+.+ +|+|+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~-----s~ENeylMk~iMRvl~~~~e-~~~p~~~~il~~L~~il~~v~k----NPsnP 86 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPG-----SAENEYLMKCIMRVLSVLQE-DILPIAVEILQHLTAILKEVSK----NPSNP 86 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT------STC-HHHHHHHHHHHHHSTT-TTGGGHHHHHHHHHHHHHHHHT----S---H
T ss_pred HHHhhhhHHHHHHHHHHHHhcCC-----CccchHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHh----CCCCc
Confidence 45788999999999999987643 36799999999999999753 3344555555555555544444 45555
Q ss_pred CchhhhHHHHHHHHHhhhcCCccc--HHHHHHHHhHHHHHHHHhhcC
Q 005232 646 HPRDLTVHIDRFAYIFRYVNHPEA--VADAIQRLWPIFKAIFDIRAW 690 (707)
Q Consensus 646 ~~~~~~~~i~~l~~~~~~~~~~~p--~~~~~~~~~p~l~~i~~~~~~ 690 (707)
.+.| +.++.++.++|.+...+| +..+.+.+||++..|+++-..
T Consensus 87 ~FnH--ylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~ 131 (435)
T PF03378_consen 87 RFNH--YLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ 131 (435)
T ss_dssp HHHH--HHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T
T ss_pred chhh--hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556 689999999999765443 568899999999999998544
No 26
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0025 Score=68.78 Aligned_cols=165 Identities=16% Similarity=0.279 Sum_probs=117.4
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-C-CChH
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQP 506 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l-~~~~ 506 (707)
....+++|....+...++..+...+.+ ..||.+.+++..++++++..+..-+..+|.++..+.+ + ..||
T Consensus 239 a~kai~~~~~~~aVK~llpsll~~l~~---------~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~ 309 (569)
T KOG1242|consen 239 AAKAIMRCLSAYAVKLLLPSLLGSLLE---------AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKP 309 (569)
T ss_pred HHHHHHHhcCcchhhHhhhhhHHHHHH---------HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCH
Confidence 444555555555555555555444432 3699999999999999999887655566777766654 3 3599
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh--------------------------------------
Q 005232 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-------------------------------------- 548 (707)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-------------------------------------- 548 (707)
.||.++..++-+|+..+.+ |+ +...++.++.++.+|.
T Consensus 310 evr~a~~~~l~~~~svidN-~d----I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR 384 (569)
T KOG1242|consen 310 EVRKAGIETLLKFGSVIDN-PD----IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER 384 (569)
T ss_pred HHHHHHHHHHHHHHHhhcc-HH----HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc
Confidence 9999999999999998764 43 4444444444444331
Q ss_pred --HHHHHHHHHHHHHHHHh--hhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCC
Q 005232 549 --DTAAAAALAFRHICDDC--RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (707)
Q Consensus 549 --~v~~~Aa~al~~l~~~c--~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 612 (707)
...+.++..+.++|..- ...+.||++.|+..+...+.. ..++.|.-...++|..+..+.
T Consensus 385 st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d-----~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 385 STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD-----AVPEVRAVAARALGALLERLG 447 (569)
T ss_pred cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC-----CChhHHHHHHHHHHHHHHHHH
Confidence 13346677777777766 567889999999999988764 357889999999998888864
No 27
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.21 E-value=0.64 Score=52.98 Aligned_cols=161 Identities=11% Similarity=0.077 Sum_probs=106.7
Q ss_pred CCcchhhHHHHHHHHhhccCCccccccHHHHHhhcC-CC-CChHHHHHHHHHHHHhhHHHHhh-CC----CCchhHHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDA-AS----SDPSILASVL 537 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l-~~~~~l~~t~~~~ig~~~~~l~~-~p----~~~~~l~~~l 537 (707)
.+=-.+++..|..+.++..-++.-.++++.+...+. .. .+.+++.+-++.+.++|.+.+.. +| +...+..+++
T Consensus 491 ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~ 570 (1233)
T KOG1824|consen 491 SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY 570 (1233)
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH
Confidence 344568899999888887766654455555444332 12 23688999999999999998874 22 1124666666
Q ss_pred HHHHhccC----CChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCCh
Q 005232 538 SILTSGMS----TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (707)
Q Consensus 538 ~~l~~~l~----~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (707)
....+.+. +.+ |+.+|-.++..+.......+...++..+..+.+-+.+ .-.|.-.++|++.|..+.-.
T Consensus 571 ~~tl~rL~a~d~Dqe-VkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n-------EiTRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQE-VKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN-------EITRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred HHHHHHHhcccccHH-HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-------hhHHHHHHHHHHHHHhccce
Confidence 66555553 334 9999999999999888888888888888777666554 33688899999988776322
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 005232 614 VDAKKALEMLCLPVVTPLQE 633 (707)
Q Consensus 614 ~~~~~~l~~l~~p~~~~L~~ 633 (707)
-...+.+..++.-+...+.+
T Consensus 643 i~l~~~l~~il~~l~~flrK 662 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRK 662 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHH
Confidence 22334444444444444443
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.14 E-value=0.68 Score=52.08 Aligned_cols=452 Identities=13% Similarity=0.150 Sum_probs=230.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-hhHHHHH-HHHhhc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHH
Q 005232 16 HHPDDAVRMQADRWLQDFQHT-IDAWQVA-DNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (707)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~s-~~aw~~~-~~LL~~-~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (707)
.++|...|+-+.-++..+... ++..-++ ..+..+ .+.++.+|-.|..++-+-. +++....+-..+.+.+.
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~ 124 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLS 124 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhc
Confidence 466888999999998887765 5534433 333322 1456678888888887743 45555566666666555
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhHHHHHhccchhhcccccccCChHHHHHHH
Q 005232 93 KFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIAARPERRRQFE 171 (707)
Q Consensus 93 ~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~-~~~~~~~L~~L~~L~EE~~~~~~~~~~~~r~~~~ 171 (707)
. ..+.||++-+.++..+....+. .-+.. +++.+.+.+... +......+.++..+ .. + + +.
T Consensus 125 ~---~~~~VRk~A~~~l~~i~~~~p~-~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~-~------~--~~--- 185 (526)
T PF01602_consen 125 D---PSPYVRKKAALALLKIYRKDPD-LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI--KC-N------D--DS--- 185 (526)
T ss_dssp S---SSHHHHHHHHHHHHHHHHHCHC-CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH--HC-T------H--HH---
T ss_pred C---CchHHHHHHHHHHHHHhccCHH-HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH--cc-C------c--ch---
Confidence 4 6779999999999888776442 22221 345555555432 22233445555444 00 0 0 00
Q ss_pred HHHHHhhHHHHHHHHHhhhh--hHHHHHHHHHHHHHHhccCCCCCccccc--chhHHHHHhcCCC--CccHHHHHHHHHH
Q 005232 172 KELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLAS--HPLVLTALSSLHS--EILSEASVNVISE 245 (707)
Q Consensus 172 ~~l~~~~~~Vl~~l~~~l~~--~~~~~~~l~~l~sWi~~~~~~~~~~~~~--~~ll~~~~~~L~~--~~~~~~a~~~l~~ 245 (707)
.....+.+...+.+.+.. +-.+..+++++..+... +.-.. ..+++.+...+++ +.+.-.|+.++..
T Consensus 186 --~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~------~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 186 --YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM------EPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp --HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC------ChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 001122333333333222 22455666776543331 11111 2456656555542 1222233333332
Q ss_pred HHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCcchHHHHHHHhhhc
Q 005232 246 LIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVA 325 (707)
Q Consensus 246 ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~~~~~~~~~ll~~~ 325 (707)
+. . ....+..+++.+.. +.. +.|.+..-...+.+..++..+...+. + ....+.+.
T Consensus 258 l~---~---------~~~~~~~~~~~L~~----lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~-~-------~~~~~~~l 312 (526)
T PF01602_consen 258 LS---P---------SPELLQKAINPLIK----LLS-SSDPNVRYIALDSLSQLAQSNPPAVF-N-------QSLILFFL 312 (526)
T ss_dssp HS---S---------SHHHHHHHHHHHHH----HHT-SSSHHHHHHHHHHHHHHCCHCHHHHG-T-------HHHHHHHH
T ss_pred hh---c---------chHHHHhhHHHHHH----Hhh-cccchhehhHHHHHHHhhcccchhhh-h-------hhhhhhee
Confidence 22 1 22333333333222 222 33433222233555555555533332 1 12222233
Q ss_pred c-cCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHH
Q 005232 326 S-HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKE 404 (707)
Q Consensus 326 ~-~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~ 404 (707)
. .++..+...+++-.+.+.+. +.... +++.+...+. +. .|
T Consensus 313 ~~~~d~~Ir~~~l~lL~~l~~~------------------------~n~~~----Il~eL~~~l~---~~-----~d--- 353 (526)
T PF01602_consen 313 LYDDDPSIRKKALDLLYKLANE------------------------SNVKE----ILDELLKYLS---EL-----SD--- 353 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH--H------------------------HHHHH----HHHHHHHHHH---HC----------
T ss_pred cCCCChhHHHHHHHHHhhcccc------------------------cchhh----HHHHHHHHHH---hc-----cc---
Confidence 3 55667777777765555431 11122 3333333220 00 00
Q ss_pred HHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcCh--HHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhc
Q 005232 405 FKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIST 482 (707)
Q Consensus 405 f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~ 482 (707)
.++|.+ +...+..++....+ +.++..+.+.+.. ....-.+.+...+..+..
T Consensus 354 -~~~~~~-----------------~i~~I~~la~~~~~~~~~~v~~l~~ll~~---------~~~~~~~~~~~~i~~ll~ 406 (526)
T PF01602_consen 354 -PDFRRE-----------------LIKAIGDLAEKFPPDAEWYVDTLLKLLEI---------SGDYVSNEIINVIRDLLS 406 (526)
T ss_dssp -HHHHHH-----------------HHHHHHHHHHHHGSSHHHHHHHHHHHHHC---------TGGGCHCHHHHHHHHHHH
T ss_pred -hhhhhh-----------------HHHHHHHHHhccCchHHHHHHHHHHhhhh---------ccccccchHHHHHHHHhh
Confidence 126666 66677766655542 4566666555542 112224555666666666
Q ss_pred cCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-hHHHHHHHHHHHHH
Q 005232 483 YVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHI 561 (707)
Q Consensus 483 ~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l 561 (707)
..+......+..+++.+.... ++.++.++++++|.|++.... .+ ..+.++..+...+... ..++...-.++.++
T Consensus 407 ~~~~~~~~~l~~L~~~l~~~~-~~~~~~~~~wilGEy~~~~~~-~~---~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl 481 (526)
T PF01602_consen 407 NNPELREKILKKLIELLEDIS-SPEALAAAIWILGEYGELIEN-TE---SAPDILRSLIENFIEESPEVKLQILTALAKL 481 (526)
T ss_dssp HSTTTHHHHHHHHHHHHTSSS-SHHHHHHHHHHHHHHCHHHTT-TT---HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhh-HHHHHHHHHhhhcccCCcccc-cc---cHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 655444456788888887744 788999999999999998875 11 4566666666554433 24888888888888
Q ss_pred HHHhhh-hhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHH
Q 005232 562 CDDCRK-KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEA 603 (707)
Q Consensus 562 ~~~c~~-~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~ea 603 (707)
...... ... +.+++.+...... + ..+.+.|.+..+-
T Consensus 482 ~~~~~~~~~~---~~i~~~~~~~~~~-~--s~~~evr~Ra~~y 518 (526)
T PF01602_consen 482 FKRNPENEVQ---NEILQFLLSLATE-D--SSDPEVRDRAREY 518 (526)
T ss_dssp HHHSCSTTHH---HHHHHHHHCHHHH-S---SSHHHHHHHHHH
T ss_pred HhhCCchhhH---HHHHHHHHHHhcc-C--CCCHHHHHHHHHH
Confidence 765432 122 2444555444431 0 1235555554443
No 29
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.049 Score=64.60 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCcc-ccccHHHHHhhcCC-CC-ChHHHHHHHHHHHHhhHHHHh
Q 005232 448 ILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFD 524 (707)
Q Consensus 448 ~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~-l~-~~~~l~~t~~~~ig~~~~~l~ 524 (707)
++.+.+.+.+.+.. +..||-+||++.++.-+-.+=+.+ ..+.+|.+...+.+ +. .+--||.++=.+....+....
T Consensus 1036 y~neIl~eLL~~lt--~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1036 YLNEILDELLVNLT--SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444544443322 467999999999998887775443 24667777776554 22 244566555444333333333
Q ss_pred h-----CCC-CchhHHHHHHHHHh-c-cCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh
Q 005232 525 A-----ASS-DPSILASVLSILTS-G-MSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (707)
Q Consensus 525 ~-----~p~-~~~~l~~~l~~l~~-~-l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~ 585 (707)
+ |+. +.+.+..+|+++.. | ++.-+.++..+-..+.++.+...+.|.||++.++-.+.+++.
T Consensus 1114 r~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred hhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc
Confidence 2 222 23689999999973 3 433335999999999999999999999999999988888765
No 30
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.17 E-value=0.019 Score=47.80 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhc
Q 005232 509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (707)
Q Consensus 509 ~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~ 586 (707)
|+.++..+...+--+..+. ..+++.+++.++.+++++. .|+-+|+.||.++++.++..+.+|++.++..+..+...
T Consensus 3 R~ggli~Laa~ai~l~~~~--~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDI--SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhH--HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455555555555555442 2588999999999998875 59999999999999999999999999999998888654
No 31
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.10 E-value=3.2 Score=46.36 Aligned_cols=171 Identities=11% Similarity=0.136 Sum_probs=102.7
Q ss_pred hhhHHHHHHhhcChHH----HHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcC-CCC
Q 005232 429 VADVLIDAASVLGGDA----TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP 503 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~----~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l~ 503 (707)
+.+++..++..+|... .-+.++.-+--+++. +. .+.-..+-+++.+...+.....+++|++++.+. .+-
T Consensus 736 ~~etv~ri~~~lg~~diderleE~lidgil~Afqe----qt--t~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLn 809 (1172)
T KOG0213|consen 736 VAETVSRIVGRLGAADIDERLEERLIDGILYAFQE----QT--TEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLN 809 (1172)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHh----cc--cchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhc
Confidence 7788888888777422 222222222222211 11 111256778888888887777789999998654 343
Q ss_pred -ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHhh-hhhcCCHHHHHHH
Q 005232 504 -QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCR-KKLCGYLDGLYNV 579 (707)
Q Consensus 504 -~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~--~~~v~~~Aa~al~~l~~~c~-~~l~~~~~~l~~~ 579 (707)
..|.+|..+.+++|+.+.-++...+. +.+..+=..|...+.. |+ +-..--.|+..|+.--. ..+.|-+..|+-.
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee-~~m~~lGvvLyEylgeeypE-vLgsILgAikaI~nvigm~km~pPi~dllPr 887 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEE-KLMGHLGVVLYEYLGEEYPE-VLGSILGAIKAIVNVIGMTKMTPPIKDLLPR 887 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHH-HHHHHhhHHHHHhcCcccHH-HHHHHHHHHHHHHHhccccccCCChhhhccc
Confidence 36899999999999999988875431 2344443444455544 45 55555556666654331 2355666667766
Q ss_pred HHHHhhccCCCCCChhhHHHHHHHHHHHHhcCC
Q 005232 580 YRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (707)
Q Consensus 580 ~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 612 (707)
+..++.+. -.+.+..-+.-+|.+.-.-|
T Consensus 888 ltPILknr-----heKVqen~IdLvg~Iadrgp 915 (1172)
T KOG0213|consen 888 LTPILKNR-----HEKVQENCIDLVGTIADRGP 915 (1172)
T ss_pred chHhhhhh-----HHHHHHHHHHHHHHHHhcCc
Confidence 66666542 13455666666777666654
No 32
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.04 E-value=0.018 Score=47.88 Aligned_cols=91 Identities=11% Similarity=0.142 Sum_probs=67.7
Q ss_pred hhHHHHHHHHhhccCCccccccHHHHHhhcCC-CC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC
Q 005232 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (707)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 547 (707)
+-++|.++++++..+...-.++++.+++.+.. +. ++++||+.+|+.++..+...... ...+++.++..+.+.+.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~--~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE--ILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 45899999999999988766777888876543 43 58999999999999999877642 2236788888888888887
Q ss_pred hHHHHHHHHHHHHHH
Q 005232 548 EDTAAAAALAFRHIC 562 (707)
Q Consensus 548 ~~v~~~Aa~al~~l~ 562 (707)
+.-...||..+.++.
T Consensus 81 d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 81 DENVRSAAELLDRLL 95 (97)
T ss_pred chhHHHHHHHHHHHh
Confidence 533344555565543
No 33
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=4.9 Score=46.53 Aligned_cols=390 Identities=12% Similarity=0.139 Sum_probs=199.5
Q ss_pred HHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCcc--HHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhh
Q 005232 197 QVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL--SEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS 274 (707)
Q Consensus 197 ~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~--~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~ 274 (707)
..-.|+..-+.- ..|. . ...+++.+-..|++++. --.|.-|+.++........+++-..-...++.++|.+++
T Consensus 108 ql~~~l~~Ii~~--D~p~-~--Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~ 182 (1010)
T KOG1991|consen 108 QLTACLNTIIKA--DYPE-Q--WPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQ 182 (1010)
T ss_pred HHHHHHHHHHhc--CCcc-c--chhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH
Confidence 333444444442 3442 2 34688888888888764 357888999999765433222111223467788888887
Q ss_pred hHHHhccCC-C-CHHHHHHHHHHHHHHhhHHHHHHHcCCcchHHHHHHHhhhcccCc-----------------hhhhhh
Q 005232 275 LKAHLTDSS-K-DEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPE-----------------YDIASM 335 (707)
Q Consensus 275 l~~~l~~~~-~-d~~~~~~l~~l~~~l~e~~~~~i~~~~~~~~~~~~~ll~~~~~~~-----------------~~v~~~ 335 (707)
+...+.... . ..+..+-++++|-+++..-.+.-..+++.+..-+++.+.+...|- +.+..=
T Consensus 183 ~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKW 262 (1010)
T KOG1991|consen 183 IFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKW 262 (1010)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHH
Confidence 666543322 1 224566777888777665555444455556666777777766441 235566
Q ss_pred hHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhH-HHHHHHHHHHHhhcc-CCCCCCCCChhhhHHHHHhhhccc
Q 005232 336 TFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFR-SAYESLVSLVSFRVQ-YPQDYQDLSLEDLKEFKHTRYDLA 413 (707)
Q Consensus 336 ~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~l~~k~~-~p~d~~~~~~d~~~~f~~~R~~~~ 413 (707)
++.+.+++.+...+. ++.. .+-....+.|- .+...++.++++... |-. ..|-.++..-|
T Consensus 263 a~~~L~Rlf~Ryg~~-~~~~--------~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~--~~yls~rvl~~-------- 323 (1010)
T KOG1991|consen 263 ALHILNRLFERYGSP-SLVV--------PEYKEFAQMFLKNFAQGILEVFLKILEQWRQ--QLYLSDRVLYY-------- 323 (1010)
T ss_pred HHHHHHHHHHHhCCc-cccc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCHHHHHH--------
Confidence 777777766543221 0000 00011122222 233444444443221 111 12322222111
Q ss_pred ccCCCchhhhhhhhhhhhHHHH------HHhhcChHHHHHHHHHHHHHHHhh----cCCCCCCcc---------------
Q 005232 414 CCSSSTLTESVMLIAVADVLID------AASVLGGDATLKILYIKFVEGVAC----CGNKHNEWR--------------- 468 (707)
Q Consensus 414 ~~~~~~~~~~~~~~~~~d~l~~------~~~~l~~~~~l~~l~~~l~~~~~~----~~~~~~~w~--------------- 468 (707)
+.+.+.. .+..++|. +.-.++..+.. +.+...-|+
T Consensus 324 ---------------~l~fl~~~Vs~~~twkll~PH-----l~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~e 383 (1010)
T KOG1991|consen 324 ---------------LLNFLEQCVSHASTWKLLKPH-----LQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFE 383 (1010)
T ss_pred ---------------HHHHHHHhccHHHHHHHhhhH-----HHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhc
Confidence 1122211 22333321 11112221110 000011222
Q ss_pred ----hhhHHHHHHHHhhccC-CccccccHHHHHhhcCC-----CC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHH-HH
Q 005232 469 ----PAEAALFCIRAISTYV-SVVEAEVMPQVMALLPK-----LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILA-SV 536 (707)
Q Consensus 469 ----~~Ea~l~~l~~ia~~~-~~~~~~~l~~l~~~l~~-----l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~-~~ 536 (707)
..=|++.++..++..= .+.-...++-+++++.+ .| .+|+-..-++.++|+.++.+.+..-+...++ -+
T Consensus 384 d~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl 463 (1010)
T KOG1991|consen 384 DGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL 463 (1010)
T ss_pred ccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 1125555555444332 22222233334444432 12 2689999999999999998876432221233 33
Q ss_pred HHHHHhccCCCh-HHHHHHHHHHHHHHH-HhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChH
Q 005232 537 LSILTSGMSTSE-DTAAAAALAFRHICD-DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (707)
Q Consensus 537 l~~l~~~l~~~~-~v~~~Aa~al~~l~~-~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 614 (707)
.+.++..+++|- -++++||.-+..+|+ +-+.. ..+...+....+.+.+.. . -..+....-|+-..|+..+
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~--~~l~~ale~t~~~l~~d~--~--lPV~VeAalALq~fI~~~~-- 535 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDP--NNLSEALELTHNCLLNDN--E--LPVRVEAALALQSFISNQE-- 535 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCCh--HHHHHHHHHHHHHhccCC--c--CchhhHHHHHHHHHHhcch--
Confidence 356666677774 389999999999984 32221 112223332222222111 1 2246666777777788753
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhcC
Q 005232 615 DAKKALEMLCLPVVTPLQEIINQG 638 (707)
Q Consensus 615 ~~~~~l~~l~~p~~~~L~~~~~~~ 638 (707)
...+++.+.+.|+++.|-++.+..
T Consensus 536 ~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 536 QADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHhc
Confidence 345789999999999999988765
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.86 E-value=0.17 Score=49.92 Aligned_cols=162 Identities=14% Similarity=0.220 Sum_probs=94.0
Q ss_pred CCCcchhhHHHHHHHHhhccC-Cccc-ccc---HHHHHhhcC-CCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH
Q 005232 464 HNEWRPAEAALFCIRAISTYV-SVVE-AEV---MPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASV 536 (707)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~-~~~~-~~~---l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~ 536 (707)
..+|..+..++--+..+..+- +.+. ..+ +..++..+. .+. ....|..++|.+++.++..+..+-+ .+++.+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~--~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE--PYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH--HHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH--HHHHHH
Confidence 578999999999999987765 2221 111 222222221 333 2567999999999999998887632 478888
Q ss_pred HHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHH-HHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCCh-
Q 005232 537 LSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGL-YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ- 613 (707)
Q Consensus 537 l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~- 613 (707)
++.|+..+.++. .++..|..++..+++.|. +.+.+ ...+...... -+...|...++.+..++...+.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~-----Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKS-----KNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT------S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHccch
Confidence 888888887764 588899999999998776 11122 3344433332 3477899999999999999882
Q ss_pred -HHHHHHHHHhhhhhHHHHHHHHhcCC
Q 005232 614 -VDAKKALEMLCLPVVTPLQEIINQGP 639 (707)
Q Consensus 614 -~~~~~~l~~l~~p~~~~L~~~~~~~~ 639 (707)
..... ...+..+...+.+++..++
T Consensus 166 ~~~l~~--~~~~~~l~~~l~~~l~D~~ 190 (228)
T PF12348_consen 166 SSVLQK--SAFLKQLVKALVKLLSDAD 190 (228)
T ss_dssp -GGG----HHHHHHHHHHHHHHHTSS-
T ss_pred Hhhhcc--cchHHHHHHHHHHHCCCCC
Confidence 22211 1123445555566666543
No 35
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.78 E-value=3.7 Score=44.54 Aligned_cols=197 Identities=16% Similarity=0.169 Sum_probs=111.5
Q ss_pred CCcchhhHHHHHHHHhhccCCccc--cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHH--HHhhCCCCchhHHHHHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVVE--AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK--WFDAASSDPSILASVLSIL 540 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~--~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~--~l~~~p~~~~~l~~~l~~l 540 (707)
.++...-+++.+++++......++ ++++..+.+.+.. ...+..+..++.++.-.++ -++.||. -...++.+
T Consensus 202 ~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~Wi~KaLv~R~~~~----~~~~~~~L 276 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS-SEDSELRPQALEILIWITKALVMRGHPL----ATELLDKL 276 (415)
T ss_pred CChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc-cCCcchhHHHHHHHHHHHHHHHHcCCch----HHHHHHHH
Confidence 335667788999999998865543 2334444444411 1122333333333322222 3445664 55666666
Q ss_pred HhccCCChHHHHHHHHHHHHHHHHhhhhhc--------C-CHHHHHHHHHH-HhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 541 TSGMSTSEDTAAAAALAFRHICDDCRKKLC--------G-YLDGLYNVYRT-AVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 541 ~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~--------~-~~~~l~~~~~~-~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
+..+.+++ ++..||.+|.-+..+....+. + |-.-+++.+.. ++++-. ..+.+.+...+.|+++++..
T Consensus 277 ~~lL~~~~-~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~--~~~~~~k~~yL~ALs~ll~~ 353 (415)
T PF12460_consen 277 LELLSSPE-LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK--EADDEIKSNYLTALSHLLKN 353 (415)
T ss_pred HHHhCChh-hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh--hcChhhHHHHHHHHHHHHhh
Confidence 77778877 999999999999987443322 1 22222222211 222110 12234678889999999999
Q ss_pred CChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHH
Q 005232 611 LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFK 682 (707)
Q Consensus 611 ~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~ 682 (707)
+|.+-..+.+..++.-+++.| ..++ ..-....++.+..+++.- |+-+.+-++.+.|.|-
T Consensus 354 vP~~vl~~~l~~LlPLLlqsL----~~~~-------~~v~~s~L~tL~~~l~~~--~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 354 VPKSVLLPELPTLLPLLLQSL----SLPD-------ADVLLSSLETLKMILEEA--PELISEHLSSLIPRLL 412 (415)
T ss_pred CCHHHHHHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHH
Confidence 998877788888888777665 2221 112334556666665531 3334445666666554
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=95.31 E-value=7.7 Score=45.08 Aligned_cols=126 Identities=12% Similarity=0.100 Sum_probs=70.8
Q ss_pred CCCCHHHHHHHHHHHHHHhc-Chh-HHHHHHHHhhc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHH
Q 005232 16 HHPDDAVRMQADRWLQDFQH-TID-AWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (707)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~-s~~-aw~~~~~LL~~-~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~ 92 (707)
.++|.+.|+-.--||..+-+ .|+ +-..+..+..+ .+.++.+|-.|..+|-..-. + .+-+.++..+.
T Consensus 78 ~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-------~----~i~e~l~~~lk 146 (746)
T PTZ00429 78 PSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-------S----SVLEYTLEPLR 146 (746)
T ss_pred CCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-------H----HHHHHHHHHHH
Confidence 45677777778888877665 455 44444555442 13456677777776654211 1 12223333333
Q ss_pred Hh-cCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhHHHHHhccchh
Q 005232 93 KF-HKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPE 153 (707)
Q Consensus 93 ~~-~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~-~~~~~~~L~~L~~L~E 153 (707)
+. ...++.||+.-+.+++-+....+ +.-++.++++.+.+.+... +......+..|..+.+
T Consensus 147 k~L~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 147 RAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 32 23578999998888888765443 2222223566777766543 3334455666665544
No 37
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.04 E-value=0.023 Score=41.78 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHH
Q 005232 506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHI 561 (707)
Q Consensus 506 ~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l 561 (707)
|.||..+++.||+.+.-.... ...+++.+++.|...+.+++ .|+..|+.||.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~--~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL--LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH--HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 689999999999865221111 01378899999999997654 5999999998764
No 38
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.76 E-value=0.39 Score=52.37 Aligned_cols=227 Identities=14% Similarity=0.166 Sum_probs=123.9
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccc-cccHHHHHhhcCCCCChHH
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQ 507 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l~~~~~ 507 (707)
.+=.+...+..+|+. .-+++...+...+...++ ..=.-++|+.++..++...++... ..++|.++..+..- ..+
T Consensus 195 ~~~a~~~~~~~Lg~~-~EPyiv~~lp~il~~~~d--~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~--kWr 269 (569)
T KOG1242|consen 195 ALLAFEAAQGNLGPP-FEPYIVPILPSILTNFGD--KINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA--KWR 269 (569)
T ss_pred HHHHHHHHHHhcCCC-CCchHHhhHHHHHHHhhc--cchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH--hhh
Confidence 444555666777742 333333344333322222 222346899999999998888753 34455555443321 456
Q ss_pred HHHHHHHHHHhhHHHHhhCCCC-chhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh-hhcCCHHHHHHHHHHHh
Q 005232 508 LLQTVCLTIGAYSKWFDAASSD-PSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK-KLCGYLDGLYNVYRTAV 584 (707)
Q Consensus 508 l~~t~~~~ig~~~~~l~~~p~~-~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~-~l~~~~~~l~~~~~~~~ 584 (707)
-...++.++|..++-- |.. ..+++.+++-+...|.+.+ .++.++-.++.++|+--+. .+.++++.+++.+..-.
T Consensus 270 tK~aslellg~m~~~a---p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 270 TKMASLELLGAMADCA---PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred hHHHHHHHHHHHHHhc---hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc
Confidence 6777888888765432 321 1477888888888886643 4999999999999987654 35566666666654211
Q ss_pred hccCCCCCChhhHHHHHHHHHH--HHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhh
Q 005232 585 NGEGSLKVSAEDSLHLVEALSM--VITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (707)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~--vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 662 (707)
. .-...+++++. .+..+. .+.+ .++-|++ ++-+.+-+. ...+..+..++-++.++
T Consensus 347 ~----------~~~e~~~~L~~ttFV~~V~----~psL-almvpiL---~R~l~eRst----~~kr~t~~IidNm~~Lv- 403 (569)
T KOG1242|consen 347 C----------YTPECLDSLGATTFVAEVD----APSL-ALMVPIL---KRGLAERST----SIKRKTAIIIDNMCKLV- 403 (569)
T ss_pred c----------chHHHHHhhcceeeeeeec----chhH-HHHHHHH---HHHHhhccc----hhhhhHHHHHHHHHHhh-
Confidence 0 11222222221 111111 1222 3334443 222322211 12233444455555553
Q ss_pred hcCCcccHHHHHHHHhHHHHHHHHhh
Q 005232 663 YVNHPEAVADAIQRLWPIFKAIFDIR 688 (707)
Q Consensus 663 ~~~~~~p~~~~~~~~~p~l~~i~~~~ 688 (707)
..|.-+.+++.++.|-++.++..-
T Consensus 404 --eDp~~lapfl~~Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 404 --EDPKDLAPFLPSLLPGLKENLDDA 427 (569)
T ss_pred --cCHHHHhhhHHHHhhHHHHHhcCC
Confidence 235556778888888888877654
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.12 E-value=4.3 Score=45.57 Aligned_cols=143 Identities=13% Similarity=0.160 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccc-cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHH
Q 005232 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWF 523 (707)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l 523 (707)
.+-...+.+..-+. ..+-..+-.||-+++.++ .++- ..+++.+.+.+. .++|.||++++.++.++...
T Consensus 76 ~~~l~~n~l~kdl~-----~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~- 144 (526)
T PF01602_consen 76 LLILIINSLQKDLN-----SPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLS--DPSPYVRKKAALALLKIYRK- 144 (526)
T ss_dssp HHHHHHHHHHHHHC-----SSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhc-----CCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhc--CCchHHHHHHHHHHHHHhcc-
Confidence 33334455544332 233333455566655555 3321 122333333332 34899999999999887643
Q ss_pred hhCCCCchhHHH-HHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhh-cCCHHHHHHHHHHHhhccCCCCCChhhHHHH
Q 005232 524 DAASSDPSILAS-VLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 600 (707)
Q Consensus 524 ~~~p~~~~~l~~-~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l 600 (707)
.|+ .++. +++.+.+.+.++. .+...|..++..+ .+.... .+.++.++..+.+++.. .++..+..+
T Consensus 145 --~p~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~-----~~~~~q~~i 212 (526)
T PF01602_consen 145 --DPD---LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSD-----PDPWLQIKI 212 (526)
T ss_dssp --CHC---CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTC-----CSHHHHHHH
T ss_pred --CHH---HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccc-----cchHHHHHH
Confidence 666 5555 5777777776543 4888888888887 333322 25566666666666542 456677777
Q ss_pred HHHHHHHHhc
Q 005232 601 VEALSMVITE 610 (707)
Q Consensus 601 ~eai~~vi~~ 610 (707)
++.+..+...
T Consensus 213 l~~l~~~~~~ 222 (526)
T PF01602_consen 213 LRLLRRYAPM 222 (526)
T ss_dssp HHHHTTSTSS
T ss_pred HHHHHhcccC
Confidence 7777765544
No 40
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.11 E-value=1.9 Score=44.77 Aligned_cols=170 Identities=9% Similarity=0.148 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcC------CCCccHH-HHHHHHHHHHhhhccCCCCCCCCcHhHHH
Q 005232 194 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL------HSEILSE-ASVNVISELIHYSAAGSSGGATVNMPLIQ 266 (707)
Q Consensus 194 ~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L------~~~~~~~-~a~~~l~~ii~~~~~~~~~~~~~~~~~~~ 266 (707)
+++.+|+-+..|+... +........+++.+++.+ +.|+..+ ....++..++.+..... .+.-...+.
T Consensus 43 iKkeIL~Li~t~i~~~---~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~---~~~v~~I~~ 116 (319)
T PF08767_consen 43 IKKEILKLIETFISKA---EDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI---QPQVPQILE 116 (319)
T ss_dssp HHHHHHHHHHHHHHT----S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC---CCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh---hhhHHHHHH
Confidence 5677888888888753 211112334444444322 2355554 46778888887654321 112233444
Q ss_pred HHHHhHhhhHHHhccC-CCCHHHHHHHHHHHHHHhhHHHHHHHcCC-cchHHHHHHHhhhcccCchhhhhhhHHHHHHHH
Q 005232 267 VIVPQIMSLKAHLTDS-SKDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSLQ 344 (707)
Q Consensus 267 ~l~~~v~~l~~~l~~~-~~d~~~~~~l~~l~~~l~e~~~~~i~~~~-~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~ 344 (707)
.++...+. .+.++ .+-+|....+.+++..+.+.+...+..-| +.+..+++.++....|++.+|++.++.....+.
T Consensus 117 ~vf~~Tl~---MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 117 AVFECTLP---MINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHHHH---HHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 55443322 22222 23357788899999999998877777643 457788899999999999999999999988887
Q ss_pred HHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHh
Q 005232 345 VILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSF 386 (707)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 386 (707)
+.+.+.+ .+.....|+.+|..++..++.
T Consensus 194 ~~~~~~~--------------~~~~~~F~~~y~~~il~~if~ 221 (319)
T PF08767_consen 194 NNVSKTN--------------PEFANQFYQQYYLDILQDIFS 221 (319)
T ss_dssp HHHHH-S--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 7665310 012344556666666655544
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.94 E-value=0.13 Score=44.41 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=63.5
Q ss_pred CCcchhhHHHHHHHHhhccCCccc-----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l-~~~l~ 538 (707)
.+|..++.+++++..++...++.. ...++.+++.+.. .++.++..++.++++++..-...+. .+. ..+++
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~g~l~ 94 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPEDNKL--IVLEAGGVP 94 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcHHHHH--HHHHCCChH
Confidence 458999999999999998754332 2456666666544 4789999999999998754322111 111 12455
Q ss_pred HHHhccCCCh-HHHHHHHHHHHHHHH
Q 005232 539 ILTSGMSTSE-DTAAAAALAFRHICD 563 (707)
Q Consensus 539 ~l~~~l~~~~-~v~~~Aa~al~~l~~ 563 (707)
.+.+.+.+++ .++..|+.+|.++|+
T Consensus 95 ~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 95 KLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 5555555432 488999999998874
No 42
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=93.65 E-value=0.97 Score=38.30 Aligned_cols=91 Identities=11% Similarity=0.158 Sum_probs=70.2
Q ss_pred HHHHHHHHHhccCCCh-----HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHH
Q 005232 533 LASVLSILTSGMSTSE-----DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (707)
Q Consensus 533 l~~~l~~l~~~l~~~~-----~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (707)
+-.+++.+...+++++ .-..++-.|+..+.+-+++++....++++..++..++. ++-+...+++-...
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~-------~eL~~~al~~W~~~ 81 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI-------PELRSLALRCWHVL 81 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------hhHHHHHHHHHHHH
Confidence 4455555555555543 24789999999999999999999999999999987764 34688899999999
Q ss_pred HhcCChHHHHHHHHHhhhhhHHH
Q 005232 608 ITELPQVDAKKALEMLCLPVVTP 630 (707)
Q Consensus 608 i~~~p~~~~~~~l~~l~~p~~~~ 630 (707)
+..+++++..+.+.+.+.-++..
T Consensus 82 i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 82 IKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHh
Confidence 99999877777777766655543
No 43
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=93.44 E-value=0.83 Score=38.88 Aligned_cols=92 Identities=9% Similarity=0.072 Sum_probs=70.4
Q ss_pred HHHHHHHHHhccCC-----ChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHH
Q 005232 533 LASVLSILTSGMST-----SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (707)
Q Consensus 533 l~~~l~~l~~~l~~-----~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (707)
+-.+++.+...+.+ |..-..+|-.++..+.+-+++++.+..++++..++..+.. ++-+...+++-...
T Consensus 9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~-------~~l~~~al~~W~~f 81 (107)
T PF08064_consen 9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI-------PELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-------hhhHHHHHHHHHHH
Confidence 34444544444433 2246789999999999999999999999999999988764 25678889999999
Q ss_pred HhcCChHHHHHHHHHhhhhhHHHH
Q 005232 608 ITELPQVDAKKALEMLCLPVVTPL 631 (707)
Q Consensus 608 i~~~p~~~~~~~l~~l~~p~~~~L 631 (707)
+..+++++..+.+.+.+..++..+
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhc
Confidence 999998888887777776665443
No 44
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.92 E-value=20 Score=40.76 Aligned_cols=59 Identities=27% Similarity=0.272 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhhHHHHhhC-----CCC--chhHHHHH-HHHHhccCCChHHHHHHHHHHHHHHHH
Q 005232 505 QPQLLQTVCLTIGAYSKWFDAA-----SSD--PSILASVL-SILTSGMSTSEDTAAAAALAFRHICDD 564 (707)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~-----p~~--~~~l~~~l-~~l~~~l~~~~~v~~~Aa~al~~l~~~ 564 (707)
.+.+..-+.|+||.|++.+-.. |.. ...+-.++ ..+.....+. .+..+|-.|+.++...
T Consensus 479 ~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~-~tk~yal~Al~KLSsr 545 (866)
T KOG1062|consen 479 QEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDS-TTKGYALTALLKLSSR 545 (866)
T ss_pred hhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHhh
Confidence 5667889999999999987753 111 11222222 2332333333 3788888899988754
No 45
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.79 E-value=0.069 Score=39.20 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=40.1
Q ss_pred cchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-CC-ChHHHHHHHHHHHHhh
Q 005232 467 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAY 519 (707)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~-~~~~l~~t~~~~ig~~ 519 (707)
|+-+++++++++.+++.......++++.++..|.. +. +++.||.++++.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 77789999999998877776655666776665543 32 4679999999999963
No 46
>PRK09687 putative lyase; Provisional
Probab=92.44 E-value=14 Score=37.63 Aligned_cols=137 Identities=9% Similarity=0.031 Sum_probs=75.2
Q ss_pred hcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 005232 439 VLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGA 518 (707)
Q Consensus 439 ~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~ 518 (707)
.+|.+.++..+...+. ..+-..+..+..+++.++..-.. ..+.++.+...+.+ .+.+.||..++..+|.
T Consensus 49 ~~~~~~~~~~l~~ll~---------~~d~~vR~~A~~aLg~lg~~~~~-~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 49 LRGGQDVFRLAIELCS---------SKNPIERDIGADILSQLGMAKRC-QDNVFNILNNLALE-DKSACVRASAINATGH 117 (280)
T ss_pred hcCcchHHHHHHHHHh---------CCCHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHhc-CCCHHHHHHHHHHHhc
Confidence 4565556555444322 23345566778888877653111 11234444433222 2368999999999998
Q ss_pred hHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhH
Q 005232 519 YSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDS 597 (707)
Q Consensus 519 ~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 597 (707)
.+. ..+. ..+.++..+...+.++. .|+..|+.||.++.. +..+..+..++.. -+.+.|
T Consensus 118 ~~~---~~~~---~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d-----~~~~VR 176 (280)
T PRK09687 118 RCK---KNPL---YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLLKD-----PNGDVR 176 (280)
T ss_pred ccc---cccc---cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcC-----CCHHHH
Confidence 642 1121 33455555555554432 388888888865421 1233444444443 235678
Q ss_pred HHHHHHHHHH
Q 005232 598 LHLVEALSMV 607 (707)
Q Consensus 598 ~~l~eai~~v 607 (707)
...+.++|.+
T Consensus 177 ~~A~~aLg~~ 186 (280)
T PRK09687 177 NWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcC
Confidence 8888888876
No 47
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.02 E-value=0.19 Score=31.82 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=23.4
Q ss_pred HHHHHHhccCCCh-HHHHHHHHHHHHHHHHh
Q 005232 536 VLSILTSGMSTSE-DTAAAAALAFRHICDDC 565 (707)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c 565 (707)
+++.+++++++|. .|+..|+.+|..|++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 3567777787774 59999999999998865
No 48
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.87 E-value=13 Score=38.38 Aligned_cols=188 Identities=11% Similarity=0.119 Sum_probs=105.0
Q ss_pred HHHHHHHhhccCCcc--ccccHHHHHhhc--CCCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccC-C
Q 005232 473 ALFCIRAISTYVSVV--EAEVMPQVMALL--PKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-T 546 (707)
Q Consensus 473 ~l~~l~~ia~~~~~~--~~~~l~~l~~~l--~~l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~-~ 546 (707)
||+..+.+-+.+... .+..+..+++.+ |.+. .++.+|..+++++|-|+-.=. . +-...+..+...+. +
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~-----~a~~~l~l~~~~~~~~ 76 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-E-----LAKEHLPLFLQALQKD 76 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-H-----HHHHHHHHHHHHHHhC
Confidence 344555555555522 123455666643 4554 478999999999999985322 1 23333333333332 2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhc---------CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc--CCh-H
Q 005232 547 SEDTAAAAALAFRHICDDCRKKLC---------GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE--LPQ-V 614 (707)
Q Consensus 547 ~~~v~~~Aa~al~~l~~~c~~~l~---------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~--~p~-~ 614 (707)
+..++..|..++..+...-+.... .....++..+...+.. -+.+.+.-+.||++.++-. +.+ +
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~a~EGl~KLlL~~~i~~~~ 151 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS-----ENPELQAIAVEGLCKLLLSGRISDPP 151 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhcCCCCcHH
Confidence 334888888888887765443222 1234577777777664 2467899999999998666 333 2
Q ss_pred H-HHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCccc--HHHHHHHHhHHHHHHHHhhcC
Q 005232 615 D-AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEA--VADAIQRLWPIFKAIFDIRAW 690 (707)
Q Consensus 615 ~-~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p--~~~~~~~~~p~l~~i~~~~~~ 690 (707)
+ ....+..+++|-.+ .-...-+.|+.+|......++ -..+.+...|++..+.+....
T Consensus 152 ~vL~~Lll~yF~p~t~-------------------~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~ 211 (298)
T PF12719_consen 152 KVLSRLLLLYFNPSTE-------------------DNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDE 211 (298)
T ss_pred HHHHHHHHHHcCcccC-------------------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCccc
Confidence 2 22333333333210 001234566666666543333 233445566777777766553
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=90.40 E-value=8.4 Score=42.95 Aligned_cols=131 Identities=14% Similarity=0.202 Sum_probs=82.0
Q ss_pred CcchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-CC-ChHHHHHHHHHHHHhhHHHHhhCCCC-chh--HHHHHHHH
Q 005232 466 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSD-PSI--LASVLSIL 540 (707)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~-~~~~l~~t~~~~ig~~~~~l~~~p~~-~~~--l~~~l~~l 540 (707)
+-..++.++.++..+-+...... ..+++.+.+.. +. ++|.||.-+++.|+++.. +++. .+. =..+++.+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~----~~~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIAR----HSEGAAQLLVDNELLPLI 124 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc----CCHHHHHHhcCccHHHHH
Confidence 34567888888888877765543 25555555443 32 479999999999998742 1211 001 13455566
Q ss_pred HhccCCCh-HHHHHHHHHHHHHHHHhh---hhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 541 TSGMSTSE-DTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 541 ~~~l~~~~-~v~~~Aa~al~~l~~~c~---~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
..++.+++ .+...|+.++.+++..-. ..+.+.. +..+..+... -+...|.++++.++.+.+.
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~---~~~L~~l~~~-----~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL---LSKLKSLMSQ-----SSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch---HHHHHHHHhc-----cCHHHHHHHHHHHHHHHhc
Confidence 66677764 589999999999985321 1112222 4555555543 2356799999999888665
No 50
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=89.92 E-value=5.4 Score=43.25 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhhhhhc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhH
Q 005232 551 AAAAALAFRHICDDCRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 628 (707)
Q Consensus 551 ~~~Aa~al~~l~~~c~~~l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~ 628 (707)
..+..+-+..+.+.....+. +++.+++..++.++.+ +.....-- +=+..++..+|.+...+++..++..++
T Consensus 176 iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s----k~~D~~gF---~LL~~iv~~~p~~~l~~yl~~I~~lll 248 (435)
T PF03378_consen 176 IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIAS----KANDHYGF---DLLESIVENLPPEALEPYLKQIFTLLL 248 (435)
T ss_dssp HHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-----TTCHHHHH---HHHHHHHHHS-HHHHGGGHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCC----CCcchHHH---HHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 35666677888888877776 7999999999999876 33333344 445555889998888889999999999
Q ss_pred HHHHH
Q 005232 629 TPLQE 633 (707)
Q Consensus 629 ~~L~~ 633 (707)
++|++
T Consensus 249 ~RLq~ 253 (435)
T PF03378_consen 249 TRLQS 253 (435)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88876
No 51
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.42 E-value=42 Score=37.90 Aligned_cols=219 Identities=15% Similarity=0.188 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhHHHHHhccchhhcccccc
Q 005232 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKI 160 (707)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~-~~~~~~~L~~L~~L~EE~~~~~~ 160 (707)
-|-.-++.+|.. .-++||.|-...+=-++++.+..-=| -++-+.+.+... |..+.....++-.| ....
T Consensus 144 DLa~Dv~tLL~s---skpYvRKkAIl~lykvFLkYPeAlr~---~FprL~EkLeDpDp~V~SAAV~VICEL---ArKn-- 212 (877)
T KOG1059|consen 144 DLADDVFTLLNS---SKPYVRKKAILLLYKVFLKYPEALRP---CFPRLVEKLEDPDPSVVSAAVSVICEL---ARKN-- 212 (877)
T ss_pred HHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhhHhHhh---hHHHHHHhccCCCchHHHHHHHHHHHH---HhhC--
Confidence 344445555554 45688888666665555554421112 356677776542 32233333332222 1100
Q ss_pred cCChHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCccHHHHH
Q 005232 161 AARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASV 240 (707)
Q Consensus 161 ~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~ 240 (707)
+ +....-+|..+.++.+.-+ +=+..+++|-|.+-..+-+++.. .|+..+.+.+.+-.--.--.
T Consensus 213 ---P-------knyL~LAP~ffkllttSsN-NWmLIKiiKLF~aLtplEPRLgK------KLieplt~li~sT~AmSLlY 275 (877)
T KOG1059|consen 213 ---P-------QNYLQLAPLFYKLLVTSSN-NWVLIKLLKLFAALTPLEPRLGK------KLIEPITELMESTVAMSLLY 275 (877)
T ss_pred ---C-------cccccccHHHHHHHhccCC-CeehHHHHHHHhhccccCchhhh------hhhhHHHHHHHhhHHHHHHH
Confidence 0 0011123444444443211 11566777777665554322211 23333333332211111223
Q ss_pred HHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHH-HHHHHHhhHHHHHHHcCCcchHHHHH
Q 005232 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIA-RLFADMGDSYVELIATGSDESMLIVH 319 (707)
Q Consensus 241 ~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~-~l~~~l~e~~~~~i~~~~~~~~~~~~ 319 (707)
+|+..++..... ....++...++..+..+- .-+.+.+.+ .+-+. -.+..++..|+.. +.+.-+
T Consensus 276 ECvNTVVa~s~s---~g~~d~~asiqLCvqKLr---~fiedsDqN---LKYlgLlam~KI~ktHp~~-------Vqa~kd 339 (877)
T KOG1059|consen 276 ECVNTVVAVSMS---SGMSDHSASIQLCVQKLR---IFIEDSDQN---LKYLGLLAMSKILKTHPKA-------VQAHKD 339 (877)
T ss_pred HHHHHheeehhc---cCCCCcHHHHHHHHHHHh---hhhhcCCcc---HHHHHHHHHHHHhhhCHHH-------HHHhHH
Confidence 455555544221 122245566654444321 111122222 22222 3344454445443 445678
Q ss_pred HHhhhcccCchhhhhhhHHHHHHHH
Q 005232 320 ALLEVASHPEYDIASMTFNFWHSLQ 344 (707)
Q Consensus 320 ~ll~~~~~~~~~v~~~~l~FW~~l~ 344 (707)
++++|.+..|..|.-.+++..|.+.
T Consensus 340 lIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 340 LILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHh
Confidence 8999999999999989988866554
No 52
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.28 E-value=8.5 Score=36.16 Aligned_cols=145 Identities=12% Similarity=0.134 Sum_probs=79.3
Q ss_pred HHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHH
Q 005232 473 ALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTA 551 (707)
Q Consensus 473 ~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~ 551 (707)
++-+++-++-..+.--+++++.+...|.. ++|.||++++.++..+- .++.- ..=+.++..++..+.++. +++
T Consensus 8 ~i~~l~DL~~r~~~~ve~~~~~l~~~L~D--~~~~VR~~al~~Ls~Li---~~d~i--k~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 8 AIIALGDLCIRYPNLVEPYLPNLYKCLRD--EDPLVRKTALLVLSHLI---LEDMI--KVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHCC--CCHHHHHHHHHHHHHHH---HcCce--eehhhhhHHHHHHHcCCCHHHH
Confidence 34455555544443334566677666553 37999999999998763 22221 122333344445555543 499
Q ss_pred HHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhh
Q 005232 552 AAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLP 626 (707)
Q Consensus 552 ~~Aa~al~~l~~~-c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p 626 (707)
..|...|..+... ....+.++++.++..+....+.+.....+.+.+..+++-+-.-++. +......+..++.-
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d~~~~~l~~kl~~~ 154 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--DKQKESLVEKLCQR 154 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHH
Confidence 9999999998877 4455555666555554432211100024556666666666444433 33333444444433
No 53
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.84 E-value=41 Score=36.92 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=69.4
Q ss_pred cHHHHHhhcCC-CC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh
Q 005232 491 VMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK 567 (707)
Q Consensus 491 ~l~~l~~~l~~-l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~ 567 (707)
++|.++..|.+ +. +++.||.-+=.+++.|-.=+++.|+.- -.+..++.+...++.++ .++..|-.=++.|......
T Consensus 205 yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 205 YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM-DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc
Confidence 45555554443 22 477888777778888877777888732 24567777777776654 3788888888999999999
Q ss_pred hhcCCHHHHHHHHHHHhhc
Q 005232 568 KLCGYLDGLYNVYRTAVNG 586 (707)
Q Consensus 568 ~l~~~~~~l~~~~~~~~~~ 586 (707)
.+.+|+..++..+...+..
T Consensus 284 ~~l~~~s~il~~iLpc~s~ 302 (675)
T KOG0212|consen 284 DLLLYLSGILTAILPCLSD 302 (675)
T ss_pred chhhhhhhhhhhcccCCCC
Confidence 9999999999888777654
No 54
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=88.74 E-value=3.2 Score=38.72 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=63.4
Q ss_pred HHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 533 LASVLSILTSGMSTSE-DTAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 533 l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~-c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
....|+.++.|+.+.+ ..+-.|..++..+.+. ....+.|.+++++.-+...+++ -+.+.....++++..++.+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t-----r~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT-----RDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHh
Confidence 3466777778886543 3677888889999988 7778999999999999999886 3467788888888777555
Q ss_pred CCh--HHHHHHHHHhhhh
Q 005232 611 LPQ--VDAKKALEMLCLP 626 (707)
Q Consensus 611 ~p~--~~~~~~l~~l~~p 626 (707)
.+- +...+++.+++.+
T Consensus 111 ~~~vG~aLvPyyrqLLp~ 128 (183)
T PF10274_consen 111 SDMVGEALVPYYRQLLPV 128 (183)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 321 2333555544333
No 55
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.39 E-value=8.8 Score=35.55 Aligned_cols=132 Identities=12% Similarity=0.131 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 005232 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAY 519 (707)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~ 519 (707)
.+..+...+.+.+. +.+...+-+++..+..+.+..+.+ ....+..++++|.+ +..+.+...++.+++.+
T Consensus 22 ~l~~l~~ri~~LL~-----s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 22 ALHKLVTRINSLLQ-----SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHhC-----CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34444444444432 233444557788888888776433 24567777777776 55678899999999999
Q ss_pred HHHHhhCCCCc-----hhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Q 005232 520 SKWFDAASSDP-----SILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (707)
Q Consensus 520 ~~~l~~~p~~~-----~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~ 583 (707)
-......|+.. ..++.+++.+++-++.+. ....+..++..+...-...+.||...+-..+...
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~-~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSS-CPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 98888888732 356677777766655434 5667777777777766666777777666655543
No 56
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.03 E-value=30 Score=34.51 Aligned_cols=134 Identities=14% Similarity=0.151 Sum_probs=82.1
Q ss_pred CCcchhhHHHHHHHHhhccCCcc----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l 540 (707)
.+.--.|.++++++..+..-... +..-++-+.+++.. | +|.++..++.++..++.--.+......+++.++.-+
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~-p-~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~ 102 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND-P-NPSVREKALNALNNLSVNDENQEQIKMYIPQVCEET 102 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC-C-ChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH
Confidence 44556788899988765432211 12334555555444 3 889999999999877654333322234666666655
Q ss_pred HhccCCChHHHHHHHHHHHHHHH--HhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 541 TSGMSTSEDTAAAAALAFRHICD--DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 541 ~~~l~~~~~v~~~Aa~al~~l~~--~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
..+--+.+ ++.++-.+|.+++- +....+.++++.++.. +..| +...+..+++.+..+...
T Consensus 103 ~s~~lns~-~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~L----L~~G-----~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 103 VSSPLNSE-VQLAGLRLLTNLTVTNDYHHMLANYIPDLLSL----LSSG-----SEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred hcCCCCCH-HHHHHHHHHHccCCCcchhhhHHhhHHHHHHH----HHcC-----ChHHHHHHHHHHHHhccC
Confidence 54322344 88888888888863 3344566777766543 3332 245678888888776655
No 57
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=18 Score=41.39 Aligned_cols=29 Identities=17% Similarity=0.404 Sum_probs=23.0
Q ss_pred HHhHHHHHHHHhhcCchhHHHHHHHHHhhhh
Q 005232 676 RLWPIFKAIFDIRAWDMRTMESLCRACKYAV 706 (707)
Q Consensus 676 ~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~~ 706 (707)
+..|+|..+++. .|...+|.+|-|+-+++
T Consensus 335 ealPlL~~lLs~--~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 335 EALPLLTPLLSY--QDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHHHHHHHHhh--ccchhHHHHHHHHHHHH
Confidence 348999998887 56688999999887654
No 58
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.62 E-value=34 Score=37.12 Aligned_cols=193 Identities=15% Similarity=0.188 Sum_probs=111.7
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHH
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQL 508 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l 508 (707)
....+..+....+.+..+.-+.+.+.........+....+.+|...|...++.-...+...+++..+++.+.+ +.....
T Consensus 210 ~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~-~~~g~~ 288 (415)
T PF12460_consen 210 ALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS-PELGQQ 288 (415)
T ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC-hhhHHH
Confidence 4455555555554344443333333333211112234566777777777777666555555667777776655 222222
Q ss_pred HHHHHHH-HHhhHHHHhh--CCCC-----chhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhh-hcCCHHHHHH
Q 005232 509 LQTVCLT-IGAYSKWFDA--ASSD-----PSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKK-LCGYLDGLYN 578 (707)
Q Consensus 509 ~~t~~~~-ig~~~~~l~~--~p~~-----~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~-l~~~~~~l~~ 578 (707)
...++.+ ++...+++.+ |... +++...+++.++++.+... .....--.|+..+.+..... +.++++.++.
T Consensus 289 aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlP 368 (415)
T PF12460_consen 289 AAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLP 368 (415)
T ss_pred HHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 2333332 3332344332 1111 2577788888888876543 24566677888888887664 5599999998
Q ss_pred HHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhH
Q 005232 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 628 (707)
Q Consensus 579 ~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~ 628 (707)
.+.+.+..+ +.+.+...++.+..++... ++-..+++..++.-++
T Consensus 369 LLlqsL~~~-----~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 369 LLLQSLSLP-----DADVLLSSLETLKMILEEA-PELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHhCCC-----CHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHH
Confidence 888877642 3456778888888888776 3444456666554443
No 59
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=86.86 E-value=25 Score=35.27 Aligned_cols=145 Identities=10% Similarity=0.106 Sum_probs=86.6
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Q 005232 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (707)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~ 583 (707)
..+.+|..++.+++..-.-+....-..+-...++.|+...+.+.. ....|..++..+. .+...-......+++.+.+-
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~ 88 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPALKGLLALV-KMKNFSPESAVKILRSLFQN 88 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHHHHHHHHHH-hCcCCChhhHHHHHHHHHHh
Confidence 367888888888776544444221111246677788888887766 5555677887777 33221122344455554432
Q ss_pred hhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhh
Q 005232 584 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (707)
Q Consensus 584 ~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 663 (707)
..- ......+|..+++-+-.+++.- ...+..+-...+..+-+.+.... .++.+...++.+..+.+.
T Consensus 89 ~~~---q~~~q~~R~~~~~ll~~l~~~~-----~~~l~~~~~~fv~~~i~~~~gEk------DPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 89 VDV---QSLPQSTRYAVYQLLDSLLENH-----REALQSMGDDFVYGFIQLIDGEK------DPRNLLLSFKLLKVILQE 154 (262)
T ss_pred CCh---hhhhHHHHHHHHHHHHHHHHHh-----HHHHHhchhHHHHHHHHHhccCC------CHHHHHHHHHHHHHHHHh
Confidence 221 1355778888888888777763 23445555666666666665432 456677777777766665
Q ss_pred c
Q 005232 664 V 664 (707)
Q Consensus 664 ~ 664 (707)
.
T Consensus 155 ~ 155 (262)
T PF14500_consen 155 F 155 (262)
T ss_pred c
Confidence 4
No 60
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=86.71 E-value=8.9 Score=38.95 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=92.6
Q ss_pred chhhHHHHHHHHhhccCCccc-----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc-hhHHHHHHHHH
Q 005232 468 RPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLSILT 541 (707)
Q Consensus 468 ~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~-~~l~~~l~~l~ 541 (707)
.-+|-++++++.|+..-+... ...+..++.++.+-..|..+.+++.++++.++. .++|.-. +.+..+++.|+
T Consensus 172 ~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR--GknP~P~w~~isqalpiL~ 249 (526)
T COG5064 172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR--GKNPPPDWSNISQALPILA 249 (526)
T ss_pred HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC--CCCCCCchHHHHHHHHHHH
Confidence 446888999999887654322 234556666665444588899999999999886 4555421 46778888887
Q ss_pred hcc--CCChHHHHHHHHHHHHHHHHhhhhhcCCHHH-HHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHH---
Q 005232 542 SGM--STSEDTAAAAALAFRHICDDCRKKLCGYLDG-LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD--- 615 (707)
Q Consensus 542 ~~l--~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~-l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~--- 615 (707)
+.+ .+++ +-.-|+.|+..+.+..-+.+.-.++. +...+.+++..+ +...+.-.+.++|.++..-....
T Consensus 250 KLiys~D~e-vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-----sa~iqtPalR~vGNIVTG~D~QTqvi 323 (526)
T COG5064 250 KLIYSRDPE-VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-----SAKIQTPALRSVGNIVTGSDDQTQVI 323 (526)
T ss_pred HHHhhcCHH-HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-----cccccCHHHHhhcCeeecCccceehh
Confidence 765 4556 88899999999986432222111110 112233333332 12235556677777766533211
Q ss_pred ----HHHHHHHhhhhhHHHHHH
Q 005232 616 ----AKKALEMLCLPVVTPLQE 633 (707)
Q Consensus 616 ----~~~~l~~l~~p~~~~L~~ 633 (707)
..+++.++++.--+++.+
T Consensus 324 I~~G~L~a~~~lLs~~ke~irK 345 (526)
T COG5064 324 INCGALKAFRSLLSSPKENIRK 345 (526)
T ss_pred eecccHHHHHHHhcChhhhhhh
Confidence 235555555555555544
No 61
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=86.32 E-value=66 Score=36.60 Aligned_cols=262 Identities=15% Similarity=0.219 Sum_probs=141.8
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhc---ChHHHHHH
Q 005232 372 VFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVL---GGDATLKI 448 (707)
Q Consensus 372 ~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l---~~~~~l~~ 448 (707)
..+|++.+++..++.+..-|+- ..|.. .+|++..++.++ |.++.+.+
T Consensus 792 r~kpylpqi~stiL~rLnnksa-------------~vRqq-----------------aadlis~la~Vlktc~ee~~m~~ 841 (1172)
T KOG0213|consen 792 RVKPYLPQICSTILWRLNNKSA-------------KVRQQ-----------------AADLISSLAKVLKTCGEEKLMGH 841 (1172)
T ss_pred ccccchHHHHHHHHHHhcCCCh-------------hHHHH-----------------HHHHHHHHHHHHHhccHHHHHHH
Confidence 4577888888888888766542 12444 778777766655 44567777
Q ss_pred HHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccc-----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHH
Q 005232 449 LYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWF 523 (707)
Q Consensus 449 l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l 523 (707)
+.-.|-+++ + ...-+-+=+.|-++.+|...+..+. +..+|.+..+|.+ .|-+|...++.++|+.++
T Consensus 842 lGvvLyEyl---g--eeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILkn--rheKVqen~IdLvg~Iad-- 912 (1172)
T KOG0213|consen 842 LGVVLYEYL---G--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKN--RHEKVQENCIDLVGTIAD-- 912 (1172)
T ss_pred hhHHHHHhc---C--cccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhh--hHHHHHHHHHHHHHHHHh--
Confidence 777777764 1 1223334455555555555543321 2223333332222 288999999999999874
Q ss_pred hhCCCC---chhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHH
Q 005232 524 DAASSD---PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 600 (707)
Q Consensus 524 ~~~p~~---~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l 600 (707)
+.|++ .+++.-++..+--.-.+.+..+++|..+|.-|++.- +|+ .++..+.+-+. ..+-+.++
T Consensus 913 -rgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI----GPq--dVLatLlnnLk-------vqeRq~Rv 978 (1172)
T KOG0213|consen 913 -RGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI----GPQ--DVLATLLNNLK-------VQERQNRV 978 (1172)
T ss_pred -cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc----CHH--HHHHHHHhcch-------HHHHHhch
Confidence 44543 146666666553222344458888888898887653 332 12222222111 12334444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHH
Q 005232 601 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPI 680 (707)
Q Consensus 601 ~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~ 680 (707)
..++|-.|-+ ..|.| +.-|-.++++..-. ...---..+..++.+|.++. +....++-.+.|+
T Consensus 979 cTtvaIaIVa-----------E~c~p-FtVLPalmneYrtP----e~nVQnGVLkalsf~Feyig--emskdYiyav~Pl 1040 (1172)
T KOG0213|consen 979 CTTVAIAIVA-----------ETCGP-FTVLPALMNEYRTP----EANVQNGVLKALSFMFEYIG--EMSKDYIYAVTPL 1040 (1172)
T ss_pred hhhhhhhhhh-----------hhcCc-hhhhHHHHhhccCc----hhHHHHhHHHHHHHHHHHHH--HHhhhHHHHhhHH
Confidence 4444322211 11222 11222233332110 01111246788888888873 3445677778888
Q ss_pred HHHHHHhhcCchhHHHHHHHHHhhhh
Q 005232 681 FKAIFDIRAWDMRTMESLCRACKYAV 706 (707)
Q Consensus 681 l~~i~~~~~~~~~v~e~~c~~~~~~~ 706 (707)
|+.-+.. .|...=+-.+.++||..
T Consensus 1041 leDAlmD--rD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1041 LEDALMD--RDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHhhcc--ccHHHHHHHHHHHHHHh
Confidence 8877654 34444455667777653
No 62
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.68 E-value=49 Score=39.59 Aligned_cols=153 Identities=13% Similarity=0.116 Sum_probs=85.3
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhc-CCCCCCcchhhHHHHHHHHhhccCCccccc---cHHHHHhhcCC-C-
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACC-GNKHNEWRPAEAALFCIRAISTYVSVVEAE---VMPQVMALLPK-L- 502 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~-~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~---~l~~l~~~l~~-l- 502 (707)
..+++..++...+. .....+...+.+.+... ..+...=+...++|+.++++.......+++ .+..++..|.. +
T Consensus 717 rl~~L~~L~~~~~~-e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 717 RLKCLKRLLKLLSA-EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHHHHHHHHhccH-HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc
Confidence 34455555555552 23344444444443222 111233456788999998766666555443 46666666643 2
Q ss_pred CChHHHHHHHHHHHHhhHHHHhhCCCC--chhHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhhh-hhcCCHHHHHH
Q 005232 503 PQQPQLLQTVCLTIGAYSKWFDAASSD--PSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRK-KLCGYLDGLYN 578 (707)
Q Consensus 503 ~~~~~l~~t~~~~ig~~~~~l~~~p~~--~~~l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~c~~-~l~~~~~~l~~ 578 (707)
...++++.+.+-.++ .-+.+...+ ..+++.+++.+...+... +.++.+|-..+..+|..-.. .+.||.+.|+.
T Consensus 796 gd~~~~~as~Ivai~---~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~ 872 (1176)
T KOG1248|consen 796 GDSTRVVASDIVAIT---HILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLP 872 (1176)
T ss_pred ccHHHHHHHHHHHHH---HHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHH
Confidence 223444333333322 222221111 137888888887777543 23777777777777766554 56699999998
Q ss_pred HHHHHhh
Q 005232 579 VYRTAVN 585 (707)
Q Consensus 579 ~~~~~~~ 585 (707)
.+..+..
T Consensus 873 sll~ls~ 879 (1176)
T KOG1248|consen 873 SLLALSH 879 (1176)
T ss_pred HHHHHHH
Confidence 8887654
No 63
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.95 E-value=18 Score=39.64 Aligned_cols=134 Identities=17% Similarity=0.210 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhh---hhc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 005232 547 SEDTAAAAALAFRHICDDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE 621 (707)
Q Consensus 547 ~~~v~~~Aa~al~~l~~~c~~---~l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~ 621 (707)
|. ++-.||.|+.+|+..... .+. .-++.|+.. +.. .+.+.++..+-|+|.++.--|. ...++.
T Consensus 124 ~~-lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L----l~s-----~~~~v~eQavWALgNIagds~~--~Rd~vl 191 (514)
T KOG0166|consen 124 PT-LQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL----LSS-----PSADVREQAVWALGNIAGDSPD--CRDYVL 191 (514)
T ss_pred hh-HHHHHHHHHHHHhcCchhhccccccCCchHHHHHH----hcC-----CcHHHHHHHHHHHhccccCChH--HHHHHH
Confidence 44 899999999999975443 222 223333333 332 3467799999999999888643 333332
Q ss_pred --HhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHH
Q 005232 622 --MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLC 699 (707)
Q Consensus 622 --~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c 699 (707)
..+.|++. .+....+ -.......=.++.+.|.-+ |+|-...++.+.|+|..++.+ .|.+|...+|
T Consensus 192 ~~g~l~pLl~----~l~~~~~------~~~lRn~tW~LsNlcrgk~-P~P~~~~v~~iLp~L~~ll~~--~D~~Vl~Da~ 258 (514)
T KOG0166|consen 192 SCGALDPLLR----LLNKSDK------LSMLRNATWTLSNLCRGKN-PSPPFDVVAPILPALLRLLHS--TDEEVLTDAC 258 (514)
T ss_pred hhcchHHHHH----Hhccccc------hHHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHhc--CCHHHHHHHH
Confidence 23344442 2222211 1122223456777777644 888889999999999999877 8899999999
Q ss_pred HHHhhh
Q 005232 700 RACKYA 705 (707)
Q Consensus 700 ~~~~~~ 705 (707)
-++++.
T Consensus 259 WAlsyL 264 (514)
T KOG0166|consen 259 WALSYL 264 (514)
T ss_pred HHHHHH
Confidence 888763
No 64
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=83.63 E-value=11 Score=30.21 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=57.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHH
Q 005232 8 KEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (707)
Q Consensus 8 ~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~L 87 (707)
...++.+-+++|+..|..|-..|.++. ++++-.....++. +.++.||..|+..|... . . ......|
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i-~-------~---~~~~~~L 67 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLK--DEDPMVRRAAARALGRI-G-------D---PEAIPAL 67 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHT--SSSHHHHHHHHHHHHCC-H-------H---HHTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHh-C-------C---HHHHHHH
Confidence 344555557889999999999999774 6777777788885 46789999999999853 1 1 1122333
Q ss_pred HHHHHHhcCCChHHHHHHHHHHH
Q 005232 88 NTLLKKFHKGPPKVRTQISIAVA 110 (707)
Q Consensus 88 l~~l~~~~~~~~~v~~qL~~ala 110 (707)
.+++.. .....|+.....+|+
T Consensus 68 ~~~l~~--~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQD--DDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHcC--CCcHHHHHHHHhhcC
Confidence 343333 234566776666654
No 65
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.53 E-value=27 Score=38.79 Aligned_cols=168 Identities=12% Similarity=0.145 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHhh
Q 005232 508 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDC-RKKLCGYLDGLYNVYRTAVN 585 (707)
Q Consensus 508 l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c-~~~l~~~~~~l~~~~~~~~~ 585 (707)
||..+++-|..+| ..+|+ +++.+...|.+.|...+ .-...+-.||..+...- ...| ..++..+...-+
T Consensus 75 iR~~aik~lp~~c---k~~~~---~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL----~~lf~~i~~~~~ 144 (556)
T PF05918_consen 75 IRKQAIKGLPQLC---KDNPE---HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL----TGLFSQIESSKS 144 (556)
T ss_dssp HHHHHHHHGGGG-----T--T----HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHH---H
T ss_pred HHHHHHHhHHHHH---HhHHH---HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHhccc
Confidence 5556655555554 33454 66666666666654332 13344444555444321 2222 112222111001
Q ss_pred ccCCCCCChhhHHHHHHHHHHHHhcCChHHHH--HHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhh
Q 005232 586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAK--KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (707)
Q Consensus 586 ~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~--~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 663 (707)
-+...|+++++-|..=+-.++.+.+. +-.+ .-+++.+.++++.- -...++.+-.++++
T Consensus 145 ------~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e---~~i~~~ikkvL~DV-----------TaeEF~l~m~lL~~ 204 (556)
T PF05918_consen 145 ------GDEQVRERALKFLREKLKPLKPELLTPQKEME---EFIVDEIKKVLQDV-----------TAEEFELFMSLLKS 204 (556)
T ss_dssp ------S-HHHHHHHHHHHHHHGGGS-TTTS---HHHH---HHHHHHHHHHCTT-------------HHHHHHHHHHHHT
T ss_pred ------CchHHHHHHHHHHHHHHhhCcHHHhhchHHHH---HHHHHHHHHHHHhc-----------cHHHHHHHHHHHHh
Confidence 12334666666665545544443322 1122 22333334444311 11356666666666
Q ss_pred cCC---cccHHHHHHHHhHHHHHHHH---hh-cCchhHHHHHHHHHhhhh
Q 005232 664 VNH---PEAVADAIQRLWPIFKAIFD---IR-AWDMRTMESLCRACKYAV 706 (707)
Q Consensus 664 ~~~---~~p~~~~~~~~~p~l~~i~~---~~-~~~~~v~e~~c~~~~~~~ 706 (707)
++. ..| ..-.+++.+++.+-.. .| .+|.+.++++..|+++|+
T Consensus 205 lk~~~~~~t-~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Al 253 (556)
T PF05918_consen 205 LKIYGGKQT-IEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQAL 253 (556)
T ss_dssp SGG---GSS-HHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHG
T ss_pred CccccccCC-hHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhh
Confidence 543 122 3445667777776552 23 368899999999999885
No 66
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=83.07 E-value=83 Score=35.03 Aligned_cols=124 Identities=16% Similarity=0.254 Sum_probs=75.4
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHH
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQL 508 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l 508 (707)
+.+++-.+...+||..++..+.+.|.-. .-+.+-..-.+++-+++.+.+- .++|.+++--- -| ...|
T Consensus 750 A~~tfG~Is~aiGPqdvL~~LlnnLkvq---------eRq~RvctsvaI~iVae~cgpf--sVlP~lm~dY~-TP-e~nV 816 (975)
T COG5181 750 ATETFGCISRAIGPQDVLDILLNNLKVQ---------ERQQRVCTSVAISIVAEYCGPF--SVLPTLMSDYE-TP-EANV 816 (975)
T ss_pred hhhhhhhHHhhcCHHHHHHHHHhcchHH---------HHHhhhhhhhhhhhhHhhcCch--hhHHHHHhccc-Cc-hhHH
Confidence 8889999999999998988887777532 1222334445677778877652 24566554221 12 3344
Q ss_pred HHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh
Q 005232 509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK 567 (707)
Q Consensus 509 ~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~ 567 (707)
..-.++...-+-+++.+.. ..|+-.+.+.+-.+|.+.. ..+.-|+.-++.++-.|..
T Consensus 817 QnGvLkam~fmFeyig~~s--~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 817 QNGVLKAMCFMFEYIGQAS--LDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHhHHHHHHHHHHHHHHHH--HHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 4444444433333333211 1367777788888886643 3677788888888877754
No 67
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=83.05 E-value=41 Score=31.50 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHH
Q 005232 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD 564 (707)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~ 564 (707)
||.+|.+++.++|.++ .++|. ++.+.++.+..+|.++. .|+..|...+.++...
T Consensus 1 ~~~vR~n~i~~l~DL~---~r~~~---~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLC---IRYPN---LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred CHHHHHHHHHHHHHHH---HhCcH---HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 6889999999998765 56675 88899999999998874 4889999899888754
No 68
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=81.73 E-value=7.4 Score=35.94 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh
Q 005232 506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (707)
Q Consensus 506 ~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~ 585 (707)
--+|+++..++...-+-...+- -+..+++.+..|+.+..++..-+..-+.+++..+...+.+.++.+...+...++
T Consensus 41 LelRK~ayE~lytlLd~~~~~~----~~~~~~~~v~~GL~D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRI----DISEFLDRVEAGLKDEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-----HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 4699999999987754222221 467778999999999768999999999999999999998889999998888886
Q ss_pred c
Q 005232 586 G 586 (707)
Q Consensus 586 ~ 586 (707)
.
T Consensus 117 ~ 117 (169)
T PF08623_consen 117 K 117 (169)
T ss_dssp -
T ss_pred c
Confidence 4
No 69
>PRK09687 putative lyase; Provisional
Probab=81.46 E-value=65 Score=32.74 Aligned_cols=92 Identities=16% Similarity=0.062 Sum_probs=58.7
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHH
Q 005232 10 ALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNT 89 (707)
Q Consensus 10 al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~ 89 (707)
.+..+ .++|..+|..|-..|.++. +++++..+..++.+ .++.+|.+|+..|-..-... .-..+....|+.
T Consensus 28 L~~~L-~d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~--~~~~~a~~~L~~---- 97 (280)
T PRK09687 28 LFRLL-DDHNSLKRISSIRVLQLRG-GQDVFRLAIELCSS--KNPIERDIGADILSQLGMAK--RCQDNVFNILNN---- 97 (280)
T ss_pred HHHHH-hCCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCc--cchHHHHHHHHH----
Confidence 34444 6779999999999998765 78888888888864 57799999999998743211 012223333332
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHH
Q 005232 90 LLKKFHKGPPKVRTQISIAVAALA 113 (707)
Q Consensus 90 ~l~~~~~~~~~v~~qL~~ala~l~ 113 (707)
++.+ .....||...+.+|+.+.
T Consensus 98 l~~~--D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 98 LALE--DKSACVRASAINATGHRC 119 (280)
T ss_pred HHhc--CCCHHHHHHHHHHHhccc
Confidence 2222 234566766666666653
No 70
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=81.09 E-value=22 Score=30.23 Aligned_cols=84 Identities=8% Similarity=0.070 Sum_probs=60.5
Q ss_pred hhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCc
Q 005232 568 KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHP 647 (707)
Q Consensus 568 ~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~ 647 (707)
.|.+|+-.+++.+.+.++.- ..+-+..++.+.+.|++.++.. ..+++......++.-|+..+..+.
T Consensus 4 fL~~~~Lgil~~f~~~l~d~-~~~~~~~ek~~~l~si~~lI~~-----~~~~i~~~~pQI~a~L~sal~~~~-------- 69 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDL-RGKKPIPEKKRALRSIEELIKL-----GGSHISSARPQIMACLQSALEIPE-------- 69 (107)
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHhCChh--------
Confidence 35567777888777776651 1145678999999999999994 467888888888888888776431
Q ss_pred hhhhHHHHHHHHHhhhcCC
Q 005232 648 RDLTVHIDRFAYIFRYVNH 666 (707)
Q Consensus 648 ~~~~~~i~~l~~~~~~~~~ 666 (707)
-....++....+++.++.
T Consensus 70 -l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 70 -LREEALSCWNCFIKTLDE 87 (107)
T ss_pred -hHHHHHHHHHHHHHHCCH
Confidence 122468888889888863
No 71
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.54 E-value=80 Score=35.86 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=57.9
Q ss_pred HHHHhhccCCccc-cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHH
Q 005232 476 CIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAA 553 (707)
Q Consensus 476 ~l~~ia~~~~~~~-~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~ 553 (707)
+++.++--++++- .+.-+.+|.++.. +.|.+|..++.++.+. | -++|+ -+.++++-|...|.+|. .|+++
T Consensus 129 AL~GLS~fvTpdLARDLa~Dv~tLL~s--skpYvRKkAIl~lykv--F-LkYPe---Alr~~FprL~EkLeDpDp~V~SA 200 (877)
T KOG1059|consen 129 ALSGLSCIVTPDLARDLADDVFTLLNS--SKPYVRKKAILLLYKV--F-LKYPE---ALRPCFPRLVEKLEDPDPSVVSA 200 (877)
T ss_pred eecccccccCchhhHHHHHHHHHHHhc--CchHHHHHHHHHHHHH--H-HhhhH---hHhhhHHHHHHhccCCCchHHHH
Confidence 3344444455552 3455777776654 2588999888887653 3 45576 79999999999998876 35555
Q ss_pred HHHHHHHHHHHhhh---hhcCCHHHHHHH
Q 005232 554 AALAFRHICDDCRK---KLCGYLDGLYNV 579 (707)
Q Consensus 554 Aa~al~~l~~~c~~---~l~~~~~~l~~~ 579 (707)
|. .-||+-.++ ...|..+.++..
T Consensus 201 AV---~VICELArKnPknyL~LAP~ffkl 226 (877)
T KOG1059|consen 201 AV---SVICELARKNPQNYLQLAPLFYKL 226 (877)
T ss_pred HH---HHHHHHHhhCCcccccccHHHHHH
Confidence 44 556666554 333444444433
No 72
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=79.87 E-value=5.5 Score=32.03 Aligned_cols=57 Identities=25% Similarity=0.177 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHH
Q 005232 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTL 64 (707)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L 64 (707)
.+...+..+..++|+..|.+|-..|.++. +++++.....++.+ +.+..+|..|+..|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~-~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQD-DDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC--SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcC-CCcHHHHHHHHhhc
Confidence 34455555557899999999999999986 68899999999976 45667898888776
No 73
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=78.98 E-value=31 Score=29.25 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=60.9
Q ss_pred hhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCc
Q 005232 568 KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHP 647 (707)
Q Consensus 568 ~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~ 647 (707)
.|.+|+-.+++.+.+.++... .+-+..++.+.+.|++.++.. ..+++.+....++.-|+..+..+.
T Consensus 4 fL~~~~LGil~~f~~~l~d~~-g~~~~~ek~~~i~ai~~lI~~-----~g~~i~~a~pQI~acL~saL~~~e-------- 69 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSS-GKKPYNEKKRALRSIGFLIKL-----MGKHISSALPQIMACLQSALEIPE-------- 69 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcc-cCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCchh--------
Confidence 345677778888888776532 234678899999999999996 467888888888888887776331
Q ss_pred hhhhHHHHHHHHHhhhcCC
Q 005232 648 RDLTVHIDRFAYIFRYVNH 666 (707)
Q Consensus 648 ~~~~~~i~~l~~~~~~~~~ 666 (707)
-....++....+++.++.
T Consensus 70 -L~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 70 -LRSLALRCWHVLIKTLKE 87 (107)
T ss_pred -HHHHHHHHHHHHHHhCCH
Confidence 122467888888888864
No 74
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=78.93 E-value=68 Score=32.83 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhh--hhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHh
Q 005232 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRK--KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (707)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~--~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (707)
..-.+|..|++++.++..++-+.-.++-.+|.+|+. .+.|.+..+=+.+.+- +++.+++..++.++..++.
T Consensus 104 l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew-------~~~vedqrel~r~v~~al~ 176 (378)
T KOG2753|consen 104 LRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEW-------NISVEDQRELLRAVHKALK 176 (378)
T ss_pred cHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHH
Confidence 566788888899988876888888899999999974 5667777776665543 5788999999999998887
Q ss_pred cCC
Q 005232 610 ELP 612 (707)
Q Consensus 610 ~~p 612 (707)
.-.
T Consensus 177 ~~k 179 (378)
T KOG2753|consen 177 DNK 179 (378)
T ss_pred hcc
Confidence 743
No 75
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.92 E-value=28 Score=35.89 Aligned_cols=182 Identities=23% Similarity=0.249 Sum_probs=93.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcC---------hhHHHHHHHHhhcCC------------------------
Q 005232 5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHT---------IDAWQVADNLLHDAT------------------------ 51 (707)
Q Consensus 5 ~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s---------~~aw~~~~~LL~~~~------------------------ 51 (707)
.++..++..+|.++++..+-||-..|...... .++.....+||++|.
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce
Confidence 45788899999999998888888877765432 222333455555431
Q ss_pred ----------------CChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHH
Q 005232 52 ----------------SNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQD-----SLNTLLKKFHKGPPKVRTQISIAVA 110 (707)
Q Consensus 52 ----------------~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~-----~Ll~~l~~~~~~~~~v~~qL~~ala 110 (707)
.+.+++-.|..||++.-... +..+..++. .+..++.. +|-.|+..++.++|
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-----e~n~~~i~esgAi~kl~eL~lD---~pvsvqseisac~a 401 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-----EHNVSVIRESGAIPKLIELLLD---GPVSVQSEISACIA 401 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-----hhhhHHHhhcCchHHHHHHHhc---CChhHHHHHHHHHH
Confidence 12335555555555543211 111222222 22333333 78889999999999
Q ss_pred HHHhhcccc-ccCCccchHHHHHhcCCCC-CchhHHHHHhccchhhcccccccCChHHHHHHHHHHHHhhHHHHHHHHHh
Q 005232 111 ALAVHISAE-DWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTAC 188 (707)
Q Consensus 111 ~l~~~~~~~-~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~ 188 (707)
.+++..... ..-+.++++-++....+.. +.....-.-|.-+.+.+ +...++++....-.+.+-.++...
T Consensus 402 ~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v---------~~YarviEawd~P~~gi~g~L~Rf 472 (550)
T KOG4224|consen 402 QLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV---------EHYARVIEAWDHPVQGIQGRLARF 472 (550)
T ss_pred HHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh---------HHHHHHHHHhcCcchhHHHHHHHH
Confidence 998866421 1222245666665554421 11112222333333322 223344444433334455555555
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 005232 189 LHINELKEQVLEAFASWL 206 (707)
Q Consensus 189 l~~~~~~~~~l~~l~sWi 206 (707)
+.+++ ..++.+..|.
T Consensus 473 l~S~~---~tf~hia~wT 487 (550)
T KOG4224|consen 473 LASHE---LTFRHIARWT 487 (550)
T ss_pred HhhhH---HHHHHHHHHH
Confidence 55443 3455555554
No 76
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.85 E-value=23 Score=38.68 Aligned_cols=118 Identities=10% Similarity=0.163 Sum_probs=71.8
Q ss_pred cchhhHHHHHHHHhhccCCc-cccccHHHHHhhcCC-C--CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh
Q 005232 467 WRPAEAALFCIRAISTYVSV-VEAEVMPQVMALLPK-L--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 542 (707)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~-~~~~~l~~l~~~l~~-l--~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~ 542 (707)
++.+-|+-+-+..+...+.. .+.+.+..+++.+.. + +.|.--|+..+--+...+--+. ++...|+..+++-++.
T Consensus 14 YekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg--~~~~~Y~~~iv~Pv~~ 91 (675)
T KOG0212|consen 14 YEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALG--IKDAGYLEKIVPPVLN 91 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhc--cccHHHHHHhhHHHHH
Confidence 34445555555555554433 344567777775432 1 2221111222111111111122 2222377777777777
Q ss_pred ccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhc
Q 005232 543 GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (707)
Q Consensus 543 ~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~ 586 (707)
+++++. .++.+||.++.+++.-|+..+.+|.+.+...+..+...
T Consensus 92 cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaD 136 (675)
T KOG0212|consen 92 CFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSAD 136 (675)
T ss_pred hccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcC
Confidence 888764 48999999999999999999999999999999888664
No 77
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=78.51 E-value=34 Score=33.36 Aligned_cols=130 Identities=14% Similarity=0.111 Sum_probs=80.8
Q ss_pred hHHHHHHHHhhccCCccccccHHHHHhhcCC-CC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH-HHHHHhccCCC
Q 005232 471 EAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASV-LSILTSGMSTS 547 (707)
Q Consensus 471 Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~-l~~l~~~l~~~ 547 (707)
-.++.++..++......-.+++..+++.|.. +. ....++.++..++..+..... +.+.+ +..+..+..+.
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-------~~~~~~~~~l~~~~~~K 143 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-------YSPKILLEILSQGLKSK 143 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--------H--HHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-------cHHHHHHHHHHHHHhCC
Confidence 4567777888877776644455555554432 22 357899999999888765433 23344 56666677665
Q ss_pred h-HHHHHHHHHHHHHHHHhh---hhhcCC--HHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCC
Q 005232 548 E-DTAAAAALAFRHICDDCR---KKLCGY--LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (707)
Q Consensus 548 ~-~v~~~Aa~al~~l~~~c~---~~l~~~--~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 612 (707)
. .++..++..+..+..... ..+... ++.+...+...++. -+.+.|...-+++..+.+..|
T Consensus 144 n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D-----~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 144 NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD-----ADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp -HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS-----S-HHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHCC
Confidence 3 488888888888887766 445432 46777777777664 347788888888887777765
No 78
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.25 E-value=1.9e+02 Score=36.12 Aligned_cols=189 Identities=11% Similarity=0.124 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHHhhccCCCC----CC--CCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHH
Q 005232 372 VFRSAYESLVSLVSFRVQYPQD----YQ--DLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDAT 445 (707)
Q Consensus 372 ~~~~~~~~ll~~l~~k~~~p~d----~~--~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~ 445 (707)
.++|++..|+..+++-.--=++ +- ..+..+.+.....|......+ + +.+++..|...+. ..+
T Consensus 1165 ~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akss--p---------mmeTi~~ci~~iD-~~v 1232 (1702)
T KOG0915|consen 1165 ELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSS--P---------MMETINKCINYID-ISV 1232 (1702)
T ss_pred hhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCC--c---------HHHHHHHHHHhhh-HHH
Confidence 6677777887777653211010 00 012234445555665422222 1 6778888888887 567
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhc-CCCC-ChHHHHHHHHHHHHhhHHHH
Q 005232 446 LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALL-PKLP-QQPQLLQTVCLTIGAYSKWF 523 (707)
Q Consensus 446 l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l-~~l~-~~~~l~~t~~~~ig~~~~~l 523 (707)
+..+...+.+.+..+ -.-..+=+|-..+..++..+..+..++-..++..+ +.+. -++.+++......|-+..+-
T Consensus 1233 Leelip~l~el~R~s----Vgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRGS----VGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHHHHHHHHhcc----CCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 777778777765422 12223345555666777777777777777777764 3343 36788888888877665543
Q ss_pred hhCCC-CchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Q 005232 524 DAASS-DPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYR 581 (707)
Q Consensus 524 ~~~p~-~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~ 581 (707)
. |+ ...++...+..++...+. ....++..+.+|.....+.|..|...++-.++
T Consensus 1309 s--~dq~qKLie~~l~~~l~k~es---~~siscatis~Ian~s~e~Lkn~asaILPLiF 1362 (1702)
T KOG0915|consen 1309 S--PDQMQKLIETLLADLLGKDES---LKSISCATISNIANYSQEMLKNYASAILPLIF 1362 (1702)
T ss_pred C--hHHHHHHHHHHHHHHhccCCC---ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHH
Confidence 3 32 112444444433332222 22455555555888888888888888887654
No 79
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=78.08 E-value=41 Score=39.13 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=54.5
Q ss_pred hHHHHHHHHhhccCCcc---ccccHHHHHhhcCCCC---C-h-HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh
Q 005232 471 EAALFCIRAISTYVSVV---EAEVMPQVMALLPKLP---Q-Q-PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 542 (707)
Q Consensus 471 Ea~l~~l~~ia~~~~~~---~~~~l~~l~~~l~~l~---~-~-~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~ 542 (707)
+.-+..++.+...+.+. .++.+..++..+..++ . + ..||.+++.+++.+.+++... ....+-+.++..+.+
T Consensus 924 ~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~-~l~~fr~~Vl~al~k 1002 (1030)
T KOG1967|consen 924 IVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK-SLLSFRPLVLRALIK 1002 (1030)
T ss_pred chhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc-ccccccHHHHHHhhh
Confidence 33344444444444433 2345666666665554 1 2 589999999999998876642 222378899999999
Q ss_pred ccCCCh-HHHHHHHH
Q 005232 543 GMSTSE-DTAAAAAL 556 (707)
Q Consensus 543 ~l~~~~-~v~~~Aa~ 556 (707)
.+++|+ .++..|+.
T Consensus 1003 ~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 1003 ILDDKKRLVRKEAVD 1017 (1030)
T ss_pred ccCcHHHHHHHHHHH
Confidence 999987 35544443
No 80
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=77.70 E-value=1.4e+02 Score=34.29 Aligned_cols=140 Identities=13% Similarity=0.110 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccc---c-----ccHHHHHh----hcCCCCChHHHHHHH
Q 005232 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE---A-----EVMPQVMA----LLPKLPQQPQLLQTV 512 (707)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~---~-----~~l~~l~~----~l~~l~~~~~l~~t~ 512 (707)
+.+.....+...+++.+..+..--+.--.+.+++++++++.... + .+..++.+ .+..++..-.+|.+.
T Consensus 638 ~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsav 717 (980)
T KOG2021|consen 638 ILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAV 717 (980)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHH
Confidence 44444444444333322212334445567888888888876542 1 11222222 333334334455555
Q ss_pred HHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhc
Q 005232 513 CLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (707)
Q Consensus 513 ~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~--~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~ 586 (707)
-.+++|.-.-+.. +...++|.++..+++.-.-.+ +.-.--..-+.++=.+|.+.+...+++++..+.+++..
T Consensus 718 rft~hRmI~~lg~--~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~r 791 (980)
T KOG2021|consen 718 RFTFHRMIPILGN--KVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIER 791 (980)
T ss_pred HHHHHHHHHhcch--hhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566666555543 222278888888766532222 23333333444444677777777888888888888774
No 81
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.26 E-value=36 Score=38.62 Aligned_cols=152 Identities=14% Similarity=0.212 Sum_probs=80.8
Q ss_pred hHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC
Q 005232 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD 393 (707)
Q Consensus 314 ~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d 393 (707)
+..++--+|.+.+.|+.++.+-|+++-..+...- . +.++++.+-....--.+
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr------------------------N----vediv~~Lkke~~kT~~ 366 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR------------------------N----VEDIVQFLKKEVMKTHN 366 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc------------------------c----HHHHHHHHHHHHHhccc
Confidence 4456666777888999999999999966655421 0 11222222221111111
Q ss_pred CCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHH
Q 005232 394 YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAA 473 (707)
Q Consensus 394 ~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~ 473 (707)
+|.++=..||+- ...++.+|+-.++ + +-..+.+.+.+.+. ..+-..--+.
T Consensus 367 ------~e~d~~~~yRql-----------------Liktih~cav~Fp-~-~aatvV~~ll~fis-----D~N~~aas~v 416 (948)
T KOG1058|consen 367 ------EESDDNGKYRQL-----------------LIKTIHACAVKFP-E-VAATVVSLLLDFIS-----DSNEAAASDV 416 (948)
T ss_pred ------cccccchHHHHH-----------------HHHHHHHHhhcCh-H-HHHHHHHHHHHHhc-----cCCHHHHHHH
Confidence 122333466766 7888888776666 3 22233344444431 1111111233
Q ss_pred HHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHh
Q 005232 474 LFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFD 524 (707)
Q Consensus 474 l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~ 524 (707)
|..++.+.+.++.-....+..+++.++++. .+.+...+++.+|.|++-..
T Consensus 417 l~FvrE~iek~p~Lr~~ii~~l~~~~~~ir-S~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 417 LMFVREAIEKFPNLRASIIEKLLETFPQIR-SSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHhhhhhc-ccccchhHHHHHHHHHhhhH
Confidence 334444444444333344555665555543 46778888999999987544
No 82
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.78 E-value=47 Score=36.49 Aligned_cols=154 Identities=14% Similarity=0.230 Sum_probs=90.4
Q ss_pred chhhHHHHHHHHhhccCCcccc-----ccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh
Q 005232 468 RPAEAALFCIRAISTYVSVVEA-----EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 542 (707)
Q Consensus 468 ~~~Ea~l~~l~~ia~~~~~~~~-----~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~ 542 (707)
.-.|=+.++++.|+...+.-.+ ..++.++..+.. +......+++.++++.++.--...|.. ..+..+|+.|..
T Consensus 167 ~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~-~~~~~~lRn~tW~LsNlcrgk~P~P~~-~~v~~iLp~L~~ 244 (514)
T KOG0166|consen 167 DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK-SDKLSMLRNATWTLSNLCRGKNPSPPF-DVVAPILPALLR 244 (514)
T ss_pred HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc-ccchHHHHHHHHHHHHHHcCCCCCCcH-HHHHHHHHHHHH
Confidence 3468899999999877654322 234444444332 112468889999999988643323321 467888888888
Q ss_pred ccCCCh-HHHHHHHHHHHHHHHHhhhhhc-----CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHH
Q 005232 543 GMSTSE-DTAAAAALAFRHICDDCRKKLC-----GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (707)
Q Consensus 543 ~l~~~~-~v~~~Aa~al~~l~~~c~~~l~-----~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 616 (707)
.+.+.. .+..-||.|+..+.+..-+.+. ...+.++.. +.. -+...+.-.+.++|.|+..- +++.
T Consensus 245 ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~l----L~~-----~~~~v~~PaLRaiGNIvtG~-d~QT 314 (514)
T KOG0166|consen 245 LLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDL----LGH-----SSPKVVTPALRAIGNIVTGS-DEQT 314 (514)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHH----HcC-----CCcccccHHHhhccceeecc-HHHH
Confidence 886653 4889999999999864433211 233333333 322 12234566788899866663 3333
Q ss_pred HHHHHHhhhhhHHHHHHHHh
Q 005232 617 KKALEMLCLPVVTPLQEIIN 636 (707)
Q Consensus 617 ~~~l~~l~~p~~~~L~~~~~ 636 (707)
...+.. ..+..|..++.
T Consensus 315 q~vi~~---~~L~~l~~ll~ 331 (514)
T KOG0166|consen 315 QVVINS---GALPVLSNLLS 331 (514)
T ss_pred HHHHhc---ChHHHHHHHhc
Confidence 333332 33334444444
No 83
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=73.76 E-value=1e+02 Score=31.67 Aligned_cols=139 Identities=14% Similarity=0.200 Sum_probs=81.8
Q ss_pred CCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHH-------HHhhCCCCchh
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK-------WFDAASSDPSI 532 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~-------~l~~~p~~~~~ 532 (707)
.+--.+||+ +++..|+.+-+.. +...+|.++++|.+- ...||..+.+.+|..+. ++-.. ..
T Consensus 128 ~~mlqfEAa-WalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~--~~~V~eQavWALGNiAGDS~~~RD~vL~~----ga 200 (526)
T COG5064 128 RDMLQFEAA-WALTNIASGTTQQTKVVVDAGAVPLFIQLLSST--EDDVREQAVWALGNIAGDSEGCRDYVLQC----GA 200 (526)
T ss_pred hhHHHHHHH-HHHhhhccCcccceEEEEeCCchHHHHHHHcCc--hHHHHHHHHHHhccccCCchhHHHHHHhc----Cc
Confidence 344556764 6888888776543 245688888887652 57899999999998642 22222 26
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhh-hcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcC
Q 005232 533 LASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKK-LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (707)
Q Consensus 533 l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~-l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (707)
+.++|+.+.+.-.|-. .-+-|...|.++|+.-... =-..+..-+..+..++.. .+.+......=|++++ +-.
T Consensus 201 leplL~ll~ss~~~is-mlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys-----~D~evlvDA~WAiSYl-sDg 273 (526)
T COG5064 201 LEPLLGLLLSSAIHIS-MLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS-----RDPEVLVDACWAISYL-SDG 273 (526)
T ss_pred hHHHHHHHHhccchHH-HHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHh-ccC
Confidence 8888888865444333 6677888899998743211 012233344444444432 3455555555555543 333
Q ss_pred ChHHHH
Q 005232 612 PQVDAK 617 (707)
Q Consensus 612 p~~~~~ 617 (707)
|.|.+.
T Consensus 274 ~~E~i~ 279 (526)
T COG5064 274 PNEKIQ 279 (526)
T ss_pred cHHHHH
Confidence 444433
No 84
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=71.91 E-value=38 Score=27.82 Aligned_cols=75 Identities=9% Similarity=0.141 Sum_probs=53.3
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005232 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEM 622 (707)
Q Consensus 544 l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ 622 (707)
+++|. .++.+|-..++++++... .-...++.++..+...+..+ ++......++|++.++...|.+-....++.
T Consensus 12 L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-----DsyVYL~aI~~L~~La~~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 12 LNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-----DSYVYLNAIKGLAALADRHPDEVLPILLDE 85 (92)
T ss_pred ccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 34542 389999999999998766 33356788888888877653 355688899999999999876544444444
Q ss_pred hh
Q 005232 623 LC 624 (707)
Q Consensus 623 l~ 624 (707)
+.
T Consensus 86 y~ 87 (92)
T PF10363_consen 86 YA 87 (92)
T ss_pred Hh
Confidence 43
No 85
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=71.84 E-value=3.3e+02 Score=35.89 Aligned_cols=208 Identities=13% Similarity=0.096 Sum_probs=116.4
Q ss_pred cchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCC-C--chhHHHHHH
Q 005232 467 WRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASS-D--PSILASVLS 538 (707)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~-~--~~~l~~~l~ 538 (707)
-...+.+++.++.++..-... +...+|.++++|.. .++.++..++++++..+..-.+... . ...+++++.
T Consensus 460 ~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s--~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~ 537 (2102)
T PLN03200 460 EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET--GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLW 537 (2102)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHH
Confidence 355678899999998754432 23567888887753 3689999999999998752111000 0 014555555
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 005232 539 ILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 618 (707)
Q Consensus 539 ~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~ 618 (707)
.+-.+ +++ .+..|+.++.+++........ .+ +..++.+ -+...+..+++++|++++..+.++...
T Consensus 538 LL~sg--d~~-~q~~Aa~AL~nLi~~~d~~~I---~~----Lv~LLls-----dd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 538 LLKNG--GPK-GQEIAAKTLTKLVRTADAATI---SQ----LTALLLG-----DLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHhCC--CHH-HHHHHHHHHHHHHhccchhHH---HH----HHHHhcC-----CChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 55433 344 889999999999765433211 22 2233433 235677888999999988776544221
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHH
Q 005232 619 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESL 698 (707)
Q Consensus 619 ~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~ 698 (707)
-. ....--+..|.++++..++ +........|+.++..- ...+..-+.....|.+-.++.. ++.++-...
T Consensus 603 ~g-~~~~ggL~~Lv~LL~sgs~-------~ikk~Aa~iLsnL~a~~-~d~~~avv~agaIpPLV~LLss--~~~~v~keA 671 (2102)
T PLN03200 603 EG-SAANDALRTLIQLLSSSKE-------ETQEKAASVLADIFSSR-QDLCESLATDEIINPCIKLLTN--NTEAVATQS 671 (2102)
T ss_pred Hh-hhccccHHHHHHHHcCCCH-------HHHHHHHHHHHHHhcCC-hHHHHHHHHcCCHHHHHHHHhc--CChHHHHHH
Confidence 11 1112355566666664421 12223445666666531 1112223344556666666654 444555555
Q ss_pred HHHH
Q 005232 699 CRAC 702 (707)
Q Consensus 699 c~~~ 702 (707)
|.++
T Consensus 672 A~AL 675 (2102)
T PLN03200 672 ARAL 675 (2102)
T ss_pred HHHH
Confidence 5444
No 86
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.47 E-value=2.1e+02 Score=33.46 Aligned_cols=150 Identities=11% Similarity=0.146 Sum_probs=88.2
Q ss_pred HHHHHHhhccCCccccccHHHHHhhcCC---CC---ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC
Q 005232 474 LFCIRAISTYVSVVEAEVMPQVMALLPK---LP---QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (707)
Q Consensus 474 l~~l~~ia~~~~~~~~~~l~~l~~~l~~---l~---~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 547 (707)
+-++.++++. ..+..+|.+.+.-.+ -+ ..-+|..+.++++-+.++.... |...+++.+++|+++|
T Consensus 789 I~gv~~Lcev---y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~------y~~~Li~tfl~gvrep 859 (982)
T KOG4653|consen 789 IRGVVSLCEV---YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK------YKAVLINTFLSGVREP 859 (982)
T ss_pred HHHHHHHHHh---cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHH------HHHHHHHHHHHhcCCc
Confidence 3333355555 233466766663221 11 1246776667776666665553 7778889999999988
Q ss_pred h-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhh
Q 005232 548 E-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLP 626 (707)
Q Consensus 548 ~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p 626 (707)
. ..+..+...+..+|+..+-.+..++-.....+..+....+ +.-.|...+.-+...+..+. .++.+.+..++-.
T Consensus 860 d~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~----s~~vRRaAv~li~~lL~~tg-~dlLpilr~~l~D 934 (982)
T KOG4653|consen 860 DHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDG----SVLVRRAAVHLLAELLNGTG-EDLLPILRLLLID 934 (982)
T ss_pred hHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCC----chhhHHHHHHHHHHHHhccc-hhhHHHHHHHHHH
Confidence 6 3577778889999987775555555555555555544322 23346666666666666654 3344444444444
Q ss_pred hHHHHHHHHhc
Q 005232 627 VVTPLQEIINQ 637 (707)
Q Consensus 627 ~~~~L~~~~~~ 637 (707)
....+.+.+..
T Consensus 935 l~~tl~~~vr~ 945 (982)
T KOG4653|consen 935 LDETLLSYVRQ 945 (982)
T ss_pred HHHHHHHHHhc
Confidence 45555555443
No 87
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=71.37 E-value=1.3e+02 Score=31.68 Aligned_cols=180 Identities=12% Similarity=0.101 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHH--HH
Q 005232 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDC-RKKLCGYLDGLYNVY--RT 582 (707)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c-~~~l~~~~~~l~~~~--~~ 582 (707)
+-.+-+..+|++| |++.|+ +-..+++.=+....+.. .++.+|.+.|-.||.+- -..+.+.+.++++.. ..
T Consensus 39 k~k~lasq~ip~~---fk~fp~---la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~~ 112 (460)
T KOG2213|consen 39 KEKRLASQFIPRF---FKHFPS---LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLTG 112 (460)
T ss_pred HHHHHHHHHHHHH---HhhCch---hhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHHH
Confidence 3344455666665 344454 55666665555555443 48899999999999871 111223333333211 11
Q ss_pred HhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhh
Q 005232 583 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (707)
Q Consensus 583 ~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 662 (707)
++.... ..+...|++.+.=|..=+-.++.+-..+-++ .-+++.+.+.+..-. .......++.|+.+ +
T Consensus 113 Lf~~~~--~~D~~irek~l~fi~tKl~~l~~e~L~kevE---~~iv~eikkal~dVt-------geef~lfm~~L~~l-k 179 (460)
T KOG2213|consen 113 LFGQIE--VGDEQIREKVLKFIRTKLITLKGEVLTKEVE---RHIVDEIKKALEDVT-------GEEFTLFMDILASL-K 179 (460)
T ss_pred HHhhhh--hhhHHHHHHHHHHHHHHhhcccHHHhhhHHH---HHHHHHHHHHHHhcc-------HHHHHHHHHHHHhh-h
Confidence 222111 1245567777777766666666654442222 223444444444321 12333444555543 2
Q ss_pred hcCCcccHHHHHHHHhHHHHHHHHh--hc-CchhHHHHHHHHHhhhh
Q 005232 663 YVNHPEAVADAIQRLWPIFKAIFDI--RA-WDMRTMESLCRACKYAV 706 (707)
Q Consensus 663 ~~~~~~p~~~~~~~~~p~l~~i~~~--~~-~~~~v~e~~c~~~~~~~ 706 (707)
+++.-.| -.=++++...++..-.. |. +|.++|+|+..|++-|+
T Consensus 180 ~~~~k~~-~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~Av 225 (460)
T KOG2213|consen 180 SLQTKAG-EARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAV 225 (460)
T ss_pred cccCCCC-HHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhh
Confidence 2221111 12233444444443332 33 57888898888888765
No 88
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=70.73 E-value=1.4e+02 Score=35.59 Aligned_cols=132 Identities=17% Similarity=0.116 Sum_probs=82.5
Q ss_pred chhhHHHHHHHHhhccCCccc-cccHHHHHhhcC--C-CCChHHHHHH----HHHHHHhhHHH-----------------
Q 005232 468 RPAEAALFCIRAISTYVSVVE-AEVMPQVMALLP--K-LPQQPQLLQT----VCLTIGAYSKW----------------- 522 (707)
Q Consensus 468 ~~~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~--~-l~~~~~l~~t----~~~~ig~~~~~----------------- 522 (707)
.-++|++|..-+++..-.+.+ ++++.++...|. . +....-+|++ .-+.+||.+++
T Consensus 443 ~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~ 522 (1133)
T KOG1943|consen 443 HVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTN 522 (1133)
T ss_pred chHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhh
Confidence 346899999999998876653 455666666432 1 2222222222 23356664433
Q ss_pred -----------HhhCCCCchhHHHHHHHHHhc-cCC-ChHHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHhhccC
Q 005232 523 -----------FDAASSDPSILASVLSILTSG-MST-SEDTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEG 588 (707)
Q Consensus 523 -----------l~~~p~~~~~l~~~l~~l~~~-l~~-~~~v~~~Aa~al~~l~~~c~~~l~-~~~~~l~~~~~~~~~~~~ 588 (707)
++.+|. |..++++-++.. +.| ...++-.||.|+.++...-.+.+. -++++++....
T Consensus 523 rsNcy~~l~~~ia~~~~---y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l------- 592 (1133)
T KOG1943|consen 523 RSNCYLDLCVSIAEFSG---YREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL------- 592 (1133)
T ss_pred hhhHHHHHhHHHHhhhh---HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc-------
Confidence 223332 666677655432 443 124889999999999988888777 56776665532
Q ss_pred CCCCChhhHHHHHHHHHHHHhcC
Q 005232 589 SLKVSAEDSLHLVEALSMVITEL 611 (707)
Q Consensus 589 ~~~l~~~~~~~l~eai~~vi~~~ 611 (707)
..+...+...+-|.|.|+.+.
T Consensus 593 --s~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 593 --SKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred --CCChHHhhhhHHHHHHHHHHh
Confidence 234667888888888888874
No 89
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.76 E-value=2.4e+02 Score=33.08 Aligned_cols=157 Identities=12% Similarity=0.208 Sum_probs=88.9
Q ss_pred CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh-ccC--CChHHHHHHHHHHHHHHHHhhh---hhcCCHHHH
Q 005232 503 PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS-GMS--TSEDTAAAAALAFRHICDDCRK---KLCGYLDGL 576 (707)
Q Consensus 503 ~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~-~l~--~~~~v~~~Aa~al~~l~~~c~~---~l~~~~~~l 576 (707)
|.+.....+++..+-.+++.+...-. ..++..+....+ .++ +|. +..-+...+...|.-..+ .|.|+++-+
T Consensus 478 p~s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~asik~S~~n~q-l~~Tss~~igs~s~~l~e~P~~ln~sl~~L 554 (982)
T KOG2022|consen 478 PDSLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSASIKLSAPNPQ-LLSTSSDLIGSLSNWLGEHPMYLNPSLPLL 554 (982)
T ss_pred chHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhccccccccCChh-HHHHHHHHHHHHHHHHhcCCcccCchHHHH
Confidence 44667788888899898888876432 367777766542 122 344 666677777776655544 344777777
Q ss_pred HHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHH
Q 005232 577 YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDR 656 (707)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~ 656 (707)
++.+.+- +.....+.++ +.+- ++.+..|.++..+++.-....+.... ....+.......
T Consensus 555 ~~~Lh~s-----------k~s~q~i~tl----~tlC-~~C~~~L~py~d~~~a~~~e~l~~~~-----~~~S~~~klm~s 613 (982)
T KOG2022|consen 555 FQGLHNS-----------KESEQAISTL----KTLC-ETCPESLDPYADQFSAVCYEVLNKSN-----AKDSDRLKLMKS 613 (982)
T ss_pred HHHhcCc-----------hHHHHHHHHH----HHHH-HhhhhhCchHHHHHHHHHHHHhcccc-----cCchHHHHHHHH
Confidence 7665421 1112222222 2221 23455666677777777777666422 123345566788
Q ss_pred HHHHhhhcCCcccHHHH-HHHHhHHHHHH
Q 005232 657 FAYIFRYVNHPEAVADA-IQRLWPIFKAI 684 (707)
Q Consensus 657 l~~~~~~~~~~~p~~~~-~~~~~p~l~~i 684 (707)
+|.+...+. |+-.... .+-+=|++.++
T Consensus 614 IGyvls~~~-pEe~~kyl~~lin~il~ql 641 (982)
T KOG2022|consen 614 IGYVLSRLK-PEEIPKYLMKLINPILSQL 641 (982)
T ss_pred HHHHHHhcc-HHhHHHHHHHHHHHHHHHH
Confidence 888888776 3333333 33344444443
No 90
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=68.67 E-value=2e+02 Score=32.11 Aligned_cols=188 Identities=18% Similarity=0.196 Sum_probs=106.2
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCc-----cccccHHHHHhhcCCCC
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV-----VEAEVMPQVMALLPKLP 503 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~-----~~~~~l~~l~~~l~~l~ 503 (707)
+.+++..|..-..++...+.+.+.+...+. ..+-.-++-++..++.+++.-.. .+.+.++.++..+..
T Consensus 58 ~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~-----h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-- 130 (503)
T PF10508_consen 58 ICDILKRLLSALSPDSLLPQYQPFLQRGLT-----HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-- 130 (503)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC--
Confidence 566777777666656566666666665542 23334556777777776554322 123456666655533
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH-----HHHHHhccCC-ChHHHHHHHHHHHHHHHHhhhhhcCCH-HHH
Q 005232 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASV-----LSILTSGMST-SEDTAAAAALAFRHICDDCRKKLCGYL-DGL 576 (707)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~-----l~~l~~~l~~-~~~v~~~Aa~al~~l~~~c~~~l~~~~-~~l 576 (707)
.+..|...++.++...+. ++. .+..+ +..+.+.+.. ...++-++...+-+++......+.-.. ..+
T Consensus 131 ~d~~Va~~A~~~L~~l~~----~~~---~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgl 203 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLAS----HPE---GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGL 203 (503)
T ss_pred CcHHHHHHHHHHHHHHhC----Cch---hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccH
Confidence 367889999999988764 332 23333 4455555555 233677777777777754433222110 124
Q ss_pred HHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCC
Q 005232 577 YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPE 640 (707)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~ 640 (707)
++.+...+.+. +.-.+..++|-++.+... +.-..++.+ .-++..|.+.+.....
T Consensus 204 l~~ll~eL~~d-----DiLvqlnalell~~La~~---~~g~~yL~~--~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 204 LDLLLKELDSD-----DILVQLNALELLSELAET---PHGLQYLEQ--QGIFDKLSNLLQDSEE 257 (503)
T ss_pred HHHHHHHhcCc-----cHHHHHHHHHHHHHHHcC---hhHHHHHHh--CCHHHHHHHHHhcccc
Confidence 44444443331 233477888888887773 223455554 3567777777765543
No 91
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=68.56 E-value=2e+02 Score=32.17 Aligned_cols=143 Identities=11% Similarity=0.116 Sum_probs=79.9
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCC--CChH
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL--PQQP 506 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l--~~~~ 506 (707)
.+-++.-++..+|.+++++.+ ...+ ++ -.+|+.+..++.++..|++-..-..-..+..+++.+..+ ..|.
T Consensus 301 t~ra~~vva~algv~~llpfl----~a~c---~S-rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~ 372 (975)
T COG5181 301 TGRAVGVVADALGVEELLPFL----EALC---GS-RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSR 372 (975)
T ss_pred HHHHHHHHHHhhCcHHHHHHH----HHHh---cC-ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccce
Confidence 444555556677866665543 2222 11 368999999999999999887655445666677766542 2356
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhh--------hhhcCCHHHHHH
Q 005232 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR--------KKLCGYLDGLYN 578 (707)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~--------~~l~~~~~~l~~ 578 (707)
.||-.+...++..++-.. |.+-..+..++.-|-.|.+. +-...|..|..... +....+....+.
T Consensus 373 ~vRi~tA~alS~lae~~~--Pygie~fd~vl~pLw~g~~~------hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~ 444 (975)
T COG5181 373 FVRIDTANALSYLAELVG--PYGIEQFDEVLCPLWEGASQ------HRGKELVSFLKAMGFIIPLMSPEYACHDTREHME 444 (975)
T ss_pred eeeehhHhHHHHHHHhcC--CcchHHHHHHHHHHHHHHHh------cCCchHHHHHHHhccccccCChHhhhhhHHHHHH
Confidence 677666666666555332 43223455555555555433 22333333333321 112223445667
Q ss_pred HHHHHhhcc
Q 005232 579 VYRTAVNGE 587 (707)
Q Consensus 579 ~~~~~~~~~ 587 (707)
.+...++++
T Consensus 445 iv~ref~sp 453 (975)
T COG5181 445 IVFREFKSP 453 (975)
T ss_pred HHHHHhCCc
Confidence 777776654
No 92
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.85 E-value=2.5e+02 Score=32.87 Aligned_cols=205 Identities=13% Similarity=0.143 Sum_probs=112.4
Q ss_pred cchhhHHHHHHHHhhccCCccc-----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCC---chhHHHHHH
Q 005232 467 WRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLS 538 (707)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~---~~~l~~~l~ 538 (707)
..-.--|+.|++-+.|.++... ...+|.+++.|..+. ..-|...++..+...+ ..||.. .--+..+|.
T Consensus 226 ~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie-yiDvAEQ~LqALE~iS---R~H~~AiL~AG~l~a~Ls 301 (1051)
T KOG0168|consen 226 FDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE-YIDVAEQSLQALEKIS---RRHPKAILQAGALSAVLS 301 (1051)
T ss_pred HHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh-hhHHHHHHHHHHHHHH---hhccHHHHhcccHHHHHH
Confidence 3334456777777778877653 235777877776664 4456666666655544 245531 013445555
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 005232 539 ILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 618 (707)
Q Consensus 539 ~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~ 618 (707)
|+ ..++. . +++.|-..-.+.|..-+..=..++-.-+-.+.++++.. +..-.+.+.-++++++..... -.+
T Consensus 302 yl-DFFSi-~-aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~-----D~k~ies~~ic~~ri~d~f~h--~~~ 371 (1051)
T KOG0168|consen 302 YL-DFFSI-H-AQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQ-----DKKPIESVCICLTRIADGFQH--GPD 371 (1051)
T ss_pred HH-HHHHH-H-HHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhc-----cchhHHHHHHHHHHHHHhccc--ChH
Confidence 54 22232 1 34444444445555544332234444445555555542 233455666677777776532 235
Q ss_pred HHHHhhhh-hHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHH-HHHHhHHHHHHHHhhcC
Q 005232 619 ALEMLCLP-VVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADA-IQRLWPIFKAIFDIRAW 690 (707)
Q Consensus 619 ~l~~l~~p-~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~-~~~~~p~l~~i~~~~~~ 690 (707)
.+++++++ ++++.++++.-.....++ .-++..|.+++.+-... |--.... ...|-.+++.++..|..
T Consensus 372 kLdql~s~dLi~~~~qLlsvt~t~Ls~---~~~~~vIrmls~msS~~--pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 372 KLDQLCSHDLITNIQQLLSVTPTILSN---GTYTGVIRMLSLMSSGS--PLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred HHHHHhchhHHHHHHHHHhcCcccccc---cchhHHHHHHHHHccCC--hHHHHHHHHhhHHHHHHHHHhccCc
Confidence 57777764 778888887755433332 23556677777764432 2222233 34577888888877653
No 93
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=66.71 E-value=1e+02 Score=32.44 Aligned_cols=141 Identities=14% Similarity=0.167 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-CC---C-hHHHHHHHHHHHHhhHHH
Q 005232 448 ILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP---Q-QPQLLQTVCLTIGAYSKW 522 (707)
Q Consensus 448 ~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~---~-~~~l~~t~~~~ig~~~~~ 522 (707)
..+..+.+.+. ..+-..++++|..++. ++.-..++|-++.++.. .. . +-.+....+.++.+
T Consensus 178 ~yf~~It~a~~-----~~~~~~r~~aL~sL~t-----D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~A---- 243 (343)
T cd08050 178 LYFEEITEALV-----GSNEEKRREALQSLRT-----DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRA---- 243 (343)
T ss_pred HHHHHHHHHHh-----CCCHHHHHHHHHHhcc-----CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHH----
Confidence 34455555543 1233445566655442 12234577888877653 21 1 23344444444443
Q ss_pred HhhCCCC------chhHHHHHHHHHhc-c-CCC---h--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCC
Q 005232 523 FDAASSD------PSILASVLSILTSG-M-STS---E--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGS 589 (707)
Q Consensus 523 l~~~p~~------~~~l~~~l~~l~~~-l-~~~---~--~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~ 589 (707)
+-.||.. .+++|.++..++.. + ..+ + .++..||..+..+|+.+...-..--+-++..+...+..+.
T Consensus 244 Ll~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~- 322 (343)
T cd08050 244 LLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPK- 322 (343)
T ss_pred HhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCC-
Confidence 4455553 24555555555421 1 112 1 4999999999999999887644444556656665554331
Q ss_pred CCCChhhHHHHHHHHH
Q 005232 590 LKVSAEDSLHLVEALS 605 (707)
Q Consensus 590 ~~l~~~~~~~l~eai~ 605 (707)
-+.......+.|++
T Consensus 323 --~~~~~~YGAi~GL~ 336 (343)
T cd08050 323 --KPLTTHYGAIVGLS 336 (343)
T ss_pred --CCcchhhHHHHHHH
Confidence 12223444554444
No 94
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.43 E-value=4e+02 Score=36.62 Aligned_cols=251 Identities=10% Similarity=0.058 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccc-----cccHHHHHhhcCCCCC---h---HHHHHHHH
Q 005232 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQ---Q---PQLLQTVC 513 (707)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~---~---~~l~~t~~ 513 (707)
++++++..+.+.+- ...|....+.+.++.++.+.++... ...+..++..+..++. . ...+....
T Consensus 1030 i~~~l~~k~~~lCy-----~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~ 1104 (3550)
T KOG0889|consen 1030 MFEYLLEKLCHLCY-----DSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILM 1104 (3550)
T ss_pred hHHHHHHHHHHHhc-----cHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHH
Confidence 44455555544431 4679999999999999998888321 1233444444444331 1 12333333
Q ss_pred HHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhcc----C
Q 005232 514 LTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE----G 588 (707)
Q Consensus 514 ~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~----~ 588 (707)
.++..+...+...-+.......++..++.++.+|. .|+..+-.++..+.+.. .+-+..++..+.+++..+ +
T Consensus 1105 ~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s----~~~v~~L~~p~K~~ll~p~f~k~ 1180 (3550)
T KOG0889|consen 1105 DILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELS----GKSVVKLLEPFKDVLLSPIFKKP 1180 (3550)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhccccccc
Confidence 34433333222111111367778888888888875 47777777777766655 344455555555554211 1
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCh----HHHHHHHHH----hhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHH
Q 005232 589 SLKVSAEDSLHLVEALSMVITELPQ----VDAKKALEM----LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 660 (707)
Q Consensus 589 ~~~l~~~~~~~l~eai~~vi~~~p~----~~~~~~l~~----l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 660 (707)
-..++...+...++|+...+.--|. ++..-.+.. +..-.-.....+................+..++.++..
T Consensus 1181 lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~ 1260 (3550)
T KOG0889|consen 1181 LRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAAC 1260 (3550)
T ss_pred cccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHH
Confidence 1135677889999999888887653 222222223 22222222222222221111111334455678888887
Q ss_pred hhhcCCcccH-HHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhhhh
Q 005232 661 FRYVNHPEAV-ADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAV 706 (707)
Q Consensus 661 ~~~~~~~~p~-~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~~ 706 (707)
.+......|. +.+..++.-++.+.+. +...+++|.+-.+.|+.+
T Consensus 1261 ~~~~d~~~~~~~~~r~kii~v~fk~l~--~~~~Ei~~~~~~~l~~v~ 1305 (3550)
T KOG0889|consen 1261 MKLSDFRTPQHAELREKIIAVFFKSLY--KRSSELIEVALEGLRKVL 1305 (3550)
T ss_pred HhcccccchhhhhhhhHHHHHHHHHHc--CChHHHHHHHHHHHHhhh
Confidence 7765432232 3445555555555443 356788888888887754
No 95
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=60.66 E-value=1.5e+02 Score=27.90 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=53.0
Q ss_pred CCCh-HHHHHHHHHHHHHHHHhhhhhc-------------CCHHH----HHHHHHH---HhhccCCCCCChhhHHHHHHH
Q 005232 545 STSE-DTAAAAALAFRHICDDCRKKLC-------------GYLDG----LYNVYRT---AVNGEGSLKVSAEDSLHLVEA 603 (707)
Q Consensus 545 ~~~~-~v~~~Aa~al~~l~~~c~~~l~-------------~~~~~----l~~~~~~---~~~~~~~~~l~~~~~~~l~ea 603 (707)
.||. .++..|+.++..+-+.++..|. |+... +++.... .++.+ -+......++++
T Consensus 50 ~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E----~~~~~l~q~lK~ 125 (182)
T PF13251_consen 50 KDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE----KSPPVLTQLLKC 125 (182)
T ss_pred cCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----cccHHHHHHHHH
Confidence 3443 4899999999888876543222 22222 2222222 22222 224467789999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhc
Q 005232 604 LSMVITELPQVDAKKALEMLCLPVVTPLQEIINQ 637 (707)
Q Consensus 604 i~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~ 637 (707)
++.++++.|.++... .++..++..+...+..
T Consensus 126 la~Lv~~tPY~rL~~---~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 126 LAVLVQATPYHRLPP---GLLTEVVTQVRPLLRH 156 (182)
T ss_pred HHHHHccCChhhcCH---hHHHHHHHHHHHHHhc
Confidence 999999999887763 5566666777777665
No 96
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=59.56 E-value=44 Score=28.18 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=59.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcC-h---------hHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCCh
Q 005232 8 KEALNALYHHPDDAVRMQADRWLQDFQHT-I---------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPS 77 (707)
Q Consensus 8 ~~al~~ly~~~d~~~r~~A~~~L~~~q~s-~---------~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~ 77 (707)
.+.+..+...+++..|..|=..|..+-.. + +++.....++.+ .+..++..|+.+|.+...... +
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~----~ 82 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPE----D 82 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcH----H
Confidence 33444444566788888888888777654 2 455556667764 467899999999999876432 1
Q ss_pred hhHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHH
Q 005232 78 EAVRGLQDSLNTLLKKF-HKGPPKVRTQISIAVAAL 112 (707)
Q Consensus 78 ~~~~~lr~~Ll~~l~~~-~~~~~~v~~qL~~ala~l 112 (707)
......+..++..+.+. ......++.+.+.++..+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 12222333344444332 123556777777776654
No 97
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=57.72 E-value=1.6e+02 Score=29.94 Aligned_cols=151 Identities=12% Similarity=0.128 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhh----c--CCHHHHHHHHHHHhhccCCCCCChhhHHHH----
Q 005232 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL----C--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHL---- 600 (707)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l----~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l---- 600 (707)
+++-+++.++.-+++.. .+...++..+..|.+.+.... . +..+.+.+.+.+.+.--++ ..+.++...+
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~-~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPP-ITPEDESLELLQAA 194 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCC-CCCchhhHHHHHHH
Confidence 45555555555556542 489999999999999876543 2 4455555666655431000 1122333333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHH
Q 005232 601 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPI 680 (707)
Q Consensus 601 ~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~ 680 (707)
+.++-.++.....+........+..-+.+.+-+.+.-.. .-...+-....++.+..+++.++. -++..++.+.|+
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~---~~~~~~l~~~ll~~l~~~i~~lGi--~~~~hL~rii~~ 269 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHES---SFSYPRLRTVLLQQLPPIIDELGI--SSVKHLQRIIPV 269 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceecc---ccCchhHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHH
Confidence 444444433322111112222222222221111111111 001233445677888888887753 357788999999
Q ss_pred HHHHHHhh
Q 005232 681 FKAIFDIR 688 (707)
Q Consensus 681 l~~i~~~~ 688 (707)
+.+++++.
T Consensus 270 l~~~l~np 277 (282)
T PF10521_consen 270 LSQILENP 277 (282)
T ss_pred HHHHhcCC
Confidence 99988763
No 98
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=54.10 E-value=1.1e+02 Score=31.19 Aligned_cols=105 Identities=12% Similarity=0.217 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCh---hHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhH
Q 005232 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTI---DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAV 80 (707)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~---~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~ 80 (707)
.+.|.++++.|-.-.........+.+|....++. ..|.+...|+..--...--.||- ..-...+. .........+
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl~~v~~e~~~-~~p~~~~~-~~~~~~~~~~ 79 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKLEKVIDEFFE-SAPEESGP-QNPNVEPEDY 79 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHh-cCccccCC-CCCCcchhhH
Confidence 3567788888865555567788899998888774 34777766665310111112220 00001111 1234445678
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 005232 81 RGLQDSLNTLLKKFHKGPPKVRTQISIAVAA 111 (707)
Q Consensus 81 ~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~ 111 (707)
..+|..++.++..|.. +++...+||..|..
T Consensus 80 ~~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~ 109 (288)
T PF09184_consen 80 EEMKERILELLDSFDE-PPFTIQRLCELLLD 109 (288)
T ss_pred HHHHHHHHHHHHhcCC-CChhHHHHHHHHhC
Confidence 8999999999999866 89999999998854
No 99
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.07 E-value=1e+02 Score=37.08 Aligned_cols=89 Identities=17% Similarity=0.282 Sum_probs=45.0
Q ss_pred hhhHHHHHHh---hcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCCh
Q 005232 429 VADVLIDAAS---VLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQ 505 (707)
Q Consensus 429 ~~d~l~~~~~---~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~ 505 (707)
..|++..+|. +.|+..++..+...+.+.+...+. .++..-.-||..+++.+.---.+-....+|-+|.++..-| .
T Consensus 897 ~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~-~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp-~ 974 (1251)
T KOG0414|consen 897 LADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGL-FSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSP-S 974 (1251)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCc-CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-C
Confidence 5566665553 356677888888888877754332 2332222355555443321111112234666666554333 4
Q ss_pred HHHHHHHHHHHHhh
Q 005232 506 PQLLQTVCLTIGAY 519 (707)
Q Consensus 506 ~~l~~t~~~~ig~~ 519 (707)
|++|..+.-.+|.+
T Consensus 975 p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 975 PRIRSNLVVALGDL 988 (1251)
T ss_pred ceeeecchheccch
Confidence 55555544444443
No 100
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=53.55 E-value=1.4e+02 Score=33.05 Aligned_cols=86 Identities=7% Similarity=0.068 Sum_probs=53.7
Q ss_pred hHHHHHHHHhhccCCcccc--ccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh
Q 005232 471 EAALFCIRAISTYVSVVEA--EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE 548 (707)
Q Consensus 471 Ea~l~~l~~ia~~~~~~~~--~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~ 548 (707)
+-++..++-+++..+.... .++..+.+.+. -.+..||.++..+++.|+-- .+++- .-.++.+.+-+++++..
T Consensus 466 ~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i--LEN~ivRsaAv~aLskf~ln-~~d~~---~~~sv~~~lkRclnD~D 539 (898)
T COG5240 466 QITVRILGILGREGPRAKTPGKYVRHIYNRLI--LENNIVRSAAVQALSKFALN-ISDVV---SPQSVENALKRCLNDQD 539 (898)
T ss_pred HHHHHHHHHhcccCCCCCCcchHHHHHHHHHH--HhhhHHHHHHHHHHHHhccC-ccccc---cHHHHHHHHHHHhhccc
Confidence 4455555556655554321 23333333211 12577999999999988632 23342 45677788888888764
Q ss_pred -HHHHHHHHHHHHHH
Q 005232 549 -DTAAAAALAFRHIC 562 (707)
Q Consensus 549 -~v~~~Aa~al~~l~ 562 (707)
.++.+|+.+++.+-
T Consensus 540 deVRdrAsf~l~~~~ 554 (898)
T COG5240 540 DEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHHhhh
Confidence 49999999988764
No 101
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.14 E-value=5e+02 Score=31.66 Aligned_cols=154 Identities=18% Similarity=0.283 Sum_probs=97.0
Q ss_pred hhHHHHHHHHhhccCCccccccHHHHHh-hcCCC-CChHHHHHH---HHHHHHhhHHH--HhhCCCCchhHHHHHHHHHh
Q 005232 470 AEAALFCIRAISTYVSVVEAEVMPQVMA-LLPKL-PQQPQLLQT---VCLTIGAYSKW--FDAASSDPSILASVLSILTS 542 (707)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~-~l~~l-~~~~~l~~t---~~~~ig~~~~~--l~~~p~~~~~l~~~l~~l~~ 542 (707)
.-..|-++..|-+..+.+...+++..+. ++..+ +.|..-|.+ ++..||+...+ ..++| ....+...+..+..
T Consensus 714 ~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Isa 792 (1176)
T KOG1248|consen 714 QASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIISA 792 (1176)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHHh
Confidence 3467888888988888544445554443 33332 234444444 45555532222 22334 11367788888887
Q ss_pred ccCCChH-HHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHH
Q 005232 543 GMSTSED-TAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL 620 (707)
Q Consensus 543 ~l~~~~~-v~~~Aa~al~~l~~~c~~~l~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l 620 (707)
|+-.... +....-.|+..+..+-...+. ++++.+++.+...+.+. +.+.+...+..+...+..+|.+...+++
T Consensus 793 gl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~-----sreI~kaAI~fikvlv~~~pe~~l~~~~ 867 (1176)
T KOG1248|consen 793 GLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN-----SREIAKAAIGFIKVLVYKFPEECLSPHL 867 (1176)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHcCCHHHHhhhH
Confidence 7654431 222224677777777777777 67888888777776642 4677888888888889999987777777
Q ss_pred HHhhhhhHH
Q 005232 621 EMLCLPVVT 629 (707)
Q Consensus 621 ~~l~~p~~~ 629 (707)
..++.-++.
T Consensus 868 ~~LL~sll~ 876 (1176)
T KOG1248|consen 868 EELLPSLLA 876 (1176)
T ss_pred HHHHHHHHH
Confidence 776666654
No 102
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.04 E-value=2.4e+02 Score=29.31 Aligned_cols=140 Identities=16% Similarity=0.220 Sum_probs=85.4
Q ss_pred CCCcchhhHHHHHHHHhhccCCcccc----ccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc------hhH
Q 005232 464 HNEWRPAEAALFCIRAISTYVSVVEA----EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SIL 533 (707)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~----~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~------~~l 533 (707)
..+-+++|.++.-+.-..+.+....+ ..+..++..+.+ .++-||..+.++||... .+||... ..+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~--~~~~lR~~Aa~Vigt~~---qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN--SDAELRELAARVIGTAV---QNNPKSQEQVIELGAL 168 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC--CcHHHHHHHHHHHHHHH---hcCHHHHHHHHHcccH
Confidence 46789999999999999998876532 234444443322 36899999999999864 7788521 133
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCC--HHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcC
Q 005232 534 ASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGY--LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (707)
Q Consensus 534 ~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~--~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (707)
..++..+. -+.|.+++..|-+|+..+..........+ +.. ++.+.++++.+ ..+..-+.+++.=++.+++..
T Consensus 169 ~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~---~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 169 SKLLKILS--SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSN---NTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHHHHc--cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcC---CcchHHHHHHHHHHHHHHHhh
Confidence 33333332 13344577888888888776543322111 111 23334444432 234556778888888888886
Q ss_pred ChH
Q 005232 612 PQV 614 (707)
Q Consensus 612 p~~ 614 (707)
+.+
T Consensus 243 ~s~ 245 (342)
T KOG2160|consen 243 KSD 245 (342)
T ss_pred hhh
Confidence 654
No 103
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=52.33 E-value=73 Score=38.40 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhc--CCHHHHHHHHH
Q 005232 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC--GYLDGLYNVYR 581 (707)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~--~~~~~l~~~~~ 581 (707)
.+++|.+.++-|.-.+-++.... .=+-+++++.+++.+++ -|...|-.+|.-+|+. .+. +++-.+++...
T Consensus 630 Dw~LR~aFfdsI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~---~ll~K~~v~~i~~~v~ 702 (1431)
T KOG1240|consen 630 DWRLRGAFFDSIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL---GLLRKPAVKDILQDVL 702 (1431)
T ss_pred cHHHHHHHHhhccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh---cccchHHHHHHHHhhh
Confidence 57888888888876666666442 34567788889998876 3666777777776653 222 56666666666
Q ss_pred HHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 005232 582 TAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (707)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~ 617 (707)
.++-.| +.-.|..++.=|..+...+...+..
T Consensus 703 PlL~hP-----N~WIR~~~~~iI~~~~~~ls~advy 733 (1431)
T KOG1240|consen 703 PLLCHP-----NLWIRRAVLGIIAAIARQLSAADVY 733 (1431)
T ss_pred hheeCc-----hHHHHHHHHHHHHHHHhhhhhhhhe
Confidence 665432 2445666666666666666655443
No 104
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=51.78 E-value=2.8e+02 Score=33.89 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHH
Q 005232 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHIC 562 (707)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~ 562 (707)
.+..+..++.++-.++.++...- -+..+++|++..+.++. +|+..|-.++-++.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~----~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L 490 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEV----KLDRVLPYFVHLLMDSEADVRATALETLTELL 490 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHH----HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 46678889999999998887643 79999999999998886 45555544444443
No 105
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=50.17 E-value=7.6e+02 Score=32.83 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=87.8
Q ss_pred CCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCch--hHHHHHHHHHh
Q 005232 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPS--ILASVLSILTS 542 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~--~l~~~l~~l~~ 542 (707)
.+++-.+.++.++..+...- +++.++.++.++.. ..+.+...+++.+|....-...+....+ .-...++.+.+
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~---d~~~I~~Lv~LLls--dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~ 616 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTA---DAATISQLTALLLG--DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ 616 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhcc---chhHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHH
Confidence 46788899999999887653 33456777766533 2466666677777776442222110000 00123444444
Q ss_pred ccCCCh-HHHHHHHHHHHHHHHHhhhh-----hcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHH
Q 005232 543 GMSTSE-DTAAAAALAFRHICDDCRKK-----LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (707)
Q Consensus 543 ~l~~~~-~v~~~Aa~al~~l~~~c~~~-----l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 616 (707)
-+.+++ .....|+.++.++|....+. ...-+++++..+.. -+.+.+.....+++++.+....++.
T Consensus 617 LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss---------~~~~v~keAA~AL~nL~~~~~~~q~ 687 (2102)
T PLN03200 617 LLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN---------NTEAVATQSARALAALSRSIKENRK 687 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc---------CChHHHHHHHHHHHHHHhCCCHHHH
Confidence 444432 48999999999999744331 12556666665542 1355678888888888876655443
Q ss_pred HHHHHH-hhhhhHHH
Q 005232 617 KKALEM-LCLPVVTP 630 (707)
Q Consensus 617 ~~~l~~-l~~p~~~~ 630 (707)
..++.. .+.|+++-
T Consensus 688 ~~~v~~GaV~pL~~L 702 (2102)
T PLN03200 688 VSYAAEDAIKPLIKL 702 (2102)
T ss_pred HHHHHcCCHHHHHHH
Confidence 333332 45554433
No 106
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=49.02 E-value=2.1e+02 Score=26.17 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHH------------------------------HHHHh
Q 005232 574 DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK------------------------------ALEML 623 (707)
Q Consensus 574 ~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~------------------------------~l~~l 623 (707)
+.|+..+.+++.++ -+.+-|..+++.+|. +.++.|-.-+. .=+-+
T Consensus 9 P~LL~~L~~iLk~e----~s~~iR~E~lr~lGi-lGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y 83 (160)
T PF11865_consen 9 PELLDILLNILKTE----QSQSIRREALRVLGI-LGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHHHhC----CCHHHHHHHHHHhhh-ccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHH
Confidence 56777777777764 346678888888874 55554322210 00111
Q ss_pred hhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcC
Q 005232 624 CLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAW 690 (707)
Q Consensus 624 ~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~ 690 (707)
..-.+..|-++++.+. ...+-...++.+-.+|++++ -.+.+++.++.|.+-.++++...
T Consensus 84 ~~vvi~~L~~iL~D~s------Ls~~h~~vv~ai~~If~~l~--~~cv~~L~~viP~~l~~i~~~~~ 142 (160)
T PF11865_consen 84 PTVVINALMRILRDPS------LSSHHTAVVQAIMYIFKSLG--LKCVPYLPQVIPIFLRVIRTCPD 142 (160)
T ss_pred HHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHhcC--cCchhHHHHHhHHHHHHHHhCCH
Confidence 2223333334443321 11222245666677776653 34689999999999999986433
No 107
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=48.56 E-value=25 Score=27.49 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHhhccCCcc----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHH
Q 005232 469 PAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK 521 (707)
Q Consensus 469 ~~Ea~l~~l~~ia~~~~~~----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~ 521 (707)
++-++|++++.++..-..- +.+.++.++++..+- +...+|.|+++++|-.+.
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s-~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENS-PVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhC-CccchHHHHHHHHHHHhC
Confidence 4679999999998763321 234555555544332 367899999999997653
No 108
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=48.48 E-value=77 Score=29.13 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=49.6
Q ss_pred HHHHHHHHHhccCCCh--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 533 LASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 533 l~~~l~~l~~~l~~~~--~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
..-+++.+.+-++++. .....+..|+..+++..+....||++.++..+...+.+ .+...++.++.-++.++..
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~-----~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT-----CPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh-----CCHHHHHHHHHHHHHHHHH
Confidence 3344566666666664 24557788888888765555679999999888887764 2345677777777766653
No 109
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=45.78 E-value=6e+02 Score=31.47 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChH-HH-HHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Q 005232 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TA-AAAALAFRHICDDCRKKLCGYLDGLYNVYR 581 (707)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~-v~-~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~ 581 (707)
.|+.+|+++..+||.+.+--.. ..+..+++-+...+..... ++ ..|-..+..+|......+.||..-++--+.
T Consensus 828 ~~~a~r~~~ar~i~~~~k~~~~-----e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pll 902 (1549)
T KOG0392|consen 828 IHIAVRYAAARCIGTMFKSATR-----ETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLL 902 (1549)
T ss_pred chHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhh
Confidence 4899999999999987653222 1455666655555544321 33 344456677777777788888887777666
Q ss_pred HHhhccCCCCCChhhHHHHHHHHHHHHhcCC
Q 005232 582 TAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (707)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 612 (707)
..... -....|...-++.+.++-.+|
T Consensus 903 r~msd-----~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 903 RRMSD-----QIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred ccccc-----chHHHHHHHHHHHHHHhcccc
Confidence 55442 123457778888888887765
No 110
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=44.58 E-value=3.1e+02 Score=27.36 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=56.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhcChhH--------HHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhH
Q 005232 9 EALNALYHHPDDAVRMQADRWLQDFQHTIDA--------WQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAV 80 (707)
Q Consensus 9 ~al~~ly~~~d~~~r~~A~~~L~~~q~s~~a--------w~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~ 80 (707)
..|..+.++|+++.|.+|-.-|..+--+.+. -++|..+... ..+.+++.-|...|.+.-. ..+.+
T Consensus 57 ~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~-~lns~~Q~agLrlL~nLtv------~~~~~ 129 (254)
T PF04826_consen 57 SLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSS-PLNSEVQLAGLRLLTNLTV------TNDYH 129 (254)
T ss_pred HHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHccCC------Ccchh
Confidence 3466666788899998888888866544322 2345555554 4566788888888887632 22223
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 005232 81 RGLQDSLNTLLKKFHKGPPKVRTQISIAVAAL 112 (707)
Q Consensus 81 ~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l 112 (707)
..+...+-..+.-...|+..++.+.-.+|.-+
T Consensus 130 ~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 130 HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 33333332222222336666666655555544
No 111
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.88 E-value=86 Score=32.54 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=45.0
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhh
Q 005232 492 MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR 566 (707)
Q Consensus 492 l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~ 566 (707)
+|.+++.++. .++.+++.++..||..+---....-..+.-|.+++.+++.++++. ++.-.|..|++.+..+.+
T Consensus 210 lpvLVsll~s--~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~ 283 (550)
T KOG4224|consen 210 LPVLVSLLKS--GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE 283 (550)
T ss_pred chhhhhhhcc--CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch
Confidence 4555554433 368888888888887653222111000123456666666676653 488999999999987643
No 112
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=41.94 E-value=43 Score=22.36 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=17.7
Q ss_pred HHHHHhccCCCh-HHHHHHHHHHHHHH
Q 005232 537 LSILTSGMSTSE-DTAAAAALAFRHIC 562 (707)
Q Consensus 537 l~~l~~~l~~~~-~v~~~Aa~al~~l~ 562 (707)
++.|++.+.+++ +++..|+.|+.++|
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 334444444442 59999999999987
No 113
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=41.41 E-value=79 Score=39.09 Aligned_cols=77 Identities=8% Similarity=0.210 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Q 005232 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 582 (707)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~ 582 (707)
++..||.++++++|+| +-.+|+ +.+.....+...+.++. .|+.+|-+-++.+|+.
T Consensus 867 ssasVREAaldLvGrf---vl~~~e---~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e------------------ 922 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRF---VLSIPE---LIFQYYDQIIERILDTGVSVRKRVIKILRDICEE------------------ 922 (1692)
T ss_pred chhHHHHHHHHHHhhh---hhccHH---HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh------------------
Q ss_pred HhhccCCCCCChhhHHHHHHHHHHHHhcCChHH
Q 005232 583 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVD 615 (707)
Q Consensus 583 ~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~ 615 (707)
..+-....+.++.++..+.+|+
T Consensus 923 -----------~pdf~~i~~~cakmlrRv~DEE 944 (1692)
T KOG1020|consen 923 -----------TPDFSKIVDMCAKMLRRVNDEE 944 (1692)
T ss_pred -----------CCChhhHHHHHHHHHHHhccch
No 114
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.35 E-value=68 Score=36.56 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Q 005232 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (707)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~ 583 (707)
+-.+|..+++++.++- .|+ ++++.++.+..++.|++ -|++.|..|+..|-.. ..+|.|..+.++..+...
T Consensus 112 NEyiRG~TLRFLckLk-----E~E---Llepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~ 182 (948)
T KOG1058|consen 112 NEYIRGSTLRFLCKLK-----EPE---LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLT 182 (948)
T ss_pred hHhhcchhhhhhhhcC-----cHH---HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHh
Confidence 4589999999998863 365 89999999999998876 4888999998888765 678999999988766543
No 115
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.89 E-value=2.3e+02 Score=32.70 Aligned_cols=116 Identities=11% Similarity=0.174 Sum_probs=74.3
Q ss_pred hhhHHHHHHhhcCh--HHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCcc--ccccHHHHHhhcCCCCC
Q 005232 429 VADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLPKLPQ 504 (707)
Q Consensus 429 ~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~--~~~~l~~l~~~l~~l~~ 504 (707)
+.|++.++..-... +..+.++...+. +.+..+-+.+.++-++...+.. .+.++..+.+.+- + .
T Consensus 412 ivd~Ii~iie~~pdsKe~~L~~LCefIE-----------Dce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi-L-E 478 (865)
T KOG1078|consen 412 IVDAIIDIIEENPDSKERGLEHLCEFIE-----------DCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI-L-E 478 (865)
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHH-----------hccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh-h-h
Confidence 66776665543321 234444444443 2334456677777777766643 2344544444211 1 3
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHH
Q 005232 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICD 563 (707)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~ 563 (707)
+..+|.++..++.+|+ ...+. ..+++...+.+++.++. .++.+|..+++.+-+
T Consensus 479 n~ivRaaAv~alaKfg---~~~~~---l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFG---AQDVV---LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhHHHHHHHHHHHh---cCCCC---ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 6889999999998887 55665 78889999999987764 489999999888764
No 116
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=39.72 E-value=5.7e+02 Score=30.32 Aligned_cols=139 Identities=12% Similarity=0.112 Sum_probs=73.8
Q ss_pred cccHHHHHhhcCCCC--ChHHHHHHHHHHHHhhHH----HHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 005232 489 AEVMPQVMALLPKLP--QQPQLLQTVCLTIGAYSK----WFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHIC 562 (707)
Q Consensus 489 ~~~l~~l~~~l~~l~--~~~~l~~t~~~~ig~~~~----~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~ 562 (707)
.+..|.++..|.++. ....+....+++++.... +-....+ ...|..++.+.+.-++|- +...+-..|+.+|
T Consensus 525 ~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~s--kI~P~~i~lF~k~s~DP~-V~~~~qd~f~el~ 601 (1005)
T KOG2274|consen 525 LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMES--KICPLTINLFLKYSEDPQ-VASLAQDLFEELL 601 (1005)
T ss_pred cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhc--chhHHHHHHHHHhcCCch-HHHHHHHHHHHHH
Confidence 456777777665542 123444444444444332 2222221 477777777777777786 8888888899988
Q ss_pred HH--hhhhhc-CCHHHHHHH-------------------HHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHH-H---
Q 005232 563 DD--CRKKLC-GYLDGLYNV-------------------YRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD-A--- 616 (707)
Q Consensus 563 ~~--c~~~l~-~~~~~l~~~-------------------~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~-~--- 616 (707)
+. |...+. -.++++++. +..++.++ +..++..-..+++.+++.++---.+.+ +
T Consensus 602 q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t-p~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~ 680 (1005)
T KOG2274|consen 602 QIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT-PSPLPNLLICYAFPAVAKITLHSDDHETLQNA 680 (1005)
T ss_pred HHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC-CCCccHHHHHHHhHHhHhheeecCChHHHHhH
Confidence 63 332222 122222222 22222222 123666677777778777764433322 2
Q ss_pred HHHHHHhhhhhHHHH
Q 005232 617 KKALEMLCLPVVTPL 631 (707)
Q Consensus 617 ~~~l~~l~~p~~~~L 631 (707)
.+.+..+++--.+.+
T Consensus 681 ~EcLra~Is~~~eq~ 695 (1005)
T KOG2274|consen 681 TECLRALISVTLEQL 695 (1005)
T ss_pred HHHHHHHHhcCHHHH
Confidence 255666555544433
No 117
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=39.63 E-value=3.3e+02 Score=25.63 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=54.8
Q ss_pred cccHHHHHhhcCCCC-ChHHH-HHHHHHHHHhhHHHHhhCCC-CchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHH--
Q 005232 489 AEVMPQVMALLPKLP-QQPQL-LQTVCLTIGAYSKWFDAASS-DPSILASVLSILTSGMSTSE-DTAAAAALAFRHIC-- 562 (707)
Q Consensus 489 ~~~l~~l~~~l~~l~-~~~~l-~~t~~~~ig~~~~~l~~~p~-~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~-- 562 (707)
+.++|-+++-+.... +...+ +..+-+++-+ . .++ ....+|+++.-+-+++++.+ ++...+-.+++.++
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~-----~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLER-G-----GGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHh-c-----chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 457888888776542 12233 3333344443 1 111 11266667766667776432 38889999999994
Q ss_pred -HHhhhhhcCCHHHHHHHHHH
Q 005232 563 -DDCRKKLCGYLDGLYNVYRT 582 (707)
Q Consensus 563 -~~c~~~l~~~~~~l~~~~~~ 582 (707)
....+.|.||..+++..+.-
T Consensus 111 ~~~vG~aLvPyyrqLLp~ln~ 131 (183)
T PF10274_consen 111 SDMVGEALVPYYRQLLPVLNL 131 (183)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 45567899999888877653
No 118
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=39.52 E-value=2e+02 Score=29.57 Aligned_cols=34 Identities=12% Similarity=0.358 Sum_probs=19.9
Q ss_pred CChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 005232 592 VSAEDSLHLVEALSMVITELPQVDAKKALEMLCL 625 (707)
Q Consensus 592 l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~ 625 (707)
.+..+-..++..|++++...|+|+..+.+.+++.
T Consensus 58 ~~ekdle~vlnsi~sLi~~~~~e~~e~~v~a~~e 91 (378)
T KOG2753|consen 58 IPEKDLECVLNSIVSLIKNAPPEKVEEMVKAICE 91 (378)
T ss_pred CCcchHHHHHHHHHHHHHhCCHHHhHHHHHHHHH
Confidence 3444566666666666666666665555555443
No 119
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=39.04 E-value=5.5e+02 Score=27.99 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhhh-hhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhH
Q 005232 550 TAAAAALAFRHICDDCRK-KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 628 (707)
Q Consensus 550 v~~~Aa~al~~l~~~c~~-~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~ 628 (707)
....+-+-+.++|++... .|.+.++.+.-.+.+..++ .+...|..++-++..++..+..+++.+++.+|-.--+
T Consensus 422 ~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S-----~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~ 496 (516)
T KOG2956|consen 422 RAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS-----TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKL 496 (516)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC-----chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHH
Confidence 355666688899987754 5556666666665555543 4577899999999999999988888899998877777
Q ss_pred HHHHHHHhcC
Q 005232 629 TPLQEIINQG 638 (707)
Q Consensus 629 ~~L~~~~~~~ 638 (707)
.-++-+++..
T Consensus 497 ~LlqlYinRa 506 (516)
T KOG2956|consen 497 NLLQLYINRA 506 (516)
T ss_pred HHHHHHHHHh
Confidence 6666666544
No 120
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=38.70 E-value=3.9e+02 Score=27.56 Aligned_cols=93 Identities=9% Similarity=0.169 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhc----------CCHHHHHHHHHH--HhhccCCCCC--ChhhH
Q 005232 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLC----------GYLDGLYNVYRT--AVNGEGSLKV--SAEDS 597 (707)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~----------~~~~~l~~~~~~--~~~~~~~~~l--~~~~~ 597 (707)
+..++.+.|++..+..+ +...+++++..+|. ++..+. .-+.+++..+.. +-...+...+ ++.--
T Consensus 2 ~y~~l~~ll~~s~~~~p-~~~s~~~~l~~v~~-~~~elA~~Lv~if~~~~~~~~~l~~l~~~Ev~~~~~~~tLFRgNSla 79 (310)
T cd05134 2 YYSPLRDLLLKSADVEP-VSASAAHILGEVCR-EKQEAAIPLVRLFLHYGKIVPFISAIASAEVNRTQDPNTIFRGNSLT 79 (310)
T ss_pred ccHHHHHHHHhCcccCC-cchhHHHHHHHhCc-cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCcchhhhcCcHH
Confidence 44566777776654434 56778888888886 222222 112222221111 1111110011 23334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHH
Q 005232 598 LHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQE 633 (707)
Q Consensus 598 ~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~ 633 (707)
.++|+..+.... .+||...+.|++.++-.
T Consensus 80 TK~m~~y~k~~G-------~~YL~~tL~pvI~~i~~ 108 (310)
T cd05134 80 SKCIDETMKLAG-------MHYLQVTLKPIIDEICQ 108 (310)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHc
Confidence 455555544333 48999999999977654
No 121
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=38.32 E-value=4.5e+02 Score=27.63 Aligned_cols=101 Identities=13% Similarity=0.138 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCcccc----ccHHHHHhhcC-----CCC---ChHHHHH
Q 005232 443 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA----EVMPQVMALLP-----KLP---QQPQLLQ 510 (707)
Q Consensus 443 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~----~~l~~l~~~l~-----~l~---~~~~l~~ 510 (707)
..+++++...+.+...... ..++..+...+..+.++..+-.-.-. .++|.++..+. ..| .|..+|.
T Consensus 209 ~~LlPyf~~fI~~~v~~n~--~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd 286 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNL--DQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRD 286 (343)
T ss_pred hhhhhHHHHHHHHHHHhhh--cccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHH
Confidence 4466666666655543211 11576677777777777665333323 34555555442 222 4789999
Q ss_pred HHHHHHHhhHHHHhh-CCCCchhHHHHHHHHHhccCCCh
Q 005232 511 TVCLTIGAYSKWFDA-ASSDPSILASVLSILTSGMSTSE 548 (707)
Q Consensus 511 t~~~~ig~~~~~l~~-~p~~~~~l~~~l~~l~~~l~~~~ 548 (707)
-+..+++..+.-+.. +|. +.+.++..+.+.+.+|.
T Consensus 287 ~AA~ll~~i~~~f~~~y~~---l~~ri~~tl~k~l~d~~ 322 (343)
T cd08050 287 YAARLLAQICRKFSTSYNT---LQPRITRTLLKALLDPK 322 (343)
T ss_pred HHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHHcCCC
Confidence 999999999876654 343 77888888887776654
No 122
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=37.02 E-value=4e+02 Score=25.88 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=40.2
Q ss_pred hhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 005232 566 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCL 625 (707)
Q Consensus 566 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~ 625 (707)
++.+..|++-++..+-....++ .++.+.+..+..|+=.++..++..+ ...+...++
T Consensus 146 k~~~~kh~~~lL~~Yi~~~~~~---~l~~~vr~~L~pGiy~l~d~~s~~e-~~~l~a~Ld 201 (223)
T PF10441_consen 146 KKSLRKHAPYLLANYISLQLKY---TLPPEVREALMPGIYALFDVCSQHE-LQQLNASLD 201 (223)
T ss_pred HHHHHhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHcC
Confidence 4566678888876666655443 4889999999999999999998766 344444333
No 123
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=36.78 E-value=1.1e+02 Score=35.90 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
.++.+++.++++++-|. .++..+-..|.-+.......+..|++.++..+..+-...+ ..+-..|+..+++++.+...
T Consensus 906 ~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~--n~~~~VR~~ALqcL~aL~~~ 983 (1030)
T KOG1967|consen 906 QFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDND--NNMMVVREDALQCLNALTRR 983 (1030)
T ss_pred chhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCC--cchhHHHHHHHHHHHHHhcc
Confidence 67888999999987765 3777888888888888777777899999988887644321 22355789999999999998
Q ss_pred CChHHHHHHHHHhhhhhHHHHHHHHh
Q 005232 611 LPQVDAKKALEMLCLPVVTPLQEIIN 636 (707)
Q Consensus 611 ~p~~~~~~~l~~l~~p~~~~L~~~~~ 636 (707)
+|.. ++.++-.-++..|..++.
T Consensus 984 ~P~~----~l~~fr~~Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 984 LPTK----SLLSFRPLVLRALIKILD 1005 (1030)
T ss_pred CCCc----ccccccHHHHHHhhhccC
Confidence 8864 444444445555556555
No 124
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=35.77 E-value=2.4e+02 Score=31.22 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=44.8
Q ss_pred HHHHHHHhhccCCccccccHHHHHhhcCCCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh
Q 005232 473 ALFCIRAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE 548 (707)
Q Consensus 473 ~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~ 548 (707)
.|..++.+.+.-++.-.+++|.++..|++.. ....+......+|. ++.|+ .|..++++|...+.+..
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~------Qk~~e---vL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIK------QKQLE---VLQKCIPFLIGHLKDST 249 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHH------hccHH---HHHHHHHHHHHHhcccc
Confidence 5667777777777767788999999988864 23333333333343 34455 78899998887776554
No 125
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.73 E-value=4.5e+02 Score=27.45 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHHhc---------ChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHH
Q 005232 17 HPDDAVRMQADRWLQDFQH---------TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (707)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~---------s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~L 87 (707)
+.|.+.|..|-.-|+.+-. +-++|..+...+. +.+.++|-.||.++-..++++ |..+-..+...-
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNN----P~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNN----PKSQEQVIELGA 167 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcC----HHHHHHHHHccc
Confidence 4588888888888877654 3456776666665 467899999999999999875 433333333333
Q ss_pred HHHHHH-h-cCCChHHHHHHHHHHHHHHhhcc
Q 005232 88 NTLLKK-F-HKGPPKVRTQISIAVAALAVHIS 117 (707)
Q Consensus 88 l~~l~~-~-~~~~~~v~~qL~~ala~l~~~~~ 117 (707)
+..|.. + ++++-.+++|.--|++.+..+..
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 333322 2 24567788998888888876543
No 126
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.72 E-value=1.7e+02 Score=33.46 Aligned_cols=85 Identities=19% Similarity=0.340 Sum_probs=49.5
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHhhhhhc
Q 005232 492 MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLC 570 (707)
Q Consensus 492 l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~-v~~~Aa~al~~l~~~c~~~l~ 570 (707)
+|.+++.|.. ..+|+||+.+.-.+|=.|. -. =+..+++.|-.-+.+|.+ |+..|..|+.-|.-.|.+.+.
T Consensus 590 ~~s~V~lLse-s~N~HVRyGaA~ALGIaCA-----Gt---G~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~ 660 (929)
T KOG2062|consen 590 LPSTVSLLSE-SYNPHVRYGAAMALGIACA-----GT---GLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLC 660 (929)
T ss_pred chHHHHHHhh-hcChhhhhhHHHHHhhhhc-----CC---CcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccC
Confidence 4444444433 2357777777777775542 11 134455555444455543 666666677766667777777
Q ss_pred CCHHHHHHHHHHHhh
Q 005232 571 GYLDGLYNVYRTAVN 585 (707)
Q Consensus 571 ~~~~~l~~~~~~~~~ 585 (707)
|....+.+.+..++.
T Consensus 661 pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 661 PKVNGFRKQLEKVIN 675 (929)
T ss_pred chHHHHHHHHHHHhh
Confidence 777777777666654
No 127
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=35.68 E-value=2.5e+02 Score=31.22 Aligned_cols=125 Identities=9% Similarity=0.058 Sum_probs=75.3
Q ss_pred hhhHHHHHHhhcChH--HHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChH
Q 005232 429 VADVLIDAASVLGGD--ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQP 506 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~--~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~ 506 (707)
+.|+++.++..++.. .++.++.+.|.+. +...-..+++-+++-+.+.+++.....+..+..++-. ...+
T Consensus 395 ~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e--------Gg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIED-cey~ 465 (898)
T COG5240 395 AIDALRSLSLLFPSKKLSYLDFLGSSLLQE--------GGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIED-CEYH 465 (898)
T ss_pred eHHHHHHHHhhCcHHHHHHHHHHHHHHHhc--------ccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhh-cchh
Confidence 778889888888743 3555555555432 2344455666676666666665444445555554432 1245
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhh
Q 005232 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKK 568 (707)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~ 568 (707)
.+.-..+.++|+=..- +.+|. .|+..+++-+. |.+.. ++++|..||.+|.-.....
T Consensus 466 ~I~vrIL~iLG~EgP~-a~~P~--~yvrhIyNR~i--LEN~i-vRsaAv~aLskf~ln~~d~ 521 (898)
T COG5240 466 QITVRILGILGREGPR-AKTPG--KYVRHIYNRLI--LENNI-VRSAAVQALSKFALNISDV 521 (898)
T ss_pred HHHHHHHHHhcccCCC-CCCcc--hHHHHHHHHHH--HhhhH-HHHHHHHHHHHhccCcccc
Confidence 6666667777764321 12333 57888887653 34455 8999999999887654443
No 128
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=34.64 E-value=4.8e+02 Score=26.96 Aligned_cols=91 Identities=15% Similarity=0.281 Sum_probs=48.1
Q ss_pred hHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhh--------------hhcCCHHHHHHHHHHHhhccCCCCC--Chh
Q 005232 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRK--------------KLCGYLDGLYNVYRTAVNGEGSLKV--SAE 595 (707)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~--------------~l~~~~~~l~~~~~~~~~~~~~~~l--~~~ 595 (707)
|..++.+.|+...+..+ +...+++.|..+|.+ +. .+.|++..++.. ++....+...+ ++.
T Consensus 2 ~Y~~l~~ll~~s~~~~p-~~~s~~~~l~e~~~~-~~~~a~~Lvrlf~~~~~~~~fl~~li~~--Ev~~t~~~~tLFRgNS 77 (313)
T cd05394 2 YYSSLRSLLLKSPDVQP-ISASAAYILGEVCRD-KYDAVLPLVRLLLHHQKLVPFVAAVAEL--DLKDTQEANTIFRGNS 77 (313)
T ss_pred chHHHHHHHHhCcccCC-CcccHHHHHHHHHhh-HHHHHHHHHHHHHhcCcHHHHHHHHHHH--HHHhcCCHhhHhhcCc
Confidence 45667777777764444 567778888888865 21 112223222221 11111110011 223
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHH
Q 005232 596 DSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQE 633 (707)
Q Consensus 596 ~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~ 633 (707)
-..++|+..+..+. ..||...+.|++.++-.
T Consensus 78 laTK~m~~y~k~~G-------~~YL~~tL~pvI~~i~~ 108 (313)
T cd05394 78 LATRCLDEMMKIVG-------KHYLKVTLKPVLDEICD 108 (313)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHc
Confidence 34445555543332 48999999999977754
No 129
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=34.56 E-value=2.1e+02 Score=25.92 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcC--CHHHHHHHHHHH
Q 005232 531 SILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCG--YLDGLYNVYRTA 583 (707)
Q Consensus 531 ~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~--~~~~l~~~~~~~ 583 (707)
..+.++|.|+.+.+.+|. .......+...+.+-+...+.. .+...+..+...
T Consensus 74 ~~L~piL~Fl~k~i~~pr-~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~ 127 (148)
T PF09384_consen 74 ESLEPILKFLIKNITDPR-YTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRK 127 (148)
T ss_pred HHHHHHHHHHHHhCCCcc-cHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 379999999999999998 6666666666666666666653 344444444443
No 130
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.31 E-value=5.6e+02 Score=28.11 Aligned_cols=119 Identities=10% Similarity=0.115 Sum_probs=76.6
Q ss_pred CCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-C-CChHHHHHHHHHHHHhhHHHHhhCCCC-chhHHHHHHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILT 541 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l-~~~~~l~~t~~~~ig~~~~~l~~~p~~-~~~l~~~l~~l~ 541 (707)
..|..+=...--+..+...-.-.....+..++.++.+ . .+...+|..+|..+|..+.. . |+. -.+-+.++..++
T Consensus 229 ~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~-~--P~kv~th~~~~ldaii 305 (533)
T KOG2032|consen 229 EKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG-A--PDKVRTHKTTQLDAII 305 (533)
T ss_pred hcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc-C--cHHHHHhHHHHHHHHH
Confidence 4566554433333333333222234667888877653 2 34679999999999998776 1 221 135667777777
Q ss_pred hccCCCh--HHHHHHHHHHHHHHHHhh-hhhcCCHHHHHHHHHHHhhc
Q 005232 542 SGMSTSE--DTAAAAALAFRHICDDCR-KKLCGYLDGLYNVYRTAVNG 586 (707)
Q Consensus 542 ~~l~~~~--~v~~~Aa~al~~l~~~c~-~~l~~~~~~l~~~~~~~~~~ 586 (707)
.|+-++. +|.-.|-.++..+.+... ..+.+|+-.+--.+.++...
T Consensus 306 ~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~s 353 (533)
T KOG2032|consen 306 RGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDS 353 (533)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHh
Confidence 7775542 488888888888887654 36778877777777777664
No 131
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.61 E-value=3.2e+02 Score=31.74 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=60.3
Q ss_pred HHHHHHhhcC--hHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHH
Q 005232 432 VLIDAASVLG--GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLL 509 (707)
Q Consensus 432 ~l~~~~~~l~--~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~ 509 (707)
.+..|+..++ .+.|+.-+.+.+.+ .+---+-.+...+..+-..=+..--+.+.++...+..+- -|.-|
T Consensus 415 AiGrCA~~~~sv~~tCL~gLv~Llss---------hde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~-vp~AR 484 (968)
T KOG1060|consen 415 AIGRCASRIGSVTDTCLNGLVQLLSS---------HDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTIL-VPAAR 484 (968)
T ss_pred HHHHHHHhhCchhhHHHHHHHHHHhc---------ccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhh-hhhhh
Confidence 4555666555 25566665555532 222223344455555444433222245556665554432 57889
Q ss_pred HHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC
Q 005232 510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (707)
Q Consensus 510 ~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 547 (707)
.+.+|+||.|++.. |. ..|.++.++.+.+.+.
T Consensus 485 A~IiWLige~~e~v---pr---i~PDVLR~laksFs~E 516 (968)
T KOG1060|consen 485 AGIIWLIGEYCEIV---PR---IAPDVLRKLAKSFSDE 516 (968)
T ss_pred ceeeeeehhhhhhc---ch---hchHHHHHHHHhhccc
Confidence 99999999999864 43 7899999999888664
No 132
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=33.20 E-value=1.2e+02 Score=26.34 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcC-hhHHHH---------HHHHhhcCCCChhHHHHHHHHHHhhhhcCCC
Q 005232 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHT-IDAWQV---------ADNLLHDATSNLETLIFCSQTLRSKVQRDVE 73 (707)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s-~~aw~~---------~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~ 73 (707)
.|...+..+..+.|+....-|=.=|.+|-+. |.+=.+ ...|+. +.+++||+-|..++...+...|.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~~~w~ 119 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKLMVNNWE 119 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCC
Confidence 3445555554566777777777777776553 555444 356665 46889999999999999988884
No 133
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=32.82 E-value=6.6e+02 Score=27.12 Aligned_cols=173 Identities=17% Similarity=0.123 Sum_probs=82.7
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHh-cChhHHHHH----HHHhhcCCCChhHHHHH----HHHHHhhhhcCCC-CCChh
Q 005232 9 EALNALYHHPDDAVRMQADRWLQDFQ-HTIDAWQVA----DNLLHDATSNLETLIFC----SQTLRSKVQRDVE-ELPSE 78 (707)
Q Consensus 9 ~al~~ly~~~d~~~r~~A~~~L~~~q-~s~~aw~~~----~~LL~~~~~~~~v~~fa----a~~L~~ki~~~w~-~l~~~ 78 (707)
..+-.+++++|+.+|......|..+- +-++--... ..++.+- -....+++| ..++..-+ +++. .+.++
T Consensus 136 ~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~f-i~e~~~~~gI~elLeil~sii-~gf~~plk~e 213 (409)
T PF01603_consen 136 KKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRF-IYETERHNGIAELLEILGSII-NGFAVPLKEE 213 (409)
T ss_dssp HHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHH-HHTTS--STHHHHHHHHHHHH-TT--SS--HH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-hcCcccccCHHHHHHHHHHHH-hccCCCCcHH
Confidence 33445568899999999999988743 322222111 1111100 000012222 22223333 3343 67777
Q ss_pred hHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC-chhHHHHHhccchhhccc
Q 005232 79 AVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE-FVPGFLELLTVLPEEVFN 157 (707)
Q Consensus 79 ~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~-~~~~~L~~L~~L~EE~~~ 157 (707)
.+..++..|+.+... ..-..--.+|+.++..+.-+++.- =.. ++..++..+..+.. ...++|..+..+-+-+.
T Consensus 214 h~~fl~~vllPLh~~--~~~~~y~~~L~~~~~~f~~kdp~l-~~~--~i~~llk~WP~t~s~Kev~FL~el~~il~~~~- 287 (409)
T PF01603_consen 214 HKQFLRKVLLPLHKS--PHLSSYHQQLSYCVVQFLEKDPSL-AEP--VIKGLLKHWPKTNSQKEVLFLNELEEILEVLP- 287 (409)
T ss_dssp HHHHHHHTTGGGGGS--TGGGGTHHHHHHHHHHHHHH-GGG-HHH--HHHHHHHHS-SS-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhCchh-HHH--HHHHHHHhCCCCCchhHHHHHHHHHHHHHhcC-
Confidence 777777777766544 112334567777777766655430 000 34444444433221 12234444444333211
Q ss_pred ccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh--HHHHHHHHHH
Q 005232 158 YKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAF 202 (707)
Q Consensus 158 ~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~--~~~~~~l~~l 202 (707)
+ ..+......++..+..+++++ .+.+.++..+
T Consensus 288 ------~-------~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 288 ------P-------EEFQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp ------H-------HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred ------H-------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 134455667888888888775 4666666554
No 134
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=31.90 E-value=6e+02 Score=26.34 Aligned_cols=100 Identities=11% Similarity=0.169 Sum_probs=65.4
Q ss_pred CCcchhhHHHHHHHHhhccCCccccccHHHHHhh--------cC-CCCChHHHHHHHHHHHHhhHHH----HhhCCCCch
Q 005232 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAL--------LP-KLPQQPQLLQTVCLTIGAYSKW----FDAASSDPS 531 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~--------l~-~l~~~~~l~~t~~~~ig~~~~~----l~~~p~~~~ 531 (707)
.+-|+-|+ |.+++.+...+...-.+.++.+++. +. ++...|..|.....++...... +..-|. .
T Consensus 85 p~~r~~ev-L~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~--~ 161 (319)
T PF08767_consen 85 PDAREPEV-LSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPP--E 161 (319)
T ss_dssp GGGS-HHH-HHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-H--H
T ss_pred ccccChhH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCH--H
Confidence 34555554 5566677766665545566666653 22 2444688888888887776542 322222 3
Q ss_pred hHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh
Q 005232 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK 567 (707)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~ 567 (707)
.+..++..+.-|+.|+. ++...+..++..+.+.+..
T Consensus 162 ~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 162 QFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888898874 5888888888888887766
No 135
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=31.14 E-value=3.6e+02 Score=24.49 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=42.8
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHH
Q 005232 9 EALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLN 88 (707)
Q Consensus 9 ~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll 88 (707)
.++..+ .-.++....++.+.|.+...- .-.-|..+|...-.+..||.||-..|+. .++++....--+|+
T Consensus 43 ~~L~sv-~w~~~~~~~e~~~lL~~W~~~--~~~~aL~LL~~~~~~~~vr~yAv~~L~~--------~~~~~l~~ylpQLV 111 (152)
T cd00864 43 KLLKSV-NWNDDEEVSELYQLLKWWAPL--SPEDALELLSPKYPDPVVRQYAVRVLES--------ASDDELLLYLPQLV 111 (152)
T ss_pred HHHHHc-cCCCHHHHHHHHHHHhcCCCC--CHHHHHHHcCCcCCCHHHHHHHHHHHHh--------CCHHHHHHHHHHHH
Confidence 334443 235777777887777775322 2336788887544567788888877763 35555444444445
Q ss_pred HHH
Q 005232 89 TLL 91 (707)
Q Consensus 89 ~~l 91 (707)
+.+
T Consensus 112 QaL 114 (152)
T cd00864 112 QAL 114 (152)
T ss_pred HHH
Confidence 554
No 136
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.04 E-value=1.1e+03 Score=28.93 Aligned_cols=231 Identities=12% Similarity=0.152 Sum_probs=114.2
Q ss_pred hHHHHHHHhhhcccCc---------hhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHH
Q 005232 314 SMLIVHALLEVASHPE---------YDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLV 384 (707)
Q Consensus 314 ~~~~~~~ll~~~~~~~---------~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 384 (707)
..+++++++.|.+..+ -+.++.++.--..+.+. +..+|....+. ..+..|+..+..++.++
T Consensus 113 l~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~--es~DYpl~~~g--------~~~k~fr~~~~~fl~~l 182 (1048)
T KOG2011|consen 113 LLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDER--ESGDYPLTSKG--------PEWKNFRENFCEFLPTL 182 (1048)
T ss_pred HHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhh--hhccCcCCCCC--------HHHHHHHHHHHHHHHHH
Confidence 4578899999877532 13344444432233331 11234332111 13678888899999999
Q ss_pred HhhccCCC-CCCCCChhhh---------HHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHH---HHHH
Q 005232 385 SFRVQYPQ-DYQDLSLEDL---------KEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLK---ILYI 451 (707)
Q Consensus 385 ~~k~~~p~-d~~~~~~d~~---------~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~---~l~~ 451 (707)
+.+++|.. -++..--|+. -..+.||+- ||+. +.+....++.+.- +... ....
T Consensus 183 V~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhT------aTl~-------~mklmt~Lv~va~--~Ls~~~~~tsk 247 (1048)
T KOG2011|consen 183 VSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHT------ATLA-------AMKLMTALVSVAL--NLSSHNDKTSK 247 (1048)
T ss_pred HHHhccCCccccchhHHHHHHHHHHhccccHHHHHHH------HHHH-------HHHHHHHHHHHHH--HHHHhhHHHHH
Confidence 99999943 2222211211 123566664 2211 2222222222211 0000 0111
Q ss_pred HHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcC--CC-CChHHHHHHHHHHHHhhHHHHhhCCC
Q 005232 452 KFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP--KL-PQQPQLLQTVCLTIGAYSKWFDAASS 528 (707)
Q Consensus 452 ~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~--~l-~~~~~l~~t~~~~ig~~~~~l~~~p~ 528 (707)
++...- ... -.+=.++|..+....-..+... +-..++..++..+. +. ...|.+|.-++.-+| .|+...|+
T Consensus 248 QleaEr--~k~-r~~rarle~Ll~~r~etqe~~d-~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLg---iWi~~yP~ 320 (1048)
T KOG2011|consen 248 QLEAER--NKS-RGNRARLESLLMLRKETQEQQD-EIESMINDIFDSVFVHRYRDVDPDIRAICIQELG---IWIKSYPE 320 (1048)
T ss_pred HHHHHh--ccc-ccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhheeeeecccCchHHHHHHHHHHH---HHHHhccH
Confidence 111100 000 0111156776666555444433 12235555555432 22 235888888877776 79999887
Q ss_pred CchhHH-HHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Q 005232 529 DPSILA-SVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVY 580 (707)
Q Consensus 529 ~~~~l~-~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~ 580 (707)
+ ++. ..|.|+==.|++.. .|+..+-.|+.+|-+. ..+.+.+..+.+.+
T Consensus 321 ~--Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~--~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 321 I--FLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK--DEDKDKLELFTSRF 370 (1048)
T ss_pred H--HhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc--cccchHHHHHHHHH
Confidence 3 222 22333322355543 5999999999998876 33444444444443
No 137
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=30.99 E-value=2.8e+02 Score=22.71 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHhhHHHHhh-CCCCchhHHHHHHHHHhccCCCh---HHHHHHHHHHHHHHHHhhh-hhcCCH
Q 005232 504 QQPQLLQTVCLTIGAYSKWFDA-ASSDPSILASVLSILTSGMSTSE---DTAAAAALAFRHICDDCRK-KLCGYL 573 (707)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~-~p~~~~~l~~~l~~l~~~l~~~~---~v~~~Aa~al~~l~~~c~~-~l~~~~ 573 (707)
.|..+|.-+..+++..+.-+.. +|. +-+.+...+.+.+.+|. ...--|-.+|..+=.+.-. .+.|++
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~---L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~vr~~ilP~l 89 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPT---LQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAVRALILPNL 89 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccch---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 4889999999999999876554 443 77888888888887764 2455666677776544333 344554
No 138
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.47 E-value=9e+02 Score=27.97 Aligned_cols=104 Identities=21% Similarity=0.297 Sum_probs=63.4
Q ss_pred HHHHHHHHhcChhHHHHH----HHHhhc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChH
Q 005232 26 ADRWLQDFQHTIDAWQVA----DNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPK 100 (707)
Q Consensus 26 A~~~L~~~q~s~~aw~~~----~~LL~~-~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~ 100 (707)
+-+|...+++.+-.-.+. ..||.. ++++-.|||=..++|...+. .-.+++++-...|...++.-+.. ..+.
T Consensus 66 la~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~D---rep~ 141 (892)
T KOG2025|consen 66 LARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKD---REPN 141 (892)
T ss_pred HHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhc---cCch
Confidence 444555555543332233 334432 34566799999998876654 55688888888888888777665 5678
Q ss_pred HHHHHHHHHHHHHhhc-cc-cccCCccchHHHHHhcCCCC
Q 005232 101 VRTQISIAVAALAVHI-SA-EDWGGGGIVNWLRDEMNSHP 138 (707)
Q Consensus 101 v~~qL~~ala~l~~~~-~~-~~W~~~~~i~~l~~~~~~~~ 138 (707)
||.|--.+|+.+ |. +. ++.| ++..+...++++|
T Consensus 142 VRiqAv~aLsrl--Q~d~~dee~~---v~n~l~~liqnDp 176 (892)
T KOG2025|consen 142 VRIQAVLALSRL--QGDPKDEECP---VVNLLKDLIQNDP 176 (892)
T ss_pred HHHHHHHHHHHH--hcCCCCCccc---HHHHHHHHHhcCC
Confidence 999877666654 42 21 2233 4445555555554
No 139
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=29.95 E-value=5.4e+02 Score=25.22 Aligned_cols=171 Identities=13% Similarity=0.136 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH-H
Q 005232 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVY-R 581 (707)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~-~ 581 (707)
.+|.+....++.+...+..- + . ..+.++..+......+. .....+-..+-++...-.. ..|++..++... .
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~--~-~---~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f~~L~~~L~~~~~ 85 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHK--N-V---CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HFPFLQPLLLLLIL 85 (234)
T ss_pred CChHHHHHHHHHHHHHhccC--c-c---chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHh
Confidence 37888888888888776422 1 2 67788888776666554 1212233333333332222 225555555432 1
Q ss_pred HHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHh
Q 005232 582 TAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIF 661 (707)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 661 (707)
.+.....+..-..+.......++..++...|. -..+++..+..++++.. ........++.++.+.
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~---------~g~~ll~~ls~~L~~~~------~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSRPD---------HGVDLLPLLSGCLNQSC------DEVAQALALEALAPLC 150 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhChh---------hHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHH
Confidence 11111100011223333334466666666554 23334444455553111 1223446788888887
Q ss_pred hhcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHh
Q 005232 662 RYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACK 703 (707)
Q Consensus 662 ~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~ 703 (707)
+. .++++ ...|-++.+-+ .....+.|++.+|+.+.
T Consensus 151 ~~-----~vvd~-~s~w~vl~~~l-~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 151 EA-----EVVDF-YSAWKVLQKKL-SLDYRPLVLKSLCSLFA 185 (234)
T ss_pred HH-----hhccH-HHHHHHHHHhc-CCccchHHHHHHHHHHH
Confidence 43 23333 34576666655 44456788887777764
No 140
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=29.91 E-value=9.4e+02 Score=28.01 Aligned_cols=137 Identities=10% Similarity=0.174 Sum_probs=75.6
Q ss_pred ccHHHHHhhcCC---CCC---hHHHHHHHHHHHHhhHHHHhhCCCCchhHH-HHHHHHHhccCCCh-HHHHHHHHHHHHH
Q 005232 490 EVMPQVMALLPK---LPQ---QPQLLQTVCLTIGAYSKWFDAASSDPSILA-SVLSILTSGMSTSE-DTAAAAALAFRHI 561 (707)
Q Consensus 490 ~~l~~l~~~l~~---l~~---~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~-~~l~~l~~~l~~~~-~v~~~Aa~al~~l 561 (707)
..++-+.+.+.+ -|+ +++=...+++++++...++....-....++ -+++.+...++++- -++++||.-+.++
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 345555555533 232 578888999999999887776532111122 22244445556653 3788999988888
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHh
Q 005232 562 CDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIIN 636 (707)
Q Consensus 562 ~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~ 636 (707)
-++-+.. .-+..+++...+.+.+. .+ ..+....-|+...+.. ++.-+.+...+.+.|++|-.+.+
T Consensus 488 eeDfkd~--~ill~aye~t~ncl~nn---~l--pv~ieAalAlq~fi~~---~q~h~k~sahVp~tmekLLsLSn 552 (970)
T COG5656 488 EEDFKDN--GILLEAYENTHNCLKNN---HL--PVMIEAALALQFFIFN---EQSHEKFSAHVPETMEKLLSLSN 552 (970)
T ss_pred HHhcccc--hHHHHHHHHHHHHHhcC---Cc--chhhhHHHHHHHHHhc---hhhhHHHHhhhhHHHHHHHHhcc
Confidence 5554331 11222222222223221 11 1233334444444444 34567788888999988777644
No 141
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=28.39 E-value=6.2e+02 Score=26.22 Aligned_cols=93 Identities=11% Similarity=0.155 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHH-------HHHHHHHHhhc-----cCCCCC--ChhhH
Q 005232 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDG-------LYNVYRTAVNG-----EGSLKV--SAEDS 597 (707)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~-------l~~~~~~~~~~-----~~~~~l--~~~~~ 597 (707)
+..++.+.+++....++ +..+++.++..+|.+++..+...+-. +...+..+... .+...+ ++.-.
T Consensus 2 ~y~~l~~ll~~~~~~~~-~~~s~~~~l~~v~~~~~~~~a~~Lv~if~~~g~l~~ll~~li~~Ei~~t~~~~tLFRgNSl~ 80 (315)
T cd05128 2 YYQPLRDLLLESVDVGP-ISASAAAILEEVCREERQDVAVPLVKLFLGQGLIVPFLDALAQLELKRTQDPNTLFRGNSLA 80 (315)
T ss_pred CcHHHHHHHHcccccCC-CChhHHHHHHHhCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCHhHHhcCCcHH
Confidence 44566777777665555 67888888898887555443321111 11111111111 000000 23334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHH
Q 005232 598 LHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQ 632 (707)
Q Consensus 598 ~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~ 632 (707)
.++++...... -..|+...+.|++..+-
T Consensus 81 TK~~~~y~r~~-------G~~YL~~~L~pvI~~i~ 108 (315)
T cd05128 81 SKSMEEFMKLA-------GMHYLHVTLKPIIDKIF 108 (315)
T ss_pred HHHHHHHHHHh-------HHHHHHHHHHHHHHHHH
Confidence 55666665432 24799999999997654
No 142
>PF05536 Neurochondrin: Neurochondrin
Probab=28.35 E-value=9e+02 Score=27.28 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=99.7
Q ss_pred chhhHHHHHHHHhhccCCcc----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHh-----hCCCCchhHHHHHH
Q 005232 468 RPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFD-----AASSDPSILASVLS 538 (707)
Q Consensus 468 ~~~Ea~l~~l~~ia~~~~~~----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~-----~~p~~~~~l~~~l~ 538 (707)
.-++=|+.++.+++..-... +...++.+++.+++ ++.....++.++........ .++ ..+..+++
T Consensus 114 ~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~---~~~~~E~Al~lL~~Lls~~~~~~~~~~~---~~l~~il~ 187 (543)
T PF05536_consen 114 ETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN---QSFQMEIALNLLLNLLSRLGQKSWAEDS---QLLHSILP 187 (543)
T ss_pred hHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh---CcchHHHHHHHHHHHHHhcchhhhhhhH---HHHHHHHH
Confidence 33556677777777332211 12456666666655 44445555554444433332 233 25666777
Q ss_pred HHHhccCCCh-HHHHHHHHHHHHHHHHhhhh------hcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcC
Q 005232 539 ILTSGMSTSE-DTAAAAALAFRHICDDCRKK------LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (707)
Q Consensus 539 ~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~------l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (707)
.+...+...+ ...-.++.-|..|-..+... -..+...+...+..++++ +++...|...+...+.+++..
T Consensus 188 ~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s----r~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 188 SLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS----RLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred HHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHh
Confidence 7665554322 12344455555555555211 114788899999999876 577888888888888888775
Q ss_pred ChHH--------HHHHHHHhhhhhHHHHHHHHhc----CCCcccccCchhhhHHHHHHHHHhhhc
Q 005232 612 PQVD--------AKKALEMLCLPVVTPLQEIINQ----GPEILQKKHPRDLTVHIDRFAYIFRYV 664 (707)
Q Consensus 612 p~~~--------~~~~l~~l~~p~~~~L~~~~~~----~~~~~~~~~~~~~~~~i~~l~~~~~~~ 664 (707)
..+- ..+.+.-+++-..-.++..+.. .+........+.++..++.+..++.++
T Consensus 264 G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~l 328 (543)
T PF05536_consen 264 GPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGYL 328 (543)
T ss_pred ChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5321 1234445555555555555544 211111112233445555555555554
No 143
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=27.94 E-value=1.8e+02 Score=28.94 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=51.0
Q ss_pred hhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChH
Q 005232 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED 549 (707)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~ 549 (707)
++.++|.++.++.. +.+..+.+.+.. ..+..|-.+.+++|++- +|. -+|.+...|...-.+|-
T Consensus 173 Ry~amF~LRn~g~E------eaI~al~~~l~~--~SalfrhEvAfVfGQl~-----s~~---ai~~L~k~L~d~~E~pM- 235 (289)
T KOG0567|consen 173 RYRAMFYLRNIGTE------EAINALIDGLAD--DSALFRHEVAFVFGQLQ-----SPA---AIPSLIKVLLDETEHPM- 235 (289)
T ss_pred HHhhhhHhhccCcH------HHHHHHHHhccc--chHHHHHHHHHHHhhcc-----chh---hhHHHHHHHHhhhcchH-
Confidence 44677777655322 233333333221 25778888888998862 343 45555555555555666
Q ss_pred HHHHHHHHHHHHHH-Hhhhhhc
Q 005232 550 TAAAAALAFRHICD-DCRKKLC 570 (707)
Q Consensus 550 v~~~Aa~al~~l~~-~c~~~l~ 570 (707)
|+--||.||..+.. +|.+.|.
T Consensus 236 VRhEaAeALGaIa~e~~~~vL~ 257 (289)
T KOG0567|consen 236 VRHEAAEALGAIADEDCVEVLK 257 (289)
T ss_pred HHHHHHHHHHhhcCHHHHHHHH
Confidence 88899999999884 5555443
No 144
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=27.78 E-value=1e+03 Score=27.87 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=42.1
Q ss_pred ccHHHHHhhcCC-C-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH-HHHHHh-cc--CCChHHHHHHHHHHHHHHH
Q 005232 490 EVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASV-LSILTS-GM--STSEDTAAAAALAFRHICD 563 (707)
Q Consensus 490 ~~l~~l~~~l~~-l-~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~-l~~l~~-~l--~~~~~v~~~Aa~al~~l~~ 563 (707)
++++.++..+.+ + ..||.||+++...|+.+-. -+++ +.+.. +-.+.. .+ .+|. |.+.|-.++..++.
T Consensus 123 el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~---ld~~---l~~~~g~~~~l~~l~~D~dP~-Vi~nAl~sl~~i~~ 195 (757)
T COG5096 123 ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR---LDKD---LYHELGLIDILKELVADSDPI-VIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh---cCHh---hhhcccHHHHHHHHhhCCCch-HHHHHHHHHHHhch
Confidence 455666665544 2 2489999999999998743 3333 33333 222211 22 3455 88888888888877
Q ss_pred H
Q 005232 564 D 564 (707)
Q Consensus 564 ~ 564 (707)
+
T Consensus 196 e 196 (757)
T COG5096 196 E 196 (757)
T ss_pred h
Confidence 6
No 145
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=27.69 E-value=4.5e+02 Score=23.59 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=44.3
Q ss_pred HHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHhhhhhcCCH--HHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHh
Q 005232 534 ASVLSILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (707)
Q Consensus 534 ~~~l~~l~~~l~~--~~~v~~~Aa~al~~l~~~c~~~l~~~~--~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (707)
..++..+.+-+.+ |+ ++..|-..+..+.+.|+..+...+ ..+++.+..++... .+...+.++++-+-.-..
T Consensus 36 k~a~ral~KRl~~~n~~-v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~----~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHKDPN-VQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR----VHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc----CCHHHHHHHHHHHHHHHH
Confidence 4455555555544 44 888888889999999987655322 33566666665531 345555555555554444
Q ss_pred cCC
Q 005232 610 ELP 612 (707)
Q Consensus 610 ~~p 612 (707)
..+
T Consensus 111 ~f~ 113 (144)
T cd03568 111 EFK 113 (144)
T ss_pred HhC
Confidence 443
No 146
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=26.82 E-value=7.2e+02 Score=25.63 Aligned_cols=113 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHH
Q 005232 574 DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVH 653 (707)
Q Consensus 574 ~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~ 653 (707)
..|.+.+..+.... ...|...++++..++..-. ....+..-..-++..+.++++.+ ..++....
T Consensus 43 ~~L~~~Id~l~eK~------~~~Re~aL~~l~~~l~~~~---~~d~v~~~~~tL~~~~~k~lkkg-------~~~E~~lA 106 (309)
T PF05004_consen 43 DKLKEAIDLLTEKS------SSTREAALEALIRALSSRY---LPDFVEDRRETLLDALLKSLKKG-------KSEEQALA 106 (309)
T ss_pred HHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHhccC-------CHHHHHHH
Q ss_pred HHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHH
Q 005232 654 IDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 702 (707)
Q Consensus 654 i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~ 702 (707)
...++.+.=.++.....-.+++.+.|+|.+++.....+..+-.++|.++
T Consensus 107 ~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aL 155 (309)
T PF05004_consen 107 ARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEAL 155 (309)
T ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
No 147
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=25.04 E-value=5.8e+02 Score=29.35 Aligned_cols=184 Identities=10% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHH
Q 005232 472 AALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTA 551 (707)
Q Consensus 472 a~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~ 551 (707)
.+|-.+-.+.+.-+...+.++..+-+.++.+| ++| +...+++.+...+.+.. ..
T Consensus 274 ~aLrfLD~l~~kdn~qKs~Flk~Ls~~ip~fp--~rv-----------------------~~~kiLP~L~~el~n~~-~v 327 (700)
T KOG2137|consen 274 KALRFLDDLPQKDNSQKSSFLKGLSKLIPTFP--ARV-----------------------LFQKILPTLVAELVNTK-MV 327 (700)
T ss_pred hhhhhcccccccCcHHHHHHHHHHHHhhccCC--HHH-----------------------HHHhhhhHHHHHhcccc-cc
Q ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHH
Q 005232 552 AAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPL 631 (707)
Q Consensus 552 ~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L 631 (707)
...---+..|.+.+... -|..-++..+..+++. ..+.+...-++|-.-.+++.+|+++....+..++--.++..
T Consensus 328 p~~LP~v~~i~~~~s~~--~~~~~~~p~l~pi~~~----~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~ 401 (700)
T KOG2137|consen 328 PIVLPLVLLIAEGLSQN--EFGPKMLPALKPIYSA----SDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDS 401 (700)
T ss_pred ccccchhhhhhhccchh--hhhhhhhHHHHHHhcc----CCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCc
Q ss_pred HHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhhhh
Q 005232 632 QEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAV 706 (707)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~~ 706 (707)
.-.+++.. +..+.++...+ ++..+-+.+.|-++.+ .....+..+.-.+.-|+...+
T Consensus 402 ~~~iQ~~~--------------L~~lptv~e~i----D~~~vk~~ilP~l~~l-~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 402 DVQIQELA--------------LQILPTVAESI----DVPFVKQAILPRLKNL-AFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred chhhHHHH--------------HHhhhHHHHhc----cHHHHHHHHHHHhhcc-hhcccchHHHHHHHHHHHHHH
No 148
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.34 E-value=3.2e+02 Score=30.44 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=64.2
Q ss_pred ccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHhhhh
Q 005232 490 EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKK 568 (707)
Q Consensus 490 ~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~-v~~~Aa~al~~l~~~c~~~ 568 (707)
..++..++.|.. ..+++||+.....+|-.+. . . =...+++.|-..+.++.+ |+..|+.|..-|.-.|-+.
T Consensus 585 ~~lv~tvelLs~-shN~hVR~g~AvaLGiaca---g-~----G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 585 DLLVGTVELLSE-SHNFHVRAGVAVALGIACA---G-T----GDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred chhhHHHHHhhh-ccchhhhhhhHHHhhhhhc---C-C----ccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 345666666554 2378999999999997652 1 1 134556666555666654 7888899999999999999
Q ss_pred hcCCHHHHHHHHHHHhhc
Q 005232 569 LCGYLDGLYNVYRTAVNG 586 (707)
Q Consensus 569 l~~~~~~l~~~~~~~~~~ 586 (707)
|.|....|...+..++..
T Consensus 656 Lnp~v~~I~k~f~~vI~~ 673 (926)
T COG5116 656 LNPNVKRIIKKFNRVIVD 673 (926)
T ss_pred cChhHHHHHHHHHHHHhh
Confidence 999999999888887653
No 149
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=24.22 E-value=1.2e+03 Score=27.30 Aligned_cols=84 Identities=11% Similarity=0.182 Sum_probs=48.7
Q ss_pred cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCC--chhHHHHHHHHHhccCCChHHHHHHHHHHHHHHH--H
Q 005232 489 AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD--PSILASVLSILTSGMSTSEDTAAAAALAFRHICD--D 564 (707)
Q Consensus 489 ~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~--~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~--~ 564 (707)
+..++.+..+++. .|..++..++.++..+|.--...+.. ..++|.+..+ +.+++ .+..|...|..++. +
T Consensus 330 ~giV~kL~kLl~s--~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~L----L~d~~-~~~val~iLy~LS~dd~ 402 (708)
T PF05804_consen 330 SGIVEKLLKLLPS--ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVEL----LKDPN-FREVALKILYNLSMDDE 402 (708)
T ss_pred cCCHHHHHHHhcC--CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHH----hCCCc-hHHHHHHHHHHhccCHh
Confidence 3566777776654 37788999999998876322211110 0144444444 45666 66777888888885 3
Q ss_pred hhhhhc--CCHHHHHHH
Q 005232 565 CRKKLC--GYLDGLYNV 579 (707)
Q Consensus 565 c~~~l~--~~~~~l~~~ 579 (707)
++..+. .-++.+++.
T Consensus 403 ~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 403 ARSMFAYTDCIPQLMQM 419 (708)
T ss_pred hHHHHhhcchHHHHHHH
Confidence 555443 234444444
No 150
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.10 E-value=1.2e+03 Score=27.35 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Q 005232 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 582 (707)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~ 582 (707)
+++-+|.+++++++...- |- ..|-+|-.+-++.+++. -|+..||+|+-++=.--. .+-++|...+..
T Consensus 120 pN~LiRasALRvlSsIRv-----p~---IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~----e~k~qL~e~I~~ 187 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSIRV-----PM---IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP----EQKDQLEEVIKK 187 (968)
T ss_pred CcHHHHHHHHHHHHhcch-----hh---HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh----hhHHHHHHHHHH
Confidence 367888888888876531 32 45555666667777764 488899999888643111 122366777777
Q ss_pred Hhhc
Q 005232 583 AVNG 586 (707)
Q Consensus 583 ~~~~ 586 (707)
++..
T Consensus 188 LLaD 191 (968)
T KOG1060|consen 188 LLAD 191 (968)
T ss_pred HhcC
Confidence 7653
No 151
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=23.80 E-value=9.8e+02 Score=26.16 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--cChhHHH--H------HHHHhhcCCCChhHHHHHHHHHHhhhhcCCC
Q 005232 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQ--HTIDAWQ--V------ADNLLHDATSNLETLIFCSQTLRSKVQRDVE 73 (707)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q--~s~~aw~--~------~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~ 73 (707)
.+.|.+.+..+-++-..+.++.|...|..+- .+-.-|. + ..++|.+ +.+...+-.|..+|+..++..-.
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d-~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSD-SEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHhchH
Confidence 4567888888865556778899998887654 3455586 2 2344443 56777899999999998876533
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHHHhhccccccCCccchHHHHHhcCC-CCCchhHHHHHhccc
Q 005232 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISI-AVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVL 151 (707)
Q Consensus 74 ~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~-ala~l~~~~~~~~W~~~~~i~~l~~~~~~-~~~~~~~~L~~L~~L 151 (707)
.+=+ .-+.--..+|+.-.. ..+.|.+--.. ++..++.+.+-.. +..+...+.+ +.....+++..++.+
T Consensus 364 ~l~D-stE~ai~K~Leaa~d---s~~~v~~~Aeed~~~~las~~P~~~------I~~i~~~Ilt~D~~~~~~~iKm~Tkl 433 (516)
T KOG2956|consen 364 RLFD-STEIAICKVLEAAKD---SQDEVMRVAEEDCLTTLASHLPLQC------IVNISPLILTADEPRAVAVIKMLTKL 433 (516)
T ss_pred hhhc-hHHHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHhhCchhH------HHHHhhHHhcCcchHHHHHHHHHHHH
Confidence 3211 112222233333333 22333333333 3334444443211 1222222222 212234556677777
Q ss_pred hhhcccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhh--hHHHHHHHHHHHHHHh
Q 005232 152 PEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLR 207 (707)
Q Consensus 152 ~EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~--~~~~~~~l~~l~sWi~ 207 (707)
.|++.. ++|....+.+...+.+...+ ..+++.++=|+..-+.
T Consensus 434 ~e~l~~--------------EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 434 FERLSA--------------EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HhhcCH--------------HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 666531 34444445555444444443 2588889999876554
No 152
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.64 E-value=1.3e+03 Score=27.37 Aligned_cols=127 Identities=12% Similarity=0.077 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 532 ILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~-v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
+...++.-++..++.|.. =-.+--+|++|+..-..+...|+.+.++..+-+++..-....-++.-..+++|++|.++..
T Consensus 545 ~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~ 624 (960)
T KOG1992|consen 545 FVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRK 624 (960)
T ss_pred HHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 456667777777766641 2346677889998888888889999888877776542110012355688999999999988
Q ss_pred CChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC
Q 005232 611 LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH 666 (707)
Q Consensus 611 ~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 666 (707)
..... ...+.++-..++--++.++++. ...-+-+.++.+|.++.....
T Consensus 625 t~~~~-~~~vs~~e~aL~p~fq~Il~eD-------I~EfiPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 625 TCKAN-PSAVSSLEEALFPVFQTILSED-------IQEFIPYVFQLLAVLVEHSSG 672 (960)
T ss_pred HhccC-chHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCC
Confidence 64322 1233344444444445555543 122344678999998887543
No 153
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.47 E-value=7.6e+02 Score=28.25 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred hHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcC--hHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHH
Q 005232 402 LKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLG--GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRA 479 (707)
Q Consensus 402 ~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~--~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ 479 (707)
+|+|.+.|.. +.+.+-.++.--+ ++..+.++...+...+. .-+.-++|++..
T Consensus 383 EDEf~EVR~A-----------------AV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~---------~VRL~ai~aL~~ 436 (823)
T KOG2259|consen 383 EDEFYEVRRA-----------------AVASLCSLATSSPGFAVRALDFLVDMFNDEIE---------VVRLKAIFALTM 436 (823)
T ss_pred hHHHHHHHHH-----------------HHHHHHHHHcCCCCcHHHHHHHHHHHhccHHH---------HHHHHHHHHHHH
Q ss_pred hhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHH
Q 005232 480 ISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFR 559 (707)
Q Consensus 480 ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~ 559 (707)
|+..+.-.++ .++.++..|-.-. +.+|.+.-.+++. .+-++.. .+..++.-++..+..=+.=+..-..++.
T Consensus 437 Is~~l~i~ee-ql~~il~~L~D~s--~dvRe~l~elL~~-----~~~~d~~-~i~m~v~~lL~~L~kyPqDrd~i~~cm~ 507 (823)
T KOG2259|consen 437 ISVHLAIREE-QLRQILESLEDRS--VDVREALRELLKN-----ARVSDLE-CIDMCVAHLLKNLGKYPQDRDEILRCMG 507 (823)
T ss_pred HHHHheecHH-HHHHHHHHHHhcC--HHHHHHHHHHHHh-----cCCCcHH-HHHHHHHHHHHHhhhCCCCcHHHHHHHH
Q ss_pred HHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHH
Q 005232 560 HICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 600 (707)
Q Consensus 560 ~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l 600 (707)
+|-+.-+..+...+..++......-.. .-+.+++.++
T Consensus 508 ~iGqnH~~lv~s~m~rfl~kh~~f~t~----e~s~ed~~y~ 544 (823)
T KOG2259|consen 508 RIGQNHRRLVLSNMGRFLEKHTSFATI----EPSLEDGFYI 544 (823)
T ss_pred HHhccChhhHHHHHHHHHHhccccccc----CccccChhhh
No 154
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.45 E-value=6.8e+02 Score=25.53 Aligned_cols=98 Identities=14% Similarity=0.218 Sum_probs=52.4
Q ss_pred CcchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-CC---ChHHHHHHHHHHHHhhHH--HHhhCCCCchhHHHHHHH
Q 005232 466 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP---QQPQLLQTVCLTIGAYSK--WFDAASSDPSILASVLSI 539 (707)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~---~~~~l~~t~~~~ig~~~~--~l~~~p~~~~~l~~~l~~ 539 (707)
+-+.+.|++-+++. ...-...+|-++.++.. +. .+..+.-|.+.++.++-+ ++.-+|...+++|+++..
T Consensus 211 ~~~~r~aAl~sLr~-----dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTc 285 (450)
T COG5095 211 DEQTRDAALESLRN-----DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTC 285 (450)
T ss_pred HHHHHHHHHHHhcc-----CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHH
Confidence 34556788777652 11123456666665532 21 144455555555544311 111234334677777777
Q ss_pred HHh-ccC-CCh-----HHHHHHHHHHHHHHHHhhhh
Q 005232 540 LTS-GMS-TSE-----DTAAAAALAFRHICDDCRKK 568 (707)
Q Consensus 540 l~~-~l~-~~~-----~v~~~Aa~al~~l~~~c~~~ 568 (707)
++. .+. .|. .++.-||..+...|....+.
T Consensus 286 liakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 286 LIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 764 343 233 27788888888888766543
No 155
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.20 E-value=1.1e+03 Score=26.28 Aligned_cols=90 Identities=11% Similarity=-0.002 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHHhhccC-CCCCChhhHHHHHHHHHHHHh-cCChHHHHHHHHHhhhh
Q 005232 550 TAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEG-SLKVSAEDSLHLVEALSMVIT-ELPQVDAKKALEMLCLP 626 (707)
Q Consensus 550 v~~~Aa~al~~l~~~-c~~~l~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~~l~eai~~vi~-~~p~~~~~~~l~~l~~p 626 (707)
+..-|-.++..+++. -++.+...-+.+++......+... ..-++...+..+|+++...=- .+..+....+....+.|
T Consensus 313 L~~Da~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~~~n~~~~~Lqp 392 (748)
T KOG4541|consen 313 LVPDALQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEEECNLGSNKLQP 392 (748)
T ss_pred hhHHHHHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 555555555555554 233444444455555555544321 112356678888888876533 34455666888899999
Q ss_pred hHHHHHHHHhcCC
Q 005232 627 VVTPLQEIINQGP 639 (707)
Q Consensus 627 ~~~~L~~~~~~~~ 639 (707)
+-+++-...++++
T Consensus 393 L~~Rf~~~~nq~~ 405 (748)
T KOG4541|consen 393 LPSRFFTYFNQHN 405 (748)
T ss_pred cHHHHHHHhcccc
Confidence 9999888888764
No 156
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=22.03 E-value=1.1e+03 Score=26.13 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=64.0
Q ss_pred cccHHHHHhhcCC----CC--ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 005232 489 AEVMPQVMALLPK----LP--QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHIC 562 (707)
Q Consensus 489 ~~~l~~l~~~l~~----l~--~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~ 562 (707)
+.++...+.++.. -| .+|.+.++++.-|..-++=.+.-|- .-..+++.+.+. +-.+++ .++|
T Consensus 149 ~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~vgeS~qyPPV---NWaalLsPLMRl-nfGeEv--------q~lC 216 (589)
T PF11229_consen 149 SSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATVGESYQYPPV---NWAALLSPLMRL-NFGEEV--------QQLC 216 (589)
T ss_pred hhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhcCCCCCCCCc---cHHHHhhHHHhc-cccHHH--------HHHH
Confidence 4566667776532 23 2577778888777554432332232 455566555442 111212 3333
Q ss_pred HHhhh-hh--cCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhh
Q 005232 563 DDCRK-KL--CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLP 626 (707)
Q Consensus 563 ~~c~~-~l--~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p 626 (707)
-.-.- .. .+....++..... -+--+.++...+.++++++...+..+|+++++.+++.+.-.
T Consensus 217 LeiAvtQaqSSqsAa~fLg~Wls---Ppli~sLs~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq 280 (589)
T PF11229_consen 217 LEIAVTQAQSSQSAAMFLGSWLS---PPLIHSLSVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQ 280 (589)
T ss_pred HHHHHHhccccccHHHHHHhhcC---cchhhhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 21110 00 1122223322111 00011356778999999999999999999887777654433
No 157
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=21.75 E-value=2.9e+02 Score=19.96 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHH
Q 005232 79 AVRGLQDSLNTLLKKFHK-GPPKVRTQISIAVAALA 113 (707)
Q Consensus 79 ~~~~lr~~Ll~~l~~~~~-~~~~v~~qL~~ala~l~ 113 (707)
+-..+-+.|.+.|...+. -++-+|.++|.+|..+-
T Consensus 12 ~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLLR 47 (52)
T PF08158_consen 12 ETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILLR 47 (52)
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 455566777888877644 36789999999987663
No 158
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=21.47 E-value=6.9e+02 Score=25.29 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCcc---cccchhHHHHHhcC----C--------CC--ccHHHHHHHHHHHHhh
Q 005232 192 NELKEQVLEAFASWLRLKHRIPGSV---LASHPLVLTALSSL----H--------SE--ILSEASVNVISELIHY 249 (707)
Q Consensus 192 ~~~~~~~l~~l~sWi~~~~~~~~~~---~~~~~ll~~~~~~L----~--------~~--~~~~~a~~~l~~ii~~ 249 (707)
+..+...++|+...+.- ++.+. +....+.+.+.+++ . ++ .+...|..|+..++..
T Consensus 133 ~~~K~~G~~lL~~ll~~---~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 133 PEIKIQGCQLLHHLLEK---VPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKT 204 (282)
T ss_pred HHHHHHHHHHHHHHHHh---CChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 35777888888888873 44444 44444444333322 2 11 2456777777777653
No 159
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=21.30 E-value=4.6e+02 Score=21.45 Aligned_cols=83 Identities=22% Similarity=0.109 Sum_probs=50.7
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc
Q 005232 40 WQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAE 119 (707)
Q Consensus 40 w~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~ 119 (707)
.+-+..-|++ ..+.+|-.|..+|++.|+++- .+......+-.-+++.+.. ..++|-=.-..++++++-..+
T Consensus 5 ~~~al~~L~d--p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d---~DsyVYL~aI~~L~~La~~~p-- 75 (92)
T PF10363_consen 5 LQEALSDLND--PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD---EDSYVYLNAIKGLAALADRHP-- 75 (92)
T ss_pred HHHHHHHccC--CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHHHHCh--
Confidence 3445566654 345799999999999998764 3334444444444444433 456666556667777766543
Q ss_pred ccCCccchHHHHHhcC
Q 005232 120 DWGGGGIVNWLRDEMN 135 (707)
Q Consensus 120 ~W~~~~~i~~l~~~~~ 135 (707)
+ ..++.+++...
T Consensus 76 ---~-~vl~~L~~~y~ 87 (92)
T PF10363_consen 76 ---D-EVLPILLDEYA 87 (92)
T ss_pred ---H-HHHHHHHHHHh
Confidence 2 15666666554
No 160
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.24 E-value=9.1e+02 Score=24.86 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Q 005232 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNV 579 (707)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~ 579 (707)
+.......+..|.+++.|-.+.- ...+..++-.+++.+.++. .|...|+.++..+.+....++..-++.++..
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l--~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~ 174 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESL--NPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQ 174 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777766543210 0256666777778888876 5888888888888877666665544444443
No 161
>PRK10236 hypothetical protein; Provisional
Probab=20.96 E-value=1.7e+02 Score=28.65 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhc---ChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCC
Q 005232 5 NTVKEALNALYHHPDDAVRMQADRWLQ---DFQH---TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDV 72 (707)
Q Consensus 5 ~~v~~al~~ly~~~d~~~r~~A~~~L~---~~q~---s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w 72 (707)
+++...+..+-++.|- +.+..+-|. .|++ .+.-..--|+++.. +.|+||+.++-|.++..+
T Consensus 20 edL~~Lv~~Lt~d~dG--~~R~te~lt~~~~yk~~~~~~~~~~~yw~~Ia~-----elq~fGgnt~~n~lRG~G 86 (237)
T PRK10236 20 EQLANFARLLTHNEKG--KTRLSSVLMRNELFKSMEGHPEQHRRNWQLIAG-----ELQHFGGDSIANKLRGHG 86 (237)
T ss_pred HHHHHHHHHHhcCCCC--CEeehhhhcccHHHHhhcccchhHHHHHHHHHH-----HHHHhcchHHHHHHhcCC
Confidence 4566666666544442 223333333 4555 32222333445553 699999999998887654
No 162
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=20.96 E-value=4.2e+02 Score=24.51 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 005232 18 PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLR 65 (707)
Q Consensus 18 ~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~ 65 (707)
.|+.+.++|.+.|.+...- .-.-|++||...-.+..||-||-..|+
T Consensus 58 ~~~~e~~e~~~lL~~W~~i--~~~~aLeLL~~~f~~~~VR~yAV~~L~ 103 (166)
T cd00870 58 SDEQEVKQALELMPKWAKI--DIEDALELLSPYFTNPVVRKYAVSRLK 103 (166)
T ss_pred CCHHHHHHHHHHHhcCCCC--CHHHHHHHcCccCCCHHHHHHHHHHHH
Confidence 3556666677666665422 233567777643345667777777666
No 163
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=20.85 E-value=4.1e+02 Score=24.75 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 005232 19 DDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLR 65 (707)
Q Consensus 19 d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~ 65 (707)
|+...++|.+.|.+...- ...-|++||...-.+..||-||-..|+
T Consensus 52 ~~~~v~e~~~lL~~W~~i--~~~~aLeLL~~~f~d~~VR~yAV~~L~ 96 (171)
T cd00872 52 KRDDVAQMYQLLKRWPKL--KPEQALELLDCNFPDEHVREFAVRCLE 96 (171)
T ss_pred CHHHHHHHHHHHHCCCCC--CHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 444555555555544321 112355555432334455555555554
No 164
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=20.67 E-value=1.1e+03 Score=25.48 Aligned_cols=48 Identities=10% Similarity=0.150 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHH
Q 005232 652 VHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 702 (707)
Q Consensus 652 ~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~ 702 (707)
..++-+..++..+. |..+..+...+|..+.+.++. .+..|.|+++.++
T Consensus 274 ~FL~el~~il~~~~-~~~f~~i~~~lf~~la~ci~S--~h~qVAErAl~~w 321 (409)
T PF01603_consen 274 LFLNELEEILEVLP-PEEFQKIMVPLFKRLAKCISS--PHFQVAERALYFW 321 (409)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTS--SSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 34556666655442 333444444555555554443 3557777776654
No 165
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=20.40 E-value=1.7e+02 Score=34.03 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHH
Q 005232 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICD 563 (707)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~ 563 (707)
++|.+|..+++++|.... ++ +++.+++-+.+++++++ .|+..|+.|+.++=+
T Consensus 104 ~N~~iR~~AlR~ls~l~~-----~e---l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 104 PNEEIRGFALRTLSLLRV-----KE---LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred CCHHHHHHHHHHHHhcCh-----HH---HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 489999999999997642 43 88899999999998875 499999999998764
No 166
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=20.32 E-value=2.1e+02 Score=19.99 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 005232 78 EAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALA 113 (707)
Q Consensus 78 ~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~ 113 (707)
.+...+|+-+++++.. ..+..+.+|.-+|+++.
T Consensus 3 ~~~eYLKNvl~~fl~~---~~~~~~~~llpvi~tlL 35 (46)
T PF01465_consen 3 INLEYLKNVLLQFLES---REPSEREQLLPVIATLL 35 (46)
T ss_dssp HHHHHHHHHHHHHHTT---SS---HHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHH
Confidence 3567899999998877 44678888998988864
No 167
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.17 E-value=1.2e+03 Score=25.74 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=72.0
Q ss_pred hHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHH-HHHHHhhccCCCCCChhhHHHHHHHHHHHHh
Q 005232 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYN-VYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (707)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (707)
.+..++..+.....+|. .++..|+..+.+..+.|.+....|...++. .+..+..+ .+.+.....|.++..+..
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~-----~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDD-----LNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHHH
Confidence 67888888887777775 588899999999998887777777666664 44445432 447788999999999988
Q ss_pred cCChHHHHHHHHHhhhhhHHHHHHHHhcCC
Q 005232 610 ELPQVDAKKALEMLCLPVVTPLQEIINQGP 639 (707)
Q Consensus 610 ~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~ 639 (707)
.... ..+.+++-++.-++.+.....+
T Consensus 330 ~~~~----~~l~~~~l~ialrlR~l~~se~ 355 (533)
T KOG2032|consen 330 KASN----DDLESYLLNIALRLRTLFDSED 355 (533)
T ss_pred hhhh----cchhhhchhHHHHHHHHHHhcC
Confidence 8654 3455556667777777766543
No 168
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=20.10 E-value=8.9e+02 Score=24.27 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=85.9
Q ss_pred CCCcchhhHHHHHHHHhhccCCcc--ccccHHHHHhhcC-CCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 005232 464 HNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLP-KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (707)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~--~~~~l~~l~~~l~-~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l 540 (707)
+.++..++-++.+++.+-+.++.+ ....+..++++.. ++..++.+..+ +..+.+..+. ...+. .....++..+
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~-~~~~~--~~~~~i~~~l 85 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKM-KNFSP--ESAVKILRSL 85 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhC-cCCCh--hhHHHHHHHH
Confidence 467888899999999999998865 2334566666554 46555554443 4444443321 11111 2566777777
Q ss_pred HhccCCCh---HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCC
Q 005232 541 TSGMSTSE---DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (707)
Q Consensus 541 ~~~l~~~~---~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p 612 (707)
++..+.+. ..+..+-.-+..+.+..+..+...-+.++..+.++..++ =++..-..+++-+-.+++..+
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gE----kDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGE----KDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHhcc
Confidence 76555432 255566666677777766667666667777777777664 245555666666666666655
No 169
>KOG4820 consensus Involved in anesthetic response in C.elegans [General function prediction only]
Probab=20.05 E-value=2.4e+02 Score=30.80 Aligned_cols=104 Identities=18% Similarity=0.301 Sum_probs=55.1
Q ss_pred HHHHhhHHHHhh---CCCC---chhHHHHHHHHHhccCCCh---HHHHHHHHHHHHHHH---------HhhhhhcCCHHH
Q 005232 514 LTIGAYSKWFDA---ASSD---PSILASVLSILTSGMSTSE---DTAAAAALAFRHICD---------DCRKKLCGYLDG 575 (707)
Q Consensus 514 ~~ig~~~~~l~~---~p~~---~~~l~~~l~~l~~~l~~~~---~v~~~Aa~al~~l~~---------~c~~~l~~~~~~ 575 (707)
..+|||+-|+-. -|.. .+.+..+++.++..++... +-+.+--.++.++-. .|+-+-.-++..
T Consensus 460 q~LgRfGiWLlaG~C~Pnada~~eaiGrIlqmlF~WFhtTA~~~daagqmeasiEkLKtD~VcdWikd~cRiH~~VFISc 539 (933)
T KOG4820|consen 460 QMLGRFGIWLLAGLCPPNADADPEAIGRILQMLFEWFHTTALLPDAAGQMEASIEKLKTDFVCDWIKDGCRIHNAVFISC 539 (933)
T ss_pred HHHhhhhHhheeccCCCCCCCCHHHHHHHHHHHHHHHhhhhcCcCchhhhhhhHHHHhhHHHHHHHHHHHhHhhhhhhhh
Confidence 478999999863 1211 2478888888887776532 012222233443322 334333333433
Q ss_pred HHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 005232 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (707)
Q Consensus 576 l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~ 617 (707)
+...+.+--..++-+..-.+...++-||+|+++.-+|.+-+.
T Consensus 540 L~~~~~E~a~~gghwe~lasr~dhiKEGL~RLi~LmPYdVIs 581 (933)
T KOG4820|consen 540 LCGECEEQAGRGGHWEPLASRIDHIKEGLGRLIALMPYDVIS 581 (933)
T ss_pred hcCCChhhcCcCCCccchHHHHHHHHHHHhhhhhhcchhhhh
Confidence 333333222222212111334567889999999999987543
Done!