Query 005232
Match_columns 707
No_of_seqs 191 out of 1382
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 19:21:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibv_A Exportin-T; karyopherin 100.0 2.4E-73 8.1E-78 671.9 56.7 649 4-707 5-730 (980)
2 4hat_C Exportin-1; heat repeat 100.0 1.1E-70 3.9E-75 648.8 45.3 641 4-706 15-731 (1023)
3 2x19_B Importin-13; nuclear tr 100.0 1E-66 3.4E-71 627.2 64.5 649 3-706 22-713 (963)
4 3gjx_A Exportin-1; transport, 100.0 1.3E-68 4.3E-73 626.8 46.4 665 4-706 27-757 (1073)
5 2x1g_F Cadmus; transport prote 100.0 5.4E-68 1.9E-72 638.0 49.1 647 4-706 6-721 (971)
6 3m1i_C Exportin-1; heat repeat 100.0 1.4E-58 4.8E-63 558.4 47.7 648 3-697 14-747 (1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 1.4E-55 4.8E-60 533.9 47.7 642 4-699 10-796 (1204)
8 1wa5_C Importin alpha RE-expor 100.0 3.9E-40 1.3E-44 394.3 47.9 604 1-704 1-671 (960)
9 4fdd_A Transportin-1; heat rep 100.0 3.4E-33 1.2E-37 330.9 44.8 554 3-686 11-579 (852)
10 2bpt_A Importin beta-1 subunit 100.0 1.4E-30 4.9E-35 309.3 48.1 589 1-704 1-624 (861)
11 1qgr_A Protein (importin beta 100.0 1.1E-27 3.7E-32 285.0 43.0 586 6-704 2-634 (876)
12 1ibr_B P95, importin beta-1 su 99.9 2.6E-25 9E-30 244.2 25.7 432 6-545 2-461 (462)
13 1u6g_C TIP120 protein, CAND1; 99.6 2.5E-12 8.6E-17 158.0 35.8 544 4-705 5-596 (1230)
14 1b3u_A Protein (protein phosph 99.3 2.5E-08 8.5E-13 112.2 41.5 562 5-705 10-585 (588)
15 4fdd_A Transportin-1; heat rep 99.2 7.1E-07 2.4E-11 105.2 49.9 515 7-613 216-788 (852)
16 2bpt_A Importin beta-1 subunit 99.2 4.7E-07 1.6E-11 106.8 46.1 332 290-705 349-709 (861)
17 1qgr_A Protein (importin beta 99.1 1.4E-06 4.6E-11 103.0 46.7 618 16-704 138-824 (876)
18 1b3u_A Protein (protein phosph 99.1 8.1E-08 2.8E-12 108.0 33.3 482 7-607 88-585 (588)
19 1u6g_C TIP120 protein, CAND1; 99.0 1.8E-06 6.3E-11 105.9 41.9 505 6-613 86-683 (1230)
20 2vgl_B AP-2 complex subunit be 98.3 0.00023 8E-09 79.8 29.5 462 14-605 57-528 (591)
21 2qk1_A Protein STU2; STU2P, XM 98.2 6.2E-05 2.1E-09 74.1 19.4 187 464-665 27-223 (249)
22 2qk2_A LP04448P; mini spindles 98.2 1.1E-05 3.7E-10 79.4 11.7 178 464-665 26-208 (242)
23 1wa5_C Importin alpha RE-expor 97.8 0.0024 8.1E-08 76.0 26.2 161 466-628 471-647 (960)
24 1w63_A Adapter-related protein 97.8 0.079 2.7E-06 59.3 40.2 458 17-606 81-574 (618)
25 1ibr_B P95, importin beta-1 su 97.7 0.0013 4.5E-08 70.8 19.9 256 429-705 109-393 (462)
26 4b8j_A Importin subunit alpha- 97.6 0.089 3.1E-06 57.6 32.6 382 223-704 76-493 (528)
27 2x1g_F Cadmus; transport prote 97.5 0.043 1.5E-06 65.3 31.0 224 429-663 563-815 (971)
28 2qk1_A Protein STU2; STU2P, XM 97.4 0.0024 8.2E-08 62.7 15.1 165 465-636 73-247 (249)
29 2jdq_A Importin alpha-1 subuni 97.4 0.044 1.5E-06 58.4 26.5 220 465-705 204-441 (450)
30 1wa5_B Importin alpha subunit; 97.4 0.044 1.5E-06 60.2 26.2 216 465-706 269-509 (530)
31 1wa5_B Importin alpha subunit; 97.2 0.1 3.6E-06 57.1 26.2 330 193-611 102-459 (530)
32 2vgl_B AP-2 complex subunit be 96.9 0.39 1.3E-05 53.3 28.0 157 429-613 338-497 (591)
33 2jdq_A Importin alpha-1 subuni 96.8 0.2 6.8E-06 53.2 24.4 333 193-610 35-391 (450)
34 2qk2_A LP04448P; mini spindles 96.8 0.056 1.9E-06 52.4 17.5 172 504-703 27-201 (242)
35 1w63_A Adapter-related protein 96.6 0.49 1.7E-05 52.8 26.4 59 9-70 110-172 (618)
36 4b8j_A Importin subunit alpha- 96.6 0.33 1.1E-05 53.0 24.5 330 193-611 89-445 (528)
37 2x19_B Importin-13; nuclear tr 96.5 0.93 3.2E-05 53.5 29.4 257 429-706 547-845 (963)
38 3ibv_A Exportin-T; karyopherin 96.4 0.12 4E-06 61.1 19.7 83 548-639 715-797 (980)
39 2vgl_A Adaptor protein complex 96.3 1.9 6.4E-05 48.1 35.9 126 429-565 424-552 (621)
40 2z6g_A B-catenin; FULL-length, 96.2 2.6 9E-05 48.3 32.4 257 11-301 155-428 (780)
41 3tpo_A Importin subunit alpha- 96.1 2 6.9E-05 46.7 26.9 215 465-703 263-493 (529)
42 3ul1_B Importin subunit alpha- 95.2 3.7 0.00013 44.4 24.4 134 465-610 286-431 (510)
43 2iw3_A Elongation factor 3A; a 94.9 0.039 1.3E-06 64.0 7.8 243 429-703 72-320 (986)
44 2of3_A ZYG-9; multifunctional 94.7 0.57 1.9E-05 45.6 14.4 138 327-524 98-239 (266)
45 4hxt_A De novo protein OR329; 94.7 0.73 2.5E-05 44.1 15.6 214 465-705 14-239 (252)
46 3tpo_A Importin subunit alpha- 94.5 6.6 0.00022 42.6 25.5 131 465-610 305-450 (529)
47 4db8_A Armadillo-repeat protei 94.2 0.7 2.4E-05 44.5 14.2 215 465-705 24-249 (252)
48 3ul1_B Importin subunit alpha- 94.2 7.5 0.00026 41.9 27.8 213 465-704 244-475 (510)
49 2vgl_A Adaptor protein complex 93.8 2 6.9E-05 47.8 18.5 112 466-586 124-239 (621)
50 1xqr_A HSPBP1 protein; armadil 93.5 5.5 0.00019 39.5 19.3 210 469-705 56-285 (296)
51 3u0r_A Apoptosis inhibitor 5; 93.3 2.6 8.8E-05 44.2 16.6 173 505-706 41-249 (507)
52 2iw3_A Elongation factor 3A; a 92.7 0.56 1.9E-05 54.5 11.8 172 429-610 115-325 (986)
53 1xqr_A HSPBP1 protein; armadil 92.2 3.9 0.00013 40.6 16.1 194 487-706 25-237 (296)
54 4db6_A Armadillo repeat protei 92.2 0.29 1E-05 45.8 7.5 137 464-611 23-169 (210)
55 1w9c_A CRM1 protein, exportin 92.0 3.7 0.00013 40.9 15.2 145 194-348 45-199 (321)
56 3ltm_A Alpha-REP4; protein eng 91.4 3.7 0.00013 38.1 14.3 109 464-607 30-139 (211)
57 1oyz_A Hypothetical protein YI 91.3 11 0.00039 36.5 21.9 212 8-246 26-248 (280)
58 3ltj_A Alpharep-4; protein eng 91.1 2.5 8.7E-05 38.9 12.7 108 465-607 57-165 (201)
59 1oyz_A Hypothetical protein YI 90.6 13 0.00044 36.0 19.6 177 464-704 102-279 (280)
60 4hxt_A De novo protein OR329; 90.4 7.6 0.00026 36.7 15.9 219 9-251 6-244 (252)
61 3gjx_A Exportin-1; transport, 89.7 26 0.00088 41.4 22.1 169 194-386 753-930 (1073)
62 4db6_A Armadillo repeat protei 89.5 4.2 0.00014 37.5 12.9 132 465-608 66-208 (210)
63 4db8_A Armadillo-repeat protei 89.5 0.75 2.6E-05 44.3 7.7 134 465-610 66-210 (252)
64 3ltm_A Alpha-REP4; protein eng 89.4 4 0.00014 37.8 12.6 108 465-607 62-170 (211)
65 4hat_C Exportin-1; heat repeat 89.0 3 0.0001 49.3 13.5 163 504-685 465-641 (1023)
66 3m1i_C Exportin-1; heat repeat 87.9 3.2 0.00011 49.4 13.2 159 504-681 465-637 (1049)
67 2z6h_A Catenin beta-1, beta-ca 87.4 39 0.0013 37.4 36.7 257 11-301 19-292 (644)
68 2z6h_A Catenin beta-1, beta-ca 86.2 45 0.0015 36.9 35.0 135 466-613 196-340 (644)
69 2z6g_A B-catenin; FULL-length, 85.3 21 0.00072 40.7 17.7 97 464-563 410-518 (780)
70 4atg_A TAF6; transcription, TF 81.3 32 0.0011 31.4 14.2 157 447-633 10-178 (196)
71 3nmw_A APC variant protein; AR 77.1 47 0.0016 33.6 15.0 219 468-704 47-289 (354)
72 1vsy_4 Proteasome activator BL 74.7 1.2E+02 0.0041 34.4 25.4 259 429-706 359-686 (799)
73 1xm9_A Plakophilin 1; armadill 73.5 68 0.0023 33.6 15.8 125 492-631 4-136 (457)
74 1jdh_A Beta-catenin; beta-cate 72.5 1E+02 0.0035 32.6 36.5 135 466-613 199-343 (529)
75 4atg_A TAF6; transcription, TF 70.5 64 0.0022 29.4 13.6 132 441-579 37-179 (196)
76 4ffb_C Protein STU2; tubulin f 70.0 19 0.00066 34.9 9.8 183 464-665 20-215 (278)
77 3oc3_A Helicase MOT1, MOT1; re 66.6 45 0.0016 35.8 11.7 102 468-586 243-345 (800)
78 4ady_A RPN2, 26S proteasome re 65.0 1.4E+02 0.0047 34.5 16.3 103 470-585 595-698 (963)
79 1jdh_A Beta-catenin; beta-cate 63.7 1.5E+02 0.0051 31.2 37.1 258 9-301 20-295 (529)
80 3ltj_A Alpharep-4; protein eng 62.0 65 0.0022 28.9 11.3 56 9-67 79-134 (201)
81 2db0_A 253AA long hypothetical 54.2 1.3E+02 0.0043 27.3 14.7 126 467-610 121-247 (253)
82 3nmw_A APC variant protein; AR 52.8 1.2E+02 0.0042 30.5 12.3 142 465-613 183-338 (354)
83 3nmz_A APC variant protein; pr 52.5 1.6E+02 0.0055 30.9 13.5 183 505-704 213-405 (458)
84 3tt9_A Plakophilin-2; cell adh 51.9 1.6E+02 0.0053 27.7 16.1 108 491-609 9-124 (233)
85 1te4_A Conserved protein MTH18 49.4 53 0.0018 27.3 7.7 55 10-67 46-100 (131)
86 1xm9_A Plakophilin 1; armadill 48.6 95 0.0033 32.5 11.2 112 466-582 57-196 (457)
87 4ady_A RPN2, 26S proteasome re 48.6 1.1E+02 0.0038 35.3 12.0 53 550-613 628-680 (963)
88 3tt9_A Plakophilin-2; cell adh 47.0 81 0.0028 29.7 9.2 135 465-606 64-226 (233)
89 3tjz_B Coatomer subunit gamma; 46.5 23 0.00079 35.9 5.6 97 465-574 80-179 (355)
90 2db0_A 253AA long hypothetical 46.4 1.7E+02 0.0058 26.5 11.3 118 429-562 127-245 (253)
91 3nmz_A APC variant protein; pr 42.7 1.1E+02 0.0039 32.0 10.5 141 465-612 299-453 (458)
92 4ffb_C Protein STU2; tubulin f 40.9 2.4E+02 0.0083 26.8 12.2 135 467-613 69-216 (278)
93 3now_A UNC-45 protein, SD10334 38.2 4.9E+02 0.017 29.5 37.6 254 429-705 224-522 (810)
94 1te4_A Conserved protein MTH18 35.6 75 0.0026 26.3 6.4 53 11-66 78-130 (131)
95 3l6x_A Catenin delta-1; cateni 35.5 4.6E+02 0.016 28.4 17.2 198 492-704 50-267 (584)
96 3opb_A SWI5-dependent HO expre 34.1 5.4E+02 0.019 28.8 35.8 138 465-610 469-636 (778)
97 2of3_A ZYG-9; multifunctional 31.6 3.5E+02 0.012 25.8 21.1 164 52-251 58-239 (266)
98 3opb_A SWI5-dependent HO expre 27.3 3.7E+02 0.013 30.1 11.7 154 472-638 578-759 (778)
99 3grl_A General vesicular trans 24.0 7.3E+02 0.025 27.1 15.6 96 465-567 34-155 (651)
100 3a6p_A Exportin-5; exportin-5, 23.0 7.7E+02 0.026 29.3 14.4 139 532-681 530-676 (1204)
101 2jak_A Serine/threonine-protei 21.0 5E+02 0.017 26.4 10.3 28 315-342 337-364 (392)
102 3b2a_A TON_1937, putative unch 20.5 3.6E+02 0.012 25.4 8.2 122 473-610 95-219 (265)
No 1
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=2.4e-73 Score=671.88 Aligned_cols=649 Identities=15% Similarity=0.234 Sum_probs=519.9
Q ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCC-ChhHHHHHHHHHHhhhhcCCCCCChh---
Q 005232 4 QNTVKEALNALYH-HPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATS-NLETLIFCSQTLRSKVQRDVEELPSE--- 78 (707)
Q Consensus 4 ~~~v~~al~~ly~-~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~-~~~v~~faa~~L~~ki~~~w~~l~~~--- 78 (707)
.++|.+||+..|+ ++|++.|++|++||++||++|++|++|..||.+++. +.++||||+++|+++|+ .+|++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~~ 80 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESNL 80 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTSH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhhH
Confidence 6789999965555 459999999999999999999999999999986433 78999999999999999 78999
Q ss_pred -hHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC--chhHHHHHhccchh
Q 005232 79 -AVRGLQDSLNTLLKKFH--KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLPE 153 (707)
Q Consensus 79 -~~~~lr~~Ll~~l~~~~--~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~--~~~~~L~~L~~L~E 153 (707)
++..+|+.|++++.+.+ .++++|++|||.+++.++++++|..||+ +++++++.++++.. ....+|.+|..|+|
T Consensus 81 ~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~--~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 81 LELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND--FFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch--HHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 99999999999999854 3688999999999999999999999999 99999998875422 34456666666779
Q ss_pred hcccccccCCh---HHHHHHHHHHHHh-----hHHHHHHHHHhhh--hhHHHHHHHHHHHHHHhccCCCCCcccccchhH
Q 005232 154 EVFNYKIAARP---ERRRQFEKELTSQ-----MEVALSTLTACLH--INELKEQVLEAFASWLRLKHRIPGSVLASHPLV 223 (707)
Q Consensus 154 E~~~~~~~~~~---~~r~~~~~~l~~~-----~~~Vl~~l~~~l~--~~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll 223 (707)
|+.+.++..+. .|+.++++.++.+ .+.+++++.++.. ++++...+|+|+.+|+.| +|.+.+.+.+++
T Consensus 159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll 235 (980)
T 3ibv_A 159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCM 235 (980)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHH
T ss_pred HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHH
Confidence 99876543332 4556778888776 6667777777654 346889999999999997 677777778999
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHh---ccCCCCHHHHHHHHHHHHHHh
Q 005232 224 LTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL---TDSSKDEEDVKAIARLFADMG 300 (707)
Q Consensus 224 ~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l---~~~~~d~~~~~~l~~l~~~l~ 300 (707)
+.+|+.|.+++++++|++||++++++++. ++++.+++..+ ++.+.+ ..+++|.|..+++|++++++|
T Consensus 236 ~~l~~~L~~~~~r~~A~ecL~ei~~k~~~-----~~~k~~li~~l-----~L~~~~~~l~~~~~D~d~~~~la~L~~~~g 305 (980)
T 3ibv_A 236 NLLYSFLQIEELRCAACETMTEIVNKKMK-----PLEKLNLLNIL-----NLNLFFSKSQEQSTDPNFDEHVAKLINAQG 305 (980)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHH-----HHHHHHCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHcCCC-----hhhHHHHHHHH-----hHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998752 33456666543 222222 222678889999999999999
Q ss_pred hHHHHHHHcCC------------cchHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHH
Q 005232 301 DSYVELIATGS------------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSR 368 (707)
Q Consensus 301 e~~~~~i~~~~------------~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 368 (707)
+.+... .+.+ +.+..+++++|.|++|++++|+..+++||+.+.+.+.+.+. . ..
T Consensus 306 e~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~------~-------~~ 371 (980)
T 3ibv_A 306 VELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS------S-------KE 371 (980)
T ss_dssp HHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT------S-------CC
T ss_pred HHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc------c-------cc
Confidence 999888 6554 34568899999999999999999999999998876543110 0 01
Q ss_pred HHHhhHHHHHHHHHHHHhhccCCCCCCCCCh----hhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHH
Q 005232 369 RLQVFRSAYESLVSLVSFRVQYPQDYQDLSL----EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDA 444 (707)
Q Consensus 369 ~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~----d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~ 444 (707)
..+.++|++.++++++++||+||++. +|++ ||.++|.+||++ ++ ++.+++.++|++.
T Consensus 372 ~~~~~~~~l~~Ll~~li~k~~yp~d~-~~~~~~d~ed~~~F~e~Rk~-----------------l~-~l~d~~~~l~~~~ 432 (980)
T 3ibv_A 372 LSASLKEFLKSLLEAIIKKMKYDESQ-EWDDDPDSEEEAEFQEMRKK-----------------LK-IFQDTINSIDSSL 432 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCCTTC-CCCCCSSSSTHHHHHHHHHH-----------------HH-HHHHHHHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHccCCCcc-ccccccchhHHHHHHHHHHH-----------------HH-HHHHHHHhcChHH
Confidence 23578999999999999999999874 3544 678899999999 88 8999999999999
Q ss_pred HHHHHHHHHHHHHhhcC--CCCCCcchhhHHHHHHHHhhccCCcc------ccccHHHHHhhcCCC-------CChHHHH
Q 005232 445 TLKILYIKFVEGVACCG--NKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKL-------PQQPQLL 509 (707)
Q Consensus 445 ~l~~l~~~l~~~~~~~~--~~~~~w~~~Ea~l~~l~~ia~~~~~~------~~~~l~~l~~~l~~l-------~~~~~l~ 509 (707)
++.++++.+...+.+.. ..+.+|+++||+||+++++||++... +++.+|.+++++..+ ++||+||
T Consensus 433 ~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~ 512 (980)
T 3ibv_A 433 FSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQ 512 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 99966655554433211 11357999999999999999998852 335667777665432 4699999
Q ss_pred HHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh--ccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhc
Q 005232 510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTS--GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (707)
Q Consensus 510 ~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~--~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~ 586 (707)
.++++++|||++|+..||+ +++++|++++. |+++++ .++.+||+||.+||++|+++|.||++.+++.+..++..
T Consensus 513 ~~~~~~l~rys~~~~~~~~---~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~ 589 (980)
T 3ibv_A 513 LLYMEILVRYASFFDYESA---AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNI 589 (980)
T ss_dssp HHHHHHHHHTGGGGGTCCT---THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCC
T ss_pred HHHHHHHHHHHHHHhcCch---hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcC
Confidence 9999999999999999997 99999999999 998763 49999999999999999999999999999999998774
Q ss_pred cCCCCC----------------ChhhHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhhhHHHHHHHHhcCCCccccc-Cc
Q 005232 587 EGSLKV----------------SAEDSLHLVEALSMVITEL--PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK-HP 647 (707)
Q Consensus 587 ~~~~~l----------------~~~~~~~l~eai~~vi~~~--p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~-~~ 647 (707)
.....- +.+++.+++||+|.+++.. |+++...++..++.|++++++++++...++..+. ..
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i 669 (980)
T 3ibv_A 590 SVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISV 669 (980)
T ss_dssp CCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHH
T ss_pred cCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHH
Confidence 210000 1347999999999999875 6778889999999999999999998654321110 11
Q ss_pred hhhhHHHHHHHHHhhhcC-CcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhhhhC
Q 005232 648 RDLTVHIDRFAYIFRYVN-HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVS 707 (707)
Q Consensus 648 ~~~~~~i~~l~~~~~~~~-~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~~~ 707 (707)
.+...++.+++..|+..+ .++|+..+++++|+++..++++|.++..|.|++|++++++|+
T Consensus 670 ~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~ 730 (980)
T 3ibv_A 670 YCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN 730 (980)
T ss_dssp HHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 133344566666665443 357899999999999999999999999999999999999874
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.1e-70 Score=648.78 Aligned_cols=641 Identities=14% Similarity=0.210 Sum_probs=518.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 005232 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (707)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (707)
.+.+++||.++|+++++ .|++|++||++||++|++|.+|..||+. +.++++|||||++|+++|+++|+.+|++++..+
T Consensus 15 v~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~I 92 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1023)
T ss_dssp HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 57899999999987655 8999999999999999999999999976 667899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhccchhhccc
Q 005232 84 QDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (707)
Q Consensus 84 r~~Ll~~l~~~~~~------~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~~~~~~L~~L~~L~EE~~~ 157 (707)
|+.+++++.+++.+ ++.+++|||.+++.++.+++|+.||+ +++++++.+++++..+.++|.+|+.|+||+.+
T Consensus 93 r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~--~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~ 170 (1023)
T 4hat_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE--FIPELIGSSSSSVNVCENNMIVLKLLSEEVFD 170 (1023)
T ss_dssp HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987533 57899999999999999999999999 99999999987666788999999999999876
Q ss_pred c-cccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhccCCCCCcccccchhHHHHH-hcCCC
Q 005232 158 Y-KIAARPERRRQFEKELTSQMEVALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTAL-SSLHS 232 (707)
Q Consensus 158 ~-~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~---~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~-~~L~~ 232 (707)
. +..++..||..+++.|...++.|++++..++..+ ++...+|+|+.+|+.| +|.+.+.++++++.+| ..|.+
T Consensus 171 ~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~~ 247 (1023)
T 4hat_C 171 FSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMTS 247 (1023)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHHS
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcCC
Confidence 3 2335678889999999999999999999999753 6888999999999998 6777777889999999 99999
Q ss_pred CccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhH------------hhhHHHhccC-CCCHHHHHHHHHHHHHH
Q 005232 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQI------------MSLKAHLTDS-SKDEEDVKAIARLFADM 299 (707)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v------------~~l~~~l~~~-~~d~~~~~~l~~l~~~l 299 (707)
++++++|++||++++++.... +.....+.+..+++.+ ..+.+.+..+ ++|++.++++|++|+++
T Consensus 248 ~~~r~~A~ecL~eIv~~~~~~---~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~ 324 (1023)
T 4hat_C 248 PDTRAITLKCLTEVSNLKIPQ---DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCCCS---SCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCC---chHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHH
Confidence 999999999999999743210 1001122333333332 2344455444 34678899999999999
Q ss_pred hhHHHHHHHcCCcchH----HHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHH
Q 005232 300 GDSYVELIATGSDESM----LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS 375 (707)
Q Consensus 300 ~e~~~~~i~~~~~~~~----~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (707)
|+++...+.+++ ++. ..++.|+.|+.+++.++..++|+||+.|.+.++..+ .+...|+|
T Consensus 325 ~e~~~~li~~~~-~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~----------------~~~~~~~~ 387 (1023)
T 4hat_C 325 LARNRALLESDE-SLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEP----------------LKKHIYEE 387 (1023)
T ss_dssp HHHHGGGGTSCG-GGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTST----------------TTGGGGHH
T ss_pred HHHHHHHHhCCc-chhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhch----------------HHHHHHHH
Confidence 999999887653 333 345689999999999999999999999999876421 13468999
Q ss_pred HHHHHHHHHHhhccCCCC-------CCCC------ChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcCh
Q 005232 376 AYESLVSLVSFRVQYPQD-------YQDL------SLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG 442 (707)
Q Consensus 376 ~~~~ll~~l~~k~~~p~d-------~~~~------~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~ 442 (707)
+|.+|+.++++||+||++ ..+| +.|+.+.|+.+| |+|.+++.+.|
T Consensus 388 ~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R---------------------d~L~~l~~l~~- 445 (1023)
T 4hat_C 388 ICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER---------------------EVLVYLTHLNV- 445 (1023)
T ss_dssp HHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH---------------------HHHHHHHHHCH-
T ss_pred HHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH---------------------HHHHHHhccCH-
Confidence 999999999999999982 2345 445566666665 47788888888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCcc-ccccHHHHHhhcCCCCC-------hHHHHHHHHH
Q 005232 443 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQ-------QPQLLQTVCL 514 (707)
Q Consensus 443 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~l~~-------~~~l~~t~~~ 514 (707)
+.+++++.+.+.+.+.. +..+|+.+||++|++++|++++.++ ++++++++++.|.+++. +++++.|+|+
T Consensus 446 ~~~~~~~~~~l~~~l~~---~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~ 522 (1023)
T 4hat_C 446 IDTEEIMISKLARQIDG---SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMY 522 (1023)
T ss_dssp HHHHHHHHHHHHHHHSS---TTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHH
Confidence 56999999998776531 1368999999999999999999876 67889999988766542 4678899999
Q ss_pred HHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhhhhh--------cCCHHHHHHHHHHHhh
Q 005232 515 TIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKL--------CGYLDGLYNVYRTAVN 585 (707)
Q Consensus 515 ~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~c~~~l--------~~~~~~l~~~~~~~~~ 585 (707)
++|+|++|+..||+ ++++++++++.++.++ +.++.+||.||.+||++|+.++ .||++++++.+..+..
T Consensus 523 ~lGry~~wl~~~~~---~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~ 599 (1023)
T 4hat_C 523 VVGQYPRFLKAHWN---FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA 599 (1023)
T ss_dssp HHHTCHHHHHHCHH---HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHhccHH---HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH
Confidence 99999999999996 9999999999999654 2499999999999999999988 4799999999988876
Q ss_pred ccCCCCCChhhHHHHHHHHHHHHhcCChHH-HHHHHHHhhhhhHHHHHHHHhcCCCcccc----cCchhhhHHHHHHHHH
Q 005232 586 GEGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQK----KHPRDLTVHIDRFAYI 660 (707)
Q Consensus 586 ~~~~~~l~~~~~~~l~eai~~vi~~~p~~~-~~~~l~~l~~p~~~~L~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~ 660 (707)
+++.+.+..+++|+|.+++++|++. ...++..++.|+.+.++++.++...+++- +..+.+...++.++.+
T Consensus 600 -----~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v 674 (1023)
T 4hat_C 600 -----DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAV 674 (1023)
T ss_dssp -----TSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHH
T ss_pred -----hCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999876 66899999999999999998743222110 0122333344555555
Q ss_pred hhhcCCcccHHHHHHHHhHHHHHHHHhhcCch--------hH-----HHHHHHHHhhhh
Q 005232 661 FRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM--------RT-----MESLCRACKYAV 706 (707)
Q Consensus 661 ~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~--------~v-----~e~~c~~~~~~~ 706 (707)
.+++ .+++.+.++.+||.+-.+.+.+.... .+ ..+.||++|+.|
T Consensus 675 ~~~l--g~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~i 731 (1023)
T 4hat_C 675 CTSM--GADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEI 731 (1023)
T ss_dssp HHHH--GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHH
T ss_pred HHHh--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHH
Confidence 5544 57889999999999988887764321 12 337889888764
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1e-66 Score=627.19 Aligned_cols=649 Identities=23% Similarity=0.408 Sum_probs=544.0
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHH
Q 005232 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (707)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~ 82 (707)
..++|.++++++|+++|++.|++|+++|++||++|++|.+|..||.+ +.+.++|||||++||++|+++|+.+|++++..
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 100 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASALHIKISRYWSDIPTDQYES 100 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHH
Confidence 46789999999998899999999999999999999999999999985 67889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC------CCCchhHHHHHhccchhhcc
Q 005232 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS------HPEFVPGFLELLTVLPEEVF 156 (707)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~------~~~~~~~~L~~L~~L~EE~~ 156 (707)
+|+.|++++..+..+++.|++|+|.+++.|+.+++|+.||+ +++++++.+++ ++.....++.+|+.++||+.
T Consensus 101 ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 101 LKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPC--AVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccch--HHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHh
Confidence 99999999999765689999999999999999999989998 99999998875 22357899999999999987
Q ss_pred cccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh----HHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCC
Q 005232 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS 232 (707)
Q Consensus 157 ~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~----~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~ 232 (707)
+.+. +..+|..+++.+..+++.|++++..++... .+...+++|+.+|+..+ .+. ....++++.+|+.+.+
T Consensus 179 ~~~~--~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~--~~~--~~~~~ll~~l~~~l~~ 252 (963)
T 2x19_B 179 TSRL--PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VPL--QDCEALIQAAFAALQD 252 (963)
T ss_dssp TCCC-----------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSS--CCG--GGTHHHHHHHHHHTTS
T ss_pred cccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCC--CCc--ccchHHHHHHHHHhCC
Confidence 7654 456778888888889999999999988653 38889999999999853 322 2357899999999999
Q ss_pred CccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhc--cCCCCHHHHHHHHHHHHHHhhHHHHHHHcC
Q 005232 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLT--DSSKDEEDVKAIARLFADMGDSYVELIATG 310 (707)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~--~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~ 310 (707)
++.+++|++|+.+++...... ...+.+..+++.++.+.+.+. ...+|.+.++.+|++++++++.+...+.++
T Consensus 253 ~~~~~~a~~~l~~i~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~ 326 (963)
T 2x19_B 253 SELFDSSVEAIVNAISQPDAQ------RYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQ 326 (963)
T ss_dssp TTTHHHHHHHHHHHHTCTTGG------GCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHcccccc------cCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 999999999999999854211 235667777777766543332 124567889999999999999999888753
Q ss_pred ---CcchHHHHHHHhhhcccC-----chhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHH
Q 005232 311 ---SDESMLIVHALLEVASHP-----EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVS 382 (707)
Q Consensus 311 ---~~~~~~~~~~ll~~~~~~-----~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 382 (707)
++.+..++++++.++.+| +++++..+++||+.+.+.....+ + ..+......++|++.+++.
T Consensus 327 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~------~-----~~~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 327 VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFE------A-----EKQAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSC------H-----HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhh------h-----hhhHHHHHHHHHHHHHHHH
Confidence 346778899999999874 57889999999999998654211 0 0112456788999999999
Q ss_pred HHHhhccCCCC--CCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhc
Q 005232 383 LVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (707)
Q Consensus 383 ~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (707)
+++.++.||+| +++|++||.++|++||++ ++|++.+++.++| +.+++.+.+.+.+.+.+.
T Consensus 396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~-----------------~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~ 457 (963)
T 2x19_B 396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD-----------------ISDTLMYVYEMLG-AELLSNLYDKLGRLLTSS 457 (963)
T ss_dssp HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHH-----------------HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCcccccCCChhHHHHHHHHHHH-----------------HHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhc
Confidence 99999999986 346787878899999999 9999999999999 668888888887766332
Q ss_pred CCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 005232 461 GNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (707)
Q Consensus 461 ~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~ 539 (707)
.+ ..+|+.+||++|+++++++++..+++++++++++.+++++ .||.||.++++++|+|++|+..||+ +++++++.
T Consensus 458 ~~-~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~---~l~~vl~~ 533 (963)
T 2x19_B 458 EE-PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV---MINSVLPL 533 (963)
T ss_dssp CC-SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH---HHTTTHHH
T ss_pred CC-CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH---HHHHHHHH
Confidence 12 4689999999999999999998877788999999888776 5899999999999999999999885 99999999
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 005232 540 LTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 619 (707)
Q Consensus 540 l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~ 619 (707)
++.+++++. |+.+|+.||.+||++|++.+.||++.+++.+..++..+ .++.+.+..+++|+|.++.++|.++..++
T Consensus 534 l~~~l~~~~-V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~---~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTCGG-GHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999998876 99999999999999999999999999999999988753 36788999999999999999987788899
Q ss_pred HHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC--------------------cccHHHHHHHHhH
Q 005232 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH--------------------PEAVADAIQRLWP 679 (707)
Q Consensus 620 l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--------------------~~p~~~~~~~~~p 679 (707)
+..++.|+.+.++++.++.. +..........++.++.+++.+.. ++|+..+.+.+||
T Consensus 610 ~~~l~~~l~~~l~~~~~~~~---~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 610 LHSLISPYIQQLEKLAEEIP---NPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHHHHHHHHHHHHHHSSCS---CHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 99999999999999876432 111233455788999999998862 3678999999999
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHhhhh
Q 005232 680 IFKAIFDIRAWDMRTMESLCRACKYAV 706 (707)
Q Consensus 680 ~l~~i~~~~~~~~~v~e~~c~~~~~~~ 706 (707)
++.++++.|..+.++.|.+|++++.++
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999864
No 4
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=1.3e-68 Score=626.78 Aligned_cols=665 Identities=15% Similarity=0.246 Sum_probs=518.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 005232 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (707)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (707)
.+.+++++.++|++ +++.|++|++||++||++|++|..|..||.. +.++++|||||++|+++|+++|+.+|++++..+
T Consensus 27 v~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 27 INLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEF-SQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp HHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH
Confidence 57899999999976 7889999999999999999999999999976 678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhccchhhccc
Q 005232 84 QDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (707)
Q Consensus 84 r~~Ll~~l~~~~~~------~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~~~~~~L~~L~~L~EE~~~ 157 (707)
|+.|++++.+++.+ ++.+++|||.+++.++.+++|+.||+ +++++++.+++++..+.++|.+|+.|+||+.+
T Consensus 105 R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~--fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d 182 (1073)
T 3gjx_A 105 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPT--FISDIVGASRTSESLCQNNMVILKLLSEEVFD 182 (1073)
T ss_dssp HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccH--HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999986433 46788999999999999999999999 99999998876656688999999999999876
Q ss_pred c-cccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhccCCCCCcccccchhHHHH-HhcCCC
Q 005232 158 Y-KIAARPERRRQFEKELTSQMEVALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA-LSSLHS 232 (707)
Q Consensus 158 ~-~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~---~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~-~~~L~~ 232 (707)
. +..++..||.++++.|...++.|++++..+++.+ ++...+++|+.+|+.| ++.+.+.++++++.+ +..|++
T Consensus 183 ~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~~ 259 (1073)
T 3gjx_A 183 FSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLNV 259 (1073)
T ss_dssp SHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSSS
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcCC
Confidence 4 2335678889999999999999999999998653 5667777777777776 555666778999988 799999
Q ss_pred CccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhh-----------hHHHhccC-CCCHHHHHHHHHHHHHHh
Q 005232 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS-----------LKAHLTDS-SKDEEDVKAIARLFADMG 300 (707)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~-----------l~~~l~~~-~~d~~~~~~l~~l~~~l~ 300 (707)
++++++|++||++|+++.. +++.+.+..++..++. +.+.+..+ ++|.++++++|++|+++|
T Consensus 260 ~~~r~aA~dcL~eIv~k~~-------~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~ 332 (1073)
T 3gjx_A 260 PMFRNVSLKCLTEIAGVSV-------SQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFL 332 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCS-------GGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccc-------cchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 9999999999999998632 1233444445544432 22223333 445589999999999999
Q ss_pred hHHHHHHHcCCc---chHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCccc----chHHHHHHHHHhh
Q 005232 301 DSYVELIATGSD---ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA----SAEAERSRRLQVF 373 (707)
Q Consensus 301 e~~~~~i~~~~~---~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~ 373 (707)
++|...+.++++ .....+++++.|+.+++.++.++||+||+.|.+.+++..++.. +..+ +.......+...|
T Consensus 333 e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~-~~~~~~~~~~~~~~~~~~~~y 411 (1073)
T 3gjx_A 333 KEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFST-SASPLLSGSQHFDIPPRRQLY 411 (1073)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCC-CCSSCTTSSCCSCSCHHHHTT
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccc-cccccccccccccchhHHHHH
Confidence 999999987754 2455678899999999999999999999999999986432210 0000 0000011346789
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHH
Q 005232 374 RSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKF 453 (707)
Q Consensus 374 ~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l 453 (707)
+|+|.+|..+++.||.+|+|.-..++|+.|-|+++|++ ..+ .. .+..+.|++.+++ .++++.++..+.+.+
T Consensus 412 ~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d----~~~---~~-ly~~mrd~L~~lt-~l~~~~~~~i~~~~l 482 (1073)
T 3gjx_A 412 LTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKD----TDS---IN-LYKNMRETLVYLT-HLDYVDTEIIMTKKL 482 (1073)
T ss_dssp HHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSS----CHH---HH-HHHHHHHHHHHHH-HHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhh----cch---HH-HHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 99999999999999999986321122333445566665 111 00 0112555665554 344578999888888
Q ss_pred HHHHhhcCCCCCCcchhhHHHHHHHHhhccCCcc-ccccHHHHHhhcCCCCC-------hHHHHHHHHHHHHhhHHHHhh
Q 005232 454 VEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQ-------QPQLLQTVCLTIGAYSKWFDA 525 (707)
Q Consensus 454 ~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~l~~-------~~~l~~t~~~~ig~~~~~l~~ 525 (707)
.+... +. ..+|+.+||++|++++||+.+.++ +++++|++++.|.++|. .+.++.++|+++|+|++|+..
T Consensus 483 ~~~~~--~~-~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~ 559 (1073)
T 3gjx_A 483 QNQVN--GT-EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA 559 (1073)
T ss_dssp HHHHT--SC-CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHhc--CC-CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh
Confidence 77542 22 468999999999999999888764 67899999999887753 246888889999999999999
Q ss_pred CCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHhhccCCCCCChhh
Q 005232 526 ASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAED 596 (707)
Q Consensus 526 ~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~--------~~~~~l~~~~~~~~~~~~~~~l~~~~ 596 (707)
||+ ++++++++++.++++++ +++.+||.||.+||++|++++. ||++++++.+..+.. +++.+.
T Consensus 560 h~~---~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~-----~l~~~~ 631 (1073)
T 3gjx_A 560 HWK---FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIIC-----DLQPQQ 631 (1073)
T ss_dssp CHH---HHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHT-----TCCHHH
T ss_pred CHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH-----hcCHHH
Confidence 996 99999999999997642 4999999999999999999873 689999998888765 488999
Q ss_pred HHHHHHHHHHHHhcCChHH-HHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC-----CcccH
Q 005232 597 SLHLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN-----HPEAV 670 (707)
Q Consensus 597 ~~~l~eai~~vi~~~p~~~-~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-----~~~p~ 670 (707)
...+++|+|.+++++|++. ...++..+++|..+.+++++++...+++ ...+. ..++.++.++|+.. ..+|+
T Consensus 632 ~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~--~~~d~-~~i~~l~~il~~n~~v~~~~g~~f 708 (1073)
T 3gjx_A 632 VHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVD--ILKDP-ETVKQLGSILKTNVRACKAVGHPF 708 (1073)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGG--GGGCH-HHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCch--hccCh-HHHHHHHHHHhhhHHHHhhcchhH
Confidence 9999999999999999986 5789999999999999999975432221 12222 23677777777432 25889
Q ss_pred HHHHHHHhHHHHHHHHhhcCch-------------hHHHHHHHHHhhhh
Q 005232 671 ADAIQRLWPIFKAIFDIRAWDM-------------RTMESLCRACKYAV 706 (707)
Q Consensus 671 ~~~~~~~~p~l~~i~~~~~~~~-------------~v~e~~c~~~~~~~ 706 (707)
.+.+..+||-+-.+.+.+.+.. ....+.||++|+.|
T Consensus 709 ~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~ei 757 (1073)
T 3gjx_A 709 VIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRET 757 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHH
Confidence 9999999997777766543321 14558999999765
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=5.4e-68 Score=637.97 Aligned_cols=647 Identities=21% Similarity=0.378 Sum_probs=520.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHH
Q 005232 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (707)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~l 83 (707)
.+.|+++|+++| ++|++.|++|++||++||++|++|.+|..||.. +.+.++|||||++|+++|+++|+.+|++++..+
T Consensus 6 ~~~l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 6 IARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp -----CTHHHHH-TSTTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence 577999999987 568889999999999999999999999999976 678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-------CCchhHHHHHhccchhhcc
Q 005232 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-------PEFVPGFLELLTVLPEEVF 156 (707)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~-------~~~~~~~L~~L~~L~EE~~ 156 (707)
|+.|++++.+...+++.|++|+|.+++.|+.+++| .||+ +++++++.++++ +.....++.+|+.+|||+.
T Consensus 84 r~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 84 KQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPG--AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccH--HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 99999999997666899999999999999999998 9999 999999888652 2357899999999999987
Q ss_pred cccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh----------HHHHHHHHHHHHHHhccCCCCCcccccchhHHHH
Q 005232 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA 226 (707)
Q Consensus 157 ~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~----------~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~ 226 (707)
+.+ +..+|..+++.+..+++.|++++.++++.. ++...+++|+.+|+.++ .+|.+ ...++++.+
T Consensus 161 ~~~---~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~-~ip~~--~~~~ll~~l 234 (971)
T 2x1g_F 161 VIH---TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI-GYTIE--GCVTITAVL 234 (971)
T ss_dssp HCC---CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS-CCCGG--GHHHHHHHH
T ss_pred ccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC-CcCcc--ccccHHHHH
Confidence 544 356788888999999999999998888642 57889999999999952 25654 457899988
Q ss_pred HhcC------------------CCCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhcc--CCCC-
Q 005232 227 LSSL------------------HSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTD--SSKD- 285 (707)
Q Consensus 227 ~~~L------------------~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~--~~~d- 285 (707)
|. | .+++.+++|++|+.++++.... .++.+.+..+++.++++...+.. .++|
T Consensus 235 ~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 307 (971)
T 2x1g_F 235 LE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC------HNYPKTAFVLIKMFLDSLSEITKTEWKREN 307 (971)
T ss_dssp HH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG------GGCHHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred Hh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc------cccHHHHHHHHHHHHHhHHHHHHHHhcccc
Confidence 87 6 4567899999999999986431 24677888888888776655421 3344
Q ss_pred --HHHHHHHHHHHHHHhhHHHHHHH----c----CCcchHHHHHHHhhhccc----C-chhhhhhhHHHHHHHHHHHhhc
Q 005232 286 --EEDVKAIARLFADMGDSYVELIA----T----GSDESMLIVHALLEVASH----P-EYDIASMTFNFWHSLQVILTKR 350 (707)
Q Consensus 286 --~~~~~~l~~l~~~l~e~~~~~i~----~----~~~~~~~~~~~ll~~~~~----~-~~~v~~~~l~FW~~l~~~l~~~ 350 (707)
++....+|++++.+|+.+...+. + .++.+..+++.|+.++.+ + +++++..+++||+.+.+.....
T Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~ 387 (971)
T 2x1g_F 308 DNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM 387 (971)
T ss_dssp SCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 37888999999999999988776 3 224567889999999877 3 6789999999999998855321
Q ss_pred cCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHHHHhhhcccccCCCchhhhhhhhh
Q 005232 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIA 428 (707)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~ 428 (707)
.. + .........++|+|.++++.++.++.||++ +++|+.+|.++|..||+.
T Consensus 388 ~~------~----~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~----------------- 440 (971)
T 2x1g_F 388 SN------D----EQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQD----------------- 440 (971)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHH-----------------
T ss_pred cc------c----cchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHH-----------------
Confidence 10 0 001134578899999999999999999975 456788888899999998
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCC-C--h
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-Q--Q 505 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~-~--~ 505 (707)
++|++.+++.++| +.+++.+.+.+.+.+......+.+|+.+||++|+++++++++.....+.++.+++.+++++ . |
T Consensus 441 ~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~ 519 (971)
T 2x1g_F 441 ISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLN 519 (971)
T ss_dssp HHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSC
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccC
Confidence 9999999999999 6788888888877653211113789999999999999999999877788999999777666 3 9
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh
Q 005232 506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (707)
Q Consensus 506 ~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~ 585 (707)
|.||.++|+++|+|++|+..+|+ ++++++++++.+++ +. ++.+||.||.+||++|+..|.||+++|++.+..+++
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~~---~l~~vl~~l~~~l~-~~-v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENPA---YIPPAINLLVRGLN-SS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC-------CHHHHHHHHHHHHH-SS-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhC-hH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 99999999999999999999986 99999999999995 76 999999999999999999999999999999999988
Q ss_pred ccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC
Q 005232 586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (707)
Q Consensus 586 ~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 665 (707)
.+ .++.+++..+++++|.+++++|+++..+++..++.|+++.+++++++... +++........++.|+.+++.++
T Consensus 595 ~~---~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~--~~~~~~~~~~~l~~L~~~~~~l~ 669 (971)
T 2x1g_F 595 TG---RMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSK--TPAARIRTIFRLNMISTLFSSLN 669 (971)
T ss_dssp ST---TSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC---CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHHHHHHhhcC
Confidence 64 36789999999999999999997888999999999999999999875421 11123456678899999999876
Q ss_pred C-----------cccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhhhh
Q 005232 666 H-----------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAV 706 (707)
Q Consensus 666 ~-----------~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~~ 706 (707)
. ++|+..+.+.+||++.++++.+..+.+++|++|++++.++
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~ 721 (971)
T 2x1g_F 670 TDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAI 721 (971)
T ss_dssp C-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 3 5789999999999999999999889999999999999864
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1.4e-58 Score=558.41 Aligned_cols=648 Identities=14% Similarity=0.210 Sum_probs=500.3
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHH
Q 005232 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (707)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~ 82 (707)
..++|.++++.+|++ +++.|++|+++|++|+++|++|..|..||.+ +.+.++|||||++||++|+++|..+|++++..
T Consensus 14 ~~~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ 91 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQG-SGVQQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1049)
T ss_dssp CHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSTTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred cHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhCchHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHH
Confidence 357899999999865 5668999999999999999999999999986 66889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhccchhhcc
Q 005232 83 LQDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF 156 (707)
Q Consensus 83 lr~~Ll~~l~~~~~~------~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~~~~~~L~~L~~L~EE~~ 156 (707)
+|+.+++++.+...+ ++.|++|+|.+++.|+.+.+|+.||+ +++++++.+++++......+.+|+.|+||+.
T Consensus 92 ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~--ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~ 169 (1049)
T 3m1i_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE--FIPELIGSSSSSVNVCENNMIVLKLLSEEVF 169 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 999999999986433 37899999999999999999999999 9999999987544456789999999999997
Q ss_pred ccc-ccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHh-cCC
Q 005232 157 NYK-IAARPERRRQFEKELTSQMEVALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALS-SLH 231 (707)
Q Consensus 157 ~~~-~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~---~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~-~L~ 231 (707)
+.+ ...+..||.++++.+..+++.|++++.+++... ++...+++|+.+|+.+ ++.+.+...++++.+++ .+.
T Consensus 170 ~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT 246 (1049)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC
Confidence 642 224567778888889999999999999988653 5889999999999987 45444445778888884 456
Q ss_pred CCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhh------------hHHHhccC-CCCHHHHHHHHHHHHH
Q 005232 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS------------LKAHLTDS-SKDEEDVKAIARLFAD 298 (707)
Q Consensus 232 ~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~------------l~~~l~~~-~~d~~~~~~l~~l~~~ 298 (707)
+++++.+|++||.++++..... ........+..+++.++. +...+..+ ++|++.++++|++|++
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~~---~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIPQ---DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCT---TCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHhCCCCc---chhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHH
Confidence 7889999999999999874311 000012223333444433 22223222 4466778899999999
Q ss_pred HhhHHHHHHHcCC---cchHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHH
Q 005232 299 MGDSYVELIATGS---DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS 375 (707)
Q Consensus 299 l~e~~~~~i~~~~---~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (707)
+++.+...+.+.+ +.+..++++++.++.+++++++..+++||+.+.+.+.+.+ .....++|
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~----------------~~~~~~~~ 387 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEP----------------LKKHIYEE 387 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHST----------------TCGGGGHH
T ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhch----------------hHHHHHHH
Confidence 9999998887632 2355678999999999999999999999999998763211 12457889
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCh-hhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHH
Q 005232 376 AYESLVSLVSFRVQYPQDYQDLSL-EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFV 454 (707)
Q Consensus 376 ~~~~ll~~l~~k~~~p~d~~~~~~-d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~ 454 (707)
++.+++.+++.+|.||+|. .|.+ |+.|.|+++|.+.. .-.+|++++|++.+++.+.| +.+++.+.+.+.
T Consensus 388 ~l~~Lv~~ll~~m~~~ed~-~~~~dd~~e~~r~~~~d~d--------~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~ 457 (1049)
T 3m1i_C 388 ICSQLRLVIIENMVRPEEV-LVVENDEGEIVREFVKESD--------TIQLYKSEREVLVYLTHLNV-IDTEEIMISKLA 457 (1049)
T ss_dssp HHHHHHHHHHHTCCCCTTC-CEEECTTSCEEECSSCCHH--------HHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcce-eeeeCCCCcchHhhhccch--------HHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHH
Confidence 9999999999999999764 3432 33344555554300 00134458999999987776 679999988888
Q ss_pred HHHhhcCCCCCCcchhhHHHHHHHHhhccCCcc-ccccHHHHHhhcCCCC-------ChHHHHHHHHHHHHhhHHHHhhC
Q 005232 455 EGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLP-------QQPQLLQTVCLTIGAYSKWFDAA 526 (707)
Q Consensus 455 ~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~l~-------~~~~l~~t~~~~ig~~~~~l~~~ 526 (707)
+.+.. +..+|+.+||++|+++++++.+... ++.+++++++.+.+++ +||.++.++|+++|+|++|+..|
T Consensus 458 ~~l~~---~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~ 534 (1049)
T 3m1i_C 458 RQIDG---SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1049)
T ss_dssp HHHTS---SSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC
T ss_pred HHhCC---CCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH
Confidence 76531 1478999999999999999988765 3456888888764332 37888889999999999999999
Q ss_pred CCCchhHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHhhccCCCCCChhhH
Q 005232 527 SSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAEDS 597 (707)
Q Consensus 527 p~~~~~l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~c~~~l~--------~~~~~l~~~~~~~~~~~~~~~l~~~~~ 597 (707)
|+ +++++++.++.+++++ ..|+.+||+||.+||++|+.++. ||++.+++.+..++.. ++.++.
T Consensus 535 ~~---~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~-----~~~~~~ 606 (1049)
T 3m1i_C 535 WN---FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-----LQPQQV 606 (1049)
T ss_dssp HH---HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-----SCHHHH
T ss_pred HH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh-----CCHHHH
Confidence 85 9999999999999875 35999999999999999999886 9999999999998763 678889
Q ss_pred HHHHHHHHHHHhcCCh-HHHHHHHHHhhhhhHHHHHHHHhcCCCccccc----CchhhhHHHHHHH--------------
Q 005232 598 LHLVEALSMVITELPQ-VDAKKALEMLCLPVVTPLQEIINQGPEILQKK----HPRDLTVHIDRFA-------------- 658 (707)
Q Consensus 598 ~~l~eai~~vi~~~p~-~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~----~~~~~~~~i~~l~-------------- 658 (707)
..+++|+|.++++.|+ +...+++..++.|+++++++++++...+++.. ..+.+...++.++
T Consensus 607 ~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~ 686 (1049)
T 3m1i_C 607 HTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQL 686 (1049)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999984 56789999999999999999886543221110 0112221122111
Q ss_pred --------HHhhhc-----------C---CcccHHHHHHHHhHHHHHHHHhhcCchhHHHH
Q 005232 659 --------YIFRYV-----------N---HPEAVADAIQRLWPIFKAIFDIRAWDMRTMES 697 (707)
Q Consensus 659 --------~~~~~~-----------~---~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~ 697 (707)
.+++.. + ..+|+...++.+||.+.++++.|..+.+++|.
T Consensus 687 ~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~ 747 (1049)
T 3m1i_C 687 GHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDD 747 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 122220 0 13677788899999999999988765544443
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=1.4e-55 Score=533.85 Aligned_cols=642 Identities=15% Similarity=0.174 Sum_probs=493.5
Q ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHH
Q 005232 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (707)
Q Consensus 4 ~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~ 82 (707)
.++|.++++.+|++ +|++.|++|+++|++|+++|++|..+..+|.+.+.+.++||||+++|+++|+++|..++++++..
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~ 89 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVY 89 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 45688999999986 58889999999999999999999988887764467889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhccchhhcccc
Q 005232 83 LQDSLNTLLKKFHK----GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNY 158 (707)
Q Consensus 83 lr~~Ll~~l~~~~~----~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~~~~~~~L~~L~~L~EE~~~~ 158 (707)
||+.+++++.+... .++.|++|+|.+++.|+.+++|++||+ +++++++.+++++......+.+|..|+||+...
T Consensus 90 Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~--ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~ 167 (1204)
T 3a6p_A 90 LKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPD--MLIELDTLSKQGETQTELVMFILLRLAEDVVTF 167 (1204)
T ss_dssp HHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTT--HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc
Confidence 99999999987532 478999999999999999999999999 999999988765556789999999999998765
Q ss_pred cccCChHHHHHHHHHHHHhhHHHHHHHHHhhhh---------------------hHHHHHHHHHHHHHHhccCCCCCccc
Q 005232 159 KIAARPERRRQFEKELTSQMEVALSTLTACLHI---------------------NELKEQVLEAFASWLRLKHRIPGSVL 217 (707)
Q Consensus 159 ~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~---------------------~~~~~~~l~~l~sWi~~~~~~~~~~~ 217 (707)
+. ....||..+++.+..+++.|++++.+++.. .++...+|+|+.+|+.| ++.+.+
T Consensus 168 ~~-~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W---i~~~~i 243 (1204)
T 3a6p_A 168 QT-LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW---VSMSHI 243 (1204)
T ss_dssp CC-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT---SCHHHH
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc---cCHHHH
Confidence 32 345778888999999999999888877653 13778899999999987 454443
Q ss_pred cc--chhHHHHHhcCCCCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHH----HHhHhhhHHHhcc----CCCCHH
Q 005232 218 AS--HPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVI----VPQIMSLKAHLTD----SSKDEE 287 (707)
Q Consensus 218 ~~--~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l----~~~v~~l~~~l~~----~~~d~~ 287 (707)
.. ..+++.++..+.+++++.+|++||+++++.... ++++.+++..+ +..+++... ... .++|.+
T Consensus 244 ~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~-----~~~~~~li~~l~~~~l~~l~~~~~-~~~~~~~~e~d~e 317 (1204)
T 3a6p_A 244 TAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGK-----LEDRKPLMVLFGDVAMHYILSAAQ-TADGGGLVEKHYV 317 (1204)
T ss_dssp HTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSC-----HHHHGGGGGGGSHHHHHHHHHHHH-TCCCCSCCHHHHH
T ss_pred HhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCC-----hhhHHHHHHHHhhHHHHHHHHHhh-cCCCCCCccHHHH
Confidence 22 359999999999999999999999999986542 11222333221 112222111 011 222457
Q ss_pred HHHHHHHHHHHHhhHHHHHHHc-----CCcchHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccch
Q 005232 288 DVKAIARLFADMGDSYVELIAT-----GSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASA 362 (707)
Q Consensus 288 ~~~~l~~l~~~l~e~~~~~i~~-----~~~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~ 362 (707)
..+.+|++++.+|+.+...+.+ .++.+..++++++.++.||+.+++..+++||+.+.+.... .
T Consensus 318 ~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~-------~----- 385 (1204)
T 3a6p_A 318 FLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEIL-------S----- 385 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTT-------T-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccc-------c-----
Confidence 8899999999999987776653 3456889999999999999999999999999987753210 0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH---HhhccCCCCCCC----CC------h-hhhHHHHHhhhcccccCCCchhhhhhhhh
Q 005232 363 EAERSRRLQVFRSAYESLVSLV---SFRVQYPQDYQD----LS------L-EDLKEFKHTRYDLACCSSSTLTESVMLIA 428 (707)
Q Consensus 363 ~~~~~~~~~~~~~~~~~ll~~l---~~k~~~p~d~~~----~~------~-d~~~~f~~~R~~~~~~~~~~~~~~~~~~~ 428 (707)
..+.+++++.+|++++ +.|++||++.+. |. + |+.+.|..||++
T Consensus 386 ------~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~----------------- 442 (1204)
T 3a6p_A 386 ------RDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQ----------------- 442 (1204)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHH-----------------
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHH-----------------
Confidence 1235889999999999 899999985432 22 1 223568999999
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhc--------------------CCCCCCcchhhHHHHHHHHhhccCCc-c
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACC--------------------GNKHNEWRPAEAALFCIRAISTYVSV-V 487 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~--------------------~~~~~~w~~~Ea~l~~l~~ia~~~~~-~ 487 (707)
++|++++++.+.+ +..+.++.+.+.+.+.+. ...+..|...||..+++.++++++.. .
T Consensus 443 ~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~ 521 (1204)
T 3a6p_A 443 QGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTL 521 (1204)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999887 556766666665443221 00124688999999999999888722 1
Q ss_pred c-----cccHHHHHhhcCCC-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-------------h
Q 005232 488 E-----AEVMPQVMALLPKL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-------------E 548 (707)
Q Consensus 488 ~-----~~~l~~l~~~l~~l-~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~-------------~ 548 (707)
+ +..++.+++.+.++ +.||.++.+.+.++|+|++|+..||+ +++++|++++.++.++ +
T Consensus 522 e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~---~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k 598 (1204)
T 3a6p_A 522 NREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPE---FLPQVFSKLFSSVTFETVEESKAPRTRAVR 598 (1204)
T ss_dssp CTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGG---GHHHHHHHHHHHHHCCTTCSTTSCCCHHHH
T ss_pred ccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCch---HHHHHHHHHHHhhccCCcccccccccHHHH
Confidence 1 13468888887765 46999999999999999999999997 9999999999887541 1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCC-CChhhHHHHHHHHHHHHhcCChH-HHHHHHHHhhhh
Q 005232 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLK-VSAEDSLHLVEALSMVITELPQV-DAKKALEMLCLP 626 (707)
Q Consensus 549 ~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~~l~eai~~vi~~~p~~-~~~~~l~~l~~p 626 (707)
.++.+|+.+|.+||++|+..|.||+++|.+.+..++..+ . ++..++..+++|++.+...+|++ +...++..++.|
T Consensus 599 ~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~---~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P 675 (1204)
T 3a6p_A 599 NVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNE---LLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAP 675 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHST---TTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc---ccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999988753 4 78999999999999996665555 555779999999
Q ss_pred hHHHHHH-----HHhcCC---------Ccc------cccC--chhhhHHHHHHHHHhhhc------------------C-
Q 005232 627 VVTPLQE-----IINQGP---------EIL------QKKH--PRDLTVHIDRFAYIFRYV------------------N- 665 (707)
Q Consensus 627 ~~~~L~~-----~~~~~~---------~~~------~~~~--~~~~~~~i~~l~~~~~~~------------------~- 665 (707)
+++.+.+ .++.+. +.. +..+ ...+...+..+...++-+ .
T Consensus 676 ~~~~w~~~~~~~~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~ 755 (1204)
T 3a6p_A 676 VASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTS 755 (1204)
T ss_dssp HHHHHSCHHHHHHHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECS
T ss_pred HHHHHccHHHHHhhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceeccCC
Confidence 9999884 332211 000 0000 121222222333222221 0
Q ss_pred -----CcccHHHHHHHHhHHHHHHHHhhc--CchhHHHHHH
Q 005232 666 -----HPEAVADAIQRLWPIFKAIFDIRA--WDMRTMESLC 699 (707)
Q Consensus 666 -----~~~p~~~~~~~~~p~l~~i~~~~~--~~~~v~e~~c 699 (707)
..||+.+.++.+||.+-+++..+. +++++.+++|
T Consensus 756 ~~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~p~~~~~l~ 796 (1204)
T 3a6p_A 756 SGNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMA 796 (1204)
T ss_dssp SCCEEECCTTHHHHHHHHHHHHHHHHHHHHTTSHHHHTTSC
T ss_pred CCCccccCchHHHHHHHhHHHHHHHHHHHHhcCcHhhhhcC
Confidence 037999999999999999999887 7899999999
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=3.9e-40 Score=394.32 Aligned_cols=604 Identities=14% Similarity=0.156 Sum_probs=412.9
Q ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCC------C
Q 005232 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE------E 74 (707)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~------~ 74 (707)
|+.+++|.++++..+ +||++.| |+++|++++++|++|..+.+++.+++.+.++|++||++||++|+++|. .
T Consensus 1 M~d~~~l~~~L~~~~-spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~ 77 (960)
T 1wa5_C 1 MSDLETVAKFLAESV-IASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (960)
T ss_dssp CCHHHHHHHHHHHTT-SGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred CCcHHHHHHHHHHhc-CCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence 888999999999964 6688777 999999999999999999999987567789999999999999999997 7
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhccchh
Q 005232 75 LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPE 153 (707)
Q Consensus 75 l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~E 153 (707)
++++++..+|+.+++.+.. .++.||+|+|.+++.|+.+++|++||+ +++++++.++++. ......|.+|..+++
T Consensus 78 l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~Wp~--ll~~L~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 78 LPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPT--LLSDLASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTT--HHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCccchhH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 568999999999999999999999999 9999999987643 456788888888887
Q ss_pred hcccccccCChHHHHHHHHHHHHhhHHHHHHHHHh---hhhh-----------HHHHHHHHHHHHHHhccCCCCCccccc
Q 005232 154 EVFNYKIAARPERRRQFEKELTSQMEVALSTLTAC---LHIN-----------ELKEQVLEAFASWLRLKHRIPGSVLAS 219 (707)
Q Consensus 154 E~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~---l~~~-----------~~~~~~l~~l~sWi~~~~~~~~~~~~~ 219 (707)
+.... . .+++.|.+++..+...++.+++++... ++.+ ++...+++++.+-+.. .+|..
T Consensus 153 ~~~~~-~-~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~--~~~~~---- 224 (960)
T 1wa5_C 153 RWRPL-F-RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ--DIPEF---- 224 (960)
T ss_dssp GGTTS-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS--CCCHH----
T ss_pred HHHHh-h-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc--cchHH----
Confidence 65321 1 123445555556667777777766544 3221 1122234444321111 11100
Q ss_pred chhHHHHHhcCCCCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCC--CC-----HHHHHHH
Q 005232 220 HPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSS--KD-----EEDVKAI 292 (707)
Q Consensus 220 ~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~--~d-----~~~~~~l 292 (707)
+ .+.+..++..+..++... ......+ ++ +...+.+
T Consensus 225 ---~---------~~~~~~~~~~~~~~l~~~--------------------------~p~~~~d~d~~~~~~~~~vk~~~ 266 (960)
T 1wa5_C 225 ---F---------EDNIQVGMGIFHKYLSYS--------------------------NPLLEDPDETEHASVLIKVKSSI 266 (960)
T ss_dssp ---H---------HHTHHHHHHHHHHHHSCC--------------------------SCCCC------CCCHHHHHHHHH
T ss_pred ---H---------HHHHHHHHHHHHHHHcCC--------------------------CCcccCCcccccccHHHHHHHHH
Confidence 0 000111122222222110 0000011 00 1123467
Q ss_pred HHHHHHHhhHHHHHHHcCCcchHHHHHHHhhhcc-----cCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHH
Q 005232 293 ARLFADMGDSYVELIATGSDESMLIVHALLEVAS-----HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERS 367 (707)
Q Consensus 293 ~~l~~~l~e~~~~~i~~~~~~~~~~~~~ll~~~~-----~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~ 367 (707)
+++++.+.+.+...+.. ....+++.++.... ..+++++..+++||..+.+. .
T Consensus 267 ~~~l~~l~~~~~~~f~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~--------------------~ 323 (960)
T 1wa5_C 267 QELVQLYTTRYEDVFGP---MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI--------------------P 323 (960)
T ss_dssp HHHHHHHHHHCHHHHHH---HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS--------------------H
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc--------------------H
Confidence 78888888777766642 34455666665443 23568999999999887541 1
Q ss_pred HHHHhhH--HHHHHHH-HHHHhhccCCC-CCCCCChhhhHHHHHhhhcccc-cCCCchhhhhhhhhhhhHHHHHHhhcCh
Q 005232 368 RRLQVFR--SAYESLV-SLVSFRVQYPQ-DYQDLSLEDLKEFKHTRYDLAC-CSSSTLTESVMLIAVADVLIDAASVLGG 442 (707)
Q Consensus 368 ~~~~~~~--~~~~~ll-~~l~~k~~~p~-d~~~~~~d~~~~f~~~R~~~~~-~~~~~~~~~~~~~~~~d~l~~~~~~l~~ 442 (707)
.....++ |++.+++ .+++..+.|++ |.+.|++|. ++| .|++..+ |.. .+|.++++++..++..+|
T Consensus 324 ~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp-~e~--i~~d~e~~d~~------s~R~aa~~~L~~l~~~~~- 393 (960)
T 1wa5_C 324 KYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP-IEY--IRRDLEGSDTD------TRRRACTDFLKELKEKNE- 393 (960)
T ss_dssp HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH-HHH--HHHHHHC----------CHHHHHHHHHHHHHHHCH-
T ss_pred hHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH-HHH--HHhccCccccc------CcHHHHHHHHHHHHHHcc-
Confidence 1234555 8899999 68889999975 455676443 444 3443322 222 267779999999999998
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCCCCcchhhHHHHHHHHhhccCCcc---cc------ccHHHHHhh-cCCC----CChHH
Q 005232 443 DATLKILYIKFVEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSVV---EA------EVMPQVMAL-LPKL----PQQPQ 507 (707)
Q Consensus 443 ~~~l~~l~~~l~~~~~~-~~~~~~~w~~~Ea~l~~l~~ia~~~~~~---~~------~~l~~l~~~-l~~l----~~~~~ 507 (707)
+.+++.+.+.+.+.+.+ ..++..+|+.+||+++++++++++.... .. .+.+-+.+. ++.+ |.||.
T Consensus 394 ~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~ 473 (960)
T 1wa5_C 394 VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHII 473 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHH
T ss_pred hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCce
Confidence 66777676666555432 1112467999999999999998764211 11 222222222 2222 24999
Q ss_pred HHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHH-----------hhhhhcCCHHH
Q 005232 508 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD-----------CRKKLCGYLDG 575 (707)
Q Consensus 508 l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~-----------c~~~l~~~~~~ 575 (707)
||.++|+++|+|++|+ +|+ +++.+++.+++++.++. .|+.+||.||.+||+. ++..+.||+++
T Consensus 474 vr~~a~~~lg~~~~~~--~~~---~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 548 (960)
T 1wa5_C 474 LRVDAIKYIYTFRNQL--TKA---QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEI 548 (960)
T ss_dssp HHHHHHHHHHHTGGGS--CHH---HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHH
T ss_pred ehHHHHHHHHHHHhhC--CHH---HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHH
Confidence 9999999999999998 343 89999999999998763 5899999999999984 35679999999
Q ss_pred HHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHH
Q 005232 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID 655 (707)
Q Consensus 576 l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~ 655 (707)
+++.+..+++..++......+...++++++.++...+ ++..+++..++.+++..++...+++ + ........++
T Consensus 549 ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~-~~~~p~~~~l~~~L~~~l~~~~~~~----~--~~~~~~~~~e 621 (960)
T 1wa5_C 549 LLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE-DSIQPLFPQLLAQFIEIVTIMAKNP----S--NPRFTHYTFE 621 (960)
T ss_dssp HHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT-TTTGGGHHHHHHHHHHHHHHHTTSC----C--CHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhCC----C--CcHHHHHHHH
Confidence 9999999887521000112256799999999999876 4455677777777777777664432 1 1222346789
Q ss_pred HHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCch--hHHHHHHHHHhh
Q 005232 656 RFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM--RTMESLCRACKY 704 (707)
Q Consensus 656 ~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~--~v~e~~c~~~~~ 704 (707)
.++.+++. ..|+++..+.+.+||++..++++...+. .+.+.++.+++.
T Consensus 622 ~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 622 SIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 99999997 3467889999999999999999876542 355655555543
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3.4e-33 Score=330.93 Aligned_cols=554 Identities=14% Similarity=0.199 Sum_probs=389.1
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHH
Q 005232 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (707)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~-~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~ 81 (707)
..+++.++++..+ ++|++.|++|+++|++++++|++|..+..|+.+ .+.+.++|++|++.||+.|+++|..++++++.
T Consensus 11 ~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~ 89 (852)
T 4fdd_A 11 GLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTD 89 (852)
T ss_dssp HHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHH
T ss_pred hHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 3567788888876 669999999999999999999999999999984 46778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhccchhhcccccc
Q 005232 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKI 160 (707)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE~~~~~~ 160 (707)
.+|+.+++.+.. .++.||++++.+++.++.+.+++.||+ +++.+.+.+++.. ......+..|..+.++.....
T Consensus 90 ~ik~~ll~~l~~---~~~~vr~~~a~~i~~ia~~~~~~~wp~--ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~- 163 (852)
T 4fdd_A 90 FIKSECLNNIGD---SSPLIRATVGILITTIASKGELQNWPD--LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL- 163 (852)
T ss_dssp HHHHHHHTTTTC---SSHHHHHHHHHHHHHHHHHTTTTTCTT--HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH-
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHhcCccccHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh-
Confidence 999999998753 678999999999999999988889999 9999999887643 345667777777766543210
Q ss_pred cCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh--HHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCccHHH
Q 005232 161 AARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238 (707)
Q Consensus 161 ~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~--~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~ 238 (707)
.+ +.+....+.++..+.+.+..+ +++..+++|+..++..
T Consensus 164 -----~~----~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~------------------------------ 204 (852)
T 4fdd_A 164 -----DS----DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS------------------------------ 204 (852)
T ss_dssp -----HH----CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT------------------------------
T ss_pred -----ch----hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc------------------------------
Confidence 00 001111233444444444332 3555555555433321
Q ss_pred HHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCcchHHHH
Q 005232 239 SVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIV 318 (707)
Q Consensus 239 a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~~~~~~~ 318 (707)
... .....+..+++.+.. . ..++|++..+..++.+..+++.+...+.. +...++
T Consensus 205 -----------~~~-------~~~~~~~~~l~~l~~---~--~~d~~~~vr~~a~~~L~~l~~~~~~~~~~---~l~~l~ 258 (852)
T 4fdd_A 205 -----------RTQ-------ALMLHIDSFIENLFA---L--AGDEEPEVRKNVCRALVMLLEVRMDRLLP---HMHNIV 258 (852)
T ss_dssp -----------TCH-------HHHTSHHHHHHHHHH---H--HTCCCHHHHHHHHHHHHHHHHHCHHHHGG---GHHHHH
T ss_pred -----------ccH-------HHHHHHHHHHHHHHH---H--cCCCCHHHHHHHHHHHHHHHHhCHHHHHH---HHHHHH
Confidence 000 001111122222221 1 12456666778888999998888776654 456788
Q ss_pred HHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCC
Q 005232 319 HALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLS 398 (707)
Q Consensus 319 ~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~ 398 (707)
+.++.+..+++++++..+++||..+.+.. .....++|++.+++..++.++.|+++...|-
T Consensus 259 ~~l~~~~~~~~~~vr~~a~e~l~~l~~~~--------------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 259 EYMLQRTQDQDENVALEACEFWLTLAEQP--------------------ICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTST--------------------THHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcch--------------------hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 99999988899999999999998876521 0123567788899999999998875322221
Q ss_pred -----hhhhH--HHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhh
Q 005232 399 -----LEDLK--EFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAE 471 (707)
Q Consensus 399 -----~d~~~--~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~E 471 (707)
+|+.+ .+..++ .|.++++++..++..+| +.+++.+.+.+.+.+. ..+|+.++
T Consensus 319 ~~d~~ed~~~dd~~~~~~---------------vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~-----~~~~~~R~ 377 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISDWN---------------LRKCSAAALDVLANVYR-DELLPHILPLLKELLF-----HHEWVVKE 377 (852)
T ss_dssp HC------------CCCC---------------HHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHT-----CSSHHHHH
T ss_pred cCCcccccccccccccch---------------HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhc-----CCCHHHHH
Confidence 11111 111110 12337888888888888 5677777787776652 35799999
Q ss_pred HHHHHHHHhhccCCccccccHHHHHhhcCC-C-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-
Q 005232 472 AALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE- 548 (707)
Q Consensus 472 a~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l-~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~- 548 (707)
++++++++++++....-.++++.+++.+.. + .+++.||.++++++|+|++|+...+. ..++..+++.++.++.++.
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~L~~~L~d~~~ 456 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-DTYLKPLMTELLKRILDSNK 456 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-TTTHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHhCCCH
Confidence 999999999998875444566777766543 3 25899999999999999999976431 1389999999999886543
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHH-HHHHHHHhhhhh
Q 005232 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEMLCLPV 627 (707)
Q Consensus 549 ~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~-~~~~l~~l~~p~ 627 (707)
.++..|+.||..+|+.|...+.||++.++..+...++. ...+....++++++.++..+++.- ..+++..++.++
T Consensus 457 ~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~-----~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l 531 (852)
T 4fdd_A 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK-----YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 531 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 59999999999999999999999999999999988864 345666778999999988765432 245788888777
Q ss_pred HHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHH
Q 005232 628 VTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFD 686 (707)
Q Consensus 628 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~ 686 (707)
++.+..+.. .. ......++.++.+.+.++. .+.+++..++|.+-.+++
T Consensus 532 ~~~~~~l~d-~~--------~~~~~~~~~l~~i~~~~g~--~~~~~~~~i~~~~~~~l~ 579 (852)
T 4fdd_A 532 IQKWNMLKD-ED--------KDLFPLLECLSSVATALQS--GFLPYCEPVYQRCVNLVQ 579 (852)
T ss_dssp HHHHHHSCT-TC--------TTHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccc-cc--------HHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHH
Confidence 776544322 11 1122456777777776642 345555556664444443
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.4e-30 Score=309.25 Aligned_cols=589 Identities=14% Similarity=0.166 Sum_probs=405.2
Q ss_pred CchHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCC-----
Q 005232 1 MELQNTVKEALNAL-YHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDV----- 72 (707)
Q Consensus 1 ~~~~~~v~~al~~l-y~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w----- 72 (707)
|.. +++.++|..+ + ++|++.|++|+++|++++++ |++|..+.+++.+.+.+.++|++|+++||++|+++|
T Consensus 1 Md~-~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~ 78 (861)
T 2bpt_A 1 MST-AEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQ 78 (861)
T ss_dssp CCH-HHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred CCH-HHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHH
Confidence 554 4788999997 6 67999999999999999986 999999999998644678999999999999998775
Q ss_pred ------CC-CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC-C-Cchh
Q 005232 73 ------EE-LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH-P-EFVP 142 (707)
Q Consensus 73 ------~~-l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~-~~W~~~~~i~~l~~~~~~~-~-~~~~ 142 (707)
.. ++++++..+|+.+++.+.. .++.+|++++.+++.++.+.+| +.||+ +++.+++.+++. . ....
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~~w~~--ll~~L~~~l~~~~~~~~r~ 153 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALVS---IEPRIANAAAQLIAAIADIELPHGAWPE--LMKIMVDNTGAEQPENVKR 153 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHGGGTCCHH--HHHHHHHHTSTTSCHHHHH
T ss_pred HHHHhHhhhCCHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHHHHhhCcccccHH--HHHHHHHHHhcCCCHHHHH
Confidence 54 9999999999999998765 5678999999999999999877 48998 999999998764 2 3467
Q ss_pred HHHHHhccchhhcccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhh----hHHHHHHHHHHHHHHhccCCCCCcccc
Q 005232 143 GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI----NELKEQVLEAFASWLRLKHRIPGSVLA 218 (707)
Q Consensus 143 ~~L~~L~~L~EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~----~~~~~~~l~~l~sWi~~~~~~~~~~~~ 218 (707)
..+.+|..+++++... . | .+..+.+.++..+...+.. ++++..+++|+.+|+.+.. .. +.
T Consensus 154 ~al~~l~~l~~~~~~~-~------~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~---~~-~~ 217 (861)
T 2bpt_A 154 ASLLALGYMCESADPQ-S------Q-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK---NN-ME 217 (861)
T ss_dssp HHHHHHHHHHHTSSTT-S------S-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH---HH-HT
T ss_pred HHHHHHHHHHHcCChh-h------h-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HH-cc
Confidence 7889999998876421 0 0 1233455667766666654 3588889999988876521 00 00
Q ss_pred cchhHHHHHhcCCCCccHHHHHHHHHHHHhhhccCCCCCCCCcHh-HHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHH
Q 005232 219 SHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMP-LIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFA 297 (707)
Q Consensus 219 ~~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~-~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~ 297 (707)
. . ...+ ++..+. ..+ .+.+.+..+..++++.
T Consensus 218 ~------------------------------~---------~~~~~ll~~l~-------~~~--~~~~~~~r~~a~~~l~ 249 (861)
T 2bpt_A 218 R------------------------------E---------GERNYLMQVVC-------EAT--QAEDIEVQAAAFGCLC 249 (861)
T ss_dssp S------------------------------H---------HHHHHHHHHHH-------HHH--TCSCHHHHHHHHHHHH
T ss_pred C------------------------------h---------hHHHHHHHHHH-------HHh--cCCCHHHHHHHHHHHH
Confidence 0 0 0000 111111 011 1234444555667777
Q ss_pred HHhhHHHHHHHcCCcchH-HHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHH
Q 005232 298 DMGDSYVELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 376 (707)
Q Consensus 298 ~l~e~~~~~i~~~~~~~~-~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (707)
.+++.+...+.. .+. .++++++.....+++++...+++||..+.+.......+. .+.+.++ .......+++
T Consensus 250 ~l~~~~~~~~~~---~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~ 321 (861)
T 2bpt_A 250 KIMSKYYTFMKP---YMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYEL---AQFPQSP--LQSYNFALSS 321 (861)
T ss_dssp HHHHHHGGGCHH---HHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH---HHCTTCS--CCCCCHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhh---hhccCCc--hhhHHHHHHH
Confidence 776665443321 233 567777777778889999999999999887542100000 0000000 0001134567
Q ss_pred HHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHH
Q 005232 377 YESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEG 456 (707)
Q Consensus 377 ~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~ 456 (707)
+..++..++..+..+++.+ + | +++ ..|.. +.+++..++..+| +.+++.+.+.+.+.
T Consensus 322 ~~~il~~ll~~l~~~~~d~-~--d--~~~-~~r~~-----------------a~~~L~~l~~~~~-~~~~~~l~~~l~~~ 377 (861)
T 2bpt_A 322 IKDVVPNLLNLLTRQNEDP-E--D--DDW-NVSMS-----------------AGACLQLFAQNCG-NHILEPVLEFVEQN 377 (861)
T ss_dssp HHHHHHHHHHHTTCCCCC--C--C--CCC-HHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccc-c--c--ccC-cHHHH-----------------HHHHHHHHHHHcc-HhHHHHHHHHHHHH
Confidence 7888888888887764321 1 1 111 34444 8889988888888 55777777777665
Q ss_pred HhhcCCCCCCcchhhHHHHHHHHhhccCC-ccccccHHHHHhhcCC-C-CChHHHHHHHHHHHHhhHHHHhhCCCCchhH
Q 005232 457 VACCGNKHNEWRPAEAALFCIRAISTYVS-VVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSIL 533 (707)
Q Consensus 457 ~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~-~~~~~~l~~l~~~l~~-l-~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l 533 (707)
+. ..+|+.++++++++++++++.. ..-.++++.+++.+.. + .+++.||.++++++|+|+.++..+-....++
T Consensus 378 l~-----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 452 (861)
T 2bpt_A 378 IT-----ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL 452 (861)
T ss_dssp TT-----CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH
T ss_pred cC-----CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence 42 4679999999999999998876 2233455666655432 2 2489999999999999999997631001389
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHHHHhh----hhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHh
Q 005232 534 ASVLSILTSGMSTSEDTAAAAALAFRHICDDCR----KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (707)
Q Consensus 534 ~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~----~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (707)
+.+++.++.+++++..++..|+.++..+|+.|. ..+.||++.++..+...+...+ .+...+..++++++.++.
T Consensus 453 ~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d---~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 453 PGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID---NEFNARASAFSALTTMVE 529 (861)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC---CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcC---cchHHHHHHHHHHHHHHH
Confidence 999999999887765599999999999999986 6788999999999988876421 224568889999999999
Q ss_pred cCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcc---c-ccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHH
Q 005232 610 ELPQVDAKKALEMLCLPVVTPLQEIINQGPEIL---Q-KKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIF 685 (707)
Q Consensus 610 ~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~---~-~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~ 685 (707)
..+. +..+++..++.++++.|.+.+....... + ..........++.++.+++.++. .+.++...++|.+..++
T Consensus 530 ~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l 606 (861)
T 2bpt_A 530 YATD-TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLFFRLL 606 (861)
T ss_dssp HCCG-GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHHHH
T ss_pred Hcch-hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHH
Confidence 9885 4568888999999999887743211000 0 00111123466788888887642 34455667888877777
Q ss_pred HhhcCchhHHHHHHHHHhh
Q 005232 686 DIRAWDMRTMESLCRACKY 704 (707)
Q Consensus 686 ~~~~~~~~v~e~~c~~~~~ 704 (707)
+....+ .+-+.++.++..
T Consensus 607 ~~~~~~-~v~~~~~~~l~~ 624 (861)
T 2bpt_A 607 EKKDSA-FIEDDVFYAISA 624 (861)
T ss_dssp HSTTGG-GTHHHHHHHHHH
T ss_pred ccCCCC-cHHHHHHHHHHH
Confidence 664332 555666655543
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.97 E-value=1.1e-27 Score=285.05 Aligned_cols=586 Identities=14% Similarity=0.156 Sum_probs=387.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhh-----------cCC
Q 005232 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDV 72 (707)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~-----------~~w 72 (707)
++.+++..++ ++|++.|++|+++|++++++ ++.|..+..++.+++.+..+|++|+++||+++. +.|
T Consensus 2 ~l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 2 ELITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 3667777775 67999999999999999988 999999999998644678899999999999985 458
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC--C-CchhHHHHHh
Q 005232 73 EELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH--P-EFVPGFLELL 148 (707)
Q Consensus 73 ~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~-~~W~~~~~i~~l~~~~~~~--~-~~~~~~L~~L 148 (707)
..++++.+..+|+.+++.+.. .++.+ ++++.+++.++.+.++ +.||+ +++.+.+.+++. . ......+.+|
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~---~~~~~-~~~~~~l~~i~~~~~~~~~w~~--ll~~l~~~l~~~~~~~~~r~~al~~l 154 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAI 154 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTT---CCSSS-CHHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCC---CcHHH-HHHHHHHHHHHHhhCcccccHH--HHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 899999999999999998865 34456 9999999999988765 78999 999999988654 2 3456788888
Q ss_pred ccchhhcccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh----HHHHHHHHHHHHHHhccCCCCCcccccchhHH
Q 005232 149 TVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (707)
Q Consensus 149 ~~L~EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~----~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~ 224 (707)
..+++++.. +.+....+.++..+.+.+..+ +++..+++|+..|+.+. +.. +.
T Consensus 155 ~~l~~~~~~--------------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~~-~~------ 210 (876)
T 1qgr_A 155 GYICQDIDP--------------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---KAN-FD------ 210 (876)
T ss_dssp HHHHHHSCH--------------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC---HHH-HT------
T ss_pred HHHHHhcCH--------------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---HHH-HH------
Confidence 888877421 124456677777777776543 57788888888887641 100 00
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHH
Q 005232 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYV 304 (707)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~ 304 (707)
. ..+...+++.+. ... .+.|++.....++++..+++.+.
T Consensus 211 -----------------------------------~-~~~~~~il~~l~----~~~-~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 211 -----------------------------------K-ESERHFIMQVVC----EAT-QCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp -----------------------------------S-HHHHHHHHHHHH----HHT-TCSSHHHHHHHHHHHHHHHHHSG
T ss_pred -----------------------------------h-HHHHHHHHHHHH----HHc-CCCCHHHHHHHHHHHHHHHHHhH
Confidence 0 000000111111 011 12334444456666666666554
Q ss_pred HHHHcCCcchH-HHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHH----HHHHHhhHHHHHH
Q 005232 305 ELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAER----SRRLQVFRSAYES 379 (707)
Q Consensus 305 ~~i~~~~~~~~-~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 379 (707)
..+.. .+. .+++.++.+...+++++...+++||..+.+...... .+++.... .+ .......++.+.+
T Consensus 250 ~~~~~---~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 321 (876)
T 1qgr_A 250 QYMET---YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA----IEASEAAE-QGRPPEHTSKFYAKGALQY 321 (876)
T ss_dssp GGCHH---HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HSSCCSSCCCCHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHh----hhhccccc-cCCCccchhHHHHHHHHHH
Confidence 33221 223 567777777778888999999999999987532100 00000000 00 0011233455677
Q ss_pred HHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhh
Q 005232 380 LVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVAC 459 (707)
Q Consensus 380 ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~ 459 (707)
++..++..+...++.+ |+ +++ ..|+. +.+++..++..+| +.+++.+.+.+.+.+.
T Consensus 322 ll~~ll~~l~~~~~d~----~~-~~~-~~r~~-----------------a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~- 376 (876)
T 1qgr_A 322 LVPILTQTLTKQDEND----DD-DDW-NPCKA-----------------AGVCLMLLATCCE-DDIVPHVLPFIKEHIK- 376 (876)
T ss_dssp HHHHHHHHTTCCCSSC----CT-TCC-CHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHHTT-
T ss_pred HhHHHHHHhhcccccc----cc-ccc-HHHHH-----------------HHHHHHHHHHHCc-HhhHHHHHHHHHHHcc-
Confidence 7777777765432211 11 111 33444 8888888888888 5567767776665542
Q ss_pred cCCCCCCcchhhHHHHHHHHhhccCCcc-ccccHHHHHhhcCC-C-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH
Q 005232 460 CGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASV 536 (707)
Q Consensus 460 ~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~-l-~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~ 536 (707)
..+|+.+++++++++.+++.+.++ -.++++.+++.+.. + .+++.||.++++++|+|++++........+++.+
T Consensus 377 ----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~ 452 (876)
T 1qgr_A 377 ----NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452 (876)
T ss_dssp ----CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHH
T ss_pred ----CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHH
Confidence 467999999999999999987733 23455555554432 2 2489999999999999999987521011389999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHHhh--------------hhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHH
Q 005232 537 LSILTSGMSTSEDTAAAAALAFRHICDDCR--------------KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVE 602 (707)
Q Consensus 537 l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~--------------~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~e 602 (707)
++.++.++.++..++..|+.++..+++.+. ..+.||++.++..+...+...+. -+...+..+++
T Consensus 453 l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~--~~~~~r~~~~~ 530 (876)
T 1qgr_A 453 LQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQNNLRSSAYE 530 (876)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--CSTTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc--chhhHHHHHHH
Confidence 999999998765589999999999999887 34889999999999988764311 01345778999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCc---hh-hhHHHHHHHHHhhhcCCcccHHHHHHHHh
Q 005232 603 ALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHP---RD-LTVHIDRFAYIFRYVNHPEAVADAIQRLW 678 (707)
Q Consensus 603 ai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~---~~-~~~~i~~l~~~~~~~~~~~p~~~~~~~~~ 678 (707)
+++.++...+. +..+++..++.++++.+...+.......+.... .. ....+..++.+.+.++. ..+.+++..++
T Consensus 531 ~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~l~ 608 (876)
T 1qgr_A 531 SLMEIVKNSAK-DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDALQISDVVM 608 (876)
T ss_dssp HHHHHHHTCCS-TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHHTTHHHHH
T ss_pred HHHHHHHHCch-hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhhHHHHHHH
Confidence 99999999986 466789999999999988875422110000000 11 12345666676665531 33445566677
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHhh
Q 005232 679 PIFKAIFDIRAWDMRTMESLCRACKY 704 (707)
Q Consensus 679 p~l~~i~~~~~~~~~v~e~~c~~~~~ 704 (707)
|.+..+++...+...+-+.+++++..
T Consensus 609 ~~l~~~l~~~~~~~~v~~~a~~~l~~ 634 (876)
T 1qgr_A 609 ASLLRMFQSTAGSGGVQEDALMAVST 634 (876)
T ss_dssp HHHHHHC-----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCccHHHHHHHHH
Confidence 77777666542223456666666544
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=2.6e-25 Score=244.21 Aligned_cols=432 Identities=13% Similarity=0.139 Sum_probs=294.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhc--ChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcC-----------C
Q 005232 6 TVKEALNALYHHPDDAVRMQADRWLQDFQH--TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRD-----------V 72 (707)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~--s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~-----------w 72 (707)
++.+++..++ ++|++.|++|+++|+++++ .|+.|..+..++.+.+.+.++|++|+++||++++++ |
T Consensus 2 ~l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 2 ELITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 3667777775 6799999999999999998 599999999999874457899999999999999887 5
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC--C-CchhHHHHHh
Q 005232 73 EELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH--P-EFVPGFLELL 148 (707)
Q Consensus 73 ~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~-~~W~~~~~i~~l~~~~~~~--~-~~~~~~L~~L 148 (707)
..++++++..+|+.|++.+.. .++.+ ++++.+++.++.+.+| +.||+ +++.+++.+++. . ......+.+|
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~---~~~~v-~~~~~~i~~ia~~~~~~~~w~~--ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTC---CCSSS-CSHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCC---CCchh-hHHHHHHHHHHHHhccccccHH--HHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 789999999999999998765 44557 9999999999998876 48998 999999988764 2 3467889999
Q ss_pred ccchhhcccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh----HHHHHHHHHHHHHHhccCCCCCcccccchhHH
Q 005232 149 TVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (707)
Q Consensus 149 ~~L~EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~----~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~ 224 (707)
..++++..... +..+.+.++..+...+..+ .++..+++|+.+|+.+. .. ...
T Consensus 155 ~~l~~~~~~~~--------------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~-~~~------ 210 (462)
T 1ibr_B 155 GYICQDIDPEQ--------------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---KA-NFD------ 210 (462)
T ss_dssp HHHHHHSCGGG--------------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT---HH-HHT------
T ss_pred HHHHHhCCchh--------------hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---HH-hhh------
Confidence 99988763210 2234455666666666543 47888888888887541 00 000
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHH
Q 005232 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYV 304 (707)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~ 304 (707)
+ . ...++ +++.+. .. ..+.|++.....++++..+++.+.
T Consensus 211 --------~----------------~---------~~~~~---l~~~l~----~~-~~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 211 --------K----------------E---------SERHF---IMQVVC----EA-TQCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp --------S----------------H---------HHHHH---HHHHHH----HH-TTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred --------h----------------h---------HHHHH---HHHHHH----Hh-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00011 111111 11 123455666678888888888775
Q ss_pred HHHHcCCcchH-HHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccc---cCcccchHHHHHHHHHhhHHHHHHH
Q 005232 305 ELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYIS---FGNEASAEAERSRRLQVFRSAYESL 380 (707)
Q Consensus 305 ~~i~~~~~~~~-~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 380 (707)
..+.. .+. .+++.++.+....++++...+++||..+.+.......+.. -+..+.. ......+++++..+
T Consensus 250 ~~~~~---~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l 322 (462)
T 1ibr_B 250 QYMET---YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE----HTSKFYAKGALQYL 322 (462)
T ss_dssp GGCTT---TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSS----CCCCCHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcc----chhHHHHHHHhhhc
Confidence 54432 233 5677777777778889999999999999875421100000 0000000 00122445666778
Q ss_pred HHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhc
Q 005232 381 VSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (707)
Q Consensus 381 l~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (707)
+..++..+.-.++ +..+ ++ ...|.. +++++..++..+| +.+++.+...+.+.+.
T Consensus 323 ~p~l~~~l~~~d~-d~~~----~~-~~~r~~-----------------a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~-- 376 (462)
T 1ibr_B 323 VPILTQTLTKQDE-NDDD----DD-WNPCKA-----------------AGVCLMLLATCCE-DDIVPHVLPFIKEHIK-- 376 (462)
T ss_dssp HHHHHHHTTCCCS-SCCT----TC-CSHHHH-----------------HHHHHHHHHHHTT-TTHHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHhccc-cccc----cc-chHHHH-----------------HHHHHHHHHHhcc-HHHHHHHHHHHHHHhc--
Confidence 8877776653321 1111 11 123444 8899999999999 6788888787776642
Q ss_pred CCCCCCcchhhHHHHHHHHhhccCCcc-ccccHHHHHhhcCC-C-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHH
Q 005232 461 GNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVL 537 (707)
Q Consensus 461 ~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~-l-~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l 537 (707)
..+|+.+++++++++++++++..+ -.+.++.+++.+.. + .+++.||.++++++|+|++|+...-....++++++
T Consensus 377 ---~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll 453 (462)
T 1ibr_B 377 ---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (462)
T ss_dssp ---CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHH
T ss_pred ---CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 468999999999999999987633 23344555554332 2 24899999999999999999986310013899999
Q ss_pred HHHHhccC
Q 005232 538 SILTSGMS 545 (707)
Q Consensus 538 ~~l~~~l~ 545 (707)
+.++.+|+
T Consensus 454 ~~Ll~~L~ 461 (462)
T 1ibr_B 454 QCLIEGLS 461 (462)
T ss_dssp HHHHCC--
T ss_pred HHHHHHhc
Confidence 99988764
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.56 E-value=2.5e-12 Score=158.04 Aligned_cols=544 Identities=12% Similarity=0.110 Sum_probs=314.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCC
Q 005232 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE 73 (707)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~ 73 (707)
...+.+.+..+ .++|+..|.+|.+.|.+.-+.+ ..-......|. +.+..+|..|+..|...+..
T Consensus 5 ~~~l~~lL~~l-~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~--d~~~~vR~~A~~~L~~l~~~--- 78 (1230)
T 1u6g_C 5 SYHISNLLEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVSK--- 78 (1230)
T ss_dssp CHHHHHHHHHT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHhc-CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHh---
Confidence 45677778786 6889999999999888765443 22223344444 46788999999999887753
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc---------ccCCccchHHHHHhcCCCC--Cchh
Q 005232 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAE---------DWGGGGIVNWLRDEMNSHP--EFVP 142 (707)
Q Consensus 74 ~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~---------~W~~~~~i~~l~~~~~~~~--~~~~ 142 (707)
++++....+++.|++.+.. .+..+|...+.+++.++...++. .|++ +++.+++.+.+++ ....
T Consensus 79 -~~~~~~~~i~~~Ll~~l~d---~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~--llp~L~~~l~~~~~~~~~~ 152 (1230)
T 1u6g_C 79 -VKEYQVETIVDTLCTNMLS---DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKK--ITGRLTSAIAKQEDVSVQL 152 (1230)
T ss_dssp -SCHHHHHHHHHHHHHHTTC---SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHH--HHHHHHHHHSCCSCHHHHH
T ss_pred -CCHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHH--HHHHHHHHHcCCCchHHHH
Confidence 4666677777777776544 45578999999999988777654 3887 8888888876322 2334
Q ss_pred HHHHHhccchhhcccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh--HHHHHHHHHHHHHHhccCCCCCcccccc
Q 005232 143 GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASH 220 (707)
Q Consensus 143 ~~L~~L~~L~EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~--~~~~~~l~~l~sWi~~~~~~~~~~~~~~ 220 (707)
..+.+|..+++..... + ..+.+.++..+...+.++ .++..+++|+...+.. .+...
T Consensus 153 ~al~~l~~~~~~~~~~---l------------~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~---~~~~~---- 210 (1230)
T 1u6g_C 153 EALDIMADMLSRQGGL---L------------VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS---CGNIV---- 210 (1230)
T ss_dssp HHHHHHHHHHHHTCSS---C------------TTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT---C--------
T ss_pred HHHHHHHHHHHHhHhH---H------------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh---cCHHH----
Confidence 5555665555433211 0 112234444444444432 3455555555444432 11100
Q ss_pred hhHHHHHhcCCCCccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHh
Q 005232 221 PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300 (707)
Q Consensus 221 ~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~ 300 (707)
...++..++..+ ....+. ......+..+..++
T Consensus 211 ----------------------------------------~~~~l~~l~~~L-------~~~~~~-~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 211 ----------------------------------------FVDLIEHLLSEL-------SKNDSM-STTRTYIQCIAAIS 242 (1230)
T ss_dssp ----------------------------------------CTTHHHHHHHHH-------HHTCSS-CSCTTHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHh-------ccCCch-hHHHHHHHHHHHHH
Confidence 011111111111 000000 01112233344433
Q ss_pred hHHHHHHHcCCcchHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHH
Q 005232 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESL 380 (707)
Q Consensus 301 e~~~~~i~~~~~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 380 (707)
......+. +....+++.++.....+++++...++..|..+.+... +.++|++..+
T Consensus 243 ~~~~~~~~---~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~----------------------~~~~~~l~~l 297 (1230)
T 1u6g_C 243 RQAGHRIG---EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP----------------------KEVYPHVSTI 297 (1230)
T ss_dssp HHSSGGGT---TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT----------------------CCCHHHHHHH
T ss_pred HHhHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh----------------------HHHHHhHHHH
Confidence 33222121 1344577777777777778888888888776665221 2456788899
Q ss_pred HHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhc
Q 005232 381 VSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (707)
Q Consensus 381 l~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (707)
+..+++.+.+++++ ..++|+ +. . .+ ..+. .+.+..-. ....+.
T Consensus 298 i~~ll~~l~~d~~~-~~~~d~-~~-~-~~-------------------~~~~-------~~~~~~~~-~~~~~~------ 340 (1230)
T 1u6g_C 298 INICLKYLTYDPNY-NYDDED-ED-E-NA-------------------MDAD-------GGDDDDQG-SDDEYS------ 340 (1230)
T ss_dssp HHHHTTCCCCC---------------------------------------------------------------------
T ss_pred HHHHHHHhCCCCCC-CCcccc-cc-c-cc-------------------cccc-------ccccchhh-cccccc------
Confidence 99999988886543 111110 00 0 00 0000 00000000 000000
Q ss_pred CCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-CC-ChHHHHHHHHHHHHhhHHHHhhC------------
Q 005232 461 GNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP-QQPQLLQTVCLTIGAYSKWFDAA------------ 526 (707)
Q Consensus 461 ~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~-~~~~l~~t~~~~ig~~~~~l~~~------------ 526 (707)
......|+-+++++-++..++...+..-.++++.++..+.. +. .++.+|..++..++.+..-+...
T Consensus 341 ~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 420 (1230)
T 1u6g_C 341 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420 (1230)
T ss_dssp ----CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------
T ss_pred cccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccccc
Confidence 01135799899999999999985443223444555544432 32 47889988888877665433210
Q ss_pred ---C--CCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHH
Q 005232 527 ---S--SDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 600 (707)
Q Consensus 527 ---p--~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l 600 (707)
+ ....+++.+++.+.+.+.+++ .++..++.++..++..+...+.+|++.++..+...+.... -....+...
T Consensus 421 ~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~---~~~~v~~~a 497 (1230)
T 1u6g_C 421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS---SSSNLKIDA 497 (1230)
T ss_dssp CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSS---SCHHHHHHH
T ss_pred ccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCC---CcchHHHHH
Confidence 0 001367778888777787654 4788899999999999988888999999999999887531 134678888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCC-----cccHHHHHH
Q 005232 601 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-----PEAVADAIQ 675 (707)
Q Consensus 601 ~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-----~~p~~~~~~ 675 (707)
+..++.++...+++...+++..++..++. .++.. ..+-....+..++.+++.++. +..+.++++
T Consensus 498 ~~~l~~~~~~~~~~~~~~~l~~llp~L~~----~l~d~-------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 566 (1230)
T 1u6g_C 498 LSCLYVILCNHSPQVFHPHVQALVPPVVA----CVGDP-------FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK 566 (1230)
T ss_dssp HHHHHHHHHSSCGGGGHHHHTTTHHHHHH----HHTCS-------SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhHHHHHHHHHHH----HHccc-------chHHHHHHHHHHHHHHHHhcCcccccccchHHHHH
Confidence 88899888887766666666665555553 44322 111222356677777766543 235677888
Q ss_pred HHhHHHHHHHHhhcCchhHHHHHHHHHhhh
Q 005232 676 RLWPIFKAIFDIRAWDMRTMESLCRACKYA 705 (707)
Q Consensus 676 ~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~ 705 (707)
.+.|.+...+.....+.++-+.+.+++...
T Consensus 567 ~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 567 DLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp HHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 899988887765555667777666666543
No 14
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.30 E-value=2.5e-08 Score=112.23 Aligned_cols=562 Identities=10% Similarity=0.058 Sum_probs=323.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhc---ChhHHHHHHHHhh-cCCCChhHHHHHHHHHHhhhhcCCCCCChhhH
Q 005232 5 NTVKEALNALYHHPDDAVRMQADRWLQDFQH---TIDAWQVADNLLH-DATSNLETLIFCSQTLRSKVQRDVEELPSEAV 80 (707)
Q Consensus 5 ~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~---s~~aw~~~~~LL~-~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~ 80 (707)
..+...+..+ .++|+..|..|-+-|...-. ....|.-....|. .-+.+.++|..++..|...... +...+
T Consensus 10 ~~i~~l~~~l-~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~----~~~~~- 83 (588)
T 1b3u_A 10 YPIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL----VGGPE- 83 (588)
T ss_dssp HHHHHHHHHT-TCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGG----GTSGG-
T ss_pred CcHHHHHHHh-hcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc----cCcHH-
Confidence 4566677776 67899999999988877543 2334553333332 2234568999999998754332 11111
Q ss_pred HHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhcccc-ccCCccchHHHHHhcCCCC-CchhHHHHHhccchhhccc
Q 005232 81 RGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAE-DWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFN 157 (707)
Q Consensus 81 ~~lr~~Ll~~l~~~~-~~~~~v~~qL~~ala~l~~~~~~~-~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE~~~ 157 (707)
....++..+.... .....||...+.++..++...++. .|+. +++.+.+..++.. ........++..+.+.+.
T Consensus 84 --~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~--l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~- 158 (588)
T 1b3u_A 84 --YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS- 158 (588)
T ss_dssp --GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHT--HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-
T ss_pred --HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-
Confidence 1123444444332 346789999999999988765432 2333 4455544443321 122334444444433211
Q ss_pred ccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhh--hHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC--
Q 005232 158 YKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE-- 233 (707)
Q Consensus 158 ~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~--~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~-- 233 (707)
.. ..+.++.++...+.. +.++..+++++..+... ++... ....+++.+...+.++
T Consensus 159 ------~~-----------~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~---~~~~~-~~~~l~~~l~~~~~d~~~ 217 (588)
T 1b3u_A 159 ------SA-----------VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV---LELDN-VKSEIIPMFSNLASDEQD 217 (588)
T ss_dssp ------HH-----------HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHT---SCHHH-HHHTHHHHHHHHHTCSCH
T ss_pred ------HH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---hcHHh-HHHHHHHHHHHHhcCCcH
Confidence 11 123445555555544 35888999999888874 22211 2346777777777765
Q ss_pred ccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCcc
Q 005232 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDE 313 (707)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~~ 313 (707)
.....|+.++..+...... ......+++.+.. +. .+.+.......++.+..+++....-. .
T Consensus 218 ~vr~~a~~~l~~l~~~~~~---------~~~~~~~~~~l~~----~~-~d~~~~vR~~a~~~l~~l~~~~~~~~-----~ 278 (588)
T 1b3u_A 218 SVRLLAVEACVNIAQLLPQ---------EDLEALVMPTLRQ----AA-EDKSWRVRYMVADKFTELQKAVGPEI-----T 278 (588)
T ss_dssp HHHTTHHHHHHHHHHHSCH---------HHHHHHTHHHHHH----HH-TCSSHHHHHHHHHTHHHHHHHHCHHH-----H
T ss_pred HHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHH----Hc-cCCCHHHHHHHHHHHHHHHHHhCccc-----c
Confidence 4567889999888764321 1122222232221 11 23344444455666666655431110 1
Q ss_pred hHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC
Q 005232 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD 393 (707)
Q Consensus 314 ~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d 393 (707)
...+++.++.++..++.++...+...+..+.+.+.. +. .. .++...+++.+...+ .|
T Consensus 279 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------~~--------~~---~~~~~~l~p~l~~~l---~d 335 (588)
T 1b3u_A 279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA---------DC--------RE---NVIMSQILPCIKELV---SD 335 (588)
T ss_dssp HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT---------TT--------HH---HHHHHTHHHHHHHHH---TC
T ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh---------hh--------hh---hHHHHHHHHHHHHHh---cC
Confidence 124567777777788888888888887776653321 00 00 011222222222211 11
Q ss_pred CCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHH
Q 005232 394 YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAA 473 (707)
Q Consensus 394 ~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~ 473 (707)
. . ...|.. +...+..++..+|.+...+.+...+...+. ..++.-++++
T Consensus 336 ~-~---------~~vR~~-----------------a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-----d~~~~Vr~~a 383 (588)
T 1b3u_A 336 A-N---------QHVKSA-----------------LASVIMGLSPILGKDNTIEHLLPLFLAQLK-----DECPEVRLNI 383 (588)
T ss_dssp S-C---------HHHHHH-----------------HHTTGGGGHHHHCHHHHHHHTHHHHHHHHT-----CSCHHHHHHH
T ss_pred C-C---------HHHHHH-----------------HHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-----CCchHHHHHH
Confidence 0 0 134544 666777777777765445555555555442 3456777888
Q ss_pred HHHHHHhhccCCccc--cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HH
Q 005232 474 LFCIRAISTYVSVVE--AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DT 550 (707)
Q Consensus 474 l~~l~~ia~~~~~~~--~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v 550 (707)
+.+++.+.+.+..+. ..++|.+.+.+.. .++++|.+++.++|.++..+.... +.+.+++.+.+.+.++. .+
T Consensus 384 ~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~V 457 (588)
T 1b3u_A 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAED--AKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAI 457 (588)
T ss_dssp HTTCHHHHHHSCHHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcCCcHHH
Confidence 888888887765432 2345555554432 478999999999999998776532 45677788888887763 58
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHH
Q 005232 551 AAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTP 630 (707)
Q Consensus 551 ~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~ 630 (707)
+..|+.++..++....... +.+.++..+..+... -+...|...+++++.+...++.+ .++.. ++..
T Consensus 458 r~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~-----~~~~~R~~a~~~l~~l~~~~~~~---~~~~~----~~~~ 523 (588)
T 1b3u_A 458 REAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD-----PNYLHRMTTLFCINVLSEVCGQD---ITTKH----MLPT 523 (588)
T ss_dssp HHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC-----SCHHHHHHHHHHHHHHHHHHHHH---HHHHH----THHH
T ss_pred HHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHhcCHH---HHHHH----HHHH
Confidence 9999999999998776532 234455555444332 23567888999999888775432 23333 3333
Q ss_pred HHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhhh
Q 005232 631 LQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA 705 (707)
Q Consensus 631 L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~ 705 (707)
|.+.+.... +.-....+..++.+.+.++. + ...+.+.|.+.++++ ..|.+|-+.+|.++...
T Consensus 524 l~~~l~d~~-------~~Vr~~a~~~l~~l~~~~~~-~---~~~~~~~p~l~~l~~--d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 524 VLRMAGDPV-------ANVRFNVAKSLQKIGPILDN-S---TLQSEVKPILEKLTQ--DQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHGGGCSC-------HHHHHHHHHHHHHHGGGSCH-H---HHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHT
T ss_pred HHhhCCCCC-------chHHHHHHHHHHHHHHHhch-h---hhHHHHHHHHHHHcC--CCchhHHHHHHHHHHHh
Confidence 334444321 11222456777877776632 1 122578888888643 35789999999888653
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.22 E-value=7.1e-07 Score=105.20 Aligned_cols=515 Identities=14% Similarity=0.168 Sum_probs=291.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcC-h--------hHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcC--CCCC
Q 005232 7 VKEALNALYHHPDDAVRMQADRWLQDFQHT-I--------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRD--VEEL 75 (707)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s-~--------~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~--w~~l 75 (707)
+...+..+.+.+|+..|+.|-+-|..+-+. + .....+..++.+ .+..+|..|+..+....... |+.+
T Consensus 216 ~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcchhHHHHH
Confidence 334444444677889999888888775542 2 234455566653 46679988887776654321 1101
Q ss_pred ChhhHHHHHHHHHHHHHH-------h-cC-----------CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC
Q 005232 76 PSEAVRGLQDSLNTLLKK-------F-HK-----------GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS 136 (707)
Q Consensus 76 ~~~~~~~lr~~Ll~~l~~-------~-~~-----------~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~ 136 (707)
.+ ....+-..+++.+.. . .. ....++..-+.++..++...+..--+. +++.+.+.+++
T Consensus 294 ~~-~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~--l~~~l~~~l~~ 370 (852)
T 4fdd_A 294 VR-HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPH--ILPLLKELLFH 370 (852)
T ss_dssp TT-THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHH--HHHHHHHHHTC
T ss_pred HH-HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHhcC
Confidence 11 112232333333310 0 01 223567777777877776544222232 55555566654
Q ss_pred CC-CchhHHHHHhccchhhcccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh--HHHHHHHHHHH---HHHhccC
Q 005232 137 HP-EFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFA---SWLRLKH 210 (707)
Q Consensus 137 ~~-~~~~~~L~~L~~L~EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~--~~~~~~l~~l~---sWi~~~~ 210 (707)
.. ......+..|..+.+-.. +.+..+.+.++..+...+..+ .++..+..++. .|+.-.
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~---------------~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~- 434 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCM---------------QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ- 434 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTH---------------HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS-
T ss_pred CCHHHHHHHHHHHHHHHhcch---------------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc-
Confidence 32 234566777776654321 122334566777777776553 47777766665 455321
Q ss_pred CCCCcccccchhHHHHHhcCCCC--ccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHH
Q 005232 211 RIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEED 288 (707)
Q Consensus 211 ~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~ 288 (707)
.... ...++++.+++.|.++ .....|+.+|..+...... .-.+++..+++.++...... +...
T Consensus 435 -~~~~--~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~-------~l~~~l~~ll~~L~~~l~~~-----~~~~ 499 (852)
T 4fdd_A 435 -PPDT--YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT-------ELVPYLAYILDTLVFAFSKY-----QHKN 499 (852)
T ss_dssp -CTTT--THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG-------GGGGGHHHHHHHHHHHHHHC-----CHHH
T ss_pred -hHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH-------hhHhHHHHHHHHHHHHHHHh-----ChHH
Confidence 1111 2357888888888654 5778899999888875432 12334455555444333221 1111
Q ss_pred HHHHHHHHHHHhhHHHHHHHcCCcchHHHHHHHhh---hcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHH
Q 005232 289 VKAIARLFADMGDSYVELIATGSDESMLIVHALLE---VASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAE 365 (707)
Q Consensus 289 ~~~l~~l~~~l~e~~~~~i~~~~~~~~~~~~~ll~---~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~ 365 (707)
...+...+..+++..-..+ ..++.+..++..++. ....++.++ ...++-+..+...+..
T Consensus 500 ~~~~~~ai~~l~~~~~~~~-~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~---------------- 561 (852)
T 4fdd_A 500 LLILYDAIGTLADSVGHHL-NKPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQS---------------- 561 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGG-CCHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGG----------------
T ss_pred HHHHHHHHHHHHHHhhhhh-ccHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhH----------------
Confidence 1122222222222111000 011123344444443 222333344 2456665555554421
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhc-------cCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHh
Q 005232 366 RSRRLQVFRSAYESLVSLVSFRV-------QYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAAS 438 (707)
Q Consensus 366 ~~~~~~~~~~~~~~ll~~l~~k~-------~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~ 438 (707)
.......+++..++..+-... .-|+.++ .+| .++|.. +.+++..++.
T Consensus 562 --~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~---~~d----~~~~~~-----------------~l~~l~~l~~ 615 (852)
T 4fdd_A 562 --GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE---APD----KDFMIV-----------------ALDLLSGLAE 615 (852)
T ss_dssp --GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSC---CCC----THHHHH-----------------HHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccC---CCc----chHHHH-----------------HHHHHHHHHH
Confidence 112223334444443332211 1121111 111 124544 6778888888
Q ss_pred hcChHHHHHHH-----HHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcC-CC-CChHHHHHH
Q 005232 439 VLGGDATLKIL-----YIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQT 511 (707)
Q Consensus 439 ~l~~~~~l~~l-----~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l-~~~~~l~~t 511 (707)
.+|. .+.+++ ...+.+.+ . ..+..-++++..+++.++..+...-.++++.++..+. .+ +..+.+|.+
T Consensus 616 ~l~~-~~~~~~~~~~~~~~l~~~l----~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~ 689 (852)
T 4fdd_A 616 GLGG-NIEQLVARSNILTLMYQCM----Q-DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNN 689 (852)
T ss_dssp HHGG-GGHHHHHTCCHHHHHHHHT----T-CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHH
T ss_pred HHhH-hHHHHhcCCcHHHHHHHHh----C-CCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHH
Confidence 8873 344332 33333332 1 2446678899999999998887665667777776554 23 246899999
Q ss_pred HHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh---HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccC
Q 005232 512 VCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE---DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEG 588 (707)
Q Consensus 512 ~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~---~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~ 588 (707)
+++.+|.++..+..+ ...++..+++.+++-+.+|. .+...|+.++.+++..|...+.||++.++..+...+...
T Consensus 690 a~~alg~i~~~~~~~--~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~- 766 (852)
T 4fdd_A 690 ATWAIGEISIQMGIE--MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNI- 766 (852)
T ss_dssp HHHHHHHHHHHHGGG--GGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHhhHh--HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccc-
Confidence 999999999888542 12377888888877776652 588999999999999999999999999999888887642
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCh
Q 005232 589 SLKVSAEDSLHLVEALSMVITELPQ 613 (707)
Q Consensus 589 ~~~l~~~~~~~l~eai~~vi~~~p~ 613 (707)
-+.+++...+.+++.++..-|+
T Consensus 767 ---~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 767 ---RDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp ---CSSHHHHHHHHHHHHHHHHCGG
T ss_pred ---cccHHHHHHHHHHHHHHHhChH
Confidence 3466799999999999999775
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.18 E-value=4.7e-07 Score=106.78 Aligned_cols=332 Identities=8% Similarity=-0.006 Sum_probs=200.8
Q ss_pred HHHHHHHHHHhhHHHHHHHcCCcchHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHH
Q 005232 290 KAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRR 369 (707)
Q Consensus 290 ~~l~~l~~~l~e~~~~~i~~~~~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 369 (707)
...++.+..++..+. ...+..+++.+......+++.+.+.++..+..+.+.. .
T Consensus 349 ~~a~~~L~~l~~~~~------~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~---------------------~ 401 (861)
T 2bpt_A 349 MSAGACLQLFAQNCG------NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP---------------------D 401 (861)
T ss_dssp HHHHHHHHHHHHHHG------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS---------------------C
T ss_pred HHHHHHHHHHHHHcc------HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC---------------------C
Confidence 344455555544332 1123456677777777777777777766544433210 0
Q ss_pred HHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcCh----HHH
Q 005232 370 LQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG----DAT 445 (707)
Q Consensus 370 ~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~----~~~ 445 (707)
...+.+++..++..++..+.-|. ...|.. +..++..++..+++ ...
T Consensus 402 ~~~~~~~l~~il~~l~~~l~d~~-------------~~vr~~-----------------a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 402 KVQRTYYVHQALPSILNLMNDQS-------------LQVKET-----------------TAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCSC-------------HHHHHH-----------------HHHHHHHHHHHHGGGSCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCc-------------HHHHHH-----------------HHHHHHHHHHHhhhhcCCHHH
Confidence 12445667777877776553221 123333 44555555544432 234
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCc----cccccHHHHHhhc----CCCCChHHHHHHHHHHHH
Q 005232 446 LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV----VEAEVMPQVMALL----PKLPQQPQLLQTVCLTIG 517 (707)
Q Consensus 446 l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~----~~~~~l~~l~~~l----~~l~~~~~l~~t~~~~ig 517 (707)
+..+...+...+. .+++-..+++.++..+++.+.+ .-.++++.+++.+ .+...++.+|.+++.++|
T Consensus 452 ~~~~l~~l~~~l~------~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 452 LPGVVQACLIGLQ------DHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp HHHHHHHHHHHHT------SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc------cChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 5555555554431 2277788999999999888652 2235666666544 322335789999999999
Q ss_pred hhHHHHhhCCCCchhHHHHHHHHHhccCC----------------ChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Q 005232 518 AYSKWFDAASSDPSILASVLSILTSGMST----------------SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYR 581 (707)
Q Consensus 518 ~~~~~l~~~p~~~~~l~~~l~~l~~~l~~----------------~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~ 581 (707)
.+....... ...+++.+++.++..+.. ...++..+..++..++..+...+.||++.++..+.
T Consensus 526 ~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 603 (861)
T 2bpt_A 526 TMVEYATDT--VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFF 603 (861)
T ss_dssp HHHHHCCGG--GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred HHHHHcchh--hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 987654432 112455555544443321 11367789999999999999999999999999999
Q ss_pred HHhhccCCCCCCh-hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHH
Q 005232 582 TAVNGEGSLKVSA-EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 660 (707)
Q Consensus 582 ~~~~~~~~~~l~~-~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 660 (707)
.+++... . ..+...+.+++.++...+. +..+++..++..++..+ +... .......+..++.+
T Consensus 604 ~~l~~~~-----~~~v~~~~~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l----~~~~-------~~vr~~a~~~l~~l 666 (861)
T 2bpt_A 604 RLLEKKD-----SAFIEDDVFYAISALAASLGK-GFEKYLETFSPYLLKAL----NQVD-------SPVSITAVGFIADI 666 (861)
T ss_dssp HHHHSTT-----GGGTHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHHHH----HCTT-------SHHHHHHHHHHHHH
T ss_pred HHHccCC-----CCcHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHh----cccc-------HHHHHHHHHHHHHH
Confidence 8887531 2 5688888899988877542 34466666666555544 3211 11223456677777
Q ss_pred hhhcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhhh
Q 005232 661 FRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA 705 (707)
Q Consensus 661 ~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~ 705 (707)
.+.++ ..+.+++..+.|.+.+.++.-..+.++-+.++.++...
T Consensus 667 ~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l 709 (861)
T 2bpt_A 667 SNSLE--EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDI 709 (861)
T ss_dssp HHHTG--GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHH
T ss_pred HHHhc--hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHH
Confidence 77664 34566777888887777765323466777777766543
No 17
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.13 E-value=1.4e-06 Score=103.05 Aligned_cols=618 Identities=10% Similarity=0.055 Sum_probs=325.5
Q ss_pred CCC--CHHHHHHHHHHHHHHhcC----------hhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChh-hHHH
Q 005232 16 HHP--DDAVRMQADRWLQDFQHT----------IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSE-AVRG 82 (707)
Q Consensus 16 ~~~--d~~~r~~A~~~L~~~q~s----------~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~-~~~~ 82 (707)
.++ ++..|+.|-+.|..+-+. +..+......+.++..+..+|..|+..|.+.+.. ++.. ....
T Consensus 138 ~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~----~~~~~~~~~ 213 (876)
T 1qgr_A 138 TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF----TKANFDKES 213 (876)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG----CHHHHTSHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH----HHHHHHhHH
Confidence 455 788888888777765432 3334445566654323578999999999887653 1111 1112
Q ss_pred HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhcccc---ccC-CccchHHHHHhcCCCC-CchhHHHHHhccchhhcc
Q 005232 83 LQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAE---DWG-GGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVF 156 (707)
Q Consensus 83 lr~~Ll~~l~~~~-~~~~~v~~qL~~ala~l~~~~~~~---~W~-~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE~~ 156 (707)
.++.+++.+.... .....++...+.++..++...+.. .-+ . +++.+...+.... ......++++..+++...
T Consensus 214 ~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~ 291 (876)
T 1qgr_A 214 ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA--LFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (876)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTT--HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 3344566555543 235678889999999888654321 011 2 5555555444322 234456667766655421
Q ss_pred c-----------ccccCChHHHHHHHHHHHHhhHHHHHHHHHhhh---h--hHHHHHHHHHHHHHHhccCCCCCcccccc
Q 005232 157 N-----------YKIAARPERRRQFEKELTSQMEVALSTLTACLH---I--NELKEQVLEAFASWLRLKHRIPGSVLASH 220 (707)
Q Consensus 157 ~-----------~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~---~--~~~~~~~l~~l~sWi~~~~~~~~~~~~~~ 220 (707)
. ...+... .....+..+..-.+.+++.+..... . ..++..+.+|+....... +.. ...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~---~~~--~~~ 365 (876)
T 1qgr_A 292 DLAIEASEAAEQGRPPEHT-SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC---EDD--IVP 365 (876)
T ss_dssp HHHHHHHHHHHHSSCCSSC-CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH---GGG--GHH
T ss_pred hHhhhhccccccCCCccch-hHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC---cHh--hHH
Confidence 0 0000000 0001111222222333333322111 1 136777778877666542 211 124
Q ss_pred hhHHHHHhcCCCC--ccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHH
Q 005232 221 PLVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 298 (707)
Q Consensus 221 ~ll~~~~~~L~~~--~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~ 298 (707)
.+++.+...+.++ ....+|+.++..+...... +...+.+..+++.++. .+ .+.+.......+..+..
T Consensus 366 ~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~------~~~~~~~~~~l~~l~~---~l--~d~~~~vr~~a~~~l~~ 434 (876)
T 1qgr_A 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP------SQLKPLVIQAMPTLIE---LM--KDPSVVVRDTAAWTVGR 434 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH------HHHHHHHHHHHHHHHH---HH--TCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHHHHH---Hh--CCCCHHHHHHHHHHHHH
Confidence 5666666777655 4678888888877743210 0011233333443322 22 12333334445556666
Q ss_pred HhhHHHHHHHcCCcchHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHH
Q 005232 299 MGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYE 378 (707)
Q Consensus 299 l~e~~~~~i~~~~~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (707)
+++.....+ ...+.+..+++.++.....+ ..+...+......+.+...+.. . .+++.. ....+.+.|++.
T Consensus 435 ~~~~~~~~~-~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~-~---~~~~~~----~~~~~~l~~~~~ 504 (876)
T 1qgr_A 435 ICELLPEAA-INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAA-D---VADDQE----EPATYCLSSSFE 504 (876)
T ss_dssp HHHHCGGGT-SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTT-S---CTTSCC----CCCCCSSTTTHH
T ss_pred HHHhCchhc-ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcc-c---cccccc----cccchhhhHhHH
Confidence 554432211 02234667777777776654 5555555555445554432100 0 000000 000013556677
Q ss_pred HHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChH--HHHHHHHHHHHHH
Q 005232 379 SLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD--ATLKILYIKFVEG 456 (707)
Q Consensus 379 ~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~--~~l~~l~~~l~~~ 456 (707)
.++..++..+.-+.. ++ ...|.. +.+++..+....|.+ .++..+...+.+.
T Consensus 505 ~il~~L~~~l~~~~~------~~----~~~r~~-----------------~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 557 (876)
T 1qgr_A 505 LIVQKLLETTDRPDG------HQ----NNLRSS-----------------AYESLMEIVKNSAKDCYPAVQKTTLVIMER 557 (876)
T ss_dssp HHHHHHHHHTTSCSS------CS----TTHHHH-----------------HHHHHHHHHHTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCc------ch----hhHHHH-----------------HHHHHHHHHHHCchhhHHHHHHHHHHHHHH
Confidence 778777776644321 00 122333 666777777766632 1222222222222
Q ss_pred Hhhc---CC---CCC---Ccch-hhHHHHHHHHhhccCC-ccccccHHHHHhhcCC-CCC---hHHHHHHHHHHHHhhHH
Q 005232 457 VACC---GN---KHN---EWRP-AEAALFCIRAISTYVS-VVEAEVMPQVMALLPK-LPQ---QPQLLQTVCLTIGAYSK 521 (707)
Q Consensus 457 ~~~~---~~---~~~---~w~~-~Ea~l~~l~~ia~~~~-~~~~~~l~~l~~~l~~-l~~---~~~l~~t~~~~ig~~~~ 521 (707)
+... .+ ... .|.. .+.++.+++.+...+. ..-.++++.+++.+.. +.. .+.++..++.+++.++.
T Consensus 558 l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~ 637 (876)
T 1qgr_A 558 LQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVE 637 (876)
T ss_dssp HHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHH
Confidence 2110 00 011 1222 3577888888888877 4445566666665432 221 14789999999999987
Q ss_pred HHhhCCCCchhHHHHHHHHHhccCCC--hHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHH
Q 005232 522 WFDAASSDPSILASVLSILTSGMSTS--EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLH 599 (707)
Q Consensus 522 ~l~~~p~~~~~l~~~l~~l~~~l~~~--~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 599 (707)
-+...- ..+++.+++.+...+.++ ..++..|..++..++..+...+.||++.++..+.+.+..+ ..+.+.+..
T Consensus 638 ~~~~~~--~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~---~~~~~~~~~ 712 (876)
T 1qgr_A 638 VLGGEF--LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE---NVHRSVKPQ 712 (876)
T ss_dssp HHGGGG--GGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCT---TSCGGGHHH
T ss_pred HHHhhH--HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCc---cccHHhhHH
Confidence 665431 137888888888877543 2488899999999999999899999999999998887652 134567889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchh-----hhHHHHHHHHHhhhcCCc-------
Q 005232 600 LVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRD-----LTVHIDRFAYIFRYVNHP------- 667 (707)
Q Consensus 600 l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~-----~~~~i~~l~~~~~~~~~~------- 667 (707)
.+.++|.++..++.+ ..+++..++.+ |.+.+..... .+++...+ ....++.++.+++.++..
T Consensus 713 ~~~~l~~i~~~~g~~-~~~~l~~~~~~----l~~~~~~~~~-~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~ 786 (876)
T 1qgr_A 713 ILSVFGDIALAIGGE-FKKYLEVVLNT----LQQASQAQVD-KSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPD 786 (876)
T ss_dssp HHHHHHHHHHHHGGG-GGGGHHHHHHH----HHHHHTCCCC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGG
T ss_pred HHHHHHHHHHHhchh-HHHHHHHHHHH----HHHHHhccCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccch
Confidence 999999998877643 33455554444 3344432211 01110111 112345566665554321
Q ss_pred -ccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhh
Q 005232 668 -EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY 704 (707)
Q Consensus 668 -~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~ 704 (707)
..+.+++..+++.+..+......+..+-..++.++..
T Consensus 787 ~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~ 824 (876)
T 1qgr_A 787 VMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGD 824 (876)
T ss_dssp GGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 2334456677777776654321144555555555544
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.11 E-value=8.1e-08 Score=108.01 Aligned_cols=482 Identities=13% Similarity=0.092 Sum_probs=276.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcC-h--hHHH----HHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhh
Q 005232 7 VKEALNALYHHPDDAVRMQADRWLQDFQHT-I--DAWQ----VADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEA 79 (707)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s-~--~aw~----~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~ 79 (707)
+...+..+...+++..|+.|-+.|.++-.. + ..+. +...+.+ +.+..+|..|+..+.....+ +++..
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~--~~~~~~R~~a~~~l~~~~~~----~~~~~ 161 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAG--GDWFTSRTSACGLFSVCYPR----VSSAV 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHT--CSSHHHHHHHGGGHHHHTTT----SCHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHh----cCHHH
Confidence 444555555667889999999999887654 1 1232 3333433 34667899888888775433 44444
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccccc-CCccchHHHHHhcCCCC-CchhHHHHHhccchhhccc
Q 005232 80 VRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW-GGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFN 157 (707)
Q Consensus 80 ~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W-~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE~~~ 157 (707)
+..+...+.+.+. ...+.||...+.+++.++....++.| +. +++.+...++... ......+..|..+.+.+.
T Consensus 162 ~~~l~~~l~~l~~---d~~~~VR~~a~~~l~~l~~~~~~~~~~~~--l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~- 235 (588)
T 1b3u_A 162 KAELRQYFRNLCS---DDTPMVRRAAASKLGEFAKVLELDNVKSE--IIPMFSNLASDEQDSVRLLAVEACVNIAQLLP- 235 (588)
T ss_dssp HHHHHHHHHHHHT---CSCHHHHHHHHHHHHHHHHTSCHHHHHHT--HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhcHHhHHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC-
Confidence 4444443333322 35678999999999998876554333 44 6777776665432 122344555554443321
Q ss_pred ccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhh--HHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC--
Q 005232 158 YKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE-- 233 (707)
Q Consensus 158 ~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~--~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~-- 233 (707)
+. ...+.++.++...+..+ .++..+.+++....... +.+. ....+++.+...+.++
T Consensus 236 ------~~----------~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~~-~~~~l~~~l~~~l~d~~~ 295 (588)
T 1b3u_A 236 ------QE----------DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV---GPEI-TKTDLVPAFQNLMKDCEA 295 (588)
T ss_dssp ------HH----------HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH---CHHH-HHHTHHHHHHHHHTCSSH
T ss_pred ------HH----------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh---Cccc-chhHHHHHHHHHhCCCcH
Confidence 10 01233455555555443 47888888887766532 1111 1245777777888765
Q ss_pred ccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCcc
Q 005232 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDE 313 (707)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~~ 313 (707)
+....|+.++..+........ ........+++.+..+ + .+.+.......+..+..++....... .
T Consensus 296 ~vr~~a~~~l~~~~~~~~~~~-----~~~~~~~~l~p~l~~~---l--~d~~~~vR~~a~~~l~~l~~~~~~~~-----~ 360 (588)
T 1b3u_A 296 EVRAAASHKVKEFCENLSADC-----RENVIMSQILPCIKEL---V--SDANQHVKSALASVIMGLSPILGKDN-----T 360 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCTTT-----HHHHHHHTHHHHHHHH---H--TCSCHHHHHHHHTTGGGGHHHHCHHH-----H
T ss_pred HHHHHHHHHHHHHHHHhChhh-----hhhHHHHHHHHHHHHH---h--cCCCHHHHHHHHHHHHHHHHHhhHhH-----H
Confidence 467888999988886543100 0012233333433221 1 23344444444444444443321110 0
Q ss_pred hHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC
Q 005232 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD 393 (707)
Q Consensus 314 ~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d 393 (707)
...++..++.+...++.++...++..+..+.+.+.. ....+. +++.+...+ .+
T Consensus 361 ~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-----------------~~~~~~-------~lp~l~~~~---~d 413 (588)
T 1b3u_A 361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-----------------RQLSQS-------LLPAIVELA---ED 413 (588)
T ss_dssp HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-----------------HHHHHH-------HHHHHHHHH---TC
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-----------------HHHHHH-------HHHHHHHHh---cC
Confidence 123456666666777788888888877666553210 011112 222222211 11
Q ss_pred CCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHH
Q 005232 394 YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAA 473 (707)
Q Consensus 394 ~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~ 473 (707)
..| ..|.. +.+++..+...+|++.+.+.+...+...+. ..+|.-++++
T Consensus 414 -~~~---------~vr~~-----------------~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~Vr~~a 461 (588)
T 1b3u_A 414 -AKW---------RVRLA-----------------IIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-----DHVYAIREAA 461 (588)
T ss_dssp -SSH---------HHHHH-----------------HHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-----CSSHHHHHHH
T ss_pred -CCc---------hHHHH-----------------HHHHHHHHHHHcCHHHHHHHHHHHHHHHhc-----CCcHHHHHHH
Confidence 111 23444 777787777777754333344455544432 3568888999
Q ss_pred HHHHHHhhccCCccc--cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HH
Q 005232 474 LFCIRAISTYVSVVE--AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DT 550 (707)
Q Consensus 474 l~~l~~ia~~~~~~~--~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v 550 (707)
+.+++.+++.+..+. ...+|.+.+.+. ..++.+|.+++.++|.++..+.... +++.+++.+.+.+.++. .+
T Consensus 462 ~~~l~~l~~~~~~~~~~~~llp~l~~~~~--~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~V 535 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEWAHATIIPKVLAMSG--DPNYLHRMTTLFCINVLSEVCGQDI----TTKHMLPTVLRMAGDPVANV 535 (588)
T ss_dssp HHHHHHHHHHHCHHHHHHHTHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHHHHH----HHHHTHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHhhCCCCCchH
Confidence 999999998876532 234444443221 2368999999999999998877543 78888899988887763 59
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHH
Q 005232 551 AAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (707)
Q Consensus 551 ~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (707)
+..++.++.+++........+ +.++..+..+.+. -+.+.|....++++.+
T Consensus 536 r~~a~~~l~~l~~~~~~~~~~--~~~~p~l~~l~~d-----~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 536 RFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQD-----QDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCHHHHH--HHHHHHHHHHTTC-----SSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhchhhhH--HHHHHHHHHHcCC-----CchhHHHHHHHHHHHh
Confidence 999999999998765443221 3444555554332 2466777777777654
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.00 E-value=1.8e-06 Score=105.92 Aligned_cols=505 Identities=13% Similarity=0.151 Sum_probs=265.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcC--hh---------HHHHHH----HHhhcCCCChhHHHHHHHHHHhhhhc
Q 005232 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHT--ID---------AWQVAD----NLLHDATSNLETLIFCSQTLRSKVQR 70 (707)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s--~~---------aw~~~~----~LL~~~~~~~~v~~faa~~L~~ki~~ 70 (707)
.+.+.+-.....+++..|..|-.-|.++-.. +. .|.-.. ..+.+ +.+..+|..|..+|...+..
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHH
Confidence 3444444444556667788887777776532 22 354332 22322 35668899999998887754
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC--CchhHHHHHh
Q 005232 71 DVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP--EFVPGFLELL 148 (707)
Q Consensus 71 ~w~~l~~~~~~~lr~~Ll~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~--~~~~~~L~~L 148 (707)
.-..+.+ ....+-..++..+. ...+.||.+.+.+++.++....+...+. +++.+++.+.... ......++.+
T Consensus 165 ~~~~l~~-~~~~ll~~l~~~L~---~~~~~vR~~a~~al~~l~~~~~~~~~~~--~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 165 QGGLLVN-FHPSILTCLLPQLT---SPRLAVRKRTIIALGHLVMSCGNIVFVD--LIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp TCSSCTT-THHHHHHHHGGGGG---CSSHHHHHHHHHHHHHHTTTC----CTT--HHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred hHhHHHH-HHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHhcCHHHHHH--HHHHHHHHhccCCchhHHHHHHHHH
Confidence 2223333 23333333333332 2456899999999999887654434444 6677766554321 1222334444
Q ss_pred ccchhhcccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhh--hHHHHHHHHHHHHHHhccCCCCCccc-ccchhHHH
Q 005232 149 TVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVL-ASHPLVLT 225 (707)
Q Consensus 149 ~~L~EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~--~~~~~~~l~~l~sWi~~~~~~~~~~~-~~~~ll~~ 225 (707)
..+.+-+.. .+..+.+.++.++...+.. ++++..++.++..|+... +...- ....+++.
T Consensus 239 ~~l~~~~~~---------------~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~l~~li~~ 300 (1230)
T 1u6g_C 239 AAISRQAGH---------------RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC---PKEVYPHVSTIINI 300 (1230)
T ss_dssp HHHHHHSSG---------------GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT---TCCCHHHHHHHHHH
T ss_pred HHHHHHhHH---------------HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC---hHHHHHhHHHHHHH
Confidence 444332211 0122334456666655543 368899999999999853 22210 13456777
Q ss_pred HHhcCCCC-c--------------------------------------cHHHHHHHHHHHHhhhccCCCCCCCCcHhHHH
Q 005232 226 ALSSLHSE-I--------------------------------------LSEASVNVISELIHYSAAGSSGGATVNMPLIQ 266 (707)
Q Consensus 226 ~~~~L~~~-~--------------------------------------~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~ 266 (707)
++..+..+ + ....|++++..++.... +...+++.
T Consensus 301 ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-------~~~~~~~~ 373 (1230)
T 1u6g_C 301 CLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-------EMLPEFYK 373 (1230)
T ss_dssp HTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCC-------TTHHHHHT
T ss_pred HHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-------hHHHHHHH
Confidence 77766421 1 12334445544443110 00112222
Q ss_pred HHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHH-------------------HHHHHcCCcchHHHHHHHhhhccc
Q 005232 267 VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSY-------------------VELIATGSDESMLIVHALLEVASH 327 (707)
Q Consensus 267 ~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~-------------------~~~i~~~~~~~~~~~~~ll~~~~~ 327 (707)
.+++.++ ..+ .+.+++......+.+..+.... ...+.. ....+++.++.....
T Consensus 374 ~l~~~l~---~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~ll~~l~~~l~~ 445 (1230)
T 1u6g_C 374 TVSPALI---SRF--KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS---QVPNIVKALHKQMKE 445 (1230)
T ss_dssp TTHHHHH---STT--SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHH---HTTHHHHHHHHHTTC
T ss_pred HHHHHHH---HHc--CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHH---HhhHHHHHHHHHhcc
Confidence 2222111 111 1222222222333332222211 000100 122445555665666
Q ss_pred CchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHH
Q 005232 328 PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKH 407 (707)
Q Consensus 328 ~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~ 407 (707)
++..+...++.-...+.+... ..+.+++.+++..++..+.-+.. . ..
T Consensus 446 ~~~~vr~~~~~~L~~l~~~~~----------------------~~l~~~l~~ll~~l~~~L~d~~~----~-------~~ 492 (1230)
T 1u6g_C 446 KSVKTRQCCFNMLTELVNVLP----------------------GALTQHIPVLVPGIIFSLNDKSS----S-------SN 492 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHHST----------------------TTTGGGHHHHHHHHHHHTTCSSS----C-------HH
T ss_pred CCHHHHHHHHHHHHHHHHHch----------------------hhhHHHHHHHHHHHHHHHcCCCC----c-------ch
Confidence 666666555444333333211 01223455666666655543221 1 11
Q ss_pred hhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHH---HHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccC
Q 005232 408 TRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDAT---LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYV 484 (707)
Q Consensus 408 ~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~---l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~ 484 (707)
.|.+ ....+..+....|++.+ ++.+...+...+ . ..+|+-...++.+++.+++.+
T Consensus 493 v~~~-----------------a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l----~-d~~~~v~~~al~~l~~l~~~~ 550 (1230)
T 1u6g_C 493 LKID-----------------ALSCLYVILCNHSPQVFHPHVQALVPPVVACV----G-DPFYKITSEALLVTQQLVKVI 550 (1230)
T ss_dssp HHHH-----------------HHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH----T-CSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----------------HHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH----c-ccchHHHHHHHHHHHHHHHHh
Confidence 2333 44445444455565433 222333333322 1 356766667788888888765
Q ss_pred Cc-------cccccHHHHHh----hcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHH
Q 005232 485 SV-------VEAEVMPQVMA----LLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAA 553 (707)
Q Consensus 485 ~~-------~~~~~l~~l~~----~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~~v~~~ 553 (707)
.+ .-.++++.+++ .+..-..++.+|.++++.+|.++......-. .+++.+++.+...+.+.. .+..
T Consensus 551 ~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~--~~~~~~l~~L~~~l~~e~-~r~~ 627 (1230)
T 1u6g_C 551 RPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLG--SDLPNTLQIFLERLKNEI-TRLT 627 (1230)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCC--THHHHHHHHHHHHTTSSS-HHHH
T ss_pred cCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhh--hhHHHHHHHHHHHhccch-hHHH
Confidence 54 11234444444 4433335789999999999999887765322 378999999998888766 6778
Q ss_pred HHHHHHHHHHHhh-hhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCCh
Q 005232 554 AALAFRHICDDCR-KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (707)
Q Consensus 554 Aa~al~~l~~~c~-~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (707)
+..++..++.... ..+.++++.++..+...+.. -+...|...+++++.++...+.
T Consensus 628 ~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~-----~~~~~r~~a~~al~~l~~~~~~ 683 (1230)
T 1u6g_C 628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK-----NQRALKLGTLSALDILIKNYSD 683 (1230)
T ss_dssp HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS-----CCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHhcccc
Confidence 8888888775321 13446777777777766553 2366788999999999988763
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.34 E-value=0.00023 Score=79.75 Aligned_cols=462 Identities=13% Similarity=0.109 Sum_probs=230.7
Q ss_pred HcCCCCHHHHHHHHHHHHHHhc-ChhHHHHH-HHHhhc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHH
Q 005232 14 LYHHPDDAVRMQADRWLQDFQH-TIDAWQVA-DNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTL 90 (707)
Q Consensus 14 ly~~~d~~~r~~A~~~L~~~q~-s~~aw~~~-~~LL~~-~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~ 90 (707)
+..++|...|+-+--++..+-+ .++.-..+ ..|..+ .+.++.+|-.|..+|-+.. .++-...+-..+...
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l~~~l~~~ 129 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEYLCEPLRKC 129 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHH
Confidence 3355677777777777776554 34432222 222211 1345667777766665432 333334444444443
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhccchhhcccc-cccCChHHHH
Q 005232 91 LKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNY-KIAARPERRR 168 (707)
Q Consensus 91 l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE~~~~-~~~~~~~~r~ 168 (707)
+. ..++.||++-+.++..++... |+.+++.++++.+.+.+++.. ......+..|..+.++-... ...+.
T Consensus 130 L~---d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~----- 200 (591)
T 2vgl_B 130 LK---DEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN----- 200 (591)
T ss_dssp SS---CSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH-----
T ss_pred cC---CCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc-----
Confidence 33 357899999999999887744 445653236677777776432 23345556665555442211 11110
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC--ccHHHHHHHHHHH
Q 005232 169 QFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISEL 246 (707)
Q Consensus 169 ~~~~~l~~~~~~Vl~~l~~~l~~~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~~i 246 (707)
......++..+... ++-.+..+++.+..+. |.+.-....+++.+...+++. .+.-.|+.++..+
T Consensus 201 ------~~~~~~Ll~~l~~~--~~~~q~~il~~l~~l~------~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 201 ------PQNINKLLTALNEC--TEWGQIFILDCLSNYN------PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp ------HHHHHHHHHHHHHC--CHHHHHHHHHHHHTSC------CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred ------HHHHHHHHHcCCCC--CchHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 01112222222211 1123445555543221 111112346777788888754 4556667776666
Q ss_pred HhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCCcchHHHHHHHhhhcc
Q 005232 247 IHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVAS 326 (707)
Q Consensus 247 i~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~~~~~~~~~~ll~~~~ 326 (707)
...... ....++.+...+....-.+. +.|.+.-....+.+..++..+ ++.+...+..+ .|..
T Consensus 267 ~~~~~~--------~~~~~~~~~~~~~~~L~~L~--~~d~~vr~~aL~~l~~i~~~~-------p~~~~~~~~~~-~~~~ 328 (591)
T 2vgl_B 267 LELLPK--------DSDYYNMLLKKLAPPLVTLL--SGEPEVQYVALRNINLIVQKR-------PEILKQEIKVF-FVKY 328 (591)
T ss_dssp CCSCCB--------TTBSHHHHHHHTHHHHHHHT--TSCHHHHHHHHHHHHHHHHHC-------CSTTTTCTTTT-SCCT
T ss_pred hhccCC--------CHHHHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHhC-------hHHHHHHHHhh-eecc
Confidence 432100 01122222222221111122 234433222334444444332 22111111111 2333
Q ss_pred cCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHH
Q 005232 327 HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFK 406 (707)
Q Consensus 327 ~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~ 406 (707)
+.+..|...+++.++.+.. +. ... .++..+...+. +. | .
T Consensus 329 ~d~~~Ir~~al~~L~~l~~-------------~~-----------nv~----~iv~~L~~~l~---~~-----d-----~ 367 (591)
T 2vgl_B 329 NDPIYVKLEKLDIMIRLAS-------------QA-----------NIA----QVLAELKEYAT---EV-----D-----V 367 (591)
T ss_dssp TSCHHHHHHHHHHHHHTCC-------------SS-----------THH----HHHHHHHHHTT---SS-----C-----H
T ss_pred CChHHHHHHHHHHHHHHCC-------------hh-----------hHH----HHHHHHHHHHh---cC-----C-----H
Confidence 3346788888887766532 10 111 23333332221 11 1 1
Q ss_pred HhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcCh--HHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccC
Q 005232 407 HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYV 484 (707)
Q Consensus 407 ~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~ 484 (707)
++|.. +...+..++...++ +.++..+.+.+.. ..+|-..|+ +.++..+....
T Consensus 368 ~~r~~-----------------~v~aI~~la~~~~~~~~~~v~~Ll~ll~~--------~~~~v~~e~-i~~l~~ii~~~ 421 (591)
T 2vgl_B 368 DFVRK-----------------AVRAIGRCAIKVEQSAERCVSTLLDLIQT--------KVNYVVQEA-IVVIRDIFRKY 421 (591)
T ss_dssp HHHHH-----------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------CCHHHHHHH-HHHHHHHHHHS
T ss_pred HHHHH-----------------HHHHHHHHHHhChhHHHHHHHHHHHHHcc--------cchHHHHHH-HHHHHHHHHHC
Confidence 36666 66677666655542 3455555554432 244665565 55777777665
Q ss_pred CccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC-ChHHHHHHHHHHHHHHH
Q 005232 485 SVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICD 563 (707)
Q Consensus 485 ~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~-~~~v~~~Aa~al~~l~~ 563 (707)
+......++.+.+.+.... .|.++.++++++|.|++++.. .+.++..+.+.+.. +..++..+..|+.++..
T Consensus 422 p~~~~~~v~~L~~~l~~~~-~~~~~~~~~wilGey~~~~~~-------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 422 PNKYESIIATLCENLDSLD-EPDARAAMIWIVGEYAERIDN-------ADELLESFLEGFHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp CSSCCTTHHHHHHTTTTCC-SHHHHHHHHHHHHTTCTTCTT-------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHcccccccC-------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 5544456777777665543 688899999999999987753 34566666655533 44588899999999886
Q ss_pred HhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHH
Q 005232 564 DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (707)
Q Consensus 564 ~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~ 605 (707)
.+.... ...++.+...... + ..+.+.|.+..+..+
T Consensus 494 ~~p~~~----~~~i~~ll~~~~~-d--~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 494 KKPSET----QELVQQVLSLATQ-D--SDNPDLRDRGYIYWR 528 (591)
T ss_dssp TCCSTT----HHHHHHHHHHHHT-T--CCCHHHHHHHHHHHT
T ss_pred cCchHH----HHHHHHHHHHhhh-c--CCChHHHHHHHHHHH
Confidence 543322 2233322222211 1 234566766666554
No 21
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.24 E-value=6.2e-05 Score=74.13 Aligned_cols=187 Identities=11% Similarity=0.139 Sum_probs=133.0
Q ss_pred CCCcchhhHHHHHHHH-hhccCCccc--cccHHHHHhhcCC-C--CChHHHHHHHHHHHHhhHHHHhhCCCCc-hhHHHH
Q 005232 464 HNEWRPAEAALFCIRA-ISTYVSVVE--AEVMPQVMALLPK-L--PQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASV 536 (707)
Q Consensus 464 ~~~w~~~Ea~l~~l~~-ia~~~~~~~--~~~l~~l~~~l~~-l--~~~~~l~~t~~~~ig~~~~~l~~~p~~~-~~l~~~ 536 (707)
+.+|+++-+++-.+.. +.++.+.-. ..-...+++.|.. + ..|+.|+..++.++|.+++.+.. +... .|...+
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~~~y~~~l 105 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFSKDYVSLV 105 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-ccccHHHHHHH
Confidence 5789999999999999 876644321 1112344443322 3 35899999999999999988861 2233 489999
Q ss_pred HHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChH
Q 005232 537 LSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (707)
Q Consensus 537 l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 614 (707)
++.++..+.+.. .|+.+|..|+..||+.+..... +|++.++..+...+.+. +...+...+..+++++...+..
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-----~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-----TPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-----SHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHHcCCc
Confidence 999999988764 4889999999999998866332 44999999988887652 4678999999999999887631
Q ss_pred HHHHHHHHhh-hhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC
Q 005232 615 DAKKALEMLC-LPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (707)
Q Consensus 615 ~~~~~l~~l~-~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 665 (707)
...+..++ .+++..|.+++....+ . -....++.++.+.+.++
T Consensus 181 --~~~l~~~l~~~iip~l~~~l~D~~~-----~--VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 181 --YSTLQRYLKDEVVPIVIQIVNDTQP-----A--IRTIGFESFAILIKIFG 223 (249)
T ss_dssp --SHHHHHHHTTTHHHHHHHHHTCSSH-----H--HHHHHHHHHHHHHHHHC
T ss_pred --chhHHHHHHHHHHHHHHHHhcCCCH-----H--HHHHHHHHHHHHHHHhC
Confidence 12334455 6677777777764421 1 22356788888888775
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.15 E-value=1.1e-05 Score=79.41 Aligned_cols=178 Identities=12% Similarity=0.130 Sum_probs=122.7
Q ss_pred CCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-C--CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 005232 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (707)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l--~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l 540 (707)
+.+|+.+.+++..+..+.+..+.-....+..+++.|.. + ..++.|+..++.++|.++.-+... ...+++.+++.+
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~~~~~~~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR--FSNYASACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG--GHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Confidence 57899999999999999887543222223444544332 2 248999999999999999877643 224888999999
Q ss_pred HhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChH-HHHH
Q 005232 541 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV-DAKK 618 (707)
Q Consensus 541 ~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~-~~~~ 618 (707)
+..+.+++ .++.+|+.|+..++..+ .++.++..+...+.. -+...+..++..++.++....++ ....
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~~-----~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLSN-----KNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 99998864 58999999999988743 356677777776654 24678999999999999887544 2345
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC
Q 005232 619 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (707)
Q Consensus 619 ~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 665 (707)
++..++.. |..++.... ..-....++.++.+.+.++
T Consensus 173 ~l~~l~p~----l~~~l~D~~-------~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 173 LLKLLTTS----LVKTLNEPD-------PTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHH----HHHHHTSSC-------HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH----HHHHhcCCC-------hHHHHHHHHHHHHHHHHcC
Confidence 55554444 445554322 1122245677777766664
No 23
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.84 E-value=0.0024 Score=76.03 Aligned_cols=161 Identities=9% Similarity=0.042 Sum_probs=108.4
Q ss_pred CcchhhHHHHHHHHhhccCCccc-cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHh---------hCCCCchhHHH
Q 005232 466 EWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFD---------AASSDPSILAS 535 (707)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~---------~~p~~~~~l~~ 535 (707)
+-.-+-+++++++.+++.+.++. .+.++.+++.+. .++++|+.+++..+.++++... .......+++.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~--d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 548 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQ--TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEI 548 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHH
T ss_pred CceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHH
Confidence 34456789999999999874321 123344444433 2379999999999999876322 00011248899
Q ss_pred HHHHHHhccCCC----hH--HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHh
Q 005232 536 VLSILTSGMSTS----ED--TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (707)
Q Consensus 536 ~l~~l~~~l~~~----~~--v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (707)
+++.++..++.. .+ ....+..++.+++....+.+.||++.+++.+...+...-...-+...+.+++++++.++.
T Consensus 549 ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~ 628 (960)
T 1wa5_C 549 LLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILN 628 (960)
T ss_dssp HHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 998888777653 11 346788999999999999999999999988877765410001134456779999999999
Q ss_pred cCChHHHHHHHHHhhhhhH
Q 005232 610 ELPQVDAKKALEMLCLPVV 628 (707)
Q Consensus 610 ~~p~~~~~~~l~~l~~p~~ 628 (707)
...++....+...++.++.
T Consensus 629 ~~~~~~~~~~~~~~~p~~~ 647 (960)
T 1wa5_C 629 YTQRQNLPLLVDSMMPTFL 647 (960)
T ss_dssp TSCGGGHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHH
Confidence 9666655555555554433
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.81 E-value=0.079 Score=59.34 Aligned_cols=458 Identities=12% Similarity=0.075 Sum_probs=219.4
Q ss_pred CCCHHHHHHHHHHHHHHhc-ChhH-HHHHHHHhhc-CCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHHH
Q 005232 17 HPDDAVRMQADRWLQDFQH-TIDA-WQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKK 93 (707)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~-s~~a-w~~~~~LL~~-~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~~ 93 (707)
++|...|+-.--++..+-+ .++. -.++..|..+ .+.++.+|-.|+.+|-+.. +++-...+-..+...+..
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~~ 153 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLKT 153 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHcC
Confidence 4455555555555555543 3432 1122222211 1345566666666665542 222223333344444433
Q ss_pred hcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhccchhhcccccccCChHHHHHHHH
Q 005232 94 FHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKIAARPERRRQFEK 172 (707)
Q Consensus 94 ~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE~~~~~~~~~~~~r~~~~~ 172 (707)
.++.||++-+.++..++...+. .=++ +++.+.+.+.... ......+..|..+.+.- + ....
T Consensus 154 ---~~~~VRk~A~~al~~l~~~~p~-~v~~--~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~--------~----~~~~ 215 (618)
T 1w63_A 154 ---SNSYLRKKAALCAVHVIRKVPE-LMEM--FLPATKNLLNEKNHGVLHTSVVLLTEMCERS--------P----DMLA 215 (618)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCGG-GGGG--GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH--------H----HHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHChH-HHHH--HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC--------h----HHHH
Confidence 6789999999999988875442 2222 4455555554321 22344455555543220 1 1123
Q ss_pred HHHHhhHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCC------C-
Q 005232 173 ELTSQMEVALSTLTACLH-------------INELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLH------S- 232 (707)
Q Consensus 173 ~l~~~~~~Vl~~l~~~l~-------------~~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~------~- 232 (707)
.+....+.++.+|.+... ++-.+..+++++....... | + ....++..+...+. +
T Consensus 216 ~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~---~-~--~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND---D-D--SSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC---H-H--HHHTTHHHHHHHHHTSCCSSTH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC---H-H--HHHHHHHHHHHHHhccccccch
Confidence 344556777777766432 2235566777776554321 1 0 01122333322221 1
Q ss_pred -CccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhHHHHHHHcCC
Q 005232 233 -EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGS 311 (707)
Q Consensus 233 -~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~~~~~i~~~~ 311 (707)
..+.-.|+.++..+ .. ...+.......+. .+... .|.+.-....+.+..++...+..+.+
T Consensus 290 ~~aV~~ea~~~i~~l---~~---------~~~l~~~a~~~L~----~~L~~-~d~~vr~~aL~~L~~i~~~~p~~~~~-- 350 (618)
T 1w63_A 290 GNAILYETVLTIMDI---KS---------ESGLRVLAINILG----RFLLN-NDKNIRYVALTSLLKTVQTDHNAVQR-- 350 (618)
T ss_dssp HHHHHHHHHHHHHHS---CC---------CHHHHHHHHHHHH----HHHTC-SSTTTHHHHHHHHHHHHHHHHHHHGG--
T ss_pred HHHHHHHHHHHHHhc---CC---------CHHHHHHHHHHHH----HHHhC-CCCchHHHHHHHHHHHHhhCHHHHHH--
Confidence 01222333333321 11 1122221112111 11111 22222222335556666665554432
Q ss_pred cchHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCC
Q 005232 312 DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYP 391 (707)
Q Consensus 312 ~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p 391 (707)
....++.|...++..|...+++-.+.+.. +. .+..+..+++..+-.
T Consensus 351 -----~~~~i~~~l~d~d~~Ir~~alelL~~l~~-------------~~-----------nv~~iv~eL~~~l~~----- 396 (618)
T 1w63_A 351 -----HRSTIVDCLKDLDVSIKRRAMELSFALVN-------------GN-----------NIRGMMKELLYFLDS----- 396 (618)
T ss_dssp -----GHHHHHHGGGSSCHHHHHHHHHHHHHHCC-------------SS-----------STHHHHHHHHHHHHH-----
T ss_pred -----HHHHHHHHccCCChhHHHHHHHHHHHHcc-------------cc-----------cHHHHHHHHHHHHHh-----
Confidence 34566778888888999998886555432 00 112222333332211
Q ss_pred CCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcCh--HHHHHHHHHHHHHHHhhcCCCCCCcch
Q 005232 392 QDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRP 469 (707)
Q Consensus 392 ~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~ 469 (707)
. | .+||.. +...+..++....+ ..++..+.+.+... .++-.
T Consensus 397 ~-------d-----~e~r~~-----------------~v~~I~~la~k~~~~~~~~v~~ll~lL~~~--------~~~v~ 439 (618)
T 1w63_A 397 C-------E-----PEFKAD-----------------CASGIFLAAEKYAPSKRWHIDTIMRVLTTA--------GSYVR 439 (618)
T ss_dssp C-------C-----HHHHHH-----------------HHHHHHHHHHSSCCCHHHHHHHHHHHHHHT--------GGGSC
T ss_pred C-------C-----HHHHHH-----------------HHHHHHHHHHHhCccHHHHHHHHHHHHHhc--------cchhH
Confidence 0 1 246666 77777777776542 45666665555432 12222
Q ss_pred hhHHHHHHHHhhccCCccccccHHHHHhhcCC-CCChHHHHHHHHHHHHhhHHHHhhC------CC--CchhHHHHHHHH
Q 005232 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LPQQPQLLQTVCLTIGAYSKWFDAA------SS--DPSILASVLSIL 540 (707)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~~~~~l~~t~~~~ig~~~~~l~~~------p~--~~~~l~~~l~~l 540 (707)
.| ++..+..+....++-....+..+++.+.. ....+ +...+++++|.|++.+... |. .+..+..++..+
T Consensus 440 ~~-~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~-~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 517 (618)
T 1w63_A 440 DD-AVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQP-LVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESV 517 (618)
T ss_dssp SS-HHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSH-HHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHH-HHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHH
Confidence 22 33444555444443333356667776653 22234 4457999999999988641 10 011344444444
Q ss_pred HhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHH
Q 005232 541 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 606 (707)
Q Consensus 541 ~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~ 606 (707)
+.....+..++..+..|+.++...+.+ ..+.+...+..... ..+.+.|.+..+....
T Consensus 518 l~~~~~~~~vr~~~lta~~Kl~~~~~~----~~~~l~~~L~~~~~-----~~d~evrdRA~~y~~l 574 (618)
T 1w63_A 518 LISNMSTSVTRGYALTAIMKLSTRFTC----TVNRIKKVVSIYGS-----SIDVELQQRAVEYNAL 574 (618)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHTTCSS----CHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhCcc----hHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHH
Confidence 443233334888999999898775532 22333333333322 2456777777765543
No 25
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.73 E-value=0.0013 Score=70.79 Aligned_cols=256 Identities=12% Similarity=0.039 Sum_probs=144.2
Q ss_pred hhhHHHHHHhhcCh----HHHHHHHHHHHHHHHhhcCCCCC--CcchhhHHHHHHHHhhccCCcc-ccccHHHHHhhc--
Q 005232 429 VADVLIDAASVLGG----DATLKILYIKFVEGVACCGNKHN--EWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALL-- 499 (707)
Q Consensus 429 ~~d~l~~~~~~l~~----~~~l~~l~~~l~~~~~~~~~~~~--~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l-- 499 (707)
++.++..++...++ ..+++.+.+.+. +. ++..+++++.+++.+.+....+ ...+++.+++.+
T Consensus 109 ~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~---------~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~ 179 (462)
T 1ibr_B 109 ASQCVAGIACAEIPVNQWPELIPQLVANVT---------NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQ 179 (462)
T ss_dssp HHHHHHHHHHHHGGGTCCTTHHHHHHHHHH---------CTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHhc---------cCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHH
Confidence 55566555554332 235554444442 23 7888999999999999876432 234445555443
Q ss_pred --CCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHH-H
Q 005232 500 --PKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLD-G 575 (707)
Q Consensus 500 --~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~-~ 575 (707)
..-..++.||..++++++.+..++..+.....+.+.+++.+...+.++. .++..++.+|..+++.+.+.+.+|++ .
T Consensus 180 ~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~ 259 (462)
T 1ibr_B 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA 259 (462)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTT
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211268999999999998766555332111112234555555554442 48899999999999999888889998 8
Q ss_pred HHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCCh----------------HHHHHHHHHhhhhhHHHHHHHHhcCC
Q 005232 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ----------------VDAKKALEMLCLPVVTPLQEIINQGP 639 (707)
Q Consensus 576 l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~----------------~~~~~~l~~l~~p~~~~L~~~~~~~~ 639 (707)
++..+...+.. .+.+.+...++.++.+...... ......+...+..++..+-+.+....
T Consensus 260 l~~~~~~~~~~-----~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d 334 (462)
T 1ibr_B 260 LFAITIEAMKS-----DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334 (462)
T ss_dssp HHHHHHHHHHC-----SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcC-----CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcc
Confidence 88877766543 3466677888877777654200 00001222223333333444444321
Q ss_pred CcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhhh
Q 005232 640 EILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA 705 (707)
Q Consensus 640 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~ 705 (707)
....++.........+.++.+....+ + .++..++|.+.+.++. .+..+-+.++.++...
T Consensus 335 ~d~~~~~~~~r~~a~~~L~~l~~~~~--~---~~~~~~~~~l~~~l~~--~~~~~r~aal~~l~~l 393 (462)
T 1ibr_B 335 ENDDDDDWNPCKAAGVCLMLLATCCE--D---DIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCI 393 (462)
T ss_dssp SSCCTTCCSHHHHHHHHHHHHHHHTT--T---THHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHT
T ss_pred cccccccchHHHHHHHHHHHHHHhcc--H---HHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHH
Confidence 11111111112233455555544442 2 3344566776666643 4556777777776643
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.60 E-value=0.089 Score=57.60 Aligned_cols=382 Identities=13% Similarity=0.089 Sum_probs=195.7
Q ss_pred HHHHHhcCCC--CccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHH-HHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHH
Q 005232 223 VLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADM 299 (707)
Q Consensus 223 l~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~-~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l 299 (707)
++.++..|.+ ++....|+.+|..+++..... ....++. .+++.++. .+ ...++.+.....+..+..+
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~------~~~~~~~~g~v~~Lv~---lL-~~~~~~~v~~~A~~~L~~l 145 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSP------PIEEVIQSGVVPRFVQ---FL-TREDFPQLQFEAAWALTNI 145 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSC------CHHHHHHTTCHHHHHH---HH-TCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc------hHHHHHHCCCHHHHHH---Hh-CCCCCHHHHHHHHHHHHHH
Confidence 4445555554 456678888898888643210 1111221 12222222 22 2222244444455556555
Q ss_pred hhH---HHHHHHcCCcchHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHH
Q 005232 300 GDS---YVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA 376 (707)
Q Consensus 300 ~e~---~~~~i~~~~~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (707)
+.. ....+.+. ..++.++.+...++.++...++..+..+...-. .....+..
T Consensus 146 ~~~~~~~~~~~~~~-----g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-------------------~~~~~i~~- 200 (528)
T 4b8j_A 146 ASGTSENTKVVIDH-----GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP-------------------KCRDLVLA- 200 (528)
T ss_dssp HTSCHHHHHHHHHT-----THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH-------------------HHHHHHHH-
T ss_pred hCCCHHHHHHHHhC-----CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh-------------------hhHHHHHH-
Confidence 542 22222221 356777777778888888888887766653100 00001100
Q ss_pred HHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcCh--HHHHHHHHHHHH
Q 005232 377 YESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFV 454 (707)
Q Consensus 377 ~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~ 454 (707)
...+..++..+.... + ...|.. +..++..++..-+. ..........|.
T Consensus 201 -~g~l~~Ll~lL~~~~-----~-------~~v~~~-----------------a~~~L~~L~~~~~~~~~~~~~~~l~~L~ 250 (528)
T 4b8j_A 201 -NGALLPLLAQLNEHT-----K-------LSMLRN-----------------ATWTLSNFCRGKPQPSFEQTRPALPALA 250 (528)
T ss_dssp -TTCHHHHHHTCCTTC-----C-------HHHHHH-----------------HHHHHHHHHCSSSCCCHHHHTTHHHHHH
T ss_pred -CCcHHHHHHHHhcCC-----C-------HHHHHH-----------------HHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 113334443332111 1 122333 56666666543211 111111223333
Q ss_pred HHHhhcCCCCCCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhh----
Q 005232 455 EGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA---- 525 (707)
Q Consensus 455 ~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~---- 525 (707)
..+ . ..++.-++.++.+++.++...... +...++.+++.+.. .++.++..++.++|.++.--..
T Consensus 251 ~lL----~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~ 323 (528)
T 4b8j_A 251 RLI----H-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--PSPSVLIPALRTVGNIVTGDDAQTQC 323 (528)
T ss_dssp HHT----T-CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHH----C-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC--CChhHHHHHHHHHHHHHcCCHHHHHH
Confidence 332 1 356788899999999998764332 12456777776644 2588999999999988641110
Q ss_pred --CCCCchhHHHHHHHHHhccCCC--hHHHHHHHHHHHHHHHHhhh---hhc--CCHHHHHHHHHHHhhccCCCCCChhh
Q 005232 526 --ASSDPSILASVLSILTSGMSTS--EDTAAAAALAFRHICDDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAED 596 (707)
Q Consensus 526 --~p~~~~~l~~~l~~l~~~l~~~--~~v~~~Aa~al~~l~~~c~~---~l~--~~~~~l~~~~~~~~~~~~~~~l~~~~ 596 (707)
+.. .++.++..+ .++ ..++..|+.++.+++..... .+. ..++.++..+. .+ +.+.
T Consensus 324 ~~~~~---~l~~L~~lL----~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~----~~-----~~~v 387 (528)
T 4b8j_A 324 IIDHQ---ALPCLLSLL----TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ----TA-----EFDI 387 (528)
T ss_dssp HHTTT---HHHHHHHHH----HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH----HS-----CHHH
T ss_pred HHHhh---hHHHHHHHH----cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh----cC-----CHHH
Confidence 111 344444444 333 34899999999999864332 222 34455554443 21 4677
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC--------Ccc
Q 005232 597 SLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN--------HPE 668 (707)
Q Consensus 597 ~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~--------~~~ 668 (707)
+...+.+++.+.....++.. .++.. ...+..|..++.... ..-....++.|..+++... ...
T Consensus 388 ~~~a~~aL~nl~~~~~~~~~-~~l~~--~~~i~~L~~lL~~~d-------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 457 (528)
T 4b8j_A 388 KKEAAWAISNATSGGSHDQI-KYLVS--EGCIKPLCDLLICPD-------IRIVTVCLEGLENILKVGETDKTLAAGDVN 457 (528)
T ss_dssp HHHHHHHHHHHHHHSCHHHH-HHHHH--TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHcCCCHHHH-HHHHH--CCCHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 88999999998887543332 22211 244555556555432 1223345666666665431 122
Q ss_pred cHHHHHHH--HhHHHHHHHHhhcCchhHHHHHHHHHhh
Q 005232 669 AVADAIQR--LWPIFKAIFDIRAWDMRTMESLCRACKY 704 (707)
Q Consensus 669 p~~~~~~~--~~p~l~~i~~~~~~~~~v~e~~c~~~~~ 704 (707)
+....+.+ .+..+..+.. ..+.+|.+.+..++..
T Consensus 458 ~~~~~i~~~~~~~~l~~L~~--~~~~~v~~~a~~il~~ 493 (528)
T 4b8j_A 458 VFSQMIDEAEGLEKIENLQS--HDNNEIYEKAVKILEA 493 (528)
T ss_dssp HHHHHHHHTTHHHHHHHGGG--CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 34444443 2455555432 2456777777776654
No 27
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.54 E-value=0.043 Score=65.26 Aligned_cols=224 Identities=12% Similarity=0.083 Sum_probs=116.4
Q ss_pred hhhHHHHHHhhcChH--HHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccc-cccH----HHHHhhcC-
Q 005232 429 VADVLIDAASVLGGD--ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVM----PQVMALLP- 500 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~--~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-~~~l----~~l~~~l~- 500 (707)
++.++.+++.-.+.. .+++.+.+.+.+.+.. + ..+-...+..+-+++.++..++.++ .+++ +.+++.+.
T Consensus 563 A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~-~--~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~ 639 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYADPLLNACHASLNT-G--RMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQA 639 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS-T--TSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHcC-C--CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444421 1233333333333321 1 1334667888888888887765222 2333 33333222
Q ss_pred --CCCC-hHHHHHHHHHHHHhhHHHHhh---C----------CC-CchhHHHHHHHHHhcc---CCChHHHHHHHHHHHH
Q 005232 501 --KLPQ-QPQLLQTVCLTIGAYSKWFDA---A----------SS-DPSILASVLSILTSGM---STSEDTAAAAALAFRH 560 (707)
Q Consensus 501 --~l~~-~~~l~~t~~~~ig~~~~~l~~---~----------p~-~~~~l~~~l~~l~~~l---~~~~~v~~~Aa~al~~ 560 (707)
+.+. .+.-+...+..++.++..+.. . ++ ...+.+.+++.+...+ .+...+...|+.++.+
T Consensus 640 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~ 719 (971)
T 2x1g_F 640 ICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKH 719 (971)
T ss_dssp HHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2221 222344444455555444331 1 11 1234555555544433 2222489999999999
Q ss_pred HHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChH-HHHHHHHHhhhhhHHHHHHHHhcCC
Q 005232 561 ICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV-DAKKALEMLCLPVVTPLQEIINQGP 639 (707)
Q Consensus 561 l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~-~~~~~l~~l~~p~~~~L~~~~~~~~ 639 (707)
++...++.+.||++.+++.+...+++. .....+.-++.++..+..+ ...+.+..++.+++...-+.+.+..
T Consensus 720 ~~~~~~~~~~p~l~~~~~~l~~~~~~~--------~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 791 (971)
T 2x1g_F 720 AITNLRSSFQPMLQDLCLFIVASFQTR--------CCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTP 791 (971)
T ss_dssp HHHHHHC--CTHHHHHHHHHHHHCC----------CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHhhhhhccccHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999887766531 1134778888888887764 4556777777777777666665431
Q ss_pred CcccccCchhhhHHHHHHHHHhhh
Q 005232 640 EILQKKHPRDLTVHIDRFAYIFRY 663 (707)
Q Consensus 640 ~~~~~~~~~~~~~~i~~l~~~~~~ 663 (707)
....++.+......++.++.+++.
T Consensus 792 ~~~~~~~pd~~~~~f~ll~~~l~~ 815 (971)
T 2x1g_F 792 EQNFSNISDTMETFFGCLTQIIKK 815 (971)
T ss_dssp TTHHHHTHHHHHHHHHHHHHHHHS
T ss_pred ccCCccCchHHHHHHHHHHHHHHh
Confidence 000011122223455666655553
No 28
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0024 Score=62.66 Aligned_cols=165 Identities=14% Similarity=0.147 Sum_probs=120.7
Q ss_pred CCcchhhHHHHHHHHhhccCC-cccc-ccHHHHHhhcC-CCC-ChHHHHHHHHHHHHhhHHHHhhCCCCc-hhHHHHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVS-VVEA-EVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLSI 539 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~-~~~~-~~l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~-~~l~~~l~~ 539 (707)
.+-.-+++++.+++.+++.+. +.-. .+...++..+. .+. ..+.|+..+...+-.+.+... |... .+++.+++.
T Consensus 73 ~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~--~~~~~~~l~~ll~~ 150 (249)
T 2qk1_A 73 ANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD--PLASSGRNEDMLKD 150 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC--TTCTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc--ccccCCcHHHHHHH
Confidence 456667999999999999887 5544 45544444332 232 358888888888877766542 2111 147889998
Q ss_pred HHhccCCCh-HHHHHHHHHHHHHHHHhh---hhhcCCH-HHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChH
Q 005232 540 LTSGMSTSE-DTAAAAALAFRHICDDCR---KKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (707)
Q Consensus 540 l~~~l~~~~-~v~~~Aa~al~~l~~~c~---~~l~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 614 (707)
++.++.++. .++..+...+.+++.... ..+.+|+ +.++..+...+.. -+.+.|...+++++.+...++.+
T Consensus 151 l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D-----~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 151 ILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND-----TQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhCHH
Confidence 888887753 488899999999998877 4577888 8899888888764 35788999999999999999877
Q ss_pred HHHHHHHHhhhhhHHHHHHHHh
Q 005232 615 DAKKALEMLCLPVVTPLQEIIN 636 (707)
Q Consensus 615 ~~~~~l~~l~~p~~~~L~~~~~ 636 (707)
...+++..+-+.-...++.++.
T Consensus 226 ~~~p~l~~Ld~~k~~ki~~~~~ 247 (249)
T 2qk1_A 226 TFVKTLEHLDNLKRKKIEETVK 247 (249)
T ss_dssp GGHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHh
Confidence 7888888876655555555543
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.42 E-value=0.044 Score=58.43 Aligned_cols=220 Identities=12% Similarity=0.104 Sum_probs=121.1
Q ss_pred CCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l-~~~l~ 538 (707)
.+..-++.++.+++.++....+. ....++.+++.+.. .++.++..++.++|.++.--....+ ..+ ..+++
T Consensus 204 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~ 279 (450)
T 2jdq_A 204 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH--NDYKVVSPALRAVGNIVTGDDIQTQ--VILNCSALQ 279 (450)
T ss_dssp CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC--CchhHHHHHHHHHHHHhhCChHHHH--HHHHCccHH
Confidence 45667788899999998764321 13467777777653 3689999999999988642110000 001 13455
Q ss_pred HHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCH-HHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHH
Q 005232 539 ILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (707)
Q Consensus 539 ~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 616 (707)
.+.+.+.++. .++..|+.++.+++..+.......+ ..++..+..++..+ +.+.+.....+++.+.....++..
T Consensus 280 ~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~ 354 (450)
T 2jdq_A 280 SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-----EFRTRKEAAWAITNATSGGSAEQI 354 (450)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHcCCCHHHH
Confidence 5555565543 4899999999999864433221111 12333333333332 366788889999998876544433
Q ss_pred HHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC--------CcccHHHHHH--HHhHHHHHHHH
Q 005232 617 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN--------HPEAVADAIQ--RLWPIFKAIFD 686 (707)
Q Consensus 617 ~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~--------~~~p~~~~~~--~~~p~l~~i~~ 686 (707)
...+. ..++..|-+++.... ..-....+..|..+..... ...|....+. ..++.+..+..
T Consensus 355 ~~l~~---~~~i~~L~~ll~~~~-------~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~ 424 (450)
T 2jdq_A 355 KYLVE---LGCIKPLCDLLTVMD-------SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQS 424 (450)
T ss_dssp HHHHH---HTCHHHHHHGGGSSC-------HHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHC
T ss_pred HHHHH---CCCHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHc
Confidence 33322 234444555555321 1112233455555544321 0123333332 23566666543
Q ss_pred hhcCchhHHHHHHHHHhhh
Q 005232 687 IRAWDMRTMESLCRACKYA 705 (707)
Q Consensus 687 ~~~~~~~v~e~~c~~~~~~ 705 (707)
. .+.+|.+.+..+++..
T Consensus 425 ~--~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 425 H--ENQEIYQKAFDLIEHY 441 (450)
T ss_dssp H--HHHHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHHH
Confidence 3 3567777777777654
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.37 E-value=0.044 Score=60.15 Aligned_cols=216 Identities=13% Similarity=0.101 Sum_probs=124.0
Q ss_pred CCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc-hhH-HHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SIL-ASVL 537 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~-~~l-~~~l 537 (707)
.+..-++.++.+++.++...+.. +...++.+++.+.. .++.++..++.++|.++.- ++... .++ ..++
T Consensus 269 ~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l 343 (530)
T 1wa5_B 269 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--ESTLVQTPALRAVGNIVTG---NDLQTQVVINAGVL 343 (530)
T ss_dssp CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC--CChhhHHHHHHHHHHHHcC---CHHHHHHHHHcchH
Confidence 45667788999999998764321 12456777777653 3689999999999988631 11100 011 1344
Q ss_pred HHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhh---c--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcC
Q 005232 538 SILTSGMSTSE-DTAAAAALAFRHICDDCRKKL---C--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (707)
Q Consensus 538 ~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l---~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (707)
+.+...+.++. .++..|+.++.+++..+.... . ..++.++..+. . -+.+.+.....+++.++...
T Consensus 344 ~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~-----~~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE----V-----AEYKTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH----H-----SCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh----c-----CCHHHHHHHHHHHHHHHhcC
Confidence 55555555543 489999999999986443322 1 34555555443 2 13667889999999998765
Q ss_pred Ch--HHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC--------CcccHHHHHHH--HhH
Q 005232 612 PQ--VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN--------HPEAVADAIQR--LWP 679 (707)
Q Consensus 612 p~--~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~--------~~~p~~~~~~~--~~p 679 (707)
++ +... ++.. ...+..|..++.... ..-....+..|..+++... ...+....+.+ .++
T Consensus 415 ~~~~~~~~-~l~~--~~~l~~L~~ll~~~~-------~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 484 (530)
T 1wa5_B 415 LQRPDIIR-YLVS--QGCIKPLCDLLEIAD-------NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGME 484 (530)
T ss_dssp TTCTHHHH-HHHH--TTCHHHHHHHTTTCC-------HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHH
T ss_pred CCcHHHHH-HHHH--CCCHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHH
Confidence 43 3322 2222 234555555555321 1122234566666655431 11344444332 356
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHhhhh
Q 005232 680 IFKAIFDIRAWDMRTMESLCRACKYAV 706 (707)
Q Consensus 680 ~l~~i~~~~~~~~~v~e~~c~~~~~~~ 706 (707)
.|..+... .+.+|.+++..++...+
T Consensus 485 ~L~~L~~~--~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 485 KIFNCQQN--ENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHGGGGC--SCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHC
Confidence 66665432 45677788877776543
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.15 E-value=0.1 Score=57.11 Aligned_cols=330 Identities=13% Similarity=0.135 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC---ccHHHHHHHHHHHHhhhccCCCCCCCCcHhHH-H-H
Q 005232 193 ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE---ILSEASVNVISELIHYSAAGSSGGATVNMPLI-Q-V 267 (707)
Q Consensus 193 ~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~---~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~-~-~ 267 (707)
+++..++.++..-+.....-+...+....+++.++..|.++ ++...|+.+|..+..... +....+ . .
T Consensus 102 ~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~--------~~~~~~~~~g 173 (530)
T 1wa5_B 102 QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS--------AQTKVVVDAD 173 (530)
T ss_dssp HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH--------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH--------HHHHHHHHCC
Confidence 56777888877665431101111223456888899999764 467888999998886321 111111 1 1
Q ss_pred HHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhH---HHHHHHcCCcchHHHHHHHhhhcccCchhhhhhhHHHHHHHH
Q 005232 268 IVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS---YVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQ 344 (707)
Q Consensus 268 l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~---~~~~i~~~~~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~ 344 (707)
.++.++.+ +. +.+.+.....+..+..++.. +...+... ..++.++.+...++.++...++.....+.
T Consensus 174 ~i~~Lv~l---L~--~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 174 AVPLFIQL---LY--TGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-----NAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp CHHHHHHH---HH--HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHH---Hc--CCCHHHHHHHHHHHHHHhCCCccchHHHHHc-----CcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 12222222 11 23455555556666666532 22222221 24566666666677777777666655554
Q ss_pred HHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhhh
Q 005232 345 VILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESV 424 (707)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~~ 424 (707)
..- ++.. .. .....++..++..+.-+ + ...|..
T Consensus 244 ~~~-----------~~~~------~~----~~~~~~l~~L~~lL~~~------d-------~~v~~~------------- 276 (530)
T 1wa5_B 244 RGK-----------KPQP------DW----SVVSQALPTLAKLIYSM------D-------TETLVD------------- 276 (530)
T ss_dssp CCS-----------SSCC------CH----HHHGGGHHHHHHHTTCC------C-------HHHHHH-------------
T ss_pred CCC-----------CCCC------cH----HHHHhHHHHHHHHHcCC------C-------HHHHHH-------------
Confidence 310 0000 00 01122333333322211 1 123433
Q ss_pred hhhhhhhHHHHHHhhcChHHHHHH-----HHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCcc-----ccccHHH
Q 005232 425 MLIAVADVLIDAASVLGGDATLKI-----LYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQ 494 (707)
Q Consensus 425 ~~~~~~d~l~~~~~~l~~~~~l~~-----l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~ 494 (707)
+..++.+++..- +..... +...|.+.+. ..+|.-.+.++.+++.++..-... +...++.
T Consensus 277 ----a~~~L~~L~~~~--~~~~~~~~~~~~v~~Lv~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 345 (530)
T 1wa5_B 277 ----ACWAISYLSDGP--QEAIQAVIDVRIPKRLVELLS-----HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPA 345 (530)
T ss_dssp ----HHHHHHHHHSSC--HHHHHHHHHTTCHHHHHHGGG-----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred ----HHHHHHHHhCCC--HHHHHHHHhcCcHHHHHHHHC-----CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHH
Confidence 555565544321 111111 1122333221 356888899999999998653321 1235566
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHhhHHH----Hhh--CCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhh-
Q 005232 495 VMALLPKLPQQPQLLQTVCLTIGAYSKW----FDA--ASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRK- 567 (707)
Q Consensus 495 l~~~l~~l~~~~~l~~t~~~~ig~~~~~----l~~--~p~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~- 567 (707)
+++.+.. .++.++..++++|+.++.. ... .. ..++.++..+-. .++. ++..|+.+|.+++.....
T Consensus 346 L~~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~--~~~~-v~~~a~~aL~~l~~~~~~~ 417 (530)
T 1wa5_B 346 LRLLLSS--PKENIKKEACWTISNITAGNTEQIQAVIDA---NLIPPLVKLLEV--AEYK-TKKEACWAISNASSGGLQR 417 (530)
T ss_dssp HHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT---TCHHHHHHHHHH--SCHH-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHC---CCHHHHHHHHhc--CCHH-HHHHHHHHHHHHHhcCCCc
Confidence 6666543 2689999999999998742 110 01 145555555532 2334 999999999999986532
Q ss_pred -hhcCCHH--HHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcC
Q 005232 568 -KLCGYLD--GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (707)
Q Consensus 568 -~l~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (707)
....++- .++..+..++.. -+.+.+...+.+++.++...
T Consensus 418 ~~~~~~l~~~~~l~~L~~ll~~-----~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 418 PDIIRYLVSQGCIKPLCDLLEI-----ADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp THHHHHHHHTTCHHHHHHHTTT-----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhh
Confidence 1111111 133444444443 24667778888888877654
No 32
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.89 E-value=0.39 Score=53.32 Aligned_cols=157 Identities=13% Similarity=0.170 Sum_probs=92.6
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHH
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQL 508 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l 508 (707)
..+++..+ ...+ -++.+...+.+++. ..++.-+..++.+++.++...++....+++.+++.+..- ...+
T Consensus 338 al~~L~~l---~~~~-nv~~iv~~L~~~l~-----~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~--~~~v 406 (591)
T 2vgl_B 338 KLDIMIRL---ASQA-NIAQVLAELKEYAT-----EVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK--VNYV 406 (591)
T ss_dssp HHHHHHHT---CCSS-THHHHHHHHHHHTT-----SSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC--CHHH
T ss_pred HHHHHHHH---CChh-hHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHccc--chHH
Confidence 55565443 3322 23334455555431 356788888999999999987655555677777766532 3556
Q ss_pred HHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccC---CChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh
Q 005232 509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS---TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (707)
Q Consensus 509 ~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~---~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~ 585 (707)
+..++..++. -+..+|+ ....++..+...+. .|. +...+++.+..++... +..+.++..+.+.+.
T Consensus 407 ~~e~i~~l~~---ii~~~p~---~~~~~v~~L~~~l~~~~~~~-~~~~~~wilGey~~~~-----~~~~~~l~~l~~~~~ 474 (591)
T 2vgl_B 407 VQEAIVVIRD---IFRKYPN---KYESIIATLCENLDSLDEPD-ARAAMIWIVGEYAERI-----DNADELLESFLEGFH 474 (591)
T ss_dssp HHHHHHHHHH---HHHHSCS---SCCTTHHHHHHTTTTCCSHH-HHHHHHHHHHTTCTTC-----TTHHHHHHHHSTTCS
T ss_pred HHHHHHHHHH---HHHHCcc---hHHHHHHHHHHHHHhccCHH-HHHHHHHHHHcccccc-----cCHHHHHHHHHHhhc
Confidence 6666665554 4456675 23344444555453 334 6666666666654332 223444443332221
Q ss_pred ccCCCCCChhhHHHHHHHHHHHHhcCCh
Q 005232 586 GEGSLKVSAEDSLHLVEALSMVITELPQ 613 (707)
Q Consensus 586 ~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (707)
.-+...+..++.+++.+....|.
T Consensus 475 -----~~~~~vr~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 475 -----DESTQVQLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp -----SSCHHHHHHHHHHHHHHHTTCCS
T ss_pred -----cCCHHHHHHHHHHHHHHHhcCch
Confidence 12467899999999999988875
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.85 E-value=0.2 Score=53.25 Aligned_cols=333 Identities=15% Similarity=0.138 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccccc-hhHHHHHhcCCCC---ccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHH-H
Q 005232 193 ELKEQVLEAFASWLRLKHRIPGSVLASH-PLVLTALSSLHSE---ILSEASVNVISELIHYSAAGSSGGATVNMPLIQ-V 267 (707)
Q Consensus 193 ~~~~~~l~~l~sWi~~~~~~~~~~~~~~-~ll~~~~~~L~~~---~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~-~ 267 (707)
+++..++.++..-+.....-+....... .+++.+.+.|.++ +....|+.++..+...... ....++. .
T Consensus 35 ~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~ 107 (450)
T 2jdq_A 35 EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-------QTRIVIQAG 107 (450)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH-------HHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-------HHHHHHhCC
Confidence 5677888888776542111111111223 6788888888755 4677889999988863210 0111111 1
Q ss_pred HHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhH---HHHHHHcCCcchHHHHHHHhhhccc-CchhhhhhhHHHHHHH
Q 005232 268 IVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS---YVELIATGSDESMLIVHALLEVASH-PEYDIASMTFNFWHSL 343 (707)
Q Consensus 268 l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~---~~~~i~~~~~~~~~~~~~ll~~~~~-~~~~v~~~~l~FW~~l 343 (707)
.++.++. .+. +.+.+.....+..+..++.. ....+.+. ..++.++.+... ++.++...++..+..+
T Consensus 108 ~i~~L~~---lL~--~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 108 AVPIFIE---LLS--SEFEDVQEQAVWALGNIAGDSTMCRDYVLDC-----NILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHH---HTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHH---HHc--CCCHHHHHHHHHHHHHHccCCHHHHHHHHHC-----CCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 2222221 221 23555555556666666542 22222221 235566666664 5678888877776655
Q ss_pred HHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhh
Q 005232 344 QVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTES 423 (707)
Q Consensus 344 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~ 423 (707)
...-. ... ...... .+++.++..+.-+ + + ..|..
T Consensus 178 ~~~~~---------~~~--------~~~~~~----~~l~~L~~~l~~~------~-~------~v~~~------------ 211 (450)
T 2jdq_A 178 CRGKS---------PPP--------EFAKVS----PCLNVLSWLLFVS------D-T------DVLAD------------ 211 (450)
T ss_dssp HCCSS---------SCC--------CGGGTG----GGHHHHHHHTTCC------C-H------HHHHH------------
T ss_pred hCCCC---------CCC--------CHHHHH----HHHHHHHHHHccC------C-H------HHHHH------------
Confidence 53110 000 001111 2233333322211 1 1 22333
Q ss_pred hhhhhhhhHHHHHHhhcChHHHHHH-----HHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccc-----cccHH
Q 005232 424 VMLIAVADVLIDAASVLGGDATLKI-----LYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-----AEVMP 493 (707)
Q Consensus 424 ~~~~~~~d~l~~~~~~l~~~~~l~~-----l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-----~~~l~ 493 (707)
+..++.+++.... + .... +...+.+.+ . ..+|.-++.++.+++.++...+... ...++
T Consensus 212 -----a~~~L~~l~~~~~-~-~~~~~~~~~~i~~L~~ll----~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 279 (450)
T 2jdq_A 212 -----ACWALSYLSDGPN-D-KIQAVIDAGVCRRLVELL----M-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQ 279 (450)
T ss_dssp -----HHHHHHHHTSSSH-H-HHHHHHHTTTHHHHHHHT----T-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHH
T ss_pred -----HHHHHHHHHCCCc-H-HHHHHHHcCcHHHHHHHH----C-CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHH
Confidence 5555555443221 1 1110 112222222 1 3678889999999999987643221 23566
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCC-C--chhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhh-hhh
Q 005232 494 QVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASS-D--PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCR-KKL 569 (707)
Q Consensus 494 ~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~-~--~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~-~~l 569 (707)
.+++.+.. .++.+|..++.++|.++..-..+-+ . ...++.++..+.. .++. ++..|+.++.+++.... ...
T Consensus 280 ~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~~-v~~~a~~~L~~l~~~~~~~~~ 354 (450)
T 2jdq_A 280 SLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT--AEFR-TRKEAAWAITNATSGGSAEQI 354 (450)
T ss_dssp HHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH--SCHH-HHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCHH-HHHHHHHHHHHHHcCCCHHHH
Confidence 66666554 3789999999999998741110000 0 0145555555433 2334 99999999999997632 222
Q ss_pred cCCH-HHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 570 CGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 570 ~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
...+ ..++..+..++..+ +.+.+...+.+++.++..
T Consensus 355 ~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 355 KYLVELGCIKPLCDLLTVM-----DSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHTCHHHHHHGGGSS-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHh
Confidence 1111 12444455555432 456778888888877765
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.76 E-value=0.056 Score=52.39 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=112.3
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCC-chhHHHHHHHHHhccC-CCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Q 005232 504 QQPQLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILTSGMS-TSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVY 580 (707)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~p~~-~~~l~~~l~~l~~~l~-~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~ 580 (707)
.....|..++..++.+.+- +|.. ...+..+++.+...+. +++ .++..|+.++..++...+..+.+|++.++..+
T Consensus 27 ~~w~~R~~a~~~L~~l~~~---~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~l 103 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTD---HPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSL 103 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHH---CSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc---CCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3689999999999887653 2221 0134677777777774 543 48899999999999999988889999999988
Q ss_pred HHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHH
Q 005232 581 RTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 660 (707)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 660 (707)
...+.. -+...|....+++..++...+. .. ++..+...++..+ +.--...+..++.+
T Consensus 104 l~~l~d-----~~~~vr~~a~~aL~~~~~~~~~-------~~----ll~~l~~~l~~~~-------~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 104 LEKFKE-----KKPNVVTALREAIDAIYASTSL-------EA----QQESIVESLSNKN-------PSVKSETALFIARA 160 (242)
T ss_dssp HHGGGC-----CCHHHHHHHHHHHHHHHTTSCH-------HH----HHHHHHHHTTCSC-------HHHHHHHHHHHHHH
T ss_pred HHHHcC-----CCHHHHHHHHHHHHHHHHcCCH-------HH----HHHHHHHHHcCCC-------hHHHHHHHHHHHHH
Confidence 887764 2366788999999988887652 22 2333334444221 12222456666766
Q ss_pred hhhcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHh
Q 005232 661 FRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACK 703 (707)
Q Consensus 661 ~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~ 703 (707)
+...++.......+..+.|.+...++. .+.+|=+.+..++.
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D--~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNE--PDPTVRDSSAEALG 201 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHH
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHH
Confidence 554432113456677888888888843 33444444444443
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.65 E-value=0.49 Score=52.84 Aligned_cols=59 Identities=15% Similarity=0.014 Sum_probs=41.6
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhcChhH----HHHHHHHhhcCCCChhHHHHHHHHHHhhhhc
Q 005232 9 EALNALYHHPDDAVRMQADRWLQDFQHTIDA----WQVADNLLHDATSNLETLIFCSQTLRSKVQR 70 (707)
Q Consensus 9 ~al~~ly~~~d~~~r~~A~~~L~~~q~s~~a----w~~~~~LL~~~~~~~~v~~faa~~L~~ki~~ 70 (707)
+.+..-..++|+..|..|-..|..+.. ++. -.....+|. +.++.||--|+..+.+..+.
T Consensus 110 n~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~~~~l~~~l~~~L~--~~~~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 110 NCIKNDLNHSTQFVQGLALCTLGCMGS-SEMCRDLAGEVEKLLK--TSNSYLRKKAALCAVHVIRK 172 (618)
T ss_dssp HHHHHHHSCSSSHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH--SCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 334433467888999999999999874 443 233445554 35789999999999887664
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.62 E-value=0.33 Score=53.00 Aligned_cols=330 Identities=14% Similarity=0.132 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC---ccHHHHHHHHHHHHhhhccCCCCCCCCcHhH-HH-H
Q 005232 193 ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE---ILSEASVNVISELIHYSAAGSSGGATVNMPL-IQ-V 267 (707)
Q Consensus 193 ~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~---~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~-~~-~ 267 (707)
+++..++.++...+.....-+...+.....++.++..|.++ ++...|+.+|..+..... +.... +. .
T Consensus 89 ~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~--------~~~~~~~~~g 160 (528)
T 4b8j_A 89 NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS--------ENTKVVIDHG 160 (528)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH--------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH--------HHHHHHHhCC
Confidence 56777888887766532101111233456788888888753 567889999999886422 11111 11 1
Q ss_pred HHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhhH---HHHHHHcCCcchHHHHHHHhhhc-ccCchhhhhhhHHHHHHH
Q 005232 268 IVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDS---YVELIATGSDESMLIVHALLEVA-SHPEYDIASMTFNFWHSL 343 (707)
Q Consensus 268 l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e~---~~~~i~~~~~~~~~~~~~ll~~~-~~~~~~v~~~~l~FW~~l 343 (707)
.++.++. .+. +.+.+.....+..+..++.. ....+... ..+..++.+. .+++..+...+......+
T Consensus 161 ~i~~L~~---lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~-----g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 161 AVPIFVK---LLG--SSSDDVREQAVWALGNVAGDSPKCRDLVLAN-----GALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHHH---HTT--CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHT-----TCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHH---Hhc--CCCHHHHHHHHHHHHHHhCCChhhHHHHHHC-----CcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2222222 221 23445454555666665532 11222221 2355566666 455666666666554444
Q ss_pred HHHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCCchhhh
Q 005232 344 QVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTES 423 (707)
Q Consensus 344 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~~~~~~~ 423 (707)
...- +.+ ..... ..++..++..+.-+ + . ..|..
T Consensus 231 ~~~~----------~~~--------~~~~~----~~~l~~L~~lL~~~-~------~------~v~~~------------ 263 (528)
T 4b8j_A 231 CRGK----------PQP--------SFEQT----RPALPALARLIHSN-D------E------EVLTD------------ 263 (528)
T ss_dssp HCSS----------SCC--------CHHHH----TTHHHHHHHHTTCC-C------H------HHHHH------------
T ss_pred HcCC----------CCC--------cHHHH----HHHHHHHHHHHCCC-C------H------HHHHH------------
Confidence 4210 000 00111 22333333332211 1 1 12333
Q ss_pred hhhhhhhhHHHHHHhhcChHHHHHHH-----HHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCcc-----ccccHH
Q 005232 424 VMLIAVADVLIDAASVLGGDATLKIL-----YIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMP 493 (707)
Q Consensus 424 ~~~~~~~d~l~~~~~~l~~~~~l~~l-----~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~ 493 (707)
+..++.+++.. .+...+.+ ...|.+.+ . ..++.-.+.++.+++.++...... +...++
T Consensus 264 -----a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL----~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~ 331 (528)
T 4b8j_A 264 -----ACWALSYLSDG--TNDKIQAVIEAGVCPRLVELL----L-HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALP 331 (528)
T ss_dssp -----HHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHT----T-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHH
T ss_pred -----HHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHH----c-CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHH
Confidence 44455444321 12111111 12222322 1 345777899999999998754322 123456
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCC------chhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhh
Q 005232 494 QVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD------PSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRK 567 (707)
Q Consensus 494 ~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~------~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~ 567 (707)
.+++.+.. +.++.++..++++++.++.. +++. ...++.++..+..+ ++. ++..|+.+|.+++.....
T Consensus 332 ~L~~lL~~-~~~~~v~~~A~~~L~nl~~~---~~~~~~~~~~~~~i~~L~~lL~~~--~~~-v~~~a~~aL~nl~~~~~~ 404 (528)
T 4b8j_A 332 CLLSLLTQ-NLKKSIKKEACWTISNITAG---NKDQIQAVINAGIIGPLVNLLQTA--EFD-IKKEAAWAISNATSGGSH 404 (528)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHHHTS---CHHHHHHHHHTTCHHHHHHHHHHS--CHH-HHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHHHCC---CHHHHHHHHHCCCHHHHHHHHhcC--CHH-HHHHHHHHHHHHHcCCCH
Confidence 66666543 22789999999999998741 1110 01455566555443 344 999999999999987322
Q ss_pred hhcCCH--HHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcC
Q 005232 568 KLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (707)
Q Consensus 568 ~l~~~~--~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (707)
....++ ...+..+..++.. -+.+.+..++.+++.++...
T Consensus 405 ~~~~~l~~~~~i~~L~~lL~~-----~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 405 DQIKYLVSEGCIKPLCDLLIC-----PDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHTTCHHHHHHGGGC-----SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHH
Confidence 211111 1234444445543 24567888888888887764
No 37
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.53 E-value=0.93 Score=53.53 Aligned_cols=257 Identities=9% Similarity=0.071 Sum_probs=130.9
Q ss_pred hhhHHHHHHhhcChH--HHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCC-ccccccHHHHHhhcC-----
Q 005232 429 VADVLIDAASVLGGD--ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVS-VVEAEVMPQVMALLP----- 500 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~--~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~-~~~~~~l~~l~~~l~----- 500 (707)
++.++..++.-.+.. .+++.+.+.+.+.+... ..+-...+..+-+++.++...+ +...+++..+++.+.
T Consensus 547 A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~---~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~ 623 (963)
T 2x19_B 547 SVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEK 623 (963)
T ss_dssp HHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544433311 13344444444443211 1234667788888888887765 223345555554321
Q ss_pred --CCCChHH---HHHHHHHHHHhhHHHHhhC-------------------CC-CchhHHHHHHHHHhcc----CCChHHH
Q 005232 501 --KLPQQPQ---LLQTVCLTIGAYSKWFDAA-------------------SS-DPSILASVLSILTSGM----STSEDTA 551 (707)
Q Consensus 501 --~l~~~~~---l~~t~~~~ig~~~~~l~~~-------------------p~-~~~~l~~~l~~l~~~l----~~~~~v~ 551 (707)
+-+.++. .+...+.+++.....+... ++ ...+...+++.+...+ +++. +.
T Consensus 624 ~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-v~ 702 (963)
T 2x19_B 624 LAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ-VV 702 (963)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchH-HH
Confidence 1122333 3334555565555544321 11 0124445555443332 3344 88
Q ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHh--cCChHHHHHHHHHhhhhhHH
Q 005232 552 AAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT--ELPQVDAKKALEMLCLPVVT 629 (707)
Q Consensus 552 ~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~--~~p~~~~~~~l~~l~~p~~~ 629 (707)
..++.++++++..+++.+.|++++++..+.....+. ....-..+ ++.++. +..+ ...+.+..++..+++
T Consensus 703 e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-----~~~~~l~l---~~~li~~f~~~~-~~~~~~~~~l~~~~~ 773 (963)
T 2x19_B 703 EAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI-----PQASALDL---TRQLVHIFAHEP-AHFPPIEALFLLVTS 773 (963)
T ss_dssp HHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS-----CCHHHHHH---HHHHHHHHTTCT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC-----CccHHHHH---HHHHHHHhCCCc-chHHHHHHHHHHHHH
Confidence 899999999999888888999999988776655431 12234444 444444 3321 122445555555555
Q ss_pred HHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHH--HH-HHHHhHHHHHHHHhhcCchhHHHHHHHHHhhhh
Q 005232 630 PLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVA--DA-IQRLWPIFKAIFDIRAWDMRTMESLCRACKYAV 706 (707)
Q Consensus 630 ~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~--~~-~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~~ 706 (707)
..-.+++.... ..+......++.++.++++.. ..++ +. ++.+++.+...+. ..+..++..+|.++...+
T Consensus 774 ~~l~~~~~~~~----~~pd~~~~~f~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~~l~--~~~~~~~~~~l~~l~~l~ 845 (963)
T 2x19_B 774 VTLTLFQQGPR----DHPDIVDSFMQLLAQALKRKP--DLFLCERLDVKAVFQCAVLALK--FPEAPTVKASCGFFTELL 845 (963)
T ss_dssp HHHHHHHHCTT----TCHHHHHHHHHHHHHHHHHCG--GGGGCTTSCHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHhhCcc----cCchHHHHHHHHHHHHHHhCc--HHHcCCcccHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHH
Confidence 54444442211 012334456777787777642 1111 11 3334444333333 245667777777766543
No 38
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.36 E-value=0.12 Score=61.06 Aligned_cols=83 Identities=10% Similarity=0.143 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhh
Q 005232 548 EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPV 627 (707)
Q Consensus 548 ~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~ 627 (707)
..++.+++.+|+++.......+.|+++.++..+... .+..+....+.-+|.++.....+ ..+.+..++.|+
T Consensus 715 ~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~--------~~~~e~~~fL~l~~qli~~f~~~-~~~~l~~ll~~l 785 (980)
T 3ibv_A 715 EDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS--------IDMNELVDVLSFISQLIHIYKDN-MMEITNRMLPTL 785 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHH--------CCTTTHHHHHHHHHHHHHHTTTT-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 349999999999999988899999999999887743 23445667777888888888766 788999999999
Q ss_pred HHHHHHHHhcCC
Q 005232 628 VTPLQEIINQGP 639 (707)
Q Consensus 628 ~~~L~~~~~~~~ 639 (707)
++++-+.++++.
T Consensus 786 ~~~if~~l~~~~ 797 (980)
T 3ibv_A 786 LMRIFSSLSAAP 797 (980)
T ss_dssp HHHHHHHTTC--
T ss_pred HHHHHHHhcCCC
Confidence 999999988754
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.32 E-value=1.9 Score=48.08 Aligned_cols=126 Identities=10% Similarity=0.031 Sum_probs=69.8
Q ss_pred hhhHHHHHHhhcC--hHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChH
Q 005232 429 VADVLIDAASVLG--GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQP 506 (707)
Q Consensus 429 ~~d~l~~~~~~l~--~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~ 506 (707)
+...+..|+.... .+.++..+.+.+..... .-.-|+ ...+..+....+.-....+..+++.+..-..+.
T Consensus 424 ~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~--------~v~~ev-~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~ 494 (621)
T 2vgl_A 424 IVLKVAILAEKYAVDYTWYVDTILNLIRIAGD--------YVSEEV-WYRVIQIVINRDDVQGYAAKTVFEALQAPACHE 494 (621)
T ss_dssp HHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGG--------GSCSHH-HHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc--------cchHHH-HHHHHHHHhCChhHHHHHHHHHHHHHcCccchH
Confidence 4444444444332 25577777666654311 111222 333333333333222223455666655422356
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccC-CChHHHHHHHHHHHHHHHHh
Q 005232 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-TSEDTAAAAALAFRHICDDC 565 (707)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~-~~~~v~~~Aa~al~~l~~~c 565 (707)
.+.+.++|++|.|++.+...+.. ....++..+...+. .+..++.++-.|+.++...+
T Consensus 495 ~li~~~~wilGEy~~~~~~~~~~--~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~ 552 (621)
T 2vgl_A 495 NLVKVGGYILGEFGNLIAGDPRS--SPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF 552 (621)
T ss_dssp HHHHHHHHHHHHHTHHHHSSTTS--CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcchHHHhcccCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC
Confidence 77788889999999999876541 11245555655443 33348888888999987655
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.17 E-value=2.6 Score=48.34 Aligned_cols=257 Identities=12% Similarity=0.063 Sum_probs=131.1
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHhc----------ChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhH
Q 005232 11 LNALYHHPDDAVRMQADRWLQDFQH----------TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAV 80 (707)
Q Consensus 11 l~~ly~~~d~~~r~~A~~~L~~~q~----------s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~ 80 (707)
|..+..+.|+..|..|-..|..+-+ .+++......+|.+ +.+.++|..|+.+|++. ... ++...
T Consensus 155 Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~L-s~~----~~~~~ 228 (780)
T 2z6g_A 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHNL-SHH----REGLL 228 (780)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH-HTS----HHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC-CCCHHHHHHHHHHHHHH-hCC----chhHH
Confidence 3334457799999999999988876 34566666667764 45788999999999984 332 12112
Q ss_pred HHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccccccC---CccchHHHHHhcCCCC-CchhHHHHHhccchhhc
Q 005232 81 RGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWG---GGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEV 155 (707)
Q Consensus 81 ~~lr~~Ll~~l~~~~-~~~~~v~~qL~~ala~l~~~~~~~~W~---~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE~ 155 (707)
...+...+..|..+- .+...++..-+.+|..++..... ... +.+.++.+++.+.+.. ......+..|..+...
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~- 306 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG- 306 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-
Confidence 222334455555542 34677888888888888765321 110 0126677777776532 1223344444443211
Q ss_pred ccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC--
Q 005232 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE-- 233 (707)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~-- 233 (707)
..+-|..+.+. ...+.++.++... ........+..++....... -....+.....++.++..+.++
T Consensus 307 -------~~e~~~~i~~~--~~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~l~~Ll~lL~~~~~ 374 (780)
T 2z6g_A 307 -------NQESKLIILAS--GGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQ 374 (780)
T ss_dssp -------CHHHHHHHHTT--THHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTST--THHHHHHHTTHHHHHGGGTTCSCH
T ss_pred -------ChHHHHHHHHc--CCHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCh--HHHHHHHHhchHHHHHHHHcCCch
Confidence 01112111110 1223333433321 01123334444444332210 0001122345677788888754
Q ss_pred ccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhh
Q 005232 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (707)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e 301 (707)
+....|+.+|..+....... ..... +++.++.+ + ...+.+.....+.++..++.
T Consensus 375 ~~~~~a~~~L~~L~~~~~~~-----~~~~~----~i~~Lv~l---L--~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 375 RLVQNCLWTLRNLSDAATKQ-----EGMEG----LLGTLVQL---L--GSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHHHHHHHHHHHHHTTCTTC-----SCCHH----HHHHHHHH---T--TCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhccchhh-----hhhhh----HHHHHHHH---H--cCCCHHHHHHHHHHHHHHHh
Confidence 45677788888877543211 11122 23332221 1 13455555566677776654
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.09 E-value=2 Score=46.72 Aligned_cols=215 Identities=13% Similarity=0.139 Sum_probs=112.0
Q ss_pred CCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCch--hHHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPS--ILASVL 537 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~--~l~~~l 537 (707)
.+-.-.+.++++++.+++.-... +...++.+++.+.. .++.++..++.++|..+.. ++.... .-..++
T Consensus 263 ~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~---~~~~~~~i~~~g~l 337 (529)
T 3tpo_A 263 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTG---TDEQTQKVIDAGAL 337 (529)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGG
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC--CChhHHHHHHHHHHHHHcc---chHHHHHHhhcccH
Confidence 34455677888988888764322 23456777776653 3688999999999887521 111000 001223
Q ss_pred HHHHhccCCCh-HHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCCh
Q 005232 538 SILTSGMSTSE-DTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (707)
Q Consensus 538 ~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~---~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (707)
+.+...+.++. .++..|+.++.++|..... .+... .++..+..++..+ +.+.+.....+++.++..-.+
T Consensus 338 ~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~--g~i~~Lv~lL~~~-----~~~v~~~A~~aL~nl~~~~~~ 410 (529)
T 3tpo_A 338 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH--GLVPFLVGVLSKA-----DFKTQKAAAWAITNYTSGGTV 410 (529)
T ss_dssp GGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhc--CcHHHHHHHhcCC-----CHHHHHHHHHHHHHHHcCCCH
Confidence 34444455543 4899999999999864332 22211 1333333444432 366788888899888876554
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC---CcccHHHHHHH--HhHHHHHHHHhh
Q 005232 614 VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN---HPEAVADAIQR--LWPIFKAIFDIR 688 (707)
Q Consensus 614 ~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~---~~~p~~~~~~~--~~p~l~~i~~~~ 688 (707)
+.... +.. ...+..|-+++...+ .+-....++.|..+++... ..+++...+++ .+..|+.+. .
T Consensus 411 ~~~~~-l~~--~g~i~~L~~LL~~~d-------~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~- 478 (529)
T 3tpo_A 411 EQIVY-LVH--CGIIEPLMNLLSAKD-------TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-R- 478 (529)
T ss_dssp HHHHH-HHH--TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG-G-
T ss_pred HHHHH-HHH--CcCHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH-c-
Confidence 43322 211 123333444444321 2223345566666655432 12222222222 233333332 1
Q ss_pred cCchhHHHHHHHHHh
Q 005232 689 AWDMRTMESLCRACK 703 (707)
Q Consensus 689 ~~~~~v~e~~c~~~~ 703 (707)
-.+.+|.+++.+++.
T Consensus 479 ~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 479 HENESVYKASLNLIE 493 (529)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 135567777666664
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.16 E-value=3.7 Score=44.36 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=75.6
Q ss_pred CCcchhhHHHHHHHHhhccCCccccccH-HHHHhhcCCC--CChHHHHHHHHHHHHhhHHHHhhCCCC---chhHHHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVVEAEVM-PQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLS 538 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l-~~l~~~l~~l--~~~~~l~~t~~~~ig~~~~~l~~~p~~---~~~l~~~l~ 538 (707)
.+..-.+.++.+++.++..-.......+ ...++.|..+ ..++.++..++++++.++..-..+... ...++.++.
T Consensus 286 ~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~ 365 (510)
T 3ul1_B 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365 (510)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHH
Confidence 4566778888888888654222111111 1233333332 236899999999999876421111000 013444444
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHhhhh----hc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 539 ILTSGMSTSEDTAAAAALAFRHICDDCRKK----LC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 539 ~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~----l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
.+..+ ++ +++..|+.|+.+++..+... |. ..++.|+ +++.. -+.+.+..+++++..++..
T Consensus 366 lL~~~--~~-~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~----~LL~~-----~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 366 VLSKA--DF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM----NLLSA-----KDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHSS--CH-HHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHH----HGGGC-----SCHHHHHHHHHHHHHHHHH
T ss_pred HHcCC--CH-HHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH----HHhcC-----CCHHHHHHHHHHHHHHHHH
Confidence 44221 23 49999999999999865432 22 3344444 34443 2466777888888887764
No 43
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.92 E-value=0.039 Score=63.99 Aligned_cols=243 Identities=14% Similarity=0.150 Sum_probs=149.7
Q ss_pred hhhHHHHHHhhcCh-HHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccc-cccHHHHHhhcCCCCChH
Q 005232 429 VADVLIDAASVLGG-DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQP 506 (707)
Q Consensus 429 ~~d~l~~~~~~l~~-~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l~~~~ 506 (707)
+...+..+|...|. ...-.++...+...+...+. ..-.-++|+-.++.++...+++.- ...+|.++..+.. ....
T Consensus 72 a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d--k~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~kw 148 (986)
T 2iw3_A 72 AMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN--KDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVE-TNKW 148 (986)
T ss_dssp HHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH-CCCH
T ss_pred HHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc-ccch
Confidence 45566666655542 11223333333333322222 233567899999999999998853 4457888877743 2257
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCC-chhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh-hhcCCHHHHHHHHHHH
Q 005232 507 QLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK-KLCGYLDGLYNVYRTA 583 (707)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~p~~-~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~-~l~~~~~~l~~~~~~~ 583 (707)
..+-.++.+++++.+-. |+. ...+|.+++.+..++.+.+ +|..+|-.++.++|.-... .+.|+++.|+..+.+
T Consensus 149 ~~k~~~l~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~- 224 (986)
T 2iw3_A 149 QEKIAILAAFSAMVDAA---KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD- 224 (986)
T ss_dssp HHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHh---HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC-
Confidence 88999999999987632 321 2478999999999998754 5999999999999976553 688999988887652
Q ss_pred hhccCCCCCChhhHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhh
Q 005232 584 VNGEGSLKVSAEDSLHLVEALSMVITEL-PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (707)
Q Consensus 584 ~~~~~~~~l~~~~~~~l~eai~~vi~~~-p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 662 (707)
+++ +-+++-.+.+.. =.+-..+. ..++-|++. .-+.... .+ .-+..++.++-++.++.
T Consensus 225 ----------p~~---~~~~~~~l~~~tfv~~v~~~~-l~~~~p~l~---r~l~~~~-~~---~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 225 ----------PTE---VPETVHLLGATTFVAEVTPAT-LSIMVPLLS---RGLNERE-TG---IKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp ----------TTH---HHHHHHHHTTCCCCSCCCHHH-HHHHHHHHH---HHHTSSS-HH---HHHHHHHHHHHHHTTCC
T ss_pred ----------hhh---hHHHHHHhhcCeeEeeecchh-HHHHHHHHH---hhhccCc-ch---hheeeEEEEcchhhhcC
Confidence 122 223322222220 01111233 355666653 3333221 11 22455566787777744
Q ss_pred hcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHh
Q 005232 663 YVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACK 703 (707)
Q Consensus 663 ~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~ 703 (707)
.|..+.+++-++.|-++++.+.. +|+++=|-+-++++
T Consensus 284 ---~~~~~~~f~~~l~p~~~~~~~~~-~~pe~r~~~~~a~~ 320 (986)
T 2iw3_A 284 ---DPQVIAPFLGKLLPGLKSNFATI-ADPEAREVTLRALK 320 (986)
T ss_dssp ---CHHHHHHHHTTTHHHHHHHTTTC-CSHHHHHHHHHHHH
T ss_pred ---CHHHHhhhhhhhhhHHHHHhhcc-CCHHHHHHHHHHHH
Confidence 57778889999999999987764 56666555554444
No 44
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.74 E-value=0.57 Score=45.63 Aligned_cols=138 Identities=10% Similarity=0.105 Sum_probs=89.9
Q ss_pred cCchhhhhhhHHHHHHHHHHHhhccCccccCcccchHHHHHHHHHhhHHH-HHHHHHHHHhhccCCCCCCCCChhhhHHH
Q 005232 327 HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA-YESLVSLVSFRVQYPQDYQDLSLEDLKEF 405 (707)
Q Consensus 327 ~~~~~v~~~~l~FW~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~l~~k~~~p~d~~~~~~d~~~~f 405 (707)
..+..+...++++...+.+.+.+. +|. +.++ ...+++.+++|+--+. |
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~-~y~------------------~~~~ea~~~lP~LveKlGd~k----------~-- 146 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDT-ETP------------------MSQEEVSAFVPYLLLKTGEAK----------D-- 146 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHT-TCC------------------CCHHHHHHHHHHHHHGGGCSS----------H--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhc-ccc------------------chHHHHHHHHHHHHHHhCCCh----------H--
Confidence 346678888899887777666542 121 1111 1346677778773322 2
Q ss_pred HHhhhcccccCCCchhhhhhhhhhhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCC
Q 005232 406 KHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVS 485 (707)
Q Consensus 406 ~~~R~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~ 485 (707)
.+|.. +.++++.++.+.++..++.++.+.+. +.+|+.++.+|..+.++-+...
T Consensus 147 -~vR~~-----------------~r~il~~l~~v~~~~~v~~~l~~g~k---------sKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 147 -NMRTS-----------------VRDIVNVLSDVVGPLKMTPMLLDALK---------SKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp -HHHHH-----------------HHHHHHHHHHHHCHHHHHHHHHHGGG---------CSCHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHH-----------------HHHHHHHHHHHCCHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHHhcC
Confidence 34555 77777778888887767666544331 4679999999999999877654
Q ss_pred ccccccH---HHHHhhcCCCCChHHHHHHHHHHHHhhHHHHh
Q 005232 486 VVEAEVM---PQVMALLPKLPQQPQLLQTVCLTIGAYSKWFD 524 (707)
Q Consensus 486 ~~~~~~l---~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~ 524 (707)
..-...+ +.+.+.+.. .++.||.+++.++.....+..
T Consensus 200 ~~~~~~l~~~~~ia~ll~D--~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 200 ISPLKSLSVEKTVAPFVGD--KDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp SGGGGGGCHHHHHGGGGGC--SSHHHHHHHHHHHHHHHHHHT
T ss_pred CCccccccchHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhh
Confidence 4333345 556555543 479999999999987665543
No 45
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.70 E-value=0.73 Score=44.15 Aligned_cols=214 Identities=13% Similarity=0.092 Sum_probs=121.7
Q ss_pred CCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCch-h-HHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPS-I-LASVL 537 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~-~-l~~~l 537 (707)
.+......++.+++.++..-++. +...++.+++.+.+ .++.++..++.+++.++.. +++... . -..++
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i 88 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASG---PDEAIKAIVDAGGV 88 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcC---ChHHHHHHHHCCCH
Confidence 34666778888888887765422 12456777776654 3589999999999988642 111000 1 11245
Q ss_pred HHHHhccCCCh-HHHHHHHHHHHHHHHH---hhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCCh
Q 005232 538 SILTSGMSTSE-DTAAAAALAFRHICDD---CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (707)
Q Consensus 538 ~~l~~~l~~~~-~v~~~Aa~al~~l~~~---c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (707)
+.++..+.++. .++..|+.++.++|.. .+..+.. ...+..+..++.. -+.+.+.....+++.+...-+
T Consensus 89 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~~- 160 (252)
T 4hxt_A 89 EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTS-----TDSEVQKEAARALANIASGPD- 160 (252)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCH-
Confidence 55555555542 5999999999999943 3333321 1233444444443 236678888888888776532
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHH-HHHhHHHHHHHHhhcCch
Q 005232 614 VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDM 692 (707)
Q Consensus 614 ~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~-~~~~p~l~~i~~~~~~~~ 692 (707)
+...... . ...+..|.+++.... ..-....+..++.+... .++-...+. ..++|.+.++++. .+.
T Consensus 161 ~~~~~~~-~--~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~--~~~ 226 (252)
T 4hxt_A 161 EAIKAIV-D--AGGVEVLVKLLTSTD-------SEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLTS--TDS 226 (252)
T ss_dssp HHHHHHH-H--TTHHHHHHHHTTCSC-------HHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGGC--SCH
T ss_pred HHHHHHH-H--CcCHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHCC--CcH
Confidence 2222221 1 345555556665322 11122334555555431 122222222 3467777777764 577
Q ss_pred hHHHHHHHHHhhh
Q 005232 693 RTMESLCRACKYA 705 (707)
Q Consensus 693 ~v~e~~c~~~~~~ 705 (707)
++-+.++.++...
T Consensus 227 ~v~~~a~~~L~~l 239 (252)
T 4hxt_A 227 EVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999888764
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.50 E-value=6.6 Score=42.58 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=77.9
Q ss_pred CCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCC---chhHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASV 536 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~---~~~l~~~ 536 (707)
.++.-.+.++.+++.++..-+.. +...++.+++++.. .++.++..++++++..+..-..+... ...++.+
T Consensus 305 ~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~L 382 (529)
T 3tpo_A 305 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 382 (529)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC--SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC--CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHH
Confidence 55677788899998887543221 12344555554432 36889999999999876421111000 0144444
Q ss_pred HHHHHhccCCC-hHHHHHHHHHHHHHHHHhhhh----hc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHh
Q 005232 537 LSILTSGMSTS-EDTAAAAALAFRHICDDCRKK----LC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (707)
Q Consensus 537 l~~l~~~l~~~-~~v~~~Aa~al~~l~~~c~~~----l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (707)
+..+ .++ .+++..|+.||.+++..+... |. ..++.|+ +++.. -+.+.+..+++++..++.
T Consensus 383 v~lL----~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~----~LL~~-----~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 383 VGVL----SKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLM----NLLSA-----KDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHH----HSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH----HGGGC-----SCHHHHHHHHHHHHHHHH
T ss_pred HHHh----cCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHH----HHhcC-----CCHHHHHHHHHHHHHHHH
Confidence 4444 333 248999999999999865432 22 3344444 44443 246667778888887775
Q ss_pred c
Q 005232 610 E 610 (707)
Q Consensus 610 ~ 610 (707)
.
T Consensus 450 ~ 450 (529)
T 3tpo_A 450 A 450 (529)
T ss_dssp H
T ss_pred H
Confidence 4
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.23 E-value=0.7 Score=44.49 Aligned_cols=215 Identities=12% Similarity=0.076 Sum_probs=119.8
Q ss_pred CCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l-~~~l~ 538 (707)
.+......++.+++.+...-.+. +...++.+++.+..- ++.++..++.+++.++.--..+.. ... ..+++
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i~ 99 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQ--AVIDAGALP 99 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHH--HHHHcCCHH
Confidence 44566677788886544431111 124567777766542 489999999999988741111100 011 12556
Q ss_pred HHHhccCCCh-HHHHHHHHHHHHHHHHhhhh---hcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChH
Q 005232 539 ILTSGMSTSE-DTAAAAALAFRHICDDCRKK---LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (707)
Q Consensus 539 ~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~---l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~ 614 (707)
.++..+.++. .++..|+.+|.+++...... +. -...+..+..++..+ +...+...+.+++.+...-+ +
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~-~ 171 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI--DAGALPALVQLLSSP-----NEQILQEALWALSNIASGGN-E 171 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--HTTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHTTSCH-H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHH--HCCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcCCh-H
Confidence 6666665543 49999999999998653322 21 112344444455432 46678888888888876532 2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHH-HHhHHHHHHHHhhcCchh
Q 005232 615 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAIFDIRAWDMR 693 (707)
Q Consensus 615 ~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~-~~~p~l~~i~~~~~~~~~ 693 (707)
....... ...+..|-+++...+ ..-....+..|+.+... .++....+.+ ..+|.|.+++.. .+.+
T Consensus 172 ~~~~~~~---~~~i~~L~~ll~~~~-------~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~--~~~~ 237 (252)
T 4db8_A 172 QIQAVID---AGALPALVQLLSSPN-------EQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSH--ENEK 237 (252)
T ss_dssp HHHHHHH---TTCHHHHHHGGGCSS-------HHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHTTTTC--SSSH
T ss_pred HHHHHHH---CCCHHHHHHHHCCCC-------HHHHHHHHHHHHHHhcC--CHHHHHHHHHCCcHHHHHHHhCC--CCHH
Confidence 2211111 344555555555331 11222344555555431 1222233333 477777777754 5779
Q ss_pred HHHHHHHHHhhh
Q 005232 694 TMESLCRACKYA 705 (707)
Q Consensus 694 v~e~~c~~~~~~ 705 (707)
+-+.+|.++...
T Consensus 238 v~~~A~~~L~~l 249 (252)
T 4db8_A 238 IQKEAQEALEKL 249 (252)
T ss_dssp HHHTHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.17 E-value=7.5 Score=41.92 Aligned_cols=213 Identities=12% Similarity=0.128 Sum_probs=115.8
Q ss_pred CCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHH-----
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA----- 534 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~----- 534 (707)
.+..-++.++++++.+++.-... +...++.+++.+.. .++.++..++.++|.++.. ++. .-.
T Consensus 244 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~nl~~~---~~~---~~~~i~~~ 315 (510)
T 3ul1_B 244 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTG---TDE---QTQKVIDA 315 (510)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTS---CHH---HHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--CChhhhhHHHHHHHHhhcC---CHH---HHHHHhhc
Confidence 45566788899999988764322 23456777776654 3678999999999987521 111 111
Q ss_pred HHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 535 SVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 535 ~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~---~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
.+++.+...+.++. .++..|+.++.+++..... .+... .++..+..++.. -+.+.+.....+++.++..
T Consensus 316 g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~--g~i~~Lv~lL~~-----~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 316 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH--GLVPFLVGVLSK-----ADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc--CCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcc
Confidence 12333444455553 5899999999999854332 22211 133334444443 2467788888899988876
Q ss_pred CChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC---CcccHHHHHHH--HhHHHHHHH
Q 005232 611 LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN---HPEAVADAIQR--LWPIFKAIF 685 (707)
Q Consensus 611 ~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~---~~~p~~~~~~~--~~p~l~~i~ 685 (707)
-..+....... ...+..|-+++...+ .+-....++.|..+++... ..+++...+++ .+..|+.+.
T Consensus 389 ~~~~~~~~L~~---~g~i~~L~~LL~~~d-------~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 458 (510)
T 3ul1_B 389 GTVEQIVYLVH---CGIIEPLMNLLSAKD-------TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458 (510)
T ss_dssp CCHHHHHHHHH---TTCHHHHHHGGGCSC-------HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred CCHHHHHHHHH---CCCHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence 55443322211 233444445554321 1233345666666665432 12233333332 344444432
Q ss_pred HhhcCchhHHHHHHHHHhh
Q 005232 686 DIRAWDMRTMESLCRACKY 704 (707)
Q Consensus 686 ~~~~~~~~v~e~~c~~~~~ 704 (707)
. -.+.+|.+++.+++..
T Consensus 459 -~-~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 459 -R-HENESVYKASLNLIEK 475 (510)
T ss_dssp -G-CSSHHHHHHHHHHHHH
T ss_pred -c-CCCHHHHHHHHHHHHH
Confidence 2 2455677777766643
No 49
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=93.79 E-value=2 Score=47.80 Aligned_cols=112 Identities=10% Similarity=0.070 Sum_probs=75.0
Q ss_pred CcchhhHHHHHHHHhhccCCcc-ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHH--HHHHHHHh
Q 005232 466 EWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA--SVLSILTS 542 (707)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~--~~l~~l~~ 542 (707)
+--.+-.||.+++.+.. ++ -..+++.+.+.+.+-..+|.||++++.++.++.. .+|+ .++ ..++.+..
T Consensus 124 n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~---~~p~---~~~~~~~~~~l~~ 194 (621)
T 2vgl_A 124 NPTFMGLALHCIANVGS---REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR---TSPD---LVPMGDWTSRVVH 194 (621)
T ss_dssp CHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH---HCGG---GCCCCSCHHHHHH
T ss_pred CHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH---hChh---hcCchhHHHHHHH
Confidence 34445678888887754 22 1223445555552223589999999999998765 4455 344 45555555
Q ss_pred ccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhc
Q 005232 543 GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (707)
Q Consensus 543 ~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~ 586 (707)
.+.++. .|...|..++..+|......+.++++.++..+.+++..
T Consensus 195 lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~ 239 (621)
T 2vgl_A 195 LLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTS 239 (621)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHC
T ss_pred HhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhC
Confidence 665543 48889999999999887777778888888877777653
No 50
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.51 E-value=5.5 Score=39.53 Aligned_cols=210 Identities=11% Similarity=0.087 Sum_probs=108.3
Q ss_pred hhhHHHHHHHHhhccCCccc----cccHHHHHh-hcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc------hhHHHHH
Q 005232 469 PAEAALFCIRAISTYVSVVE----AEVMPQVMA-LLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SILASVL 537 (707)
Q Consensus 469 ~~Ea~l~~l~~ia~~~~~~~----~~~l~~l~~-~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~------~~l~~~l 537 (707)
.++.++..+..+.+...... ...+|.+++ .|.+ +++.++..++++||..+. .+|... ..+++++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s--~~~~vr~~Aa~~Lg~ia~---~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQ---NVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHHHHh---CCHHHHHHHHHCCCHHHHH
Confidence 34455555555555433221 134666776 5443 479999999999998752 223210 1445555
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCH-HHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHH
Q 005232 538 SILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (707)
Q Consensus 538 ~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~ 616 (707)
..+... .+..++..|+.||.++|.........+. ...+..+..++.. -+...+....-+++++... .++..
T Consensus 131 ~LL~~~--~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-----~d~~v~~~A~~aLs~L~~~-~~~~~ 202 (296)
T 1xqr_A 131 RLLDRD--ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-----QVQKLKVKSAFLLQNLLVG-HPEHK 202 (296)
T ss_dssp HHHHHC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-----SCHHHHHHHHHHHHHHHHH-CGGGH
T ss_pred HHHccC--CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhC-ChHHH
Confidence 444321 1234899999999999965433111111 0123333444443 2467788889999988877 33322
Q ss_pred HHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC-------Cc-ccHHHHHHHHhHHHHHHHHhh
Q 005232 617 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN-------HP-EAVADAIQRLWPIFKAIFDIR 688 (707)
Q Consensus 617 ~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-------~~-~p~~~~~~~~~p~l~~i~~~~ 688 (707)
....+ ...+..|-.++..... .-....+..++.+++... .. .+...++++. ++. ++..
T Consensus 203 ~~vv~---~g~i~~Lv~LL~~~d~-------~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~---~~~-lq~~ 268 (296)
T 1xqr_A 203 GTLCS---MGMVQQLVALVRTEHS-------PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR---CQL-LQQH 268 (296)
T ss_dssp HHHHH---TTHHHHHHHHHTSCCS-------THHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH---HHH-HTTC
T ss_pred HHHHH---cCCHHHHHHHHcCCCh-------hHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH---HHH-ccch
Confidence 22221 1233334445553321 122245566666655411 01 1233333332 222 2223
Q ss_pred cCchhHHHHHHHHHhhh
Q 005232 689 AWDMRTMESLCRACKYA 705 (707)
Q Consensus 689 ~~~~~v~e~~c~~~~~~ 705 (707)
....++.+.+.++++.-
T Consensus 269 e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 269 EEYQEELEFCEKLLQTC 285 (296)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33468888888887653
No 51
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.33 E-value=2.6 Score=44.16 Aligned_cols=173 Identities=10% Similarity=0.065 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Q 005232 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (707)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~ 583 (707)
++..+.-+..+|.+|. ++.|+ +-..+++.++....+.. .++..|-+.|-.||.+ .++.-+.+.+.++
T Consensus 41 ~~k~K~LaaQ~I~kff---k~FP~---l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Ql 108 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFF---KHFPE---LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQL 108 (507)
T ss_dssp CHHHHHHHHHHHHHHG---GGCGG---GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH---hhChh---hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHH
Confidence 4667777777777654 44454 66677776666555443 3666666666666654 3455666666666
Q ss_pred hhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhh-------------------------------hHHHHH
Q 005232 584 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLP-------------------------------VVTPLQ 632 (707)
Q Consensus 584 ~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p-------------------------------~~~~L~ 632 (707)
++.. +..+...+=.++..++..=|.......+.++... +.+.+.
T Consensus 109 Lqtd-----d~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ik 183 (507)
T 3u0r_A 109 LQTD-----DSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESK 183 (507)
T ss_dssp TTCC-----CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHH
T ss_pred Hhcc-----chHHHHHHHHHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHH
Confidence 6542 2445555555555555553322222222222221 111112
Q ss_pred HHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHh---hc-CchhHHHHHHHHHhhhh
Q 005232 633 EIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDI---RA-WDMRTMESLCRACKYAV 706 (707)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~---~~-~~~~v~e~~c~~~~~~~ 706 (707)
++++.- -...+.++-.+++.++...-+ .=.+++.+++....+- |. .|.+.++++..|+++|+
T Consensus 184 K~L~DV-----------T~~EF~L~m~lL~~lkl~~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~AL 249 (507)
T 3u0r_A 184 KVLEDV-----------TGEEFVLFMKILSGLKSLQTV-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAV 249 (507)
T ss_dssp HHTTSC-----------CHHHHHHHHHHHHTSGGGSSH-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHG
T ss_pred HHhccc-----------cHHHHHHHHHHHHhcccccCc-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHH
Confidence 222100 012334444444444321111 3346778877776542 44 68999999999999985
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.68 E-value=0.56 Score=54.48 Aligned_cols=172 Identities=15% Similarity=0.234 Sum_probs=111.1
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-C-CChH
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQP 506 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l-~~~~ 506 (707)
+......++..+++..+ ..+...+..++.. ...|+...++|-++..+++..+..-...+|.++..+.. + ...+
T Consensus 115 a~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~----~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~ 189 (986)
T 2iw3_A 115 ASETLISIVNAVNPVAI-KALLPHLTNAIVE----TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKK 189 (986)
T ss_dssp HHHHHHHHHHHSCGGGH-HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHhCCHHHH-HHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcH
Confidence 55566677777776543 4445555555432 35799999999999999998754344557888877754 2 3478
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchh----------------------------------HHHHHHHHHhccCCCh-HHH
Q 005232 507 QLLQTVCLTIGAYSKWFDAASSDPSI----------------------------------LASVLSILTSGMSTSE-DTA 551 (707)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~p~~~~~----------------------------------l~~~l~~l~~~l~~~~-~v~ 551 (707)
.|..++..++..++.-+.+ .+...+ |.-+.+.|.+||.++. ...
T Consensus 190 ~v~~~~~~~~~~~~~~~~n-~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~ 268 (986)
T 2iw3_A 190 EVKAAATAAMTKATETVDN-KDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 268 (986)
T ss_dssp HHHHHHHHHHHHHGGGCCC-TTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-cchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhh
Confidence 8888888888888776553 222112 2233455556665543 356
Q ss_pred HHHHHHHHHHHHHh--hhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 552 AAAALAFRHICDDC--RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 552 ~~Aa~al~~l~~~c--~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
+.++.-+.++|+-- .....||++.|+..+..+..+ --+++.|...-+|+..+...
T Consensus 269 r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~----~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 269 RKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFAT----IADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTT----CCSHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhc----cCCHHHHHHHHHHHHHHHHh
Confidence 77888888888643 335557888888888777654 23467777766666655433
No 53
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.25 E-value=3.9 Score=40.57 Aligned_cols=194 Identities=15% Similarity=0.087 Sum_probs=107.1
Q ss_pred cccccHHHHHhhcCCC-CC---------hHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHHHHHHh-ccCCCh-HHHHH
Q 005232 487 VEAEVMPQVMALLPKL-PQ---------QPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLSILTS-GMSTSE-DTAAA 553 (707)
Q Consensus 487 ~~~~~l~~l~~~l~~l-~~---------~~~l~~t~~~~ig~~~~~l~~~p~~~~~l-~~~l~~l~~-~l~~~~-~v~~~ 553 (707)
++.+.++.++++|.+- |. ...-+..++..+..+.+-+..-.. +. ...++.++. .+.++. .++..
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~---~~~~G~l~~Lv~~lL~s~~~~vr~~ 101 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAAD---FCQLSGMHLLVGRYLEAGAAGLRWR 101 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHH---HHHTTHHHHHHHTTTTCSSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHH---HHHcCCHHHHHHHHHcCCCHHHHHH
Confidence 3455678888877542 21 234566777777776653332100 11 133455555 666653 59999
Q ss_pred HHHHHHHHHH---Hhhhhhc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhH
Q 005232 554 AALAFRHICD---DCRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 628 (707)
Q Consensus 554 Aa~al~~l~~---~c~~~l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~ 628 (707)
|+.++.+++. .|+..+. .-++.|+..+.. . .+...+...+.+++.++..-++. ...... ...+
T Consensus 102 Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~---~-----~~~~v~~~A~~ALsnl~~~~~~~-~~~~~~---~ggi 169 (296)
T 1xqr_A 102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR---D-----ACDTVRVKALFAISCLVREQEAG-LLQFLR---LDGF 169 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH---C-----SCHHHHHHHHHHHHHHHTTCHHH-HHHHHH---TTHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc---C-----CCHHHHHHHHHHHHHHHcCCcHH-HHHHHH---CCCH
Confidence 9999999995 3555544 345555555432 1 23567888999999988764431 112221 1334
Q ss_pred HHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHH-HHhHHHHHHHHhhcCchhHHHHHHHHHhhhh
Q 005232 629 TPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAIFDIRAWDMRTMESLCRACKYAV 706 (707)
Q Consensus 629 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~-~~~p~l~~i~~~~~~~~~v~e~~c~~~~~~~ 706 (707)
..|..+++.... .-.....-.|+.+... .++....+.+ .+.|.|-.++.. .|..+.|.+++++...+
T Consensus 170 ~~L~~lL~~~d~-------~v~~~A~~aLs~L~~~--~~~~~~~vv~~g~i~~Lv~LL~~--~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 170 SVLMRAMQQQVQ-------KLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRT--EHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHHSSCH-------HHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTS--CCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCH-------HHHHHHHHHHHHHHhC--ChHHHHHHHHcCCHHHHHHHHcC--CChhHHHHHHHHHHHHH
Confidence 444555553321 1112233444444333 2333333333 567777777765 46788888888877654
No 54
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=92.19 E-value=0.29 Score=45.77 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=84.1
Q ss_pred CCCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHH
Q 005232 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 537 (707)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l-~~~l 537 (707)
..++.-.+.++.+++.++..-+.. +...++.+++.|.. .++.++..++.+++.++..-..+.. ..+ ..++
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i 98 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 98 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcHHHH--HHHHCCCH
Confidence 356777889999999998653322 12456777776654 3789999999999988631111000 000 1234
Q ss_pred HHHHhccCCCh-HHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcC
Q 005232 538 SILTSGMSTSE-DTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (707)
Q Consensus 538 ~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~---~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (707)
+.++..+.++. .++..|+.++.+++..... .+.. ...+..+..++.. -+.+.+...+.+++.+...-
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSS-----PNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH--cCcHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCC
Confidence 45555555543 4899999999999964332 2211 1234444444443 24677888889998888753
No 55
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=92.01 E-value=3.7 Score=40.90 Aligned_cols=145 Identities=9% Similarity=0.157 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcC-----C-CCccHH-HHHHHHHHHHhhhccCCCCCCCCc-HhHH
Q 005232 194 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL-----H-SEILSE-ASVNVISELIHYSAAGSSGGATVN-MPLI 265 (707)
Q Consensus 194 ~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L-----~-~~~~~~-~a~~~l~~ii~~~~~~~~~~~~~~-~~~~ 265 (707)
+++.+|+-+..|+.-. +........+++.+++.+ . .|+..+ ...+++..++.+..... ... ...+
T Consensus 45 vKkeiLkLiet~i~~~---~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i----~~~vp~Il 117 (321)
T 1w9c_A 45 VKRETLKLISGWVSRS---NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHI----TAEIPQIF 117 (321)
T ss_dssp HHHHHHHHHHHHHTTC---SCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGG----GGGHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHh----hhhHHHHH
Confidence 5677888888888743 111112233444443322 1 245543 45677777777654211 111 2233
Q ss_pred HHHHHhHhhhHHHhccC-CCCHHHHHHHHHHHHHHhhHHHHHHHcCC-cchHHHHHHHhhhcccCchhhhhhhHHHHHHH
Q 005232 266 QVIVPQIMSLKAHLTDS-SKDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSL 343 (707)
Q Consensus 266 ~~l~~~v~~l~~~l~~~-~~d~~~~~~l~~l~~~l~e~~~~~i~~~~-~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l 343 (707)
..+|.-- .+.+.+. ++-+|...++.+++-++.......+.+=| +.+..+++.++...+|+.++|++.++.-...+
T Consensus 118 ~~VFe~T---L~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~l 194 (321)
T 1w9c_A 118 DAVFECT---LNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTL 194 (321)
T ss_dssp HHHHHHH---HHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 4444321 2222222 34457777888888888877666665533 45788889999999999999999999998777
Q ss_pred HHHHh
Q 005232 344 QVILT 348 (707)
Q Consensus 344 ~~~l~ 348 (707)
.+.+.
T Consensus 195 l~n~~ 199 (321)
T 1w9c_A 195 LQNVA 199 (321)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76664
No 56
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.42 E-value=3.7 Score=38.08 Aligned_cols=109 Identities=12% Similarity=0.164 Sum_probs=71.5
Q ss_pred CCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 005232 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (707)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~ 543 (707)
..+|..+..++.+++.+++ .+.++.+++.+.+ .++.+|..++..+|.+.. ++ .++.++..
T Consensus 30 ~~~~~vR~~A~~~L~~~~~------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~-----~~---~~~~L~~~---- 89 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGD------ERAVEPLIKALKD--EDAWVRRAAADALGQIGD-----ER---AVEPLIKA---- 89 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCC-----GG---GHHHHHHH----
T ss_pred CCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC-----HH---HHHHHHHH----
Confidence 3567878888888887764 2456777776654 379999999999998752 32 45544444
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHH
Q 005232 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (707)
Q Consensus 544 l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (707)
+.++. .++..|+.++.++... ..+..+...+.. -+...+...+.+++.+
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKD-----EDWFVRIAAAFALGEI 139 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhC-----CCHHHHHHHHHHHHHc
Confidence 45543 4888999998876431 122333344433 2466788888888876
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=91.27 E-value=11 Score=36.48 Aligned_cols=212 Identities=12% Similarity=0.049 Sum_probs=117.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHH
Q 005232 8 KEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (707)
Q Consensus 8 ~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~L 87 (707)
...+..+ .++|+..|..|-..|.++. ++++......+|.+ .+..+|..|+..|...-. +++....+-..|
T Consensus 26 ~~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d--~~~~vR~~A~~aL~~l~~------~~~~~~~l~~~L 95 (280)
T 1oyz_A 26 DELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSD--KNYIRRDIGAFILGQIKI------CKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTC--SSHHHHHHHHHHHHHSCC------CTTTHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcC--CCHHHHHHHHHHHHHhcc------ccccchHHHHHH
Confidence 3334444 6789999999999999886 78888888888874 467899999999865321 112222222223
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhccchhh-cccc---cc-c
Q 005232 88 NTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEE-VFNY---KI-A 161 (707)
Q Consensus 88 l~~l~~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~EE-~~~~---~~-~ 161 (707)
.+.+.+ .....|+...+.+|+.+....+. ..+. .++.+...+++.. .........|..+..+ .... -+ .
T Consensus 96 ~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~-~~~~--~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d 170 (280)
T 1oyz_A 96 NNMALN--DKSACVRATAIESTAQRCKKNPI-YSPK--IVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKD 170 (280)
T ss_dssp HHHHHH--CSCHHHHHHHHHHHHHHHHHCGG-GHHH--HHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTC
T ss_pred HHHHhc--CCCHHHHHHHHHHHHHHhccCCc-ccHH--HHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcC
Confidence 222222 35678999999999888754321 1222 5566665554422 1122233333333221 0000 00 0
Q ss_pred CChHHHHHHHHHHHHh---hHHHHHHHHHhhhhh--HHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCCccH
Q 005232 162 ARPERRRQFEKELTSQ---MEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILS 236 (707)
Q Consensus 162 ~~~~~r~~~~~~l~~~---~~~Vl~~l~~~l~~~--~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~ 236 (707)
-...-|......|... .+.++..+...+..+ .++..++.++... . ....++.+...+.++++.
T Consensus 171 ~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~-------~-----~~~~~~~L~~~l~d~~vr 238 (280)
T 1oyz_A 171 PNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR-------K-----DKRVLSVLCDELKKNTVY 238 (280)
T ss_dssp SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT-------T-----CGGGHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-------C-----CHhhHHHHHHHhcCccHH
Confidence 0122333333334332 456666666666543 4677777776421 1 134566677777777777
Q ss_pred HHHHHHHHHH
Q 005232 237 EASVNVISEL 246 (707)
Q Consensus 237 ~~a~~~l~~i 246 (707)
..|+.+|..+
T Consensus 239 ~~a~~aL~~i 248 (280)
T 1oyz_A 239 DDIIEAAGEL 248 (280)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777665
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.14 E-value=2.5 Score=38.87 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=70.6
Q ss_pred CCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhcc
Q 005232 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM 544 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l 544 (707)
.+|..+..++.+++.++. ...++.++..+.. .++.+|..++..+|++.. ++ .++.++. .+
T Consensus 57 ~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~-----~~---~~~~L~~----~l 116 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGD------ERAVEPLIKALKD--EDGWVRQSAAVALGQIGD-----ER---AVEPLIK----AL 116 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC-----GG---GHHHHHH----HT
T ss_pred CCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc-----HH---HHHHHHH----HH
Confidence 567777788888877653 2356777776644 479999999999998642 32 4444444 44
Q ss_pred CCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHH
Q 005232 545 STSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (707)
Q Consensus 545 ~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (707)
.++. .++..|+.++.++.. +..+..+..++.. -+...+...+++++.+
T Consensus 117 ~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d-----~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 117 KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKD-----EDGWVRQSAADALGEI 165 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcC-----CCHHHHHHHHHHHHHh
Confidence 5543 489999999988742 1123334444443 2466788888888876
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=90.59 E-value=13 Score=36.02 Aligned_cols=177 Identities=11% Similarity=0.085 Sum_probs=102.9
Q ss_pred CCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 005232 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (707)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~ 543 (707)
..++.-+.+++.+++.++...+......++.++..+.. .++.||..++..+|.++. +. .++.++..+
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d--~~~~vR~~a~~aL~~~~~-----~~---~~~~L~~~l--- 168 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD--KSTNVRRATAFAISVIND-----KA---TIPLLINLL--- 168 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC--SCHHHHHHHHHHHHTC--------C---CHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC--CCHHHHHHHHHHHHhcCC-----HH---HHHHHHHHH---
Confidence 35677788999999998765433233345555555433 479999999999998764 33 455555543
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005232 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEM 622 (707)
Q Consensus 544 l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~ 622 (707)
.++. .++..|+.++.++. +.-+..+..+...+.. -+...|...+.+++.+- ++..
T Consensus 169 -~d~~~~vr~~a~~aL~~~~--------~~~~~~~~~L~~~l~d-----~~~~vR~~A~~aL~~~~----~~~~------ 224 (280)
T 1oyz_A 169 -KDPNGDVRNWAAFAININK--------YDNSDIRDCFVEMLQD-----KNEEVRIEAIIGLSYRK----DKRV------ 224 (280)
T ss_dssp -TCSSHHHHHHHHHHHHHHT--------CCCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHTT----CGGG------
T ss_pred -cCCCHHHHHHHHHHHHhhc--------cCcHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHhC----CHhh------
Confidence 4443 48999999998763 1223445555555543 23667888888877643 2222
Q ss_pred hhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHHHhhcCchhHHHHHHHHH
Q 005232 623 LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 702 (707)
Q Consensus 623 l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~ 702 (707)
+..|...++... .+. ..+..++.+ +.+ ...|.|.++++.. .+.+++..+...+
T Consensus 225 -----~~~L~~~l~d~~-------vr~--~a~~aL~~i----~~~--------~~~~~L~~~l~~~-~~~~~~~~~~~~l 277 (280)
T 1oyz_A 225 -----LSVLCDELKKNT-------VYD--DIIEAAGEL----GDK--------TLLPVLDTMLYKF-DDNEIITSAIDKL 277 (280)
T ss_dssp -----HHHHHHHHTSSS-------CCH--HHHHHHHHH----CCG--------GGHHHHHHHHTTS-SCCHHHHHHHHHH
T ss_pred -----HHHHHHHhcCcc-------HHH--HHHHHHHhc----Cch--------hhhHHHHHHHhcC-CCcHHHHHHHHHh
Confidence 222223333211 111 223444433 211 4678888888765 3567777777776
Q ss_pred hh
Q 005232 703 KY 704 (707)
Q Consensus 703 ~~ 704 (707)
++
T Consensus 278 ~~ 279 (280)
T 1oyz_A 278 KR 279 (280)
T ss_dssp TC
T ss_pred hc
Confidence 64
No 60
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=90.42 E-value=7.6 Score=36.70 Aligned_cols=219 Identities=15% Similarity=0.099 Sum_probs=126.1
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChh
Q 005232 9 EALNALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSE 78 (707)
Q Consensus 9 ~al~~ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~ 78 (707)
..+..+ .++++..|..|-..|..+-... ++......+|.+ .+..++..|+..|.+....+ ++
T Consensus 6 ~L~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~-----~~ 77 (252)
T 4hxt_A 6 KLVKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGP-----DE 77 (252)
T ss_dssp HHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSC-----HH
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCC-----hH
Confidence 334344 5677999999999999886543 345556677764 45789999999999876532 33
Q ss_pred hHH-HHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhccccccC---CccchHHHHHhcCCCC-CchhHHHHHhccch
Q 005232 79 AVR-GLQDSLNTLLKKF-HKGPPKVRTQISIAVAALAVHISAEDWG---GGGIVNWLRDEMNSHP-EFVPGFLELLTVLP 152 (707)
Q Consensus 79 ~~~-~lr~~Ll~~l~~~-~~~~~~v~~qL~~ala~l~~~~~~~~W~---~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~ 152 (707)
.+. .++...+..+... ..++..++...+.+|+.++..... ... +.+.++.+++.+.+.. ......+..|..+.
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 333 2333455555553 235678899888888888743221 000 0125677777776532 23344555555553
Q ss_pred hhcccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhh--hHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcC
Q 005232 153 EEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL 230 (707)
Q Consensus 153 EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~--~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L 230 (707)
.. .+..+..+.+ ..++..+...+.+ +.++..++.++..-...... -...+.....++.+.+.+
T Consensus 157 ~~--------~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 157 SG--------PDEAIKAIVD------AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp TS--------CHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHH-HHHHHHHTTHHHHHHHGG
T ss_pred cC--------CHHHHHHHHH------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHH
Confidence 32 1122111111 1234444455544 35778888887765531100 000122345677777777
Q ss_pred CCC--ccHHHHHHHHHHHHhhhc
Q 005232 231 HSE--ILSEASVNVISELIHYSA 251 (707)
Q Consensus 231 ~~~--~~~~~a~~~l~~ii~~~~ 251 (707)
.++ ++...|+.+|..+.....
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHHTCB
T ss_pred CCCcHHHHHHHHHHHHHHHcCCC
Confidence 654 567888999998887554
No 61
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=89.73 E-value=26 Score=41.41 Aligned_cols=169 Identities=7% Similarity=0.157 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcC------CCCccHH-HHHHHHHHHHhhhccCCCCCCCCcHhHHH
Q 005232 194 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL------HSEILSE-ASVNVISELIHYSAAGSSGGATVNMPLIQ 266 (707)
Q Consensus 194 ~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L------~~~~~~~-~a~~~l~~ii~~~~~~~~~~~~~~~~~~~ 266 (707)
+++.+++.+..||.-. +........+++.+++.+ +.|+..+ ....++..++.+...... +.-...++
T Consensus 753 ik~eil~l~~~~i~~~---~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~---~~~~~il~ 826 (1073)
T 3gjx_A 753 VKRETLKLISGWVSRS---NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHIT---AEIPQIFD 826 (1073)
T ss_dssp HHHHHHHHHHHHHTTC---SCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTG---GGHHHHHH
T ss_pred HHHHHHHHHHHHHhcC---CCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcc---hhHHHHHH
Confidence 6778889999999743 111111223333333332 2344443 346667777766543210 01122334
Q ss_pred HHHHhHhhhHHHhccC-CCCHHHHHHHHHHHHHHhhHHHHHHHcCC-cchHHHHHHHhhhcccCchhhhhhhHHHHHHHH
Q 005232 267 VIVPQIMSLKAHLTDS-SKDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSLQ 344 (707)
Q Consensus 267 ~l~~~v~~l~~~l~~~-~~d~~~~~~l~~l~~~l~e~~~~~i~~~~-~~~~~~~~~ll~~~~~~~~~v~~~~l~FW~~l~ 344 (707)
.+|.--+ +.+.++ .+-+|....+.+++..+.......+..-| +.+..+++-++...+|+..++++.++.+.+.+.
T Consensus 827 ~vf~~Tl---~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll 903 (1073)
T 3gjx_A 827 AVFECTL---NMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLL 903 (1073)
T ss_dssp HHHHHHH---HHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 4443212 222222 34457777889999988887666555544 356778888888899999999999999988887
Q ss_pred HHHhhccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHh
Q 005232 345 VILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSF 386 (707)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 386 (707)
+.+...+ +.....|+.+|..++..++.
T Consensus 904 ~~~~~~~---------------~~~~~F~~~~~~~~~~~i~~ 930 (1073)
T 3gjx_A 904 QNVAQEE---------------AAAQSFYQTYFCDILQHIFS 930 (1073)
T ss_dssp HHHTTCH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCh---------------HHHHHHHHHHHHHHHHHHHH
Confidence 7664210 12345666677777666554
No 62
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=89.54 E-value=4.2 Score=37.52 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=78.8
Q ss_pred CCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc-hh-HHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SI-LASVL 537 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~-~~-l~~~l 537 (707)
.+..-.+.++.+++.++..-+.. +...++.+++.+.. .++.++..++.+++.++.. +++.. .. -..++
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i 140 (210)
T 4db6_A 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASG---GNEQIQAVIDAGAL 140 (210)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC--CcHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCcH
Confidence 45677889999999998543322 13457777777654 2689999999999998741 11100 00 11234
Q ss_pred HHHHhccCCCh-HHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHH
Q 005232 538 SILTSGMSTSE-DTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 608 (707)
Q Consensus 538 ~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~---~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi 608 (707)
+.+++.+.++. .++..|+.+|.++|..... .+.. ...+..+..++.. -+.+.+.....+++.+.
T Consensus 141 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE--AGALEKLEQLQSH-----ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH--CCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHh
Confidence 44555555432 4999999999999964322 2211 1234444455543 23556777777766553
No 63
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=89.52 E-value=0.75 Score=44.27 Aligned_cols=134 Identities=18% Similarity=0.171 Sum_probs=83.0
Q ss_pred CCcchhhHHHHHHHHhhccCCccc-----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~ 539 (707)
.+..-.+.++.+++.++..-+... ...++.+++.+.+ .++.++..++.+++.++..-..... .-.-..+++.
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~ 142 (252)
T 4db8_A 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ-AVIDAGALPA 142 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHH-HHHHCCCHHH
Confidence 346677888999998887533221 2356777776655 3789999999999988642111000 0011125556
Q ss_pred HHhccCCCh-HHHHHHHHHHHHHHHHhh---hhhc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 540 LTSGMSTSE-DTAAAAALAFRHICDDCR---KKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 540 l~~~l~~~~-~v~~~Aa~al~~l~~~c~---~~l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
+++.+.++. .++..|+.+|.+++.... ..+. ..++.++ .++..+ +.+.+...+.+++.+...
T Consensus 143 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~----~ll~~~-----~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV----QLLSSP-----NEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH----HGGGCS-----SHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH----HHHCCC-----CHHHHHHHHHHHHHHhcC
Confidence 666665543 489999999999996332 2222 3344444 444432 466788888888888754
No 64
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.37 E-value=4 Score=37.79 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=70.7
Q ss_pred CCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhcc
Q 005232 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM 544 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l 544 (707)
.+|.-+..++.+++.++. ...++.+++.+.. .++.+|..++..+|.+.. ++ .++.++ ..+
T Consensus 62 ~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~-----~~---~~~~L~----~~l 121 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGD------ERAVEPLIKALKD--EDGWVRQSAAVALGQIGD-----ER---AVEPLI----KAL 121 (211)
T ss_dssp SCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC-----GG---GHHHHH----HHT
T ss_pred CCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc-----HH---HHHHHH----HHH
Confidence 467777888888887763 2356777766543 478999999999998742 32 444444 445
Q ss_pred CCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHH
Q 005232 545 STSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (707)
Q Consensus 545 ~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~v 607 (707)
.++. .++..|+.+|.++... ..+..+..++.. -+...+...+++++.+
T Consensus 122 ~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 122 KDEDWFVRIAAAFALGEIGDE----------RAVEPLIKALKD-----EDGWVRQSAADALGEI 170 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHcC-----CCHHHHHHHHHHHHHh
Confidence 5543 4899999999887321 123334444433 2356788888888876
No 65
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.97 E-value=3 Score=49.29 Aligned_cols=163 Identities=9% Similarity=0.065 Sum_probs=97.1
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC-----Ch-HHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Q 005232 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-----SE-DTAAAAALAFRHICDDCRKKLCGYLDGLY 577 (707)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~-----~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~ 577 (707)
.+...+.++++.+|+.++=..... ...+++.+++++++...+ ++ .++..++..+.++++=...+ ..++++++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~-e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHH
Confidence 468999999999999875332110 013788999988875542 22 25556778888888765432 13577777
Q ss_pred HHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHH--------HHhhhhhHHHHHHHHhcCCCcccccCchh
Q 005232 578 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL--------EMLCLPVVTPLQEIINQGPEILQKKHPRD 649 (707)
Q Consensus 578 ~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l--------~~l~~p~~~~L~~~~~~~~~~~~~~~~~~ 649 (707)
+.+...+..+ .+..+.....|+..+.+.. ...+ .+++.++++.+.++.... ....
T Consensus 543 ~~L~~~l~~~-----~~~v~~~A~~al~~l~~~c-----~~~l~~~~~~e~~p~~~~il~~l~~~~~~l-------~~~~ 605 (1023)
T 4hat_C 543 LKLFEFMHET-----HEGVQDMACDTFIKIVQKC-----KYHFVIQQPRESEPFIQTIIRDIQKTTADL-------QPQQ 605 (1023)
T ss_dssp HHHHHHTTCS-----CHHHHHHHHHHHHHHHHHH-----THHHHSCCTTCSSCHHHHHHHTHHHHHTTS-------CHHH
T ss_pred HHHHHHhhcC-----CHHHHHHHHHHHHHHHHHH-----HHHhhccCCCCCchhHHHHHHHHHHHHHhC-------CHHH
Confidence 7766654321 1334555666666666542 2223 235666676777766532 1234
Q ss_pred hhHHHHHHHHHhhhcCCcccHHHHHHHHhHHHHHHH
Q 005232 650 LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIF 685 (707)
Q Consensus 650 ~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l~~i~ 685 (707)
.....+.++.+++.+.........++.++|.+....
T Consensus 606 ~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~ 641 (1023)
T 4hat_C 606 VHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAW 641 (1023)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHH
Confidence 456779999999987432223445555555444333
No 66
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.90 E-value=3.2 Score=49.41 Aligned_cols=159 Identities=8% Similarity=0.034 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccC-----CCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Q 005232 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-----TSE-DTAAAAALAFRHICDDCRKKLCGYLDGLY 577 (707)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~-----~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~ 577 (707)
.+++-+.+++..+|+.++-+....+ ..+++.+++++..... +++ .++..++.++.++++-.+.+ ..+++.++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e-~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTE-KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhh-HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 4688999999999988753322100 1268888888765221 122 24445778888888765543 24566666
Q ss_pred HHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH--------HhhhhhHHHHHHHHhcCCCcccccCchh
Q 005232 578 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE--------MLCLPVVTPLQEIINQGPEILQKKHPRD 649 (707)
Q Consensus 578 ~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~--------~l~~p~~~~L~~~~~~~~~~~~~~~~~~ 649 (707)
+.+...+.. -+...+.....++.+++...+ ..+. +++.++++.+.+++.... ...
T Consensus 543 ~~ll~~l~~-----~~~~V~~~A~~al~~l~~~~~-----~~l~~~~~~~~~p~~~~il~~l~~~~~~~~-------~~~ 605 (1049)
T 3m1i_C 543 LKLFEFMHE-----THEGVQDMACDTFIKIVQKCK-----YHFVIQQPRESEPFIQTIIRDIQKTTADLQ-------PQQ 605 (1049)
T ss_dssp HHHHHHTTS-----SCHHHHHHHHHHHHHHHHHHT-----HHHHSCCTTCSSCHHHHHHHTHHHHHTTSC-------HHH
T ss_pred HHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHH-----HHhhcccCCCCCcHHHHHHHHHHHHHHhCC-------HHH
Confidence 666655432 135667777778877777532 3332 667778877877776532 123
Q ss_pred hhHHHHHHHHHhhhcCCcccHHHHHHHHhHHH
Q 005232 650 LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIF 681 (707)
Q Consensus 650 ~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l 681 (707)
....++.++.++.....++-...+++.++|.+
T Consensus 606 ~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~ 637 (1049)
T 3m1i_C 606 VHTFYKACGIIISEERSVAERNRLLSDLMQLP 637 (1049)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44567888888887642233455666666653
No 67
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=87.40 E-value=39 Score=37.36 Aligned_cols=257 Identities=12% Similarity=0.073 Sum_probs=131.4
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChhhH
Q 005232 11 LNALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAV 80 (707)
Q Consensus 11 l~~ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~~~ 80 (707)
+..+..++|+..|..|-..|.++-+.+ ++......+|.+ +.+.+++..|+.+|++.... ++.+
T Consensus 19 Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~------~~~~ 91 (644)
T 2z6h_A 19 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH------REGL 91 (644)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTS------HHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcC------hhhH
Confidence 344446789999999999999876543 344445566654 45788999999999964332 2233
Q ss_pred HHH-HHHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhccccc--cCCccchHHHHHhcCCCCC-chhHHHHHhccchhhc
Q 005232 81 RGL-QDSLNTLLKKF-HKGPPKVRTQISIAVAALAVHISAED--WGGGGIVNWLRDEMNSHPE-FVPGFLELLTVLPEEV 155 (707)
Q Consensus 81 ~~l-r~~Ll~~l~~~-~~~~~~v~~qL~~ala~l~~~~~~~~--W~~~~~i~~l~~~~~~~~~-~~~~~L~~L~~L~EE~ 155 (707)
..+ +...+..+... ......++..-+.+|..++....... .-+.+.++.+++.+.+... .....+..|..+...
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~- 170 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG- 170 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc-
Confidence 322 22344444443 23457788888889988876532100 0011367777777765421 122334445444321
Q ss_pred ccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCCC--
Q 005232 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE-- 233 (707)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~~-- 233 (707)
....|..+.+. ...+.+++++...- .+.....+++++..-... .. ....+.....++.+...+.++
T Consensus 171 -------~~~~~~~i~~~--g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~-~~-~~~~l~~~g~l~~L~~ll~~~~~ 238 (644)
T 2z6h_A 171 -------NQESKLIILAS--GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC-SS-NKPAIVEAGGMQALGLHLTDPSQ 238 (644)
T ss_dssp -------CHHHHHHHHHT--THHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTC-TT-HHHHHHHTTHHHHHHTTTTCSCH
T ss_pred -------CcHHHHHHHHc--CChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcC-cc-cHHHHHHCCCHHHHHHHHhcCCH
Confidence 01122222111 12233344433221 123444555554432210 00 001122345677778888754
Q ss_pred ccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhh
Q 005232 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (707)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e 301 (707)
++...++.+|..+...... ..... .+++.++.+ + . ..|.+.....+..+..++.
T Consensus 239 ~~~~~a~~~L~nL~~~~~~-----~~~~~----~~i~~Lv~l---L-~-~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 239 RLVQNCLWTLRNLSDAATK-----QEGME----GLLGTLVQL---L-G-SDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHHHHHHHHGGGCTT-----CCSCH----HHHHHHHHH---T-T-CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcchh-----hhhhh----hHHHHHHHH---H-c-CCCHHHHHHHHHHHHHHHc
Confidence 4567788888888654321 11111 223333221 1 1 3455555566677766654
No 68
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=86.23 E-value=45 Score=36.86 Aligned_cols=135 Identities=15% Similarity=0.116 Sum_probs=83.4
Q ss_pred CcchhhHHHHHHHHhhccCCcc----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHH
Q 005232 466 EWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (707)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~ 541 (707)
....+++++.++..++..-... +...++.+++.+.. .++.++..++.+++.++..-.. .. ....+++.++
T Consensus 196 ~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~-~~---~~~~~i~~Lv 269 (644)
T 2z6h_A 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATK-QE---GMEGLLGTLV 269 (644)
T ss_dssp CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC--SCHHHHHHHHHHHHHHGGGCTT-CC---SCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcchh-hh---hhhhHHHHHH
Confidence 3455678888888888532211 12235555555433 3688999999999998754322 22 4557777777
Q ss_pred hccCCCh-HHHHHHHHHHHHHHHH---hhhhhc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCCh
Q 005232 542 SGMSTSE-DTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (707)
Q Consensus 542 ~~l~~~~-~v~~~Aa~al~~l~~~---c~~~l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (707)
+.+.++. .++..|+.+|.+++.. .+..+. .-++.++..+..- + -..+.+...+.+++++...-+.
T Consensus 270 ~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~---~----~~~~v~~~a~~aL~nL~~~~~~ 340 (644)
T 2z6h_A 270 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---G----DREDITEPAICALRHLTSRHQE 340 (644)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH---T----TCHHHHHHHHHHHHHHTSSSTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc---C----CcHHHHHHHHHHHHHHhcCCch
Confidence 7776543 4899999999999863 233332 2244444444321 0 1146678888899888765453
No 69
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=85.30 E-value=21 Score=40.73 Aligned_cols=97 Identities=5% Similarity=0.019 Sum_probs=61.3
Q ss_pred CCCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc----h-hH
Q 005232 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP----S-IL 533 (707)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~----~-~l 533 (707)
..+|.-++.++.+++.++..-... +...++.+++.+..-+....++..++.++|..+. .+++.. . .-
T Consensus 410 ~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~---~~~~~~~~~~~v~~ 486 (780)
T 2z6g_A 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS---RHQDAEMAQNAVRL 486 (780)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS---SSTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh---cCchHHHHHHHHHH
Confidence 467888999999999998763221 1234667776664322235899999999998863 122200 0 01
Q ss_pred HHHHHHHHhccCCCh--HHHHHHHHHHHHHHH
Q 005232 534 ASVLSILTSGMSTSE--DTAAAAALAFRHICD 563 (707)
Q Consensus 534 ~~~l~~l~~~l~~~~--~v~~~Aa~al~~l~~ 563 (707)
...++.|++.+.++. .++..|+.+|.+++.
T Consensus 487 ~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 123445555555432 489999999999984
No 70
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=81.32 E-value=32 Score=31.41 Aligned_cols=157 Identities=11% Similarity=0.161 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-----CCChHHHHHHHHHHHHhhHH
Q 005232 447 KILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-----LPQQPQLLQTVCLTIGAYSK 521 (707)
Q Consensus 447 ~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-----l~~~~~l~~t~~~~ig~~~~ 521 (707)
+..++.+.+.+. + ..+++++..++. ++.-...+|-+++++.+ +. +..+..+.+.++.+
T Consensus 10 q~yf~~It~a~~------~--~~r~~aL~sL~~-----D~gL~~LlPyf~~fI~~~v~~nl~-~l~~L~~lm~~~~A--- 72 (196)
T 4atg_A 10 QLYFDKILSMIK------S--DMKDIAIECLEK-----ESGLQQLVPYFIQHISELILKSFK-EAEVLKTCIALYFS--- 72 (196)
T ss_dssp HHHHHHHHHHHT------S--TTHHHHHHHHHH-----CSSCTTTHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHH------h--HHHHHHHHHHhc-----CCChhhhHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHH---
Confidence 344566666542 1 335777777664 22235678888876542 32 45555555665554
Q ss_pred HHhhCCCC------chhHHHHHHHHHh-ccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCCh
Q 005232 522 WFDAASSD------PSILASVLSILTS-GMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSA 594 (707)
Q Consensus 522 ~l~~~p~~------~~~l~~~l~~l~~-~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~ 594 (707)
+-.||.. .+++|+++..++. .+. +..++..||..+..+|..+.+.-..--+-+...+...+..+ .-+.
T Consensus 73 -Ll~N~~l~lepYlH~LipsvLtCll~k~l~-~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp---~~~l 147 (196)
T 4atg_A 73 -LIKNKHVFIDPYLHQILPSLLTCVIGKSIV-DDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDP---NRSE 147 (196)
T ss_dssp -HHHCTTCCCGGGHHHHHHHHHHHHHCTTCC-CHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCT---TSCH
T ss_pred -HHcCCCCChHHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCC---CCCh
Confidence 3455553 2456666665543 222 22499999999999999988655444556777777766543 2344
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHH
Q 005232 595 EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQE 633 (707)
Q Consensus 595 ~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~ 633 (707)
......+.|++ ++++ +.+..++-|-+..+.+
T Consensus 148 ~t~YGAi~GL~----~lG~----~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 148 DSQYGALYCLS----ILSK----NVVNTVIREHAEEYKR 178 (196)
T ss_dssp HHHHHHHHHHH----HHCH----HHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HhHH----HHHHHhhhcCHHHHHH
Confidence 45555555543 3332 3444555455544443
No 71
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=77.13 E-value=47 Score=33.62 Aligned_cols=219 Identities=9% Similarity=0.021 Sum_probs=116.1
Q ss_pred chhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcC-------CCC--ChHHHHHHHHHHHHhhHHHHhhCCCCchh-
Q 005232 468 RPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLP-------KLP--QQPQLLQTVCLTIGAYSKWFDAASSDPSI- 532 (707)
Q Consensus 468 ~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~-------~l~--~~~~l~~t~~~~ig~~~~~l~~~p~~~~~- 532 (707)
..+..++.++..++.. ++. +...++.++++|. ... .++.++..+++++...+.--..+.. ..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~--~i~ 123 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA--TLC 123 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH--HHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH--HHH
Confidence 4566888888888865 221 1234566666652 111 2578999999999887631111111 11
Q ss_pred -HHHHHHHHHhccCCCh-HHHHHHHHHHHHHHH----Hhhhhhc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHH
Q 005232 533 -LASVLSILTSGMSTSE-DTAAAAALAFRHICD----DCRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEAL 604 (707)
Q Consensus 533 -l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~----~c~~~l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai 604 (707)
...+++.|++.+.++. +++..|+.+|++++. +++..+. .-++.|+..+.. . -+.+.+.....++
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~---~-----~~~~~~~~A~~aL 195 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE---V-----KKESTLKSVLSAL 195 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH---C-----CCHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhc---C-----CCHHHHHHHHHHH
Confidence 2456777777776542 599999999999985 2444444 335556655432 1 1345666777777
Q ss_pred HHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHH-HHhHHHHH
Q 005232 605 SMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKA 683 (707)
Q Consensus 605 ~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~-~~~p~l~~ 683 (707)
..+...- ++. +..+. .....+..|-+++....+...-......+..+..++..+.. .++-...+.+ ..+|.|-+
T Consensus 196 ~nLs~~~-~~n-k~~i~-~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~--~~~~~~~i~~~g~i~~Lv~ 270 (354)
T 3nmw_A 196 WNLSAHC-TEN-KADIC-AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT--NEDHRQILRENNCLQTLLQ 270 (354)
T ss_dssp HHHHTTC-HHH-HHHHH-HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHTTTHHHHHHH
T ss_pred HHHHccC-hhh-hHHHH-HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC--CHHHHHHHHHcCCHHHHHH
Confidence 7766532 222 21111 12344555555555432110000112222334444432111 1222222222 35677777
Q ss_pred HHHhhcCchhHHHHHHHHHhh
Q 005232 684 IFDIRAWDMRTMESLCRACKY 704 (707)
Q Consensus 684 i~~~~~~~~~v~e~~c~~~~~ 704 (707)
++.. ++.++.+.+|.++..
T Consensus 271 lL~~--~~~~v~~~A~~aL~n 289 (354)
T 3nmw_A 271 HLKS--HSLTIVSNACGTLWN 289 (354)
T ss_dssp HTTC--SCHHHHHHHHHHHHH
T ss_pred HHcC--CChHHHHHHHHHHHH
Confidence 7664 566788888877764
No 72
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=74.66 E-value=1.2e+02 Score=34.39 Aligned_cols=259 Identities=10% Similarity=0.095 Sum_probs=132.7
Q ss_pred hhhHHHHHHhhcC--hHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccc--cccHHHHHhh-cCCCC
Q 005232 429 VADVLIDAASVLG--GDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE--AEVMPQVMAL-LPKLP 503 (707)
Q Consensus 429 ~~d~l~~~~~~l~--~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~--~~~l~~l~~~-l~~l~ 503 (707)
...+++.++.+-+ ++.+++.+.+.+...+.. .- ...-.+.-++|.++..++..+.... ...+..++.. |+.+.
T Consensus 359 ~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~-~~-l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID 436 (799)
T 1vsy_4 359 YISCFAYLLELDPSNAYLIYDKILIDLYDTLAD-QF-INSRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKLD 436 (799)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTT-TT-TTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCccceehHHHHHHHHHHhcc-cc-ccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccCC
Confidence 4456666655433 266777776666555421 00 1233457889999998887765432 2344444443 45554
Q ss_pred -ChHHHHHHHHHHHHhhHHHHh----------------------hC----------------CC------------Cc--
Q 005232 504 -QQPQLLQTVCLTIGAYSKWFD----------------------AA----------------SS------------DP-- 530 (707)
Q Consensus 504 -~~~~l~~t~~~~ig~~~~~l~----------------------~~----------------p~------------~~-- 530 (707)
.++.-...++.+++..+.++. .| .+ ..
T Consensus 437 ~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~ 516 (799)
T 1vsy_4 437 MNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSM 516 (799)
T ss_dssp SSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHH
Confidence 345444555555544433222 11 00 00
Q ss_pred --hhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHH----HHHH
Q 005232 531 --SILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL----VEAL 604 (707)
Q Consensus 531 --~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l----~eai 604 (707)
+++..++.++-.+. .+.+...-..++..++..|.+.+. +..++.+.+...+..... ..+....+ +.|+
T Consensus 517 v~~f~drvf~llen~~--Ee~l~~~l~~~~~~l~~~lS~~if---~~~l~k~~~fv~~n~~~~-a~~~v~~L~~~~~~a~ 590 (799)
T 1vsy_4 517 LKVYVEKIFQLVDVDL--EDSLVTKINQTTMILQESMDDKIF---NYFASLLNRNFWSNDSFK-EKDPNYELVTIPLAAL 590 (799)
T ss_dssp HHHHHHHHHHHTTSCC--CTHHHHHHHHHHHHHHHTBCHHHH---HHHHHHHHHHHHSCSCCC-SSSCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHH
Confidence 13444444433221 122444455566777777766553 333333333332211001 11122223 4444
Q ss_pred HHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCc--cc-cc--CchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhH
Q 005232 605 SMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEI--LQ-KK--HPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWP 679 (707)
Q Consensus 605 ~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~--~~-~~--~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p 679 (707)
+++ - ++ . +..++..+..++..-+..+... .. +. .-..+...+..++.++|..+ .-+++.-.++..
T Consensus 591 ~~~---~-P~-~---~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g--~~lL~y~deL~~ 660 (799)
T 1vsy_4 591 VRR---N-NG-L---SKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCH--ESLLEYSDELIT 660 (799)
T ss_dssp HHH---C-GG-G---HHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTG--GGGGTTHHHHHH
T ss_pred HHh---C-HH-H---HHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCc--HHHHccHHHHHH
Confidence 433 2 33 2 5566666777777555433111 01 11 12345678899999999642 336677888999
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHhhhh
Q 005232 680 IFKAIFDIRAWDMRTMESLCRACKYAV 706 (707)
Q Consensus 680 ~l~~i~~~~~~~~~v~e~~c~~~~~~~ 706 (707)
+++.++++. .+..+...+|.++++.+
T Consensus 661 il~~~~~~~-k~~~~~~~~~~ll~~lL 686 (799)
T 1vsy_4 661 FMKYLYDNV-TNPPLDVITSIVIHSAL 686 (799)
T ss_dssp HHHHHHHSC-CCHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHh-cCcchHHHHHHHHHHHH
Confidence 999887743 34455677888887765
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=73.50 E-value=68 Score=33.63 Aligned_cols=125 Identities=13% Similarity=0.066 Sum_probs=75.9
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc--hhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHH---Hh
Q 005232 492 MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP--SILASVLSILTSGMSTSE-DTAAAAALAFRHICD---DC 565 (707)
Q Consensus 492 l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~--~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~---~c 565 (707)
+|.++..|.+ .++.++..++..++.++. .++... -.-...++.|++.+.++. .++..|+.+|++++. +.
T Consensus 4 l~~lv~~L~s--~~~~~q~~A~~~L~~l~~---~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 4 IPKAVQYLSS--QDEKYQAIGAYYIQHTCF---QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp HHHHHHHHHS--SCTHHHHHHHHHHHHHTS---SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHHc---CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 5667776654 256788899999988762 333211 011234555666665542 489999999999994 45
Q ss_pred hhhhc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHH
Q 005232 566 RKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPL 631 (707)
Q Consensus 566 ~~~l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L 631 (707)
+..+. .-++.|+..+.. . -+.+.+.....+++.+... +..+. ..+...+.+++.-|
T Consensus 79 k~~i~~~G~i~~Lv~lL~~---~-----~~~~~~~~a~~aL~nLa~~-~~~~~-~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRR---T-----GNAEIQKQLTGLLWNLSST-DELKE-ELIADALPVLADRV 136 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTT---C-----CCHHHHHHHHHHHHHHHTS-SSTHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhh---C-----CCHHHHHHHHHHHHHHhcC-HHhHH-HHHhccHHHHHHHH
Confidence 55554 557777766531 1 2366788889999988877 33222 22224455555444
No 74
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=72.53 E-value=1e+02 Score=32.57 Aligned_cols=135 Identities=15% Similarity=0.116 Sum_probs=83.4
Q ss_pred CcchhhHHHHHHHHhhccCCcc----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHH
Q 005232 466 EWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (707)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~ 541 (707)
+....++++.++..++..-... +...++.+++.+.. .++.++..++++++.++..... .. ....+++.++
T Consensus 199 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~-~~---~~~~~i~~L~ 272 (529)
T 1jdh_A 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATK-QE---GMEGLLGTLV 272 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS--SCHHHHHHHHHHHHHHHTTCTT-CS---CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC--CChHHHHHHHHHHHHHhcCChh-hH---HHHhHHHHHH
Confidence 4556778888888887532111 12345555554432 3688999999999998865322 22 3456677777
Q ss_pred hccCCCh-HHHHHHHHHHHHHHHH---hhhhhc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCCh
Q 005232 542 SGMSTSE-DTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (707)
Q Consensus 542 ~~l~~~~-~v~~~Aa~al~~l~~~---c~~~l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (707)
+.+.++. +++..|+.++.+++.. .+..+. .-++.+++.+..- + -+.+.+...+.+++.+...-|.
T Consensus 273 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~---~----~~~~v~~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 273 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---G----DREDITEPAICALRHLTSRHQE 343 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH---T----TCHHHHHHHHHHHHHHTSSSTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc---C----CHHHHHHHHHHHHHHHHcCCch
Confidence 7665542 4899999999999863 333333 2244455444321 0 1246678888999988766554
No 75
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=70.51 E-value=64 Score=29.42 Aligned_cols=132 Identities=8% Similarity=0.049 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCcccccc----HHHHHhhcC--CCCChHHHHHHHHH
Q 005232 441 GGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEV----MPQVMALLP--KLPQQPQLLQTVCL 514 (707)
Q Consensus 441 ~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~----l~~l~~~l~--~l~~~~~l~~t~~~ 514 (707)
|-..+++++.+.+.+.+... ..++..+...+..+.++..+-.-.-+++ +|.++..+. ++... .+|.-+..
T Consensus 37 gL~~LlPyf~~fI~~~v~~n---l~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~ 112 (196)
T 4atg_A 37 GLQQLVPYFIQHISELILKS---FKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSAD 112 (196)
T ss_dssp SCTTTHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHH
Confidence 33457777777776655322 3467777778888888776644333444 455555443 35434 89999999
Q ss_pred HHHhhHHHHhh-CCCCchhHHHHHHHHHhccCCCh---HHHHHHHHHHHHHHHHhhh-hhcCCHHHHHHH
Q 005232 515 TIGAYSKWFDA-ASSDPSILASVLSILTSGMSTSE---DTAAAAALAFRHICDDCRK-KLCGYLDGLYNV 579 (707)
Q Consensus 515 ~ig~~~~~l~~-~p~~~~~l~~~l~~l~~~l~~~~---~v~~~Aa~al~~l~~~c~~-~l~~~~~~l~~~ 579 (707)
+++..+.-+.. +|. +-+.+...+.+.+.+|. ...--|-.++..+-.+.-. .+.|+++.+.+.
T Consensus 113 lL~~I~~~~~~~y~~---L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 113 IVKYIYDTYSRSYKT---LAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREHAEEYKRT 179 (196)
T ss_dssp HHHHHHHHHTTTSTT---HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCch---HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHH
Confidence 99999886654 354 78888898888887764 3444555666665554433 344766655543
No 76
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=69.98 E-value=19 Score=34.94 Aligned_cols=183 Identities=7% Similarity=0.106 Sum_probs=98.2
Q ss_pred CCCcchhhHHHHHHHHhhccCCccc--ccc---HHHHHhhcCC-C-CChHHHHHHHHHHHHhhHHHHhhCCCC----chh
Q 005232 464 HNEWRPAEAALFCIRAISTYVSVVE--AEV---MPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSD----PSI 532 (707)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~--~~~---l~~l~~~l~~-l-~~~~~l~~t~~~~ig~~~~~l~~~p~~----~~~ 532 (707)
+.+|..+..++-.+..+.+...... ++. +..+...+.. + ..+..+...++.++..+...+...... ..+
T Consensus 20 sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~ 99 (278)
T 4ffb_C 20 YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITL 99 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHH
Confidence 5789999988888877665543221 111 1111111111 1 358999999999998876544321110 124
Q ss_pred HHHHHHHHHh-ccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 533 LASVLSILTS-GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 533 l~~~l~~l~~-~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
...+++.++. ++.+++ .++..|..++..+++.+. ....+++.+...+.. -++..+...+..+..++..
T Consensus 100 ~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~-----Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 100 ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEK-----KLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGC-----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHH
Confidence 5677777664 576654 366677777777776443 223344444443332 2466778888888887776
Q ss_pred CChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcC
Q 005232 611 LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (707)
Q Consensus 611 ~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 665 (707)
.+..... ....+.+++..+..++...++ ..+. ..++.+..+.+.++
T Consensus 170 fg~~~~~--~k~~l~~i~~~l~k~l~d~~~-----~VR~--aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 170 FGLTNVN--VQTFLPELLKHVPQLAGHGDR-----NVRS--QTMNLIVEIYKVTG 215 (278)
T ss_dssp HTTTTCC--HHHHHHHHGGGHHHHHTCSSH-----HHHH--HHHHHHHHHHTC--
T ss_pred hCCCcCC--chhHHHHHHHHHHHHHhCCcH-----HHHH--HHHHHHHHHHHHhC
Confidence 4322110 122333444445555654332 2222 46777888888775
No 77
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=66.57 E-value=45 Score=35.83 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=66.5
Q ss_pred chhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC
Q 005232 468 RPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (707)
Q Consensus 468 ~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~ 547 (707)
.-+|+|-.+++++ ..++++ ...+.+++..+. .....+|..++.-+.=+.+.+. -++.+++.++.||.++
T Consensus 243 PVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~--~~~WEVRHGGLLGLKYL~DLL~-------~Ld~Vv~aVL~GL~D~ 311 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLD--SGDWQVQFSGLIALGYLKEFVE-------DKDGLCRKLVSLLSSP 311 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGG--CSCHHHHHHHHHHHHHTGGGCC-------CHHHHHHHHHHHTTCS
T ss_pred ehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcC--CCCeeehhhhHHHHHHHHHHHH-------HHHHHHHHHHhhcCCc
Confidence 4468888999988 666655 233444442211 1247788888777763322221 2799999999999887
Q ss_pred h-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhc
Q 005232 548 E-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (707)
Q Consensus 548 ~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~ 586 (707)
. +|+..||.+|.-++ ....++.+++.+=+.+..
T Consensus 312 DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~ 345 (800)
T 3oc3_A 312 DEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIES 345 (800)
T ss_dssp SHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhh
Confidence 5 69999999988776 223466666666555554
No 78
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.02 E-value=1.4e+02 Score=34.54 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=71.2
Q ss_pred hhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-
Q 005232 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE- 548 (707)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~- 548 (707)
+.+++.+++-|+-+= .+.++.+++++.+- .+|.+|+.+...+|..+ ..+|. +.++..|....+++.
T Consensus 595 RraAViaLGlI~~g~----~e~v~rlv~~L~~~-~d~~VR~gAalALGli~---aGn~~-----~~aid~L~~L~~D~d~ 661 (963)
T 4ady_A 595 RRAAVIALGFVLLRD----YTTVPRIVQLLSKS-HNAHVRCGTAFALGIAC---AGKGL-----QSAIDVLDPLTKDPVD 661 (963)
T ss_dssp HHHHHHHHHHHTSSS----CSSHHHHTTTGGGC-SCHHHHHHHHHHHHHHT---SSSCC-----HHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHhhccCC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhc---cCCCc-----HHHHHHHHHHccCCCH
Confidence 356677766654331 24678888776653 36999999999999865 33442 566666655566654
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh
Q 005232 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (707)
Q Consensus 549 ~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~ 585 (707)
.|+..|+.|+..+-...-....|.+.+++..+.....
T Consensus 662 ~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 662 FVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 5899999999988776666666778877777766654
No 79
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=63.70 E-value=1.5e+02 Score=31.18 Aligned_cols=258 Identities=12% Similarity=0.076 Sum_probs=132.0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhhcCCCChhHHHHHHHHHHhhhhcCCCCCChh
Q 005232 9 EALNALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSE 78 (707)
Q Consensus 9 ~al~~ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~LL~~~~~~~~v~~faa~~L~~ki~~~w~~l~~~ 78 (707)
..+..+..++|+..|..|-..|..+-..+ ++......+|.+ +.+.+++..|+..|++.... ++
T Consensus 20 ~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~------~~ 92 (529)
T 1jdh_A 20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH------RE 92 (529)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTS------HH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcC------ch
Confidence 34445556889999999999998876543 445555666654 45778999999999985332 22
Q ss_pred hHHHH-HHHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhccccccC---CccchHHHHHhcCCCC-CchhHHHHHhccch
Q 005232 79 AVRGL-QDSLNTLLKKF-HKGPPKVRTQISIAVAALAVHISAEDWG---GGGIVNWLRDEMNSHP-EFVPGFLELLTVLP 152 (707)
Q Consensus 79 ~~~~l-r~~Ll~~l~~~-~~~~~~v~~qL~~ala~l~~~~~~~~W~---~~~~i~~l~~~~~~~~-~~~~~~L~~L~~L~ 152 (707)
.+..+ +...+..+... ..+.+.++...+.+|..++..... ... +.+.++.+++.+.+.. .........|..+.
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33322 22344444443 234567888888888888765321 110 1135677777776532 11223333444332
Q ss_pred hhcccccccCChHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCCcccccchhHHHHHhcCCC
Q 005232 153 EEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS 232 (707)
Q Consensus 153 EE~~~~~~~~~~~~r~~~~~~l~~~~~~Vl~~l~~~l~~~~~~~~~l~~l~sWi~~~~~~~~~~~~~~~ll~~~~~~L~~ 232 (707)
.. .+..|..+.+. ...+.+++++...- .......+.+++...... .. ....+.....++.+...+.+
T Consensus 172 ~~--------~~~~~~~i~~~--~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~-~~-~~~~~~~~g~~~~L~~ll~~ 238 (529)
T 1jdh_A 172 YG--------NQESKLIILAS--GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC-SS-NKPAIVEAGGMQALGLHLTD 238 (529)
T ss_dssp TT--------CHHHHHHHHHT--THHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTS-TT-HHHHHHHTTHHHHHHTTTTS
T ss_pred hC--------CHHHHHHHHHC--CCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcC-cc-cHHHHHHCCCHHHHHHHHhC
Confidence 21 01122222111 12344444444321 123344455554432221 00 00112234567778888875
Q ss_pred C--ccHHHHHHHHHHHHhhhccCCCCCCCCcHhHHHHHHHhHhhhHHHhccCCCCHHHHHHHHHHHHHHhh
Q 005232 233 E--ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (707)
Q Consensus 233 ~--~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~l~~~~~d~~~~~~l~~l~~~l~e 301 (707)
+ ++...++.+|..+...... .... ..+++.++.+ + ...|.+.....+..+..++.
T Consensus 239 ~~~~~~~~a~~~L~~l~~~~~~-----~~~~----~~~i~~L~~l---l--~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 239 PSQRLVQNCLWTLRNLSDAATK-----QEGM----EGLLGTLVQL---L--GSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTTCTT-----CSCC----HHHHHHHHHH---T--TCSCHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHhcCChh-----hHHH----HhHHHHHHHH---H--cCCCHHHHHHHHHHHHHHhc
Confidence 4 4567777888777654321 1111 2233333322 1 23455555566677776654
No 80
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.04 E-value=65 Score=28.92 Aligned_cols=56 Identities=21% Similarity=0.071 Sum_probs=43.1
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhh
Q 005232 9 EALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSK 67 (707)
Q Consensus 9 ~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~k 67 (707)
..+..+...+|+..|..|-..|..+. .+++......++.+ .+..||..|+..|...
T Consensus 79 ~~L~~~l~d~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 79 EPLIKALKDEDGWVRQSAAVALGQIG-DERAVEPLIKALKD--EDWFVRIAAAFALGEI 134 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHcC--CCHHHHHHHHHHHHHh
Confidence 34444557789999999999999886 56677777778864 4678999999998764
No 81
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=54.23 E-value=1.3e+02 Score=27.32 Aligned_cols=126 Identities=14% Similarity=0.117 Sum_probs=75.3
Q ss_pred cchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC
Q 005232 467 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 546 (707)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~ 546 (707)
-+-+=-.-|++..|+..-+.--......++.++. +.+..=+.+++.+||.+++ +++ +|..+.|+-++..+.+
T Consensus 121 ~kikIn~~yaLeeIaranP~l~~~v~rdi~smlt--skd~~Dkl~aLnFi~alGe---n~~---~yv~PfLprL~aLL~D 192 (253)
T 2db0_A 121 EKTKINVSYALEEIAKANPMLMASIVRDFMSMLS--SKNREDKLTALNFIEAMGE---NSF---KYVNPFLPRIINLLHD 192 (253)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTS--CSSHHHHHHHHHHHHTCCT---TTH---HHHGGGHHHHHGGGGC
T ss_pred ccceecHHHHHHHHHHhChHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhc---cCc---cccCcchHHHHHHHcC
Confidence 3434445567776665544321122233333443 2356678899999998874 344 3777777777777776
Q ss_pred Ch-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 547 SE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 547 ~~-~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
.. .|+.+|..++.+++....+ +-+- +...+..+ + .-+...+..+.+|++.++-.
T Consensus 193 ~deiVRaSaVEtL~~lA~~npk-lRki---i~~kl~e~-~-----D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 193 GDEIVRASAVEALVHLATLNDK-LRKV---VIKRLEEL-N-----DTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTSCHH-HHHH---HHHHHHHC-C-----CSCHHHHHHHHHHHHHHHHC
T ss_pred cchhhhHHHHHHHHHHHHcCHH-HHHH---HHHHHHHh-c-----CcHHHHHHHHHHHHHHHHHH
Confidence 54 5888999999998865433 2221 22333332 1 13466788888999887644
No 82
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=52.79 E-value=1.2e+02 Score=30.46 Aligned_cols=142 Identities=11% Similarity=0.126 Sum_probs=80.2
Q ss_pred CCcchhhHHHHHHHHhhccCCcc------ccccHHHHHhhcCCCCC--hHHHHHHHHHHHHhhHHHHhhCCCCchhH--H
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQ--QPQLLQTVCLTIGAYSKWFDAASSDPSIL--A 534 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~------~~~~l~~l~~~l~~l~~--~~~l~~t~~~~ig~~~~~l~~~p~~~~~l--~ 534 (707)
.+..-.+.++.++..++...++. ....++.+++.|..-.. ...++..++.++...+.++..+++..+.+ .
T Consensus 183 ~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 262 (354)
T 3nmw_A 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262 (354)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc
Confidence 34566788888888887643221 13456777777654221 12577778888877775443333311010 1
Q ss_pred HHHHHHHhccCCCh-HHHHHHHHHHHHHHH---HhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 535 SVLSILTSGMSTSE-DTAAAAALAFRHICD---DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 535 ~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~---~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
.+++.|+..+.++. .++..|+.++.+++. +.+..+... ..+..+.+++..+ +...+.....++..+...
T Consensus 263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv~LL~s~-----~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHSK-----HKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT--THHHHHHTTTTCS-----SHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcC
Confidence 23455555555543 489999999999984 233333311 1223333344331 355677778888887777
Q ss_pred CCh
Q 005232 611 LPQ 613 (707)
Q Consensus 611 ~p~ 613 (707)
-|.
T Consensus 336 ~~~ 338 (354)
T 3nmw_A 336 RPA 338 (354)
T ss_dssp CCG
T ss_pred CHH
Confidence 553
No 83
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=52.53 E-value=1.6e+02 Score=30.86 Aligned_cols=183 Identities=9% Similarity=0.029 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchh--HHHHHHHHHhccCCC-hHHHHHHHHHHHHHHH----Hhhhhhc--CCHHH
Q 005232 505 QPQLLQTVCLTIGAYSKWFDAASSDPSI--LASVLSILTSGMSTS-EDTAAAAALAFRHICD----DCRKKLC--GYLDG 575 (707)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~p~~~~~--l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~----~c~~~l~--~~~~~ 575 (707)
++.++..++++++.++.--..++. .+ ...+++.|+..|.++ .+++..|+.||++++. +++..+. .-++.
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~~~k~--~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~ 290 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDVANKA--TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 290 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHH--HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcccHH--HHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHH
Confidence 577899999999887631111111 11 245677777777654 2599999999999985 2444444 23455
Q ss_pred HHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHH
Q 005232 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID 655 (707)
Q Consensus 576 l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~ 655 (707)
|++.+. .. -+.+.+.....++..+...-+ +. +..+. .....+..|-+++........-......+..|.
T Consensus 291 LV~lLl---~s-----~~~~v~~~A~~aL~nLs~~~~-~n-k~~I~-~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~ 359 (458)
T 3nmz_A 291 LMECAL---EV-----KKESTLKSVLSALWNLSAHCT-EN-KADIC-AVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 359 (458)
T ss_dssp HHHHHT---TC-----CSHHHHHHHHHHHHHHHHHCH-HH-HHHHH-HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHH
T ss_pred HHHHHh---cC-----CCHHHHHHHHHHHHHHccCCH-HH-HHHHH-HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 554432 21 134566677777777765221 21 11111 023444445555554321100001122223334
Q ss_pred HHHHHhhhcCCcccHHHHHH-HHhHHHHHHHHhhcCchhHHHHHHHHHhh
Q 005232 656 RFAYIFRYVNHPEAVADAIQ-RLWPIFKAIFDIRAWDMRTMESLCRACKY 704 (707)
Q Consensus 656 ~l~~~~~~~~~~~p~~~~~~-~~~p~l~~i~~~~~~~~~v~e~~c~~~~~ 704 (707)
.++..+.. .++-...+.+ ...|.|-+++.. ++.++.+.+|.++..
T Consensus 360 nLs~~~a~--~~~~~~~i~~~G~i~~Lv~LL~~--~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 360 NVSSLIAT--NEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACGTLWN 405 (458)
T ss_dssp HHHHHHTT--CHHHHHHHHHTTHHHHHHHHSSC--SCHHHHHHHHHHHHH
T ss_pred HHHhcccC--CHHHHHHHHHcccHHHHHHHHcC--CChHHHHHHHHHHHH
Confidence 44432111 1221222222 356766666654 566788888877764
No 84
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=51.90 E-value=1.6e+02 Score=27.67 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=62.1
Q ss_pred cHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchh--HHHHHHHHHhccCCC-hHHHHHHHHHHHHHHH---H
Q 005232 491 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSI--LASVLSILTSGMSTS-EDTAAAAALAFRHICD---D 564 (707)
Q Consensus 491 ~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~--l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~---~ 564 (707)
-+|.+++.|.+-...+.++..+...+...+. .++..... -...++.|++.|..+ .+++..|+.||++++. +
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~---~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECF---QKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHH---HCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHc---CCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 3788888776533334677667677766542 11110001 113345555555444 2599999999999995 3
Q ss_pred hhhhhc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHh
Q 005232 565 CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (707)
Q Consensus 565 c~~~l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (707)
++..+. .-++.|++.+.. . -+.+.+.....++..+..
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~---~-----~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQ---T-----RDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHH---C-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHcc---C-----CCHHHHHHHHHHHHHHHc
Confidence 444454 346666666542 1 135567777767776644
No 85
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=49.42 E-value=53 Score=27.28 Aligned_cols=55 Identities=20% Similarity=0.073 Sum_probs=37.0
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHhh
Q 005232 10 ALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSK 67 (707)
Q Consensus 10 al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~k 67 (707)
.|..+...+|+..|..|-..|.++. .+++......+|.+ .+..||..|+..|.+.
T Consensus 46 ~L~~~L~d~~~~vR~~A~~aL~~~~-~~~a~~~L~~~L~d--~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 46 PLLESLSNEDWRIRGAAAWIIGNFQ-DERAVEPLIKLLED--DSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHGGGC-SHHHHHHHHHHHHH--CCTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHcC--CCHHHHHHHHHHHHHh
Confidence 3444446678888888888777775 45666666666754 4567888888887643
No 86
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=48.64 E-value=95 Score=32.48 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=71.5
Q ss_pred CcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc-hhHHHHHHH
Q 005232 466 EWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLSI 539 (707)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~-~~l~~~l~~ 539 (707)
+-.-.+.+..+++.++..-++. +...+|.++++|..-+ ++.++..++++++..+.. ++.. ..+..+++.
T Consensus 57 ~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~----~~~~~~i~~g~i~~ 131 (457)
T 1xm9_A 57 NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSST----DELKEELIADALPV 131 (457)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS----SSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcC----HHhHHHHHhccHHH
Confidence 3455688899999998742221 2345788888876323 688999999999988753 2221 233456666
Q ss_pred HHhccC--------CC---------hHHHHHHHHHHHHHHHH--hhhhhc---CCHHHHHHHHHH
Q 005232 540 LTSGMS--------TS---------EDTAAAAALAFRHICDD--CRKKLC---GYLDGLYNVYRT 582 (707)
Q Consensus 540 l~~~l~--------~~---------~~v~~~Aa~al~~l~~~--c~~~l~---~~~~~l~~~~~~ 582 (707)
|++.+. ++ ..+...|+.+|.++|.. ++..+. +-++.|+..+..
T Consensus 132 Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 666661 11 13666999999999963 444555 346666666654
No 87
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=48.63 E-value=1.1e+02 Score=35.29 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCCh
Q 005232 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (707)
Q Consensus 550 v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (707)
++..|+.|+..+|... | -..+++.+..+... -+...+...+.|+|.|....+.
T Consensus 628 VR~gAalALGli~aGn-----~-~~~aid~L~~L~~D-----~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 628 VRCGTAFALGIACAGK-----G-LQSAIDVLDPLTKD-----PVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHHHHHHHHTSSS-----C-CHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHHHHHHHHhccCC-----C-cHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHhcCCcc
Confidence 5555555555544211 1 12344444444332 2355666777777777655443
No 88
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=46.98 E-value=81 Score=29.66 Aligned_cols=135 Identities=14% Similarity=0.106 Sum_probs=79.2
Q ss_pred CCcchhhHHHHHHHHhhccCCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~ 539 (707)
.+-.-.+.+..+++.++..-++. +...+|.+++.|.+- .++.++..+..++..++..=...+ ......++.
T Consensus 64 ~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~~~~~k~---~i~~~~i~~ 139 (233)
T 3tt9_A 64 QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQT-RDLETKKQITGLLWNLSSNDKLKN---LMITEALLT 139 (233)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSGGGHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcChhhHH---HHHhccHHH
Confidence 34456788999999998642221 124577888777532 256677777655555543111111 244445555
Q ss_pred HHhcc-------CC----------ChHHHHHHHHHHHHHHH---HhhhhhcC---CHHHHHHHHHHHhhccCCCCCChhh
Q 005232 540 LTSGM-------ST----------SEDTAAAAALAFRHICD---DCRKKLCG---YLDGLYNVYRTAVNGEGSLKVSAED 596 (707)
Q Consensus 540 l~~~l-------~~----------~~~v~~~Aa~al~~l~~---~c~~~l~~---~~~~l~~~~~~~~~~~~~~~l~~~~ 596 (707)
|...+ .+ ...+...|+.+|++++. +.++.|.. -++.|+..+..-...+ +.+...
T Consensus 140 Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~---~~~~k~ 216 (233)
T 3tt9_A 140 LTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADY---QPDDKA 216 (233)
T ss_dssp HCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTT---CTTCHH
T ss_pred HHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcc---cchhHH
Confidence 54322 10 11488999999999974 56777753 3577888777665432 344555
Q ss_pred HHHHHHHHHH
Q 005232 597 SLHLVEALSM 606 (707)
Q Consensus 597 ~~~l~eai~~ 606 (707)
++..+.++-.
T Consensus 217 ~En~v~~L~n 226 (233)
T 3tt9_A 217 TENCVCILHN 226 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=46.54 E-value=23 Score=35.89 Aligned_cols=97 Identities=11% Similarity=0.176 Sum_probs=64.8
Q ss_pred CCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCC-C-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh
Q 005232 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 542 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l-~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~ 542 (707)
.+-..+--+.+.+..+++. + ++.+ -+.+.+.+ + .++|.+|..+++++|+.. .|+ +++.+.+++-+
T Consensus 80 ~d~~lKrLvYLyl~~~~~~-~---~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~-----~~~---m~~~l~~~lk~ 146 (355)
T 3tjz_B 80 NDPTLRRMCYLTIKEMSCI-A---EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQIT-----DST---MLQAIERYMKQ 146 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTT-S---SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHC-----CTT---THHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-H---HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCC-----CHH---HHHHHHHHHHH
Confidence 4455455556666666665 1 1233 23333321 2 247999999999999863 365 89999999999
Q ss_pred ccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHH
Q 005232 543 GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLD 574 (707)
Q Consensus 543 ~l~~~~-~v~~~Aa~al~~l~~~c~~~l~~~~~ 574 (707)
++.+++ .|+..|+.+..+++....+.+..+++
T Consensus 147 ~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~ 179 (355)
T 3tjz_B 147 AIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN 179 (355)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHH
T ss_pred HcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 997754 49999999999888776665544443
No 90
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=46.45 E-value=1.7e+02 Score=26.52 Aligned_cols=118 Identities=11% Similarity=0.074 Sum_probs=76.9
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccccccHHHHHhhcCCCCChHHH
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQL 508 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l 508 (707)
++-++..+...-+ . .+..++.-+.... . +.+=.++=++|-.++++++.-..--.+++|.++..|-. .+-.|
T Consensus 127 ~~yaLeeIaranP-~-l~~~v~rdi~sml----t-skd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D--~deiV 197 (253)
T 2db0_A 127 VSYALEEIAKANP-M-LMASIVRDFMSML----S-SKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHD--GDEIV 197 (253)
T ss_dssp HHHHHHHHHHHCH-H-HHHHHHHHHHHHT----S-CSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGC--SSHHH
T ss_pred HHHHHHHHHHhCh-H-HHHHHHHHHHHHh----c-CCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcC--cchhh
Confidence 6666665554433 2 3333333332221 1 23445566889999999888666567889999987654 26889
Q ss_pred HHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHH
Q 005232 509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHIC 562 (707)
Q Consensus 509 ~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~ 562 (707)
|.++..+++..+. .+| -+..++.-.+.-+.++. .+....-.++.++.
T Consensus 198 RaSaVEtL~~lA~---~np----klRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 198 RASAVEALVHLAT---LND----KLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHHHHT---SCH----HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH---cCH----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 9999999998763 455 37777777777787764 46666666677654
No 91
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=42.72 E-value=1.1e+02 Score=31.98 Aligned_cols=141 Identities=11% Similarity=0.121 Sum_probs=80.6
Q ss_pred CCcchhhHHHHHHHHhhccCCcc------ccccHHHHHhhcCCCCC--hHHHHHHHHHHHHhhHHHHhhCCCCchhH--H
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQ--QPQLLQTVCLTIGAYSKWFDAASSDPSIL--A 534 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~------~~~~l~~l~~~l~~l~~--~~~l~~t~~~~ig~~~~~l~~~p~~~~~l--~ 534 (707)
.+..-.+.++.++..++....+. ....++.+++.|..-.. ...++..++.++...+.++..+++..+.+ .
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence 45566788888888887643221 12456777777654221 12578888888887776544444311111 1
Q ss_pred HHHHHHHhccCCCh-HHHHHHHHHHHHHHH---HhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 535 SVLSILTSGMSTSE-DTAAAAALAFRHICD---DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 535 ~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~---~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
.+++.|+..+.++. .++..|+.++.+++. +.+..+.. ...+..+.+++..+ +...+.....++..+...
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~--~G~I~~Lv~LL~s~-----~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD--MGAVSMLKNLIHSK-----HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHH--HTHHHHHHTTTTCS-----SHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcC
Confidence 23555666665543 589999999999983 33333321 11233333444331 355677777777777766
Q ss_pred CC
Q 005232 611 LP 612 (707)
Q Consensus 611 ~p 612 (707)
-|
T Consensus 452 ~p 453 (458)
T 3nmz_A 452 RP 453 (458)
T ss_dssp CS
T ss_pred CH
Confidence 44
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=40.90 E-value=2.4e+02 Score=26.76 Aligned_cols=135 Identities=10% Similarity=0.032 Sum_probs=78.7
Q ss_pred cchhhHHHHHHHHhhccCCccc------cccHHHHHhhcC-C-CC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHH
Q 005232 467 WRPAEAALFCIRAISTYVSVVE------AEVMPQVMALLP-K-LP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVL 537 (707)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~~~------~~~l~~l~~~l~-~-l~-~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l 537 (707)
-.-.+.++-++..+++.+.... ...+..++..|. . +. ..+.++..++.++-.+.+ ... ....++
T Consensus 69 ~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~---~~~----~~~~~~ 141 (278)
T 4ffb_C 69 VVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG---LDT----SITQSV 141 (278)
T ss_dssp HHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH---TSS----SSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH---hcC----cHHHHH
Confidence 3444555666666665544321 112233333222 1 22 368888888888766543 111 345677
Q ss_pred HHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhc---CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCCh
Q 005232 538 SILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC---GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (707)
Q Consensus 538 ~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~~l~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~ 613 (707)
..+..++.+.. .++..+...+.++......... +.++.++..+...++. -+.+.|...++.++.+-..+++
T Consensus 142 e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d-----~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 142 ELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH-----GDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC-----SSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHhCc
Confidence 88888886642 3778888888888777543322 3455666666666654 3577888888888888777653
No 93
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=38.24 E-value=4.9e+02 Score=29.47 Aligned_cols=254 Identities=10% Similarity=0.023 Sum_probs=130.3
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHhhccCCccc------cccHHHHHhhcCCC
Q 005232 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE------AEVMPQVMALLPKL 502 (707)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~------~~~l~~l~~~l~~l 502 (707)
++=++..+|.-++.|.--+.....+.+++..-.. ..+-...=-+.++++++..+.++.. ...++.++.++.+
T Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s- 301 (810)
T 3now_A 224 ASVCLARIYENMYYDEAKARFTDQIDEYIKDKLL-APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT- 301 (810)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhc-cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC-
Confidence 4446666677676433222222333333211001 1122222233555555555544332 2456677766544
Q ss_pred CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhh-----hhhc-CCHHH
Q 005232 503 PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCR-----KKLC-GYLDG 575 (707)
Q Consensus 503 ~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~c~-----~~l~-~~~~~ 575 (707)
.++.++..+++.+|..+.--...-. ....-++.|...+... ..++..|+.+|.++..... ..+. .-+..
T Consensus 302 -~~~~~q~~A~~al~~aa~~~~~R~~---I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~ 377 (810)
T 3now_A 302 -DDELQQRVACECLIAASSKKDKAKA---LCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK 377 (810)
T ss_dssp -SCHHHHHHHHHHHHHHTTSHHHHHT---THHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHH
T ss_pred -CCHHHHHHHHHHHHHHcCCcHHHHH---HHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHH
Confidence 3788999999999886543111111 2222235555555433 2478888888888764221 1222 22567
Q ss_pred HHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHH-HHhhhhhHHHHHHHHhcCCCcccccCchhhhHHH
Q 005232 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL-EMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHI 654 (707)
Q Consensus 576 l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l-~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i 654 (707)
++..+..++..+ ..+.+.+...+++++++...- +.+..-.. ...+.++++ ++..... .-....+
T Consensus 378 Lv~~l~~lL~~~---~~d~~v~~~AveaLayLS~~~-~vk~~lv~d~g~Ip~LV~----LL~s~d~-------~i~~~al 442 (810)
T 3now_A 378 LAEACRRFLIKP---GKDKDIRRWAADGLAYLTLDA-ECKEKLIEDKASIHALMD----LARGGNQ-------SCLYGVV 442 (810)
T ss_dssp HHHHHHHHHHCS---SCCSSHHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHH----HHHTTCG-------GGHHHHH
T ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHHHhCCc-HHHHHHHHccchHHHHHH----HhCCCCh-------HHHHHHH
Confidence 788888877753 134678999999999986652 11111111 234444443 3332211 1111234
Q ss_pred HHHHHHhhhcC--------------------Cccc----------HHHHHH-HHhHHHHHHHHhhcCchhHHHHHHHHHh
Q 005232 655 DRFAYIFRYVN--------------------HPEA----------VADAIQ-RLWPIFKAIFDIRAWDMRTMESLCRACK 703 (707)
Q Consensus 655 ~~l~~~~~~~~--------------------~~~p----------~~~~~~-~~~p~l~~i~~~~~~~~~v~e~~c~~~~ 703 (707)
..|+.+...-. .++| +..+++ ...|.|-+++.. .+..+-|.+++++.
T Consensus 443 ~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~vqe~Aa~aL~ 520 (810)
T 3now_A 443 TTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT--ESHNSQELIARVLN 520 (810)
T ss_dssp HHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 44444444210 0122 122222 578888888875 56788888888876
Q ss_pred hh
Q 005232 704 YA 705 (707)
Q Consensus 704 ~~ 705 (707)
..
T Consensus 521 NL 522 (810)
T 3now_A 521 AV 522 (810)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 94
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=35.59 E-value=75 Score=26.31 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=40.5
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChhHHHHHHHHHHh
Q 005232 11 LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRS 66 (707)
Q Consensus 11 l~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~LL~~~~~~~~v~~faa~~L~~ 66 (707)
+..+...+|+..|..|-..|.++. .+++......++.+ .+..||..|+..|.+
T Consensus 78 L~~~L~d~~~~VR~~A~~aL~~~~-~~~a~~~L~~~l~d--~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 78 LIKLLEDDSGFVRSGAARSLEQIG-GERVRAAMEKLAET--GTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHHC-SHHHHHHHHHHTTS--CCTHHHHHHHHHGGG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHhC--CCHHHHHHHHHHHHh
Confidence 333345778999999999999887 57777777788863 467899999888753
No 95
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=35.48 E-value=4.6e+02 Score=28.35 Aligned_cols=198 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHH--HHHHHHhccCCCh-HHHHHHHHHHHHHH----HH
Q 005232 492 MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILAS--VLSILTSGMSTSE-DTAAAAALAFRHIC----DD 564 (707)
Q Consensus 492 l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~--~l~~l~~~l~~~~-~v~~~Aa~al~~l~----~~ 564 (707)
++.+++.|.+ .++.++..+...+...+.--..+.. .+-. .++.|++.|.++. .++..|+.||.+|+ .+
T Consensus 50 i~~LV~~L~s--~~~~~q~~Aa~~L~~La~~~~~~k~---~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 50 LPEVIAMLGF--RLDAVKSNAAAYLQHLCYRNDKVKT---DVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp HHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHH---HHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHHcCChHHHH---HHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Q ss_pred hhhhhc--CCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcc
Q 005232 565 CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEIL 642 (707)
Q Consensus 565 c~~~l~--~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~ 642 (707)
++..+. .-++.|+..+..- -+.+.+..+..++..+.. .++........-+.++++.+..-........
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~--------~~~~~~e~aa~aL~nLS~--~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKA--------RDMDLTEVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHC--------CSHHHHHHHHHHHHHHTT--SGGGHHHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred HHHHHHHcCCHHHHHHHHcCC--------CCHHHHHHHHHHHHHHhC--CchhhHHHHhccHHHHHHHHhcccccccccc
Q ss_pred c---ccCchhhhHHHHHHHHHhhhcCCcccH--------HHHHHHHhHHHHHHHHhhcCchhHHHHHHHHHhh
Q 005232 643 Q---KKHPRDLTVHIDRFAYIFRYVNHPEAV--------ADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY 704 (707)
Q Consensus 643 ~---~~~~~~~~~~i~~l~~~~~~~~~~~p~--------~~~~~~~~p~l~~i~~~~~~~~~v~e~~c~~~~~ 704 (707)
. +.........+..-+.+++.+...++- --++..+.-++..-+.....+..++|.++..+++
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~N 267 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN 267 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
No 96
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=34.08 E-value=5.4e+02 Score=28.82 Aligned_cols=138 Identities=9% Similarity=0.042 Sum_probs=76.7
Q ss_pred CCcchhhHHHHHHHHhhccCCcc----ccccHHHHHhhcCCCCCh-HHHHHHHHHHHHhhHHHHhhCCCC---chhHHHH
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQ-PQLLQTVCLTIGAYSKWFDAASSD---PSILASV 536 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~----~~~~l~~l~~~l~~l~~~-~~l~~t~~~~ig~~~~~l~~~p~~---~~~l~~~ 536 (707)
.+-.-.|.+..++..++..-... ....++.+++.+.+-+.. ..++..++..+.+..- ..+|.. ..-...+
T Consensus 469 ~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli--s~np~~~f~~~~~~~a 546 (778)
T 3opb_A 469 LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI--FTNPGLIFKKYSALNA 546 (778)
T ss_dssp SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH--TSCHHHHSSSSCSTTH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh--cCCHHHHcCCCccccc
Confidence 34566889999999998662211 134567788877654311 2478888888888752 223220 0000134
Q ss_pred HHHHHhccCC-Ch-------------HH-HHHHHHHHHHHHHHh-------hhhhcCCHHHHHHHHHHHhhccCCCCCCh
Q 005232 537 LSILTSGMST-SE-------------DT-AAAAALAFRHICDDC-------RKKLCGYLDGLYNVYRTAVNGEGSLKVSA 594 (707)
Q Consensus 537 l~~l~~~l~~-~~-------------~v-~~~Aa~al~~l~~~c-------~~~l~~~~~~l~~~~~~~~~~~~~~~l~~ 594 (707)
++.|+.-|+. +. .+ .-.|..||.+++..- +..+... ...+..+.+++..+ +.
T Consensus 547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s~-----n~ 620 (778)
T 3opb_A 547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLDE-----NV 620 (778)
T ss_dssp HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGCS-----SH
T ss_pred hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhCC-----CH
Confidence 4444444431 11 02 457889999999743 3333322 11334444444321 24
Q ss_pred hhHHHHHHHHHHHHhc
Q 005232 595 EDSLHLVEALSMVITE 610 (707)
Q Consensus 595 ~~~~~l~eai~~vi~~ 610 (707)
..+....++++.++..
T Consensus 621 ~VrrAA~elI~NL~~~ 636 (778)
T 3opb_A 621 PLQRSTLELISNMMSH 636 (778)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCC
Confidence 5688889999998874
No 97
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=31.57 E-value=3.5e+02 Score=25.83 Aligned_cols=164 Identities=10% Similarity=0.103 Sum_probs=95.5
Q ss_pred CChhHHHHHHHHHHhhhhcCCCCCChhhHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHhhccccccCC-----cc
Q 005232 52 SNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK-KFHKGPPKVRTQISIAVAALAVHISAEDWGG-----GG 125 (707)
Q Consensus 52 ~~~~v~~faa~~L~~ki~~~w~~l~~~~~~~lr~~Ll~~l~-~~~~~~~~v~~qL~~ala~l~~~~~~~~W~~-----~~ 125 (707)
++..-+.-|...|...+.. .++.....-+-++.|+. ++...+..|..+....|..++-.+....+.- ..
T Consensus 58 ~d~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~ 132 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSA 132 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 3556677788888877654 23333333444677765 3445566677777777777665443222221 01
Q ss_pred chHHHHHhcCCCCCchhHHHHHhccchhhcccccccCChHHHHHHHHHH---HH-hhH-HHHHHHHHhhhhh--HHHHHH
Q 005232 126 IVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKEL---TS-QME-VALSTLTACLHIN--ELKEQV 198 (707)
Q Consensus 126 ~i~~l~~~~~~~~~~~~~~L~~L~~L~EE~~~~~~~~~~~~r~~~~~~l---~~-~~~-~Vl~~l~~~l~~~--~~~~~~ 198 (707)
++|.+++.++.+. ..-|..+++.+ .. +.+ .|+..+...+.+. ..+..+
T Consensus 133 ~lP~LveKlGd~k-------------------------~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~ 187 (266)
T 2of3_A 133 FVPYLLLKTGEAK-------------------------DNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSEC 187 (266)
T ss_dssp HHHHHHHGGGCSS-------------------------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHhCCCh-------------------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 4455555554321 12233333222 11 222 3777777776543 467788
Q ss_pred HHHHHHHHhccCCCCCcccccchhH---HHHHhcCCCC--ccHHHHHHHHHHHHhhhc
Q 005232 199 LEAFASWLRLKHRIPGSVLASHPLV---LTALSSLHSE--ILSEASVNVISELIHYSA 251 (707)
Q Consensus 199 l~~l~sWi~~~~~~~~~~~~~~~ll---~~~~~~L~~~--~~~~~a~~~l~~ii~~~~ 251 (707)
+.++.+-+.-. +++. ...+ +.+...+.++ ++.++|++|++++....+
T Consensus 188 l~~l~~li~~~-G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 188 LLVIEYYITNA-GISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHH-CSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc-CCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 88888888754 3442 2244 7777888865 578999999999987653
No 98
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=27.33 E-value=3.7e+02 Score=30.14 Aligned_cols=154 Identities=14% Similarity=0.173 Sum_probs=88.7
Q ss_pred HHHHHHHHhhccCCc---c-cc------ccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCC--chhH----HH
Q 005232 472 AALFCIRAISTYVSV---V-EA------EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD--PSIL----AS 535 (707)
Q Consensus 472 a~l~~l~~ia~~~~~---~-~~------~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~--~~~l----~~ 535 (707)
-++.+++.++..-.. + .. ..++.+.+.+. ..|+.+++++++++..++. +|+. ..+. +.
T Consensus 578 eAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~--s~n~~VrrAA~elI~NL~~----~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML--DENVPLQRSTLELISNMMS----HPLTIAAKFFNLENPQ 651 (778)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHT----SGGGTGGGTSCCSSHH
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh--CCCHHHHHHHHHHHHHHhC----CcHHHHHHHHhhcCch
Confidence 457787888775421 1 11 13444444443 3588999999999998764 3331 0111 22
Q ss_pred ---HHHHHHhccCCC-hHHHHHHHHHHHHHHHHhh---hhhcC---CHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHH
Q 005232 536 ---VLSILTSGMSTS-EDTAAAAALAFRHICDDCR---KKLCG---YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (707)
Q Consensus 536 ---~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~c~---~~l~~---~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~ 605 (707)
-++.++..++.. .+++.+|+.||..++.... ..+.. .++.++..+.... -+.+-+.+.+-.+.
T Consensus 652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~-------~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQI-------DDIELRQRLLMLFF 724 (778)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccC-------CCHHHHHHHHHHHH
Confidence 155555555433 2499999999999975322 22332 2344444444321 13667888888888
Q ss_pred HHHhcCChHHHHHHHHHh--hhhhHHHHHHHHhcC
Q 005232 606 MVITELPQVDAKKALEML--CLPVVTPLQEIINQG 638 (707)
Q Consensus 606 ~vi~~~p~~~~~~~l~~l--~~p~~~~L~~~~~~~ 638 (707)
.++...|.+.-.+.+..+ -.++.+.|.++++..
T Consensus 725 NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 725 GLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred HHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 888755543322223333 366777888887765
No 99
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=23.98 E-value=7.3e+02 Score=27.07 Aligned_cols=96 Identities=8% Similarity=0.111 Sum_probs=52.8
Q ss_pred CCcchhhHHHHHHHHhhccCCcc-ccccHHHHHhhcCCCCChHHHHHHHHHHHH------------------------hh
Q 005232 465 NEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQQPQLLQTVCLTIG------------------------AY 519 (707)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig------------------------~~ 519 (707)
.--.++-+|+..+.++++..+.. .+.-++.+++.|.+-..+.-+.+.+++++. .+
T Consensus 34 tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~ 113 (651)
T 3grl_A 34 TLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQF 113 (651)
T ss_dssp CSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHH
Confidence 33556667888888887766544 223356666655543333333333333331 12
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh
Q 005232 520 SKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK 567 (707)
Q Consensus 520 ~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~c~~ 567 (707)
++.|-++++ .++.++.. +.... .++.+|...|..+|....+
T Consensus 114 ~d~f~~~~~---~i~~Ll~l----L~~~df~vR~~alqlL~~L~~~r~~ 155 (651)
T 3grl_A 114 TEIFIKQQE---NVTLLLSL----LEEFDFHVRWPGVKLLTSLLKQLGP 155 (651)
T ss_dssp HHHHHHSTH---HHHHHHHH----TTCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHcCCc---cHHHHHHH----hcCccHHHHHHHHHHHHHHHhcCcH
Confidence 232323333 44444444 44443 4888999999999976654
No 100
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=23.04 E-value=7.7e+02 Score=29.31 Aligned_cols=139 Identities=6% Similarity=0.001 Sum_probs=74.0
Q ss_pred hHHHHHHHHHh-ccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccC--CC-CC-C---hhhHHHHHHH
Q 005232 532 ILASVLSILTS-GMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEG--SL-KV-S---AEDSLHLVEA 603 (707)
Q Consensus 532 ~l~~~l~~l~~-~l~~~~~v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~--~~-~l-~---~~~~~~l~ea 603 (707)
.++.+++.+.+ ...+|. ++..+...+.+++.-...+ ..+++.+++.+...+.... .. .. + .+.+.....+
T Consensus 530 ~~~~Ll~~ll~~~~~~p~-l~~~~i~~l~~l~~~~~~~-p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~a 607 (1204)
T 3a6p_A 530 DGIELLQMVLNFDTKDPL-ILSCVLTNVSALFPFVTYR-PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSS 607 (1204)
T ss_dssp HHHHHHHHHHHCCCSCHH-HHHHHHHHHHHHGGGGGTC-GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCChH-HHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHH
Confidence 56777777665 356666 7777777777666543321 2467888887776554311 00 00 1 1234444444
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhhHHHHHHHHhcCCCcccccCchhhhHHHHHHHHHhhhcCCcccHHHHHHHHhHHH
Q 005232 604 LSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIF 681 (707)
Q Consensus 604 i~~vi~~~p~~~~~~~l~~l~~p~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~~~~~~~~~p~l 681 (707)
+.++... ..+.+.++++++.+.+++++.....- ...+.....+.++.+...+.+.+-...+++.+++.+
T Consensus 608 l~~L~~~-----~~~~L~p~~~~i~~~~~~~l~~~~~l----~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~ 676 (1204)
T 3a6p_A 608 IIKMCRD-----YPQLVLPNFDMLYNHVKQLLSNELLL----TQMEKCALMEALVLISNQFKNYERQKVFLEELMAPV 676 (1204)
T ss_dssp HHHHHHH-----CHHHHGGGHHHHHHHHHHHHHSTTTS----CHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----hhHHHHHHHHHHHHHHHHHHhCcccc----cHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4444443 34667777788888888877643200 123344455667666333332222334455555433
No 101
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=21.00 E-value=5e+02 Score=26.38 Aligned_cols=28 Identities=18% Similarity=0.545 Sum_probs=23.3
Q ss_pred HHHHHHHhhhcccCchhhhhhhHHHHHH
Q 005232 315 MLIVHALLEVASHPEYDIASMTFNFWHS 342 (707)
Q Consensus 315 ~~~~~~ll~~~~~~~~~v~~~~l~FW~~ 342 (707)
..++..+-.|.+.++..|++.++.||..
T Consensus 337 ~~lF~~la~ci~S~hfqVAErAL~~wnN 364 (392)
T 2jak_A 337 EPLFRQLAKCVSSPHFQVAERALYYWNN 364 (392)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCc
Confidence 3566777788889999999999999963
No 102
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=20.46 E-value=3.6e+02 Score=25.39 Aligned_cols=122 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCcccccc--HHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-H
Q 005232 473 ALFCIRAISTYVSVVEAEV--MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-D 549 (707)
Q Consensus 473 ~l~~l~~ia~~~~~~~~~~--l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~p~~~~~l~~~l~~l~~~l~~~~-~ 549 (707)
++-|++.+-++++.+.+.+ +...+.-+.. ..++.++.-+...+|.. .+. ...+.+.+++++-+..+. .
T Consensus 95 A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl------kv~--~~~~~V~~~l~sLl~Skd~~ 165 (265)
T 3b2a_A 95 ALRALGYLVKDVPMGSKTFLKAAKTLVSLLE-SPDDMMRIETIDVLSKL------QPL--EDSKLVRTYINELVVSPDLY 165 (265)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC------CBS--CCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhCcC------Ccc--cchHHHHHHHHHHHhCCChh
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhccCCCCCChhhHHHHHHHHHHHHhc
Q 005232 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (707)
Q Consensus 550 v~~~Aa~al~~l~~~c~~~l~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (707)
+..+|-.+|.++....... .++..++.-+..+++. -++.-+...+.++-.+++.
T Consensus 166 vK~agl~~L~eia~~S~D~--~i~~~I~~eI~elL~~-----eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 166 TKVAGFCLFLNMLNSSADS--GHLTLILDEIPSLLQN-----DNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHHHHGGGCSSC--CCGGGTTTTHHHHHTC-----SCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhcccCCH--HHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcC
Done!