Query 005233
Match_columns 707
No_of_seqs 566 out of 2639
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 20:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0234 Fructose-6-phosphate 2 100.0 7.2E-63 1.6E-67 533.2 31.4 352 346-707 23-385 (438)
2 PTZ00322 6-phosphofructo-2-kin 100.0 1.5E-60 3.2E-65 556.2 38.8 343 350-707 214-587 (664)
3 PF01591 6PF2K: 6-phosphofruct 100.0 9.4E-51 2E-55 413.3 20.4 212 343-559 3-222 (222)
4 PRK13463 phosphatase PhoE; Pro 100.0 8.4E-30 1.8E-34 257.0 15.5 145 559-707 2-153 (203)
5 PRK14116 gpmA phosphoglyceromu 100.0 2.1E-29 4.5E-34 258.8 16.5 147 559-707 1-184 (228)
6 PRK15004 alpha-ribazole phosph 100.0 1.9E-29 4.2E-34 253.2 15.7 144 560-707 1-151 (199)
7 PRK14119 gpmA phosphoglyceromu 100.0 3.4E-29 7.3E-34 257.1 16.0 147 559-707 1-184 (228)
8 PRK01295 phosphoglyceromutase; 100.0 7.3E-29 1.6E-33 251.1 16.9 147 559-707 2-160 (206)
9 PRK01112 phosphoglyceromutase; 100.0 9.2E-29 2E-33 254.1 15.9 145 559-707 1-183 (228)
10 PRK14117 gpmA phosphoglyceromu 100.0 1.4E-28 2.9E-33 253.2 16.7 147 559-707 1-184 (230)
11 PRK14118 gpmA phosphoglyceromu 100.0 1.5E-28 3.3E-33 252.3 16.3 146 560-707 1-183 (227)
12 TIGR03162 ribazole_cobC alpha- 100.0 2.9E-28 6.4E-33 239.0 15.1 140 562-707 1-147 (177)
13 COG0406 phoE Broad specificity 100.0 5E-28 1.1E-32 243.7 16.4 147 559-707 2-155 (208)
14 PRK14120 gpmA phosphoglyceromu 100.0 8.3E-28 1.8E-32 250.1 17.1 149 557-707 2-185 (249)
15 TIGR03848 MSMEG_4193 probable 99.9 1.6E-27 3.4E-32 240.2 16.1 141 561-707 1-154 (204)
16 PRK14115 gpmA phosphoglyceromu 99.9 2E-27 4.4E-32 246.9 16.7 146 560-707 1-183 (247)
17 PRK03482 phosphoglycerate muta 99.9 1.6E-27 3.4E-32 242.0 15.3 145 559-707 1-152 (215)
18 TIGR01258 pgm_1 phosphoglycera 99.9 2.5E-27 5.4E-32 246.0 16.6 146 560-707 1-183 (245)
19 PRK13462 acid phosphatase; Pro 99.9 2.6E-27 5.6E-32 239.3 16.1 139 558-707 4-149 (203)
20 PF00300 His_Phos_1: Histidine 99.9 3E-27 6.4E-32 224.9 10.4 145 561-707 1-153 (158)
21 smart00855 PGAM Phosphoglycera 99.9 1.6E-26 3.4E-31 222.3 15.4 141 561-707 1-150 (155)
22 PRK07238 bifunctional RNase H/ 99.9 4.6E-26 9.9E-31 249.8 16.9 147 557-707 169-322 (372)
23 KOG0235 Phosphoglycerate mutas 99.9 1.2E-23 2.6E-28 212.1 13.1 148 557-706 3-165 (214)
24 PTZ00123 phosphoglycerate muta 99.9 3.3E-22 7.2E-27 206.6 15.1 134 572-707 1-171 (236)
25 COG0588 GpmA Phosphoglycerate 99.9 2.5E-21 5.4E-26 192.5 11.8 146 559-706 1-183 (230)
26 cd05816 CBM20_DPE2_repeat2 Dis 99.7 5.1E-18 1.1E-22 152.8 10.5 93 33-126 2-94 (99)
27 PF00686 CBM_20: Starch bindin 99.7 1.3E-17 2.8E-22 149.0 8.8 89 30-122 1-93 (96)
28 cd07067 HP_PGM_like Histidine 99.7 3.6E-17 7.9E-22 156.2 11.1 101 561-707 1-109 (153)
29 PTZ00122 phosphoglycerate muta 99.7 8.1E-17 1.8E-21 172.0 12.6 124 560-707 103-242 (299)
30 COG0529 CysC Adenylylsulfate k 99.7 1.4E-15 3E-20 148.4 13.9 119 346-478 18-137 (197)
31 COG0645 Predicted kinase [Gene 99.6 1.6E-15 3.4E-20 147.5 12.4 143 351-519 1-149 (170)
32 cd05467 CBM20 The family 20 ca 99.6 2.2E-15 4.7E-20 133.9 9.9 85 32-119 1-87 (96)
33 cd05807 CBM20_CGTase CGTase, C 99.6 2.5E-15 5.5E-20 135.7 9.3 91 29-122 1-95 (101)
34 PF01583 APS_kinase: Adenylyls 99.6 6.8E-15 1.5E-19 142.8 12.9 116 350-478 1-116 (156)
35 cd07040 HP Histidine phosphata 99.6 8.5E-15 1.8E-19 138.7 11.5 98 561-707 1-109 (153)
36 cd05817 CBM20_DSP Dual-specifi 99.6 6.5E-15 1.4E-19 132.9 8.8 82 33-116 2-83 (100)
37 PF13671 AAA_33: AAA domain; P 99.6 5.4E-14 1.2E-18 132.5 15.2 120 353-486 1-122 (143)
38 cd05810 CBM20_alpha_MTH Glucan 99.6 8.3E-15 1.8E-19 131.6 8.6 87 32-119 2-89 (97)
39 PRK06193 hypothetical protein; 99.6 2.5E-14 5.3E-19 144.9 13.0 116 559-706 42-164 (206)
40 KOG4754 Predicted phosphoglyce 99.6 1.7E-14 3.6E-19 143.5 11.2 149 559-707 14-190 (248)
41 cd05820 CBM20_novamyl Novamyl 99.6 1.7E-14 3.7E-19 130.9 9.8 96 30-128 2-101 (103)
42 cd05809 CBM20_beta_amylase Bet 99.5 4E-14 8.8E-19 127.5 10.1 87 30-118 2-90 (99)
43 cd05808 CBM20_alpha_amylase Al 99.5 3.7E-14 8.1E-19 126.1 9.7 83 32-118 2-84 (95)
44 cd05815 CBM20_DPE2_repeat1 Dis 99.5 8.1E-14 1.8E-18 125.8 10.1 84 33-119 2-88 (101)
45 cd05811 CBM20_glucoamylase Glu 99.5 9.6E-14 2.1E-18 126.2 10.5 90 28-121 4-97 (106)
46 TIGR00249 sixA phosphohistidin 99.5 1.7E-13 3.7E-18 132.7 12.9 63 560-626 1-63 (152)
47 cd05814 CBM20_Prei4 Prei4, N-t 99.5 5E-14 1.1E-18 131.2 7.7 83 33-116 3-94 (120)
48 cd05813 CBM20_genethonin_1 Gen 99.5 2.9E-13 6.4E-18 120.8 9.9 79 32-115 2-80 (95)
49 PHA02530 pseT polynucleotide k 99.4 4E-12 8.7E-17 135.1 18.6 146 351-516 2-150 (300)
50 PLN02950 4-alpha-glucanotransf 99.4 4.2E-13 9.1E-18 161.1 11.2 101 26-128 148-248 (909)
51 PRK10848 phosphohistidine phos 99.4 1.5E-12 3.3E-17 127.1 12.9 63 560-626 1-63 (159)
52 cd05818 CBM20_water_dikinase P 99.4 7.8E-13 1.7E-17 117.7 9.9 83 31-120 2-84 (92)
53 cd02027 APSK Adenosine 5'-phos 99.4 2.1E-12 4.6E-17 124.5 13.0 113 353-477 1-113 (149)
54 TIGR01663 PNK-3'Pase polynucle 99.4 2.1E-12 4.6E-17 147.1 15.1 137 349-527 367-507 (526)
55 PRK05537 bifunctional sulfate 99.4 8E-13 1.7E-17 152.5 11.8 147 320-479 361-509 (568)
56 KOG3734 Predicted phosphoglyce 99.4 1.2E-12 2.7E-17 136.2 11.1 149 556-707 9-204 (272)
57 COG2062 SixA Phosphohistidine 99.4 3.4E-12 7.4E-17 124.5 11.5 66 559-626 1-66 (163)
58 PRK15416 lipopolysaccharide co 99.4 2.7E-12 6E-17 129.2 10.8 80 558-640 53-134 (201)
59 KOG0635 Adenosine 5'-phosphosu 99.3 5.8E-12 1.3E-16 119.9 10.8 109 348-470 28-136 (207)
60 cd02021 GntK Gluconate kinase 99.3 2.4E-11 5.2E-16 116.1 14.1 138 353-518 1-140 (150)
61 TIGR03574 selen_PSTK L-seryl-t 99.3 1.6E-11 3.4E-16 127.8 13.0 112 353-478 1-113 (249)
62 TIGR00455 apsK adenylylsulfate 99.3 2.3E-11 4.9E-16 120.7 13.2 118 348-477 15-132 (184)
63 cd05806 CBM20_laforin Laforin 99.3 1.1E-11 2.4E-16 114.0 10.1 83 32-117 2-96 (112)
64 COG0703 AroK Shikimate kinase 99.3 8.5E-12 1.8E-16 122.6 9.9 138 353-512 4-144 (172)
65 PRK06762 hypothetical protein; 99.3 2.6E-11 5.6E-16 117.9 13.0 114 351-482 2-116 (166)
66 PF08433 KTI12: Chromatin asso 99.3 4.8E-11 1E-15 126.0 15.4 115 353-481 3-119 (270)
67 COG4639 Predicted kinase [Gene 99.3 3.9E-11 8.4E-16 115.3 11.5 112 351-478 2-114 (168)
68 PRK00889 adenylylsulfate kinas 99.3 8E-11 1.7E-15 115.7 14.0 115 349-477 2-116 (175)
69 cd00227 CPT Chloramphenicol (C 99.2 5.3E-11 1.1E-15 117.3 12.4 117 352-482 3-131 (175)
70 COG4088 Predicted nucleotide k 99.2 4.4E-11 9.6E-16 119.5 10.2 134 353-506 3-138 (261)
71 PRK03846 adenylylsulfate kinas 99.2 1.4E-10 3.1E-15 116.6 14.0 119 346-478 19-138 (198)
72 PRK05506 bifunctional sulfate 99.2 3.5E-11 7.5E-16 141.2 10.5 120 346-478 455-574 (632)
73 TIGR01313 therm_gnt_kin carboh 99.1 5.4E-10 1.2E-14 108.3 13.8 114 354-483 1-115 (163)
74 PRK11545 gntK gluconate kinase 99.1 4.7E-10 1E-14 109.8 13.3 141 357-527 1-143 (163)
75 PRK13948 shikimate kinase; Pro 99.1 4.1E-10 8.9E-15 112.5 11.6 139 350-511 9-150 (182)
76 cd00464 SK Shikimate kinase (S 99.1 4.2E-10 9E-15 107.3 10.6 139 354-512 2-140 (154)
77 PRK05541 adenylylsulfate kinas 99.1 1.4E-09 2.9E-14 107.1 13.4 115 350-480 6-120 (176)
78 PRK00625 shikimate kinase; Pro 99.1 4.1E-10 9E-15 111.5 9.7 138 353-512 2-142 (173)
79 TIGR03575 selen_PSTK_euk L-ser 99.0 1.1E-09 2.3E-14 119.1 12.1 128 353-482 1-175 (340)
80 PRK12339 2-phosphoglycerate ki 99.0 7.9E-09 1.7E-13 104.5 16.8 126 350-484 2-142 (197)
81 PRK14532 adenylate kinase; Pro 99.0 1.9E-09 4.1E-14 107.1 9.3 145 353-516 2-155 (188)
82 PRK13949 shikimate kinase; Pro 98.9 3.3E-09 7.1E-14 104.6 10.1 139 354-511 4-146 (169)
83 PLN02950 4-alpha-glucanotransf 98.9 2.6E-09 5.6E-14 128.9 11.0 85 33-119 9-97 (909)
84 PRK13946 shikimate kinase; Pro 98.9 5E-09 1.1E-13 104.3 11.1 139 350-510 9-150 (184)
85 PRK12337 2-phosphoglycerate ki 98.9 4.4E-08 9.6E-13 109.7 19.0 130 349-485 253-407 (475)
86 PRK14527 adenylate kinase; Pro 98.9 4.2E-09 9E-14 105.3 9.6 157 350-527 5-175 (191)
87 TIGR01359 UMP_CMP_kin_fam UMP- 98.9 3.2E-09 7E-14 104.6 8.3 152 353-527 1-167 (183)
88 PRK14531 adenylate kinase; Pro 98.9 2.3E-09 4.9E-14 106.6 6.4 140 352-517 3-153 (183)
89 PF06414 Zeta_toxin: Zeta toxi 98.9 2.7E-08 5.8E-13 100.2 13.3 131 348-484 12-143 (199)
90 PRK05057 aroK shikimate kinase 98.9 1.9E-08 4.1E-13 99.4 11.7 139 351-512 4-146 (172)
91 PRK13947 shikimate kinase; Pro 98.9 1.4E-08 2.9E-13 99.1 10.6 137 353-510 3-141 (171)
92 PRK09825 idnK D-gluconate kina 98.8 4.3E-08 9.3E-13 97.3 13.8 146 352-527 4-151 (176)
93 PRK14021 bifunctional shikimat 98.8 1.2E-08 2.7E-13 117.7 11.3 144 350-513 5-152 (542)
94 KOG3062 RNA polymerase II elon 98.8 1.8E-08 3.9E-13 102.1 10.9 138 353-506 3-142 (281)
95 KOG4238 Bifunctional ATP sulfu 98.8 1.1E-08 2.4E-13 108.9 8.7 110 348-470 47-157 (627)
96 PRK00131 aroK shikimate kinase 98.8 2.9E-08 6.2E-13 96.3 9.4 141 350-512 3-146 (175)
97 PLN02199 shikimate kinase 98.7 4.9E-08 1.1E-12 103.9 10.4 141 351-511 102-251 (303)
98 KOG4609 Predicted phosphoglyce 98.7 2.9E-08 6.4E-13 99.3 8.2 75 558-639 93-172 (284)
99 PLN02200 adenylate kinase fami 98.7 5.6E-08 1.2E-12 100.8 10.2 154 349-527 41-207 (234)
100 PRK01184 hypothetical protein; 98.7 3.3E-07 7.1E-12 90.7 14.4 121 352-483 2-125 (184)
101 PRK03731 aroL shikimate kinase 98.7 1.1E-07 2.3E-12 93.0 10.2 137 353-511 4-145 (171)
102 COG3265 GntK Gluconate kinase 98.6 2.5E-07 5.5E-12 88.6 11.7 140 358-527 2-142 (161)
103 PRK12338 hypothetical protein; 98.6 3.3E-07 7.2E-12 98.8 14.0 127 350-484 3-152 (319)
104 PF07931 CPT: Chloramphenicol 98.6 3.5E-07 7.7E-12 90.8 12.0 122 352-482 2-130 (174)
105 PRK00279 adk adenylate kinase; 98.6 1.5E-07 3.3E-12 95.9 9.6 147 353-517 2-183 (215)
106 TIGR01360 aden_kin_iso1 adenyl 98.6 2.7E-07 5.8E-12 90.9 10.9 140 352-515 4-154 (188)
107 KOG3354 Gluconate kinase [Carb 98.6 6.9E-07 1.5E-11 86.2 13.0 122 350-484 11-140 (191)
108 PRK08154 anaerobic benzoate ca 98.6 1.4E-07 3E-12 101.8 9.2 148 346-510 128-275 (309)
109 cd01428 ADK Adenylate kinase ( 98.6 5.7E-07 1.2E-11 89.1 12.8 147 354-517 2-173 (194)
110 PRK14530 adenylate kinase; Pro 98.5 1.2E-06 2.7E-11 89.2 13.2 149 353-517 5-182 (215)
111 TIGR01351 adk adenylate kinase 98.5 1.6E-07 3.5E-12 95.3 6.1 146 354-517 2-180 (210)
112 PRK13951 bifunctional shikimat 98.5 3.9E-07 8.4E-12 104.1 9.8 136 353-513 2-139 (488)
113 PF01202 SKI: Shikimate kinase 98.5 1.6E-07 3.4E-12 91.3 5.4 132 360-512 1-134 (158)
114 PRK04040 adenylate kinase; Pro 98.4 2.8E-06 6.1E-11 85.3 12.6 39 351-392 2-40 (188)
115 PRK06696 uridine kinase; Valid 98.4 1.8E-06 3.9E-11 88.6 10.7 44 348-391 19-62 (223)
116 PRK06217 hypothetical protein; 98.4 4.3E-06 9.4E-11 83.1 12.4 128 353-509 3-133 (183)
117 PF13207 AAA_17: AAA domain; P 98.3 2.5E-06 5.4E-11 78.2 8.8 33 353-390 1-33 (121)
118 PRK03839 putative kinase; Prov 98.3 1E-06 2.2E-11 87.1 6.6 30 353-382 2-31 (180)
119 PRK04220 2-phosphoglycerate ki 98.3 3.6E-05 7.8E-10 82.6 17.7 130 349-485 90-238 (301)
120 cd02028 UMPK_like Uridine mono 98.3 7.4E-06 1.6E-10 81.5 11.5 151 353-517 1-169 (179)
121 cd01672 TMPK Thymidine monopho 98.3 4.9E-05 1.1E-09 75.0 17.1 34 352-385 1-34 (200)
122 PRK00698 tmk thymidylate kinas 98.2 6.4E-05 1.4E-09 75.1 18.1 34 351-384 3-36 (205)
123 PRK00300 gmk guanylate kinase; 98.2 8.7E-06 1.9E-10 81.8 11.5 27 350-376 4-30 (205)
124 PLN02674 adenylate kinase 98.2 6.4E-06 1.4E-10 86.1 10.6 151 351-517 31-214 (244)
125 PRK02496 adk adenylate kinase; 98.2 8.2E-06 1.8E-10 80.8 10.9 138 353-516 3-152 (184)
126 PRK14528 adenylate kinase; Pro 98.2 1E-05 2.2E-10 80.9 11.5 145 353-517 3-157 (186)
127 PRK08356 hypothetical protein; 98.2 4.9E-05 1.1E-09 76.4 16.4 120 350-484 4-137 (195)
128 PRK10078 ribose 1,5-bisphospho 98.2 9.3E-06 2E-10 80.9 10.5 25 352-376 3-27 (186)
129 cd02020 CMPK Cytidine monophos 98.2 2.3E-05 4.9E-10 73.8 12.5 145 353-527 1-146 (147)
130 TIGR03263 guanyl_kin guanylate 98.2 1.4E-05 3.1E-10 78.4 11.3 27 352-378 2-28 (180)
131 PRK08233 hypothetical protein; 98.2 4.3E-05 9.3E-10 74.8 14.6 27 350-376 2-28 (182)
132 TIGR02322 phosphon_PhnN phosph 98.1 2.3E-05 4.9E-10 77.2 12.2 27 352-378 2-28 (179)
133 PRK14737 gmk guanylate kinase; 98.1 2.3E-05 4.9E-10 78.7 11.9 27 350-376 3-29 (186)
134 PRK06761 hypothetical protein; 98.1 1.4E-05 2.9E-10 85.3 10.8 123 351-483 3-128 (282)
135 TIGR00041 DTMP_kinase thymidyl 98.1 0.00023 5E-09 70.8 19.0 35 351-385 3-37 (195)
136 PRK07667 uridine kinase; Provi 98.1 5.7E-05 1.2E-09 76.0 14.6 41 350-390 16-56 (193)
137 PRK14738 gmk guanylate kinase; 98.1 2.4E-05 5.1E-10 79.6 12.0 26 349-374 11-36 (206)
138 PRK13975 thymidylate kinase; P 98.1 6.2E-05 1.4E-09 75.0 14.5 27 351-377 2-28 (196)
139 PTZ00088 adenylate kinase 1; P 98.1 4.1E-05 8.8E-10 79.4 13.4 151 350-517 5-196 (229)
140 PRK14526 adenylate kinase; Pro 98.1 7.1E-06 1.5E-10 84.0 7.3 143 354-517 3-178 (211)
141 PRK07261 topology modulation p 98.1 1.3E-05 2.9E-10 79.0 9.0 30 353-382 2-31 (171)
142 TIGR02173 cyt_kin_arch cytidyl 98.1 1.2E-05 2.6E-10 78.0 8.2 36 352-392 1-36 (171)
143 COG1102 Cmk Cytidylate kinase 98.1 1.4E-05 2.9E-10 78.0 8.4 133 352-513 1-134 (179)
144 PRK05416 glmZ(sRNA)-inactivati 98.1 6.2E-05 1.3E-09 80.6 14.1 108 351-491 6-115 (288)
145 PRK13973 thymidylate kinase; P 98.0 0.00042 9.1E-09 70.8 18.9 35 351-385 3-37 (213)
146 PLN02459 probable adenylate ki 98.0 1.8E-05 3.8E-10 83.4 8.9 118 350-483 28-154 (261)
147 PRK14529 adenylate kinase; Pro 98.0 2.6E-05 5.6E-10 80.5 9.9 115 354-483 3-127 (223)
148 PF08303 tRNA_lig_kinase: tRNA 98.0 0.00011 2.4E-09 72.1 13.6 135 353-519 1-152 (168)
149 PRK08118 topology modulation p 98.0 2.6E-05 5.6E-10 76.8 9.3 31 353-383 3-33 (167)
150 PRK06547 hypothetical protein; 98.0 4.3E-05 9.4E-10 75.8 10.9 30 349-378 13-42 (172)
151 PRK04182 cytidylate kinase; Pr 98.0 7.4E-06 1.6E-10 79.9 5.3 28 352-379 1-28 (180)
152 PRK15453 phosphoribulokinase; 98.0 3.4E-05 7.4E-10 82.0 10.5 43 350-392 4-46 (290)
153 PRK13808 adenylate kinase; Pro 98.0 1.5E-05 3.3E-10 86.6 7.9 147 354-517 3-162 (333)
154 COG0563 Adk Adenylate kinase a 98.0 8.3E-05 1.8E-09 74.2 12.6 141 353-518 2-154 (178)
155 PF00485 PRK: Phosphoribulokin 97.9 7.6E-05 1.6E-09 74.9 11.0 152 353-518 1-179 (194)
156 PF00406 ADK: Adenylate kinase 97.9 9E-05 2E-09 71.1 10.6 128 356-516 1-142 (151)
157 PRK05480 uridine/cytidine kina 97.9 0.00018 3.9E-09 72.8 13.2 39 350-390 5-43 (209)
158 cd02029 PRK_like Phosphoribulo 97.8 4.9E-05 1.1E-09 80.3 8.5 40 353-392 1-40 (277)
159 COG0572 Udk Uridine kinase [Nu 97.8 0.00021 4.5E-09 73.3 11.2 154 349-517 6-180 (218)
160 smart00072 GuKc Guanylate kina 97.7 0.00035 7.6E-09 69.6 12.5 25 351-375 2-26 (184)
161 PF00625 Guanylate_kin: Guanyl 97.7 0.00035 7.5E-09 69.4 12.4 135 351-516 2-157 (183)
162 TIGR01425 SRP54_euk signal rec 97.7 0.00023 5E-09 80.0 12.3 43 349-391 98-140 (429)
163 COG0541 Ffh Signal recognition 97.7 0.00039 8.4E-09 77.3 13.4 45 348-392 97-141 (451)
164 cd01673 dNK Deoxyribonucleosid 97.7 0.00096 2.1E-08 66.4 15.0 25 353-377 1-25 (193)
165 PLN02348 phosphoribulokinase 97.7 0.00021 4.7E-09 79.1 10.8 43 348-390 46-103 (395)
166 PF13238 AAA_18: AAA domain; P 97.7 3.1E-05 6.7E-10 70.9 3.6 22 354-375 1-22 (129)
167 PLN02924 thymidylate kinase 97.6 0.00057 1.2E-08 70.5 11.9 37 349-385 14-50 (220)
168 KOG2134 Polynucleotide kinase 97.6 6.6E-05 1.4E-09 81.7 4.7 103 349-484 267-370 (422)
169 COG2074 2-phosphoglycerate kin 97.6 0.00034 7.4E-09 72.8 9.6 130 346-484 84-232 (299)
170 cd02030 NDUO42 NADH:Ubiquinone 97.6 0.0013 2.9E-08 67.4 13.9 28 353-380 1-28 (219)
171 PRK09270 nucleoside triphospha 97.6 0.0031 6.6E-08 65.1 16.5 43 348-390 30-73 (229)
172 PRK10867 signal recognition pa 97.5 0.00053 1.1E-08 77.4 11.6 44 349-392 98-142 (433)
173 PRK14730 coaE dephospho-CoA ki 97.5 0.00032 6.9E-09 70.9 8.8 34 352-385 2-35 (195)
174 PRK00081 coaE dephospho-CoA ki 97.5 0.00026 5.7E-09 71.2 8.0 35 352-392 3-37 (194)
175 PRK00771 signal recognition pa 97.5 0.00048 1E-08 77.8 10.9 44 349-392 93-136 (437)
176 PTZ00301 uridine kinase; Provi 97.5 0.0013 2.8E-08 67.4 13.0 156 351-518 3-180 (210)
177 COG4185 Uncharacterized protei 97.5 0.002 4.4E-08 63.0 13.3 148 351-518 2-150 (187)
178 PRK07933 thymidylate kinase; V 97.5 0.0084 1.8E-07 61.5 18.8 34 352-385 1-34 (213)
179 TIGR00064 ftsY signal recognit 97.5 0.00086 1.9E-08 71.3 11.6 44 349-392 70-113 (272)
180 PF00448 SRP54: SRP54-type pro 97.5 0.00082 1.8E-08 68.1 10.7 42 351-392 1-42 (196)
181 cd02023 UMPK Uridine monophosp 97.4 0.0023 4.9E-08 64.2 13.6 37 353-391 1-37 (198)
182 KOG0780 Signal recognition par 97.4 0.00066 1.4E-08 74.3 10.1 106 344-455 94-205 (483)
183 COG0194 Gmk Guanylate kinase [ 97.4 0.0025 5.4E-08 63.9 13.0 114 350-484 3-137 (191)
184 PRK13974 thymidylate kinase; P 97.4 0.0037 8E-08 63.8 14.8 29 351-379 3-31 (212)
185 KOG3079 Uridylate kinase/adeny 97.4 0.0045 9.7E-08 61.9 14.4 144 349-516 6-161 (195)
186 PRK13477 bifunctional pantoate 97.4 0.00028 6.1E-09 81.0 6.9 36 350-385 283-318 (512)
187 TIGR00959 ffh signal recogniti 97.4 0.0012 2.6E-08 74.6 11.3 44 349-392 97-141 (428)
188 TIGR00152 dephospho-CoA kinase 97.3 0.00059 1.3E-08 68.0 7.9 35 353-392 1-35 (188)
189 PRK14974 cell division protein 97.3 0.0013 2.7E-08 72.1 10.9 44 349-392 138-181 (336)
190 PF02223 Thymidylate_kin: Thym 97.3 0.021 4.5E-07 56.6 18.7 26 356-381 1-26 (186)
191 cd02025 PanK Pantothenate kina 97.3 0.0043 9.2E-08 64.0 13.8 38 353-390 1-40 (220)
192 PRK13976 thymidylate kinase; P 97.3 0.0092 2E-07 61.1 16.0 28 352-379 1-29 (209)
193 TIGR00235 udk uridine kinase. 97.3 0.0059 1.3E-07 61.9 14.4 39 350-390 5-43 (207)
194 PLN02842 nucleotide kinase 97.3 0.0031 6.8E-08 72.2 13.6 26 355-380 1-26 (505)
195 cd03115 SRP The signal recogni 97.3 0.0037 8E-08 61.2 12.5 40 353-392 2-41 (173)
196 PLN02165 adenylate isopentenyl 97.2 0.0024 5.1E-08 69.7 11.8 35 349-383 41-75 (334)
197 COG0125 Tmk Thymidylate kinase 97.2 0.017 3.7E-07 59.2 17.2 36 350-385 2-37 (208)
198 cd02019 NK Nucleoside/nucleoti 97.2 0.00046 1E-08 58.0 4.4 31 353-385 1-31 (69)
199 COG2019 AdkA Archaeal adenylat 97.2 0.0039 8.4E-08 61.5 11.4 36 351-390 4-39 (189)
200 COG3896 Chloramphenicol 3-O-ph 97.2 0.0023 5.1E-08 62.4 9.6 135 350-491 22-169 (205)
201 PRK10416 signal recognition pa 97.2 0.0028 6.1E-08 69.0 11.4 43 349-391 112-154 (318)
202 cd02022 DPCK Dephospho-coenzym 97.1 0.00094 2E-08 66.2 6.7 34 353-392 1-34 (179)
203 cd02024 NRK1 Nicotinamide ribo 97.1 0.0012 2.6E-08 66.5 7.3 34 353-390 1-34 (187)
204 COG0237 CoaE Dephospho-CoA kin 97.1 0.0032 6.9E-08 64.2 10.3 36 351-392 2-37 (201)
205 PRK07429 phosphoribulokinase; 97.1 0.0077 1.7E-07 65.8 13.9 41 348-390 5-45 (327)
206 PRK00023 cmk cytidylate kinase 97.1 0.0028 6.1E-08 65.5 10.0 35 351-385 4-38 (225)
207 cd07061 HP_HAP_like Histidine 97.0 0.00095 2E-08 69.0 6.0 57 561-626 5-69 (242)
208 PRK14733 coaE dephospho-CoA ki 97.0 0.0011 2.3E-08 67.8 6.1 36 350-385 5-40 (204)
209 COG1428 Deoxynucleoside kinase 97.0 0.0094 2E-07 60.9 12.6 26 351-376 4-29 (216)
210 PF00004 AAA: ATPase family as 97.0 0.004 8.7E-08 57.1 9.2 34 354-390 1-34 (132)
211 cd00071 GMPK Guanosine monopho 96.9 0.0014 3E-08 62.4 5.8 24 353-376 1-24 (137)
212 PRK09169 hypothetical protein; 96.9 0.0021 4.5E-08 82.6 8.5 139 351-512 2110-2256(2316)
213 PHA00729 NTP-binding motif con 96.9 0.0063 1.4E-07 63.1 10.6 26 351-376 17-42 (226)
214 PRK09435 membrane ATPase/prote 96.9 0.0046 1E-07 67.6 10.1 42 348-389 53-94 (332)
215 PRK14731 coaE dephospho-CoA ki 96.9 0.0074 1.6E-07 61.5 10.7 33 350-383 4-36 (208)
216 TIGR00017 cmk cytidylate kinas 96.8 0.018 3.9E-07 59.3 13.4 33 351-383 2-34 (217)
217 KOG4622 Predicted nucleotide k 96.8 0.0061 1.3E-07 61.3 9.3 121 353-479 3-140 (291)
218 PHA03132 thymidine kinase; Pro 96.8 0.093 2E-06 61.3 20.3 25 351-375 257-281 (580)
219 PLN02318 phosphoribulokinase/u 96.8 0.011 2.4E-07 68.8 12.6 41 347-391 61-101 (656)
220 PRK14490 putative bifunctional 96.8 0.0021 4.7E-08 71.1 6.4 35 350-385 4-38 (369)
221 PLN02772 guanylate kinase 96.7 0.014 3.1E-07 64.9 12.4 27 350-376 134-160 (398)
222 cd01120 RecA-like_NTPases RecA 96.7 0.01 2.3E-07 55.8 9.6 38 353-390 1-38 (165)
223 PRK11889 flhF flagellar biosyn 96.7 0.0088 1.9E-07 66.8 10.3 43 349-391 239-281 (436)
224 PF06309 Torsin: Torsin; Inte 96.7 0.0085 1.8E-07 56.7 8.6 48 338-385 40-87 (127)
225 KOG3347 Predicted nucleotide k 96.7 0.011 2.3E-07 57.5 9.4 35 353-392 9-43 (176)
226 cd02026 PRK Phosphoribulokinas 96.7 0.012 2.6E-07 62.8 10.8 36 353-390 1-36 (273)
227 PF03668 ATP_bind_2: P-loop AT 96.7 0.026 5.6E-07 60.3 13.1 119 353-506 3-125 (284)
228 smart00382 AAA ATPases associa 96.7 0.0046 9.9E-08 55.7 6.6 37 351-387 2-38 (148)
229 PRK05439 pantothenate kinase; 96.6 0.0026 5.7E-08 68.9 5.7 43 348-390 83-127 (311)
230 PF01121 CoaE: Dephospho-CoA k 96.6 0.011 2.4E-07 59.1 9.2 133 352-511 1-160 (180)
231 COG0552 FtsY Signal recognitio 96.5 0.021 4.5E-07 62.1 11.6 91 348-466 136-228 (340)
232 KOG3220 Similar to bacterial d 96.5 0.029 6.4E-07 56.9 11.6 116 352-482 2-146 (225)
233 PRK12724 flagellar biosynthesi 96.4 0.014 3E-07 65.7 9.8 43 350-392 222-265 (432)
234 PRK03333 coaE dephospho-CoA ki 96.4 0.0046 1E-07 69.2 6.1 30 353-383 3-32 (395)
235 PLN02840 tRNA dimethylallyltra 96.4 0.0054 1.2E-07 68.9 6.5 92 349-445 19-122 (421)
236 PRK14732 coaE dephospho-CoA ki 96.4 0.014 3.1E-07 59.1 8.8 34 353-392 1-34 (196)
237 COG1936 Predicted nucleotide k 96.3 0.019 4.1E-07 57.0 8.9 25 352-377 1-25 (180)
238 PRK12726 flagellar biosynthesi 96.3 0.02 4.2E-07 63.8 9.8 43 350-392 205-247 (407)
239 COG1618 Predicted nucleotide k 96.3 0.019 4.1E-07 56.6 8.6 110 351-464 5-135 (179)
240 KOG1533 Predicted GTPase [Gene 96.3 0.036 7.9E-07 57.5 11.0 116 351-473 2-146 (290)
241 TIGR03709 PPK2_rel_1 polyphosp 96.2 0.044 9.4E-07 58.2 11.7 112 349-488 54-186 (264)
242 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.028 6.1E-07 57.0 10.1 39 350-388 37-75 (226)
243 PRK00091 miaA tRNA delta(2)-is 96.2 0.0093 2E-07 64.6 6.8 34 350-383 3-36 (307)
244 CHL00181 cbbX CbbX; Provisiona 96.2 0.12 2.7E-06 55.4 15.3 31 350-380 58-88 (287)
245 PLN02422 dephospho-CoA kinase 96.2 0.056 1.2E-06 56.4 12.1 32 353-390 3-34 (232)
246 PRK13768 GTPase; Provisional 96.2 0.011 2.4E-07 62.1 7.1 39 351-389 2-40 (253)
247 cd00009 AAA The AAA+ (ATPases 96.2 0.021 4.5E-07 52.1 8.0 37 351-387 19-55 (151)
248 KOG3877 NADH:ubiquinone oxidor 96.2 0.16 3.6E-06 53.8 15.3 43 338-380 58-100 (393)
249 PRK14734 coaE dephospho-CoA ki 96.2 0.016 3.4E-07 58.9 7.8 35 352-392 2-36 (200)
250 PRK09361 radB DNA repair and r 96.1 0.074 1.6E-06 54.3 12.7 40 349-388 21-60 (225)
251 PTZ00451 dephospho-CoA kinase; 96.1 0.038 8.2E-07 58.1 10.5 32 352-383 2-33 (244)
252 PLN02796 D-glycerate 3-kinase 96.1 0.007 1.5E-07 66.4 5.1 42 349-390 98-139 (347)
253 PRK05800 cobU adenosylcobinami 96.1 0.0098 2.1E-07 59.0 5.7 24 353-376 3-26 (170)
254 cd00984 DnaB_C DnaB helicase C 96.0 0.083 1.8E-06 54.3 12.6 141 350-514 12-163 (242)
255 TIGR02237 recomb_radB DNA repa 96.0 0.062 1.3E-06 54.1 11.4 39 349-387 10-48 (209)
256 PRK09518 bifunctional cytidyla 96.0 0.059 1.3E-06 64.9 13.0 33 353-385 3-35 (712)
257 TIGR01618 phage_P_loop phage n 96.0 0.04 8.8E-07 57.0 10.0 23 350-372 11-33 (220)
258 PRK14956 DNA polymerase III su 96.0 0.078 1.7E-06 60.7 13.0 151 351-508 40-194 (484)
259 TIGR03707 PPK2_P_aer polyphosp 96.0 0.1 2.2E-06 54.4 12.8 110 349-484 29-158 (230)
260 PF05496 RuvB_N: Holliday junc 96.0 0.024 5.1E-07 58.8 7.9 32 353-387 52-83 (233)
261 TIGR02881 spore_V_K stage V sp 96.0 0.068 1.5E-06 56.2 11.7 30 350-379 41-70 (261)
262 PRK11860 bifunctional 3-phosph 96.0 0.057 1.2E-06 64.5 12.4 35 351-385 442-476 (661)
263 PF13521 AAA_28: AAA domain; P 95.9 0.026 5.6E-07 54.7 7.8 21 354-374 2-22 (163)
264 TIGR03708 poly_P_AMP_trns poly 95.9 0.074 1.6E-06 61.1 12.6 113 348-487 37-169 (493)
265 PLN03046 D-glycerate 3-kinase; 95.9 0.0097 2.1E-07 66.7 5.3 43 348-390 209-251 (460)
266 PRK12323 DNA polymerase III su 95.9 0.089 1.9E-06 62.2 13.3 28 350-377 37-64 (700)
267 PRK12377 putative replication 95.9 0.048 1E-06 57.4 10.2 41 352-392 102-142 (248)
268 PRK14960 DNA polymerase III su 95.9 0.11 2.3E-06 61.7 13.9 27 351-377 37-63 (702)
269 PRK08084 DNA replication initi 95.9 0.13 2.9E-06 53.3 13.5 37 353-389 47-83 (235)
270 TIGR03499 FlhF flagellar biosy 95.9 0.0099 2.2E-07 63.5 5.2 42 350-391 193-236 (282)
271 KOG3308 Uncharacterized protei 95.9 0.013 2.7E-07 59.5 5.4 36 351-390 4-39 (225)
272 TIGR00554 panK_bact pantothena 95.9 0.011 2.3E-07 63.6 5.3 43 348-390 59-103 (290)
273 cd02861 E_set_proteins_like E 95.9 0.025 5.3E-07 49.1 6.6 54 32-96 3-56 (82)
274 PF13173 AAA_14: AAA domain 95.9 0.061 1.3E-06 50.2 9.8 83 352-457 3-85 (128)
275 cd01394 radB RadB. The archaea 95.9 0.097 2.1E-06 53.1 12.0 37 350-386 18-54 (218)
276 PRK10751 molybdopterin-guanine 95.8 0.013 2.8E-07 58.4 5.3 36 350-385 5-40 (173)
277 PRK07003 DNA polymerase III su 95.8 0.059 1.3E-06 64.5 11.5 27 351-377 38-64 (830)
278 PRK05973 replicative DNA helic 95.8 0.0097 2.1E-07 62.2 4.5 39 350-388 63-101 (237)
279 PLN02748 tRNA dimethylallyltra 95.8 0.014 3E-07 66.6 6.0 92 349-445 20-123 (468)
280 PRK14955 DNA polymerase III su 95.8 0.11 2.5E-06 58.1 13.1 28 350-377 37-64 (397)
281 PRK06893 DNA replication initi 95.8 0.11 2.4E-06 53.7 12.1 35 353-387 41-75 (229)
282 PF13401 AAA_22: AAA domain; P 95.7 0.034 7.3E-07 51.2 7.4 38 350-387 3-45 (131)
283 PRK12723 flagellar biosynthesi 95.7 0.071 1.5E-06 59.7 11.2 44 349-392 172-219 (388)
284 KOG0738 AAA+-type ATPase [Post 95.7 0.058 1.2E-06 59.7 10.0 90 315-421 212-302 (491)
285 PRK08727 hypothetical protein; 95.7 0.13 2.8E-06 53.4 12.3 36 353-388 43-78 (233)
286 TIGR02880 cbbX_cfxQ probable R 95.7 0.068 1.5E-06 57.2 10.5 30 351-380 58-87 (284)
287 KOG1532 GTPase XAB1, interacts 95.7 0.046 1E-06 57.9 8.8 44 347-390 15-58 (366)
288 PRK14722 flhF flagellar biosyn 95.7 0.082 1.8E-06 58.9 11.4 43 349-391 135-179 (374)
289 PF03029 ATP_bind_1: Conserved 95.7 0.01 2.3E-07 61.9 4.1 34 356-389 1-34 (238)
290 TIGR00176 mobB molybdopterin-g 95.6 0.013 2.9E-07 57.1 4.4 33 353-385 1-33 (155)
291 PRK09087 hypothetical protein; 95.6 0.095 2.1E-06 54.3 10.9 112 353-484 46-167 (226)
292 PLN03025 replication factor C 95.6 0.1 2.2E-06 56.6 11.7 23 354-376 37-59 (319)
293 PF00328 His_Phos_2: Histidine 95.6 0.026 5.7E-07 60.2 7.0 44 583-626 62-112 (347)
294 smart00763 AAA_PrkA PrkA AAA d 95.6 0.012 2.5E-07 65.0 4.1 30 348-377 75-104 (361)
295 cd01122 GP4d_helicase GP4d_hel 95.6 0.11 2.4E-06 54.5 11.4 111 350-466 29-147 (271)
296 cd01124 KaiC KaiC is a circadi 95.6 0.12 2.7E-06 50.5 11.1 35 353-387 1-35 (187)
297 PRK04296 thymidine kinase; Pro 95.5 0.057 1.2E-06 54.3 8.8 36 351-386 2-37 (190)
298 PRK07952 DNA replication prote 95.5 0.12 2.6E-06 54.3 11.4 39 352-390 100-138 (244)
299 PRK13695 putative NTPase; Prov 95.5 0.15 3.2E-06 50.2 11.5 29 353-381 2-30 (174)
300 PRK05642 DNA replication initi 95.5 0.096 2.1E-06 54.4 10.7 39 352-390 46-84 (234)
301 PRK04195 replication factor C 95.5 0.054 1.2E-06 62.2 9.6 38 351-391 39-76 (482)
302 PRK08116 hypothetical protein; 95.5 0.07 1.5E-06 56.7 9.5 40 351-390 114-153 (268)
303 COG1660 Predicted P-loop-conta 95.4 0.22 4.7E-06 52.6 12.7 24 353-377 3-26 (286)
304 PRK14949 DNA polymerase III su 95.4 0.13 2.8E-06 62.8 12.6 28 350-377 37-64 (944)
305 cd01983 Fer4_NifH The Fer4_Nif 95.4 0.02 4.3E-07 49.1 4.4 34 353-386 1-34 (99)
306 PRK08181 transposase; Validate 95.4 0.088 1.9E-06 56.1 10.1 39 352-390 107-145 (269)
307 PRK08099 bifunctional DNA-bind 95.4 0.051 1.1E-06 61.0 8.6 29 350-378 218-246 (399)
308 cd02034 CooC The accessory pro 95.4 0.023 5E-07 52.8 4.9 35 354-388 2-36 (116)
309 PRK05703 flhF flagellar biosyn 95.4 0.14 2.9E-06 58.1 11.9 42 351-392 221-264 (424)
310 TIGR00174 miaA tRNA isopenteny 95.4 0.016 3.5E-07 62.2 4.3 30 353-382 1-30 (287)
311 PRK06645 DNA polymerase III su 95.3 0.14 3E-06 59.3 12.1 27 351-377 43-69 (507)
312 cd03116 MobB Molybdenum is an 95.3 0.024 5.1E-07 55.7 5.1 34 352-385 2-35 (159)
313 PRK13342 recombination factor 95.3 0.2 4.3E-06 56.4 13.1 24 353-376 38-61 (413)
314 TIGR00750 lao LAO/AO transport 95.3 0.025 5.4E-07 60.9 5.5 42 349-390 32-73 (300)
315 cd04163 Era Era subfamily. Er 95.3 0.32 7E-06 45.3 12.5 24 351-374 3-26 (168)
316 COG3709 Uncharacterized compon 95.3 0.18 4E-06 49.8 10.7 120 351-485 5-138 (192)
317 PRK14961 DNA polymerase III su 95.2 0.21 4.5E-06 55.3 12.6 27 350-376 37-63 (363)
318 PHA02544 44 clamp loader, smal 95.2 0.48 1E-05 50.8 15.1 28 349-376 41-68 (316)
319 PF03796 DnaB_C: DnaB-like hel 95.2 0.14 2.9E-06 53.8 10.5 108 350-467 18-138 (259)
320 PLN00020 ribulose bisphosphate 95.2 0.092 2E-06 58.2 9.4 62 348-422 145-206 (413)
321 PF13481 AAA_25: AAA domain; P 95.2 0.2 4.4E-06 49.4 11.2 26 351-376 32-57 (193)
322 PRK14957 DNA polymerase III su 95.2 0.23 5E-06 58.0 13.2 27 350-376 37-63 (546)
323 PRK14962 DNA polymerase III su 95.1 0.15 3.3E-06 58.5 11.3 28 350-377 35-62 (472)
324 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.14 3.1E-06 53.1 10.2 38 350-387 20-57 (237)
325 PRK14959 DNA polymerase III su 95.1 0.24 5.1E-06 58.6 13.0 27 351-377 38-64 (624)
326 PF07728 AAA_5: AAA domain (dy 95.1 0.03 6.5E-07 52.6 4.7 23 354-376 2-24 (139)
327 PRK07764 DNA polymerase III su 95.1 0.16 3.4E-06 62.1 12.0 27 350-376 36-62 (824)
328 TIGR00150 HI0065_YjeE ATPase, 95.1 0.021 4.5E-07 54.6 3.6 29 350-378 21-49 (133)
329 KOG0730 AAA+-type ATPase [Post 95.0 0.085 1.8E-06 61.7 9.0 30 349-378 466-495 (693)
330 COG5324 Uncharacterized conser 95.0 0.11 2.3E-06 58.6 9.4 146 350-527 373-528 (758)
331 PF03205 MobB: Molybdopterin g 95.0 0.033 7.2E-07 53.4 4.9 33 353-385 2-34 (140)
332 PRK06731 flhF flagellar biosyn 95.0 0.3 6.5E-06 52.1 12.4 42 350-391 74-115 (270)
333 PF00931 NB-ARC: NB-ARC domain 95.0 0.18 3.9E-06 52.9 10.8 28 349-376 17-44 (287)
334 PF13189 Cytidylate_kin2: Cyti 94.9 0.21 4.6E-06 49.7 10.6 28 353-380 1-28 (179)
335 COG0283 Cmk Cytidylate kinase 94.9 0.02 4.4E-07 58.7 3.4 37 352-392 5-41 (222)
336 KOG0744 AAA+-type ATPase [Post 94.9 0.029 6.4E-07 60.6 4.6 27 350-376 176-202 (423)
337 TIGR03600 phage_DnaB phage rep 94.9 0.3 6.5E-06 55.0 12.9 110 349-467 192-313 (421)
338 cd01131 PilT Pilus retraction 94.9 0.24 5.1E-06 50.1 10.9 25 353-377 3-27 (198)
339 KOG1969 DNA replication checkp 94.9 0.027 5.8E-07 66.3 4.5 42 348-392 323-364 (877)
340 cd03246 ABCC_Protease_Secretio 94.9 0.21 4.6E-06 49.0 10.3 26 351-376 28-53 (173)
341 PRK06620 hypothetical protein; 94.8 0.15 3.2E-06 52.4 9.4 25 352-376 45-69 (214)
342 PF05729 NACHT: NACHT domain 94.8 0.026 5.5E-07 53.6 3.6 27 353-379 2-28 (166)
343 PRK06921 hypothetical protein; 94.8 0.31 6.7E-06 51.8 12.0 37 351-387 117-154 (266)
344 PRK09183 transposase/IS protei 94.8 0.16 3.6E-06 53.6 9.9 40 351-390 102-141 (259)
345 PRK14494 putative molybdopteri 94.8 0.052 1.1E-06 56.5 6.0 34 352-385 2-35 (229)
346 PRK12727 flagellar biosynthesi 94.8 0.29 6.2E-06 56.8 12.4 42 350-391 349-392 (559)
347 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.3 6.5E-06 51.5 11.8 38 350-387 35-72 (259)
348 PRK05896 DNA polymerase III su 94.7 0.36 7.8E-06 56.9 13.2 27 350-376 37-63 (605)
349 PRK04328 hypothetical protein; 94.7 0.18 4E-06 52.8 10.0 38 350-387 22-59 (249)
350 PRK07994 DNA polymerase III su 94.7 0.27 5.9E-06 58.4 12.4 27 351-377 38-64 (647)
351 PRK06526 transposase; Provisio 94.7 0.13 2.8E-06 54.3 8.8 37 351-387 98-134 (254)
352 PRK14965 DNA polymerase III su 94.7 0.47 1E-05 55.9 14.3 27 350-376 37-63 (576)
353 cd03114 ArgK-like The function 94.7 0.039 8.5E-07 53.4 4.5 36 353-388 1-36 (148)
354 cd04169 RF3 RF3 subfamily. Pe 94.7 0.36 7.8E-06 51.3 12.1 24 353-376 4-27 (267)
355 TIGR00390 hslU ATP-dependent p 94.7 0.064 1.4E-06 60.4 6.7 34 350-383 46-79 (441)
356 PRK08691 DNA polymerase III su 94.6 0.34 7.3E-06 57.9 12.8 28 350-377 37-64 (709)
357 PRK13886 conjugal transfer pro 94.6 0.31 6.7E-06 51.2 11.3 110 351-469 3-123 (241)
358 TIGR00665 DnaB replicative DNA 94.6 0.41 8.8E-06 54.1 13.2 108 350-466 194-312 (434)
359 PRK11331 5-methylcytosine-spec 94.6 0.074 1.6E-06 60.4 7.0 27 351-377 194-220 (459)
360 PF07724 AAA_2: AAA domain (Cd 94.5 0.07 1.5E-06 53.0 6.0 40 351-390 3-43 (171)
361 PRK08939 primosomal protein Dn 94.5 0.22 4.8E-06 54.0 10.3 107 351-479 156-269 (306)
362 PF01695 IstB_IS21: IstB-like 94.5 0.05 1.1E-06 54.3 4.9 42 351-392 47-88 (178)
363 COG2256 MGS1 ATPase related to 94.5 0.045 9.7E-07 60.8 4.9 41 353-393 50-92 (436)
364 PRK08903 DnaA regulatory inact 94.5 0.049 1.1E-06 55.8 4.9 37 351-387 42-78 (227)
365 PRK14951 DNA polymerase III su 94.5 0.41 8.9E-06 56.7 13.1 28 350-377 37-64 (618)
366 COG1341 Predicted GTPase or GT 94.5 0.23 5E-06 55.3 10.3 41 348-388 70-110 (398)
367 TIGR02397 dnaX_nterm DNA polym 94.4 0.41 8.9E-06 52.1 12.3 27 350-376 35-61 (355)
368 PRK00149 dnaA chromosomal repl 94.4 0.41 8.9E-06 54.5 12.7 38 353-390 150-189 (450)
369 PRK14958 DNA polymerase III su 94.4 0.37 8E-06 55.9 12.4 28 350-377 37-64 (509)
370 PRK00440 rfc replication facto 94.4 0.27 5.8E-06 52.4 10.5 25 354-378 41-65 (319)
371 PF03976 PPK2: Polyphosphate k 94.3 0.048 1E-06 56.7 4.5 112 350-488 30-161 (228)
372 KOG2170 ATPase of the AAA+ sup 94.3 0.042 9.2E-07 58.9 4.1 41 345-385 104-144 (344)
373 PRK05636 replicative DNA helic 94.3 0.33 7.2E-06 56.2 11.8 109 349-466 263-382 (505)
374 PF00910 RNA_helicase: RNA hel 94.3 0.033 7.1E-07 50.7 2.9 24 354-377 1-24 (107)
375 TIGR01650 PD_CobS cobaltochela 94.3 0.036 7.8E-07 60.5 3.6 29 353-381 66-94 (327)
376 PRK05342 clpX ATP-dependent pr 94.3 0.068 1.5E-06 60.3 5.9 28 352-379 109-136 (412)
377 PTZ00361 26 proteosome regulat 94.3 1.1 2.4E-05 51.0 15.5 29 350-378 216-244 (438)
378 TIGR02012 tigrfam_recA protein 94.3 0.22 4.8E-06 54.4 9.5 38 350-387 54-91 (321)
379 cd01895 EngA2 EngA2 subfamily. 94.2 0.12 2.7E-06 48.8 6.8 24 351-374 2-25 (174)
380 cd02037 MRP-like MRP (Multiple 94.2 0.093 2E-06 51.2 6.0 37 353-389 2-38 (169)
381 PRK11823 DNA repair protein Ra 94.2 0.39 8.5E-06 54.8 11.8 47 341-387 70-116 (446)
382 COG1484 DnaC DNA replication p 94.2 0.21 4.6E-06 52.7 9.0 86 350-455 104-192 (254)
383 cd02859 AMPKbeta_GBD_like AMP- 94.2 0.13 2.9E-06 44.5 6.2 52 33-96 4-55 (79)
384 COG1132 MdlB ABC-type multidru 94.1 0.15 3.2E-06 59.6 8.5 111 351-466 355-490 (567)
385 TIGR00635 ruvB Holliday juncti 94.1 0.41 8.9E-06 51.1 11.3 25 352-376 31-55 (305)
386 PRK03992 proteasome-activating 94.1 0.16 3.4E-06 56.9 8.4 28 350-377 164-191 (389)
387 PHA02575 1 deoxynucleoside mon 94.1 0.034 7.4E-07 57.6 2.8 23 352-374 1-23 (227)
388 TIGR03015 pepcterm_ATPase puta 94.1 1.1 2.4E-05 46.6 14.3 26 351-376 43-68 (269)
389 PF03266 NTPase_1: NTPase; In 94.1 0.051 1.1E-06 53.8 3.9 25 354-378 2-26 (168)
390 COG4615 PvdE ABC-type sideroph 94.1 0.094 2E-06 58.3 6.2 49 349-397 347-402 (546)
391 PF13191 AAA_16: AAA ATPase do 94.1 0.046 1E-06 53.1 3.6 31 348-378 21-51 (185)
392 TIGR03598 GTPase_YsxC ribosome 94.1 0.7 1.5E-05 45.3 11.9 26 349-374 16-41 (179)
393 PRK05201 hslU ATP-dependent pr 94.1 0.12 2.6E-06 58.3 7.2 33 351-383 50-82 (443)
394 PRK14723 flhF flagellar biosyn 94.1 0.32 7E-06 58.6 11.2 42 350-391 184-227 (767)
395 TIGR01241 FtsH_fam ATP-depende 94.0 0.61 1.3E-05 53.8 13.2 27 350-376 87-113 (495)
396 KOG0734 AAA+-type ATPase conta 94.0 0.091 2E-06 60.1 6.2 259 349-626 335-652 (752)
397 COG4240 Predicted kinase [Gene 94.0 0.079 1.7E-06 54.9 5.2 43 348-390 47-90 (300)
398 PRK13341 recombination factor 94.0 0.67 1.5E-05 56.0 13.9 24 353-376 54-77 (725)
399 COG4175 ProV ABC-type proline/ 94.0 0.21 4.5E-06 54.2 8.5 26 350-375 53-78 (386)
400 cd01121 Sms Sms (bacterial rad 94.0 0.16 3.5E-06 56.6 8.0 48 341-388 72-119 (372)
401 cd00878 Arf_Arl Arf (ADP-ribos 94.0 0.087 1.9E-06 49.9 5.2 21 354-374 2-22 (158)
402 cd00154 Rab Rab family. Rab G 94.0 0.074 1.6E-06 49.3 4.7 21 354-374 3-23 (159)
403 PRK06321 replicative DNA helic 94.0 0.57 1.2E-05 53.9 12.6 116 341-466 217-343 (472)
404 PRK14964 DNA polymerase III su 94.0 0.49 1.1E-05 54.6 12.0 26 351-376 35-60 (491)
405 smart00178 SAR Sar1p-like memb 93.9 0.38 8.1E-06 47.6 9.8 24 350-373 16-39 (184)
406 PRK08760 replicative DNA helic 93.9 0.49 1.1E-05 54.4 12.0 109 349-466 227-346 (476)
407 PRK08533 flagellar accessory p 93.9 0.5 1.1E-05 49.0 11.0 36 351-386 24-59 (230)
408 PF01745 IPT: Isopentenyl tran 93.8 0.17 3.7E-06 52.1 7.2 124 352-484 2-140 (233)
409 cd04156 ARLTS1 ARLTS1 subfamil 93.8 0.078 1.7E-06 50.3 4.6 21 354-374 2-22 (160)
410 cd00983 recA RecA is a bacter 93.8 0.43 9.4E-06 52.2 10.8 38 350-387 54-91 (325)
411 PRK12269 bifunctional cytidyla 93.8 0.033 7.1E-07 68.0 2.3 32 351-382 34-65 (863)
412 PRK14088 dnaA chromosomal repl 93.8 1.4 2.9E-05 50.3 15.1 37 354-390 133-171 (440)
413 PRK05595 replicative DNA helic 93.7 0.65 1.4E-05 52.9 12.5 109 349-466 199-318 (444)
414 COG0470 HolB ATPase involved i 93.7 0.32 7E-06 51.8 9.5 27 350-376 23-49 (325)
415 cd00881 GTP_translation_factor 93.7 0.49 1.1E-05 45.7 10.0 23 354-376 2-24 (189)
416 PRK08006 replicative DNA helic 93.7 0.79 1.7E-05 52.7 13.1 109 350-466 223-343 (471)
417 cd01393 recA_like RecA is a b 93.7 0.49 1.1E-05 48.1 10.4 27 350-376 18-44 (226)
418 PF13245 AAA_19: Part of AAA d 93.7 0.11 2.5E-06 44.6 4.8 25 352-376 11-35 (76)
419 PRK09165 replicative DNA helic 93.6 0.74 1.6E-05 53.3 12.9 116 341-466 208-348 (497)
420 TIGR00416 sms DNA repair prote 93.6 0.15 3.3E-06 58.2 7.2 47 341-387 84-130 (454)
421 cd04139 RalA_RalB RalA/RalB su 93.6 0.055 1.2E-06 51.1 3.1 21 353-373 2-22 (164)
422 KOG0742 AAA+-type ATPase [Post 93.6 0.69 1.5E-05 51.7 11.8 170 259-455 274-475 (630)
423 cd01887 IF2_eIF5B IF2/eIF5B (i 93.6 0.33 7.2E-06 46.1 8.6 22 353-374 2-23 (168)
424 PF02492 cobW: CobW/HypB/UreG, 93.6 0.094 2E-06 52.0 4.8 32 353-385 2-33 (178)
425 PRK12402 replication factor C 93.6 0.53 1.2E-05 50.6 11.0 38 353-390 38-77 (337)
426 PTZ00454 26S protease regulato 93.6 0.23 5E-06 55.8 8.4 28 350-377 178-205 (398)
427 cd03228 ABCC_MRP_Like The MRP 93.6 0.6 1.3E-05 45.7 10.4 26 351-376 28-53 (171)
428 COG3911 Predicted ATPase [Gene 93.5 1.4 3E-05 43.2 12.3 34 350-387 8-41 (183)
429 cd04162 Arl9_Arfrp2_like Arl9/ 93.5 0.16 3.5E-06 49.1 6.2 21 354-374 2-22 (164)
430 TIGR03881 KaiC_arch_4 KaiC dom 93.5 0.6 1.3E-05 47.7 10.7 36 350-385 19-54 (229)
431 PRK14963 DNA polymerase III su 93.5 0.45 9.7E-06 55.2 10.7 28 350-377 35-62 (504)
432 COG1419 FlhF Flagellar GTP-bin 93.5 1.3 2.9E-05 49.7 13.8 42 351-392 203-246 (407)
433 TIGR00362 DnaA chromosomal rep 93.4 0.73 1.6E-05 51.7 12.2 38 353-390 138-177 (405)
434 cd01130 VirB11-like_ATPase Typ 93.4 0.22 4.8E-06 49.7 7.2 121 351-484 25-149 (186)
435 TIGR03689 pup_AAA proteasome A 93.4 0.15 3.3E-06 58.9 6.8 28 351-378 216-243 (512)
436 PRK00411 cdc6 cell division co 93.4 1.8 3.8E-05 48.0 15.1 39 349-387 53-93 (394)
437 PF09848 DUF2075: Uncharacteri 93.4 0.57 1.2E-05 51.6 11.0 25 351-375 1-25 (352)
438 TIGR01243 CDC48 AAA family ATP 93.4 1.2 2.7E-05 53.9 14.8 28 350-377 486-513 (733)
439 cd03230 ABC_DR_subfamily_A Thi 93.4 0.8 1.7E-05 44.9 11.0 26 351-376 26-51 (173)
440 cd02035 ArsA ArsA ATPase funct 93.4 0.089 1.9E-06 53.8 4.3 38 353-390 1-38 (217)
441 PRK14493 putative bifunctional 93.4 0.1 2.2E-06 55.8 4.8 32 353-385 3-34 (274)
442 PRK14969 DNA polymerase III su 93.3 0.66 1.4E-05 54.1 11.9 28 350-377 37-64 (527)
443 PRK08506 replicative DNA helic 93.3 0.71 1.5E-05 53.1 12.0 108 350-466 191-309 (472)
444 PRK06995 flhF flagellar biosyn 93.3 0.096 2.1E-06 60.1 4.9 42 350-391 255-298 (484)
445 PRK05748 replicative DNA helic 93.3 0.87 1.9E-05 51.9 12.6 109 349-466 201-321 (448)
446 PHA02542 41 41 helicase; Provi 93.3 0.8 1.7E-05 52.7 12.3 48 341-388 180-227 (473)
447 PRK14950 DNA polymerase III su 93.3 0.56 1.2E-05 55.3 11.4 27 350-376 37-63 (585)
448 PRK14952 DNA polymerase III su 93.3 1.4 3E-05 52.1 14.4 28 350-377 34-61 (584)
449 PRK14954 DNA polymerase III su 93.2 0.78 1.7E-05 54.5 12.4 28 350-377 37-64 (620)
450 KOG1384 tRNA delta(2)-isopente 93.2 0.46 1E-05 51.7 9.5 126 350-483 6-159 (348)
451 TIGR02782 TrbB_P P-type conjug 93.2 0.59 1.3E-05 50.6 10.5 119 351-482 132-251 (299)
452 PF06745 KaiC: KaiC; InterPro 93.2 0.31 6.7E-06 49.8 8.0 38 350-387 18-56 (226)
453 PRK14086 dnaA chromosomal repl 93.2 1.1 2.4E-05 52.9 13.4 37 354-390 317-355 (617)
454 cd03229 ABC_Class3 This class 93.1 1.1 2.3E-05 44.2 11.5 26 351-376 26-51 (178)
455 TIGR00073 hypB hydrogenase acc 93.1 0.098 2.1E-06 53.0 4.2 28 349-376 20-47 (207)
456 PRK14729 miaA tRNA delta(2)-is 93.1 0.17 3.8E-06 54.7 6.3 86 351-445 4-104 (300)
457 COG4608 AppF ABC-type oligopep 93.1 0.3 6.6E-06 51.8 7.8 27 350-376 38-64 (268)
458 CHL00195 ycf46 Ycf46; Provisio 93.1 0.26 5.7E-06 56.8 8.0 29 350-378 258-286 (489)
459 TIGR00382 clpX endopeptidase C 93.1 0.2 4.3E-06 56.6 6.9 26 351-376 116-141 (413)
460 COG1855 ATPase (PilT family) [ 93.0 0.079 1.7E-06 59.5 3.5 40 346-385 258-297 (604)
461 PRK14489 putative bifunctional 93.0 0.14 3E-06 56.9 5.5 36 350-385 204-239 (366)
462 PF02367 UPF0079: Uncharacteri 93.0 0.11 2.3E-06 49.1 3.9 28 350-377 14-41 (123)
463 PRK10536 hypothetical protein; 93.0 0.94 2E-05 48.1 11.3 22 353-374 76-97 (262)
464 PRK09111 DNA polymerase III su 93.0 0.86 1.9E-05 53.9 12.2 28 350-377 45-72 (598)
465 KOG0733 Nuclear AAA ATPase (VC 92.9 0.28 6.1E-06 57.1 7.8 28 350-377 222-249 (802)
466 smart00173 RAS Ras subfamily o 92.9 0.069 1.5E-06 50.8 2.6 20 354-373 3-22 (164)
467 KOG0781 Signal recognition par 92.9 0.78 1.7E-05 52.2 11.0 49 343-391 370-418 (587)
468 cd03247 ABCC_cytochrome_bd The 92.9 0.88 1.9E-05 44.8 10.5 26 351-376 28-53 (178)
469 cd03213 ABCG_EPDR ABCG transpo 92.9 0.84 1.8E-05 45.8 10.5 26 350-375 34-59 (194)
470 PTZ00369 Ras-like protein; Pro 92.9 0.067 1.5E-06 53.0 2.5 23 351-373 5-27 (189)
471 TIGR03880 KaiC_arch_3 KaiC dom 92.9 0.51 1.1E-05 48.2 9.0 38 350-387 15-52 (224)
472 TIGR01420 pilT_fam pilus retra 92.8 0.81 1.7E-05 50.4 11.1 118 351-480 122-240 (343)
473 PRK06851 hypothetical protein; 92.8 0.14 3E-06 56.9 5.1 36 350-385 29-64 (367)
474 PRK14948 DNA polymerase III su 92.8 0.71 1.5E-05 54.9 11.3 25 353-377 40-64 (620)
475 PRK06305 DNA polymerase III su 92.8 0.77 1.7E-05 52.5 11.3 27 350-376 38-64 (451)
476 COG5192 BMS1 GTP-binding prote 92.8 0.37 7.9E-06 55.4 8.3 92 350-461 68-164 (1077)
477 COG1763 MobB Molybdopterin-gua 92.8 0.14 3.1E-06 50.5 4.6 35 351-385 2-36 (161)
478 TIGR01526 nadR_NMN_Atrans nico 92.8 0.44 9.5E-06 52.1 8.9 26 352-377 163-188 (325)
479 TIGR02868 CydC thiol reductant 92.8 0.19 4.1E-06 58.1 6.3 27 350-376 360-386 (529)
480 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.7 0.95 2.1E-05 43.3 10.2 90 351-460 26-118 (144)
481 PRK12422 chromosomal replicati 92.7 1.4 3E-05 50.4 13.1 35 354-388 144-178 (445)
482 PF04665 Pox_A32: Poxvirus A32 92.7 1.5 3.2E-05 46.1 12.3 30 350-379 12-41 (241)
483 cd03214 ABC_Iron-Siderophores_ 92.7 0.94 2E-05 44.7 10.4 27 350-376 24-50 (180)
484 PRK08840 replicative DNA helic 92.7 1.4 3E-05 50.7 13.1 109 350-466 216-336 (464)
485 cd01876 YihA_EngB The YihA (En 92.7 1.3 2.9E-05 41.3 11.0 19 354-372 2-20 (170)
486 TIGR02640 gas_vesic_GvpN gas v 92.7 0.089 1.9E-06 55.5 3.3 30 353-385 23-52 (262)
487 cd04105 SR_beta Signal recogni 92.7 0.4 8.6E-06 48.6 7.8 22 353-374 2-23 (203)
488 PRK15455 PrkA family serine pr 92.7 0.095 2.1E-06 61.1 3.7 30 349-378 101-130 (644)
489 PF07726 AAA_3: ATPase family 92.6 0.057 1.2E-06 51.4 1.5 24 354-377 2-25 (131)
490 COG1072 CoaA Panthothenate kin 92.6 0.18 3.8E-06 53.7 5.2 40 347-386 78-119 (283)
491 TIGR02655 circ_KaiC circadian 92.6 0.55 1.2E-05 54.1 9.8 47 341-387 253-299 (484)
492 COG1703 ArgK Putative periplas 92.6 0.17 3.6E-06 54.5 5.1 41 348-388 48-88 (323)
493 cd04149 Arf6 Arf6 subfamily. 92.6 0.32 6.9E-06 47.3 6.8 21 352-372 10-30 (168)
494 PRK05707 DNA polymerase III su 92.5 1 2.2E-05 49.4 11.3 29 348-376 19-47 (328)
495 PRK10463 hydrogenase nickel in 92.5 0.16 3.4E-06 54.8 4.8 36 349-385 102-137 (290)
496 cd01891 TypA_BipA TypA (tyrosi 92.5 0.38 8.3E-06 47.8 7.4 22 353-374 4-25 (194)
497 TIGR00101 ureG urease accessor 92.5 0.12 2.6E-06 52.5 3.8 27 351-377 1-27 (199)
498 PF02421 FeoB_N: Ferrous iron 92.4 0.31 6.7E-06 47.9 6.4 105 353-469 2-115 (156)
499 cd03216 ABC_Carb_Monos_I This 92.4 0.72 1.6E-05 45.0 9.1 26 351-376 26-51 (163)
500 PRK07004 replicative DNA helic 92.4 1.1 2.4E-05 51.3 11.9 109 349-466 211-331 (460)
No 1
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-63 Score=533.24 Aligned_cols=352 Identities=55% Similarity=0.913 Sum_probs=332.1
Q ss_pred CCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005233 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (707)
Q Consensus 346 ~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d 425 (707)
-.+..|.+|+|+|||++|||.++.+|.+||.|.++++..||.++|||..........||.+.++++...+.++|..+++|
T Consensus 23 ~~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D 102 (438)
T KOG0234|consen 23 LFMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALND 102 (438)
T ss_pred cccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhh
Confidence 34678999999999999999999999999999999999999999999887766667899999999999999999999999
Q ss_pred HHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHH--cCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 005233 426 MISWMH-EGGQVGIFDATNSSRKRRNMLMKMA--EGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 502 (707)
Q Consensus 426 ~~~~L~-~~G~vVIlDAtn~~~e~R~~l~~l~--~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df 502 (707)
+..|+. .+|+++|+||||.++++|..+..+. +.++++.|||..|+|++++.+||+.++..+|||++. +.+.++++|
T Consensus 103 ~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~-~~e~a~~df 181 (438)
T KOG0234|consen 103 LLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGK-DQEEALKDF 181 (438)
T ss_pred HHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCC-CHHHHHHHH
Confidence 999998 5799999999999999999999993 689999999999999999999999898899999988 999999999
Q ss_pred HHHHHhhhhhccCCCC--C---CeeEEeecccCCccceeeecccccCCcccccccccccCCCceEEEeccccccccCCCC
Q 005233 503 KNRLANYEKVYEPVDE--G---SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGR 577 (707)
Q Consensus 503 ~~Ri~~y~~~yEpl~e--~---~yik~in~~~~~g~~~~~n~i~gyL~~rIvf~L~N~~~~~~~IyLIRHGes~~N~~~~ 577 (707)
++|+..|++.|||+++ + +|||+||+ |+++++|+|.|||++||+|||||+|..+++|||+||||++.|..++
T Consensus 182 l~ri~~ye~~YePld~~~d~~lsyik~in~----g~~~~~~~i~~~l~srivy~lmN~~~~pR~i~l~r~geS~~n~~gr 257 (438)
T KOG0234|consen 182 LKRIRNYEKYYEPLDRARDKDLSYIKIINV----GEEIVVHNIEGYLQSRIVYYLMNIHTTPRTIYLTRHGESEFNVEGR 257 (438)
T ss_pred HHHHHhhhhccCcCChhhccccceEEEecc----cceEEEecccceehhhhhhhhhccccCCceEEEEecCCCccccccc
Confidence 9999999999999993 3 99999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHhcCCCC-CEEEEcCcHHHHHHHHHhcCCC--ccccccccccccCcCCCCCHHHHH
Q 005233 578 IGGDTILSDAGEIYAKKLANFVEKRLKSERA-ASIWTSTLQRTILTASPIAGFP--KIQWRALDEINAGVCDGMTYEEIK 654 (707)
Q Consensus 578 ~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~-d~I~TSPl~RAiQTA~~i~g~~--v~~~~~L~Ei~~G~~eGlt~~ei~ 654 (707)
.+||.+|+++|.++|+.+.+++.+.. .. -.||||++.||+|||+.+ +.+ +.++..|+|++.|.|+|++++++.
T Consensus 258 iggds~ls~~g~~ya~~l~~f~~~~~---~~dl~vwts~~~rti~ta~~l-~~~~~~~~~~~Ldei~ag~~~g~t~eeI~ 333 (438)
T KOG0234|consen 258 IGGDSPLSERGSQYAKSLIKFVEEQS---SSDLDVWTSQRKRTIQTAEGL-KLDYSVEQWKALDEIDAGVCEGLTYEEIE 333 (438)
T ss_pred cCCcccccHHHHHHHHHHHHHHhhhc---ccCceeccchHHHHhhhHhhc-CcchhhhhHhhcCcccccccccccHHHHH
Confidence 99999999999999999999998762 33 489999999999999965 444 478999999999999999999999
Q ss_pred HhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecCC
Q 005233 655 KNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQC 707 (707)
Q Consensus 655 ~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~~~~ILVVSHgg 707 (707)
+.||+++.....++++|+||+||||.|+.+|++++|.+|+++.+ |+||||.+
T Consensus 334 ~~~p~e~~~r~~dky~yry~~gESy~D~v~RlePvImElEr~~~-Vlvi~Hqa 385 (438)
T KOG0234|consen 334 TNYPEEFALRDKDKYRYRYPGGESYSDLVQRLEPVIMELERQEN-VLVITHQA 385 (438)
T ss_pred HhCchhhhhccCCcceeecCCCCCHHHHHHhhhhHhHhhhhccc-EEEEecHH
Confidence 99999999999999999999999999999999999999999887 99999973
No 2
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=100.00 E-value=1.5e-60 Score=556.16 Aligned_cols=343 Identities=29% Similarity=0.547 Sum_probs=301.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
.+++|+|+||||+||||+|++|+++|.|.++++++|+.|+||+.+.+. ...++.+.+.. ....+++..+++++..|
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~--~~~~~~~~~~~--~~e~~~~~~~~~d~~~~ 289 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERR--GGAVSSPTGAA--EVEFRIAKAIAHDMTTF 289 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccC--CCCcCCCCCHH--HHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999976432 22334444443 23356788888889999
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCC----ceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGN----CKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~----~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~ 504 (707)
+.+.|.++|+||||.++.+|..+.++ .+.+ ++++|||++|++.+.+++|+.+++...|+ +++++.++|++
T Consensus 290 v~~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~-----~~e~~~~~~~~ 364 (664)
T PTZ00322 290 ICKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPG-----APEDFVDRYYE 364 (664)
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHH
Confidence 99888899999999999999887766 5544 48999999999999999999888776664 58999999999
Q ss_pred HHHhhhhhccCCCC----C-CeeEEeecccCCccceeeecccccCCcccccccccccCCCceEEEeccccccccCCCCcC
Q 005233 505 RLANYEKVYEPVDE----G-SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIG 579 (707)
Q Consensus 505 Ri~~y~~~yEpl~e----~-~yik~in~~~~~g~~~~~n~i~gyL~~rIvf~L~N~~~~~~~IyLIRHGes~~N~~~~~~ 579 (707)
|++.|++.||+++. + +|||+ +. |++|.+|+|+|||++||+|||||+|+.+|+|||+|||||.||..++++
T Consensus 365 ~~~~~~~~Ye~~~~~~d~~~~~ik~-~~----g~~~~~~~i~g~l~~~i~~~l~n~~~~~m~i~LiRHGeT~~n~~~r~~ 439 (664)
T PTZ00322 365 VIEQLEAVYKSLNPVTDCDLTYIRI-ED----TQTFSLNNISGWMPSRLAYMLHNLNPTPMNLYLTRAGEYVDLLSGRIG 439 (664)
T ss_pred HHHHHHhhcccCCccccCCCceEEE-ec----CcEEEEeccccccchhhheeeeeeccCCceEEEEecccchhhhcCccC
Confidence 99999999999873 2 89996 54 899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc--------------------CCCccccccccc
Q 005233 580 GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------------------GFPKIQWRALDE 639 (707)
Q Consensus 580 GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~--------------------g~~v~~~~~L~E 639 (707)
||.|||+.|++||++++++|.... ...++.|||||++||+|||+++. ++++..+++|+|
T Consensus 440 Gd~pLt~~G~~qA~~l~~~l~~~~-~~~~~~V~sSpl~Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~L~E 518 (664)
T PTZ00322 440 GNSRLTERGRAYSRALFEYFQKEI-STTSFTVMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYFPTLDD 518 (664)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcc-CCCCcEEEcCCcHHHHHHHHHHHhccccccccccccccccccccccccchhhhCc
Confidence 999999999999999999886431 23467999999999999998882 345677899999
Q ss_pred cccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHH-HHHHHHHHHHHcCCCcEEEEecCC
Q 005233 640 INAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVI-QRLEPVIIELERQRAPVVVISHQC 707 (707)
Q Consensus 640 i~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~-~Rv~~~l~eL~~~~~~ILVVSHgg 707 (707)
++||.|||++++++.+.+|+.|..|..+++.+++|+|||+.|+. +|+.+++.++.+..++||||||||
T Consensus 519 i~fG~wEG~t~~ei~~~~p~~~~~~~~d~~~~~~P~GES~~d~~~~R~~~~i~~l~~~~~~ilvVsHg~ 587 (664)
T PTZ00322 519 INHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARLEPHIHDIQASTTPVLVVSHLH 587 (664)
T ss_pred CCCcccCCCCHHHHHHhCcHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHHHHHHHHccCCCEEEEeCcH
Confidence 99999999999999999999999999999999999999999976 799999999987778999999996
No 3
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=100.00 E-value=9.4e-51 Score=413.33 Aligned_cols=212 Identities=56% Similarity=0.955 Sum_probs=170.6
Q ss_pred ccCCC-CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 005233 343 MLGPK-EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAAL 421 (707)
Q Consensus 343 ~~~~~-~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~ 421 (707)
++++. +..|++|+||||||+|||++|++|++||.|.|+++.+||.|+|||...+...+..||++.++++.+.++++|..
T Consensus 3 ~~~~~~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~ 82 (222)
T PF01591_consen 3 ESGRLFHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKE 82 (222)
T ss_dssp ----------EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHH
T ss_pred cccccCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHH
Confidence 44444 67899999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 005233 422 AMEDMISWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 499 (707)
Q Consensus 422 ~l~d~~~~L~-~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~ 499 (707)
+++||++||+ ++|+++|+||||.++++|+.+.+. .+.+++++|||++|+|++++++||+.++..+|||.++ ++++|+
T Consensus 83 ~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~-~~e~A~ 161 (222)
T PF01591_consen 83 ALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGM-DPEEAI 161 (222)
T ss_dssp HHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS--HHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccC-CHHHHH
Confidence 9999999999 779999999999999999999998 8889999999999999999999999999888999999 999999
Q ss_pred HHHHHHHHhhhhhccCCCC---C--CeeEEeecccCCccceeeecccccCCcccccccccccCCC
Q 005233 500 QDFKNRLANYEKVYEPVDE---G--SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTP 559 (707)
Q Consensus 500 ~df~~Ri~~y~~~yEpl~e---~--~yik~in~~~~~g~~~~~n~i~gyL~~rIvf~L~N~~~~~ 559 (707)
+||++|++.|+++||||++ . +|||+||+ |++|++|+|+|||++||+|||||+|++|
T Consensus 162 ~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~----g~~v~~n~i~GyL~srIv~~LmNlh~~P 222 (222)
T PF01591_consen 162 EDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINV----GEKVIVNNISGYLQSRIVFYLMNLHIKP 222 (222)
T ss_dssp HHHHHHHHHHHTT-----TTTTTTSEEEEEETT----TTEEEEE---SHHHHHHHHHHTT---S-
T ss_pred HHHHHHHHhhcccccccccccccCceEEEEEcC----CceEEEecccCEeHHHHHHHHhhcCCCC
Confidence 9999999999999999992 2 99999999 9999999999999999999999999875
No 4
>PRK13463 phosphatase PhoE; Provisional
Probab=99.96 E-value=8.4e-30 Score=257.01 Aligned_cols=145 Identities=26% Similarity=0.428 Sum_probs=134.2
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCccc
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v~~ 633 (707)
+++||||||||+.+|..++++| |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++ .++++.+
T Consensus 2 ~~~i~lvRHG~t~~n~~~~~~G~~d~~Lt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 77 (203)
T PRK13463 2 KTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMK----DLSIHAIYSSPSERTLHTAELIKGERDIPIIA 77 (203)
T ss_pred ceEEEEEeCCCCccchhCcccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHhcCCCCceE
Confidence 3789999999999999999988 99999999999999998775 4579999999999999999998 4678889
Q ss_pred cccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecCC
Q 005233 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQC 707 (707)
Q Consensus 634 ~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~--~~~ILVVSHgg 707 (707)
+++|+|+++|.|+|++..++.+.+|+.+..|+.++..+.+|+|||+.++.+|+..+++++.+. +++||||||||
T Consensus 78 ~~~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~ 153 (203)
T PRK13463 78 DEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAA 153 (203)
T ss_pred CcCceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeChH
Confidence 999999999999999999999999999999999998899999999999999999999998653 56899999996
No 5
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=99.96 E-value=2.1e-29 Score=258.79 Aligned_cols=147 Identities=23% Similarity=0.295 Sum_probs=127.3
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---C---CC
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G---FP 630 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~---g---~~ 630 (707)
|++|||||||||.+|..++++| |.|||+.|++||+++++.|... ..+++.|||||+.||+|||++|. + ++
T Consensus 1 m~~l~LVRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~qTA~~i~~~~~~~~~~ 78 (228)
T PRK14116 1 MAKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEA--GLEFDQAYTSVLTRAIKTLHYALEESDQLWIP 78 (228)
T ss_pred CCEEEEEeCCCCCCccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCcCCCC
Confidence 3689999999999999999999 9999999999999999988742 35799999999999999999982 2 56
Q ss_pred ccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcC------------------------cCCCCCCCCCCHHHHHHH
Q 005233 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKD------------------------KLRYRYPRGESYLDVIQR 685 (707)
Q Consensus 631 v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d------------------------~~~~r~PgGES~~dv~~R 685 (707)
+..+++|+|++||.|+|++++++.+.+|+. +..|..+ ...+.+|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~~~~R 158 (228)
T PRK14116 79 ETKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLER 158 (228)
T ss_pred cccCcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHHHHHHH
Confidence 778899999999999999999999999986 5566543 113468999999999999
Q ss_pred HHHHHHHHHc----CCCcEEEEecCC
Q 005233 686 LEPVIIELER----QRAPVVVISHQC 707 (707)
Q Consensus 686 v~~~l~eL~~----~~~~ILVVSHgg 707 (707)
+..+++++.. .+++||||||||
T Consensus 159 v~~~l~~~i~~~~~~~~~vlvVsHg~ 184 (228)
T PRK14116 159 VIPFWEDHIAPDLLDGKNVIIAAHGN 184 (228)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEcChH
Confidence 9999998642 357899999996
No 6
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=99.96 E-value=1.9e-29 Score=253.19 Aligned_cols=144 Identities=26% Similarity=0.296 Sum_probs=133.1
Q ss_pred ceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccc
Q 005233 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v~~~ 634 (707)
|+||||||||+.+|..++++| |.|||+.|++||+++++.|. ..+++.|||||++||+|||+++ .++++.++
T Consensus 1 ~~i~lvRHG~t~~n~~~~~~G~~d~pLt~~G~~Qa~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (199)
T PRK15004 1 MRLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLR----DVPFDLVLCSELERAQHTARLVLSDRQLPVHII 76 (199)
T ss_pred CeEEEEeCCCCccccCCcEeCCCCCCcCHHHHHHHHHHHHHHh----CCCCCEEEECchHHHHHHHHHHHhcCCCCceeC
Confidence 569999999999999999988 99999999999999998775 4579999999999999999999 56788899
Q ss_pred ccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecCC
Q 005233 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQC 707 (707)
Q Consensus 635 ~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~--~~~ILVVSHgg 707 (707)
++|+|+++|.|+|++..++.+.+|+.|..|..++....+|+|||+.|+.+|+..+++++.+. +++|||||||+
T Consensus 77 ~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~ 151 (199)
T PRK15004 77 PELNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQG 151 (199)
T ss_pred hhheeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcChH
Confidence 99999999999999999999999999999998887788899999999999999999999764 57899999996
No 7
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=99.96 E-value=3.4e-29 Score=257.13 Aligned_cols=147 Identities=24% Similarity=0.285 Sum_probs=126.6
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CCC
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFP 630 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~------g~~ 630 (707)
|++|||||||||.+|..++++| |.|||+.|++||++++++|... ..+++.|||||++||+|||++|. +.+
T Consensus 1 m~~l~LvRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpL~Ra~~TA~~i~~~~~~~~~~ 78 (228)
T PRK14119 1 MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVREN--NIAIDVAFTSLLTRALDTTHYILTESKQQWIP 78 (228)
T ss_pred CCEEEEEeCCCCCcccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCccHHHHHHHHHHHHhcccCCCC
Confidence 4689999999999999999998 9999999999999999988653 35799999999999999999982 257
Q ss_pred ccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcC------------------------CCCCCCCCCHHHHHHH
Q 005233 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQR 685 (707)
Q Consensus 631 v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~~------------------------~~r~PgGES~~dv~~R 685 (707)
+..+++|+|++||.|+|++++++.+.+|+. +..|..+.. ...+|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~R 158 (228)
T PRK14119 79 VYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVR 158 (228)
T ss_pred eeECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHHHHHHH
Confidence 788899999999999999999999999986 555654321 1236899999999999
Q ss_pred HHHHHHHHHc----CCCcEEEEecCC
Q 005233 686 LEPVIIELER----QRAPVVVISHQC 707 (707)
Q Consensus 686 v~~~l~eL~~----~~~~ILVVSHgg 707 (707)
+.++|+++.. .+++||||||||
T Consensus 159 v~~~l~~~~~~~~~~~~~vlvVsHg~ 184 (228)
T PRK14119 159 VIPFWTDHISQYLLDGQTVLVSAHGN 184 (228)
T ss_pred HHHHHHHHHHhhccCCCeEEEEeChH
Confidence 9999999743 357899999996
No 8
>PRK01295 phosphoglyceromutase; Provisional
Probab=99.96 E-value=7.3e-29 Score=251.06 Aligned_cols=147 Identities=27% Similarity=0.316 Sum_probs=129.9
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g---~~ 630 (707)
+++||||||||+.+|..++++| |.|||+.|++||++++++|... ..+++.|||||+.||+|||++| .+ ++
T Consensus 2 ~~~i~LVRHGet~~n~~~~~~G~~d~~Lt~~G~~qA~~~~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (206)
T PRK01295 2 SRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAA--GLKFDIAFTSALSRAQHTCQLILEELGQPGLE 79 (206)
T ss_pred CceEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEeCCcHHHHHHHHHHHHHcCCCCCC
Confidence 4789999999999999999988 9999999999999999988753 4579999999999999999999 33 67
Q ss_pred ccccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHH-HHHHc---CCCcEEEEecC
Q 005233 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVI-IELER---QRAPVVVISHQ 706 (707)
Q Consensus 631 v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l-~eL~~---~~~~ILVVSHg 706 (707)
+.+++.|+|+++|.|+|++.+++++.+|+.+..|+.+++.+++|+|||+.|+.+|+..++ +.+.. .+++|||||||
T Consensus 80 ~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg 159 (206)
T PRK01295 80 TIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHG 159 (206)
T ss_pred eEECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEcCh
Confidence 888999999999999999999999999987766666667889999999999999999975 55532 35799999999
Q ss_pred C
Q 005233 707 C 707 (707)
Q Consensus 707 g 707 (707)
+
T Consensus 160 ~ 160 (206)
T PRK01295 160 N 160 (206)
T ss_pred H
Confidence 6
No 9
>PRK01112 phosphoglyceromutase; Provisional
Probab=99.96 E-value=9.2e-29 Score=254.14 Aligned_cols=145 Identities=29% Similarity=0.261 Sum_probs=129.8
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---------
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--------- 627 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~--------- 627 (707)
|++||||||||+.+|..++++| |.+||+.|++||++++++|. ..+++.|||||++||+|||+.+.
T Consensus 1 M~~L~LvRHGqt~~n~~~~~~G~~D~~Lte~G~~Qa~~l~~~L~----~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~ 76 (228)
T PRK01112 1 MALLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIK----DLPIDCIFTSTLVRSLMTALLAMTNHSSGKIP 76 (228)
T ss_pred CcEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHhh----cCCCCEEEEcCcHHHHHHHHHHHHhhcccccc
Confidence 4789999999999999999999 99999999999999998886 35899999999999999999873
Q ss_pred -----------------------CCCccccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHH
Q 005233 628 -----------------------GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQ 684 (707)
Q Consensus 628 -----------------------g~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~ 684 (707)
.+++..+++|+|+++|.|+|++++++.+.+|+.+..|+.+++.+++|+|||+.|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d~~~ 156 (228)
T PRK01112 77 YIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQ 156 (228)
T ss_pred cccccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHHHHH
Confidence 135667899999999999999999999999988877777788899999999999999
Q ss_pred HHHHHHHHHH-c---CCCcEEEEecCC
Q 005233 685 RLEPVIIELE-R---QRAPVVVISHQC 707 (707)
Q Consensus 685 Rv~~~l~eL~-~---~~~~ILVVSHgg 707 (707)
|+.++|+++. + .+++|+||||||
T Consensus 157 Rv~~~l~~~~~~~~~~~~~ilVVsHg~ 183 (228)
T PRK01112 157 RTLPYFQNRILPHLQQGKNVFVSAHGN 183 (228)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCHH
Confidence 9999999752 2 467899999996
No 10
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=99.96 E-value=1.4e-28 Score=253.15 Aligned_cols=147 Identities=22% Similarity=0.201 Sum_probs=126.9
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CCC
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFP 630 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~------g~~ 630 (707)
|++|||||||||.+|..++++| |.|||+.|++||+++++.|... ..+++.|||||++||+|||+++. +++
T Consensus 1 m~~l~LvRHG~t~~n~~~~~qG~~D~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~sSpl~Ra~~TA~~i~~~~~~~~~~ 78 (230)
T PRK14117 1 MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEA--GIEFDLAFTSVLKRAIKTTNLALEASDQLWVP 78 (230)
T ss_pred CCEEEEEeCccccCcccCCcCCCCCCCcCHHHHHHHHHHHHHHHHc--CCCCCEEEECCcHHHHHHHHHHHHhcccCCCC
Confidence 4789999999999999999999 9999999999999999988643 35789999999999999999872 367
Q ss_pred ccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcC------------------------cCCCCCCCCCCHHHHHHH
Q 005233 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKD------------------------KLRYRYPRGESYLDVIQR 685 (707)
Q Consensus 631 v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d------------------------~~~~r~PgGES~~dv~~R 685 (707)
+..+++|+|++||.|+|++++++.+.+|+. +..|..+ ...+++|+|||+.++.+|
T Consensus 79 ~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~R 158 (230)
T PRK14117 79 VEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLER 158 (230)
T ss_pred ceeCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHHHHHHH
Confidence 788999999999999999999999999987 4556532 123467999999999999
Q ss_pred HHHHHHHHH--c--CCCcEEEEecCC
Q 005233 686 LEPVIIELE--R--QRAPVVVISHQC 707 (707)
Q Consensus 686 v~~~l~eL~--~--~~~~ILVVSHgg 707 (707)
+..+|+++. + .+++||||||||
T Consensus 159 v~~~l~~~~~~~~~~~~~vlvVsHg~ 184 (230)
T PRK14117 159 ALPFWEDKIAPALKDGKNVFVGAHGN 184 (230)
T ss_pred HHHHHHHHHHhhccCCCEEEEEeChH
Confidence 999999974 2 247899999996
No 11
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=99.96 E-value=1.5e-28 Score=252.28 Aligned_cols=146 Identities=21% Similarity=0.243 Sum_probs=125.6
Q ss_pred ceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CCCc
Q 005233 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GFPK 631 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~------g~~v 631 (707)
|+|||||||||.+|..++++| |.|||+.|++||+.+++.|... ..+++.|||||+.||+|||++|. +.++
T Consensus 1 m~l~LvRHG~t~~n~~~~~~G~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSpl~Ra~~TA~~i~~~~~~~~~~~ 78 (227)
T PRK14118 1 MELVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEA--GYEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQ 78 (227)
T ss_pred CEEEEEecCCCccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEEeChHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999999 9999999999999999988753 35789999999999999999992 2567
Q ss_pred cccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHHHH
Q 005233 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQRL 686 (707)
Q Consensus 632 ~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~------------------------~~~r~PgGES~~dv~~Rv 686 (707)
..+++|+|++||.|||++++++.+.+|+. +..|..+. ....+|+|||+.++.+|+
T Consensus 79 ~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv 158 (227)
T PRK14118 79 VKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERV 158 (227)
T ss_pred ecCCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHHHHHHH
Confidence 78899999999999999999999999976 45554421 124579999999999999
Q ss_pred HHHHHHHHc----CCCcEEEEecCC
Q 005233 687 EPVIIELER----QRAPVVVISHQC 707 (707)
Q Consensus 687 ~~~l~eL~~----~~~~ILVVSHgg 707 (707)
..+|+++.. .+++||||||||
T Consensus 159 ~~~l~~~~~~~~~~~~~vlvVsHgg 183 (227)
T PRK14118 159 LPFWEDQIAPALLSGKRVLVAAHGN 183 (227)
T ss_pred HHHHHHHHhhhhcCCCeEEEEeCHH
Confidence 999998743 357899999996
No 12
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=99.95 E-value=2.9e-28 Score=239.00 Aligned_cols=140 Identities=29% Similarity=0.417 Sum_probs=128.6
Q ss_pred EEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccccc
Q 005233 562 ILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 636 (707)
Q Consensus 562 IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v~~~~~ 636 (707)
||||||||+.+|..+++ | |+|||+.|++||+.+++.|. ..+++.|||||++||+|||+++ .+.++.+++.
T Consensus 1 i~lvRHg~t~~n~~~~~-g~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~ 75 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCY-GQTDVPLAEKGAEQAAALREKLA----DVPFDAVYSSPLSRCRELAEILAERRGLPIIKDPR 75 (177)
T ss_pred CEEEeCCCCccCCCcee-CCCCCCcChhHHHHHHHHHHHhc----CCCCCEEEECchHHHHHHHHHHHhhcCCCceECCc
Confidence 69999999999998887 6 99999999999999998775 4689999999999999999999 4678899999
Q ss_pred ccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecCC
Q 005233 637 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQC 707 (707)
Q Consensus 637 L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~--~~~ILVVSHgg 707 (707)
|+|+++|.|+|++.+++.+.+| .+..|..++..+.+|+|||+.++.+|+..++.++.++ +++|||||||+
T Consensus 76 L~E~~~G~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~ 147 (177)
T TIGR03162 76 LREMDFGDWEGRSWDEIPEAYP-ELDAWAADWQHARPPGGESFADFYQRVSEFLEELLKAHEGDNVLIVTHGG 147 (177)
T ss_pred cccccCCccCCCCHHHHHHhCH-HHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHH
Confidence 9999999999999999999998 6888888888889999999999999999999999764 57899999985
No 13
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=99.95 E-value=5e-28 Score=243.72 Aligned_cols=147 Identities=35% Similarity=0.480 Sum_probs=137.0
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCccc
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v~~ 633 (707)
+++||||||||+.+|..++++| |+|||+.|++||+.+++.|... ...++.|||||+.||+|||+++ .+.++..
T Consensus 2 ~~~i~lvRHGqt~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~--~~~~~~i~sS~l~Ra~~TA~~~a~~~~~~~~~ 79 (208)
T COG0406 2 MMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAAR--DIGFDAIYSSPLKRAQQTAEPLAEELGLPLEV 79 (208)
T ss_pred ceEEEEEecCCccccccccccCCCCCCCCHHHHHHHHHHHHHHhhc--CCCCCEEEECchHHHHHHHHHHHHhcCCCcee
Confidence 5789999999999999999998 9999999999999999988754 5689999999999999999999 5667889
Q ss_pred cccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCC--CcEEEEecCC
Q 005233 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQR--APVVVISHQC 707 (707)
Q Consensus 634 ~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~~--~~ILVVSHgg 707 (707)
++.|+|+++|.|+|++.+++.+.+|..+..|..+++.+.+|+|||+.++..|+..++.++.+.. ++|||||||+
T Consensus 80 ~~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~ 155 (208)
T COG0406 80 DDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRSPPGNNVLVVSHGG 155 (208)
T ss_pred cCCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChH
Confidence 9999999999999999999999999999999999999999999999999999999999998753 3699999986
No 14
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=99.95 E-value=8.3e-28 Score=250.09 Aligned_cols=149 Identities=26% Similarity=0.307 Sum_probs=127.8
Q ss_pred CCCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------C
Q 005233 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------G 628 (707)
Q Consensus 557 ~~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~------g 628 (707)
|.|++|||||||||.+|..++++| |.|||+.|++||+++++.|... ...++.|||||++||+|||+++. .
T Consensus 2 ~~m~~i~LVRHGqt~~n~~~~~~G~~D~pLTe~G~~QA~~~a~~l~~~--~~~~~~IysSpl~Ra~qTA~~i~~~~~~~~ 79 (249)
T PRK14120 2 MMTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEA--GVLPDVVYTSLLRRAIRTANLALDAADRLW 79 (249)
T ss_pred CCCcEEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEecChHHHHHHHHHHHHhcccCC
Confidence 456889999999999999999988 9999999999999999988643 34689999999999999999982 3
Q ss_pred CCccccccccccccCcCCCCCHHHHHHhChH-HHHHHhcCcCCC----------------------CCCCCCCHHHHHHH
Q 005233 629 FPKIQWRALDEINAGVCDGMTYEEIKKNMPE-EYEARKKDKLRY----------------------RYPRGESYLDVIQR 685 (707)
Q Consensus 629 ~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~-~~~~~~~d~~~~----------------------r~PgGES~~dv~~R 685 (707)
.++..+++|+|++||.|+|+++.++.+++|+ .+..|..+.... .+|+|||+.++.+|
T Consensus 80 ~~i~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~~~~R 159 (249)
T PRK14120 80 IPVRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVAR 159 (249)
T ss_pred CCeEECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHHHHHH
Confidence 5778889999999999999999999999997 477787643222 24899999999999
Q ss_pred HHHHHHHH--H--cCCCcEEEEecCC
Q 005233 686 LEPVIIEL--E--RQRAPVVVISHQC 707 (707)
Q Consensus 686 v~~~l~eL--~--~~~~~ILVVSHgg 707 (707)
+..+|+++ . ..+++|||||||+
T Consensus 160 v~~~l~~~~~~~~~~~~~iliVsHgg 185 (249)
T PRK14120 160 FLPYWEDDIVPDLKAGKTVLIAAHGN 185 (249)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCHH
Confidence 99999984 2 2457899999985
No 15
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=99.95 E-value=1.6e-27 Score=240.16 Aligned_cols=141 Identities=29% Similarity=0.349 Sum_probs=125.9
Q ss_pred eEEEeccccccccCCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccc
Q 005233 561 PILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (707)
Q Consensus 561 ~IyLIRHGes~~N~~~~~~G---D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v~~~ 634 (707)
+||||||||+.+|..++++| |.|||+.|++||++++++|. ..+++.|||||+.||+|||+++ .++++.++
T Consensus 1 ~i~lvRHG~t~~n~~~~~~g~~~d~~Lt~~G~~qa~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 76 (204)
T TIGR03848 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAAALAERLA----DLPIAAIVSSPLERCRETAEPIAEARGLPPRVD 76 (204)
T ss_pred CEEEEeCCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEeCcHHHHHHHHHHHHHhcCCCceEC
Confidence 48999999999999998888 48999999999999998875 4589999999999999999999 57789999
Q ss_pred ccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc-------CCCcEEEEecCC
Q 005233 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-------QRAPVVVISHQC 707 (707)
Q Consensus 635 ~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~-------~~~~ILVVSHgg 707 (707)
++|+|+++|.|+|++++++.+. ..|..|..++..+.+|+|||+.++..|+..+++++.+ .+++||||||||
T Consensus 77 ~~L~E~~~G~~eG~~~~e~~~~--~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~ 154 (204)
T TIGR03848 77 ERLGECDYGDWTGRELKELAKE--PLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGD 154 (204)
T ss_pred cccccCCCCeeCCcCHHHHhCc--HHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCh
Confidence 9999999999999999999764 4577787788888899999999999999999998753 246899999996
No 16
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=99.95 E-value=2e-27 Score=246.94 Aligned_cols=146 Identities=26% Similarity=0.297 Sum_probs=125.5
Q ss_pred ceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CCc
Q 005233 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 631 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g---~~v 631 (707)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|... ..+++.|||||++||+|||++| .+ .++
T Consensus 1 ~~i~LVRHGqt~~n~~~~~~G~~D~pLte~G~~QA~~la~~L~~~--~~~~d~IysSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (247)
T PRK14115 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEE--GYTFDVAYTSVLKRAIRTLWIVLDELDQMWLPV 78 (247)
T ss_pred CEEEEEECCCcccccccCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcCCHHHHHHHHHHHHHcCCCCCCc
Confidence 579999999999999999998 9999999999999999988643 4578999999999999999999 33 367
Q ss_pred cccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcC------------------------CCCCCCCCCHHHHHHHH
Q 005233 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDVIQRL 686 (707)
Q Consensus 632 ~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~~------------------------~~r~PgGES~~dv~~Rv 686 (707)
..+++|+|++||.|+|++++++.+.+|+. +..|..... .+.+|+|||+.++..|+
T Consensus 79 ~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv 158 (247)
T PRK14115 79 EKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARV 158 (247)
T ss_pred eECccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHHHHHHH
Confidence 88999999999999999999999999986 555643211 23579999999999999
Q ss_pred HHHHHHHHc----CCCcEEEEecCC
Q 005233 687 EPVIIELER----QRAPVVVISHQC 707 (707)
Q Consensus 687 ~~~l~eL~~----~~~~ILVVSHgg 707 (707)
..+|+++.. .+++||||||||
T Consensus 159 ~~~l~~~i~~~~~~~~~vlvVtHgg 183 (247)
T PRK14115 159 LPYWNETIAPQLKSGKRVLIAAHGN 183 (247)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeChH
Confidence 999988632 357899999996
No 17
>PRK03482 phosphoglycerate mutase; Provisional
Probab=99.95 E-value=1.6e-27 Score=242.04 Aligned_cols=145 Identities=26% Similarity=0.289 Sum_probs=124.3
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCccc
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQ 633 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v~~ 633 (707)
|++||||||||+.+|..++++| |.|||+.|++||+.+++.|. ..+++.|||||+.||+|||+++ .+.++.+
T Consensus 1 m~~i~lvRHG~t~~n~~~~~~g~~d~~Lt~~G~~qA~~~~~~l~----~~~~~~I~sSpl~Ra~qTA~~i~~~~~~~~~~ 76 (215)
T PRK03482 1 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAK----ELGITHIISSDLGRTRRTAEIIAQACGCDIIF 76 (215)
T ss_pred CcEEEEEeCCCcccccccccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhcCCCeeE
Confidence 4789999999999999888887 99999999999999998875 3478999999999999999998 5678889
Q ss_pred cccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecCC
Q 005233 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQC 707 (707)
Q Consensus 634 ~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~--~~~ILVVSHgg 707 (707)
+++|+|+++|.|+|++++++...++.....+...+..+++|+|||+.++..|+..+++++.+. +++|||||||+
T Consensus 77 ~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsHg~ 152 (215)
T PRK03482 77 DPRLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLELPQGSRPLLVSHGI 152 (215)
T ss_pred ChhccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcH
Confidence 999999999999999999987654432222333455678899999999999999999998653 46899999985
No 18
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=99.95 E-value=2.5e-27 Score=246.05 Aligned_cols=146 Identities=27% Similarity=0.323 Sum_probs=124.9
Q ss_pred ceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CCc
Q 005233 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 631 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g---~~v 631 (707)
|+|||||||||.+|..++++| |.+||+.|++||+.+++.|... ..+++.|||||++||+|||++| .+ .++
T Consensus 1 ~~l~lVRHGqt~~n~~~~~~G~~D~~Lt~~G~~QA~~la~~L~~~--~~~~d~iysSpl~Ra~qTA~ii~~~~~~~~~~i 78 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEE--GYEFDVAYTSLLKRAIHTLNIALDELDQLWIPV 78 (245)
T ss_pred CEEEEEeCCCcCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEEcChHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999988 9999999999999999988643 4578999999999999999999 23 567
Q ss_pred cccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcC------------------CC------CCCCCCCHHHHHHHH
Q 005233 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------RY------RYPRGESYLDVIQRL 686 (707)
Q Consensus 632 ~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~~------------------~~------r~PgGES~~dv~~Rv 686 (707)
..++.|+|+++|.|+|++++++.+.+|+. +..|..+.. .| .+|+|||+.++.+|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~~~~Rv 158 (245)
T TIGR01258 79 KKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARV 158 (245)
T ss_pred eeCcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHHHHHHH
Confidence 77899999999999999999999999976 555543211 12 378999999999999
Q ss_pred HHHHHHHHc----CCCcEEEEecCC
Q 005233 687 EPVIIELER----QRAPVVVISHQC 707 (707)
Q Consensus 687 ~~~l~eL~~----~~~~ILVVSHgg 707 (707)
..+|+++.. .+++||||||||
T Consensus 159 ~~~l~~l~~~~~~~~~~vlvVsHg~ 183 (245)
T TIGR01258 159 LPYWNDEIAPDLLSGKRVLIVAHGN 183 (245)
T ss_pred HHHHHHHHhhhhcCCCEEEEEcChH
Confidence 999999742 356899999996
No 19
>PRK13462 acid phosphatase; Provisional
Probab=99.95 E-value=2.6e-27 Score=239.27 Aligned_cols=139 Identities=24% Similarity=0.313 Sum_probs=121.5
Q ss_pred CCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCC--EEEEcCcHHHHHHHHHhcCCCc-c
Q 005233 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAA--SIWTSTLQRTILTASPIAGFPK-I 632 (707)
Q Consensus 558 ~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d--~I~TSPl~RAiQTA~~i~g~~v-~ 632 (707)
.+++|||||||||.+|..++++| |.|||+.|++||+++++.|... +++ .|||||++||+|||+++ +.+. .
T Consensus 4 ~~~~i~LvRHG~t~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~----~~~~~~i~sSpl~Ra~qTA~~i-~~~~~~ 78 (203)
T PRK13462 4 RNHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGEL----ELDDPLVISSPRRRALDTAKLA-GLTVDE 78 (203)
T ss_pred cccEEEEEeCCCCCcccCCCccCCCCCCCCHHHHHHHHHHHHHHHhC----CCCCCEEEECchHHHHHHHHHh-cCcccc
Confidence 56889999999999999999988 9999999999999999888643 455 79999999999999998 5544 6
Q ss_pred ccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecCC
Q 005233 633 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQC 707 (707)
Q Consensus 633 ~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~--~~~ILVVSHgg 707 (707)
.+++|+|++||.|+|+++.++.+.+|+ +..|. ..+|+|||+.++.+|+..+++++.++ +++|||||||+
T Consensus 79 ~~~~LrE~~~G~~eG~~~~ei~~~~~~-~~~~~-----~~~p~gES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~ 149 (203)
T PRK13462 79 VSGLLAEWDYGSYEGLTTPQIRESEPD-WLVWT-----HGCPGGESVAQVNERADRAVALALEHMESRDVVFVSHGH 149 (203)
T ss_pred cCccccccCCccccCCcHHHHHHhCch-HHhhc-----CCCCCCccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCH
Confidence 789999999999999999999999987 44443 34589999999999999999998653 56899999996
No 20
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.94 E-value=3e-27 Score=224.95 Aligned_cols=145 Identities=37% Similarity=0.559 Sum_probs=131.4
Q ss_pred eEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCccccc
Q 005233 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 635 (707)
Q Consensus 561 ~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v~~~~ 635 (707)
+|||||||++.+|..+++++ |.|||+.|+.||+.++..|.+. ..+++.|||||+.||+|||+++ .+.++.+++
T Consensus 1 ~i~liRHg~~~~n~~~~~~~~~d~~Lt~~G~~qA~~~~~~l~~~--~~~~~~i~~Sp~~R~~qTA~~~~~~~~~~~~~~~ 78 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGRVQGDSDPPLTERGREQARQLGEYLAER--DIQIDVIYSSPLRRCIQTAEIIAEGLGIEIIVDP 78 (158)
T ss_dssp EEEEEE-S-BHHHHTTBCGTTSSTGBEHHHHHHHHHHHHHHHHT--TSSCSEEEEESSHHHHHHHHHHHHHHTSEEEEEG
T ss_pred CEEEEECCccccccCCCcCCCCCccccHHHHHHHHhhccccccc--ccCceEEecCCcchhhhhhchhhccccccccccc
Confidence 59999999999998888777 6689999999999999998764 6689999999999999999999 468899999
Q ss_pred cccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHH---cCCCcEEEEecCC
Q 005233 636 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELE---RQRAPVVVISHQC 707 (707)
Q Consensus 636 ~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~---~~~~~ILVVSHgg 707 (707)
.|+|+++|.|+|++..++.+.+|..+..|..+.+.+++|++||+.++..|+..++++|. ..+++|||||||+
T Consensus 79 ~l~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~ 153 (158)
T PF00300_consen 79 RLREIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIAYKRPGENVLIVSHGG 153 (158)
T ss_dssp GGSCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HH
T ss_pred ccccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHH
Confidence 99999999999999999999999999999999999999999999999999999999998 3578999999985
No 21
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.94 E-value=1.6e-26 Score=222.26 Aligned_cols=141 Identities=30% Similarity=0.378 Sum_probs=122.4
Q ss_pred eEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCccccc
Q 005233 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWR 635 (707)
Q Consensus 561 ~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v~~~~ 635 (707)
+|||||||++.+|..+.+.| |.|||+.|++||+.++++|.... ..+++.|||||+.||+|||+++ .+.+ ...+
T Consensus 1 ~i~lvRHG~s~~n~~~~~~g~~d~~Lt~~G~~qa~~~a~~l~~~~-~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~-~~~~ 78 (155)
T smart00855 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLG-RLRFDVIYSSPLLRARETAEALAIALGLG-EVDP 78 (155)
T ss_pred CEEEEeCCCCcccccCeEcCCCCCCCCHHHHHHHHHHHHHHHhcc-CCCCCEEEeCchHHHHHHHHHHHHhcCCC-CCCh
Confidence 48999999999998777665 99999999999999999886432 3589999999999999999999 3344 4889
Q ss_pred cccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc----CCCcEEEEecCC
Q 005233 636 ALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER----QRAPVVVISHQC 707 (707)
Q Consensus 636 ~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~----~~~~ILVVSHgg 707 (707)
.|+|+++|.|+|++++++.+.+|+.+..| +.+.+|+|||+.++..|+..++.++.+ .+++|||||||+
T Consensus 79 ~L~E~~~G~~~g~~~~~~~~~~~~~~~~~----~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~ 150 (155)
T smart00855 79 RLRERDYGAWEGLTKEEERAKAWTRPADW----LGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGG 150 (155)
T ss_pred hhhhcccceecCCcHHHHHHHHHHHHhcc----CCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCc
Confidence 99999999999999999998888765444 577889999999999999999999865 357899999996
No 22
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.94 E-value=4.6e-26 Score=249.80 Aligned_cols=147 Identities=30% Similarity=0.370 Sum_probs=132.7
Q ss_pred CCCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCc
Q 005233 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPK 631 (707)
Q Consensus 557 ~~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v 631 (707)
..+++|||||||++.+|..++++| |.+||+.|++||+.+++.|... .+++.|||||+.||+|||+++ .+.++
T Consensus 169 ~~~~~i~LvRHGet~~n~~~~~~g~~D~~Lt~~G~~QA~~l~~~l~~~---~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~ 245 (372)
T PRK07238 169 GTPTRLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAAR---GGIDAVVSSPLQRARDTAAAAAKALGLDV 245 (372)
T ss_pred CCceEEEEEeCCCCCcccCCeeeCCCCCCcCHHHHHHHHHHHHHHhcc---CCCCEEEECChHHHHHHHHHHHHhcCCCc
Confidence 345889999999999999988887 9999999999999999887532 178999999999999999999 56788
Q ss_pred cccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecCC
Q 005233 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQC 707 (707)
Q Consensus 632 ~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~--~~~ILVVSHgg 707 (707)
.+++.|+|+++|.|+|+++.++.+.+|+.+..|..++ .+.+|+|||+.++.+|+..++++|... +++|||||||+
T Consensus 246 ~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~w~~~~-~~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~vlvVtHg~ 322 (372)
T PRK07238 246 TVDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADT-SVAPPGGESFDAVARRVRRARDRLIAEYPGATVLVVSHVT 322 (372)
T ss_pred EECccceeCCCCccCCCCHHHHHHHCHHHHHHHHhCC-CCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEEChH
Confidence 8999999999999999999999999999999998776 678899999999999999999998653 56899999995
No 23
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.2e-23 Score=212.13 Aligned_cols=148 Identities=30% Similarity=0.341 Sum_probs=130.6
Q ss_pred CCCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---
Q 005233 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG--- 628 (707)
Q Consensus 557 ~~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g--- 628 (707)
+...+++|||||||+||.+++++| |.+||+.|.+||+++++.|... +..++.+|||+++||+|||+.+ .+
T Consensus 3 ~~~~~lvlvRHGes~wN~e~~~~G~~D~~Lte~G~~qA~~~~~~l~~~--~~~~~~~~tS~l~RakqT~~~il~~~~~~~ 80 (214)
T KOG0235|consen 3 SNTFRLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDL--NIEFDVCYTSDLKRAKQTAELILEELKQKK 80 (214)
T ss_pred CcceEEEEEecCchhhhhhCcccccccCccChhhHHHHHHHHHHHHhc--CCcccEEecCHHHHHHHHHHHHHHhhccCC
Confidence 345789999999999999999999 9999999999999999999876 6779999999999999999999 23
Q ss_pred CCccccccccccccCcCCCCCHHHHHHhChHH--HHHHhcCc-CCCCCCCCCCHHHHHHHHHHHHHHHHc----CCCcEE
Q 005233 629 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE--YEARKKDK-LRYRYPRGESYLDVIQRLEPVIIELER----QRAPVV 701 (707)
Q Consensus 629 ~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~--~~~~~~d~-~~~r~PgGES~~dv~~Rv~~~l~eL~~----~~~~IL 701 (707)
+++....+|+|+++|.++|+...|+.+.++++ +..|.... ....+|.|||+.++..|+.+++++... ++.+||
T Consensus 81 ~pv~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vl 160 (214)
T KOG0235|consen 81 VPVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVL 160 (214)
T ss_pred cceEechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCcEEE
Confidence 78899999999999999999999999999987 44554443 445678999999999999999997643 478999
Q ss_pred EEecC
Q 005233 702 VISHQ 706 (707)
Q Consensus 702 VVSHg 706 (707)
|++||
T Consensus 161 i~aHG 165 (214)
T KOG0235|consen 161 IVAHG 165 (214)
T ss_pred EEcCc
Confidence 99998
No 24
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.88 E-value=3.3e-22 Score=206.57 Aligned_cols=134 Identities=25% Similarity=0.307 Sum_probs=112.8
Q ss_pred ccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---C---CCccccccccccccC
Q 005233 572 DNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA---G---FPKIQWRALDEINAG 643 (707)
Q Consensus 572 ~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~---g---~~v~~~~~L~Ei~~G 643 (707)
||..++++| |.|||+.|++||+.+++.|... ..+++.|||||++||+|||+++. + +++..+++|+|+++|
T Consensus 1 ~N~~~~~qG~~D~pLTe~G~~QA~~l~~~L~~~--~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~L~E~~~G 78 (236)
T PTZ00123 1 WNKENRFTGWTDVPLSEKGVQEAREAGKLLKEK--GFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLNERHYG 78 (236)
T ss_pred CcccCceeCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCCceeCchhhhcccc
Confidence 577788888 9999999999999999988753 45799999999999999999992 2 467788999999999
Q ss_pred cCCCCCHHHHHHhChHHHHHHhcCcC-------------------------CCCCCCCCCHHHHHHHHHHHHHHHHc---
Q 005233 644 VCDGMTYEEIKKNMPEEYEARKKDKL-------------------------RYRYPRGESYLDVIQRLEPVIIELER--- 695 (707)
Q Consensus 644 ~~eGlt~~ei~~~~P~~~~~~~~d~~-------------------------~~r~PgGES~~dv~~Rv~~~l~eL~~--- 695 (707)
.|+|++++++.+.+|+.+..++..++ .+++|+|||+.++.+|+..+|+++..
T Consensus 79 ~~EG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~li~~~~ 158 (236)
T PTZ00123 79 ALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDI 158 (236)
T ss_pred cccCCCHHHHHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987544443322 13458999999999999999998632
Q ss_pred -CCCcEEEEecCC
Q 005233 696 -QRAPVVVISHQC 707 (707)
Q Consensus 696 -~~~~ILVVSHgg 707 (707)
.+++||||||||
T Consensus 159 ~~~~~vliVsHG~ 171 (236)
T PTZ00123 159 LAGKKVLVAAHGN 171 (236)
T ss_pred hCCCeEEEEeCHH
Confidence 357899999996
No 25
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.85 E-value=2.5e-21 Score=192.47 Aligned_cols=146 Identities=24% Similarity=0.270 Sum_probs=130.2
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh------cCCC
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI------AGFP 630 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i------~g~~ 630 (707)
+++++|+|||||+||..+++.| |.+||++|..||...|+.|++. +..||.+|||-++||++|+.++ ..++
T Consensus 1 ~~~Lvl~RHGqSeWN~~NlFtGW~Dv~LtekG~~EA~~ag~llk~~--~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ip 78 (230)
T COG0588 1 MMKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEE--GLEFDIAYTSVLKRAIKTLNIVLEESDQLWIP 78 (230)
T ss_pred CceEEEEecCchhhhhcCceeeeeecCcchhhHHHHHHHHHHHHHc--CCCcceeehHHHHHHHHHHHHHhhhhcccCcc
Confidence 4689999999999999999999 9999999999999999999877 7899999999999999999998 3578
Q ss_pred ccccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCC-------------------------CCCCHHHHHHH
Q 005233 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYP-------------------------RGESYLDVIQR 685 (707)
Q Consensus 631 v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~P-------------------------gGES~~dv~~R 685 (707)
+....+|+|+++|.+.|+...+..++|.++....+...+...+| .+||+.++.+|
T Consensus 79 v~kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~R 158 (230)
T COG0588 79 VIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVER 158 (230)
T ss_pred hhhHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccchHHHHHHH
Confidence 88889999999999999999999999998766555555666666 34999999999
Q ss_pred HHHHHHHHH----cCCCcEEEEecC
Q 005233 686 LEPVIIELE----RQRAPVVVISHQ 706 (707)
Q Consensus 686 v~~~l~eL~----~~~~~ILVVSHg 706 (707)
+.++|.+.. ..+++|||++||
T Consensus 159 v~Pyw~~~I~p~l~~Gk~VlI~AHG 183 (230)
T COG0588 159 VLPYWEDDIAPNLKSGKNVLIVAHG 183 (230)
T ss_pred hhHHHHHHhhHHHhCCCeEEEEecc
Confidence 999998753 358999999998
No 26
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=99.75 E-value=5.1e-18 Score=152.78 Aligned_cols=93 Identities=28% Similarity=0.504 Sum_probs=85.8
Q ss_pred EEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeEEEEEeCCCCCceeeeEEEeeCCCCCceEeecCCCc
Q 005233 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPNR 112 (707)
Q Consensus 33 ~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~~E~g~NR 112 (707)
|-||+.||++..++.+.|+||+|.||+|++++|++|+..+.+.|++++++|....+++|||++++.++ ..+.||.|+||
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi~~~~~-~~~~WE~g~nr 80 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYIIANKDS-GVVSWENGPNR 80 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEEEeCCC-CcEEEEcCCCe
Confidence 78999999999999999999999999999999999999999999999999998889999999998776 67789999999
Q ss_pred cccCCCCCCCceEE
Q 005233 113 LLTGGALQGDSRSA 126 (707)
Q Consensus 113 ~l~~~~~~~~~~~~ 126 (707)
.+..|.++++...+
T Consensus 81 ~~~~p~~~~~~~~~ 94 (99)
T cd05816 81 ELSAPSLKGESSTL 94 (99)
T ss_pred EEECCccCCCCceE
Confidence 99999887774443
No 27
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=99.72 E-value=1.3e-17 Score=149.04 Aligned_cols=89 Identities=26% Similarity=0.493 Sum_probs=73.7
Q ss_pred eEEEEEEEeecccCCCceeEEecCCCccCCCCcccccccccc----cCCeeEEEEEeCCCCCceeeeEEEeeCCCCCceE
Q 005233 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE----SASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (707)
Q Consensus 30 ~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~----~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~ 105 (707)
|.-|.|+| +..+..++.++|+||+|.||+|||+||++|... +.+.|++++.+|. ..++||||++++.+. .+.
T Consensus 1 ~v~V~F~v-~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~-~~~~eYKy~i~~~~g--~~~ 76 (96)
T PF00686_consen 1 QVSVTFRV-NYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPA-GTPFEYKYVIKDADG--NVI 76 (96)
T ss_dssp EEEEEEEE-SE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEET-TSEEEEEEEEEETTS--EEE
T ss_pred CEEEEEEE-EeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcC-CCEEEEEEEEEeCCC--CEE
Confidence 56789999 669999999999999999999999999999986 6799999999999 558999999988766 558
Q ss_pred eecCCCccccCCCCCCC
Q 005233 106 VEEGPNRLLTGGALQGD 122 (707)
Q Consensus 106 ~E~g~NR~l~~~~~~~~ 122 (707)
||.|+||.+..+.....
T Consensus 77 WE~g~nR~~~~~~~~~~ 93 (96)
T PF00686_consen 77 WESGENRVLTVPSSGSS 93 (96)
T ss_dssp E-SSSEEEEE--SSSEE
T ss_pred ECCCCCEEEECCCCCce
Confidence 99999999988766544
No 28
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.71 E-value=3.6e-17 Score=156.20 Aligned_cols=101 Identities=34% Similarity=0.451 Sum_probs=86.0
Q ss_pred eEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c-CCCcccc
Q 005233 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPKIQW 634 (707)
Q Consensus 561 ~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~-g~~v~~~ 634 (707)
+|||||||++.+|......+ |.|||+.|++||+.++++|... ..+++.|||||+.||+|||+++ . +.++...
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~--~~~~~~i~~Sp~~Ra~qTa~~l~~~~~~~~~~~~ 78 (153)
T cd07067 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKEL--GIKFDRIYSSPLKRAIQTAEIILEELPGLPVEVD 78 (153)
T ss_pred CEEEEECCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECcHHHHHHHHHHHHHhcCCCCceeC
Confidence 58999999999987765444 8999999999999999998754 3479999999999999999999 2 4567777
Q ss_pred ccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecCC
Q 005233 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQC 707 (707)
Q Consensus 635 ~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~--~~~ILVVSHgg 707 (707)
+.|+| .|+..++.++.+. +++|+||||++
T Consensus 79 ~~L~e--------------------------------------------~R~~~~~~~l~~~~~~~~iliV~H~~ 109 (153)
T cd07067 79 PRLRE--------------------------------------------ARVLPALEELIAPHDGKNVLIVSHGG 109 (153)
T ss_pred ccchH--------------------------------------------HHHHHHHHHHHHhCCCCeEEEEeChH
Confidence 77777 7999999998764 67999999985
No 29
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.70 E-value=8.1e-17 Score=171.99 Aligned_cols=124 Identities=21% Similarity=0.325 Sum_probs=91.3
Q ss_pred ceEEEeccccccccCCCCcCCCCC---CCHHHHHHHHHHHHHHHHHhcC----CCCCEEEEcCcHHHHHHHHHh---c-C
Q 005233 560 RPILLTRHGESRDNVRGRIGGDTI---LSDAGEIYAKKLANFVEKRLKS----ERAASIWTSTLQRTILTASPI---A-G 628 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~GD~p---LTe~G~~QA~~Lg~~L~~~l~~----~~~d~I~TSPl~RAiQTA~~i---~-g 628 (707)
++||||||||+.++ + ..|.+ ||+.|++||+++++.|+..... .+++.|||||+.||+|||++| . +
T Consensus 103 ~~L~LVRHGq~~~~--~--~~d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~~~~~d~IysSPL~RA~qTAeiIa~~~~~ 178 (299)
T PTZ00122 103 RQIILVRHGQYINE--S--SNDDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYHSDMTRAKETAEIISEAFPG 178 (299)
T ss_pred eEEEEEECCCCCCC--C--CCCcccCCCCHHHHHHHHHHHHHHHHhhccccccCCCCEEEEcCcHHHHHHHHHHHHhCCC
Confidence 88999999996543 2 23444 9999999999999998764221 279999999999999999998 2 4
Q ss_pred CCccccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC-----CCcEEEE
Q 005233 629 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-----RAPVVVI 703 (707)
Q Consensus 629 ~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~-----~~~ILVV 703 (707)
.++..+++|+|. ++..+. | ....+.++++|+ .++.+|+..+++++..+ ++.+|||
T Consensus 179 ~~v~~d~~LrEG-------~~~~~~----~--------~~~~~~~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVV 238 (299)
T PTZ00122 179 VRLIEDPNLAEG-------VPCAPD----P--------PSRGFKPTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIV 238 (299)
T ss_pred CCceeCcccccC-------CccccC----c--------cccccCCCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 678889999992 222211 1 011234455555 66799999999998542 2568999
Q ss_pred ecCC
Q 005233 704 SHQC 707 (707)
Q Consensus 704 SHgg 707 (707)
||||
T Consensus 239 sHGg 242 (299)
T PTZ00122 239 CHGN 242 (299)
T ss_pred eCCh
Confidence 9996
No 30
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.4e-15 Score=148.36 Aligned_cols=119 Identities=26% Similarity=0.349 Sum_probs=101.0
Q ss_pred CCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005233 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (707)
Q Consensus 346 ~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d 425 (707)
..++++.+|||+||+||||||||.+|+++|...|+.+.++++|..| ++.+.+.+|..+++.++.++..++|+...+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR---~gL~~dLgFs~edR~eniRRvaevAkll~d- 93 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR---HGLNRDLGFSREDRIENIRRVAEVAKLLAD- 93 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh---hcccCCCCCChHHHHHHHHHHHHHHHHHHH-
Confidence 4467899999999999999999999999999999999999998875 577889999999999999999999998655
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeC-CHHHHHHH
Q 005233 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICN-DRDIIERN 478 (707)
Q Consensus 426 ~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~-d~e~i~~r 478 (707)
+|.+||+..+.+.++.|++++++...+ + |+|++++ +.++.++|
T Consensus 94 -------aG~iviva~ISP~r~~R~~aR~~~~~~-~--FiEVyV~~pl~vce~R 137 (197)
T COG0529 94 -------AGLIVIVAFISPYREDRQMARELLGEG-E--FIEVYVDTPLEVCERR 137 (197)
T ss_pred -------CCeEEEEEeeCccHHHHHHHHHHhCcC-c--eEEEEeCCCHHHHHhc
Confidence 999999999999999999999994433 2 5555433 34554443
No 31
>COG0645 Predicted kinase [General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=147.46 Aligned_cols=143 Identities=16% Similarity=0.194 Sum_probs=120.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-----VNQSADFFRADNPEGMEARNEVAALAMED 425 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g-----~~~~~~f~~~~~e~~~~~~~~vA~~~l~d 425 (707)
+.+++|+|+||+||||+|+.|++.|++..+++|++ ||.+.| ..+...|+.......|..+...|..++.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i-----rk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~- 74 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI-----RKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLS- 74 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcCceEEehHHH-----HHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHh-
Confidence 36899999999999999999999999988777766 999888 2333446666677789999999999888
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 005233 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (707)
Q Consensus 426 ~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~ 504 (707)
.|..||+|+++..+..|+.++.+ ...++.+..|.|.| +.++++.|+..|+ +|.+|. ++..+
T Consensus 75 -------~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~a-p~~v~~~rl~aR~---~d~sDA-~~~il------ 136 (170)
T COG0645 75 -------SGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEA-PEEVLRGRLAARK---GDASDA-TFDIL------ 136 (170)
T ss_pred -------CCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCC-cHHHHHHHHHHhC---CCcccc-hHHHH------
Confidence 99999999999999999999999 77888888888887 4789999998874 578887 77766
Q ss_pred HHHhhhhhccCCCCC
Q 005233 505 RLANYEKVYEPVDEG 519 (707)
Q Consensus 505 Ri~~y~~~yEpl~e~ 519 (707)
..+...++|+.+.
T Consensus 137 --~~q~~~~~~~~~~ 149 (170)
T COG0645 137 --RVQLAEDEPWTEW 149 (170)
T ss_pred --HHHHhhhCCcccc
Confidence 6666778888764
No 32
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.61 E-value=2.2e-15 Score=133.93 Aligned_cols=85 Identities=25% Similarity=0.436 Sum_probs=76.8
Q ss_pred EEEEEEeecccCCCceeEEecCCCccCCCCccccccccccc-CCeeEEEEEeCC-CCCceeeeEEEeeCCCCCceEeecC
Q 005233 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES-ASMWELSFVVPP-NHETLDFKFLLKPKYGNGPCIVEEG 109 (707)
Q Consensus 32 ~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~-~~~W~ls~~~~~-~~~~leyKf~l~~~~~~~~~~~E~g 109 (707)
+|.|++.+ ++..++.++|+||+|.||+|++++|++|+..+ .+.|++++++|. ...+++|||++++.+ ..+.||.|
T Consensus 1 ~v~f~i~~-~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~~~~~--~~~~wE~~ 77 (96)
T cd05467 1 QVRFQVRC-TTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVIVDDD--GNVQWESG 77 (96)
T ss_pred CEEEEEEE-ECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEEECCC--CCEEeccC
Confidence 47899999 88999999999999999999999999999998 999999999999 456899999999866 57789999
Q ss_pred CCccccCCCC
Q 005233 110 PNRLLTGGAL 119 (707)
Q Consensus 110 ~NR~l~~~~~ 119 (707)
+||.+..|..
T Consensus 78 ~~r~~~~~~~ 87 (96)
T cd05467 78 SNRVLTVPST 87 (96)
T ss_pred CCeEEEcCCC
Confidence 9999987643
No 33
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=99.60 E-value=2.5e-15 Score=135.72 Aligned_cols=91 Identities=26% Similarity=0.310 Sum_probs=79.0
Q ss_pred CeEEEEEEEeecccCCCceeEEecCCCccCCCCcccccccc----cccCCeeEEEEEeCCCCCceeeeEEEeeCCCCCce
Q 005233 29 GQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMG----RESASMWELSFVVPPNHETLDFKFLLKPKYGNGPC 104 (707)
Q Consensus 29 ~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~----~~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~ 104 (707)
.|+-|.|++.+|++..++.+.|+||+|.||+|++.+|+.|. ....+.|.+++++|... ++||||++++.+ +. +
T Consensus 1 ~~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~-~~eyK~~~~~~~-~~-~ 77 (101)
T cd05807 1 DQVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGT-TIEFKFIKKNGD-NT-V 77 (101)
T ss_pred CcEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCC-cEEEEEEEECCC-CC-E
Confidence 47889999999999999999999999999999999999654 24678999999999998 799999999866 44 4
Q ss_pred EeecCCCccccCCCCCCC
Q 005233 105 IVEEGPNRLLTGGALQGD 122 (707)
Q Consensus 105 ~~E~g~NR~l~~~~~~~~ 122 (707)
.||.|+||.+..|....+
T Consensus 78 ~WE~g~nr~~~~p~~~~~ 95 (101)
T cd05807 78 TWESGSNHTYTAPSSTTG 95 (101)
T ss_pred EEEeCCCEEEeCCCCCce
Confidence 699999999998865433
No 34
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.60 E-value=6.8e-15 Score=142.82 Aligned_cols=116 Identities=24% Similarity=0.320 Sum_probs=88.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
++++|||+|||||||||||++|.++|...|+++.++++|.+|+ +.+.+.+|..+++.+.++++.++|+.+.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~---~l~~dl~fs~~dR~e~~rr~~~~A~ll~~----- 72 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH---GLNADLGFSKEDREENIRRIAEVAKLLAD----- 72 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT---TTTTT--SSHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh---ccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----
Confidence 4789999999999999999999999999999999999987764 55667788888889899999899988655
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHH
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 478 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~r 478 (707)
+|.+||++++.+.++.|+.++++...+ +++.|.+.|+ .+++++|
T Consensus 73 ---~G~ivIva~isp~~~~R~~~R~~~~~~-~f~eVyv~~~-~e~~~~R 116 (156)
T PF01583_consen 73 ---QGIIVIVAFISPYREDREWARELIPNE-RFIEVYVDCP-LEVCRKR 116 (156)
T ss_dssp ---TTSEEEEE----SHHHHHHHHHHHHTT-EEEEEEEES--HHHHHHH
T ss_pred ---CCCeEEEeeccCchHHHHHHHHhCCcC-ceEEEEeCCC-HHHHHHh
Confidence 999999999999999999999994432 4445555664 4555544
No 35
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.58 E-value=8.5e-15 Score=138.72 Aligned_cols=98 Identities=32% Similarity=0.459 Sum_probs=78.8
Q ss_pred eEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc-C----CCccc
Q 005233 561 PILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-G----FPKIQ 633 (707)
Q Consensus 561 ~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~-g----~~v~~ 633 (707)
.|||||||++.++..+.+.+ |.+||+.|++||+.+++.|.+. ...++.|||||+.||+|||+++. + .++..
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~l~~~l~~~--~~~~~~v~sSp~~R~~~Ta~~~~~~~~~~~~~~~ 78 (153)
T cd07040 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRER--YIKFDRIYSSPLKRAIQTAEIILEGLFEGLPVEV 78 (153)
T ss_pred CEEEEeCCCCccccCCCccCCCCCCcCHHHHHHHHHHHHHHHHh--CCCCCEEEECChHHHHHHHHHHHHHhcCCCCeEE
Confidence 48999999999987765444 9999999999999999999765 24789999999999999999982 1 12211
Q ss_pred cccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC----CCcEEEEecCC
Q 005233 634 WRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ----RAPVVVISHQC 707 (707)
Q Consensus 634 ~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~----~~~ILVVSHgg 707 (707)
.+. .|+..++.++.+. +++++||||++
T Consensus 79 ~~~-----------------------------------------------~r~~~~~~~~~~~~~~~~~~iliv~H~~ 109 (153)
T cd07040 79 DPR-----------------------------------------------ARVLNALLELLARHLLDGKNVLIVSHGG 109 (153)
T ss_pred CHH-----------------------------------------------HHHHHHHHHHHHhhCCCCCEEEEEeCCH
Confidence 111 7888888888663 67999999985
No 36
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.57 E-value=6.5e-15 Score=132.88 Aligned_cols=82 Identities=22% Similarity=0.430 Sum_probs=75.8
Q ss_pred EEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeEEEEEeCCCCCceeeeEEEeeCCCCCceEeecCCCc
Q 005233 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPNR 112 (707)
Q Consensus 33 ~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~~E~g~NR 112 (707)
|.|++.++ +..++.+.|+||+|.||+|++.+|++|...+.+.|+.++++|. ..++||||++++.+++....||.|+||
T Consensus 2 v~F~i~~~-t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~~~veYKY~i~~~~~~~~~~WE~g~nr 79 (100)
T cd05817 2 VTFKIHYP-TQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-SVYIEYKYFVSNYDDPNTVLWESGPNR 79 (100)
T ss_pred EEEEEEEE-cCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-CCcEEEEEEEEecCCCCCeEecCCCCE
Confidence 68899988 8889999999999999999999999999999999999999999 577999999998776667889999999
Q ss_pred cccC
Q 005233 113 LLTG 116 (707)
Q Consensus 113 ~l~~ 116 (707)
.+..
T Consensus 80 ~~~~ 83 (100)
T cd05817 80 VLRT 83 (100)
T ss_pred EEEe
Confidence 9874
No 37
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.57 E-value=5.4e-14 Score=132.46 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=82.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNPEGMEARNEVAALAMEDMISWMH 431 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f-~~~~~e~~~~~~~~vA~~~l~d~~~~L~ 431 (707)
||+|+|+|||||||+|+.|++.++ ..+++.|+++..+.+....... ........++.+...+.. ..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l 67 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRK--------AL 67 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHH--------HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHH--------HH
Confidence 799999999999999999998866 5568888888866553222111 111111112222223322 23
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcC
Q 005233 432 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQS 486 (707)
Q Consensus 432 ~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~ 486 (707)
+.|..+|+|+||..+..|+.+.++ .++++++.+|++.|+ .+++.+|+..|....
T Consensus 68 ~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~~~ 122 (143)
T PF13671_consen 68 RNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP-EETLRERLAQRNREG 122 (143)
T ss_dssp HTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH-HHHHHHHHHTTHCCC
T ss_pred HcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC-HHHHHHHHHhcCCcc
Confidence 378999999999999999999998 788999999999885 577888888887643
No 38
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.56 E-value=8.3e-15 Score=131.61 Aligned_cols=87 Identities=22% Similarity=0.338 Sum_probs=78.4
Q ss_pred EEEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeEEEEEeCCCCCceeeeEEEeeCCCC-CceEeecCC
Q 005233 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGN-GPCIVEEGP 110 (707)
Q Consensus 32 ~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~-~~~~~E~g~ 110 (707)
.|.|.+.+.....++.+.|+||+|.||+|++++|+.|.....+.|.+++++|... ++||||++++.++. ..+.||.|+
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~-~veyKyv~~~~~~~~~~v~WE~g~ 80 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPAST-NVEWKCLKRNETNPTAGVQWQGGG 80 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCC-eEEEEEEEEcCCCCcceEEEeeCC
Confidence 4788888889999999999999999999999999999999999999999999985 79999999987763 557799999
Q ss_pred CccccCCCC
Q 005233 111 NRLLTGGAL 119 (707)
Q Consensus 111 NR~l~~~~~ 119 (707)
||.+..|..
T Consensus 81 Nr~~~~p~~ 89 (97)
T cd05810 81 NNQLTTGNS 89 (97)
T ss_pred CEEEeCCCC
Confidence 999887765
No 39
>PRK06193 hypothetical protein; Provisional
Probab=99.56 E-value=2.5e-14 Score=144.91 Aligned_cols=116 Identities=15% Similarity=0.105 Sum_probs=88.9
Q ss_pred CceEEEeccccccccCCCCcCC-------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCc
Q 005233 559 PRPILLTRHGESRDNVRGRIGG-------DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPK 631 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G-------D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~g~~v 631 (707)
...|||||||++++|..+.+.| |.|||++|++||+.++++|.+. ...++.|||||+.||+|||+++.+..
T Consensus 42 ~~~L~LvRHGet~~n~~~~~~gd~d~~~~~rpLt~~G~~qA~~l~~~L~~~--~~~~d~V~sSpl~Ra~qTA~il~~~~- 118 (206)
T PRK06193 42 GGYVIYFRHAATDRSQADQDTSDMDDCSTQRNLSEEGREQARAIGEAFRAL--AIPVGKVISSPYCRAWETAQLAFGRH- 118 (206)
T ss_pred CCEEEEEeCccCCCCccCCcccccccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHhccc-
Confidence 4789999999999887766655 3599999999999999998765 56799999999999999999984321
Q ss_pred cccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecC
Q 005233 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQ 706 (707)
Q Consensus 632 ~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~~~~ILVVSHg 706 (707)
.....+++. ....+.+|+...+.+|+..+|+++....++|+||+|+
T Consensus 119 ~~~~~l~~~-----------------------------~~~~~~~~~~~~y~~~l~~~I~~l~~~~~~vLlVgHn 164 (206)
T PRK06193 119 EKEIRLNFL-----------------------------NSEPVPAERNALLKAGLRPLLTTPPDPGTNTVLVGHD 164 (206)
T ss_pred ccCcccccc-----------------------------cccCCChhhHHHHHHHHHHHHhhCCCCCCeEEEEeCc
Confidence 000001000 0112245788888899999999998778899999997
No 40
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.7e-14 Score=143.47 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=111.0
Q ss_pred CceEEEeccccccccCCCCcCC---------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc--
Q 005233 559 PRPILLTRHGESRDNVRGRIGG---------DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-- 627 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G---------D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~-- 627 (707)
.++||||||||..+|+.+.-.- |+.||+.|++|+..|+..+.+.--..+++.|++|||+||+||+....
T Consensus 14 ~KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ieliv~SPMrRtLqT~v~~f~~ 93 (248)
T KOG4754|consen 14 CKTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIVVSPMRRTLQTMVIAFGG 93 (248)
T ss_pred ceEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHHHHhhhhhhhhcCCceeEEEechHHHHHHHHHHHhcc
Confidence 6899999999999998753211 89999999999999999876542234599999999999999999872
Q ss_pred --------CCCccccccc----cc-cccCcCC-CCCHHHHHHhChHH-HHHHhcC-cCCCCCCCCCCHHHHHHHHHHHHH
Q 005233 628 --------GFPKIQWRAL----DE-INAGVCD-GMTYEEIKKNMPEE-YEARKKD-KLRYRYPRGESYLDVIQRLEPVII 691 (707)
Q Consensus 628 --------g~~v~~~~~L----~E-i~~G~~e-Glt~~ei~~~~P~~-~~~~~~d-~~~~r~PgGES~~dv~~Rv~~~l~ 691 (707)
..++.+.|.+ +| +.--.|+ +.+..+.++.||.. |..-..+ .+.+.+--.|++.+.+.|-..+++
T Consensus 94 ~~~e~g~~~~p~~vsp~~i~~~rE~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r~re~~~ 173 (248)
T KOG4754|consen 94 YLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAARSREFLE 173 (248)
T ss_pred eeccCCCcCCceeecchHHHHHHHHhCCCcccccchhHHHHhhcccccceeeccCcchhccCcchhhHHHHHHhHHHHHH
Confidence 1345555666 77 5555565 55788899988842 2111111 223334456999999999999999
Q ss_pred HHHcC-CCcEEEEecCC
Q 005233 692 ELERQ-RAPVVVISHQC 707 (707)
Q Consensus 692 eL~~~-~~~ILVVSHgg 707 (707)
++... .+.|.||+|+|
T Consensus 174 ~l~~r~ek~iavvths~ 190 (248)
T KOG4754|consen 174 WLAKRPEKEIAVVTHSG 190 (248)
T ss_pred HHHhCccceEEEEEehH
Confidence 99764 67799999986
No 41
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=99.55 E-value=1.7e-14 Score=130.93 Aligned_cols=96 Identities=24% Similarity=0.315 Sum_probs=81.5
Q ss_pred eEEEEEEEee-cccCCCceeEEecCCCccCCCCcc--ccc-ccccccCCeeEEEEEeCCCCCceeeeEEEeeCCCCCceE
Q 005233 30 QFYVSLKMVN-IKLKGDLIPHVYGSVPLVGSWDSS--KAL-AMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (707)
Q Consensus 30 ~~~~~~k~~~-p~l~~~~~~~i~Gs~p~lG~W~~~--kal-~m~~~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~ 105 (707)
|+-|.|.+.+ |.+..++.+.|+||+|.||+|++. +|+ +|.....+.|.+++++|... ++||||++++.+ + .+.
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~-~veyK~v~~~~~-g-~v~ 78 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGT-YIEFKFLKAPAD-G-TGT 78 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCC-cEEEEEEEECCC-C-CEE
Confidence 5668899976 689999999999999999999996 456 89999999999999999986 899999999766 3 456
Q ss_pred eecCCCccccCCCCCCCceEEEE
Q 005233 106 VEEGPNRLLTGGALQGDSRSALF 128 (707)
Q Consensus 106 ~E~g~NR~l~~~~~~~~~~~~~~ 128 (707)
||.|+||.+..|....++..+.+
T Consensus 79 WE~g~Nr~~~~p~~~~~~~~~~w 101 (103)
T cd05820 79 WEGGSNHAYTTPSGGTGTVTVTW 101 (103)
T ss_pred EEeCCCEeEECCCCCcEEEEEEe
Confidence 99999999998876665555443
No 42
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=99.53 E-value=4e-14 Score=127.51 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=75.5
Q ss_pred eEEEEEEEeecccCCCceeEEecCCCccCCCCcccc-cccc-cccCCeeEEEEEeCCCCCceeeeEEEeeCCCCCceEee
Q 005233 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKA-LAMG-RESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVE 107 (707)
Q Consensus 30 ~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~ka-l~m~-~~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~~E 107 (707)
|+-|.||+.++++..++.++|+||+|.||+|++.++ +.|. ....+.|++++++|... ++||||++++.+.. .+.||
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~-~veyKyv~~~~~~~-~~~WE 79 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGR-NIEFKAIKKSKDGT-NKSWQ 79 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCC-cEEEEEEEEcCCCC-eeEEe
Confidence 678999999999999999999999999999999863 5554 35578999999999985 79999999986633 45599
Q ss_pred cCCCccccCCC
Q 005233 108 EGPNRLLTGGA 118 (707)
Q Consensus 108 ~g~NR~l~~~~ 118 (707)
.|+||.+..|.
T Consensus 80 ~g~nr~~~~p~ 90 (99)
T cd05809 80 GGQQSWYPVPL 90 (99)
T ss_pred cCCCeeEECCC
Confidence 99999998876
No 43
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=99.53 E-value=3.7e-14 Score=126.09 Aligned_cols=83 Identities=24% Similarity=0.430 Sum_probs=73.2
Q ss_pred EEEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeEEEEEeCCCCCceeeeEEEeeCCCCCceEeecCCC
Q 005233 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPN 111 (707)
Q Consensus 32 ~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~~E~g~N 111 (707)
-|-|++.+ .+..++.+.|+||+|.||+|+++||++|.....+.|++++++|... ++||||++++.+ +. ..||.|+|
T Consensus 2 ~v~F~v~~-~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~-~~eYKy~~~~~~-~~-~~WE~~~n 77 (95)
T cd05808 2 AVTFNVTA-TTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGT-AIEYKYIKKDGS-GT-VTWESGPN 77 (95)
T ss_pred eEEEEEEE-ECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCC-eEEEEEEEECCC-Cc-EEEecCCC
Confidence 37788888 7788999999999999999999999999999999999999999876 799999988643 34 45999999
Q ss_pred ccccCCC
Q 005233 112 RLLTGGA 118 (707)
Q Consensus 112 R~l~~~~ 118 (707)
|.+..|.
T Consensus 78 r~~~~~~ 84 (95)
T cd05808 78 RTATTPA 84 (95)
T ss_pred EEEECCC
Confidence 9988653
No 44
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=99.50 E-value=8.1e-14 Score=125.77 Aligned_cols=84 Identities=24% Similarity=0.356 Sum_probs=70.2
Q ss_pred EEEEEeecccCCCceeEEecCCCccCCCCcccccccccc---cCCeeEEEEEeCCCCCceeeeEEEeeCCCCCceEeecC
Q 005233 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE---SASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEG 109 (707)
Q Consensus 33 ~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~---~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~~E~g 109 (707)
|.|++... ...++.++|+||+|.||+|++++|++|... +.+.|++++++|. ..++||||++++. +.+.+.||.|
T Consensus 2 l~f~i~~~-t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~~~veYky~v~~~-~~~~~~wE~g 78 (101)
T cd05815 2 LSFKLPYY-TQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-GFSSEYNYYVVDD-RKSVLRSESG 78 (101)
T ss_pred EEEEEEEE-ccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-CCcEEEEEEEEcC-CCcEEEeecC
Confidence 56776654 556789999999999999999999999764 3458999999999 5789999999875 5666779999
Q ss_pred CCccccCCCC
Q 005233 110 PNRLLTGGAL 119 (707)
Q Consensus 110 ~NR~l~~~~~ 119 (707)
+||.+..+..
T Consensus 79 ~nr~~~~~~~ 88 (101)
T cd05815 79 EKRKLVLPEG 88 (101)
T ss_pred CCEeEECCcc
Confidence 9999887763
No 45
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=99.50 E-value=9.6e-14 Score=126.25 Aligned_cols=90 Identities=24% Similarity=0.447 Sum_probs=76.6
Q ss_pred CCeEEEEEEEeecccCCCceeEEecCCCccCCCCccccccccccc----CCeeEEEEEeCCCCCceeeeEEEeeCCCCCc
Q 005233 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES----ASMWELSFVVPPNHETLDFKFLLKPKYGNGP 103 (707)
Q Consensus 28 ~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~----~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~ 103 (707)
+++.-|.|++.++. ..++.+.|+||+|.||+|++.+|++|...+ .+.|.+++++|... +++|||++++.+ ..
T Consensus 4 ~~~v~V~F~i~~~t-~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~-~veYKy~~~~~~--~~ 79 (106)
T cd05811 4 ATTVAVTFNERVTT-SYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGT-SFEYKFIRKESD--GS 79 (106)
T ss_pred CCEEEEEEEEeeEc-CCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCC-cEEEEEEEEcCC--Cc
Confidence 45677999999975 678899999999999999999999998753 58999999999954 699999998655 45
Q ss_pred eEeecCCCccccCCCCCC
Q 005233 104 CIVEEGPNRLLTGGALQG 121 (707)
Q Consensus 104 ~~~E~g~NR~l~~~~~~~ 121 (707)
+.||+|+||.+..|....
T Consensus 80 ~~WE~~~nr~~~~~~~~~ 97 (106)
T cd05811 80 VTWESDPNRSYTVPSGCG 97 (106)
T ss_pred EEEecCCCeEEECCCCCC
Confidence 679999999998886544
No 46
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=99.50 E-value=1.7e-13 Score=132.66 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=55.1
Q ss_pred ceEEEeccccccccCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh
Q 005233 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i 626 (707)
|+|||||||++.++.. -..|.+||+.|++||+.++++|... +..++.|||||+.||+|||+++
T Consensus 1 m~l~LvRHg~a~~~~~--~d~dr~Lt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l 63 (152)
T TIGR00249 1 MQLFIMRHGDAALDAA--SDSVRPLTTNGCDESRLVAQWLKGQ--GVEIERILVSPFVRAEQTAEIV 63 (152)
T ss_pred CEEEEEeCCCcccccC--CCCCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHH
Confidence 5799999999998764 2238899999999999999998764 4578999999999999999998
No 47
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.49 E-value=5e-14 Score=131.24 Aligned_cols=83 Identities=19% Similarity=0.422 Sum_probs=73.8
Q ss_pred EEEEEeecccCCCceeEEecCCCccCCCCcccccccccc--cCCeeEEEEEeCCCCCceeeeEEEeeC----CCCCce--
Q 005233 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE--SASMWELSFVVPPNHETLDFKFLLKPK----YGNGPC-- 104 (707)
Q Consensus 33 ~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~--~~~~W~ls~~~~~~~~~leyKf~l~~~----~~~~~~-- 104 (707)
|-|++.+|++..++.++|+||+|.||+|++.+|++|... ..+.|+.++++|... +++|||++++. .+..++
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~-~veYkY~~~~~~~~~~~~~~~~~ 81 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGV-DFQYRYFVAVVLNDSGPCQVIVR 81 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCC-eEEEEEEEEEeccCCCCccEEEe
Confidence 789999999999999999999999999999999999998 789999999999977 69999999875 333565
Q ss_pred EeecCCC-ccccC
Q 005233 105 IVEEGPN-RLLTG 116 (707)
Q Consensus 105 ~~E~g~N-R~l~~ 116 (707)
.||.++| |.+..
T Consensus 82 ~WE~~~~~R~~~~ 94 (120)
T cd05814 82 KWETHLQPRSIKP 94 (120)
T ss_pred eccCCCCccEecc
Confidence 8999999 66553
No 48
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.46 E-value=2.9e-13 Score=120.80 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=72.1
Q ss_pred EEEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeEEEEEeCCCCCceeeeEEEeeCCCCCceEeecCCC
Q 005233 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGPN 111 (707)
Q Consensus 32 ~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~~E~g~N 111 (707)
-|.|++.+|.+.+++.+.|+||+|.||+|++ +++|...+.+.|+.++++|... +++|||++++ +.....||.|+|
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~--~~~l~~~~~~~W~~~v~lp~~~-~ieYky~~~~--~~~~~~WE~~~n 76 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHS--YIPLQYVKDGFWSASVSLPVDT-HVEWKFVLVE--NGQVTRWEECSN 76 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCc--cccCcCCCCCCEEEEEEecCCC-cEEEEEEEEc--CCCEEEeecCCC
Confidence 4889999999999999999999999999996 7899999999999999999987 7999999965 457778999999
Q ss_pred cccc
Q 005233 112 RLLT 115 (707)
Q Consensus 112 R~l~ 115 (707)
|.+.
T Consensus 77 r~~~ 80 (95)
T cd05813 77 RLLE 80 (95)
T ss_pred eEEE
Confidence 9988
No 49
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.44 E-value=4e-12 Score=135.11 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=99.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCC-CCCCCHH-HHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNPE-GMEARNEVAALAMEDMIS 428 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f-~~~~~e~-~~~~~~~vA~~~l~d~~~ 428 (707)
+.+|+|+|+|||||||+|++|++++. ....++.|++|+...+......+ +....+. ......+.+..++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----- 72 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAAL----- 72 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHH-----
Confidence 57999999999999999999999872 34567778888866543322111 1111121 1122222222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 005233 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~ 507 (707)
..|..+|+|+++..+..|+.+.++ .++++.+.++.+.| +.+++.+|+..|.. .. .+++.++.+++|++
T Consensus 73 ---~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~------~~-~~~~~i~~~~~~~~ 141 (300)
T PHA02530 73 ---KSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGE------RA-VPEDVLRSMFKQMK 141 (300)
T ss_pred ---HcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCc------CC-CCHHHHHHHHHHHH
Confidence 368899999999999999999988 67778777777666 57788888877622 12 46778888899999
Q ss_pred hhhhhccCC
Q 005233 508 NYEKVYEPV 516 (707)
Q Consensus 508 ~y~~~yEpl 516 (707)
.|...-.|+
T Consensus 142 ~~~~~~~p~ 150 (300)
T PHA02530 142 EYRGLVWPV 150 (300)
T ss_pred HhcCCCCce
Confidence 886543333
No 50
>PLN02950 4-alpha-glucanotransferase
Probab=99.42 E-value=4.2e-13 Score=161.11 Aligned_cols=101 Identities=24% Similarity=0.391 Sum_probs=91.6
Q ss_pred CCCCeEEEEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeEEEEEeCCCCCceeeeEEEeeCCCCCceE
Q 005233 26 HAGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (707)
Q Consensus 26 ~~~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~ 105 (707)
..+++.-|.||+.||++..++.+.|+||+|.||+|++++|+.|...+.+.|++++++|+..+++||||++++.+ + .+.
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~-g-~v~ 225 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAE-G-LVS 225 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCC-C-ceE
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999965 3 466
Q ss_pred eecCCCccccCCCCCCCceEEEE
Q 005233 106 VEEGPNRLLTGGALQGDSRSALF 128 (707)
Q Consensus 106 ~E~g~NR~l~~~~~~~~~~~~~~ 128 (707)
||.|+||.+..|...+++..+++
T Consensus 226 WE~g~NR~~~~p~~~~~~~~~~~ 248 (909)
T PLN02950 226 LELGVNRELSLDSSSGKPPSYIV 248 (909)
T ss_pred EeeCCCceeecCcccCCceEEEe
Confidence 99999999999988877755543
No 51
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.42 E-value=1.5e-12 Score=127.08 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=54.2
Q ss_pred ceEEEeccccccccCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh
Q 005233 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i 626 (707)
|+|||||||++.++.. ...|.|||++|++||+.++.+|... ...++.|||||+.||+|||+++
T Consensus 1 m~l~lvRHg~a~~~~~--~d~~rpLt~~G~~qa~~~~~~l~~~--~~~~d~i~sSp~~Ra~qTa~~l 63 (159)
T PRK10848 1 MQVFIMRHGDAALDAA--SDSVRPLTTCGCDESRLMANWLKGQ--KVDIERVLVSPYLRAEQTLEVV 63 (159)
T ss_pred CEEEEEeCCCCCCCCC--CCcCCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHH
Confidence 5799999999998742 1126799999999999999998754 4578999999999999999998
No 52
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.42 E-value=7.8e-13 Score=117.67 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=68.4
Q ss_pred EEEEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeEEEEEeCCCCCceeeeEEEeeCCCCCceEeecCC
Q 005233 31 FYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEEGP 110 (707)
Q Consensus 31 ~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~~E~g~ 110 (707)
+.|.|++.... ..++.+.|+||+|.||+|++ +++|... .+.|++++++|... ++||||++++.+. .+.||.|+
T Consensus 2 ~~v~F~~~~~~-~~Gq~l~v~G~~~~LG~W~~--~~~l~~~-~~~W~~~~~l~~~~-~ieyKy~~~~~~~--~v~WE~g~ 74 (92)
T cd05818 2 VKLQVRLDHQV-KFGEHVAILGSTKELGSWKK--KVPMNWT-ENGWVCDLELDGGE-LVEYKFVIVKRDG--SVIWEGGN 74 (92)
T ss_pred EEEEEEEEEEc-CCCCEEEEEeChHHHCCCCC--CCccccC-CCCEEEEEEeCCCC-cEEEEEEEEcCCC--CEEEEeCC
Confidence 45778887654 67889999999999999994 5677765 46799999999985 8999999998663 45699999
Q ss_pred CccccCCCCC
Q 005233 111 NRLLTGGALQ 120 (707)
Q Consensus 111 NR~l~~~~~~ 120 (707)
||.+..|...
T Consensus 75 Nr~~~~~~~~ 84 (92)
T cd05818 75 NRVLELPKEG 84 (92)
T ss_pred CEEEEccCCC
Confidence 9999987553
No 53
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.41 E-value=2.1e-12 Score=124.47 Aligned_cols=113 Identities=22% Similarity=0.189 Sum_probs=84.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
+|+|+|+|||||||+|+.|++.+.+.+.+...++.|.+|+.+.. ...|..+.+.+.++.....++. +.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~---~~~~~~~~~~~~~~~~~~~a~~--------l~~ 69 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNK---DLGFSREDREENIRRIAEVAKL--------LAD 69 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhh---ccCCCcchHHHHHHHHHHHHHH--------HHh
Confidence 58999999999999999999999888888888888888874432 2234444455555544444443 334
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHH
Q 005233 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 477 (707)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~ 477 (707)
.|.+||+|+++..+..|..++++.+ ++++.++.+.|+.+++.+|
T Consensus 70 ~G~~VIid~~~~~~~~R~~~~~l~~-~~~~~~i~l~~~~e~~~~R 113 (149)
T cd02027 70 AGLIVIAAFISPYREDREAARKIIG-GGDFLEVFVDTPLEVCEQR 113 (149)
T ss_pred CCCEEEEccCCCCHHHHHHHHHhcC-CCCEEEEEEeCCHHHHHHh
Confidence 8999999999999999999998855 6788888888875444333
No 54
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.41 E-value=2.1e-12 Score=147.10 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=96.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
..|.||+|+|+|||||||+|+.+++.+++.. +|.|.+.. +......|..+|.
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~-----vn~D~lg~-------------------~~~~~~~a~~~L~---- 418 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKH-----VNADTLGS-------------------TQNCLTACERALD---- 418 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeE-----ECcHHHHH-------------------HHHHHHHHHHHHh----
Confidence 4689999999999999999999998765544 44433311 2223344555444
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 005233 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~ 507 (707)
.|..||+|+||.+++.|+.+.++ .++|+++.++.+.++ .+++++|++.|.. .+.++..-++.++ .
T Consensus 419 ----~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p-~e~~~~Rn~~R~~--~~~s~~~vp~~v~-------~ 484 (526)
T TIGR01663 419 ----QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP-LAQAKHNIAFREL--SDSAHIKIKDMVF-------N 484 (526)
T ss_pred ----CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHhhcc--CCcccCCCCHHHH-------H
Confidence 79999999999999999999999 888999999998885 6777788777754 2333331234443 4
Q ss_pred hhhhhccCCCCC---CeeEEeec
Q 005233 508 NYEKVYEPVDEG---SYIKMIDM 527 (707)
Q Consensus 508 ~y~~~yEpl~e~---~yik~in~ 527 (707)
.|.+.|||++.. .-|..||+
T Consensus 485 ~~~k~fE~Pt~~EGF~~I~~v~f 507 (526)
T TIGR01663 485 GMKKKFEAPALAEGFIAIHEINF 507 (526)
T ss_pred HHHhhCCCCCcccCceEEEEEeC
Confidence 556667776533 44555666
No 55
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.41 E-value=8e-13 Score=152.52 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=115.2
Q ss_pred cccccCCCCCccchhhHHhhhhcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhHHHhhCCC
Q 005233 320 DTETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYRRLKHGVN 398 (707)
Q Consensus 320 ~~~~~~~~p~~~~~~a~~~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~ddyRr~~~g~~ 398 (707)
+.......|++...+..++++.....+...++.+|||+|+|||||||+|+.|++.|++ .+..+..++.|..|+.+.
T Consensus 361 ~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~--- 437 (568)
T PRK05537 361 RLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS--- 437 (568)
T ss_pred HHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc---
Confidence 3456888999999999999999998888889999999999999999999999999997 777788888888877443
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHH
Q 005233 399 QSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIER 477 (707)
Q Consensus 399 ~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~ 477 (707)
....|...+++..++.+..++..++. .|.+||+|++++.++.|+.++++ .+.+ .+++|.+.++ .+++.+
T Consensus 438 ge~~f~~~er~~~~~~l~~~a~~v~~--------~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p-~e~l~~ 507 (568)
T PRK05537 438 SELGFSKEDRDLNILRIGFVASEITK--------NGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATP-LEVCEQ 507 (568)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHh--------CCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCC-HHHHHH
Confidence 33456555566666666566665544 89999999999999999999998 4444 3444555554 566666
Q ss_pred HH
Q 005233 478 NI 479 (707)
Q Consensus 478 rI 479 (707)
|+
T Consensus 508 R~ 509 (568)
T PRK05537 508 RD 509 (568)
T ss_pred hc
Confidence 65
No 56
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.2e-12 Score=136.24 Aligned_cols=149 Identities=22% Similarity=0.201 Sum_probs=107.1
Q ss_pred cCCCceEEEeccccccccCCCC------------c------------------CC---CCCCCHHHHHHHHHHHHHHHHH
Q 005233 556 HLTPRPILLTRHGESRDNVRGR------------I------------------GG---DTILSDAGEIYAKKLANFVEKR 602 (707)
Q Consensus 556 ~~~~~~IyLIRHGes~~N~~~~------------~------------------~G---D~pLTe~G~~QA~~Lg~~L~~~ 602 (707)
+...+.|++|||||+.++.-+. + .+ |+|||..|.-|++..|+.|...
T Consensus 9 ~~~~~~i~vmRHgERvD~if~~~W~~~~~~~~~~y~~~d~n~p~~l~qr~~~~~~y~~d~pit~~g~~~~~~~gr~l~~a 88 (272)
T KOG3734|consen 9 IDVPRNIFVMRHGERVDNIFGKLWLKTCARPDGKYVPDDMNMPFRLPQRIRSPKGYPIDPPITVSGFIQCKLIGRELLNA 88 (272)
T ss_pred cCCCceEEEEEcccccccccchhhhhhhcCCCCCcCCCCccCCccccccccCcccCccCCCccchhHHHHHHHHHHHHhc
Confidence 4456889999999997732211 1 01 8999999999999999999876
Q ss_pred hcCCCCCEEEEcCcHHHHHHHHHh---cC----CCccccccccccccCcC----C-CCCHHHHHHhChHHHHHHhcCcCC
Q 005233 603 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINAGVC----D-GMTYEEIKKNMPEEYEARKKDKLR 670 (707)
Q Consensus 603 l~~~~~d~I~TSPl~RAiQTA~~i---~g----~~v~~~~~L~Ei~~G~~----e-Glt~~ei~~~~P~~~~~~~~d~~~ 670 (707)
+..++.|||||..||+|||..+ .+ ..+.++|.|-|...-.- + -.+..++....+..-..+. --+.
T Consensus 89 --~~~i~~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~is~~el~~~~~~VD~~y~-P~~~ 165 (272)
T KOG3734|consen 89 --GIAIDVIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGFPVDLNYD-PVYK 165 (272)
T ss_pred --CCCcceeecCCchhHHHHHHHHHHhhchhcCeeEEecchhcchhhhcccCCCCCcCCHHHHhccCCCcccccc-hhhh
Confidence 7789999999999999999998 33 67788899998643211 2 2345555543321000000 0011
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecCC
Q 005233 671 YRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQC 707 (707)
Q Consensus 671 ~r~PgGES~~dv~~Rv~~~l~eL~~~--~~~ILVVSHgg 707 (707)
..+-++||++++.+|+..++.+|..+ +++||||+||.
T Consensus 166 ~~~~~~es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~ 204 (272)
T KOG3734|consen 166 ETPRWGESLEDCNDRIQKVFKAIADKYPNENLLIVAHGS 204 (272)
T ss_pred hcccccccHHHHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 23457899999999999999999775 66799999984
No 57
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.37 E-value=3.4e-12 Score=124.53 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=59.5
Q ss_pred CceEEEeccccccccCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh
Q 005233 559 PRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i 626 (707)
||+|||+|||++.+...+.-..|.+||++|+++|+.+|++|+++ ...+|.|+|||..||+|||+.+
T Consensus 1 m~~L~LmRHgkA~~~~~~~~D~dR~Lt~~G~~ea~~~a~~L~~~--~~~~D~VL~Spa~Ra~QTae~v 66 (163)
T COG2062 1 MMRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQ--GVEPDLVLVSPAVRARQTAEIV 66 (163)
T ss_pred CceEEEeecccccccCCCCCCccCcCCHHHHHHHHHHHHHHHhc--CCCCCEEEeChhHHHHHHHHHH
Confidence 58899999999999876533348999999999999999999988 6689999999999999999998
No 58
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=99.36 E-value=2.7e-12 Score=129.24 Aligned_cols=80 Identities=20% Similarity=0.178 Sum_probs=56.6
Q ss_pred CCceEEEeccccccccCCCCcCC-CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc-CCCccccc
Q 005233 558 TPRPILLTRHGESRDNVRGRIGG-DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-GFPKIQWR 635 (707)
Q Consensus 558 ~~~~IyLIRHGes~~N~~~~~~G-D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~-g~~v~~~~ 635 (707)
..++||||||||+.+...+.... +.|||++|++||++++++|++. ...+.|||||+.||+|||+++. +.++..++
T Consensus 53 ~~~~L~LiRHGet~~~~~~~~~sD~RpLTerG~~qA~~lg~~L~~~---~~~d~I~sSpa~Ra~qTAe~ia~~~~v~~~~ 129 (201)
T PRK15416 53 QHPVVVLFRHAERCDRSDNQCLSDKTGITVKGTQDARELGKAFSAD---IPDYDLYSSNTVRTIQSATWFSAGKKLTVDK 129 (201)
T ss_pred CCCEEEEEeCccccCccCCCCCCCCCCCCHHHHHHHHHHHHHHhCC---CCCCEEEECCCHHHHHHHHHHhcCCCcEecH
Confidence 34669999999983222121111 3689999999999999988643 2347999999999999999983 33444444
Q ss_pred ccccc
Q 005233 636 ALDEI 640 (707)
Q Consensus 636 ~L~Ei 640 (707)
.|.|.
T Consensus 130 ~Lye~ 134 (201)
T PRK15416 130 RLSDC 134 (201)
T ss_pred HHhhc
Confidence 44443
No 59
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.34 E-value=5.8e-12 Score=119.94 Aligned_cols=109 Identities=25% Similarity=0.334 Sum_probs=95.3
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
.++..+|||+||+||||||+|-+|.++|...|.-++++++|+. ++|.+.+.+|..+++.++.+++.++|+..
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNv---RhGLN~DL~F~a~dR~ENIRRigeVaKLF----- 99 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNV---RHGLNKDLGFKAEDRNENIRRIGEVAKLF----- 99 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccc---ccccccccCcchhhhhhhHHHHHHHHHHH-----
Confidence 4678999999999999999999999999999999999999777 57999999999999999999999999984
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeC
Q 005233 428 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICN 470 (707)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~ 470 (707)
++.|.+.|..-..+.+..|+..+++.+.+ -|||+..+
T Consensus 100 ---ADag~iciaSlISPYR~dRdacRel~~~~---~FiEvfmd 136 (207)
T KOG0635|consen 100 ---ADAGVICIASLISPYRKDRDACRELLPEG---DFIEVFMD 136 (207)
T ss_pred ---hccceeeeehhcCchhccHHHHHHhccCC---CeEEEEec
Confidence 44899999999999999999999994333 15555444
No 60
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.32 E-value=2.4e-11 Score=116.06 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=86.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG--VNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g--~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
||+|+|+|||||||+|+.|++.+++.. ++.|++++.... ......+.....+.....+.+.+.. .+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~-----i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l 68 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPF-----IDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLA-------KL 68 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEE-----EeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHH-------HH
Confidence 589999999999999999999876544 455555542100 0011112222233333333222221 22
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhh
Q 005233 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (707)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~ 510 (707)
...|..+|+|+++..+..|+.+..+. ++..+.++.+.|+ ++++++|+.+|... . . ..+.. ..+.
T Consensus 69 ~~~~~~vVid~~~~~~~~r~~~~~~~-~~~~~~~v~l~~~-~~~~~~R~~~R~~~---~--~-~~~~~--------~~~~ 132 (150)
T cd02021 69 ASAGEGVVVACSALKRIYRDILRGGA-ANPRVRFVHLDGP-REVLAERLAARKGH---F--M-PADLL--------DSQF 132 (150)
T ss_pred HhCCCCEEEEeccccHHHHHHHHhcC-CCCCEEEEEEECC-HHHHHHHHHhcccC---C--C-CHHHH--------HHHH
Confidence 23688899999999999998888887 6777888888885 77888888877432 1 1 22222 4455
Q ss_pred hhccCCCC
Q 005233 511 KVYEPVDE 518 (707)
Q Consensus 511 ~~yEpl~e 518 (707)
+.|||.++
T Consensus 133 ~~~~~p~~ 140 (150)
T cd02021 133 ETLEPPGE 140 (150)
T ss_pred HHhcCCCC
Confidence 67888775
No 61
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.31 E-value=1.6e-11 Score=127.77 Aligned_cols=112 Identities=21% Similarity=0.160 Sum_probs=77.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
||+|+|+|||||||+|++|+++|...++++.+++.|.+|+.... +....+.. ++.....++.-+.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~-------~~~~~e~~-------~~~~~~~~i~~~l~ 66 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV-------WKEKYEEF-------IRDSTLYLIKTALK 66 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH-------hhHHhHHH-------HHHHHHHHHHHHHh
Confidence 68999999999999999999999988888888988888764310 11111111 11111112222223
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHH
Q 005233 433 GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 478 (707)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~r 478 (707)
.|..||+|++|..+..|..+.++ ...++++..|.+.|+.+.+++||
T Consensus 67 ~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn 113 (249)
T TIGR03574 67 NKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRN 113 (249)
T ss_pred CCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHH
Confidence 67889999999999988888877 56677777777777655555444
No 62
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.30 E-value=2.3e-11 Score=120.65 Aligned_cols=118 Identities=25% Similarity=0.264 Sum_probs=85.9
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
...+.+|+|+|+|||||||+|+.|+..+...+..+..++.|++|+.+. ....|..+.+...++.+..++..
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~---~~~~~~~~~~~~~~~~~~~~~~~------ 85 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN---KDLGFSEEDRKENIRRIGEVAKL------ 85 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhc---cccCCCHHHHHHHHHHHHHHHHH------
Confidence 356889999999999999999999999987777778888888887543 22334444445455555444444
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHH
Q 005233 428 SWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 477 (707)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~ 477 (707)
+...|.+||+|++++.+..|+.++.+.+. .+++++.+.|+.+.+++|
T Consensus 86 --~~~~G~~VI~d~~~~~~~~r~~~~~~~~~-~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 86 --FVRNGIIVITSFISPYRADRQMVRELIEK-GEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred --HHcCCCEEEEecCCCCHHHHHHHHHhCcC-CCeEEEEEeCCHHHHHHh
Confidence 33489999999999999999999998432 255566667765444444
No 63
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=99.30 E-value=1.1e-11 Score=113.99 Aligned_cols=83 Identities=25% Similarity=0.330 Sum_probs=70.5
Q ss_pred EEEEEEeecccCCCceeEEecCCCccCCCCcccccccccc-------cCCeeEEEEEeCCCC--CceeeeEEEeeCCCCC
Q 005233 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE-------SASMWELSFVVPPNH--ETLDFKFLLKPKYGNG 102 (707)
Q Consensus 32 ~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~-------~~~~W~ls~~~~~~~--~~leyKf~l~~~~~~~ 102 (707)
-|.|.|-+--+.+++.+.|+||.|.||+||+++|++|... ..+.|++++++|... .++||||+.++ ++
T Consensus 2 ~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~~~--~~- 78 (112)
T cd05806 2 LFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLKRE--AG- 78 (112)
T ss_pred EEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEEeC--CC-
Confidence 3678888877889999999999999999999999999987 557899999999974 79999999866 33
Q ss_pred ceEee---cCCCccccCC
Q 005233 103 PCIVE---EGPNRLLTGG 117 (707)
Q Consensus 103 ~~~~E---~g~NR~l~~~ 117 (707)
.+.|| .++||.+...
T Consensus 79 ~v~WE~~~~~~nr~~~~~ 96 (112)
T cd05806 79 ALIWEGNGPHHDRCCVYD 96 (112)
T ss_pred eeEEecCCCCCCeEEecc
Confidence 56699 7799986544
No 64
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.30 E-value=8.5e-12 Score=122.60 Aligned_cols=138 Identities=20% Similarity=0.267 Sum_probs=97.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
=|+|+|+||+||||+++.||+.|+...+++|.+ -....+ -.-..+|...++..|+.++..+...+- .
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~-----Ie~~~g-~sI~eIF~~~GE~~FR~~E~~vl~~l~------~- 70 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE-----IEKRTG-MSIAEIFEEEGEEGFRRLETEVLKELL------E- 70 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH-----HHHHHC-cCHHHHHHHHhHHHHHHHHHHHHHHHh------h-
Confidence 489999999999999999999999888777765 333333 233568888999999988864443222 1
Q ss_pred CCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCCh-HHHHHHHHHHHHhh
Q 005233 433 GGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLANY 509 (707)
Q Consensus 433 ~G~vVIlDAtn--~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~-e~a~~df~~Ri~~y 509 (707)
.+..||--+.. ..++.|+.+ .+.+ .++||+ .+.+++.+|+... ..+|.+.+. ++ +.+.+.|.+|.+.|
T Consensus 71 ~~~~ViaTGGG~v~~~enr~~l---~~~g-~vv~L~---~~~e~l~~Rl~~~-~~RPll~~~-~~~~~l~~L~~~R~~~Y 141 (172)
T COG0703 71 EDNAVIATGGGAVLSEENRNLL---KKRG-IVVYLD---APFETLYERLQRD-RKRPLLQTE-DPREELEELLEERQPLY 141 (172)
T ss_pred cCCeEEECCCccccCHHHHHHH---HhCC-eEEEEe---CCHHHHHHHhccc-cCCCcccCC-ChHHHHHHHHHHHHHHH
Confidence 33344432222 123344433 4444 577876 5789999999844 458999988 88 66888899999999
Q ss_pred hhh
Q 005233 510 EKV 512 (707)
Q Consensus 510 ~~~ 512 (707)
++.
T Consensus 142 ~e~ 144 (172)
T COG0703 142 REV 144 (172)
T ss_pred HHh
Confidence 875
No 65
>PRK06762 hypothetical protein; Provisional
Probab=99.30 E-value=2.6e-11 Score=117.90 Aligned_cols=114 Identities=15% Similarity=0.041 Sum_probs=77.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
|.+|+|+|+|||||||+|+.|+++++ ....+++.|.+|+.+...... .+......+.+.++. .
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~D~~r~~l~~~~~~------~~~~~~~~~~~~~~~--------~ 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQDVVRRDMLRVKDG------PGNLSIDLIEQLVRY--------G 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEecHHHHHHHhccccCC------CCCcCHHHHHHHHHH--------H
Confidence 67999999999999999999999973 356678888998754322111 111122223333333 3
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005233 431 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 482 (707)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r 482 (707)
.+.|.+||+|+++.....|..+..+ ...++++.++.+.++. ++..+|+..|
T Consensus 65 ~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~-e~~~~R~~~R 116 (166)
T PRK06762 65 LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSF-EETLRRHSTR 116 (166)
T ss_pred HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCH-HHHHHHHhcc
Confidence 3378999999999888888888888 5566666666666754 4555555444
No 66
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.29 E-value=4.8e-11 Score=126.02 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=73.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-NEVAALAMEDMISWMH 431 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~-~~vA~~~l~d~~~~L~ 431 (707)
||+|||+|||||||+|+.|.+++...+.++.+++.+..+ .... .|.+...++..+.. ...+..+ |.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-----~~~~-~y~~~~~Ek~~R~~l~s~v~r~-------ls 69 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-----IDRN-DYADSKKEKEARGSLKSAVERA-------LS 69 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH------TTS-SS--GGGHHHHHHHHHHHHHHH-------HT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-----cchh-hhhchhhhHHHHHHHHHHHHHh-------hc
Confidence 899999999999999999999999988999999765554 1122 24444444433221 1122222 22
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHH
Q 005233 432 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRL 481 (707)
Q Consensus 432 ~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~ 481 (707)
...+||+|+.|..+..|..+..+ ++.+..+..|.|.|+.+.++++|..+
T Consensus 70 -~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R 119 (270)
T PF08433_consen 70 -KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKR 119 (270)
T ss_dssp -T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHT
T ss_pred -cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhcc
Confidence 46899999999999999999999 78888888899999888888888543
No 67
>COG4639 Predicted kinase [General function prediction only]
Probab=99.26 E-value=3.9e-11 Score=115.28 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=84.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
+.|++|+|+|||||||+|+.. ....++++.++.|+.+ |......-.....+...+.+.+.+.+.++
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n-------~~~~~~lsld~~r~~l-g~~~~~e~sqk~~~~~~~~l~~~l~qrl~------ 67 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN-------FLQNYVLSLDDLRLLL-GVSASKENSQKNDELVWDILYKQLEQRLR------ 67 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh-------CCCcceecHHHHHHHh-hhchhhhhccccHHHHHHHHHHHHHHHHH------
Confidence 469999999999999999764 3567789999998844 21111111222233455666666666665
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHH
Q 005233 431 HEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 478 (707)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~r 478 (707)
.|...|+||||..++.|+.+..+ ..+++.+++|++..+...+++||
T Consensus 68 --~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRN 114 (168)
T COG4639 68 --RGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARN 114 (168)
T ss_pred --cCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHh
Confidence 79999999999999999999999 88999999999998766666666
No 68
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.25 E-value=8e-11 Score=115.69 Aligned_cols=115 Identities=19% Similarity=0.167 Sum_probs=82.4
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
+++.+|+|+|+|||||||+|+.|++.|...+.++.+++.|..|+.+.. ...+..++++..++....++..+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~---~~~~~~~~r~~~~~~~~~~a~~~~----- 73 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSK---GLGFSKEDRDTNIRRIGFVANLLT----- 73 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhc---CCCCChhhHHHHHHHHHHHHHHHH-----
Confidence 456799999999999999999999999888888888888888775431 223444555655665555555433
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHH
Q 005233 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIER 477 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~ 477 (707)
..|.+||+|++++.+..|+.++.+.. ++.++.+.|+.+++.+|
T Consensus 74 ---~~g~~vi~~~~~~~~~~~~~l~~~~~---~~~~v~l~~~~e~~~~R 116 (175)
T PRK00889 74 ---RHGVIVLVSAISPYRETREEVRANIG---NFLEVFVDAPLEVCEQR 116 (175)
T ss_pred ---hCCCEEEEecCCCCHHHHHHHHhhcC---CeEEEEEcCCHHHHHHh
Confidence 37999999999988888877777642 34556666764444444
No 69
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.25 E-value=5.3e-11 Score=117.28 Aligned_cols=117 Identities=18% Similarity=0.134 Sum_probs=76.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC----CCC------CCC-CCHHHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----ADF------FRA-DNPEGMEARNEVAA 420 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~----~~f------~~~-~~e~~~~~~~~vA~ 420 (707)
.+|+|+|+|||||||+|+.|++.+.... ..++.|+|+..+...... ..+ +.+ .....|..+...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 79 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPW---LHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVA 79 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCc---cccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHH
Confidence 4899999999999999999999875321 234566666644321110 001 111 11234555555555
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCC-CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005233 421 LAMEDMISWMHEGGQVGIFDATNS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (707)
Q Consensus 421 ~~l~d~~~~L~~~G~vVIlDAtn~-~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r 482 (707)
.+++ .|..||+|+++. ....|+.++.+. +.++++|++.|++ +++.+|+..|
T Consensus 80 ~~l~--------~G~~VIvD~~~~~~~~~r~~~~~~~--~~~~~~v~l~~~~-~~l~~R~~~R 131 (175)
T cd00227 80 AMAR--------AGANVIADDVFLGRAALQDCWRSFV--GLDVLWVGVRCPG-EVAEGRETAR 131 (175)
T ss_pred HHHh--------CCCcEEEeeeccCCHHHHHHHHHhc--CCCEEEEEEECCH-HHHHHHHHhc
Confidence 5444 899999999998 677777777663 4678899999975 5666666655
No 70
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.22 E-value=4.4e-11 Score=119.54 Aligned_cols=134 Identities=21% Similarity=0.138 Sum_probs=87.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEA-RNEVAALAMEDMISWMH 431 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~-~~~vA~~~l~d~~~~L~ 431 (707)
||+++|+|||||||+|+.|++.|...++++..+ ..||++.... ..++. --.+.|+. ..+-+..++...+ +
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l-~kdy~~~i~~----DEslp-i~ke~yres~~ks~~rlldSal---k 73 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHL-EKDYLRGILW----DESLP-ILKEVYRESFLKSVERLLDSAL---K 73 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhcccc-chhhhhheec----ccccc-hHHHHHHHHHHHHHHHHHHHHh---c
Confidence 899999999999999999999999888777655 4567663321 11111 12222322 2222222333222 2
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 005233 432 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (707)
Q Consensus 432 ~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (707)
...||+|+||.....|.++... ++....+-+|.+.|+.+.++++|. .|. .| -+++.++.++.|+
T Consensus 74 --n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~-erg--ep------ip~Evl~qly~Rf 138 (261)
T COG4088 74 --NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNR-ERG--EP------IPEEVLRQLYDRF 138 (261)
T ss_pred --ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhc-cCC--CC------CCHHHHHHHHHhh
Confidence 6799999999999977777766 666777777888888777777773 221 12 4666665555543
No 71
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.22 E-value=1.4e-10 Score=116.64 Aligned_cols=119 Identities=25% Similarity=0.279 Sum_probs=90.6
Q ss_pred CCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005233 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (707)
Q Consensus 346 ~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d 425 (707)
+.+++|.+|+|+|+|||||||+|+.|++.|...+..+..++.|++|+.+.. ...|..+++.+.++.+.++|..++.
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~---~~~~~~~~~~~~~~~l~~~a~~~~~- 94 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS---DLGFSDADRKENIRRVGEVAKLMVD- 94 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh---cCCcCcccHHHHHHHHHHHHHHHhh-
Confidence 455689999999999999999999999999877888888988888864432 2345556666667776666666544
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHH
Q 005233 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 478 (707)
Q Consensus 426 ~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~r 478 (707)
.|.+||.+..++.++.|+.++++ .+.+ +++|.+.|+ .+++.+|
T Consensus 95 -------~G~~VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~~-~e~~~~R 138 (198)
T PRK03846 95 -------AGLVVLTAFISPHRAERQMVRERLGEGE--FIEVFVDTP-LAICEAR 138 (198)
T ss_pred -------CCCEEEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcCC-HHHHHhc
Confidence 79999999888899999999998 4443 445556676 4555555
No 72
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.21 E-value=3.5e-11 Score=141.17 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=92.3
Q ss_pred CCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005233 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (707)
Q Consensus 346 ~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d 425 (707)
+...+|.+|+|+|+|||||||+|++|+++|.+.+.....++.|++|+.+. ....|..+++...++.+.++|...++
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~---~~~~~~~~~r~~~~~~l~~~a~~~~~- 530 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN---RDLGFSDADRVENIRRVAEVARLMAD- 530 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC---CCCCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 44457999999999999999999999999998888889999999988543 23445555667777777666666555
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHH
Q 005233 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERN 478 (707)
Q Consensus 426 ~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~r 478 (707)
.|.+||+|++++.+..|+.++++.... .+.++.+.|+ .+.+.+|
T Consensus 531 -------~G~~Vivda~~~~~~~R~~~r~l~~~~-~~~~v~L~~~-~e~~~~R 574 (632)
T PRK05506 531 -------AGLIVLVSFISPFREERELARALHGEG-EFVEVFVDTP-LEVCEAR 574 (632)
T ss_pred -------CCCEEEEECCCCCHHHHHHHHHhcccC-CeEEEEECCC-HHHHHhh
Confidence 899999999999999999999884322 3455555554 5555655
No 73
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.15 E-value=5.4e-10 Score=108.34 Aligned_cols=114 Identities=19% Similarity=0.284 Sum_probs=68.6
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh-hHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd-yRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
|+|+|+|||||||+|+.|++.+++..++.|.+.... .++...+ ..+........+....+.+... +.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------l~- 68 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAG----IPLNDDDRWPWLQNLNDASTAA-------AA- 68 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcC----CCCChhhHHHHHHHHHHHHHHH-------Hh-
Confidence 579999999999999999999864443333331110 1222222 1222222333333333333332 22
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
.|..+|+|+|+..+..|+.++ .++..+.++.+.|+ .+++.+|++.|.
T Consensus 69 ~~~~~Vi~~t~~~~~~r~~~~---~~~~~~~~i~l~~~-~e~~~~R~~~R~ 115 (163)
T TIGR01313 69 KNKVGIITCSALKRHYRDILR---EAEPNLHFIYLSGD-KDVILERMKARK 115 (163)
T ss_pred cCCCEEEEecccHHHHHHHHH---hcCCCEEEEEEeCC-HHHHHHHHHhcc
Confidence 466678899998887777665 44556666666775 678888887774
No 74
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.15 E-value=4.7e-10 Score=109.79 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=89.4
Q ss_pred EccCCCChHHHHHHHHHHHhhcCCceEEEec-hhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 005233 357 VGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQ 435 (707)
Q Consensus 357 vGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~-ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~~G~ 435 (707)
.|+|||||||+|+.|+..++...++.|.+.. ..+|+...|. .+.+.........+...+... +..+|.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 69 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGE----PLNDDDRKPWLQALNDAAFAM-------QRTNKV 69 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCC----CCChhhHHHHHHHHHHHHHHH-------HHcCCc
Confidence 4999999999999999999876666665422 1123322221 121112222233333333321 223466
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhhhhccC
Q 005233 436 VGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEP 515 (707)
Q Consensus 436 vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~~~yEp 515 (707)
.||+ +++..+..|+.+++ .++++.||.|.|+ .+++++|++.|.. ++ . +++.+ ..|...|||
T Consensus 70 ~viv-~s~~~~~~r~~~~~---~~~~~~~v~l~a~-~~~l~~Rl~~R~~---~~--a-~~~vl--------~~Q~~~~ep 130 (163)
T PRK11545 70 SLIV-CSALKKHYRDLLRE---GNPNLSFIYLKGD-FDVIESRLKARKG---HF--F-KTQML--------VTQFETLQE 130 (163)
T ss_pred eEEE-EecchHHHHHHHHc---cCCCEEEEEEECC-HHHHHHHHHhccC---CC--C-CHHHH--------HHHHHHcCC
Confidence 6666 89998888876665 5677888888885 7899999998853 34 3 66766 556677899
Q ss_pred CCCC-CeeEEeec
Q 005233 516 VDEG-SYIKMIDM 527 (707)
Q Consensus 516 l~e~-~yik~in~ 527 (707)
+++. ..+..+|.
T Consensus 131 ~~~~e~~~~~id~ 143 (163)
T PRK11545 131 PGADETDVLVVDI 143 (163)
T ss_pred CCCCCCCEEEEeC
Confidence 8754 45666776
No 75
>PRK13948 shikimate kinase; Provisional
Probab=99.12 E-value=4.1e-10 Score=112.46 Aligned_cols=139 Identities=17% Similarity=0.103 Sum_probs=92.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEV-AALAMEDMIS 428 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~v-A~~~l~d~~~ 428 (707)
.+..|+|+|+|||||||+++.|++.|++..+++|. +++...|... ..+|....+..++.++.. +..++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~-----~ie~~~g~si-~~if~~~Ge~~fR~~E~~~l~~l~~---- 78 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDR-----YIERVTGKSI-PEIFRHLGEAYFRRCEAEVVRRLTR---- 78 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCH-----HHHHHHhCCH-HHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence 46799999999999999999999998877666654 4666665433 356777788888776643 333222
Q ss_pred HHhcCCeEEEEe--CCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 005233 429 WMHEGGQVGIFD--ATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (707)
Q Consensus 429 ~L~~~G~vVIlD--Atn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (707)
.+..||.- ++...++.|+.++ +.+ .++||. .+.+.+.+|+.. ..+|...+....+.+.+.|.+|.
T Consensus 79 ----~~~~VIa~GgG~v~~~~n~~~l~---~~g-~vV~L~---~~~e~l~~Rl~~--~~RPll~~~~~~~~l~~l~~~R~ 145 (182)
T PRK13948 79 ----LDYAVISLGGGTFMHEENRRKLL---SRG-PVVVLW---ASPETIYERTRP--GDRPLLQVEDPLGRIRTLLNERE 145 (182)
T ss_pred ----cCCeEEECCCcEEcCHHHHHHHH---cCC-eEEEEE---CCHHHHHHHhcC--CCCCCCCCCChHHHHHHHHHHHH
Confidence 34455542 4455666666544 344 467776 467888889843 34787765412455667777888
Q ss_pred Hhhhh
Q 005233 507 ANYEK 511 (707)
Q Consensus 507 ~~y~~ 511 (707)
+.|++
T Consensus 146 ~~Y~~ 150 (182)
T PRK13948 146 PVYRQ 150 (182)
T ss_pred HHHHh
Confidence 87754
No 76
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.10 E-value=4.2e-10 Score=107.31 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=81.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEG 433 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~~ 433 (707)
|+|+|+|||||||+|+.|+++|++..++.+ ++.+...+... ..++...++..++.++.- ++..+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d-----~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~-------~~~~~~~~ 68 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD-----ELIEQRAGMSI-PEIFAEEGEEGFRELERE-------VLLLLLTK 68 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch-----HHHHHHcCCCH-HHHHHHHCHHHHHHHHHH-------HHHHHhcc
Confidence 789999999999999999999887765554 44554443321 233333344444433321 11123334
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhhhh
Q 005233 434 GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKV 512 (707)
Q Consensus 434 G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~~~ 512 (707)
+..||....... ........+.. +..++||+ | +.+++.+|+..+. .+|.++.. .++.+.+.|.+|.+.|++.
T Consensus 69 ~~~vi~~g~~~i-~~~~~~~~~~~-~~~~i~l~--~-~~e~~~~R~~~r~-~r~~~~~~-~~~~~~~~~~~r~~~Y~~~ 140 (154)
T cd00464 69 ENAVIATGGGAV-LREENRRLLLE-NGIVVWLD--A-SPEELLERLARDK-TRPLLQDE-DPERLRELLEEREPLYREV 140 (154)
T ss_pred CCcEEECCCCcc-CcHHHHHHHHc-CCeEEEEe--C-CHHHHHHHhccCC-CCCCCCCC-CHHHHHHHHHHHHHHHHHh
Confidence 555554432221 11111112233 34466665 4 5788888988765 47877766 5666777788888888765
No 77
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.08 E-value=1.4e-09 Score=107.08 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=74.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
.|.+|+|+|+|||||||+|+.|+++|...+..+..++.+.+|+.... .+|......+...+...++. .
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~----~~~~~~~~~~~~~~~~~l~~--------~ 73 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGH----YGYDKQSRIEMALKRAKLAK--------F 73 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCC----CCCCHHHHHHHHHHHHHHHH--------H
Confidence 57899999999999999999999999877777888888888874321 12221112222222222222 2
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHH
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIR 480 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~ 480 (707)
+...|.+||+|+++..++.+..++.+.. .+ +.+.+.|+ ++++.+|+.
T Consensus 74 l~~~g~~VI~~~~~~~~~~~~~~~~~~~-~~--~~v~l~~~-~e~~~~R~~ 120 (176)
T PRK05541 74 LADQGMIVIVTTISMFDEIYAYNRKHLP-NY--FEVYLKCD-MEELIRRDQ 120 (176)
T ss_pred HHhCCCEEEEEeCCcHHHHHHHHHhhcC-Ce--EEEEEeCC-HHHHHHhch
Confidence 3347899999999987766777766632 22 23334454 566666654
No 78
>PRK00625 shikimate kinase; Provisional
Probab=99.08 E-value=4.1e-10 Score=111.52 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=83.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV---NQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~---~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
.|+|+|+|||||||+|+.|+++|++..+++ |++-+...+. .....+|....++.++..+..+...+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~-----D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l------ 70 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDT-----DDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSL------ 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEh-----hHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHh------
Confidence 589999999999999999999987665444 4444433332 12345566677777777765443322
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y 509 (707)
. ....||.++ .......+.+..+...+ .++|++ .+.+++.+|+..|.. .++.. ..+...+.|.+|.+.|
T Consensus 71 -~-~~~~VIs~G-Gg~~~~~e~~~~l~~~~-~Vv~L~---~~~e~l~~Rl~~R~~-~~~~~---~~~~~~~ll~~R~~~Y 139 (173)
T PRK00625 71 -P-VIPSIVALG-GGTLMIEPSYAHIRNRG-LLVLLS---LPIATIYQRLQKRGL-PERLK---HAPSLEEILSQRIDRM 139 (173)
T ss_pred -c-cCCeEEECC-CCccCCHHHHHHHhcCC-EEEEEE---CCHHHHHHHHhcCCC-CcccC---cHHHHHHHHHHHHHHH
Confidence 2 233444333 22222223333344433 477776 457888999876532 12121 3456677788999998
Q ss_pred hhh
Q 005233 510 EKV 512 (707)
Q Consensus 510 ~~~ 512 (707)
++.
T Consensus 140 ~~~ 142 (173)
T PRK00625 140 RSI 142 (173)
T ss_pred HHH
Confidence 763
No 79
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.05 E-value=1.1e-09 Score=119.05 Aligned_cols=128 Identities=19% Similarity=0.169 Sum_probs=80.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhHH-----HhhCCCCCCCCCCCCCHHHHHHHHHHHH------
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR-----LKHGVNQSADFFRADNPEGMEARNEVAA------ 420 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~ddyRr-----~~~g~~~~~~f~~~~~e~~~~~~~~vA~------ 420 (707)
+++|+|+||+||||+++.|++.|. ..|+++.+++.||+-. ...+... ...|...++...+.++..+.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~-~~~~k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREI-PSQWKQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCc-HHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 478999999999999999999997 6899999999988741 1111111 11111111111111111110
Q ss_pred ----------HHHHHHHHHHhc------------------------CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEE
Q 005233 421 ----------LAMEDMISWMHE------------------------GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFL 465 (707)
Q Consensus 421 ----------~~l~d~~~~L~~------------------------~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifI 465 (707)
.+..+....|++ .+..+|+|++|..+..|..+..+ ..+++.+..|
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V 159 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL 159 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 011111122322 34579999999999999999999 7778888888
Q ss_pred EEEeCCHHHHHHHHHHh
Q 005233 466 ETICNDRDIIERNIRLK 482 (707)
Q Consensus 466 E~~c~d~e~i~~rI~~r 482 (707)
.|.|+.+.+++|| ..|
T Consensus 160 ~ld~ple~~l~RN-~~R 175 (340)
T TIGR03575 160 FLDCPVESCLLRN-KQR 175 (340)
T ss_pred EEeCCHHHHHHHH-hcC
Confidence 8888755555554 444
No 80
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.03 E-value=7.9e-09 Score=104.50 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=79.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCC-----C------CCCCCCH-H---HHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-----D------FFRADNP-E---GMEA 414 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~-----~------f~~~~~e-~---~~~~ 414 (707)
.+.+|+++|+||+||||+|+.|++.++ +.. ++..|-.|+.+.+..... . .+.+... . .|..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~---~~~-~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~ 77 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRA---IDI-VLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLD 77 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC---CeE-EehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHH
Confidence 467999999999999999999999864 322 444444566554322211 0 1222221 1 1222
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 415 RNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 415 ~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
..+.+...+..+...+..+|.++|+|+++..++.++.... .+ +.++.+.+++++.+++|+..|..
T Consensus 78 q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~---~~--v~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 78 QARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRT---NN--IRAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHh---cC--eEEEEEEeCCHHHHHHHHHHHhh
Confidence 2233334455555555568999999999999988754322 23 34555566789999999998864
No 81
>PRK14532 adenylate kinase; Provisional
Probab=98.97 E-value=1.9e-09 Score=107.05 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=81.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-----ADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~-----~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
-|+|+|.|||||||+|+.|++++++.. ++.|+.-|.....+.. ..++..... . -.++...++.+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~-----is~~d~lr~~~~~~~~~~~~~~~~~~~g~~-~---~~~~~~~~~~~~~ 72 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ-----LSTGDMLRAAIASGSELGQRVKGIMDRGEL-V---SDEIVIALIEERL 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE-----EeCcHHHHHHHHcCCHHHHHHHHHHHCCCc-c---CHHHHHHHHHHHH
Confidence 488999999999999999999977655 4444443322111110 000000000 0 0011222222111
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhh--cCCCCCCCCChHHHHHHHH
Q 005233 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQ--QSPDYAEEPDFEAGLQDFK 503 (707)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r~~--~~pd~s~~~d~e~a~~df~ 503 (707)
.- ...+..+|+|+...+.++++.+.++ ...+..+ +.|.+.|+ ++++.+|+..|.. .++| .-.+.|.
T Consensus 73 ~~-~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~~~r~d--------d~~~~~~ 142 (188)
T PRK14532 73 PE-AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEEQGRPD--------DNPEVFV 142 (188)
T ss_pred hC-cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCcCCCCC--------CCHHHHH
Confidence 11 1246788999999999999988876 5555443 45666675 6777788876642 1222 2234567
Q ss_pred HHHHhhhhhccCC
Q 005233 504 NRLANYEKVYEPV 516 (707)
Q Consensus 504 ~Ri~~y~~~yEpl 516 (707)
+|+..|.+...|+
T Consensus 143 ~Rl~~~~~~~~~i 155 (188)
T PRK14532 143 TRLDAYNAQTAPL 155 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 7777775555443
No 82
>PRK13949 shikimate kinase; Provisional
Probab=98.95 E-value=3.3e-09 Score=104.57 Aligned_cols=139 Identities=19% Similarity=0.172 Sum_probs=80.8
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEG 433 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~~ 433 (707)
|+++|.|||||||+|+.|++.+++..+++|.+ -+...+. ....+|....++.++.++..+... +...
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~~id~D~~-----i~~~~~~-~~~~~~~~~g~~~fr~~e~~~l~~-------l~~~ 70 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLDFF-----IENRFHK-TVGDIFAERGEAVFRELERNMLHE-------VAEF 70 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeecccHH-----HHHHHCc-cHHHHHHHhCHHHHHHHHHHHHHH-------HHhC
Confidence 89999999999999999999998777666543 2222221 112345555666666555433221 2223
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHH----HHHHHHHHHHhh
Q 005233 434 GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEA----GLQDFKNRLANY 509 (707)
Q Consensus 434 G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~----a~~df~~Ri~~y 509 (707)
...||.++. ......+....+.+.+. ++||. .+.+.+.+|++.+.+.+|...+. ..+. +.+.|.+|.+.|
T Consensus 71 ~~~vis~Gg-g~~~~~~~~~~l~~~~~-vi~L~---~~~~~~~~Ri~~~~~~RP~~~~~-~~~~~~~~i~~l~~~R~~~Y 144 (169)
T PRK13949 71 EDVVISTGG-GAPCFFDNMELMNASGT-TVYLK---VSPEVLFVRLRLAKQQRPLLKGK-SDEELLDFIIEALEKRAPFY 144 (169)
T ss_pred CCEEEEcCC-cccCCHHHHHHHHhCCe-EEEEE---CCHHHHHHHHhcCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH
Confidence 445554433 22222222223344453 66776 46788999998655557877654 4343 234566666766
Q ss_pred hh
Q 005233 510 EK 511 (707)
Q Consensus 510 ~~ 511 (707)
++
T Consensus 145 ~~ 146 (169)
T PRK13949 145 RQ 146 (169)
T ss_pred Hh
Confidence 54
No 83
>PLN02950 4-alpha-glucanotransferase
Probab=98.94 E-value=2.6e-09 Score=128.87 Aligned_cols=85 Identities=25% Similarity=0.293 Sum_probs=72.2
Q ss_pred EEEEEeecccC-CCceeEEecCCCccCCCCccccccccccc---CCeeEEEEEeCCCCCceeeeEEEeeCCCCCceEeec
Q 005233 33 VSLKMVNIKLK-GDLIPHVYGSVPLVGSWDSSKALAMGRES---ASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIVEE 108 (707)
Q Consensus 33 ~~~k~~~p~l~-~~~~~~i~Gs~p~lG~W~~~kal~m~~~~---~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~~E~ 108 (707)
|.|+..+|... .++.+.|+||+|.||+|+++||++|+... .+.|++++++|. ..++||||++++.+ ++++.||.
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~-~~~ieYKYv~v~~~-g~vi~WE~ 86 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPE-GFSCEYSYYVVDDN-KNVLRWEA 86 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecC-CCeEEEEEEEEeCC-Cceeeeec
Confidence 55666677776 58899999999999999999999997664 448999999999 57799999998865 67788999
Q ss_pred CCCccccCCCC
Q 005233 109 GPNRLLTGGAL 119 (707)
Q Consensus 109 g~NR~l~~~~~ 119 (707)
|+||.+..|..
T Consensus 87 g~NR~l~lp~~ 97 (909)
T PLN02950 87 GKKRKLVLPEG 97 (909)
T ss_pred CCCeeEECCcc
Confidence 99999987754
No 84
>PRK13946 shikimate kinase; Provisional
Probab=98.94 E-value=5e-09 Score=104.29 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=82.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
.+..|+|+|+|||||||+|+.|++.|++..+++|.+ .+...+.... .++...++..++.++. .++..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~-----~~~~~g~~~~-e~~~~~ge~~~~~~e~-------~~l~~ 75 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTE-----IERAARMTIA-EIFAAYGEPEFRDLER-------RVIAR 75 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHH-----HHHHhCCCHH-HHHHHHCHHHHHHHHH-------HHHHH
Confidence 456899999999999999999999998877666643 4444443221 3344445554443321 12222
Q ss_pred HhcCCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChH-HHHHHHHHHH
Q 005233 430 MHEGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFE-AGLQDFKNRL 506 (707)
Q Consensus 430 L~~~G~vVIlDA--tn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e-~a~~df~~Ri 506 (707)
+.+.+..||.+. ++..++.|+.+.. .++ ++||+ + +.+++.+|+..+.. .|..+.. ++. ...+.+.+|.
T Consensus 76 l~~~~~~Vi~~ggg~~~~~~~r~~l~~---~~~-~v~L~--a-~~e~~~~Rl~~r~~-rp~~~~~-~~~~~i~~~~~~R~ 146 (184)
T PRK13946 76 LLKGGPLVLATGGGAFMNEETRAAIAE---KGI-SVWLK--A-DLDVLWERVSRRDT-RPLLRTA-DPKETLARLMEERY 146 (184)
T ss_pred HHhcCCeEEECCCCCcCCHHHHHHHHc---CCE-EEEEE--C-CHHHHHHHhcCCCC-CCcCCCC-ChHHHHHHHHHHHH
Confidence 333556666653 4566666666653 332 44554 4 57888888887643 5655443 333 3344455666
Q ss_pred Hhhh
Q 005233 507 ANYE 510 (707)
Q Consensus 507 ~~y~ 510 (707)
+.|.
T Consensus 147 ~~y~ 150 (184)
T PRK13946 147 PVYA 150 (184)
T ss_pred HHHH
Confidence 6554
No 85
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.92 E-value=4.4e-08 Score=109.67 Aligned_cols=130 Identities=12% Similarity=0.187 Sum_probs=92.6
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCC--------CC--------------CCC
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA--------DF--------------FRA 406 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~--------~f--------------~~~ 406 (707)
.+|.+|+++|.||+||||+|.+|+.++++. .+++.|.+|+.+.+.-... .| ...
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~----~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~ 328 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGIT----RIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEP 328 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCc----EEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCccccccccc
Confidence 369999999999999999999999997763 2556666688665432110 00 001
Q ss_pred CCH---HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 407 DNP---EGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 407 ~~e---~~~~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
..+ ++|+...+.+...+..++......|.+||+|++++.+..+. .....+..++.++|.|+|++.+++|+..|.
T Consensus 329 ~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~---~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra 405 (475)
T PRK12337 329 TRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR---HPYQAGALVVPMLVTLPDEALHRRRFELRD 405 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH---HHHhcCCceEEEEEEECCHHHHHHHHHHHh
Confidence 111 23444444454457777777777899999999999998765 223456778899999999999999999987
Q ss_pred hc
Q 005233 484 QQ 485 (707)
Q Consensus 484 ~~ 485 (707)
+.
T Consensus 406 ~~ 407 (475)
T PRK12337 406 RE 407 (475)
T ss_pred hh
Confidence 63
No 86
>PRK14527 adenylate kinase; Provisional
Probab=98.92 E-value=4.2e-09 Score=105.26 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=89.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHH-------HHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALA 422 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~ 422 (707)
++.+|+++|.|||||||+|+.|+++++...++++-+ +|+.... ... ........+ .++...+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~----~r~~~~~-~~~------~~~~~~~~~~~g~~~p~~~~~~l 73 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDI----LRDHVAR-GTE------LGQRAKPIMEAGDLVPDELILAL 73 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHH----HHHHHhc-CcH------HHHHHHHHHHcCCCCcHHHHHHH
Confidence 578999999999999999999999988777655222 1332211 100 000000000 0111111
Q ss_pred HHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEE-EEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 005233 423 MEDMISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKII-FLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 499 (707)
Q Consensus 423 l~d~~~~L~~-~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vi-fIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~ 499 (707)
+. ..+.. .+..+|+|+...+..+++.+..+ ...+..+. ++.+.|+ ++++.+|+..|... ..-.+ | -.
T Consensus 74 ~~---~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~-~~~~~~Rl~~R~~~-~~r~d--d---~~ 143 (191)
T PRK14527 74 IR---DELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVP-DEELIRRIVERARQ-EGRSD--D---NE 143 (191)
T ss_pred HH---HHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCccc-CCCCC--C---CH
Confidence 11 12222 24569999977778888888776 45555543 3555665 67788888776432 11111 2 23
Q ss_pred HHHHHHHHhhhhhccCCC----CCCeeEEeec
Q 005233 500 QDFKNRLANYEKVYEPVD----EGSYIKMIDM 527 (707)
Q Consensus 500 ~df~~Ri~~y~~~yEpl~----e~~yik~in~ 527 (707)
+-+.+|++.|.+..+|+- +..-+..||.
T Consensus 144 ~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~ 175 (191)
T PRK14527 144 ETVRRRQQVYREQTQPLVDYYEARGHLKRVDG 175 (191)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhcCCEEEEEC
Confidence 456788888887777753 2233455554
No 87
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.90 E-value=3.2e-09 Score=104.62 Aligned_cols=152 Identities=17% Similarity=0.255 Sum_probs=86.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 424 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~l~ 424 (707)
+|+++|.|||||||+|+.|+++++... ++.++. |+.... ... ........+ .+++..++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~-----is~~d~lr~~~~~-~~~------~~~~~~~~~~~g~~~~~~~~~~ll~ 68 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTH-----LSAGDLLRAEIKS-GSE------NGELIESMIKNGKIVPSEVTVKLLK 68 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeE-----EECChHHHHHHhc-CCh------HHHHHHHHHHCCCcCCHHHHHHHHH
Confidence 589999999999999999999976544 444333 543321 000 000000000 011112222
Q ss_pred HHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHc--CCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 005233 425 DMISWMHE-GGQVGIFDATNSSRKRRNMLMKMAE--GNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (707)
Q Consensus 425 d~~~~L~~-~G~vVIlDAtn~~~e~R~~l~~l~~--~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~d 501 (707)
..+.. .+..+|+|+...+.+++..+.++.. .... ++|.+.|+ ++++.+|+..|... . + ..+...+.
T Consensus 69 ---~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d-~~i~l~~~-~~~~~~Rl~~R~~~-~---~--r~dd~~e~ 137 (183)
T TIGR01359 69 ---NAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFK-FVLFFDCP-EEVMIKRLLKRGQS-S---G--RVDDNIES 137 (183)
T ss_pred ---HHHhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCC-EEEEEECC-HHHHHHHHhcCCcc-C---C--CCCCCHHH
Confidence 12222 2678999999999988888887732 2222 35555665 57777777766431 1 1 11223455
Q ss_pred HHHHHHhhhhhccCCCC----CCeeEEeec
Q 005233 502 FKNRLANYEKVYEPVDE----GSYIKMIDM 527 (707)
Q Consensus 502 f~~Ri~~y~~~yEpl~e----~~yik~in~ 527 (707)
+.+|+..|.+...|+-+ ..++..||.
T Consensus 138 ~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~ 167 (183)
T TIGR01359 138 IKKRFRTYNEQTLPVIEHYENKGKVKEINA 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 67888888777666432 245566775
No 88
>PRK14531 adenylate kinase; Provisional
Probab=98.88 E-value=2.3e-09 Score=106.62 Aligned_cols=140 Identities=17% Similarity=0.157 Sum_probs=82.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCce-EEEechhhHHHhhCCCCCCCCCCCCCHHHHHHH-------HHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAM 423 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~t-dv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~l 423 (707)
.-|+++|.|||||||+|+.|+++++...+++ +++ |+....... ........+ .++...++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~l-----r~~~~~~~~-------~~~~~~~~~~~G~~v~d~l~~~~~ 70 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLL-----RSEVAAGSA-------LGQEAEAVMNRGELVSDALVLAIV 70 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHH-----HHHHhcCCH-------HHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3589999999999999999999987665554 333 553321110 000000000 01111111
Q ss_pred HHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 005233 424 EDMISWMHE-GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (707)
Q Consensus 424 ~d~~~~L~~-~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~ 500 (707)
. ..|.. .+..+|+|+...+..+++.+.++ .+.+..+ .+|.+.| +++++.+|+..|.+ + + |.+ +
T Consensus 71 ~---~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~-~~~~l~~Rl~~R~r--~---d--D~~---e 136 (183)
T PRK14531 71 E---SQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLEL-DDAVLIERLLARGR--A---D--DNE---A 136 (183)
T ss_pred H---HHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEEC-CHHHHHHHhhcCCC--C---C--CCH---H
Confidence 1 12222 34557889999999988888776 4444333 2455566 47888888887743 1 1 222 3
Q ss_pred HHHHHHHhhhhhccCCC
Q 005233 501 DFKNRLANYEKVYEPVD 517 (707)
Q Consensus 501 df~~Ri~~y~~~yEpl~ 517 (707)
.+.+|+..|++..+|+-
T Consensus 137 ~i~~Rl~~y~~~~~pv~ 153 (183)
T PRK14531 137 VIRNRLEVYREKTAPLI 153 (183)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678888887777753
No 89
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.86 E-value=2.7e-08 Score=100.23 Aligned_cols=131 Identities=18% Similarity=0.296 Sum_probs=79.3
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
...|.+|+|.|-|||||||++..+...+. +-+..+++.|++|+...... .+...............+....+.++
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYD---ELLKADPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHH---HHHHHHCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchh---hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999988765 56778899999987331000 00000111223334444555556666
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHH-HHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 428 SWMHEGGQVGIFDATNSSRKRRN-MLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e~R~-~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
..+.+.+..+|+|.|+...+.-. .+..+++.|+++..+-+.| ++++-..|+..|..
T Consensus 87 ~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~-~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAV-PPELSIERVRQRYE 143 (199)
T ss_dssp HHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE----HHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEEC-CHHHHHHHHHHHHH
Confidence 67777899999999999877644 5556688899887776666 46777777777643
No 90
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.86 E-value=1.9e-08 Score=99.38 Aligned_cols=139 Identities=20% Similarity=0.247 Sum_probs=83.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
+..|+++|+||+||||+|+.|++.+++..+++| ..++...+.. ...++....+..|+.++. .++++ +
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D-----~~i~~~~g~~-i~~~~~~~g~~~fr~~e~---~~l~~----l 70 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD-----QEIEKRTGAD-IGWVFDVEGEEGFRDREE---KVINE----L 70 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC-----chHHHHhCcC-HhHHHHHhCHHHHHHHHH---HHHHH----H
Confidence 457999999999999999999999776554444 4455555432 223455556666666542 22222 2
Q ss_pred hcCCeEEEEeCCCC---CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChH-HHHHHHHHHH
Q 005233 431 HEGGQVGIFDATNS---SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFE-AGLQDFKNRL 506 (707)
Q Consensus 431 ~~~G~vVIlDAtn~---~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e-~a~~df~~Ri 506 (707)
...+..|| ..... .++.|..+ .+.+ .++||+ .+.+.+.+|+..+. .+|...+. .++ .+...+.+|.
T Consensus 71 ~~~~~~vi-~~ggg~v~~~~~~~~l---~~~~-~vv~L~---~~~e~~~~Ri~~~~-~rP~~~~~-~~~~~~~~l~~~R~ 140 (172)
T PRK05057 71 TEKQGIVL-ATGGGSVKSRETRNRL---SARG-VVVYLE---TTIEKQLARTQRDK-KRPLLQVD-DPREVLEALANERN 140 (172)
T ss_pred HhCCCEEE-EcCCchhCCHHHHHHH---HhCC-EEEEEe---CCHHHHHHHHhCCC-CCCCCCCC-CHHHHHHHHHHHHH
Confidence 22344444 33222 33444333 3444 477776 46788888887654 47888755 443 3445666787
Q ss_pred Hhhhhh
Q 005233 507 ANYEKV 512 (707)
Q Consensus 507 ~~y~~~ 512 (707)
+.|++.
T Consensus 141 ~~Y~~~ 146 (172)
T PRK05057 141 PLYEEI 146 (172)
T ss_pred HHHHhh
Confidence 777553
No 91
>PRK13947 shikimate kinase; Provisional
Probab=98.86 E-value=1.4e-08 Score=99.10 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=77.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
-|+++|+|||||||+|+.|++.|++..+++|.+ .+...|... ..++...++..++..+..+.. .+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~-----~~~~~g~~~-~~~~~~~ge~~~~~~e~~~~~-------~l~~ 69 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE-----IEKMTGMTV-AEIFEKDGEVRFRSEEKLLVK-------KLAR 69 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchh-----hhhhcCCcH-HHHHHHhChHHHHHHHHHHHH-------HHhh
Confidence 389999999999999999999998876665544 554443322 234455555555554442222 1222
Q ss_pred CCeEEEEeCC--CCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhh
Q 005233 433 GGQVGIFDAT--NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (707)
Q Consensus 433 ~G~vVIlDAt--n~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~ 510 (707)
.+..||-... -...+.+ ..+.+.+. ++||. | +++.+.+|+..+. .+|........+...+.|.+|.+.|+
T Consensus 70 ~~~~vi~~g~g~vl~~~~~---~~l~~~~~-vv~L~--~-~~~~l~~Rl~~r~-~rp~~~~~~~~~~i~~~~~~r~~~y~ 141 (171)
T PRK13947 70 LKNLVIATGGGVVLNPENV---VQLRKNGV-VICLK--A-RPEVILRRVGKKK-SRPLLMVGDPEERIKELLKEREPFYD 141 (171)
T ss_pred cCCeEEECCCCCcCCHHHH---HHHHhCCE-EEEEE--C-CHHHHHHHhcCCC-CCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 3444542221 1223333 33344443 55554 4 6788889998663 35655333123444455666666654
No 92
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.84 E-value=4.3e-08 Score=97.32 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=86.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech-hhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d-dyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
.+++++|.+||||||+++.|+..+....++.+.+... ..|+...+.. +.+.........+..++... +
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~----~~~~~~~~~~~~~~~~~~~~-------~ 72 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIP----LTDEDRLPWLERLNDASYSL-------Y 72 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCC----CCcccchHHHHHHHHHHHHH-------H
Confidence 4789999999999999999999877644433333211 1344332221 22222211222222333221 1
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhh
Q 005233 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (707)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~ 510 (707)
..+...+|+ +++..+..|+.+++ .+.++.||+|.|+ .+++++|+.+|.. ++ . +++.+ ..|.
T Consensus 73 ~~~~~g~iv-~s~~~~~~R~~~r~---~~~~~~~v~l~a~-~~~l~~Rl~~R~~---~~--~-~~~vl--------~~Q~ 133 (176)
T PRK09825 73 KKNETGFIV-CSSLKKQYRDILRK---SSPNVHFLWLDGD-YETILARMQRRAG---HF--M-PPDLL--------QSQF 133 (176)
T ss_pred hcCCCEEEE-EEecCHHHHHHHHh---hCCCEEEEEEeCC-HHHHHHHHhcccC---CC--C-CHHHH--------HHHH
Confidence 222333454 88998888887744 4556788888885 7889999988853 22 3 56666 6677
Q ss_pred hhccCCCCC-CeeEEeec
Q 005233 511 KVYEPVDEG-SYIKMIDM 527 (707)
Q Consensus 511 ~~yEpl~e~-~yik~in~ 527 (707)
+.|||.+.. .=+..+|+
T Consensus 134 ~~~e~~~~~e~~~~~~d~ 151 (176)
T PRK09825 134 DALERPCADEHDIARIDV 151 (176)
T ss_pred HHcCCCCCCcCCeEEEEC
Confidence 778877543 22444555
No 93
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.84 E-value=1.2e-08 Score=117.67 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=98.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAAL-AMEDMIS 428 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~-~l~d~~~ 428 (707)
+...|+|+|+|||||||+++.|++.|++..+++|. +-....|. ...++|....++.|+.++..+.. ++.
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~-----~ie~~~g~-si~eif~~~Ge~~FR~~E~~~l~~~~~---- 74 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV-----EIEREIGM-SIPSYFEEYGEPAFREVEADVVADMLE---- 74 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH-----HHHHHHCc-CHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 45679999999999999999999999988766654 34434432 23467888888888887755443 222
Q ss_pred HHhcCCeEEEEe-C-CCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 005233 429 WMHEGGQVGIFD-A-TNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (707)
Q Consensus 429 ~L~~~G~vVIlD-A-tn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~R 505 (707)
....||-- + +-..++.|+.+.+. ++.+ .++||. .+.+.+.+|+... ..+|.+.+. ..+.+.+.|.+|
T Consensus 75 ----~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g-~vv~L~---~~~~~l~~Rl~~~-~~RPll~~~-~~~~~~~l~~~R 144 (542)
T PRK14021 75 ----DFDGIFSLGGGAPMTPSTQHALASYIAHGG-RVVYLD---ADPKEAMERANRG-GGRPMLNGD-ANKRWKKLFKQR 144 (542)
T ss_pred ----cCCeEEECCCchhCCHHHHHHHHHHHhcCC-EEEEEE---CCHHHHHHHHhCC-CCCCCCCCC-cHHHHHHHHHHH
Confidence 22334421 1 13355667777765 4544 577776 4678888888755 347887654 466777888899
Q ss_pred HHhhhhhc
Q 005233 506 LANYEKVY 513 (707)
Q Consensus 506 i~~y~~~y 513 (707)
.+.|++..
T Consensus 145 ~~~Y~~~A 152 (542)
T PRK14021 145 DPVFRQVA 152 (542)
T ss_pred HHHHHhhC
Confidence 99998743
No 94
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.84 E-value=1.8e-08 Score=102.06 Aligned_cols=138 Identities=18% Similarity=0.208 Sum_probs=83.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCc-eEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~-tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~ 431 (707)
|||+||+|.|||||.|+.|.+.|...+.+ +..+..| .-.|......|.+..+++..+ .++-..+-+ =.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d----eslg~~~ns~y~~s~~EK~lR--g~L~S~v~R-----~L 71 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD----ESLGIEKNSNYGDSQAEKALR--GKLRSAVDR-----SL 71 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech----hhcCCCCcccccccHHHHHHH--HHHHHHHHh-----hc
Confidence 79999999999999999999999988755 4333222 225555556666555554432 222211111 12
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 005233 432 EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (707)
Q Consensus 432 ~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (707)
..+.+||+|+-|..+..|..+..+ +......-.|.+-|+.+.+.++| .. +..|+-.++ +.+ .++++..|+
T Consensus 72 sk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~N-s~--~~~p~e~gy-~~e-~le~L~~Ry 142 (281)
T KOG3062|consen 72 SKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWN-SE--REDPGEDGY-DDE-LLEALVQRY 142 (281)
T ss_pred ccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhc-cc--CCCCCCCCC-CHH-HHHHHHHHh
Confidence 258999999999999999999888 33343333344444433344444 22 334555444 343 334444443
No 95
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=98.81 E-value=1.1e-08 Score=108.92 Aligned_cols=110 Identities=27% Similarity=0.341 Sum_probs=96.1
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
+-+..-||++||+|+||||++-+|.++|...|+.++-+++|++| +|.+...+|..+++++..+++.++|+..
T Consensus 47 gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnir---hgl~knlgfs~edreenirriaevaklf----- 118 (627)
T KOG4238|consen 47 GFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIR---HGLNKNLGFSPEDREENIRRIAEVAKLF----- 118 (627)
T ss_pred CccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhh---hhhhhccCCCchhHHHHHHHHHHHHHHH-----
Confidence 56788999999999999999999999999999999999998875 5788899999999999999999999984
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeC
Q 005233 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICN 470 (707)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~ 470 (707)
.++|.+.|.....+..+.|..++++ ...+.+ |+|+.++
T Consensus 119 ---adaglvcitsfispf~~dr~~arkihe~~~l~--f~ev~v~ 157 (627)
T KOG4238|consen 119 ---ADAGLVCITSFISPFAKDRENARKIHESAGLP--FFEVFVD 157 (627)
T ss_pred ---hcCCceeeehhcChhhhhhhhhhhhhcccCCc--eEEEEec
Confidence 4489999999999999999999999 444544 6666544
No 96
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.76 E-value=2.9e-08 Score=96.26 Aligned_cols=141 Identities=17% Similarity=0.257 Sum_probs=72.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
.+.+|+|+|+|||||||+|+.|++.|++.. ++.|++.+...+.... .++.+.++..++..+ ..++.++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~-----~d~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~---~~~~~~l~-- 71 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDF-----IDTDHLIEARAGKSIP-EIFEEEGEAAFRELE---EEVLAELL-- 71 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCE-----EEChHHHHHHcCCCHH-HHHHHHCHHHHHHHH---HHHHHHHH--
Confidence 467999999999999999999999986544 4555556544443221 222223333333222 11122111
Q ss_pred HhcCCeEEEEeCC-CC-CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCCh-HHHHHHHHHHH
Q 005233 430 MHEGGQVGIFDAT-NS-SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRL 506 (707)
Q Consensus 430 L~~~G~vVIlDAt-n~-~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~-e~a~~df~~Ri 506 (707)
...+ .||..+. .. ....|..+ .. +..++|| .| +.+.+.+|+..+.. .+-.... +. +...+.|.+|.
T Consensus 72 -~~~~-~vi~~g~~~~~~~~~r~~l---~~-~~~~v~l--~~-~~~~~~~R~~~~~~-r~~~~~~-~~~~~~~~~~~~~~ 140 (175)
T PRK00131 72 -ARHN-LVISTGGGAVLREENRALL---RE-RGTVVYL--DA-SFEELLRRLRRDRN-RPLLQTN-DPKEKLRDLYEERD 140 (175)
T ss_pred -hcCC-CEEEeCCCEeecHHHHHHH---Hh-CCEEEEE--EC-CHHHHHHHhcCCCC-CCcCCCC-ChHHHHHHHHHHHH
Confidence 1223 3443332 22 22334333 23 3445555 44 56778888876543 3433322 22 23334445555
Q ss_pred Hhhhhh
Q 005233 507 ANYEKV 512 (707)
Q Consensus 507 ~~y~~~ 512 (707)
..|...
T Consensus 141 ~~~~~~ 146 (175)
T PRK00131 141 PLYEEV 146 (175)
T ss_pred HHHHhh
Confidence 555543
No 97
>PLN02199 shikimate kinase
Probab=98.73 E-value=4.9e-08 Score=103.87 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=86.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh-hCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK-HGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~-~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
...|+|+|+|||||||+++.|++.|++..+++|.+ -+.. .| .....+|...++..|+.++..+..-+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~l-----Ie~~~~G-~sI~eIf~~~GE~~FR~~E~e~L~~L~----- 170 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTL-----IEQAMNG-TSVAEIFVHHGENFFRGKETDALKKLS----- 170 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHH-----HHHHhcC-CCHHHHHHHhCHHHHHHHHHHHHHHHH-----
Confidence 34799999999999999999999988877666543 3332 22 223457777888888877654443222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh-hhcCCCCCCCCCh-------HHHHHH
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK-IQQSPDYAEEPDF-------EAGLQD 501 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r-~~~~pd~s~~~d~-------e~a~~d 501 (707)
.....|| ........+.+.+..+. .| .++||. .+.+.+.+||... ...+|...+. +. +.+.+.
T Consensus 171 --~~~~~VI-StGGG~V~~~~n~~~L~-~G-~vV~Ld---as~E~l~~RL~~~~~~~RPLL~~~-~~d~~~~~~~~L~~L 241 (303)
T PLN02199 171 --SRYQVVV-STGGGAVIRPINWKYMH-KG-ISIWLD---VPLEALAHRIAAVGTDSRPLLHDE-SGDAYSVAFKRLSAI 241 (303)
T ss_pred --hcCCEEE-ECCCcccCCHHHHHHHh-CC-eEEEEE---CCHHHHHHHHhhcCCCCCCcCCCC-CcchhhhHHHHHHHH
Confidence 1233344 33222222222222223 35 467776 4678899999852 2347777543 33 455677
Q ss_pred HHHHHHhhhh
Q 005233 502 FKNRLANYEK 511 (707)
Q Consensus 502 f~~Ri~~y~~ 511 (707)
|.+|.+.|++
T Consensus 242 ~~~R~plY~~ 251 (303)
T PLN02199 242 WDERGEAYTN 251 (303)
T ss_pred HHHHHHHHHh
Confidence 7788888875
No 98
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=98.72 E-value=2.9e-08 Score=99.35 Aligned_cols=75 Identities=24% Similarity=0.249 Sum_probs=59.9
Q ss_pred CCceEEEeccccccccCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc-----CCCcc
Q 005233 558 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA-----GFPKI 632 (707)
Q Consensus 558 ~~~~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~-----g~~v~ 632 (707)
+.+.|+||||||-..... -..||+.|++||+.+|..|++. +.+++.|+.|+|.||.+||.+|+ ++...
T Consensus 93 atRhI~LiRHgeY~~~g~-----~~hLTelGReQAE~tGkRL~el--glk~d~vv~StM~RA~ETadIIlk~l~d~lk~~ 165 (284)
T KOG4609|consen 93 ATRHIFLIRHGEYHVDGS-----LEHLTELGREQAELTGKRLAEL--GLKFDKVVASTMVRATETADIILKHLPDDLKRV 165 (284)
T ss_pred hhceEEEEeccceeccCc-----hhhcchhhHHHHHHHhHHHHHc--CCchhhhhhhhhhhhHHHHHHHHHhCCCcccee
Confidence 358899999999743211 2379999999999999999887 88999999999999999999992 23344
Q ss_pred ccccccc
Q 005233 633 QWRALDE 639 (707)
Q Consensus 633 ~~~~L~E 639 (707)
..+.|+|
T Consensus 166 s~~ll~E 172 (284)
T KOG4609|consen 166 SCPLLRE 172 (284)
T ss_pred ccccccc
Confidence 4556665
No 99
>PLN02200 adenylate kinase family protein
Probab=98.71 E-value=5.6e-08 Score=100.81 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=85.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHH-------HHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAA 420 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~ 420 (707)
..|++|+++|.|||||||+|+.|+++++.. .++.|+. |+...... . ........+ .++..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~-----his~gdllR~~i~~~s-~------~~~~i~~~~~~G~~vp~e~~~ 108 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK-----HLSAGDLLRREIASNS-E------HGAMILNTIKEGKIVPSEVTV 108 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe-----EEEccHHHHHHHhccC-h------hHHHHHHHHHcCCCCcHHHHH
Confidence 357899999999999999999999987643 4555555 44322111 0 000000000 01111
Q ss_pred HHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 005233 421 LAMEDMISWMH-EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGL 499 (707)
Q Consensus 421 ~~l~d~~~~L~-~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~ 499 (707)
..+. ..+. ..+..+|+|+...+.+++..+..+..... -++|.+.|+ ++++.+|+..|...+.| +..
T Consensus 109 ~~l~---~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~p-d~vi~Ld~~-~e~~~~Rl~~R~~~r~d--------d~~ 175 (234)
T PLN02200 109 KLIQ---KEMESSDNNKFLIDGFPRTEENRIAFERIIGAEP-NVVLFFDCP-EEEMVKRVLNRNQGRVD--------DNI 175 (234)
T ss_pred HHHH---HHHhcCCCCeEEecCCcccHHHHHHHHHHhccCC-CEEEEEECC-HHHHHHHHHcCcCCCCC--------CCH
Confidence 1111 1121 12456899998888888877776633222 234455665 56677777766432222 223
Q ss_pred HHHHHHHHhhhhhccCCCC----CCeeEEeec
Q 005233 500 QDFKNRLANYEKVYEPVDE----GSYIKMIDM 527 (707)
Q Consensus 500 ~df~~Ri~~y~~~yEpl~e----~~yik~in~ 527 (707)
+.+.+|++.|.+..+|+-+ ..-+..||.
T Consensus 176 e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa 207 (234)
T PLN02200 176 DTIKKRLKVFNALNLPVIDYYSKKGKLYTINA 207 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 5567888888887776432 133445564
No 100
>PRK01184 hypothetical protein; Provisional
Probab=98.68 E-value=3.3e-07 Score=90.72 Aligned_cols=121 Identities=14% Similarity=0.158 Sum_probs=64.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh-hHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDM-ISW 429 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd-yRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~-~~~ 429 (707)
++|+|+|+|||||||+|+ +++.++. .+++.|| +|+.....+. ........+.....+..+....+.++ ...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~-----~~i~~~d~lr~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGI-----PVVVMGDVIREEVKKRGL-EPTDENIGKVAIDLRKELGMDAVAKRTVPK 74 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCC-----cEEEhhHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 489999999999999997 5555443 3355444 4665432111 11111112222222222221222111 222
Q ss_pred Hh-cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 430 MH-EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 430 L~-~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
+. ..+..||+|+. .....++.+++.... .+..|.+.|+ .+...+|+..|.
T Consensus 75 i~~~~~~~vvidg~-r~~~e~~~~~~~~~~--~~~~i~v~~~-~~~~~~Rl~~R~ 125 (184)
T PRK01184 75 IREKGDEVVVIDGV-RGDAEVEYFRKEFPE--DFILIAIHAP-PEVRFERLKKRG 125 (184)
T ss_pred HHhcCCCcEEEeCC-CCHHHHHHHHHhCCc--ccEEEEEECC-HHHHHHHHHHcC
Confidence 33 34789999998 466666666665332 2345555665 666777776653
No 101
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.67 E-value=1.1e-07 Score=92.96 Aligned_cols=137 Identities=18% Similarity=0.257 Sum_probs=75.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
.|+++|+|||||||+|+.|++.|++..+++ |.+.....+..... ++.....+.++.++.-+... +.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~-----D~~~~~~~g~~~~~-~~~~~g~~~~~~~e~~~~~~-------~~- 69 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT-----DQWLQSTSNMTVAE-IVEREGWAGFRARESAALEA-------VT- 69 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc-----cHHHHHHhCCCHHH-HHHHHCHHHHHHHHHHHHHH-------hc-
Confidence 478899999999999999999988765444 44455444332222 33334455555444322221 22
Q ss_pred CCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh--cCCCCCCCCCh-HHHHHHHHHHHH
Q 005233 433 GGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ--QSPDYAEEPDF-EAGLQDFKNRLA 507 (707)
Q Consensus 433 ~G~vVIlDAtn--~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~--~~pd~s~~~d~-e~a~~df~~Ri~ 507 (707)
.+..||..+.+ .....|+.+ .+.++ ++|++ .+++++.+|+..+.. .+|...+. +. +...+.|.+|.+
T Consensus 70 ~~~~vi~~ggg~vl~~~~~~~l---~~~~~-~v~l~---~~~~~~~~Rl~~r~~~~~rp~~~~~-~~~~~~~~~~~~r~~ 141 (171)
T PRK03731 70 APSTVIATGGGIILTEENRHFM---RNNGI-VIYLC---APVSVLANRLEANPEEDQRPTLTGK-PISEEVAEVLAEREA 141 (171)
T ss_pred CCCeEEECCCCccCCHHHHHHH---HhCCE-EEEEE---CCHHHHHHHHccccccccCCcCCCC-ChHHHHHHHHHHHHH
Confidence 33444432222 133334333 33443 55665 367888888876532 24555443 33 334455566767
Q ss_pred hhhh
Q 005233 508 NYEK 511 (707)
Q Consensus 508 ~y~~ 511 (707)
.|++
T Consensus 142 ~y~~ 145 (171)
T PRK03731 142 LYRE 145 (171)
T ss_pred HHHH
Confidence 7764
No 102
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=2.5e-07 Score=88.64 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=93.9
Q ss_pred ccCCCChHHHHHHHHHHHhhcCCceEEEec-hhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeE
Q 005233 358 GLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQV 436 (707)
Q Consensus 358 GLPGSGKSTlAr~Lar~L~~~gi~tdv~~~-ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~~G~v 436 (707)
|.+||||||+|++|++.|++..++-|-|+. .+++|+-.|. ...++++.--.+.+.+.+... .+.|..
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~Gi----PL~DdDR~pWL~~l~~~~~~~--------~~~~~~ 69 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGI----PLNDDDRWPWLEALGDAAASL--------AQKNKH 69 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCC----CCCcchhhHHHHHHHHHHHHh--------hcCCCc
Confidence 889999999999999999999988888776 3444433332 233334443344443333332 225667
Q ss_pred EEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhhhhccCC
Q 005233 437 GIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYEKVYEPV 516 (707)
Q Consensus 437 VIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~~~yEpl 516 (707)
+|+-+..+++..|+.+++-.. ++.++|++ -+.+++.+|+..|+.. | -+..+ +..|-+..|++
T Consensus 70 ~vi~CSALKr~YRD~LR~~~~-~~~Fv~L~---g~~~~i~~Rm~~R~gH---F----M~~~l-------l~SQfa~LE~P 131 (161)
T COG3265 70 VVIACSALKRSYRDLLREANP-GLRFVYLD---GDFDLILERMKARKGH---F----MPASL-------LDSQFATLEEP 131 (161)
T ss_pred eEEecHHHHHHHHHHHhccCC-CeEEEEec---CCHHHHHHHHHhcccC---C----CCHHH-------HHHHHHHhcCC
Confidence 888899999999999998643 36666666 5789999999888652 2 22222 34555555666
Q ss_pred CCCCeeEEeec
Q 005233 517 DEGSYIKMIDM 527 (707)
Q Consensus 517 ~e~~yik~in~ 527 (707)
+.+..+..||+
T Consensus 132 ~~de~vi~idi 142 (161)
T COG3265 132 GADEDVLTIDI 142 (161)
T ss_pred CCCCCEEEeeC
Confidence 55568888887
No 103
>PRK12338 hypothetical protein; Provisional
Probab=98.65 E-value=3.3e-07 Score=98.80 Aligned_cols=127 Identities=15% Similarity=0.163 Sum_probs=84.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCC--------------------CC-
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRA--------------------DN- 408 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~--------------------~~- 408 (707)
+|.+|+++|.||+||||+|++|++++++.. +...|-+|+.+.+..+.. +.+. ..
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~----~~~tD~~r~~~~~~~~~~-~~P~l~~ssy~a~~~l~~~~~~~~~~~ 77 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKH----LIETDFIREVVRGIIGKE-YAPALHKSSYNAYTALRDKENFKNNEE 77 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeE----EccChHHHHHHcCCCCcc-cCchhhcccHHHHhhcCCcccccchHH
Confidence 578999999999999999999999987542 334455588766643221 1000 00
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 409 --PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 409 --e~~~~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
-++|+...+++...++.++.-....|..+|++++...+......... ....+.|+-.+ +|++..++|...|..
T Consensus 78 ~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~--~~~~v~~~vl~-~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 78 LICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFE--ENASIHFFILS-ADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhc--ccCceEEEEEE-CCHHHHHHHHHHhhh
Confidence 12344445566666666666655689999999999998765542221 22345555555 789999999988764
No 104
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.61 E-value=3.5e-07 Score=90.80 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=69.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhC-CC-CCCCC-CCCC---CHHHHHHHHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG-VN-QSADF-FRAD---NPEGMEARNEVAALAMED 425 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g-~~-~~~~f-~~~~---~e~~~~~~~~vA~~~l~d 425 (707)
.+|+|.|-|.|||||||+.|+..+.. .--.+..|.+++.+.. .. ...++ +..+ ....+..+......
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~---p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---- 74 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPE---PWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHA---- 74 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS----EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHH----
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcC---CeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHH----
Confidence 48999999999999999999998752 2245677777774321 11 11222 1111 11222222221111
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHH-HHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005233 426 MISWMHEGGQVGIFDATNSSRKR-RNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (707)
Q Consensus 426 ~~~~L~~~G~vVIlDAtn~~~e~-R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r 482 (707)
.++-+.+.|..||+|........ .+.++++.. +++++||.+.|+ .+++++|=+.|
T Consensus 75 ~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~-~~~vl~VgV~Cp-leil~~RE~~R 130 (174)
T PF07931_consen 75 AIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLA-GLPVLFVGVRCP-LEILERRERAR 130 (174)
T ss_dssp HHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHT-TS-EEEEEEE---HHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEecCccCcHHHHHHHHHHhC-CCceEEEEEECC-HHHHHHHHHhc
Confidence 22224458999999999888775 677766543 688999999997 45667665554
No 105
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.61 E-value=1.5e-07 Score=95.86 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=83.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHH-------HHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-------EVAALAMED 425 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~~l~d 425 (707)
-|+++|.|||||||+|+.|++++++..+++.-+ .|+....... ...+....+. ++...++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl----~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~~i-- 68 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDM----LRAAVKAGTE-------LGKEAKSYMDAGELVPDEIVIGLV-- 68 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCcc----HHHHHhccch-------HHHHHHHHHHcCCcCCHHHHHHHH--
Confidence 488999999999999999999988766554221 2443221100 0000000000 1111111
Q ss_pred HHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcCCC-------------
Q 005233 426 MISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPD------------- 488 (707)
Q Consensus 426 ~~~~L~~--~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r~~~~pd------------- 488 (707)
...+.+ .+..+|+|+...+.++.+.+.++ ...+..+ .+|.+.|+ ++++.+|+..|.. .|.
T Consensus 69 -~~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~-~~~~g~~~~~~~~~p~ 145 (215)
T PRK00279 69 -KERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVP-DEELVERLSGRRI-CPACGRTYHVKFNPPK 145 (215)
T ss_pred -HHHHhccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHhCCcc-cCccCCcccccCCCCC
Confidence 112222 23468999977777777777665 4445433 56667776 5677778877642 110
Q ss_pred -----------CCCCCChHHHHHHHHHHHHhhhhhccCCC
Q 005233 489 -----------YAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 489 -----------~s~~~d~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
... ..++..+.+.+|+..|++..+|+-
T Consensus 146 ~~~~~~~~~~~l~~--r~dd~~~~i~~Rl~~y~~~~~~i~ 183 (215)
T PRK00279 146 VEGKCDVCGEELIQ--RADDNEETVRKRLEVYHKQTAPLI 183 (215)
T ss_pred CcCcCcCCCCcccC--CCCCCHHHHHHHHHHHHHhhHHHH
Confidence 111 123345667889999988877765
No 106
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.60 E-value=2.7e-07 Score=90.88 Aligned_cols=140 Identities=16% Similarity=0.219 Sum_probs=71.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCC----------CCCCCCCCHHHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----------ADFFRADNPEGMEARNEVAA 420 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~----------~~f~~~~~e~~~~~~~~vA~ 420 (707)
.+|+++|.|||||||+|+.|+++++.. .++.|++ |+...+.... ..+. .....+..+.+.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 76 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFT-----HLSTGDLLRAEVASGSERGKQLQAIMESGDLV--PLDTVLDLLKDAMV 76 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHH
Confidence 488999999999999999999987544 3555554 3322111000 0000 01111111111111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 005233 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (707)
Q Consensus 421 ~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~ 500 (707)
. ....|..+|+|+...+..+...+.. ......++|.+.|+ ++++.+|+..|... .+-.+ .-..
T Consensus 77 ~--------~~~~~~~~i~dg~~~~~~q~~~~~~--~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~-~~r~d-----~~~~ 139 (188)
T TIGR01360 77 A--------ALGTSKGFLIDGYPREVKQGEEFER--RIGPPTLVLYFDCS-EDTMVKRLLKRAET-SGRVD-----DNEK 139 (188)
T ss_pred c--------ccCcCCeEEEeCCCCCHHHHHHHHH--cCCCCCEEEEEECC-HHHHHHHHHccccc-CCCCC-----CCHH
Confidence 1 1225788999998766544443332 22223345555564 67778888766431 12111 2224
Q ss_pred HHHHHHHhhhhhccC
Q 005233 501 DFKNRLANYEKVYEP 515 (707)
Q Consensus 501 df~~Ri~~y~~~yEp 515 (707)
.+.+|+..|.+.-.|
T Consensus 140 ~~~~r~~~~~~~~~~ 154 (188)
T TIGR01360 140 TIKKRLETYYKATEP 154 (188)
T ss_pred HHHHHHHHHHHhhHH
Confidence 456677666544333
No 107
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=6.9e-07 Score=86.15 Aligned_cols=122 Identities=15% Similarity=0.202 Sum_probs=83.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech-hhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG-KYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d-dyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
-|.+|++.|.+||||||++++|.+.|++..++-|-|+.- +.+|+..|.. .-++++---.......++..+.
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~Gip----LnD~DR~pWL~~i~~~~~~~l~---- 82 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIP----LNDDDRWPWLKKIAVELRKALA---- 82 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCC----CCcccccHHHHHHHHHHHHHhh----
Confidence 467999999999999999999999999998888877663 3444443321 2223333223333333333333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-H-----c-CCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-A-----E-GNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~~l-~-----~-~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
.|+.||+.+....+..|+.++.- . . ...++.||-... ..+++..|+..|+.
T Consensus 83 ----~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~g 140 (191)
T KOG3354|consen 83 ----SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKG 140 (191)
T ss_pred ----cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhccc
Confidence 79999999999999999999984 2 1 123445554444 57888888887754
No 108
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.59 E-value=1.4e-07 Score=101.76 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=82.3
Q ss_pred CCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005233 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (707)
Q Consensus 346 ~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d 425 (707)
++...+..|+++|+|||||||+|+.|++.|++..+ +.|.++....|... ..++....+..|+..+.-+ +.
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i-----d~D~~i~~~~G~~i-~ei~~~~G~~~fr~~e~~~---l~- 197 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFV-----ELNREIEREAGLSV-SEIFALYGQEGYRRLERRA---LE- 197 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE-----eHHHHHHHHhCCCH-HHHHHHHCHHHHHHHHHHH---HH-
Confidence 44566779999999999999999999999876554 44555555544322 1233334455554433221 11
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 005233 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (707)
Q Consensus 426 ~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~R 505 (707)
+.+.+.+.+||..+.+. ...-..+..+.. ++-++|| .| +.+.+.+|+..+...+|...+....+.+.+.+.+|
T Consensus 198 --~ll~~~~~~VI~~Ggg~-v~~~~~~~~l~~-~~~~V~L--~a-~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R 270 (309)
T PRK08154 198 --RLIAEHEEMVLATGGGI-VSEPATFDLLLS-HCYTVWL--KA-SPEEHMARVRAQGDLRPMADNREAMEDLRRILASR 270 (309)
T ss_pred --HHHhhCCCEEEECCCch-hCCHHHHHHHHh-CCEEEEE--EC-CHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH
Confidence 11223445555544432 211111222333 2334554 34 57888888877654445332221356666667777
Q ss_pred HHhhh
Q 005233 506 LANYE 510 (707)
Q Consensus 506 i~~y~ 510 (707)
.+.|+
T Consensus 271 ~~~y~ 275 (309)
T PRK08154 271 EPLYA 275 (309)
T ss_pred HHHHH
Confidence 77775
No 109
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.58 E-value=5.7e-07 Score=89.11 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=82.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHHH-------HHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAALAMED 425 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~~l~d 425 (707)
|+++|.|||||||+|+.|++.++.. +++.|+. |+....... ........+. ++.. .-
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~-----~i~~~~l~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~---~l 66 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLP-----HISTGDLLREEIASGTE-------LGKKAKEYIDSGKLVPDEIVI---KL 66 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe-----EEECcHHHHHHHhcCCh-------HHHHHHHHHHcCCccCHHHHH---HH
Confidence 7999999999999999999986544 3555544 332211100 0000000000 0111 11
Q ss_pred HHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCC---CCC---------
Q 005233 426 MISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSP---DYA--------- 490 (707)
Q Consensus 426 ~~~~L~~--~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~p---d~s--------- 490 (707)
+...+.. .+..+|+|+...+..+++.+.+. .......++|.+.|+ ++++.+|+..|..... .|.
T Consensus 67 ~~~~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~ 145 (194)
T cd01428 67 LKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP-DEVLIERILGRRICPVSGRVYHLGKDDVTGE 145 (194)
T ss_pred HHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCcCCCcCCcCCcCCCcccCC
Confidence 1122332 25668889987777777777776 322334455666675 6777888877753210 010
Q ss_pred --CCCChHHHHHHHHHHHHhhhhhccCCC
Q 005233 491 --EEPDFEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 491 --~~~d~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
.. ..++..+.+.+|+..|+...+|+-
T Consensus 146 ~l~~-r~dd~~~~i~~R~~~y~~~~~~i~ 173 (194)
T cd01428 146 PLSQ-RSDDNEETIKKRLEVYKEQTAPLI 173 (194)
T ss_pred cccc-CCCCCHHHHHHHHHHHHHhHHHHH
Confidence 00 122334668889999988877765
No 110
>PRK14530 adenylate kinase; Provisional
Probab=98.51 E-value=1.2e-06 Score=89.17 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=78.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHH-HHHHH-----HHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPE-GMEAR-----NEVAALAMEDM 426 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~-~~~~~-----~~vA~~~l~d~ 426 (707)
.|+++|.|||||||+|+.|++.++.. .++.|++-+...+.... ......... .+-.. .++...++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~-----~i~~g~~lr~~~~~~~~-~~~~~~~~~~~~~~~g~~~~d~~~~~~l~-- 76 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVE-----HVTTGDALRANKQMDIS-DMDTEYDTPGEYMDAGELVPDAVVNEIVE-- 76 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----EEeccHHHHHhccCCcc-cccchHHHHHHHHHcCCCCCHHHHHHHHH--
Confidence 58889999999999999999997644 34555554433211111 111111100 00000 012222222
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCC----CC------------
Q 005233 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPD----YA------------ 490 (707)
Q Consensus 427 ~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd----~s------------ 490 (707)
..+. ....+|+|+...+.++++.+..+...+. ++++ .| +.+++.+|+.+|.. .+. |.
T Consensus 77 -~~l~-~~~~~IldG~pr~~~q~~~l~~~~~~d~-vI~L--d~-~~~~l~~Rl~~R~~-~~~~g~~~~~~~~~p~~~~~~ 149 (215)
T PRK14530 77 -EALS-DADGFVLDGYPRNLEQAEYLESITDLDV-VLYL--DV-SEEELVDRLTGRRV-CPDCGANYHVEFNQPEEEGVC 149 (215)
T ss_pred -HHHh-cCCCEEEcCCCCCHHHHHHHHHhcCCCE-EEEE--eC-CHHHHHHHHhCCCc-CcccCCccccCCCCCcccccC
Confidence 1122 2345788986666777666655433222 4444 45 46778888877643 111 00
Q ss_pred -------CCCChHHHHHHHHHHHHhhhhhccCCC
Q 005233 491 -------EEPDFEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 491 -------~~~d~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
.. ..++..+.+.+|+..|.+.-+|+-
T Consensus 150 ~~~~~rl~~-R~dD~~e~i~~Rl~~y~~~~~~v~ 182 (215)
T PRK14530 150 DECGGELIQ-RDDDTEETVRERLDVFEENTEPVI 182 (215)
T ss_pred cccCCcccC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 123345668889999988766653
No 111
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.49 E-value=1.6e-07 Score=95.35 Aligned_cols=146 Identities=15% Similarity=0.136 Sum_probs=79.8
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHHH-------HHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAALAMED 425 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~~l~d 425 (707)
|+++|.|||||||+|+.|+++++... ++.|+. |+....... ........+. ++...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~-----is~gdllr~~~~~~~~-------~~~~~~~~~~~g~~vp~~~~~~l--- 66 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPH-----ISTGDLLRAEIKAGTP-------LGKKAKEYMEKGELVPDEIVNQL--- 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe-----eehhHHHHHhhccccH-------HHHHHHHHHhCCCCCCHHHHHHH---
Confidence 78899999999999999999876554 444443 442211100 0000000000 111111
Q ss_pred HHHHHhc---CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcC------------C---
Q 005233 426 MISWMHE---GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS------------P--- 487 (707)
Q Consensus 426 ~~~~L~~---~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~------------p--- 487 (707)
+...+.+ .+..+|+|+...+..+.+.+.+.... ....+|.+.|+ ++++.+|+..|.... |
T Consensus 67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~-~~~~vi~L~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~ 144 (210)
T TIGR01351 67 VKERLTQNQDNENGFILDGFPRTLSQAEALDALLKE-KIDAVIELDVP-DEELVERLSGRRICPSCGRVYHLKFNPPKVP 144 (210)
T ss_pred HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhcc-CCCEEEEEECC-HHHHHHHHHCCCccCCcCCccccccCCCccC
Confidence 1223332 25678999977777777777766331 12235555665 677778887774200 0
Q ss_pred C---CCC----CCChHHHHHHHHHHHHhhhhhccCCC
Q 005233 488 D---YAE----EPDFEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 488 d---~s~----~~d~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
. ..+ . ..++-.+-+.+|+..|++...|+-
T Consensus 145 ~~~~~~~~~l~~-R~dD~~e~i~~Rl~~y~~~~~~v~ 180 (210)
T TIGR01351 145 GCDDCTGELLIQ-REDDTEEVVKKRLEVYKEQTEPLI 180 (210)
T ss_pred CcCcccCCcccc-CCCCCHHHHHHHHHHHHHhhHHHH
Confidence 0 000 0 112334567889999988777764
No 112
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.49 E-value=3.9e-07 Score=104.06 Aligned_cols=136 Identities=17% Similarity=0.221 Sum_probs=81.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
-|+++|+|||||||+|+.|++.|++..+ +.|++++...|... ..+|....+..++.++..+...+ .+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~i-----d~D~~i~~~~g~~i-~~i~~~~Ge~~fr~~E~~~l~~l-------~~ 68 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFI-----DMDEEIERREGRSV-RRIFEEDGEEYFRLKEKELLREL-------VE 68 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEE-----ECcHHHHHHcCCCH-HHHHHHhhhHHHHHHHHHHHHHH-------hh
Confidence 4899999999999999999999876654 55555765554332 34556666777765554332211 11
Q ss_pred CCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhh
Q 005233 433 GGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (707)
Q Consensus 433 ~G~vVIlDAtn--~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~ 510 (707)
....||-.... ...+.|+.++ +. .++|+. + +.+++.+|+..+ .+|...+. .+...+.|.+|.+.|+
T Consensus 69 ~~~~Vis~Gggvv~~~~~r~~l~---~~--~vI~L~--a-s~e~l~~Rl~~~--~RPLl~~~--~e~l~~L~~~R~~lY~ 136 (488)
T PRK13951 69 RDNVVVATGGGVVIDPENRELLK---KE--KTLFLY--A-PPEVLMERVTTE--NRPLLREG--KERIREIWERRKQFYT 136 (488)
T ss_pred cCCEEEECCCccccChHHHHHHh---cC--eEEEEE--C-CHHHHHHHhccC--CCCCcccc--HHHHHHHHHHHHHHHh
Confidence 22233322211 1234455443 22 255554 4 578899999754 35765432 4566678888988887
Q ss_pred hhc
Q 005233 511 KVY 513 (707)
Q Consensus 511 ~~y 513 (707)
+.+
T Consensus 137 ~~~ 139 (488)
T PRK13951 137 EFR 139 (488)
T ss_pred ccc
Confidence 643
No 113
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.48 E-value=1.6e-07 Score=91.35 Aligned_cols=132 Identities=19% Similarity=0.195 Sum_probs=78.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Q 005233 360 PARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIF 439 (707)
Q Consensus 360 PGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~~G~vVIl 439 (707)
|||||||+++.||+.|++..+++| ++-....|. ....++....++.|+..+..+...+. ...+.+|.+
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D-----~~i~~~~g~-si~~i~~~~G~~~fr~~E~~~l~~l~------~~~~~VIa~ 68 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLD-----DEIEERTGM-SISEIFAEEGEEAFRELESEALRELL------KENNCVIAC 68 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHH-----HHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHH------CSSSEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCccccC-----HHHHHHhCC-cHHHHHHcCChHHHHHHHHHHHHHHh------ccCcEEEeC
Confidence 799999999999999998875554 443333331 12345555566666655543332221 222333333
Q ss_pred eCC-CCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCCh-HHHHHHHHHHHHhhhhh
Q 005233 440 DAT-NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF-EAGLQDFKNRLANYEKV 512 (707)
Q Consensus 440 DAt-n~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~-e~a~~df~~Ri~~y~~~ 512 (707)
-+. -..++.|+.++ + +..++||. .+.+.+.+|+..+.. +|.+.+. .. +...+.+.+|.+.|++.
T Consensus 69 GGG~~~~~~~~~~L~---~-~g~vI~L~---~~~~~l~~Rl~~~~~-Rp~l~~~-~~~~~~~~~~~~R~~~Y~~~ 134 (158)
T PF01202_consen 69 GGGIVLKEENRELLK---E-NGLVIYLD---ADPEELAERLRARDN-RPLLKGK-MEHEEILELLFEREPLYEQA 134 (158)
T ss_dssp -TTGGGSHHHHHHHH---H-HSEEEEEE-----HHHHHHHHHHHCT-SGGTCSH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHH---h-CCEEEEEe---CCHHHHHHHHhCCCC-CCCCCCC-ChHHHHHHHHHHHHHHHHhc
Confidence 222 23445555555 2 33577876 367889999987765 7888765 33 24556666888888764
No 114
>PRK04040 adenylate kinase; Provisional
Probab=98.41 E-value=2.8e-06 Score=85.35 Aligned_cols=39 Identities=31% Similarity=0.378 Sum_probs=31.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
+.+|+++|.|||||||+++.|++.|. ....+++.|++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~~~~g~~~~ 40 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKIVNFGDVML 40 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeEEecchHHH
Confidence 57899999999999999999999974 2344567777754
No 115
>PRK06696 uridine kinase; Validated
Probab=98.38 E-value=1.8e-06 Score=88.62 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=38.2
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
..+|++|.+.|.|||||||+|++|++.|+..|..+.+++.|+|-
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 45799999999999999999999999998777777777777774
No 116
>PRK06217 hypothetical protein; Validated
Probab=98.36 E-value=4.3e-06 Score=83.07 Aligned_cols=128 Identities=18% Similarity=0.206 Sum_probs=66.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
-|+++|.|||||||+|++|++.|+... ++.|++.... . ...+...... ..+...+... +.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~-----~~~D~~~~~~---~-~~~~~~~~~~---~~~~~~~~~~-------~~- 62 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPH-----LDTDDYFWLP---T-DPPFTTKRPP---EERLRLLLED-------LR- 62 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcE-----EEcCceeecc---C-CCCccccCCH---HHHHHHHHHH-------Hh-
Confidence 499999999999999999999976443 4444443211 1 1111111111 1111111111 22
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhc---CCCCCCCCChHHHHHHHHHHHHhh
Q 005233 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ---SPDYAEEPDFEAGLQDFKNRLANY 509 (707)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~---~pd~s~~~d~e~a~~df~~Ri~~y 509 (707)
.+...|+|+.... .++.+. ...+ .++||+ | +.+++.+|+..|... .|...+. +.+....+|.+++..|
T Consensus 63 ~~~~~vi~G~~~~--~~~~~~--~~~d-~~i~Ld--~-~~~~~~~Rl~~R~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~ 133 (183)
T PRK06217 63 PREGWVLSGSALG--WGDPLE--PLFD-LVVFLT--I-PPELRLERLRLREFQRYGNRILPGG-DMHKASLEFLEWAASY 133 (183)
T ss_pred cCCCEEEEccHHH--HHHHHH--hhCC-EEEEEE--C-CHHHHHHHHHcCcccccCcccCCCC-CHHHHHHHHHHHHHhc
Confidence 3455777855432 222222 2223 356665 3 577888888877532 2222233 4556666677776554
No 117
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.31 E-value=2.5e-06 Score=78.19 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=27.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+|+++|.|||||||+|+.|++.++ ..+++.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-----~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-----FPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-----CEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-----CeEEEecce
Confidence 689999999999999999999874 335677775
No 118
>PRK03839 putative kinase; Provisional
Probab=98.31 E-value=1e-06 Score=87.05 Aligned_cols=30 Identities=30% Similarity=0.344 Sum_probs=25.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCce
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~t 382 (707)
.|+++|+|||||||+|+.|++.++...+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 589999999999999999999987654333
No 119
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.27 E-value=3.6e-05 Score=82.58 Aligned_cols=130 Identities=13% Similarity=0.157 Sum_probs=82.4
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC--------CCCC------C-CCCH----
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--------ADFF------R-ADNP---- 409 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~--------~~f~------~-~~~e---- 409 (707)
..|++|+++|.+||||||+|++|+++|+. . .+++.|..|+.+...... ..|. . +..+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~---~-~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l 165 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGI---R-SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVI 165 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC---C-EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhh
Confidence 46899999999999999999999999753 3 356667777544321100 0110 0 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhc
Q 005233 410 EGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ 485 (707)
Q Consensus 410 ~~~~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~ 485 (707)
.+|..-.+.....++.++.-..+.|..+|+-+....++..+... .++. .++.+.|...+++.+++|+..|.+.
T Consensus 166 ~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~--~~~~-~~i~~~l~i~~ee~h~~RF~~R~~~ 238 (301)
T PRK04220 166 YGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKY--LENP-NVFMFVLTLSDEEAHKARFYARARV 238 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhh--hcCC-CEEEEEEEECCHHHHHHHHHHHHhh
Confidence 12333333333345556665556799999999999998643311 2222 2445566778999999999888763
No 120
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.26 E-value=7.4e-06 Score=81.51 Aligned_cols=151 Identities=14% Similarity=0.085 Sum_probs=82.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH------H
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED------M 426 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d------~ 426 (707)
+|.++|.|||||||+|+.|++.|...+.++.+++.|+|-+-........+.++....-.+..+.+....+.+. .
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 5889999999999999999999998888999999999965220111111222221111122222222211110 0
Q ss_pred HHH-----------HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHH-HHHHHHHHhhhcCCCCCCCCC
Q 005233 427 ISW-----------MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRD-IIERNIRLKIQQSPDYAEEPD 494 (707)
Q Consensus 427 ~~~-----------L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e-~i~~rI~~r~~~~pd~s~~~d 494 (707)
+++ ......++|+++.+.... .++++.. + .+||+ ++.+. .+.+|+.+.... .+. +
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~---~l~~~~d--~-~I~vd--~~~~~~rl~rri~RD~~~----rg~-~ 147 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNE---RLRSLLD--I-RVAVS--GGVHLNRLLRRVVRDIQF----RGY-S 147 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCH---hHHhhcC--E-EEEEe--CCccHHHHHHHHHHhHHh----hCC-C
Confidence 000 001346899998887632 3444422 1 34555 33333 466666554332 233 5
Q ss_pred hHHHHHHHHHHHHhhhhhccCCC
Q 005233 495 FEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 495 ~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
.+..+.. ..+++.++..|+|.-
T Consensus 148 ~~~~i~~-~~~~~~~~~~~~~~~ 169 (179)
T cd02028 148 AELTILM-WPSVPSGEEFIIPPL 169 (179)
T ss_pred HHHHhhh-cccccCchhhcCCCc
Confidence 5666555 456677777776543
No 121
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.25 E-value=4.9e-05 Score=75.00 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=29.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
++|++.|.+||||||+++.|+++|...|..+..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4799999999999999999999998777776555
No 122
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.25 E-value=6.4e-05 Score=75.13 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=29.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEE
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (707)
+.+|++.|.+||||||+++.|+++|...|..+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 5799999999999999999999999776655443
No 123
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.23 E-value=8.7e-06 Score=81.79 Aligned_cols=27 Identities=33% Similarity=0.305 Sum_probs=24.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.+.+|+++|.+||||||+++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456899999999999999999998864
No 124
>PLN02674 adenylate kinase
Probab=98.22 E-value=6.4e-06 Score=86.07 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=84.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHH-------HHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-------EVAALAM 423 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~~l 423 (707)
+.-|++.|.|||||+|+|+.|++++++.. ++.|+.-|........ .+......+. ++...++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h-----is~GdllR~~i~~~s~------~g~~i~~~~~~G~lvpd~iv~~lv 99 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH-----LATGDMLRAAVAAKTP------LGIKAKEAMDKGELVSDDLVVGII 99 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE-----EchhHHHHHHHhccCh------hhHHHHHHHHcCCccCHHHHHHHH
Confidence 45688999999999999999999977655 4445553322111110 0111111110 1112222
Q ss_pred HHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhc---C---------C
Q 005233 424 EDMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ---S---------P 487 (707)
Q Consensus 424 ~d~~~~L~--~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r~~~---~---------p 487 (707)
. ..|. ..+..+|+|+.-.+..+-+.+.++ ...+..+ .+|++.|+ ++++.+|+..|... . |
T Consensus 100 ~---~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~pp 175 (244)
T PLN02674 100 D---EAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAID-DAILEERITGRWIHPSSGRTYHTKFAPP 175 (244)
T ss_pred H---HHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhccccccccCCccccccCCC
Confidence 2 1222 224679999988888887777766 4334332 35555664 67777888776421 0 0
Q ss_pred CCCC----------CCChHHHHHHHHHHHHhhhhhccCCC
Q 005233 488 DYAE----------EPDFEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 488 d~s~----------~~d~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
...+ . ..++-.+-..+|+..|.+.-+|+-
T Consensus 176 ~~~~~~~~~g~~L~~-R~DD~~e~i~~RL~~Y~~~t~pv~ 214 (244)
T PLN02674 176 KVPGVDDVTGEPLIQ-RKDDTAAVLKSRLEAFHKQTEPVI 214 (244)
T ss_pred cccCcccccCCcccc-CCCCCHHHHHHHHHHHHHHhHHHH
Confidence 0000 0 223345667889999988777764
No 125
>PRK02496 adk adenylate kinase; Provisional
Probab=98.22 E-value=8.2e-06 Score=80.85 Aligned_cols=138 Identities=15% Similarity=0.184 Sum_probs=74.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 424 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~l~ 424 (707)
-|++.|.|||||||+|+.|++.++... ++.|+. |+....... ........+ .++...++.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~-----i~~~~~~~~~~~~~~~-------~g~~~~~~~~~g~~~~~~~~~~~l~ 70 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPH-----ISTGDILRQAIKEQTP-------LGIKAQGYMDKGELVPDQLVLDLVQ 70 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE-----EEhHHHHHHHHhccCh-------hHHHHHHHHHCCCccCHHHHHHHHH
Confidence 478899999999999999999876443 444444 332211100 000000000 011111111
Q ss_pred HHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCc-eEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 005233 425 DMISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (707)
Q Consensus 425 d~~~~L~~--~G~vVIlDAtn~~~e~R~~l~~l-~~~~~-~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~ 500 (707)
..+.+ ....+|+|+...+..+...+.++ ...+. ...+|.+.| +++++.+|+..|.+ +| +.+ +
T Consensus 71 ---~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~--~d-----d~~---~ 136 (184)
T PRK02496 71 ---ERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDV-PDDVVVERLLARGR--KD-----DTE---E 136 (184)
T ss_pred ---HHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHhcCCC--CC-----CCH---H
Confidence 22221 23457889988887776666655 32221 223444555 47788888877632 21 222 3
Q ss_pred HHHHHHHhhhhhccCC
Q 005233 501 DFKNRLANYEKVYEPV 516 (707)
Q Consensus 501 df~~Ri~~y~~~yEpl 516 (707)
-+.+|+..|++.-+|+
T Consensus 137 ~~~~r~~~y~~~~~~v 152 (184)
T PRK02496 137 VIRRRLEVYREQTAPL 152 (184)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667888887744443
No 126
>PRK14528 adenylate kinase; Provisional
Probab=98.21 E-value=1e-05 Score=80.87 Aligned_cols=145 Identities=16% Similarity=0.154 Sum_probs=77.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS-----ADFFRADNPEGMEARNEVAALAMEDM 426 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~-----~~f~~~~~e~~~~~~~~vA~~~l~d~ 426 (707)
.|++.|.|||||||+|+.|+++++... ++.|+. |.... .+.. ..|...... .-..+.... +
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~-----is~~~~lr~~~~-~~~~~g~~~~~~~~~g~l----vp~~~~~~~---~ 69 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQ-----ISTGDILREAVK-NQTAMGIEAKRYMDAGDL----VPDSVVIGI---I 69 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe-----eeCCHHHHHHhh-cCCHHHHHHHHHHhCCCc----cCHHHHHHH---H
Confidence 478899999999999999999876443 445555 33221 1100 000000000 000111111 1
Q ss_pred HHHHhc--CCeEEEEeCCCCCHHHHHHHHHH-HcCCc-eEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 005233 427 ISWMHE--GGQVGIFDATNSSRKRRNMLMKM-AEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDF 502 (707)
Q Consensus 427 ~~~L~~--~G~vVIlDAtn~~~e~R~~l~~l-~~~~~-~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df 502 (707)
...+.+ ....+|+|+--.+.++-+.+.++ ...+. .-.+|.+.|+ ++++.+|+..|..... ..++..+-+
T Consensus 70 ~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~-~~~~~~Rl~~R~~~~g------r~dd~~e~i 142 (186)
T PRK14528 70 KDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVP-DGELLKRLLGRAEIEG------RADDNEATI 142 (186)
T ss_pred HHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCccccC------CCCCCHHHH
Confidence 122222 23458889865566666666665 33222 2245555675 5677777776643111 112233457
Q ss_pred HHHHHhhhhhccCCC
Q 005233 503 KNRLANYEKVYEPVD 517 (707)
Q Consensus 503 ~~Ri~~y~~~yEpl~ 517 (707)
.+|+..|.+..+|+-
T Consensus 143 ~~Rl~~y~~~~~pv~ 157 (186)
T PRK14528 143 KNRLDNYNKKTLPLL 157 (186)
T ss_pred HHHHHHHHHHhHHHH
Confidence 889999988888875
No 127
>PRK08356 hypothetical protein; Provisional
Probab=98.21 E-value=4.9e-05 Score=76.37 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=60.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCC-CC------CHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFR-AD------NPEGMEARNEVAAL 421 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~-~~------~e~~~~~~~~vA~~ 421 (707)
..++|+++|.|||||||+|+.|++ + ++. +++.++. ++.. .......+|. +. ....+....+++..
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~---g~~--~is~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~ 76 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-K---GFC--RVSCSDPLIDLL-THNVSDYSWVPEVPFKGEPTRENLIELGRYLKE 76 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-C---CCc--EEeCCCcccccc-cccccccccccHHHHhhccccccHHHHHHHHHH
Confidence 457899999999999999999963 2 443 3444443 2211 1111111111 10 01111111121110
Q ss_pred ------HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 422 ------AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 422 ------~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
..+.++..+.. +..+|+|+. .+...++.+... +..++||. | +.+++.+|+..|..
T Consensus 77 ~yG~~~~~~~~~~~~~~-~~~ividG~-r~~~q~~~l~~~---~~~vi~l~--~-~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 77 KYGEDILIRLAVDKKRN-CKNIAIDGV-RSRGEVEAIKRM---GGKVIYVE--A-KPEIRFERLRRRGA 137 (195)
T ss_pred hcCcHHHHHHHHHHhcc-CCeEEEcCc-CCHHHHHHHHhc---CCEEEEEE--C-CHHHHHHHHHhcCC
Confidence 00111222322 336888977 666665555542 23455554 5 46888889887754
No 128
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.19 E-value=9.3e-06 Score=80.92 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.+|+++|.+|||||||++.|+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999988754
No 129
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.18 E-value=2.3e-05 Score=73.83 Aligned_cols=145 Identities=16% Similarity=0.130 Sum_probs=74.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
+|+++|.|||||||+|+.|++.++...++.+.+....+.+.... .. ... ...+....... -+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~---~~-----~~~----~i~~~l~~~~~----~~~~ 64 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASE---VA-----AIP----EVRKALDERQR----ELAK 64 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHH---hc-----ccH----hHHHHHHHHHH----HHhh
Confidence 58999999999999999999998765555553322111110000 00 000 01111111111 1222
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHh-hhh
Q 005233 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLAN-YEK 511 (707)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~-y~~ 511 (707)
+..+|+|+...... +......++||+ .++++..+|+..|....- .+. +++++.+.+.+|-.. ++.
T Consensus 65 -~~~~Vidg~~~~~~-------~~~~~~~~i~l~---~~~~~r~~R~~~r~~~~~--~~~-~~~~~~~~~~~~d~~~~~~ 130 (147)
T cd02020 65 -KPGIVLEGRDIGTV-------VFPDADLKIFLT---ASPEVRAKRRAKQLQAKG--EGV-DLEEILAEIIERDERDSTR 130 (147)
T ss_pred -CCCEEEEeeeeeeE-------EcCCCCEEEEEE---CCHHHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHHhhhc
Confidence 33567787653110 111111234443 456666666655432111 123 688888888877543 355
Q ss_pred hccCCCCCCeeEEeec
Q 005233 512 VYEPVDEGSYIKMIDM 527 (707)
Q Consensus 512 ~yEpl~e~~yik~in~ 527 (707)
.++|.+...|-.+||+
T Consensus 131 ~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 131 YVAPLKLAEDAIVIDT 146 (147)
T ss_pred ccccccCCCCcEEEeC
Confidence 5566655577677764
No 130
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.17 E-value=1.4e-05 Score=78.45 Aligned_cols=27 Identities=30% Similarity=0.227 Sum_probs=23.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
.+|+++|.+||||||+++.|++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccc
Confidence 489999999999999999999876543
No 131
>PRK08233 hypothetical protein; Provisional
Probab=98.17 E-value=4.3e-05 Score=74.83 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++++|++.|.|||||||+|+.|++.|.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 358999999999999999999999875
No 132
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.15 E-value=2.3e-05 Score=77.19 Aligned_cols=27 Identities=22% Similarity=0.047 Sum_probs=23.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
.+|+++|.|||||||+++.|+..+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 378999999999999999999887643
No 133
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.13 E-value=2.3e-05 Score=78.69 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=24.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++.+|+|+|.||||||||++.|.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 688999999999999999999988754
No 134
>PRK06761 hypothetical protein; Provisional
Probab=98.12 E-value=1.4e-05 Score=85.27 Aligned_cols=123 Identities=14% Similarity=0.102 Sum_probs=75.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
+.+|+++|+|||||||+++.|+++|...+++.+.+..++. +.... .....|..++.....+.....++...+ ..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~~~~~~eer~~~l~~~~~f~~~l~~---~~ 77 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGVACFTKEEFDRLLSNYPDFKEVLLK---NV 77 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccccCCCHHHHHHHHHhhhHHHHHHHH---HH
Confidence 3589999999999999999999999988988887654332 22111 122233333333334444444433222 11
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHH-H-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMK-M-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~-l-~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
+ ..|..+|+-..-.....|+.+.. + ... .+.++. . -+++.+++|+.+|.
T Consensus 78 ~-~~g~~~i~~~~~l~~~yr~~~~~~~~~~~--~v~~~h-~-~p~e~i~~R~~~rw 128 (282)
T PRK06761 78 L-KKGDYYLLPYRKIKNEFGDQFSDELFNDI--SKNDIY-E-LPFDKNTELITDRW 128 (282)
T ss_pred H-HcCCeEEEEehhhhHHHhhhhhhhhcccc--eeeeee-c-CCHHHHHHHHHHHH
Confidence 2 25788888787778888888875 2 222 233333 3 36788888887664
No 135
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.12 E-value=0.00023 Score=70.82 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=30.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
.++|++.|.|||||||+++.|++.|...|..+..+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 57899999999999999999999999877666443
No 136
>PRK07667 uridine kinase; Provisional
Probab=98.12 E-value=5.7e-05 Score=75.95 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=38.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
.+++|.++|.|||||||+|+.|++.|...++++.+++.|+|
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 45899999999999999999999999988999999999986
No 137
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.12 E-value=2.4e-05 Score=79.56 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.2
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+.+|+++|.||+|||||++.|.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46789999999999999999999764
No 138
>PRK13975 thymidylate kinase; Provisional
Probab=98.10 E-value=6.2e-05 Score=74.97 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=24.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+++|++.|++||||||+|+.|+++|+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999999999874
No 139
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.10 E-value=4.1e-05 Score=79.42 Aligned_cols=151 Identities=20% Similarity=0.208 Sum_probs=81.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHH-------HHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-------EVAALA 422 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~~ 422 (707)
.|+-|++.|.|||||||+|+.|++.++... ++.|+.-+........ + .......+. ++....
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~-----is~gdllr~~~~~~t~--l----g~~i~~~~~~G~lvpd~iv~~l 73 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKH-----INMGNILREEIKAKTT--I----GKEIQKVVTSGNLVPDNLVIAI 73 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcE-----EECChHHHHHhhcCCh--H----HHHHHHHHHcCCcCCHHHHHHH
Confidence 345599999999999999999999977655 4444443322211110 0 010000000 111112
Q ss_pred HHHHHHH-HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCC-------------
Q 005233 423 MEDMISW-MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPD------------- 488 (707)
Q Consensus 423 l~d~~~~-L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd------------- 488 (707)
+.+-+.- +...+...|+|+..-+..++..+.+... ...+|...++ .+++.+|+..|.. .|.
T Consensus 74 v~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~~~---~~~vi~l~~~-~~~~~~Rl~~Rr~-~~~~g~~y~~~~~~~~ 148 (229)
T PTZ00088 74 VKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITN---IDLFVNIYLP-RNILIKKLLGRRI-CNTCNRNFNIAHIRSD 148 (229)
T ss_pred HHHHHHhhccccCceEEEecCCCCHHHHHHHHhcCC---CCEEEEEeCC-HHHHHHHHHcCcC-CCccCCcceecccccc
Confidence 2211111 1234567899997667777766655421 2234555665 5556666666531 010
Q ss_pred -CC-------------------CCCChHHHHHHHHHHHHhhhhhccCCC
Q 005233 489 -YA-------------------EEPDFEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 489 -~s-------------------~~~d~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
|. .. ..++-.+-+.+|+..|++.-+|+-
T Consensus 149 ~~~~pp~~~~~~c~~~~~~~~l~~-R~DD~~e~i~~Rl~~Y~~~t~pl~ 196 (229)
T PTZ00088 149 PYDMPPILPPADCEGCKGNPKLQK-RSDDTEEIVAHRLNTYESTNSPII 196 (229)
T ss_pred cccCCCCCCCCcccccCCcccccC-CCCCCHHHHHHHHHHHHHHhHHHH
Confidence 00 01 233445667889999988777764
No 140
>PRK14526 adenylate kinase; Provisional
Probab=98.08 E-value=7.1e-06 Score=83.99 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=78.6
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 425 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~l~d 425 (707)
|+++|.|||||||+|+.|++.++... ++.|+. |+.... ... ........+ .+++...+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~-----is~G~llr~~~~~-~t~------~g~~i~~~~~~g~lvpd~~~~~lv~- 69 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH-----ISTGDLFRENILN-STP------LGKEIKQIVENGQLVPDSITIKIVE- 69 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce-----eecChHHHHhccc-CCh------hhHHHHHHHHcCccCChHHHHHHHH-
Confidence 77899999999999999998876554 444444 332211 100 001111111 012222222
Q ss_pred HHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcC------------C----
Q 005233 426 MISWMHE--GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQS------------P---- 487 (707)
Q Consensus 426 ~~~~L~~--~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~------------p---- 487 (707)
..|.. ....+|+|+..-+.++-+.+.++.. . ..+|.+.|+ ++++.+|+..|.... |
T Consensus 70 --~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~~-~--~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~ 143 (211)
T PRK14526 70 --DKINTIKNNDNFILDGFPRNINQAKALDKFLP-N--IKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKG 143 (211)
T ss_pred --HHHhcccccCcEEEECCCCCHHHHHHHHHhcC-C--CEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccC
Confidence 22221 2456788987777666666655422 1 234555664 677788887764311 0
Q ss_pred -------CCCCCCChHHHHHHHHHHHHhhhhhccCCC
Q 005233 488 -------DYAEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 488 -------d~s~~~d~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
... . ..++..+-+.+|+..|++.-+|+-
T Consensus 144 ~~~~~~~~l~-~-R~DD~~e~i~~Rl~~y~~~t~pv~ 178 (211)
T PRK14526 144 ICDVCKGDLY-Q-RKDDKEESLKTRLQEYKLQTKPLI 178 (211)
T ss_pred cCCCCCCeee-c-cCCCCHHHHHHHHHHHHHhhhHHH
Confidence 000 1 233445677899999988877764
No 141
>PRK07261 topology modulation protein; Provisional
Probab=98.08 E-value=1.3e-05 Score=79.04 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=24.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCce
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~t 382 (707)
-|+++|.|||||||+|+.|++.++...++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~ 31 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHL 31 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEec
Confidence 388999999999999999998865443333
No 142
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.07 E-value=1.2e-05 Score=77.98 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=28.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
++|+++|.|||||||+|+.|++.|+.. +++.|++.+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~-----~~~~~~~~~ 36 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLK-----LISAGDIFR 36 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCc-----eecHHHHHH
Confidence 479999999999999999999986544 466555433
No 143
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.06 E-value=1.4e-05 Score=78.05 Aligned_cols=133 Identities=21% Similarity=0.230 Sum_probs=68.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh-hHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK-YRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd-yRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
++|.+.|+|||||||+|+.|+++|+...++ .|+ +|.+....+.+..-|....+...+ +=+..-+ ...-+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vs-----aG~iFR~~A~e~gmsl~ef~~~AE~~p~----iD~~iD~-rq~e~ 70 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVS-----AGTIFREMARERGMSLEEFSRYAEEDPE----IDKEIDR-RQKEL 70 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceee-----ccHHHHHHHHHcCCCHHHHHHHHhcCch----hhHHHHH-HHHHH
Confidence 368899999999999999999998765433 332 366443333321111111010000 0000111 11112
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhhh
Q 005233 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANYE 510 (707)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y~ 510 (707)
.+.|.+|+ ..+...|.......++ +|+ .+ +.++..+||.+|.. . +.+++.+...+|=...+
T Consensus 71 a~~~nvVl-------egrLA~Wi~k~~adlk-I~L--~A-pl~vRa~Ria~REg-------i-~~~~a~~~~~~RE~se~ 131 (179)
T COG1102 71 AKEGNVVL-------EGRLAGWIVREYADLK-IWL--KA-PLEVRAERIAKREG-------I-DVDEALAETVEREESEK 131 (179)
T ss_pred HHcCCeEE-------hhhhHHHHhccccceE-EEE--eC-cHHHHHHHHHHhcC-------C-CHHHHHHHHHHHHHHHH
Confidence 22455555 2344444443223332 333 44 57888899988753 2 67777766666554433
Q ss_pred hhc
Q 005233 511 KVY 513 (707)
Q Consensus 511 ~~y 513 (707)
+-|
T Consensus 132 kRY 134 (179)
T COG1102 132 KRY 134 (179)
T ss_pred HHH
Confidence 333
No 144
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.05 E-value=6.2e-05 Score=80.63 Aligned_cols=108 Identities=13% Similarity=0.152 Sum_probs=62.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
..+|+++|++||||||+++.|+. +++.. + +.. .. ..+.+++..+... .
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~~~-----~--d~~-----------------~~---~L~~~l~~~~~~~---~- 53 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED-LGYYC-----V--DNL-----------------PP---SLLPKLVELLAQS---G- 53 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-cCCeE-----E--CCc-----------------CH---HHHHHHHHHHHhc---C-
Confidence 35899999999999999999973 23211 1 111 11 1112222221110 0
Q ss_pred hcCCeEEEEeCCCC--CHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCC
Q 005233 431 HEGGQVGIFDATNS--SRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAE 491 (707)
Q Consensus 431 ~~~G~vVIlDAtn~--~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~ 491 (707)
......|++|..+. .++.++.+..+.+.|+.+.+|...| +.+++.+|+....+.+|...+
T Consensus 54 ~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a-~~e~L~~Rl~~~rr~RPLl~~ 115 (288)
T PRK05416 54 GIRKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDA-SDEVLIRRYSETRRRHPLSGD 115 (288)
T ss_pred CCCCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHHHhhcccCCCccCC
Confidence 01346888999876 3456677777755565443333344 578888998765445676543
No 145
>PRK13973 thymidylate kinase; Provisional
Probab=98.02 E-value=0.00042 Score=70.75 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=31.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+++|++-|.+||||||.++.|+++|...|+++...
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57999999999999999999999998888887655
No 146
>PLN02459 probable adenylate kinase
Probab=98.01 E-value=1.8e-05 Score=83.41 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=65.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHHH-------HHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAAL 421 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~ 421 (707)
+++.|++.|-|||||||+|+.|+++++... ++.|+. |+... .... ........+. ++...
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~-----is~gdllR~ei~-~~t~------lg~~i~~~~~~G~lVPdeiv~~ 95 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPH-----IATGDLVREEIK-SSGP------LGAQLKEIVNQGKLVPDEIIFS 95 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcE-----EeCcHHHHHHHh-ccch------hHHHHHHHHHcCCccCHHHHHH
Confidence 456688899999999999999999976554 444444 43221 1110 0111111111 12222
Q ss_pred HHHHHHHHH-hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 422 AMEDMISWM-HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 422 ~l~d~~~~L-~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
++.+-+.-. ......+|+|+---+.++-+.+..+.. . -.+|++.|+ ++++.+|+..|.
T Consensus 96 ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~--i-d~Vi~L~v~-d~~l~~Rl~gR~ 154 (261)
T PLN02459 96 LLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTD--I-DLVVNLKLR-EEVLVEKCLGRR 154 (261)
T ss_pred HHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhcCC--C-CEEEEEECC-HHHHHHHhhccc
Confidence 222111111 112467999998888877776665532 2 235555675 566777777664
No 147
>PRK14529 adenylate kinase; Provisional
Probab=98.01 E-value=2.6e-05 Score=80.53 Aligned_cols=115 Identities=12% Similarity=0.189 Sum_probs=66.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMEDM 426 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~l~d~ 426 (707)
|+|.|.|||||||+|+.|+++++..++++-.+ .|....+ .. +...+....+ .++...++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdl----lr~~i~~-~t------~lg~~i~~~i~~G~lvpdei~~~lv--- 68 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAI----FREHIGG-GT------ELGKKAKEYIDRGDLVPDDITIPMI--- 68 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchh----hhhhccC-CC------hHHHHHHHHHhccCcchHHHHHHHH---
Confidence 78899999999999999999988776644222 1332111 00 0011111111 01222222
Q ss_pred HHHHhcC-CeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhh
Q 005233 427 ISWMHEG-GQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 427 ~~~L~~~-G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r~ 483 (707)
.+.|.+. ....|+|+.--+.++-+.+.++ ...+..+ .+|+..|+ ++++.+|+..|.
T Consensus 69 ~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~ 127 (223)
T PRK14529 69 LETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLP-REVAKNRIMGRR 127 (223)
T ss_pred HHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHhhCCc
Confidence 2233322 4669999999998888877765 3333322 35555665 577777877764
No 148
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.01 E-value=0.00011 Score=72.13 Aligned_cols=135 Identities=19% Similarity=0.311 Sum_probs=78.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~ 431 (707)
||+=++-+||||||+|.+|+.-++ |-.+..|-+... ++ . +.++.+++ -|+
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k--~~----------------~-------~f~~~~l~----~L~ 51 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK--RK----------------P-------KFIKAVLE----LLA 51 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC--CH----------------H-------HHHHHHHH----HHh
Confidence 466678999999999999999998 877666655221 11 1 11222222 122
Q ss_pred -cCCeEEEEeCCCCCHHHHHHHHHH---HcC-------CceEEEEEEEeCC-HH----HHHHHHHHhhhcCCCCCCCCCh
Q 005233 432 -EGGQVGIFDATNSSRKRRNMLMKM---AEG-------NCKIIFLETICND-RD----IIERNIRLKIQQSPDYAEEPDF 495 (707)
Q Consensus 432 -~~G~vVIlDAtn~~~e~R~~l~~l---~~~-------~~~vifIE~~c~d-~e----~i~~rI~~r~~~~pd~s~~~d~ 495 (707)
..-.+||+|=.|.....|+++++. .+. +++++-|-..-++ .+ +...|+..|.-.....+.. ..
T Consensus 52 ~~~~~vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~-~~ 130 (168)
T PF08303_consen 52 KDTHPVVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKAD-SK 130 (168)
T ss_pred hCCCCEEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecC-CC
Confidence 357899999999998888888765 222 5566666554332 23 4445555443211112211 10
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCC
Q 005233 496 EAGLQDFKNRLANYEKVYEPVDEG 519 (707)
Q Consensus 496 e~a~~df~~Ri~~y~~~yEpl~e~ 519 (707)
-.+....=|..+.+-|||++..
T Consensus 131 --~~~~~~~Im~gFi~rfep~~~~ 152 (168)
T PF08303_consen 131 --DEKKVEGIMEGFIKRFEPVDPD 152 (168)
T ss_pred --CHHHHHHHHHHHHHhcCCCCCC
Confidence 1233444556666678888753
No 149
>PRK08118 topology modulation protein; Reviewed
Probab=98.00 E-value=2.6e-05 Score=76.83 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=25.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
-|+++|.|||||||+|++|++.++...++.|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 3889999999999999999999776554444
No 150
>PRK06547 hypothetical protein; Provisional
Probab=98.00 E-value=4.3e-05 Score=75.77 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=26.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
..+.+|+++|.|||||||+|+.|++.++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~ 42 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQ 42 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468899999999999999999999986543
No 151
>PRK04182 cytidylate kinase; Provisional
Probab=97.99 E-value=7.4e-06 Score=79.94 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=24.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
++|+++|.|||||||+|+.|++.|++..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~ 28 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKH 28 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 3799999999999999999999977543
No 152
>PRK15453 phosphoribulokinase; Provisional
Probab=97.99 E-value=3.4e-05 Score=81.97 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=39.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
++.+|+++|-|||||||+|++|++.|+..++.+.++..|+|.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 5679999999999999999999999988888888999998865
No 153
>PRK13808 adenylate kinase; Provisional
Probab=97.98 E-value=1.5e-05 Score=86.65 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=77.9
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAMED 425 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~l~d 425 (707)
|+|.|-|||||||+|+.|++.++... ++.|+. |... ..... ........+ .++...++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~-----is~gdlLR~~i-~~~s~------~g~~~~~~~~~G~lVPdeiv~~li~- 69 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQ-----LSTGDMLRAAV-AAGTP------VGLKAKDIMASGGLVPDEVVVGIIS- 69 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce-----ecccHHHHHHh-hcCCh------hhHHHHHHHHcCCCCCHHHHHHHHH-
Confidence 78899999999999999999876544 444443 3321 11110 000000000 011111111
Q ss_pred HHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHHhhhcCCC-CCCCCChHHHHH
Q 005233 426 MISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKIQQSPD-YAEEPDFEAGLQ 500 (707)
Q Consensus 426 ~~~~L~--~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~-vifIE~~c~d~e~i~~rI~~r~~~~pd-~s~~~d~e~a~~ 500 (707)
..|. .....+|+|+-..+.++.+.+.++ ...++. -++|++.|+ ++++.+|+..|...... -... ..++-.+
T Consensus 70 --e~l~~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp-~evll~Rl~~R~~~~~~rg~~~-R~DD~~E 145 (333)
T PRK13808 70 --DRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVN-EGALLARVETRVAEMRARGEEV-RADDTPE 145 (333)
T ss_pred --HHHhcccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECC-HHHHHHHHHcCcccccccCCcc-CCCCCHH
Confidence 1121 123468889866666777776665 333332 245555664 67777887765321000 0001 2233446
Q ss_pred HHHHHHHhhhhhccCCC
Q 005233 501 DFKNRLANYEKVYEPVD 517 (707)
Q Consensus 501 df~~Ri~~y~~~yEpl~ 517 (707)
.|.+|+..|+..-+|+-
T Consensus 146 ~i~kRL~~Y~~~t~PLl 162 (333)
T PRK13808 146 VLAKRLASYRAQTEPLV 162 (333)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 68889999988766653
No 154
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.98 E-value=8.3e-05 Score=74.22 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=78.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHH-------HHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR-------NEVAALAME 424 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~~l~ 424 (707)
-|++.|.|||||||+|++|++.++-..+++ |++ |.... .. .+...+....+ ..+...++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlst-----gd~~r~~~~---~~----t~lg~~~k~~i~~g~lv~d~i~~~~v~ 69 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDT-----GDILRAAIA---ER----TELGEEIKKYIDKGELVPDEIVNGLVK 69 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcH-----hHHhHhhhc---cC----ChHHHHHHHHHHcCCccchHHHHHHHH
Confidence 378999999999999999999966555443 333 22110 00 01111111101 012222222
Q ss_pred HHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 005233 425 DMISWMHEG--GQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (707)
Q Consensus 425 d~~~~L~~~--G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~ 500 (707)
.++.+. ...+|+|....+...-+.+..+ .+.|.+. ..+++.+++ +.+-.|+-.|.. ++ ++..+
T Consensus 70 ---~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~-r~--------dd~~~ 136 (178)
T COG0563 70 ---ERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRV-RE--------DDNEE 136 (178)
T ss_pred ---HHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHHHHhCccc-cc--------cCCHH
Confidence 223221 2279999988887765666555 5545433 345556654 777777766532 11 12234
Q ss_pred HHHHHHHhhhhhccCCCC
Q 005233 501 DFKNRLANYEKVYEPVDE 518 (707)
Q Consensus 501 df~~Ri~~y~~~yEpl~e 518 (707)
.+.+|+..|.+.-.|+-+
T Consensus 137 ~~~~R~~~y~~~~~pli~ 154 (178)
T COG0563 137 TVKKRLKVYHEQTAPLIE 154 (178)
T ss_pred HHHHHHHHHHhcccchhh
Confidence 568889998888777653
No 155
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.91 E-value=7.6e-05 Score=74.87 Aligned_cols=152 Identities=17% Similarity=0.235 Sum_probs=84.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCc----eEEEechhhHHHh-----hCC-CCCCCCCCCCCHHHHHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD----TKHFNVGKYRRLK-----HGV-NQSADFFRADNPEGMEARNEVAALA 422 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~----tdv~~~ddyRr~~-----~g~-~~~~~f~~~~~e~~~~~~~~vA~~~ 422 (707)
||-++|.|||||||+|++|+..|+..++. ..++..++|.+.. .+. .....|... ..-.+..+.+....+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p-~a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHP-DAFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSG-GGBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCc-cccCHHHHHHHHHHH
Confidence 68899999999999999999999988776 4556666553211 111 111112111 111133333322221
Q ss_pred HHHH------HHH----------HhcCCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhc
Q 005233 423 MEDM------ISW----------MHEGGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ 485 (707)
Q Consensus 423 l~d~------~~~----------L~~~G~vVIlDAtn~~-~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~ 485 (707)
.+-- +++ ......+||+++.+.. .+. ++.+.. + .+||+ ++.+..+.||+.+....
T Consensus 80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~---l~~l~D--~-~ifld--~~~~~~l~Rri~RD~~~ 151 (194)
T PF00485_consen 80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE---LRDLFD--L-KIFLD--ADEDLRLERRIQRDVAE 151 (194)
T ss_dssp HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC---HGGG-S--E-EEEEE--E-HHHHHHHHHHHHHHH
T ss_pred hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee---ecccce--e-EEEec--ccHHHHHHHHhhhhccc
Confidence 1100 000 0123468888888854 222 333322 2 35776 44445677787766542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhhhhccCCCC
Q 005233 486 SPDYAEEPDFEAGLQDFKNRLANYEKVYEPVDE 518 (707)
Q Consensus 486 ~pd~s~~~d~e~a~~df~~Ri~~y~~~yEpl~e 518 (707)
.+. +.+.+++.+..+.+.|++..+|-.+
T Consensus 152 ----rG~-~~~~~~~~~~~~~~~~~~~I~p~~~ 179 (194)
T PF00485_consen 152 ----RGR-SPEEVIAQYERVRPGYERYIEPQKE 179 (194)
T ss_dssp ----S-S--HHHHHHHHHTHHHHHHHCTGGGGG
T ss_pred ----cCC-cceeEEEEeecCChhhhhheecccc
Confidence 234 7889999999888999888887643
No 156
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.88 E-value=9e-05 Score=71.12 Aligned_cols=128 Identities=20% Similarity=0.302 Sum_probs=70.9
Q ss_pred EEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHH---HHH-------HHHHHHHHHH
Q 005233 356 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGM---EAR-------NEVAALAMED 425 (707)
Q Consensus 356 lvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~---~~~-------~~vA~~~l~d 425 (707)
+.|-|||||||+|+.|+++++. ..++.++.-|..... .++.+. ..+ .+++..++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~-----~~is~~~llr~~~~~---------~s~~g~~i~~~l~~g~~vp~~~v~~ll~- 65 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL-----VHISVGDLLREEIKS---------DSELGKQIQEYLDNGELVPDELVIELLK- 65 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS-----EEEEHHHHHHHHHHT---------TSHHHHHHHHHHHTTSS--HHHHHHHHH-
T ss_pred CcCCCCCChHHHHHHHHHhcCc-----ceechHHHHHHHHhh---------hhHHHHHHHHHHHhhccchHHHHHHHHH-
Confidence 5799999999999999998643 356666653322211 111111 111 012212221
Q ss_pred HHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 005233 426 MISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (707)
Q Consensus 426 ~~~~L~--~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~d 501 (707)
..+. ......|+|+--.+.++-+.+.++ ...+..+ .+|.+.|++ +.+.+|+.. + +. +.
T Consensus 66 --~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~-~~~~~R~~~---------d--~~----~~ 127 (151)
T PF00406_consen 66 --ERLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPD-ETLIERLSQ---------D--NE----EV 127 (151)
T ss_dssp --HHHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--H-HHHHHHHHT---------G--SH----HH
T ss_pred --HHHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccch-hhhhhhccc---------C--CH----HH
Confidence 1222 235778899988888776666664 3334433 677778864 566666644 1 12 33
Q ss_pred HHHHHHhhhhhccCC
Q 005233 502 FKNRLANYEKVYEPV 516 (707)
Q Consensus 502 f~~Ri~~y~~~yEpl 516 (707)
+.+|+..|++.-+|+
T Consensus 128 i~~Rl~~y~~~~~~i 142 (151)
T PF00406_consen 128 IKKRLEEYRENTEPI 142 (151)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888887665554
No 157
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.88 E-value=0.00018 Score=72.83 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=33.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
++.+|.++|.+||||||+|+.|++.+. +..+.+++.|+|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcc
Confidence 688999999999999999999999873 345666777776
No 158
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.84 E-value=4.9e-05 Score=80.25 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=37.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
+|.++|.+||||||++++|.+.|+..++++.++..|+|.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5889999999999999999999998898999999999876
No 159
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.76 E-value=0.00021 Score=73.34 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=82.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCC----CCCCCCCCCCHHHHHHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVN----QSADFFRADNPEGMEARNEVAALAME 424 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~----~~~~f~~~~~e~~~~~~~~vA~~~l~ 424 (707)
.++++|-+.|-+||||||+|+.|...|+-. ..-+++.|+|=+-..... ....| .....-...++.+-...+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~-d~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINY-DHPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcCc-cChhhhcHHHHHHHHHHHHc
Confidence 456899999999999999999999998733 555666677733111100 00111 10011012222222111111
Q ss_pred ------HHHHHH----------hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCC
Q 005233 425 ------DMISWM----------HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPD 488 (707)
Q Consensus 425 ------d~~~~L----------~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd 488 (707)
=.++|- .....+||+++...... +.++++.. + -+||+ ++.+..+.||+.+....
T Consensus 83 g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~~d--~-kIfvd--td~D~RliRri~RD~~~--- 152 (218)
T COG0572 83 GKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDLMD--L-KIFVD--TDADVRLIRRIKRDVQE--- 152 (218)
T ss_pred CCcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhhcC--E-EEEEe--CCccHHHHHHHHHHHHH---
Confidence 000110 01256777777776654 33444432 2 24665 45556777777665432
Q ss_pred CCCCCChHHHHHHHHH-HHHhhhhhccCCC
Q 005233 489 YAEEPDFEAGLQDFKN-RLANYEKVYEPVD 517 (707)
Q Consensus 489 ~s~~~d~e~a~~df~~-Ri~~y~~~yEpl~ 517 (707)
.+. +++..++.|.. .-+.|++.-||..
T Consensus 153 -rg~-~~e~vi~qy~~~vkp~~~~fIeptk 180 (218)
T COG0572 153 -RGR-DLESVIEQYVKTVRPMYEQFIEPTK 180 (218)
T ss_pred -hCC-CHHHHHHHHHHhhChhhhhccCccc
Confidence 244 78888888874 4466666666554
No 160
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.75 E-value=0.00035 Score=69.57 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
+.+|+++|.+||||+|+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3589999999999999999998875
No 161
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.74 E-value=0.00035 Score=69.38 Aligned_cols=135 Identities=20% Similarity=0.258 Sum_probs=73.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCC-CCCCCHHHHHHHHH------------
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADF-FRADNPEGMEARNE------------ 417 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f-~~~~~e~~~~~~~~------------ 417 (707)
+.+|||+|-+|||||||++.|.+.+............ |..+.+--...+| |- +.+.+..+.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TT---R~~r~~E~~g~~y~fv--s~~~f~~~~~~~~fie~~~~~g 76 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTT---RPPRPGEVDGVDYHFV--SKEEFERMIKAGEFIEYGEYDG 76 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEES---S-GGTTS-TTTSEEE----HHHHHHHHHTTHEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecc---cCCcccccCCcceEEE--eechhhhhhccccEEEEeeecc
Confidence 4578999999999999999999886532211111212 3322221111111 21 3333332211
Q ss_pred --------HHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCC
Q 005233 418 --------VAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDY 489 (707)
Q Consensus 418 --------vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~ 489 (707)
.+..++ +.|.++|+|.. .+-+..+.+.+...++|-+.++..+.++++++++..
T Consensus 77 ~~YGt~~~~i~~~~--------~~gk~~il~~~------~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~----- 137 (183)
T PF00625_consen 77 NYYGTSKSAIDKVL--------EEGKHCILDVD------PEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD----- 137 (183)
T ss_dssp EEEEEEHHHHHHHH--------HTTTEEEEEET------HHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH-----
T ss_pred hhhhhccchhhHhh--------hcCCcEEEEcc------HHHHHHHHhcccCceEEEEEccchHHHHHHHhcccc-----
Confidence 122222 26888999865 234555544466666666677888999999876532
Q ss_pred CCCCChHHHHHHHHHHHHhhhhhccCC
Q 005233 490 AEEPDFEAGLQDFKNRLANYEKVYEPV 516 (707)
Q Consensus 490 s~~~d~e~a~~df~~Ri~~y~~~yEpl 516 (707)
+ ..+...+|+...++.|+-.
T Consensus 138 ----~---~~~~i~~r~~~~~~~~~~~ 157 (183)
T PF00625_consen 138 ----E---SEEEIEERLERAEKEFEHY 157 (183)
T ss_dssp ----C---HHHHHHHHHHHHHHHHGGG
T ss_pred ----c---cHHHHHHHHHHHHHHHhHh
Confidence 1 1233455666665555543
No 162
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.74 E-value=0.00023 Score=80.02 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=39.6
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
.+|.+|+|+|++|+||||++.+||.++...|.++-+++.|.||
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4588999999999999999999999998888899999999887
No 163
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.00039 Score=77.34 Aligned_cols=45 Identities=36% Similarity=0.531 Sum_probs=40.8
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
...|.+|+|+||-||||||.|.+||+||...+.++-++..|-||=
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 346899999999999999999999999999999999998888864
No 164
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.70 E-value=0.00096 Score=66.43 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+|++.|.+||||||+++.|+++++.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~ 25 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGY 25 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998653
No 165
>PLN02348 phosphoribulokinase
Probab=97.68 E-value=0.00021 Score=79.11 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=36.2
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcC---------------CceEEEechhh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG---------------HDTKHFNVGKY 390 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g---------------i~tdv~~~ddy 390 (707)
..+|++|-+.|-|||||||+|+.|+..|+..+ ..+.++..|+|
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence 35789999999999999999999999997532 35668888888
No 166
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.68 E-value=3.1e-05 Score=70.89 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEccCCCChHHHHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L 375 (707)
|+++|.|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 167
>PLN02924 thymidylate kinase
Probab=97.60 E-value=0.00057 Score=70.47 Aligned_cols=37 Identities=38% Similarity=0.522 Sum_probs=33.2
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
..+++|++.|.+||||||+++.|+++|...|+++..+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 3578999999999999999999999999998887655
No 168
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.58 E-value=6.6e-05 Score=81.72 Aligned_cols=103 Identities=20% Similarity=0.217 Sum_probs=69.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
..+-+|+++|+||+||||++...-..-+...++.|++ +.. +.+...+.+
T Consensus 267 ~~~eiV~~vgfp~sGks~f~a~~~~~~~y~~vn~d~l--g~~-------------------------~~C~~~~~e---- 315 (422)
T KOG2134|consen 267 GHGEIVVAVGFPGSGKSTFAAKRVVPNGYKIVNADTL--GTP-------------------------QNCLLANAE---- 315 (422)
T ss_pred CCCcEEEEEecCCCCcchhhhhhcccCceeEeecccC--CCc-------------------------hhhHHHHHH----
Confidence 3447999999999999999866554323333333333 111 122222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
+|. .|..||+|.||+..+.|.++... .+.++.+.++|..|. .+..+.|+..|..
T Consensus 316 ~l~-~~~sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s-~eq~~hn~~fR~~ 370 (422)
T KOG2134|consen 316 ALK-HGKSVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSS-VEQAQHNNRFREL 370 (422)
T ss_pred Hhh-cccEEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccH-HHhhhccccchhh
Confidence 222 68889999999999999999999 777888999998886 4555666655543
No 169
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.00034 Score=72.75 Aligned_cols=130 Identities=17% Similarity=0.218 Sum_probs=77.4
Q ss_pred CCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCC-----C-----------CCCCCCCC-
Q 005233 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ-----S-----------ADFFRADN- 408 (707)
Q Consensus 346 ~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~-----~-----------~~f~~~~~- 408 (707)
++...|++|++.|-||.||||+|..||++|+ ++. +++.|-.|..+.+.-. . .......+
T Consensus 84 r~~~~p~IILIGGasGVGkStIA~ElA~rLg---I~~-visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~p 159 (299)
T COG2074 84 RKMKRPLIILIGGASGVGKSTIAGELARRLG---IRS-VISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENP 159 (299)
T ss_pred hccCCCeEEEecCCCCCChhHHHHHHHHHcC---Cce-eecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcc
Confidence 3455799999999999999999999999965 332 2334444665433111 0 00000111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH-HHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 409 -PEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKR-RNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 409 -e~~~~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~-R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
-.+|....+.+.-.++.++.-..++|..+|+.++..-+.. +.... +..++..-+...|++++++|+..|.+
T Consensus 160 iiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~-----~~n~~~~~l~i~dee~Hr~RF~~R~~ 232 (299)
T COG2074 160 IIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEAL-----GNNVFMFMLYIADEELHRERFYDRIR 232 (299)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhh-----ccceEEEEEEeCCHHHHHHHHHHHHH
Confidence 1223333333333333333333448999999999988764 22222 12233444566899999999998865
No 170
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.55 E-value=0.0013 Score=67.37 Aligned_cols=28 Identities=29% Similarity=0.147 Sum_probs=24.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCC
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi 380 (707)
+|++-|.-||||||+++.|+++|.+.++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 5889999999999999999999876433
No 171
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.55 E-value=0.0031 Score=65.07 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=35.1
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEE-Eechhh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH-FNVGKY 390 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv-~~~ddy 390 (707)
..++.+|.+.|.+||||||+++.|+..+...+....+ ++.|+|
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 4578999999999999999999999999876655555 555554
No 172
>PRK10867 signal recognition particle protein; Provisional
Probab=97.54 E-value=0.00053 Score=77.39 Aligned_cols=44 Identities=34% Similarity=0.458 Sum_probs=39.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEechhhHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRR 392 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~ddyRr 392 (707)
.+|.+|+|+|++|+||||++..||.+|... |.++-+++.|.||-
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 458999999999999999999999999877 88999999988875
No 173
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.53 E-value=0.00032 Score=70.87 Aligned_cols=34 Identities=24% Similarity=0.104 Sum_probs=27.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
++|.++|.+||||||+|+.|++.++...+++|.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~ 35 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIY 35 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHH
Confidence 3799999999999999999998866655444433
No 174
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.52 E-value=0.00026 Score=71.24 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=26.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
.+|.++|.+||||||+++.|++ ++.. +++.|++-+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~-----~i~~D~~~~ 37 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAP-----VIDADAIAH 37 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCE-----EEEecHHHH
Confidence 5799999999999999999997 5544 455554443
No 175
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.52 E-value=0.00048 Score=77.85 Aligned_cols=44 Identities=41% Similarity=0.555 Sum_probs=39.8
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
.+|.+|+|+|++|+||||++..|+.+|...+.++-+++.|.||-
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 46899999999999999999999999998888999998888765
No 176
>PTZ00301 uridine kinase; Provisional
Probab=97.51 E-value=0.0013 Score=67.38 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=80.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh-cCCc-eEEEechhhHHHhhCCCC-CCCCCCCCCHHH--HHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW-LGHD-TKHFNVGKYRRLKHGVNQ-SADFFRADNPEG--MEARNEVAALAMED 425 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~-tdv~~~ddyRr~~~g~~~-~~~f~~~~~e~~--~~~~~~vA~~~l~d 425 (707)
.++|-+.|-|||||||+|+.|.+.|.. .+-. +.++..|+|-+-...... ..+..+-+...+ ...+.+....+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 478999999999999999999988753 2333 346777777331111100 011222222222 22222222211110
Q ss_pred -H-----HHHHh----------cCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCC
Q 005233 426 -M-----ISWMH----------EGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDY 489 (707)
Q Consensus 426 -~-----~~~L~----------~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~ 489 (707)
. ++|-. ....++|+++.+.... ..++.+. .+ .+||+ |+.+..+.||+++....
T Consensus 83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~l~--D~-~ifvd--~~~d~~~~Rr~~Rd~~~---- 151 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRNEM--DC-LIFVD--TPLDICLIRRAKRDMRE---- 151 (210)
T ss_pred CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHHhC--CE-EEEEe--CChhHHHHHHHhhhHHh----
Confidence 0 01100 1246888888887311 2333432 22 25666 55555666676555332
Q ss_pred CCCCChHHHHHHHHHHH-HhhhhhccCCCC
Q 005233 490 AEEPDFEAGLQDFKNRL-ANYEKVYEPVDE 518 (707)
Q Consensus 490 s~~~d~e~a~~df~~Ri-~~y~~~yEpl~e 518 (707)
.+. +.+.+++.+.++. ..+.+.-+|...
T Consensus 152 rG~-~~e~v~~~~~~~v~~~~~~~I~p~k~ 180 (210)
T PTZ00301 152 RGR-TFESVIEQYEATVRPMYYAYVEPSKV 180 (210)
T ss_pred cCC-CHHHHHHHHHHhhcccHHHHcCcccc
Confidence 234 6788877777753 444444455543
No 177
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.002 Score=63.02 Aligned_cols=148 Identities=11% Similarity=0.124 Sum_probs=97.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNP-EGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e-~~~~~~~~vA~~~l~d~~~~ 429 (707)
|.+-+|.|-.||||||+-..+...+. -...++|.|..-. ...+ .+.. ..++ .++ ...+.+.+
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~---~~~~~VN~D~iA~---~i~p------~~p~~~~i~----A~r-~ai~~i~~ 64 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL---PGIVFVNADEIAA---QISP------DNPTSAAIQ----AAR-VAIDRIAR 64 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc---CCeEEECHHHHhh---hcCC------CCchHHHHH----HHH-HHHHHHHH
Confidence 67889999999999998765543322 2455677765522 1111 1211 1111 111 22223445
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y 509 (707)
+.+.|...++..|...+.-++.++..+..|+-++...+..+..++-.+|++.|..+.. .+. -.+...++|.+++++.
T Consensus 65 ~I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GG--H~I-pED~Ir~RY~rsle~l 141 (187)
T COG4185 65 LIDLGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGG--HDI-PEDKIRRRYRRSLELL 141 (187)
T ss_pred HHHcCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCC--CCC-cHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999988899777666667777899999998876322 232 2344567777777777
Q ss_pred hhhccCCCC
Q 005233 510 EKVYEPVDE 518 (707)
Q Consensus 510 ~~~yEpl~e 518 (707)
...++-+++
T Consensus 142 ~~~l~l~dr 150 (187)
T COG4185 142 AQALTLADR 150 (187)
T ss_pred HHHHhhcce
Confidence 777666664
No 178
>PRK07933 thymidylate kinase; Validated
Probab=97.50 E-value=0.0084 Score=61.46 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=30.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
++|++.|.-||||||+++.|+++|...|+++.+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4799999999999999999999999988776654
No 179
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.48 E-value=0.00086 Score=71.33 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=38.3
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
.++.+|+|+|.+|+||||++..|+.++...+.++-+++.|-||.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 45789999999999999999999999988888888888877654
No 180
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.46 E-value=0.00082 Score=68.11 Aligned_cols=42 Identities=36% Similarity=0.418 Sum_probs=36.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
|.+|+|+|.+|+||||.+.+||.++...+.++-+++.|.||-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 679999999999999999999999987788888898888863
No 181
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.44 E-value=0.0023 Score=64.16 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=30.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
+|.++|.+||||||+|+.|...+ .+..+.+++.|+|-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 57899999999999999999987 34566778777764
No 182
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00066 Score=74.25 Aligned_cols=106 Identities=22% Similarity=0.315 Sum_probs=71.6
Q ss_pred cCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh-----hC-CCCCCCCCCCCCHHHHHHHHH
Q 005233 344 LGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK-----HG-VNQSADFFRADNPEGMEARNE 417 (707)
Q Consensus 344 ~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~-----~g-~~~~~~f~~~~~e~~~~~~~~ 417 (707)
+.+...+|-||+|+||-|+||||.+.+||.|+...|+++-++-+|.||--. .. ....-.||..+.+.-. .+
T Consensus 94 ~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dp---v~ 170 (483)
T KOG0780|consen 94 LQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADP---VK 170 (483)
T ss_pred cccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccch---HH
Confidence 345567899999999999999999999999999999999888888776421 11 1112334444333211 12
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Q 005233 418 VAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM 455 (707)
Q Consensus 418 vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l 455 (707)
+|.+ -+..|=+++-.++|+|...-....-..+.++
T Consensus 171 ia~e---gv~~fKke~fdvIIvDTSGRh~qe~sLfeEM 205 (483)
T KOG0780|consen 171 IASE---GVDRFKKENFDVIIVDTSGRHKQEASLFEEM 205 (483)
T ss_pred HHHH---HHHHHHhcCCcEEEEeCCCchhhhHHHHHHH
Confidence 3333 3334455667788888887777777777776
No 183
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.0025 Score=63.90 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=63.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC-CCCCCCCCHHHHHHH-------------
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-ADFFRADNPEGMEAR------------- 415 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~-~~f~~~~~e~~~~~~------------- 415 (707)
++++|+++|.+|+|||||.++|-+.. ...+..- .. -|..+.|--.. ..||- ..++.-+.+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS-~T---TR~pR~gEv~G~dY~Fv-s~~EF~~~i~~~~fLE~a~~~g 76 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVS-AT---TRKPRPGEVDGVDYFFV-TEEEFEELIERDEFLEWAEYHG 76 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEE-ec---cCCCCCCCcCCceeEeC-CHHHHHHHHhcCCcEEEEEEcC
Confidence 57899999999999999999998775 2221111 11 13322221111 11221 111111111
Q ss_pred ------HHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 416 ------NEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 416 ------~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
..-+..++. .|..||+|-.. +-++.+ .+.. ..++|-..|+..+.+++|+++|.+
T Consensus 77 nyYGT~~~~ve~~~~--------~G~~vildId~------qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgt 137 (191)
T COG0194 77 NYYGTSREPVEQALA--------EGKDVILDIDV------QGALQVKKKMP-NAVSIFILPPSLEELERRLKGRGT 137 (191)
T ss_pred CcccCcHHHHHHHHh--------cCCeEEEEEeh------HHHHHHHHhCC-CeEEEEEcCCCHHHHHHHHHccCC
Confidence 112233333 68999997654 334444 2221 455555578899999999998865
No 184
>PRK13974 thymidylate kinase; Provisional
Probab=97.40 E-value=0.0037 Score=63.80 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=26.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
+.+|++.|.+||||||+++.|+++|...|
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g 31 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSG 31 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999997654
No 185
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.0045 Score=61.89 Aligned_cols=144 Identities=16% Similarity=0.289 Sum_probs=80.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHH----------HH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN----------EV 418 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~----------~v 418 (707)
..+.+|++.|=|||||=|.+.+|++.++|.. ++.||.=|..... +.++....... ++
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ftH-----lSaGdLLR~E~~~--------~gse~g~~I~~~i~~G~iVP~ei 72 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFTH-----LSAGDLLRAEIAS--------AGSERGALIKEIIKNGDLVPVEI 72 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcCcee-----ecHHHHHHHHHcc--------ccChHHHHHHHHHHcCCcCcHHH
Confidence 3567999999999999999999999977654 6667664323221 11222211111 23
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHc--CCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChH
Q 005233 419 AALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAE--GNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFE 496 (707)
Q Consensus 419 A~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~--~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e 496 (707)
...+|++...-..+.+. .++|+---..+++..|..... ..+ ++|+ .|+.+.++ +|+..|.+.+. -+|.
T Consensus 73 ~~~LL~~am~~~~~~~~-fLIDGyPR~~~q~~~fe~~i~~~~~f-vl~f--dc~ee~~l-~Rll~R~q~~~-R~DD---- 142 (195)
T KOG3079|consen 73 TLSLLEEAMRSSGDSNG-FLIDGYPRNVDQLVEFERKIQGDPDF-VLFF--DCPEETML-KRLLHRGQSNS-RSDD---- 142 (195)
T ss_pred HHHHHHHHHHhcCCCCe-EEecCCCCChHHHHHHHHHhcCCCCE-EEEE--eCCHHHHH-HHHHhhcccCC-CCCC----
Confidence 33344433322222222 777887777778877776633 233 4455 46544454 45545544322 2222
Q ss_pred HHHHHHHHHHHhhhhhccCC
Q 005233 497 AGLQDFKNRLANYEKVYEPV 516 (707)
Q Consensus 497 ~a~~df~~Ri~~y~~~yEpl 516 (707)
-.+-.++|+..|.+.=.|+
T Consensus 143 -n~esikkR~et~~~~t~Pv 161 (195)
T KOG3079|consen 143 -NEESIKKRLETYNKSTLPV 161 (195)
T ss_pred -chHHHHHHHHHHHHcchHH
Confidence 2234577888886665554
No 186
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.38 E-value=0.00028 Score=80.99 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=29.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
++++|++.|.+||||||+|+.|+++|++..++++-+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~ 318 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM 318 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence 467999999999999999999999987655554443
No 187
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.35 E-value=0.0012 Score=74.56 Aligned_cols=44 Identities=34% Similarity=0.472 Sum_probs=39.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRR 392 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~ddyRr 392 (707)
.+|.+|+|+|++|+||||+|..||.++. ..|.++-+++.|.||-
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 4689999999999999999999999986 4688899999988875
No 188
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.34 E-value=0.00059 Score=68.04 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=26.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
+|.++|-+||||||+|+.|++..+.. +++.|++-+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~-----~i~~D~~~~ 35 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFP-----VIDADKIAH 35 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCe-----EEeCCHHHH
Confidence 48899999999999999999874343 455555543
No 189
>PRK14974 cell division protein FtsY; Provisional
Probab=97.33 E-value=0.0013 Score=72.13 Aligned_cols=44 Identities=34% Similarity=0.437 Sum_probs=38.3
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
.+|.+|+|+|.||+||||++.+|+.+|...+.++-+++.|-||.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 35889999999999999999999999988888887787776764
No 190
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.32 E-value=0.021 Score=56.55 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=24.1
Q ss_pred EEccCCCChHHHHHHHHHHHhhcCCc
Q 005233 356 LVGLPARGKTFTAAKLTRYLRWLGHD 381 (707)
Q Consensus 356 lvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (707)
+=|+.||||||+++.|+++|...+++
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~ 26 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK 26 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 35999999999999999999999987
No 191
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.29 E-value=0.0043 Score=63.96 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh--cCCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~--~gi~tdv~~~ddy 390 (707)
+|-+.|-+||||||+|+.|+..|.. .+.++.+++.|+|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 4678999999999999999999864 3456667777766
No 192
>PRK13976 thymidylate kinase; Provisional
Probab=97.28 E-value=0.0092 Score=61.09 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=25.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc-C
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWL-G 379 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~-g 379 (707)
++|++-|+-||||||+++.|+++|... |
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g 29 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYG 29 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 479999999999999999999999875 5
No 193
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.27 E-value=0.0059 Score=61.85 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=30.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
.+.+|.++|.+||||||+++.|+..+.. ..+.+++.|+|
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 4679999999999999999999988764 23445656655
No 194
>PLN02842 nucleotide kinase
Probab=97.27 E-value=0.0031 Score=72.20 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.1
Q ss_pred EEEccCCCChHHHHHHHHHHHhhcCC
Q 005233 355 VLVGLPARGKTFTAAKLTRYLRWLGH 380 (707)
Q Consensus 355 vlvGLPGSGKSTlAr~Lar~L~~~gi 380 (707)
++.|.|||||||+|+.|+++++...+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hI 26 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHI 26 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEE
Confidence 47899999999999999999765443
No 195
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.26 E-value=0.0037 Score=61.19 Aligned_cols=40 Identities=45% Similarity=0.580 Sum_probs=35.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
+++++|.||+||||+++.|+..+...+.++-+++.|.+|.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 7899999999999999999999888888888888876653
No 196
>PLN02165 adenylate isopentenyltransferase
Probab=97.25 E-value=0.0024 Score=69.70 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=28.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
..+.+|+++|.+|||||+||..|++.+++..+++|
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 34558999999999999999999999876544444
No 197
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.017 Score=59.18 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=32.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
++++|++=|.=||||||.++.|.++|...|+++...
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t 37 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT 37 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999999999999866554
No 198
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.19 E-value=0.00046 Score=57.96 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=25.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+|+++|.|||||||+|+.|++.| .+.+..++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i 31 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVL 31 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEE
Confidence 47889999999999999999997 34455544
No 199
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.0039 Score=61.51 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=30.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+++++++|.||+||||+.+.+.+.| ++..++|-|++
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l----~~~~ivNyG~~ 39 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL----VKHKIVNYGDL 39 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH----hhceeeeHhHH
Confidence 6899999999999999999999887 56666777766
No 200
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.18 E-value=0.0023 Score=62.40 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=79.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEechhhHHHhhC--CCCCCCCCCC-----CCHH----HHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRRLKHG--VNQSADFFRA-----DNPE----GMEARN 416 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~ddyRr~~~g--~~~~~~f~~~-----~~e~----~~~~~~ 416 (707)
+..+|+|-|-|-+|||.||.+++.-.. |..+..|.| =..+.. .....+|.-+ +..+ .+.-+.
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f-----~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~ 96 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLF-----WEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPIL 96 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHH-----HHhCCHHhhccccccccccccccCCceeeEeechhHH
Confidence 456999999999999999999997663 665555543 111100 0011111111 1111 112223
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCC
Q 005233 417 EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAE 491 (707)
Q Consensus 417 ~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~ 491 (707)
+.+..-..-.+.-+.++|..+|.|+.-.+++..-....+. .++++.++=+.|++++..++++++. -..|.|..
T Consensus 97 e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l-~g~~v~~VGV~~p~E~~~~Re~rr~-dR~pG~~r 169 (205)
T COG3896 97 ELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVL-EGCRVWMVGVHVPDEEGARRELRRG-DRHPGWNR 169 (205)
T ss_pred HHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHH-hCCceEEEEeeccHHHHHHHHhhcC-CcCcchhh
Confidence 3333333333444566899999999998876544333332 3789999999999877777776633 23455543
No 201
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.17 E-value=0.0028 Score=68.97 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=37.3
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
.++.+|.++|.+|+||||++..|+.++...+.++-+++.|-||
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 3578999999999999999999999998778888888777665
No 202
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.13 E-value=0.00094 Score=66.25 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=25.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
+|.++|.|||||||+|+.|++ ++.. +++.|++-+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~-----~i~~D~~~~ 34 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIP-----VIDADKIAH 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCC-----EEecCHHHH
Confidence 488999999999999999998 4433 355555544
No 203
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.11 E-value=0.0012 Score=66.51 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=27.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+|.++|.|||||||+|+.|++.+. .+.+++.|+|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 578999999999999999999863 2455666665
No 204
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.09 E-value=0.0032 Score=64.17 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=27.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
.++|-++|.|||||||+|+.+++ ++... ++.|+.-|
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~v-----idaD~v~r 37 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPV-----IDADDVAR 37 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeE-----EEccHHHH
Confidence 46899999999999999999998 55443 55555543
No 205
>PRK07429 phosphoribulokinase; Provisional
Probab=97.09 E-value=0.0077 Score=65.82 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=32.3
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
..++++|-++|-+||||||+++.|++.|+... ..++..|+|
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~--~~vi~~Dd~ 45 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEEL--VTVICTDDY 45 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCc--eEEEEeccc
Confidence 35789999999999999999999999877443 234555665
No 206
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.09 E-value=0.0028 Score=65.49 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=29.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+++|.+.|.|||||||+|+.|+++|+...+++..+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~ 38 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAM 38 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchh
Confidence 57999999999999999999999988666555543
No 207
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=97.04 E-value=0.00095 Score=68.97 Aligned_cols=57 Identities=26% Similarity=0.312 Sum_probs=47.2
Q ss_pred eEEEeccccccccCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCC--------CCCEEEEcCcHHHHHHHHHh
Q 005233 561 PILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSE--------RAASIWTSTLQRTILTASPI 626 (707)
Q Consensus 561 ~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~--------~~d~I~TSPl~RAiQTA~~i 626 (707)
-++++|||+..- ..||+.|++|+..+|++|+++.... ..-.|++|+..||+|||+.+
T Consensus 5 v~~~~RHg~r~p---------~~LT~~G~~q~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~ 69 (242)
T cd07061 5 VQVLSRHGDRYP---------GELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAF 69 (242)
T ss_pred EEEEEecCCCCc---------hhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcHHHHHHHHH
Confidence 467899999842 3599999999999999999875422 23378999999999999998
No 208
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.03 E-value=0.0011 Score=67.79 Aligned_cols=36 Identities=19% Similarity=0.090 Sum_probs=29.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
.|+.|.++|-+||||||+++.|++.++...+++|.+
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i 40 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTI 40 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHH
Confidence 478999999999999999999998766555555544
No 209
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.0094 Score=60.91 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=24.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
..+|++-|.=|+||||||+.|+++|+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999977
No 210
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.00 E-value=0.004 Score=57.06 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=26.9
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
|+++|.||+||||+|+.|+++++ .....++.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---ccccccccccc
Confidence 68999999999999999999964 55555655333
No 211
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.94 E-value=0.0014 Score=62.43 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+|+++|.+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478899999999999999998754
No 212
>PRK09169 hypothetical protein; Validated
Probab=96.91 E-value=0.0021 Score=82.61 Aligned_cols=139 Identities=13% Similarity=-0.043 Sum_probs=83.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
...|+|+|++|+|||||++.|+..|++..+++|.... ...+.. ...+|.... .++ +.+...+.+++
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIe-----ks~Grk-I~rIFa~eG--~FR---e~Eaa~V~Dll--- 2175 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIA-----KKIGKK-IARIQALRG--LSP---EQAAARVRDAL--- 2175 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHH-----HHhCCC-HHHHHHhcC--chH---HHHHHHHHHHh---
Confidence 4478999999999999999999999998887765422 111111 122233222 222 22222233222
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCCh--------HHHHHHH
Q 005233 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDF--------EAGLQDF 502 (707)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~--------e~a~~df 502 (707)
. ..+|+..........+....+.+.|+ +||+. .+.+.+.+|+..... +|..... ++ ++..+.+
T Consensus 2176 --r-~~vVLSTGGGav~~~enr~~L~~~Gl-vV~L~---an~~tl~~Rty~g~N-RPLL~~~-~~~FEiQFHT~esl~Lk 2246 (2316)
T PRK09169 2176 --R-WEVVLPAEGFGAAVEQARQALGAKGL-RVMRI---NNGFAAPDTTYAGLN-VNLRTAA-GLDFEIQFHTADSLRTK 2246 (2316)
T ss_pred --c-CCeEEeCCCCcccCHHHHHHHHHCCE-EEEEE---CCHHHHHHHhccCCC-CccccCC-CCccchhccHHHHHHHH
Confidence 1 34555555554444455555566675 55554 567888899877643 6666554 44 5666677
Q ss_pred HHHHHhhhhh
Q 005233 503 KNRLANYEKV 512 (707)
Q Consensus 503 ~~Ri~~y~~~ 512 (707)
.+|.+.|++.
T Consensus 2247 ~eRhpLYEqv 2256 (2316)
T PRK09169 2247 NKTHKLYEKL 2256 (2316)
T ss_pred HHhHHHHHHh
Confidence 7788888664
No 213
>PHA00729 NTP-binding motif containing protein
Probab=96.90 E-value=0.0063 Score=63.07 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
..-|+++|-||+||||+|.+|++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999999875
No 214
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.90 E-value=0.0046 Score=67.65 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=37.1
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
..++.+|.++|.||+||||+...|...+...+.++-+++.|.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 447899999999999999999999999998888888887654
No 215
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=96.87 E-value=0.0074 Score=61.52 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=25.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
.+++|.++|-+||||||+++.|.. ++...+++|
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D 36 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEAD 36 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence 568999999999999999999996 444333333
No 216
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.85 E-value=0.018 Score=59.30 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
+++|.+.|.+||||||+|+.|+++|+...+++.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g 34 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSG 34 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCc
Confidence 468999999999999999999999876554443
No 217
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=96.83 E-value=0.0061 Score=61.28 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=66.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCce-EEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---H
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI---S 428 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~t-dv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~---~ 428 (707)
++.+.|+|++|||++.+.|.-.-.++.++. ..+.-||++- ... +..+. .-.+...+.+.....|...+. +
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlm-daT--pSaD~---a~keqRgr~~~~iEk~ISaiqedtd 76 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLM-DAT--PSADK---AAKEQRGRFECHIEKCISAIQEDTD 76 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhh-hcC--cchhh---hHHHHhchHHHHHHHHHHHHhcccC
Confidence 688999999999999999865444443222 1233355642 111 11111 111112222333333333222 1
Q ss_pred H------------HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHH
Q 005233 429 W------------MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (707)
Q Consensus 429 ~------------L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI 479 (707)
| .+.+-++.++|..+..+..|..+.++ +.+|+.+=.|-....-.+.+++|-
T Consensus 77 wppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS 140 (291)
T KOG4622|consen 77 WPPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANS 140 (291)
T ss_pred CCchheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhcc
Confidence 1 12234688899999999999999999 777775533333333345666653
No 218
>PHA03132 thymidine kinase; Provisional
Probab=96.82 E-value=0.093 Score=61.31 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=23.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.++|++-|..|+||||+++.|++++
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999999999998
No 219
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.82 E-value=0.011 Score=68.84 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=32.6
Q ss_pred CCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 347 ~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
...++++|.+.|-+||||||+|+.|+..+. .+-+++.|+|.
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp----~vgvIsmDdy~ 101 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVISMDNYN 101 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhCC----CcEEEEEccee
Confidence 344689999999999999999999998764 24466677774
No 220
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.77 E-value=0.0021 Score=71.12 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+|.+|+++|++|||||||+.+|.+.|... +++-++
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~i 38 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYY 38 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEE
Confidence 68999999999999999999999999876 666666
No 221
>PLN02772 guanylate kinase
Probab=96.74 E-value=0.014 Score=64.91 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
...+|+++|.+|+||+||.+.|.+.+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p 160 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFP 160 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence 566999999999999999999987653
No 222
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.69 E-value=0.01 Score=55.83 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=31.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+++++|-||+||||++..++..+...+..+..++.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 47899999999999999999988776777777666433
No 223
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0088 Score=66.75 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
.+|.+|.|+|.+|+||||++..|+..|...+.++-+++.|.||
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3567899999999999999999999998788888888888776
No 224
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.67 E-value=0.0085 Score=56.66 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=40.1
Q ss_pred hhhhcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 338 AVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 338 ~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
++.+-...+.+.+|+++-|.|-||+|||++|+.||+.|-..|.++..+
T Consensus 40 ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V 87 (127)
T PF06309_consen 40 AIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV 87 (127)
T ss_pred HHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence 333344456788999999999999999999999999998888888766
No 225
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.011 Score=57.50 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=27.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
-|+++|=||+||||+|.+|++.++... ++.+++-|
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~-----i~isd~vk 43 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEY-----IEISDLVK 43 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCce-----EehhhHHh
Confidence 588999999999999999998865433 45566655
No 226
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.66 E-value=0.012 Score=62.75 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=28.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+|.++|-+||||||+++.|+..++..+ ..++..|+|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECccc
Confidence 477899999999999999998876543 345656666
No 227
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.66 E-value=0.026 Score=60.30 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=62.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
+||++||+||||||..+.|+. +++..++- . - ...+.+++..+... --..
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED-~Gy~cvDN-------l-----------------P---~~Ll~~l~~~~~~~---~~~~ 51 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALED-LGYYCVDN-------L-----------------P---PSLLPQLIELLAQS---NSKI 51 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHh-cCeeEEcC-------C-----------------c---HHHHHHHHHHHHhc---CCCC
Confidence 799999999999999888885 34432111 1 0 11222222221110 0001
Q ss_pred CCeEEEEeCCCCCH--HHHHHHHHHH--cCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 005233 433 GGQVGIFDATNSSR--KRRNMLMKMA--EGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (707)
Q Consensus 433 ~G~vVIlDAtn~~~--e~R~~l~~l~--~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (707)
..-.+++|.-+..- +--+.+.++. ...++++|+| |+++.+++|--+.| +..|.-.+. ...++++.=.+.+
T Consensus 52 ~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLd--A~d~~LirRy~eTR-R~HPL~~~~-~~le~I~~Er~~L 125 (284)
T PF03668_consen 52 EKVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLD--ASDEVLIRRYSETR-RRHPLSSDG-SLLEAIEKERELL 125 (284)
T ss_pred ceEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEE--CChHHHHHHHHhcc-CCCCCCCCC-CcHHHHHHHHHHH
Confidence 24577788877642 2234444553 3456677776 56656666555555 446765544 3334443333333
No 228
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.65 E-value=0.0046 Score=55.71 Aligned_cols=37 Identities=32% Similarity=0.303 Sum_probs=29.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+..++++|-||+||||+++.|+..+...+.....++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~ 38 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG 38 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC
Confidence 3478999999999999999999998766534444444
No 229
>PRK05439 pantothenate kinase; Provisional
Probab=96.64 E-value=0.0026 Score=68.89 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=37.2
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhh--cCCceEEEechhh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~--~gi~tdv~~~ddy 390 (707)
...|++|-++|-|||||||+|+.|+..|.. .+.++.+++.|+|
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 457899999999999999999999998864 3567888888887
No 230
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.56 E-value=0.011 Score=59.14 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=67.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC----------CCCCCCC--------------
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----------ADFFRAD-------------- 407 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~----------~~f~~~~-------------- 407 (707)
++|-++|-.||||||+++.|++ ++.. +++.|.+-+.....+.. ..++.++
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~-----vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~ 74 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFP-----VIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFS 74 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-E-----EEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTT
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCC-----EECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhc
Confidence 5799999999999999999997 4443 45555554433322211 1122221
Q ss_pred CHHHHHHHHHHHH-HHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 408 NPEGMEARNEVAA-LAMEDMISWMHEG--GQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 408 ~e~~~~~~~~vA~-~~l~d~~~~L~~~--G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
+.+..+.++.+.. ...+++..++... ...+|+|+.-..... +. .... .+++| .| ++++..+|+..|..
T Consensus 75 d~~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~---~~--~~~D-~vi~V--~a-~~e~ri~Rl~~R~~ 145 (180)
T PF01121_consen 75 DPEKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESG---LE--KLCD-EVIVV--YA-PEEIRIKRLMERDG 145 (180)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTT---GG--GGSS-EEEEE--E---HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhh---Hh--hhhc-eEEEE--EC-CHHHHHHHHHhhCC
Confidence 2223333333333 2233344455433 268888888765431 11 1111 23444 45 46777777766632
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhhh
Q 005233 485 QSPDYAEEPDFEAGLQDFKNRLANYEK 511 (707)
Q Consensus 485 ~~pd~s~~~d~e~a~~df~~Ri~~y~~ 511 (707)
. +.+++ .+|+..|..
T Consensus 146 -------~-~~~~~----~~ri~~Q~~ 160 (180)
T PF01121_consen 146 -------L-SEEEA----EARIASQMP 160 (180)
T ss_dssp -------S-THHHH----HHHHHTS--
T ss_pred -------C-cHHHH----HHHHHhCCC
Confidence 3 44444 566665543
No 231
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.54 E-value=0.021 Score=62.09 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=66.6
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
..+|.+|+|+|..|+||||...+||.+|...|.++-+--.|.+|- .+.+++.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA----------------------------aAiEQL~ 187 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA----------------------------AAIEQLE 187 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH----------------------------HHHHHHH
Confidence 457999999999999999999999999999999888777777754 1444555
Q ss_pred HHHhcCCeEEEEeCCCCCHH--HHHHHHHHHcCCceEEEEE
Q 005233 428 SWMHEGGQVGIFDATNSSRK--RRNMLMKMAEGNCKIIFLE 466 (707)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e--~R~~l~~l~~~~~~vifIE 466 (707)
.|-.+.|..||--.....+. -.+.+......++.+++++
T Consensus 188 ~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliD 228 (340)
T COG0552 188 VWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLID 228 (340)
T ss_pred HHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 66666777777644444443 2334444455688888876
No 232
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.50 E-value=0.029 Score=56.92 Aligned_cols=116 Identities=13% Similarity=0.129 Sum_probs=63.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC--------------------------CCCCC
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--------------------------ADFFR 405 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~--------------------------~~f~~ 405 (707)
++|-++|--||||||+++.+. .++...+++|++ -|....++.+ .-+|.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~v-----aR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~ 75 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVV-----AREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS 75 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHH-----HHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence 477899999999999999998 445444444443 3322221111 11222
Q ss_pred CC-CHHHHHH--HHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005233 406 AD-NPEGMEA--RNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (707)
Q Consensus 406 ~~-~e~~~~~--~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r 482 (707)
+. ....... .-.+..+.+.++..++..+-..+|+|..- +++..-..+-...+-++|+ ++.--+|+-+|
T Consensus 76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPL--------LFE~~~~~~~~~tvvV~cd-~~~Ql~Rl~~R 146 (225)
T KOG3220|consen 76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPL--------LFEAKLLKICHKTVVVTCD-EELQLERLVER 146 (225)
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechH--------HHHHhHHhheeeEEEEEEC-cHHHHHHHHHh
Confidence 11 1111111 12467778888888888888899998743 4444111111224456786 45455555444
No 233
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.014 Score=65.70 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=36.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH-hhcCCceEEEechhhHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L-~~~gi~tdv~~~ddyRr 392 (707)
++.+|+++|.+|+||||++.+|+..+ ...|.++-+++.|.||-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 46799999999999999999999765 45677888888888875
No 234
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.42 E-value=0.0046 Score=69.22 Aligned_cols=30 Identities=33% Similarity=0.300 Sum_probs=24.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
.|.++|-+||||||+|+.|++ ++...+++|
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD 32 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDAD 32 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehH
Confidence 589999999999999999997 554444444
No 235
>PLN02840 tRNA dimethylallyltransferase
Probab=96.41 E-value=0.0054 Score=68.90 Aligned_cols=92 Identities=21% Similarity=0.211 Sum_probs=52.2
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC------------CCCCCCCCHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS------------ADFFRADNPEGMEARN 416 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~------------~~f~~~~~e~~~~~~~ 416 (707)
..+.+|+++|.+||||||+|..|++.++...++.|-+ .-||.+-.+.... .++-+...+-.+....
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~--qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~ 96 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV--QVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF 96 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc--ceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence 4566899999999999999999999987544444432 1134333222111 1122222222344444
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Q 005233 417 EVAALAMEDMISWMHEGGQVGIFDATNSS 445 (707)
Q Consensus 417 ~vA~~~l~d~~~~L~~~G~vVIlDAtn~~ 445 (707)
+.|..+++++ +..+..++|+-+|...
T Consensus 97 ~~A~~~I~~i---~~rgkiPIvVGGTGlY 122 (421)
T PLN02840 97 DDARRATQDI---LNRGRVPIVAGGTGLY 122 (421)
T ss_pred HHHHHHHHHH---HhcCCCEEEEcCccHH
Confidence 5555555533 3344557777777744
No 236
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.37 E-value=0.014 Score=59.09 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=24.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
+|.++|-+||||||+++.|++. + ..+++.|+.-+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~-g-----~~~i~~D~i~~ 34 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL-G-----AFGISADRLAK 34 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC-C-----CEEEecchHHH
Confidence 5789999999999999999753 3 33455554433
No 237
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.019 Score=57.04 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
++|+++|=||.||||+|++|+ .|++
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCC
Confidence 379999999999999999999 6444
No 238
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.02 Score=63.76 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=38.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
++.+|+++|..|+||||++..|+.++...+.++-+++.|.||-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 5779999999999999999999998877788888899988864
No 239
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.019 Score=56.55 Aligned_cols=110 Identities=25% Similarity=0.302 Sum_probs=61.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH--hhC-----CC-CC------CCCCCCC-CHH--HHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL--KHG-----VN-QS------ADFFRAD-NPE--GME 413 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~--~~g-----~~-~~------~~f~~~~-~e~--~~~ 413 (707)
++=|.++|.||+||||++.+|+.+|...|++.-=|-..+.|+- +.| .. .. .++...- ..- ..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHH
Confidence 4568999999999999999999999877655443333333431 011 00 00 1110000 000 123
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCCCC----CHHHHHHHHHHHcCCceEEE
Q 005233 414 ARNEVAALAMEDMISWMHEGGQVGIFDATNS----SRKRRNMLMKMAEGNCKIIF 464 (707)
Q Consensus 414 ~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~----~~e~R~~l~~l~~~~~~vif 464 (707)
.+++++..+++.+. +.-.++|+|-..+ .+..++.+.+..+.+-++++
T Consensus 85 ~le~i~~~al~rA~----~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kplia 135 (179)
T COG1618 85 GLEEIAIPALRRAL----EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIA 135 (179)
T ss_pred HHHHHhHHHHHHHh----hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEE
Confidence 34444444444222 1357999999866 45667777777655555433
No 240
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.27 E-value=0.036 Score=57.50 Aligned_cols=116 Identities=16% Similarity=0.297 Sum_probs=69.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHH----H----------H
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEA----R----------N 416 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~----~----------~ 416 (707)
++.-+++|.|||||||.+..+.+.|...|.++.++|.|---. ...|--..+....-. + .
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd-------~~~Y~~~v~I~elit~edvm~~~~LGPNg~l 74 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAND-------NLPYECAVDIRELITVEDVMEELGLGPNGAL 74 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCccc-------CCCCCCcccHHHHccHHHHHHHhCCCCchhH
Confidence 345688999999999999999999999999999998752211 001100111111000 0 1
Q ss_pred HHHHHHHHHHHHHHhc-----CCeEEEEeCCCC------CHHHHHHHHHHHcCCceEEEEEE----EeCCHH
Q 005233 417 EVAALAMEDMISWMHE-----GGQVGIFDATNS------SRKRRNMLMKMAEGNCKIIFLET----ICNDRD 473 (707)
Q Consensus 417 ~vA~~~l~d~~~~L~~-----~G~vVIlDAtn~------~~e~R~~l~~l~~~~~~vifIE~----~c~d~e 473 (707)
..+.+.++.=++||.. .+.=+|+|...- .-.-+..++.+.+.+++++-+.. .|+++.
T Consensus 75 ~yc~E~l~~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~ 146 (290)
T KOG1533|consen 75 KYCMEYLEANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPS 146 (290)
T ss_pred HHHHHHHHhhhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChH
Confidence 2334444444566642 367788888642 22345666677668887765554 555543
No 241
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=96.23 E-value=0.044 Score=58.20 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=72.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRAD-NPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~-~e~~~~~~~~vA~~~l~d~~ 427 (707)
..|+||||-|+-||||..+-+.|.+.|.-.|+++..+.. +. .+...-.+-..-+.
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~------------------Pt~eE~~~p~lWRfw~~------ 109 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKA------------------PSAEELDHDFLWRIHKA------ 109 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCC------------------CCHHHHcCchHHHHHHh------
Confidence 469999999999999999999999998888877765521 11 11111111111111
Q ss_pred HHHhcCCeEEEEeCCCCCHH-------------HHHHHHH---H----HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCC
Q 005233 428 SWMHEGGQVGIFDATNSSRK-------------RRNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQQSP 487 (707)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e-------------~R~~l~~---l----~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~p 487 (707)
|=..|+++|+|-+...+- .+..+.+ + ...|+.++-+-+.. +.+..++|++.+.. .|
T Consensus 110 --lP~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhI-sk~eQ~kRl~~r~~-~p 185 (264)
T TIGR03709 110 --LPERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHI-SKEEQKKRFLARLD-DP 185 (264)
T ss_pred --CCCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeC-CHHHHHHHHHHHhc-CC
Confidence 224699999998766542 1222222 1 56788777666666 47889999988865 44
Q ss_pred C
Q 005233 488 D 488 (707)
Q Consensus 488 d 488 (707)
+
T Consensus 186 ~ 186 (264)
T TIGR03709 186 T 186 (264)
T ss_pred c
Confidence 3
No 242
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.22 E-value=0.028 Score=57.03 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=31.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.+..|+++|-||+||||+|+.+++++...+.....++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 456899999999999999999999987666666666553
No 243
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.21 E-value=0.0093 Score=64.63 Aligned_cols=34 Identities=32% Similarity=0.288 Sum_probs=27.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
.+.+|+++|.+|||||++|..|++.++...++.|
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~D 36 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISAD 36 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecc
Confidence 4579999999999999999999998764433333
No 244
>CHL00181 cbbX CbbX; Provisional
Probab=96.20 E-value=0.12 Score=55.39 Aligned_cols=31 Identities=35% Similarity=0.440 Sum_probs=26.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCC
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi 380 (707)
.+.-|+|.|-||+||||+|+.+++.+...|+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4556899999999999999999998876554
No 245
>PLN02422 dephospho-CoA kinase
Probab=96.19 E-value=0.056 Score=56.38 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=24.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+|.++|-+||||||+++.|++ ++.. +++.|++
T Consensus 3 ~igltG~igsGKstv~~~l~~-~g~~-----~idaD~~ 34 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFKS-SGIP-----VVDADKV 34 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCe-----EEehhHH
Confidence 699999999999999999994 3433 4555554
No 246
>PRK13768 GTPase; Provisional
Probab=96.18 E-value=0.011 Score=62.09 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=34.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+++|++.|.+|+||||++..++..+...|.++-+++.|-
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 468999999999999999999999988898888887653
No 247
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.18 E-value=0.021 Score=52.12 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=28.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
...++++|-||+||||+++.+++.+...+.....++.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 4478899999999999999999987544444444433
No 248
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.16 E-value=0.16 Score=53.85 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=36.3
Q ss_pred hhhhcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCC
Q 005233 338 AVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (707)
Q Consensus 338 ~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi 380 (707)
.+.|.+..+.++...||++-|--|+|||++|++||+.|+...+
T Consensus 58 ~l~Dktskrf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hf 100 (393)
T KOG3877|consen 58 GLKDKTSKRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHF 100 (393)
T ss_pred hhcchhhhhhcccceEEEEeCCcccCchhHHHHHHHHhCCccc
Confidence 3446677777888899999999999999999999999986543
No 249
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.16 E-value=0.016 Score=58.89 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=26.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
++|.++|-+||||||+++.|+. ++. .+++.|+.-+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~-----~vid~D~i~~ 36 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGF-----LIVDADQVAR 36 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCC-----eEEeCcHHHH
Confidence 3799999999999999999996 333 3566665433
No 250
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.14 E-value=0.074 Score=54.35 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
....++.++|.||+|||++|.+++...-..+.++..++.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3567999999999999999999998776667777777664
No 251
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.11 E-value=0.038 Score=58.06 Aligned_cols=32 Identities=25% Similarity=0.101 Sum_probs=25.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
++|-++|-.||||||+++.|.+.++...+++|
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD 33 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDAD 33 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehH
Confidence 47999999999999999999987554444443
No 252
>PLN02796 D-glycerate 3-kinase
Probab=96.09 E-value=0.007 Score=66.39 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=34.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
.+|++|.++|.+||||||+++.|...+...+.++-.++.|++
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 478999999999999999999999998766666666666555
No 253
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.08 E-value=0.0098 Score=58.97 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=22.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+|+++|-|||||||+|..|+..++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 689999999999999999998864
No 254
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.04 E-value=0.083 Score=54.33 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=74.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEechh----hHHHhhC--CCCCCC-CCC-CCCHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGK----YRRLKHG--VNQSAD-FFR-ADNPEGMEARNEVAA 420 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~dd----yRr~~~g--~~~~~~-f~~-~~~e~~~~~~~~vA~ 420 (707)
+.-+++++|-||+|||+++.+++..+... +.++-.|+.+. .++++.. .+-+.. +.. ....+.+..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------ 85 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDWER------ 85 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHH------
Confidence 45799999999999999999998777655 78887777542 2222111 111100 000 001111111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 005233 421 LAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (707)
Q Consensus 421 ~~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a 498 (707)
+.+....+. .....|.|....+.+ -++.+..+ .++++++++|+..- .+ . .++ ... +....
T Consensus 86 --~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~----~l--------~-~~~-~~~-~~~~~ 147 (242)
T cd00984 86 --LAEAIGELK-ELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQ----LM--------S-GSK-KKG-NRQQE 147 (242)
T ss_pred --HHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCch----hc--------C-CCC-CCC-CHHHH
Confidence 111122222 234566666555544 45666666 66688999997422 11 1 111 112 34445
Q ss_pred HHHHHHHHHhhhhhcc
Q 005233 499 LQDFKNRLANYEKVYE 514 (707)
Q Consensus 499 ~~df~~Ri~~y~~~yE 514 (707)
+..+.+++..+.+.+.
T Consensus 148 ~~~~~~~L~~la~~~~ 163 (242)
T cd00984 148 VAEISRSLKLLAKELN 163 (242)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 5667777776655544
No 255
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.04 E-value=0.062 Score=54.15 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=30.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
.+..++.++|.||||||++|.+++......+.++-.++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 356799999999999999999999877666656655533
No 256
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.02 E-value=0.059 Score=64.90 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=28.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+|.+.|-|||||||+|+.|++.|++..+++--+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~ 35 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAM 35 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcE
Confidence 789999999999999999999998776655544
No 257
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.01 E-value=0.04 Score=56.97 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLT 372 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~La 372 (707)
.|.+++++|.||+||||+|+.|+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 36789999999999999999885
No 258
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.078 Score=60.72 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=70.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCce-EEEec-hhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT-KHFNV-GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~t-dv~~~-ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
+-.++|+|-||+||||+|+.|++.|.-..... ...+. ..-+....+...+-..++.....+...+.++...+.. .
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~---~ 116 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKF---A 116 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHh---h
Confidence 45799999999999999999999986421110 00000 0012212221111111111111112222122111100 0
Q ss_pred HHhcCCeEEEEeCCCCC-HHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 005233 429 WMHEGGQVGIFDATNSS-RKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~-~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (707)
-......++|+|-...- .+.-+.+... .+....++|| ..|+....+...|..|-. .=++... +.++ +..+.+++
T Consensus 117 p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFI-LaTte~~kI~~TI~SRCq-~~~f~~l-s~~~-i~~~L~~i 192 (484)
T PRK14956 117 PMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFI-LATTEFHKIPETILSRCQ-DFIFKKV-PLSV-LQDYSEKL 192 (484)
T ss_pred hhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEE-eecCChhhccHHHHhhhh-eeeecCC-CHHH-HHHHHHHH
Confidence 01122469999987654 4444444443 5544566676 345555666666665532 2344444 3433 34555555
Q ss_pred Hh
Q 005233 507 AN 508 (707)
Q Consensus 507 ~~ 508 (707)
..
T Consensus 193 ~~ 194 (484)
T PRK14956 193 CK 194 (484)
T ss_pred HH
Confidence 43
No 259
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=95.97 E-value=0.1 Score=54.40 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=70.7
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
..|+||+|-|..||||.-+.+.|...|.-.|+++..|..-. ..+...-.+...=+.
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt-----------------~eE~~~p~lwRfw~~------- 84 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPS-----------------DRERTQWYFQRYVQH------- 84 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCC-----------------HHHHcChHHHHHHHh-------
Confidence 35999999999999999999999999888887776662100 011111111111111
Q ss_pred HHhcCCeEEEEeCCCCCHHH-------------HHHHH---HH----HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 429 WMHEGGQVGIFDATNSSRKR-------------RNMLM---KM----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~-------------R~~l~---~l----~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
|=..|+++|+|-+....-- ...+. .+ .+.|+.++-+-+.. +.+..++|++.+..
T Consensus 85 -lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhI-sk~eQ~kRl~~r~~ 158 (230)
T TIGR03707 85 -LPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSV-SREEQLRRFKARID 158 (230)
T ss_pred -CCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CHHHHHHHHHHHhc
Confidence 2246999999987665421 11121 22 56788777766666 47888999988865
No 260
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.95 E-value=0.024 Score=58.82 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=24.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
=++|.|.||.||||||+.||+.++ .+...+++
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~---~~~~~~sg 83 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELG---VNFKITSG 83 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT-----EEEEEC
T ss_pred eEEEECCCccchhHHHHHHHhccC---CCeEeccc
Confidence 589999999999999999999855 34444433
No 261
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.95 E-value=0.068 Score=56.23 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=25.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
...-+++.|-||+||||+|+.+++.+...+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 345688999999999999999999886544
No 262
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.95 E-value=0.057 Score=64.48 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=29.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
..+|.+.|.+||||||+|+.|+++|++..++++.+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~ 476 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGAL 476 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHh
Confidence 45788899999999999999999998876555433
No 263
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.93 E-value=0.026 Score=54.75 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=18.1
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~ 374 (707)
|+++|=||+|||||++.|+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 264
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=95.93 E-value=0.074 Score=61.11 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=73.5
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
...|++|+|-|+-||||++..+.|.+.|...|+++..+..- ...+...--+...-..
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P-----------------~~eE~~~~flwRfw~~------ 93 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRP-----------------SDEERERPPMWRFWRR------ 93 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCC-----------------CHHHhcCcHHHHHHHh------
Confidence 34799999999999999999999999999888877666221 0111111111122221
Q ss_pred HHHhcCCeEEEEeCCCCCH-------------HHHHHHHH---H----HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCC
Q 005233 428 SWMHEGGQVGIFDATNSSR-------------KRRNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQQSP 487 (707)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~-------------e~R~~l~~---l----~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~p 487 (707)
|=..|.++|+|-+...+ +.+..+.+ + ...|+.++-+-+.. +.+..++|++.|.. .|
T Consensus 94 --lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhI-sk~EQ~kRl~~r~~-~P 169 (493)
T TIGR03708 94 --LPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHL-SKKQQKERLKKLEK-DP 169 (493)
T ss_pred --CCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CHHHHHHHHHHHhc-CC
Confidence 22469999999876554 22222222 1 56788777666666 47888999988865 44
No 265
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.92 E-value=0.0097 Score=66.73 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=35.8
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
..+|++|-+.|.+||||||+++.|...+...+.++-+++.|+|
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 3479999999999999999999998887666666777776665
No 266
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.089 Score=62.18 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=24.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-.++|+|-+|+||||+|+.|++.|..
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3557899999999999999999999864
No 267
>PRK12377 putative replication protein; Provisional
Probab=95.91 E-value=0.048 Score=57.41 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=34.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
.-++|.|-||+|||+||.+|+..+...+..+..++..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 47899999999999999999999988888887777655533
No 268
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.11 Score=61.66 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+-.++|+|-||+||||+|+.|++.|..
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999999864
No 269
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.91 E-value=0.13 Score=53.34 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=31.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
.++++|-||+||||++++++.++...+.++..++.++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 6899999999999999999998887777777776644
No 270
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.90 E-value=0.0099 Score=63.53 Aligned_cols=42 Identities=33% Similarity=0.362 Sum_probs=36.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc-C-CceEEEechhhH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-G-HDTKHFNVGKYR 391 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-g-i~tdv~~~ddyR 391 (707)
++.+|+|+|.+|+||||++..|+.++... + .++-+++.|.||
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 57799999999999999999999998765 4 788888888775
No 271
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.013 Score=59.52 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=29.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
-++|-+.|...|||||||+.|.+++.... +++-|||
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~----lIhqDDF 39 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCS----LIHQDDF 39 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCe----eeccccc
Confidence 36788899999999999999999976432 6766666
No 272
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.88 E-value=0.011 Score=63.63 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=33.4
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~ddy 390 (707)
...|.+|-+.|-+||||||+|+.|...+... ...+.+++.|+|
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 4578999999999999999999999887632 335566666654
No 273
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=95.87 E-value=0.025 Score=49.11 Aligned_cols=54 Identities=22% Similarity=0.473 Sum_probs=44.4
Q ss_pred EEEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeEEEEEeCCCCCceeeeEEEe
Q 005233 32 YVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLK 96 (707)
Q Consensus 32 ~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~ls~~~~~~~~~leyKf~l~ 96 (707)
.|.|++.+|. ...+.|.|+-. +|+ ..+|++.+.+.|++++.+++ ...+|||++-
T Consensus 3 ~vtf~~~ap~---a~~V~v~G~fn---~W~---~~~m~~~~~G~w~~~~~l~~--G~y~Ykf~vd 56 (82)
T cd02861 3 PVVFAYRGPE---ADSVYLAGSFN---NWN---AIPMEREGDGLWVVTVELRP--GRYEYKFVVD 56 (82)
T ss_pred cEEEEEECCC---CCEEEEEeECC---CCC---cccCEECCCCcEEEEEeCCC--CcEEEEEEEC
Confidence 5789999994 36788888765 787 67999988899999998876 4479999984
No 274
>PF13173 AAA_14: AAA domain
Probab=95.86 E-value=0.061 Score=50.24 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=50.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~ 431 (707)
.++++.|..|+||||+++++++.+. ..-+.-.++.++.+... .. ..++....++ ...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~-----------------~~-~~~~~~~~~~----~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRR-----------------LA-DPDLLEYFLE----LIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHH-----------------Hh-hhhhHHHHHH----hhc
Confidence 4799999999999999999998865 22233344444443210 00 0001111111 112
Q ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHc
Q 005233 432 EGGQVGIFDATNSSRKRRNMLMKMAE 457 (707)
Q Consensus 432 ~~G~vVIlDAtn~~~e~R~~l~~l~~ 457 (707)
.+...+++|-....+.....++.+.+
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d 85 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVD 85 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHH
Confidence 24678999999888888788887733
No 275
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.86 E-value=0.097 Score=53.14 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=30.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (707)
...+++++|-||+||||+|.+++..+...+.++-.++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 5679999999999999999999988766666665553
No 276
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.84 E-value=0.013 Score=58.44 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=31.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
.+.+|.++|.+||||||+.+.|.+.|...++++-++
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~I 40 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEE
Confidence 466899999999999999999999998777766555
No 277
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.83 E-value=0.059 Score=64.50 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+-.++|+|-+|+||||+|+.|++.|..
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 557889999999999999999999864
No 278
>PRK05973 replicative DNA helicase; Provisional
Probab=95.81 E-value=0.0097 Score=62.19 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=31.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
+.-++++.|-||+|||++|-+++...-..|.++-.|+..
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 456899999999999999999987765567777777654
No 279
>PLN02748 tRNA dimethylallyltransferase
Probab=95.79 E-value=0.014 Score=66.64 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=52.4
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC------------CCCCCCCCHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS------------ADFFRADNPEGMEARN 416 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~------------~~f~~~~~e~~~~~~~ 416 (707)
..+.+|+++|-+|||||+||..|++.++...++.|.+- -||.+-.+.... .++.+...+-......
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQ--VYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~ 97 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQ--VYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFR 97 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchhe--eeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHH
Confidence 45668999999999999999999998764333333210 244433322111 1233333333344445
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Q 005233 417 EVAALAMEDMISWMHEGGQVGIFDATNSS 445 (707)
Q Consensus 417 ~vA~~~l~d~~~~L~~~G~vVIlDAtn~~ 445 (707)
+.|..+++++ +..+..++|+-+|+..
T Consensus 98 ~~A~~~I~~I---~~rgk~PIlVGGTglY 123 (468)
T PLN02748 98 DHAVPLIEEI---LSRNGLPVIVGGTNYY 123 (468)
T ss_pred HHHHHHHHHH---HhcCCCeEEEcChHHH
Confidence 5555555533 3445567777777644
No 280
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.11 Score=58.13 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=25.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-.++|+|.||+||||+|+.+++.|..
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3557999999999999999999999865
No 281
>PRK06893 DNA replication initiation factor; Validated
Probab=95.76 E-value=0.11 Score=53.70 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=29.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
.++++|-||+|||||+++++..+...+.++..++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 68999999999999999999998777767666644
No 282
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.75 E-value=0.034 Score=51.22 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=25.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc-----CCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-----GHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-----gi~tdv~~~ 387 (707)
++.+++++|-||+|||++++.+++.+... ..++..++.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC 45 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe
Confidence 45689999999999999999999987643 444444544
No 283
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.72 E-value=0.071 Score=59.66 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=37.3
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhh----cCCceEEEechhhHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW----LGHDTKHFNVGKYRR 392 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~----~gi~tdv~~~ddyRr 392 (707)
.+|.+|+|+|.+|+||||++.+|+.++.. .+.++-+++.|.||-
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 45789999999999999999999988763 467888888888864
No 284
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.058 Score=59.67 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=52.4
Q ss_pred ccccccccccCCCCCccchhhHHhhhhcccCCCCCCcE-EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH
Q 005233 315 IDLKLDTETKNSMPAAAGAVAAAAVADQMLGPKEHRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (707)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~a~~~~~~~~~~~~~~~~~-lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~ 393 (707)
++|.++..+++-+.|+ +--+-..-+.+.-. .+|+ -|+|+|.||+|||-||++++-..+ +..||+.--
T Consensus 212 ~DIagl~~AK~lL~EA---VvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNVSss--- 279 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEA---VVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNVSSS--- 279 (491)
T ss_pred HhhcchHHHHHHHHHH---HhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEechh---
Confidence 5677776666655542 22222222222111 2344 699999999999999999998855 444544100
Q ss_pred hhCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 005233 394 KHGVNQSADFFRADNPEGMEARNEVAAL 421 (707)
Q Consensus 394 ~~g~~~~~~f~~~~~e~~~~~~~~vA~~ 421 (707)
.-..-++.+.++.++.+.++|+.
T Consensus 280 -----tltSKwRGeSEKlvRlLFemARf 302 (491)
T KOG0738|consen 280 -----TLTSKWRGESEKLVRLLFEMARF 302 (491)
T ss_pred -----hhhhhhccchHHHHHHHHHHHHH
Confidence 00112344667677777777663
No 285
>PRK08727 hypothetical protein; Validated
Probab=95.70 E-value=0.13 Score=53.37 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=30.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.|+++|-+|+|||+++++++..+...+.++..++..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 499999999999999999999888778777776553
No 286
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.70 E-value=0.068 Score=57.23 Aligned_cols=30 Identities=33% Similarity=0.528 Sum_probs=25.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCC
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi 380 (707)
..-+++.|-||+||||+|+.+++.+...+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 345899999999999999999999876654
No 287
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.68 E-value=0.046 Score=57.89 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=39.0
Q ss_pred CCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 347 ~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
..++|.+|+.+|+-||||||+.++|-.+|....-..+++|.|--
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPA 58 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPA 58 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHH
Confidence 34679999999999999999999999999988888899988744
No 288
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.082 Score=58.87 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=33.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHh-hcC-CceEEEechhhH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 391 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~-~~g-i~tdv~~~ddyR 391 (707)
.++-+|+|+|.+|+||||++.+|+.++. ..| .++-++..|.||
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 3466899999999999999999998764 334 466677777775
No 289
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.66 E-value=0.01 Score=61.90 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=27.5
Q ss_pred EEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 356 LVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 356 lvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
++|.|||||||+++.+.+++...+.++.++|.|-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 4799999999999999999999999999999873
No 290
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.63 E-value=0.013 Score=57.12 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+|.++|.+||||||++.+|.+.|...|+++-++
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999999999998888888777
No 291
>PRK09087 hypothetical protein; Validated
Probab=95.61 E-value=0.095 Score=54.27 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=58.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh-hCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK-HGVNQ------SADFFRADNPEGMEARNEVAALAMED 425 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~-~g~~~------~~~f~~~~~e~~~~~~~~vA~~~l~d 425 (707)
.++++|-+|||||||++.+++..+.. .++.++..... ..... +.++.. ..++ .+-.
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~l~iDDi~~~~-~~~~-----------~lf~ 108 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL-----LIHPNEIGSDAANAAAEGPVLIEDIDAGG-FDET-----------GLFH 108 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE-----EecHHHcchHHHHhhhcCeEEEECCCCCC-CCHH-----------HHHH
Confidence 47999999999999999999775433 33222111100 00000 001111 1111 1223
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH---HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM---AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 426 ~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l---~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
++..+.+.|..+|+.++..-.+.......+ .+.+ ..+++.-.+.+.+.+-++++..
T Consensus 109 l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 109 LINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred HHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHHHHHHHHHHHH
Confidence 444455577788887776655543322223 3333 3566666677766666665543
No 292
>PLN03025 replication factor C subunit; Provisional
Probab=95.61 E-value=0.1 Score=56.57 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++|+|-||+||||+|+.+++.+.
T Consensus 37 lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 67899999999999999999874
No 293
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=95.61 E-value=0.026 Score=60.22 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCC-------CCCEEEEcCcHHHHHHHHHh
Q 005233 583 ILSDAGEIYAKKLANFVEKRLKSE-------RAASIWTSTLQRTILTASPI 626 (707)
Q Consensus 583 pLTe~G~~QA~~Lg~~L~~~l~~~-------~~d~I~TSPl~RAiQTA~~i 626 (707)
.||+.|.+|...+|++|+++.... .--.|+||...||++||+.+
T Consensus 62 ~LT~~G~~q~~~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af 112 (347)
T PF00328_consen 62 QLTPRGMEQHYQLGKRLRERYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAF 112 (347)
T ss_dssp SBTHHHHHHHHHHHHHHHHHHHTSSTSSS-TTTEEEEEESSHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHHHHhccccccccceeEEEeccchHHHHHHHH
Confidence 499999999999999999886432 22468999999999999998
No 294
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.57 E-value=0.012 Score=65.03 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=26.5
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
..++.+++|+|-||+||||+|++|++.|..
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999999999865
No 295
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.56 E-value=0.11 Score=54.54 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=59.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEechh----hHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGK----YRRLKHGVNQSADFFRADNPEGMEARNEVAALAME 424 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~dd----yRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~ 424 (707)
..-++++.|-||+||||++.+++..+-.. +.++-.++.+. ..+.+........+.......... .+++ .
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~-----~ 102 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFIYT-LEEF-----D 102 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcccCCcccccc-HHHH-----H
Confidence 34588999999999999999998876554 77777776632 211111100000110000000000 0111 1
Q ss_pred HHHHHHhcCCeEEEEeCCCC-CH-HHHHHHHHH-HcCCceEEEEE
Q 005233 425 DMISWMHEGGQVGIFDATNS-SR-KRRNMLMKM-AEGNCKIIFLE 466 (707)
Q Consensus 425 d~~~~L~~~G~vVIlDAtn~-~~-e~R~~l~~l-~~~~~~vifIE 466 (707)
...+.+.+.+...|+|.... +. +-.+.++.+ .++++++++|+
T Consensus 103 ~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID 147 (271)
T cd01122 103 AAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIID 147 (271)
T ss_pred HHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEEC
Confidence 11122333566777776553 33 345566656 66788888886
No 296
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.55 E-value=0.12 Score=50.54 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=28.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
++++.|-||+|||++|.+++...-..|.++-.++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 37889999999999999998776666777777765
No 297
>PRK04296 thymidine kinase; Provisional
Probab=95.54 E-value=0.057 Score=54.26 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=30.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (707)
..+++++|-||+||||++..++.++...+.++.++.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358999999999999999999988876677777774
No 298
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.53 E-value=0.12 Score=54.30 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=34.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
..++|.|-||+|||+||.+|+.+|...+..+.+++..+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 378999999999999999999999888888888877555
No 299
>PRK13695 putative NTPase; Provisional
Probab=95.53 E-value=0.15 Score=50.17 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (707)
-|+++|.||+||||+++.|...+...|+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 58999999999999999998887644554
No 300
>PRK05642 DNA replication initiation factor; Validated
Probab=95.53 E-value=0.096 Score=54.39 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=31.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
-.++++|-+|+|||+|+++++.++...+.++..++.+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 357899999999999999999887766777777766443
No 301
>PRK04195 replication factor C large subunit; Provisional
Probab=95.52 E-value=0.054 Score=62.19 Aligned_cols=38 Identities=29% Similarity=0.346 Sum_probs=29.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
+..++|+|.||+||||+|+.|++.++ .....+|..++|
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~---~~~ielnasd~r 76 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG---WEVIELNASDQR 76 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEcccccc
Confidence 56899999999999999999999864 455556554443
No 302
>PRK08116 hypothetical protein; Validated
Probab=95.45 E-value=0.07 Score=56.69 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
..-++|.|-||+|||+||.+++.+|...+..+..++..++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l 153 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL 153 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3468999999999999999999999877888877776554
No 303
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.45 E-value=0.22 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+||++|++|+|||+-.+.|.. ++|
T Consensus 3 lvIVTGlSGAGKsvAl~~lED-lGy 26 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLED-LGY 26 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHh-cCe
Confidence 789999999999998888874 344
No 304
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.44 E-value=0.13 Score=62.77 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=24.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-.++|+|-||+||||+|+.|++.|..
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 3567899999999999999999999864
No 305
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.43 E-value=0.02 Score=49.05 Aligned_cols=34 Identities=32% Similarity=0.303 Sum_probs=29.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (707)
+|+++|.+|+||||++..|+..|...+.++-+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4788999999999999999999988888777663
No 306
>PRK08181 transposase; Validated
Probab=95.42 E-value=0.088 Score=56.10 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=32.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
.-++|+|-||+|||+||.+|+..+...|.++..++..+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L 145 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL 145 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH
Confidence 359999999999999999999988878888877765444
No 307
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.39 E-value=0.051 Score=61.02 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=24.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
-...|+++|-+|||||||+++|+++++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 34579999999999999999999986643
No 308
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.37 E-value=0.023 Score=52.81 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=31.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
|+++|.+|+||||++..|+.++...+.++-+++.|
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 78999999999999999999998888888778665
No 309
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.37 E-value=0.14 Score=58.14 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=36.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEechhhHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRR 392 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~ddyRr 392 (707)
+.+|+|+|.+|+||||++..|+.++. ..+.++-+++.|.||-
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 45899999999999999999998876 4568888999998873
No 310
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.36 E-value=0.016 Score=62.21 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=24.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCce
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~t 382 (707)
+|+++|.+|||||++|..|++.++...++.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~ 30 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISV 30 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEe
Confidence 589999999999999999999875443333
No 311
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.34 E-value=0.14 Score=59.27 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+-.++|+|-||+||||+|+.|++.|.-
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457999999999999999999999863
No 312
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.34 E-value=0.024 Score=55.72 Aligned_cols=34 Identities=29% Similarity=0.232 Sum_probs=30.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
.+|.++|.+||||||++..|.+.|...|.++-++
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 4799999999999999999999998888877666
No 313
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.33 E-value=0.2 Score=56.45 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-++|+|-||+||||+|+.|++.++
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 577899999999999999998864
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.29 E-value=0.025 Score=60.94 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=35.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
..+.+|.++|.||+||||+...|+..+...+.++-+++.|..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 357788899999999999999999999888888888876533
No 315
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.27 E-value=0.32 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
...|+++|.||+||||+...|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999999999999998643
No 316
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=95.25 E-value=0.18 Score=49.77 Aligned_cols=120 Identities=14% Similarity=0.163 Sum_probs=61.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCC-CCCCCCCHHHHHHHHH--------HHH-
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-DFFRADNPEGMEARNE--------VAA- 420 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~-~f~~~~~e~~~~~~~~--------vA~- 420 (707)
..+|+++|.+|+||-||-..+...|.... +..++ ||....+.... +--..-.+..|..++. -|.
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~-r~~fv-----rRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhG 78 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAGRP-RLHFV-----RRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHG 78 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhccCC-ceEEE-----EEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcC
Confidence 56999999999999999988888775431 12222 33221111000 0001112222332221 000
Q ss_pred ---HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhc
Q 005233 421 ---LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQ 485 (707)
Q Consensus 421 ---~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~ 485 (707)
-.=.++..||. .|.+||+.+. + ..+-++ ..+. -+.+.|+...++++.+|+..|.+.
T Consensus 79 L~Ygip~eId~wl~-~G~vvl~NgS---R---a~Lp~arrry~--~Llvv~ita~p~VLaqRL~~RGRE 138 (192)
T COG3709 79 LSYGIPAEIDLWLA-AGDVVLVNGS---R---AVLPQARRRYP--QLLVVCITASPEVLAQRLAERGRE 138 (192)
T ss_pred ccccCchhHHHHHh-CCCEEEEecc---H---hhhHHHHHhhh--cceeEEEecCHHHHHHHHHHhccC
Confidence 01123444565 5889987543 2 223232 2222 223334445789999999998763
No 317
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.21 Score=55.31 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=24.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-+-.++++|-||+||||+|+.+++.+.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 355789999999999999999999875
No 318
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.19 E-value=0.48 Score=50.84 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=24.3
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.-|-+++++|-||+||||+|+.+++.++
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3467888899999999999999998863
No 319
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.18 E-value=0.14 Score=53.75 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=63.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEechhhHH-----Hhh---CCCCCCCCCC-CCCHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYRR-----LKH---GVNQSADFFR-ADNPEGMEARNEVA 419 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~ddyRr-----~~~---g~~~~~~f~~-~~~e~~~~~~~~vA 419 (707)
+.-|+++.|.||+|||++|..++..+... +.++-.|+.+.-.. ... +.... .+.. ......++.+.+.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~-~i~~g~l~~~e~~~~~~~- 95 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYN-KIRSGDLSDEEFERLQAA- 95 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHH-HHHCCGCHHHHHHHHHHH-
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhh-hhhccccCHHHHHHHHHH-
Confidence 45699999999999999999999888765 58888888752222 111 11100 0111 1112223322222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-Hc-CCceEEEEEE
Q 005233 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AE-GNCKIIFLET 467 (707)
Q Consensus 420 ~~~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~-~~~~vifIE~ 467 (707)
...+. .....|.|....+.+ -++.++.+ .+ .++.++||+-
T Consensus 96 -------~~~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDy 138 (259)
T PF03796_consen 96 -------AEKLS-DLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDY 138 (259)
T ss_dssp -------HHHHH-TSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred -------HHHHh-hCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEech
Confidence 22233 345788887776665 46666666 44 7888898873
No 320
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.16 E-value=0.092 Score=58.25 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALA 422 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~ 422 (707)
-..|..+.|.|.||+|||.+|++++..+ ++....++.++.-. -+..+.++..+.+.+.|...
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~s----------k~vGEsEk~IR~~F~~A~~~ 206 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELES----------ENAGEPGKLIRQRYREAADI 206 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhc----------CcCCcHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999985 45566676644411 12234555566665656543
No 321
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.15 E-value=0.2 Score=49.44 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.-+++++|-||+||||++..|+..+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44899999999999999999987764
No 322
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.23 Score=57.97 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=24.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-+-.++|+|-||+||||+|+.|++.|.
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999999886
No 323
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.08 E-value=0.15 Score=58.53 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=24.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-.++|+|-||+||||+|+.+++.+.-
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3457899999999999999999998763
No 324
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.08 E-value=0.14 Score=53.07 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=28.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+.-++++.|-||+|||++|.+++...-..|-++-.++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 56799999999999999998876543244666655543
No 325
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.24 Score=58.59 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=24.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+-.++|+|-||+||||+|+.|++.|.-
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccc
Confidence 448999999999999999999999863
No 326
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.07 E-value=0.03 Score=52.62 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.4
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
|+|+|-||+|||++|+.|++.++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999973
No 327
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.07 E-value=0.16 Score=62.05 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=24.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-+-.++|+|-+|+||||+|+.|++.|.
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999999985
No 328
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.06 E-value=0.021 Score=54.61 Aligned_cols=29 Identities=24% Similarity=0.106 Sum_probs=25.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
...+|+|.|-+|+||||+++.|++.|+..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45689999999999999999999998754
No 329
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.085 Score=61.68 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=26.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
+.|.=|+|.|.||+|||++|++||..-+..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 567789999999999999999999886543
No 330
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.11 Score=58.63 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=89.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
.-+||+=+.--|+||||+|+.|.+-++|..+..|-+++ ....+ ++.+...+ -
T Consensus 373 e~tll~pia~igcgktt~ak~l~~lf~w~~vqnd~lsg------------------k~~~k---~~~kai~~-------~ 424 (758)
T COG5324 373 EFTLLVPIATIGCGKTTVAKILEKLFGWPVVQNDNLSG------------------KGGPK---RFAKAIIE-------E 424 (758)
T ss_pred eeEEEEEEEEeccCcccHHHHHHHHcCCcccccCCCCC------------------CCchh---HHHHHHHH-------H
Confidence 45577777888999999999999999998766655532 11111 11111111 1
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH---HcCCceEEEEEEEeC--CHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKM---AEGNCKIIFLETICN--DRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKN 504 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l---~~~~~~vifIE~~c~--d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~ 504 (707)
+.++-.+|++|-.|..-..|..+..- ...|++++-+-..-. -++....|+-+|.. .... +-|++..+..+.
T Consensus 425 ~r~~~~~v~~drnnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~---~hqs-ik~~eg~~kv~~ 500 (758)
T COG5324 425 FRNGHSVVFADRNNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGD---RHQS-IKVSEGVDKVKA 500 (758)
T ss_pred hccCceEEEEcccchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhccC---Cccc-eeeccchHHHHH
Confidence 22344577777777777777766653 334666555533221 34555666555432 1222 256677777788
Q ss_pred HHHhhhhhccCCCCC-----CeeEEeec
Q 005233 505 RLANYEKVYEPVDEG-----SYIKMIDM 527 (707)
Q Consensus 505 Ri~~y~~~yEpl~e~-----~yik~in~ 527 (707)
-+..+-++|.|++.+ .|--||..
T Consensus 501 imn~f~k~ykp~~~~~~~d~~~d~~iel 528 (758)
T COG5324 501 IMNTFYKQYKPFDAGNKHDANYDDIIEL 528 (758)
T ss_pred HHHHHHHhcCCCCCCCCccccccceeec
Confidence 888889999999954 56555544
No 331
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.99 E-value=0.033 Score=53.45 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=28.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+|.++|..+|||||+++.|.++|...|++.-++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 789999999999999999999999889887754
No 332
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.96 E-value=0.3 Score=52.13 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=35.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
++-.|+++|.+|+||||+++.|+..+...+.+.-+++.|.+|
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 346899999999999999999998887667777778887775
No 333
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.96 E-value=0.18 Score=52.91 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.6
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
....+|.++|++|.||||||+++++...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccc
Confidence 4677999999999999999999997743
No 334
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=94.95 E-value=0.21 Score=49.65 Aligned_cols=28 Identities=18% Similarity=0.086 Sum_probs=22.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCC
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi 380 (707)
+|.+.+-.|||++++|++||+.|+...+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~ 28 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYY 28 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccC
Confidence 5788999999999999999999875543
No 335
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.02 Score=58.68 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=31.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
++|.+=|..||||||+|+.||++|++..++|-.+ ||-
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGam----YRa 41 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAM----YRA 41 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHH----HHH
Confidence 7888999999999999999999999887665433 665
No 336
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.029 Score=60.60 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.-.+|++.|.||+|||+|+++||++|.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 456899999999999999999999975
No 337
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.89 E-value=0.3 Score=55.05 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=62.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhH-----HHhhC-CCCCC-CCC-CCCCHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR-----RLKHG-VNQSA-DFF-RADNPEGMEARNEVA 419 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~ddyR-----r~~~g-~~~~~-~f~-~~~~e~~~~~~~~vA 419 (707)
.+.-++++.|-||+|||++|-.++..+. ..+.++-.|+.+.-. |.... .+.+. .+. ..-+...+..+.+.+
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3566999999999999999999997775 357777777754221 11111 01110 010 011222222222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEEE
Q 005233 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLET 467 (707)
Q Consensus 420 ~~~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~-~~~vifIE~ 467 (707)
..+.+ ....|.|..+.+.+ -|..++.+ .+. ++.+++|+-
T Consensus 272 --------~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDy 313 (421)
T TIGR03600 272 --------DRLSE-KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDY 313 (421)
T ss_pred --------HHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 12332 45677776666654 47777777 444 688888873
No 338
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.87 E-value=0.24 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+|+++|-+||||||+.+.|.+++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 7899999999999999999988764
No 339
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.87 E-value=0.027 Score=66.32 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=35.9
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
...+.+.+|||.||-||||||+-+|++ .|+++..+|+.|-|-
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq---aGYsVvEINASDeRt 364 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ---AGYSVVEINASDERT 364 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh---cCceEEEeccccccc
Confidence 345779999999999999999999998 788888888876654
No 340
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.86 E-value=0.21 Score=49.02 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.-++.++|..|||||||.+.|+..+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 44899999999999999999997654
No 341
>PRK06620 hypothetical protein; Validated
Probab=94.85 E-value=0.15 Score=52.45 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-.++++|-||+||||+++.++...+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 4689999999999999999887754
No 342
>PF05729 NACHT: NACHT domain
Probab=94.83 E-value=0.026 Score=53.65 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=24.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
+++++|-||+||||+++.++..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 689999999999999999998886544
No 343
>PRK06921 hypothetical protein; Provisional
Probab=94.80 E-value=0.31 Score=51.83 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=30.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEec
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~ 387 (707)
..-++|.|-||+|||+||.+++..+... ++.+..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4468999999999999999999998766 766665644
No 344
>PRK09183 transposase/IS protein; Provisional
Probab=94.79 E-value=0.16 Score=53.61 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=31.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
...++++|-||+||||||..|+..+...|.++..++..+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 3467799999999999999998877777877776655333
No 345
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=94.78 E-value=0.052 Score=56.51 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=31.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
.+|.++|.+||||||++..|+++|...|+++-++
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 3789999999999999999999999889888887
No 346
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.78 E-value=0.29 Score=56.82 Aligned_cols=42 Identities=33% Similarity=0.302 Sum_probs=34.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhhH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYR 391 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~ddyR 391 (707)
.+.+|+|+|.+|+||||++.+|+..+... +.++.+++.|.||
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 45688999999999999999999876544 4567778887776
No 347
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.78 E-value=0.3 Score=51.54 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=29.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+..+++++|-||+|||++|.+++......|-++-.++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 56799999999999999999988765445666665554
No 348
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.72 E-value=0.36 Score=56.87 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.+-.++++|.||+||||+|+.+++.|.
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 346799999999999999999999985
No 349
>PRK04328 hypothetical protein; Provisional
Probab=94.71 E-value=0.18 Score=52.79 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=28.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+.-++++.|-||+|||++|.++...--..|.++-.++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 46799999999999999999877553344666666644
No 350
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.71 E-value=0.27 Score=58.42 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=24.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+-.++|+|-+|+||||+|+.|++.|.-
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 457899999999999999999999864
No 351
>PRK06526 transposase; Provisional
Probab=94.70 E-value=0.13 Score=54.30 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=30.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+.-++++|-||+|||++|..|+..+...|.++..++.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 4468999999999999999999888777776654433
No 352
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.47 Score=55.87 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=24.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-+-.++|+|-+|+||||+|+.|++.|.
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 466889999999999999999999986
No 353
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.67 E-value=0.039 Score=53.36 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=31.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
+|.++|.+|+||||++..|+..+...+.+.-+++.|
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 378899999999999999999998888888887665
No 354
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=94.66 E-value=0.36 Score=51.30 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.|.++|.+|+|||||+.+|....+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g 27 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGG 27 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999986544
No 355
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.66 E-value=0.064 Score=60.40 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
.|.-|+|+|.||+|||++|+.|++.++...++.+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4567999999999999999999999876665555
No 356
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.63 E-value=0.34 Score=57.90 Aligned_cols=28 Identities=36% Similarity=0.361 Sum_probs=24.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-.++|+|-+|+||||+|+.|++.|.-
T Consensus 37 l~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 37 LHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 3568999999999999999999999763
No 357
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=94.63 E-value=0.31 Score=51.19 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=64.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCC---C-CCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGV---N-QSADFFRADNPEGMEARNEVAALAMEDM 426 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~---~-~~~~f~~~~~e~~~~~~~~vA~~~l~d~ 426 (707)
++++++.|--|+||||+|..|+.++...+.++-+++.|.-.....+. . ....+.. ..+ +-...+.++
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~-~~~--------i~~r~fD~L 73 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYKALNVRRLNIMD-GDE--------INTRNFDAL 73 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHHhcCCcceeccc-CCc--------cchhhHHHH
Confidence 56778889999999999999999998888888888776332111110 1 0111111 111 111123444
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHH------HHHHH-HcCCceEEEEEEEe
Q 005233 427 ISWMHEGGQVGIFDATNSSRKRRN------MLMKM-AEGNCKIIFLETIC 469 (707)
Q Consensus 427 ~~~L~~~G~vVIlDAtn~~~e~R~------~l~~l-~~~~~~vifIE~~c 469 (707)
+..+...+..+|+|.+-..-.--. .+.++ .+.|.++++..++.
T Consensus 74 ve~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~ 123 (241)
T PRK13886 74 VEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVT 123 (241)
T ss_pred HHHHhccCCCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEEC
Confidence 445544556678887765443222 23344 67788877776554
No 358
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.61 E-value=0.41 Score=54.12 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=60.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhH-----HHhhC-CCCC-CCCC-CCCCHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR-----RLKHG-VNQS-ADFF-RADNPEGMEARNEVAA 420 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~ddyR-----r~~~g-~~~~-~~f~-~~~~e~~~~~~~~vA~ 420 (707)
+.-++++.|-||+|||+++..++..+.. .|..+-.|+.+.-. |.... .+-+ ..+. ..-....+..+.+.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a-- 271 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSA-- 271 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHH--
Confidence 5679999999999999999999987654 46677777664222 11111 0111 0000 00122222222111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 005233 421 LAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 466 (707)
Q Consensus 421 ~~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~~~~vifIE 466 (707)
...+.+ ....|.|..+.+.. -+..++.+ .++++++++|+
T Consensus 272 ------~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID 312 (434)
T TIGR00665 272 ------AGKLSE-APLYIDDTPGLTITELRAKARRLKREHGLGLIVID 312 (434)
T ss_pred ------HHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 122332 34566666555544 56777777 66788888886
No 359
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.60 E-value=0.074 Score=60.41 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=23.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+.-|+++|.||+||||+|++|+..+..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 346788999999999999999998753
No 360
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.54 E-value=0.07 Score=52.97 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=33.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~ddy 390 (707)
...++|+|.+|+|||.+|++|++.|. ....+..++|...|
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 45789999999999999999999988 45556777777666
No 361
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.52 E-value=0.22 Score=53.99 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=63.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
+.-++|.|-||+|||+||.+|+..+...|+++..++..++-+.+... + ... .+.+.++.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~-----~-~~~--------------~~~~~l~~l 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS-----I-SDG--------------SVKEKIDAV 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH-----H-hcC--------------cHHHHHHHh
Confidence 34699999999999999999999999889999888765542211100 0 000 011112222
Q ss_pred hcCCeEEEEeCCCC---CHHHHHHH-HHH--Hc-CCceEEEEEEEeCCHHHHHHHH
Q 005233 431 HEGGQVGIFDATNS---SRKRRNML-MKM--AE-GNCKIIFLETICNDRDIIERNI 479 (707)
Q Consensus 431 ~~~G~vVIlDAtn~---~~e~R~~l-~~l--~~-~~~~vifIE~~c~d~e~i~~rI 479 (707)
. .-.++|+|.... +...|..+ ..+ .. .+-..+++-+..+ .+.+.+.+
T Consensus 216 ~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~-~~el~~~~ 269 (306)
T PRK08939 216 K-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD-FDELEHHL 269 (306)
T ss_pred c-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC-HHHHHHHH
Confidence 2 467899999864 44556444 333 11 1334556665554 45555555
No 362
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.51 E-value=0.05 Score=54.27 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
+.-++|.|-||+|||++|.+++..+-..|..+..++..+.-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD 88 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec
Confidence 456999999999999999999999988999999998866544
No 363
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.50 E-value=0.045 Score=60.76 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=29.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhhHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKYRRL 393 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~ddyRr~ 393 (707)
=.||-|.||+||||||+.|+..++.. -++.......+.|+.
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i 92 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREI 92 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHH
Confidence 46888999999999999999987643 233333444555553
No 364
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.49 E-value=0.049 Score=55.77 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=31.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
.-.++++|-||+||||+|+.+++.+...+.....++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 3468899999999999999999988777777777755
No 365
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.48 E-value=0.41 Score=56.74 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=25.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-.++|+|-+|+||||+|+.|++.|.-
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4568999999999999999999999863
No 366
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.45 E-value=0.23 Score=55.34 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=36.6
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
...+.+++++|--.|||||++..|+.++...|.++.+++.|
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaD 110 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDAD 110 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCC
Confidence 34567899999999999999999999999999999998875
No 367
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.45 E-value=0.41 Score=52.08 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=24.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-+-.++|+|-||+||||+|+.|++.|.
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456889999999999999999999975
No 368
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.43 E-value=0.41 Score=54.51 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=30.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~ddy 390 (707)
-++++|-||+|||+|+++++..+... +.++..++..++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 37889999999999999999998765 566666666554
No 369
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.40 E-value=0.37 Score=55.92 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=25.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-.++|+|-||+||||+|+.|++.|..
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3558999999999999999999999864
No 370
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.35 E-value=0.27 Score=52.44 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhc
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
++++|-||+||||+++.+++.+...
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6999999999999999999987533
No 371
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=94.34 E-value=0.048 Score=56.73 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=65.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
.|+||+|-|+.||||..+.+.|.+.|.-.++++..|..-.-.... ..| +...-..
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~------~p~-----------lwRfw~~-------- 84 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELR------RPF-----------LWRFWRA-------- 84 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHT------S-T-----------THHHHTT--------
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcC------CCc-----------HHHHHHh--------
Confidence 579999999999999999999999988888888777321111100 001 0011111
Q ss_pred HhcCCeEEEEeCCCCCHHH-------------HHHH---HH---H-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCC
Q 005233 430 MHEGGQVGIFDATNSSRKR-------------RNML---MK---M-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPD 488 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~-------------R~~l---~~---l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd 488 (707)
|=..|+++|+|-.....-- ...+ .. + ...|+.++-+-+.. +.+..++|++.+.. .|.
T Consensus 85 lP~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhI-sk~eQ~kRl~~~~~-~p~ 161 (228)
T PF03976_consen 85 LPARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHI-SKKEQKKRLKEREE-DPL 161 (228)
T ss_dssp S--TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE---HHHHHHHHHHHHH-SCC
T ss_pred CCCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEe-CHHHHHHHHHHHhc-Ccc
Confidence 1135999999987654321 1111 11 1 56787776666666 47889999998876 453
No 372
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.34 E-value=0.042 Score=58.93 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=37.3
Q ss_pred CCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 345 GPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 345 ~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
.+.+++|+++-+.|-+|+||+++|+.|++.+...|.++..+
T Consensus 104 n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V 144 (344)
T KOG2170|consen 104 NPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV 144 (344)
T ss_pred CCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH
Confidence 35578999999999999999999999999999999888766
No 373
>PRK05636 replicative DNA helicase; Provisional
Probab=94.33 E-value=0.33 Score=56.22 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=64.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechh----hH-HHhhCCCC-C-CCC-CCCCCHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YR-RLKHGVNQ-S-ADF-FRADNPEGMEARNEVA 419 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~dd----yR-r~~~g~~~-~-~~f-~~~~~e~~~~~~~~vA 419 (707)
.+.-+|++.|-||.|||++|-.++..... .+..+-+|+..- +. |.+..... . ..+ ...-+++.+..+.+.+
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~ 342 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRL 342 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 35679999999999999999999877643 356666666532 21 11111100 0 001 1111233333332222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 005233 420 ALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (707)
Q Consensus 420 ~~~l~d~~~~L~~~G~vVIlDAtn~~~-e~R~~l~~l-~~~~~~vifIE 466 (707)
. .+. .....|.|..+.+. +-|..++.+ .++++.+++|+
T Consensus 343 ~--------~l~-~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvID 382 (505)
T PRK05636 343 G--------KIA-QAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVD 382 (505)
T ss_pred H--------HHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 2 232 35677888888775 457778877 66788888886
No 374
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.33 E-value=0.033 Score=50.68 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
|++.|-||.|||++|+.|++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999988763
No 375
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.31 E-value=0.036 Score=60.51 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=25.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (707)
-|+|.|.||+||||+++.|++.|++..++
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 38899999999999999999999876543
No 376
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.26 E-value=0.068 Score=60.29 Aligned_cols=28 Identities=36% Similarity=0.390 Sum_probs=24.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
--|+|+|.||+|||++|+.|++.+++..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 4589999999999999999999876543
No 377
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.25 E-value=1.1 Score=51.05 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
.|.-++|+|.||+|||++|++++..+...
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 35568899999999999999999987654
No 378
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.25 E-value=0.22 Score=54.42 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=29.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+..++.+.|-|||||||||-.++......+-.+-.++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 56799999999999999999988776655655555543
No 379
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.24 E-value=0.12 Score=48.82 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
++-|+++|.||+||||+..+|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 567999999999999999999654
No 380
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.19 E-value=0.093 Score=51.22 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=33.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+.++.+-+|+||||+|..|+..+...|.++-+++.|-
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 5677899999999999999999999999999998764
No 381
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.18 E-value=0.39 Score=54.80 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=33.9
Q ss_pred hcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 341 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
|.+++-.=...-++++.|-||+||||++.+++..+...+.++-.++.
T Consensus 70 D~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~ 116 (446)
T PRK11823 70 DRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG 116 (446)
T ss_pred HHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 44443222245699999999999999999999877655666655554
No 382
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.16 E-value=0.21 Score=52.68 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=55.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
++.=+++.|-||+|||+||.+|+..+-..|+++..+..-+.-+.+... + .... ...++.+. +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~-----~-~~~~-----~~~~l~~~-l------ 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA-----F-DEGR-----LEEKLLRE-L------ 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH-----H-hcCc-----hHHHHHHH-h------
Confidence 456799999999999999999999999779999988775442222110 0 0000 00111111 1
Q ss_pred HhcCCeEEEEeCCCCCH---HHHHHHHHH
Q 005233 430 MHEGGQVGIFDATNSSR---KRRNMLMKM 455 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~---e~R~~l~~l 455 (707)
..-.+.|+|.....+ ..+..+.++
T Consensus 166 --~~~dlLIiDDlG~~~~~~~~~~~~~q~ 192 (254)
T COG1484 166 --KKVDLLIIDDIGYEPFSQEEADLLFQL 192 (254)
T ss_pred --hcCCEEEEecccCccCCHHHHHHHHHH
Confidence 146899999988744 457777765
No 383
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=94.16 E-value=0.13 Score=44.47 Aligned_cols=52 Identities=17% Similarity=0.465 Sum_probs=40.9
Q ss_pred EEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeEEEEEeCCCCCceeeeEEEe
Q 005233 33 VSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLLK 96 (707)
Q Consensus 33 ~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~ls~~~~~~~~~leyKf~l~ 96 (707)
|-|+..+ ....+.|.|+-. +|++ .++|.+.... |.+.+.+|+ ...+|||++-
T Consensus 4 v~f~~~~----~a~~V~v~G~F~---~W~~--~~pm~~~~~~-~~~~~~L~~--g~y~YkF~Vd 55 (79)
T cd02859 4 TTFVWPG----GGKEVYVTGSFD---NWKK--KIPLEKSGKG-FSATLRLPP--GKYQYKFIVD 55 (79)
T ss_pred EEEEEcC----CCcEEEEEEEcC---CCCc--cccceECCCC-cEEEEEcCC--CCEEEEEEEC
Confidence 4455544 457888889875 8987 5899998776 999999987 5789999983
No 384
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.13 E-value=0.15 Score=59.63 Aligned_cols=111 Identities=24% Similarity=0.284 Sum_probs=62.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc-------CCceEEEechhhHHHhhCCCCCCCCCC-----------CC-CHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL-------GHDTKHFNVGKYRRLKHGVNQSADFFR-----------AD-NPEG 411 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~-------gi~tdv~~~ddyRr~~~g~~~~~~f~~-----------~~-~e~~ 411 (707)
...+.++|-+||||||+++.|.+.+... |++..-++.+.+|+......++...|. ++ .+
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~-- 432 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATD-- 432 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCH--
Confidence 3467799999999999999999987641 444455666777776554444432233 21 22
Q ss_pred HHHHHHHHHHH-HHHHHHHHhcCCeEEEEe--CCCCCHHHHHHHHH---HHcCCceEEEEE
Q 005233 412 MEARNEVAALA-MEDMISWMHEGGQVGIFD--ATNSSRKRRNMLMK---MAEGNCKIIFLE 466 (707)
Q Consensus 412 ~~~~~~vA~~~-l~d~~~~L~~~G~vVIlD--Atn~~~e~R~~l~~---l~~~~~~vifIE 466 (707)
+.+.+.++.+ +.|.+.-+ .+|...++. +.+..-.+|+++.- +.+ +.+++.++
T Consensus 433 -eei~~a~k~a~~~d~I~~l-p~g~dt~vge~G~~LSgGQrQrlaiARall~-~~~ILILD 490 (567)
T COG1132 433 -EEIEEALKLANAHEFIANL-PDGYDTIVGERGVNLSGGQRQRLAIARALLR-NPPILILD 490 (567)
T ss_pred -HHHHHHHHHhChHHHHHhC-cccccceecCCCccCCHHHHHHHHHHHHHhc-CCCEEEEe
Confidence 2333333333 23333223 235555554 56677666665543 333 34666664
No 385
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.12 E-value=0.41 Score=51.11 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
--++++|.||+|||++|+.++..++
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999999865
No 386
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.12 E-value=0.16 Score=56.89 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.|.-|+|+|.||+|||++|++++..++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 4556899999999999999999998653
No 387
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=94.12 E-value=0.034 Score=57.55 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
++|.++|+|||||||+|+.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 47999999999999999999764
No 388
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.10 E-value=1.1 Score=46.57 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+-+++++|-+|+||||+++.+.+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44789999999999999999998876
No 389
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.08 E-value=0.051 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.5
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhc
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
|+++|-||+||||+.+++.+.|...
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHhhcc
Confidence 7899999999999999999999543
No 390
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.094 Score=58.25 Aligned_cols=49 Identities=27% Similarity=0.309 Sum_probs=36.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHh-------hcCCceEEEechhhHHHhhCC
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR-------WLGHDTKHFNVGKYRRLKHGV 397 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~-------~~gi~tdv~~~ddyRr~~~g~ 397 (707)
.+.-++.++|-.||||||+++.|.--.. |.|-.++--+.++||++....
T Consensus 347 krGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSav 402 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAV 402 (546)
T ss_pred ecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHH
Confidence 3566899999999999999999874332 445555556678999976543
No 391
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.07 E-value=0.046 Score=53.13 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=21.7
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
...+.+++++|.+|+|||++.+++.+++...
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4457899999999999999999999888765
No 392
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=94.06 E-value=0.7 Score=45.31 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.++.-|+++|.+|+||||+..+|...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35567899999999999999998754
No 393
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.06 E-value=0.12 Score=58.30 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=27.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
|.-|+|+|.||+|||++|+.|++.++...+..+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 567999999999999999999999765544443
No 394
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.05 E-value=0.32 Score=58.64 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=33.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh-hcC-CceEEEechhhH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLG-HDTKHFNVGKYR 391 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~-~~g-i~tdv~~~ddyR 391 (707)
++.+|.|+|..|+||||+..+|+.++. ..| .++-++..|.||
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 367999999999999999999998773 444 466677777776
No 395
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.04 E-value=0.61 Score=53.82 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.|.-++|+|-||+|||++|++|+..++
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 344589999999999999999998864
No 396
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.091 Score=60.11 Aligned_cols=259 Identities=17% Similarity=0.168 Sum_probs=120.4
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCC--------------C-CCCCCCCCHHHH-
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ--------------S-ADFFRADNPEGM- 412 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~--------------~-~~f~~~~~e~~~- 412 (707)
.-|.=|+|+|.||+|||-|||++|-. .++.-...++.++..+..|.+. . ..|.++-..-+-
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGE---A~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~k 411 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGE---AGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGK 411 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcc---cCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhccc
Confidence 44677999999999999999999954 5555544444444444333211 1 112221111010
Q ss_pred --HHHHHHHHHHHHHHHHHHh---cCCeEEEEeCCCCCHHHHHHHHHH--HcCCceEEEEEEEeCC----HHHHHHHHHH
Q 005233 413 --EARNEVAALAMEDMISWMH---EGGQVGIFDATNSSRKRRNMLMKM--AEGNCKIIFLETICND----RDIIERNIRL 481 (707)
Q Consensus 413 --~~~~~vA~~~l~d~~~~L~---~~G~vVIlDAtn~~~e~R~~l~~l--~~~~~~vifIE~~c~d----~e~i~~rI~~ 481 (707)
..-...+++.+.+++.-|. .+-.++|+.|||.-.. +-.. ....+...+ .+-.+| .++++.-+.+
T Consensus 412 R~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~----LD~AL~RPGRFD~~v-~Vp~PDv~GR~eIL~~yl~k 486 (752)
T KOG0734|consen 412 RNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA----LDKALTRPGRFDRHV-TVPLPDVRGRTEILKLYLSK 486 (752)
T ss_pred CCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhh----hhHHhcCCCccceeE-ecCCCCcccHHHHHHHHHhc
Confidence 0011255555555555442 3345666689986432 2222 222232222 111111 1234443332
Q ss_pred hh-----------hcCCCCCCCCChHHHHHHHHHHHHhhhhhccCCCCC--------CeeEE-eecccCCccceeee---
Q 005233 482 KI-----------QQSPDYAEEPDFEAGLQDFKNRLANYEKVYEPVDEG--------SYIKM-IDMVSGHGGQIQVN--- 538 (707)
Q Consensus 482 r~-----------~~~pd~s~~~d~e~a~~df~~Ri~~y~~~yEpl~e~--------~yik~-in~~~~~g~~~~~n--- 538 (707)
.. +..|.|+++ |.+-+ -++.+.|-.++.. .|-|- |=+..-.-..++-+
T Consensus 487 i~~~~~VD~~iiARGT~GFsGA-dLaNl--------VNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak 557 (752)
T KOG0734|consen 487 IPLDEDVDPKIIARGTPGFSGA-DLANL--------VNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAK 557 (752)
T ss_pred CCcccCCCHhHhccCCCCCchH-HHHHH--------HHHHHHHHHhcCcccccHHHHhhhhhheeecccccccccChhhh
Confidence 21 123456655 44433 3444444444421 23321 11200000122221
Q ss_pred cccccCC--cccccccccccCCCceEEEeccccccccCCCCcCCCCCCCHHHHHHHHH-----HHHHHHHHh--cCCCCC
Q 005233 539 NISGYLP--GRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKK-----LANFVEKRL--KSERAA 609 (707)
Q Consensus 539 ~i~gyL~--~rIvf~L~N~~~~~~~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~-----Lg~~L~~~l--~~~~~d 609 (707)
.+..|.- +.|+.+-++-.+...+..++-.|.+..-....-.-| =+..-++|..+ +|-..++.+ ..-++.
T Consensus 558 ~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D--~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iT 635 (752)
T KOG0734|consen 558 KITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKD--RYSITKAQLLARLDVCMGGRVAEELIFGTDKIT 635 (752)
T ss_pred hhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccc--hhhHHHHHHHHHHHHhhcchHHHHHhccCCccc
Confidence 2455654 557777666666667777887787755322111101 11112233221 122222221 122344
Q ss_pred EEEEcCcHHHHHHHHHh
Q 005233 610 SIWTSTLQRTILTASPI 626 (707)
Q Consensus 610 ~I~TSPl~RAiQTA~~i 626 (707)
.=-+|++.-|.++|...
T Consensus 636 sGAssDl~qAT~lA~~M 652 (752)
T KOG0734|consen 636 SGASSDLDQATKLARRM 652 (752)
T ss_pred ccccchHHHHHHHHHHH
Confidence 44689999999999998
No 397
>COG4240 Predicted kinase [General function prediction only]
Probab=94.03 E-value=0.079 Score=54.93 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=37.7
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcC-CceEEEechhh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKY 390 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g-i~tdv~~~ddy 390 (707)
..+|+++-++|--||||||+|-.|.+.|...+ .++-.++.||.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 34699999999999999999999999999888 57878888765
No 398
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.02 E-value=0.67 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-++|+|-||+||||+|+.+++.+.
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 468899999999999999998754
No 399
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.02 E-value=0.21 Score=54.23 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
..-++++.||+|||||||.|.|-+-.
T Consensus 53 ~GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 53 EGEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred CCeEEEEEecCCCCHHHHHHHHhccC
Confidence 35688889999999999999988644
No 400
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.00 E-value=0.16 Score=56.61 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=34.7
Q ss_pred hcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 341 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
|++++-.-...-++++.|-||+||||++.+++..+...+.++-.++..
T Consensus 72 D~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 72 DRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred HHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 444443323456999999999999999999998877666566555543
No 401
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.00 E-value=0.087 Score=49.93 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=18.5
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~ 374 (707)
|+++|.+|+||||+..++...
T Consensus 2 i~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 689999999999999998643
No 402
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.99 E-value=0.074 Score=49.33 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.4
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~ 374 (707)
|+++|.||+||||+...|...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988643
No 403
>PRK06321 replicative DNA helicase; Provisional
Probab=93.98 E-value=0.57 Score=53.91 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=64.8
Q ss_pred hcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhH----HHhhCCCCC---CCCC-CCCCHHH
Q 005233 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR----RLKHGVNQS---ADFF-RADNPEG 411 (707)
Q Consensus 341 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~ddyR----r~~~g~~~~---~~f~-~~~~e~~ 411 (707)
|.+.+ .-...-+|++.|-||.|||++|-.|+..... .+..+-+|+..--. .++...... ..+. ..-.+..
T Consensus 217 D~~t~-Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e 295 (472)
T PRK06321 217 DKMIN-GFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRD 295 (472)
T ss_pred HHHhc-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHH
Confidence 44444 2235679999999999999999999987642 36666677664221 111111110 1111 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 005233 412 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (707)
Q Consensus 412 ~~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~-e~R~~l~~l-~~~~~~vifIE 466 (707)
+..+.+.+. .|.+ ....|-|..+.+. +-|..++.+ .++++++++|+
T Consensus 296 ~~~~~~a~~--------~l~~-~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvID 343 (472)
T PRK06321 296 FQRIVSVVN--------EMQE-HTLLIDDQPGLKITDLRARARRMKESYDIQFLIID 343 (472)
T ss_pred HHHHHHHHH--------HHHc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 332222222 2332 3455656666554 457888887 66788888886
No 404
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.96 E-value=0.49 Score=54.65 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+-.++|+|-||+||||+|+.|++.|.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHc
Confidence 55799999999999999999999875
No 405
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.94 E-value=0.38 Score=47.57 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
+..-|+++|++|+||||+...|..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999988874
No 406
>PRK08760 replicative DNA helicase; Provisional
Probab=93.92 E-value=0.49 Score=54.44 Aligned_cols=109 Identities=19% Similarity=0.183 Sum_probs=62.3
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhH-----HHhhCCC-CC-CCCCC-CCCHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR-----RLKHGVN-QS-ADFFR-ADNPEGMEARNEVA 419 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~ddyR-----r~~~g~~-~~-~~f~~-~~~e~~~~~~~~vA 419 (707)
.+.-+|++.|-||.|||++|-.++..... .+..+-+|+...-. |...... .+ ..+.. .-..+.+..+.+.+
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~ 306 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAI 306 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHH
Confidence 45679999999999999999999987653 36677777664221 2111110 00 00110 11222222222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 005233 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 466 (707)
Q Consensus 420 ~~~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~~~~vifIE 466 (707)
..|.+ -...|.|..+.+.+ -|..++.+ .+.++.+++|+
T Consensus 307 --------~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvID 346 (476)
T PRK08760 307 --------KMLKE-TKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVID 346 (476)
T ss_pred --------HHHhc-CCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 22332 45667777666655 47777777 66778888886
No 407
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.88 E-value=0.5 Score=49.03 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=27.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (707)
.-++++.|.||+||||+|.+++..+-..+.++..++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 449999999999999999777665544555555553
No 408
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=93.85 E-value=0.17 Score=52.14 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=59.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC--C-------CCCCCC-CHHHHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--A-------DFFRAD-NPEGMEARNEVAAL 421 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~--~-------~f~~~~-~e~~~~~~~~vA~~ 421 (707)
.|++++|-+|+|||.+|-.|++.+++..+..|.+ --|+.+..+.+.. . .|..+- =.++.- -.+-|..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri--q~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i-~a~ea~~ 78 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI--QCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGII-NAEEAHE 78 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG--GG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce--ecccccccccCCCCHHHHcccceeeeccccccCCCc-CHHHHHH
Confidence 3789999999999999999999988765554433 2244433332211 0 111110 000100 0111222
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-----HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 422 ~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-----~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
.|-+.+..+.. +..+|+-+... ..+.+| -..++.+...-...+|++....++.+|.+
T Consensus 79 ~Li~~v~~~~~-~~~~IlEGGSI-----SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~ 140 (233)
T PF01745_consen 79 RLISEVNSYSA-HGGLILEGGSI-----SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVR 140 (233)
T ss_dssp HHHHHHHTTTT-SSEEEEEE--H-----HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-cCceEEeCchH-----HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence 22223333444 66778766553 344444 22567777777778888877777766654
No 409
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.84 E-value=0.078 Score=50.26 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.5
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~ 374 (707)
|+++|.+|+|||++..++...
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 688999999999999998743
No 410
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.84 E-value=0.43 Score=52.24 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=29.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+..++.+.|-|||||||||-.++......+-.+-.++.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 46688999999999999999998776555555555544
No 411
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=93.78 E-value=0.033 Score=68.02 Aligned_cols=32 Identities=25% Similarity=0.193 Sum_probs=27.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCce
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~t 382 (707)
+++|.+.|.|||||||+|+.|+++|++..+++
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~~~ 65 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNT 65 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 46999999999999999999999988754443
No 412
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.75 E-value=1.4 Score=50.34 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=28.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~ddy 390 (707)
++++|-||+|||+|+++++.++... +.++..++..++
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 8999999999999999999988654 345555555443
No 413
>PRK05595 replicative DNA helicase; Provisional
Probab=93.72 E-value=0.65 Score=52.86 Aligned_cols=109 Identities=16% Similarity=0.178 Sum_probs=62.6
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhH-----HHhhCCC-CC-CCCCC-CCCHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR-----RLKHGVN-QS-ADFFR-ADNPEGMEARNEVA 419 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~ddyR-----r~~~g~~-~~-~~f~~-~~~e~~~~~~~~vA 419 (707)
.+.-+|++.|-||.|||++|-.++..+. ..|.++-+|+..--. |...... .+ ..+.. .-.+..+..+.+.+
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~ 278 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARAS 278 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3466999999999999999999998765 347777777664221 1111110 01 01110 11222222222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 005233 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 466 (707)
Q Consensus 420 ~~~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~~~~vifIE 466 (707)
. .+.+ ....|.|..+.+.. -|..++.+ .++++.+++|+
T Consensus 279 ~--------~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvID 318 (444)
T PRK05595 279 G--------PLAA-AKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILID 318 (444)
T ss_pred H--------HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1 2322 45677777777654 57777777 66788888886
No 414
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.71 E-value=0.32 Score=51.83 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=24.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.|..+++.|.||+||||+|..|++.|.
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 344899999999999999999999986
No 415
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=93.68 E-value=0.49 Score=45.72 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
|+++|.+|+||||+...|.....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcC
Confidence 78899999999999999987644
No 416
>PRK08006 replicative DNA helicase; Provisional
Probab=93.67 E-value=0.79 Score=52.72 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=63.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechh----h-HHHhhCCCC-C-CCCC-CCCCHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGK----Y-RRLKHGVNQ-S-ADFF-RADNPEGMEARNEVAA 420 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~dd----y-Rr~~~g~~~-~-~~f~-~~~~e~~~~~~~~vA~ 420 (707)
+.-+|++.|-||.|||++|-.|+.... ..+..+-+|+..- . .|.+..... + ..+. ..-+++.+..+...+.
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~ 302 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMG 302 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 567999999999999999999987764 3466676776641 1 122211111 0 1111 1123333333333332
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 005233 421 LAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 466 (707)
Q Consensus 421 ~~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~-~~~vifIE 466 (707)
..+. .-...|.|..+.+.. -|..++.+ .++ ++.+++|+
T Consensus 303 ~~~~--------~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID 343 (471)
T PRK08006 303 ILLE--------KRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMID 343 (471)
T ss_pred HHHh--------cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 2212 345777787777764 57777776 444 68888886
No 417
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.67 E-value=0.49 Score=48.08 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=23.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
...++.++|-||+|||++|..++....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 466999999999999999999987643
No 418
>PF13245 AAA_19: Part of AAA domain
Probab=93.65 E-value=0.11 Score=44.65 Aligned_cols=25 Identities=36% Similarity=0.301 Sum_probs=18.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-++++.|.||||||+++..+..++-
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688899999999966655555544
No 419
>PRK09165 replicative DNA helicase; Provisional
Probab=93.65 E-value=0.74 Score=53.30 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=62.3
Q ss_pred hcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhc---------------CCceEEEechhhH-----HHhhCC-CC
Q 005233 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWL---------------GHDTKHFNVGKYR-----RLKHGV-NQ 399 (707)
Q Consensus 341 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~---------------gi~tdv~~~ddyR-----r~~~g~-~~ 399 (707)
|.+.+. -.+.-+|++.|-||.|||++|-.++...... |..+-+|+...-. |.+... +-
T Consensus 208 D~~~gG-~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v 286 (497)
T PRK09165 208 DSKLGG-LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEI 286 (497)
T ss_pred hhhcCC-CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCC
Confidence 444442 2356699999999999999998887665321 4455566553221 111110 11
Q ss_pred C-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcCCceEEEEE
Q 005233 400 S-ADFFR-ADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEGNCKIIFLE 466 (707)
Q Consensus 400 ~-~~f~~-~~~e~~~~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~~~~vifIE 466 (707)
+ ..+.. .-.++.+..+.+.+.. +. .....|-|....+.. -|..++.+ .++++.+++|+
T Consensus 287 ~~~~i~~~~l~~~e~~~l~~a~~~--------l~-~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvID 348 (497)
T PRK09165 287 SSSKIRRGKISEEDFEKLVDASQE--------LQ-KLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVD 348 (497)
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHH--------Hh-cCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 00110 1122223222222222 22 245666666666654 57777777 66788888886
No 420
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.63 E-value=0.15 Score=58.22 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=34.2
Q ss_pred hcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 341 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
|.+++-.-...-++++.|-||+||||++.+++..+...+.++-.++.
T Consensus 84 D~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~ 130 (454)
T TIGR00416 84 DRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG 130 (454)
T ss_pred HHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 44444333356689999999999999999998877665556555554
No 421
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.63 E-value=0.055 Score=51.13 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.7
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar 373 (707)
-|+++|.||+||||+.++|..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999874
No 422
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.69 Score=51.74 Aligned_cols=170 Identities=22% Similarity=0.348 Sum_probs=95.7
Q ss_pred ccCCCccccccccceecccccccCCCcccccc-ccceecccCCCCceecccccccc-----cccccccccccCCCC----
Q 005233 259 SVPDPSKVYSSSGMVESKSVGTFSPLQKQDSH-RGLFVDRGVGSPRLVKSASASTF-----NIDLKLDTETKNSMP---- 328 (707)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~r~ss~~~~-----~~~~~~~~~~~~~~p---- 328 (707)
.+.|-.|+.-..|-+---.+|.|+. +.... -+-|+|+--|-|.|.|-||-+.| .+.+.........+.
T Consensus 274 ~ltD~~Kli~tVgGlTaLAaGvYTt--keg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk 351 (630)
T KOG0742|consen 274 FLTDWNKLIATVGGLTALAAGVYTT--KEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGK 351 (630)
T ss_pred HhhhhHhHHHHhhhHHHHHhhheec--cccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCC
Confidence 4456667776667677777777776 22222 25688888999999999885222 211111111111000
Q ss_pred C-ccchhhHH-------hhhhcccCCC-CCCcE-EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCC
Q 005233 329 A-AAGAVAAA-------AVADQMLGPK-EHRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVN 398 (707)
Q Consensus 329 ~-~~~~~a~~-------~~~~~~~~~~-~~~~~-lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~ 398 (707)
. -.+-+-.+ .++..+..++ ++.|+ -|+|.|.||+|||-+|+.|+++ -|.+--++.+||+-
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~---SGlDYA~mTGGDVA------- 421 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARH---SGLDYAIMTGGDVA------- 421 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhh---cCCceehhcCCCcc-------
Confidence 0 01111112 2222333333 55565 6899999999999999999988 56666666665551
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC--CeEEEEeC----------CCCCHHHHHHHHHH
Q 005233 399 QSADFFRADNPEGMEARNEVAALAMEDMISWMHEG--GQVGIFDA----------TNSSRKRRNMLMKM 455 (707)
Q Consensus 399 ~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~~--G~vVIlDA----------tn~~~e~R~~l~~l 455 (707)
+-... +-..+..+.+|-++. |..+.+|- |......|..+..+
T Consensus 422 -------PlG~q--------aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAl 475 (630)
T KOG0742|consen 422 -------PLGAQ--------AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNAL 475 (630)
T ss_pred -------ccchH--------HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHH
Confidence 11121 122334455666543 77777763 33455677777666
No 423
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=93.62 E-value=0.33 Score=46.13 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
+|+++|.+|+||||+..+|...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhc
Confidence 5899999999999999999754
No 424
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=93.60 E-value=0.094 Score=52.00 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+++++|+.||||||+-+.|.+ ....+.+.-++
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence 789999999999999999997 44556666665
No 425
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.56 E-value=0.53 Score=50.65 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=27.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcC--CceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~g--i~tdv~~~ddy 390 (707)
.++++|-||+||||+|+.+++.+...+ .+...++..++
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 367999999999999999999986433 22344555443
No 426
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.56 E-value=0.23 Score=55.84 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.|.-|+|.|.||+|||++|++++..+..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~ 205 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTA 205 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4567889999999999999999987543
No 427
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=0.6 Score=45.72 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.-++.++|.+|+||||+.+.|+-.+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45899999999999999999997664
No 428
>COG3911 Predicted ATPase [General function prediction only]
Probab=93.54 E-value=1.4 Score=43.20 Aligned_cols=34 Identities=38% Similarity=0.417 Sum_probs=27.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+-.++|++|-||+|||||-++|++. |.-+...-.
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~----Gfatvee~~ 41 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARA----GFATVEEAG 41 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHc----Cceeeccch
Confidence 3468999999999999999999975 666655544
No 429
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=93.49 E-value=0.16 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~ 374 (707)
|+++|.+|+|||||..++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998754
No 430
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.48 E-value=0.6 Score=47.74 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=27.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+.-++++.|-||+||||+|.+++...-..+-.+-.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~i 54 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYV 54 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEE
Confidence 467999999999999999998875443345555444
No 431
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.47 E-value=0.45 Score=55.18 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=24.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-+++|+|-||+||||+|+.|++.+.-
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4567899999999999999999999863
No 432
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.46 E-value=1.3 Score=49.67 Aligned_cols=42 Identities=31% Similarity=0.269 Sum_probs=32.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEechhhHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKYRR 392 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~ddyRr 392 (707)
+.+|+|+|..|.||||.-.+||.++. ....++-++..|.||=
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 77999999999999876666665554 4456777888898864
No 433
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.45 E-value=0.73 Score=51.65 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=30.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~ddy 390 (707)
.+++.|-||+|||+|+++++.++... +..+..++..++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 47889999999999999999988654 556666666554
No 434
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.44 E-value=0.22 Score=49.67 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=59.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC--CCCCCCCCH--HHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNP--EGMEARNEVAALAMEDM 426 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~--~~f~~~~~e--~~~~~~~~vA~~~l~d~ 426 (707)
...++++|-+||||||+.+.|...+.... ....+ .+...... .... .-.+..... .......+..+.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~i--ed~~E~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--- 97 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDE-RIITI--EDTAELQL-PHPNWVRLVTRPGNVEGSGEVTMADLLRSAL--- 97 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEE--CCccccCC-CCCCEEEEEEecCCCCCCCccCHHHHHHHHh---
Confidence 45899999999999999999998765322 22222 22221111 0000 000111100 00011122222222
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 427 ~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
......+|++=.-. .+-.+.+. ....|..-.+--+++.+....-+|+.....
T Consensus 98 ----R~~pd~i~igEir~-~ea~~~~~-a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~ 149 (186)
T cd01130 98 ----RMRPDRIIVGEVRG-GEALDLLQ-AMNTGHPGGMTTIHANSAEEALTRLELLPS 149 (186)
T ss_pred ----ccCCCEEEEEccCc-HHHHHHHH-HHhcCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 23455666654443 34444333 344555434556677887777777776544
No 435
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.43 E-value=0.15 Score=58.94 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
|.=|+|.|.||+|||++|++++..|...
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4458999999999999999999998654
No 436
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.43 E-value=1.8 Score=47.96 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=29.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcC--CceEEEec
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHFNV 387 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g--i~tdv~~~ 387 (707)
..+-.++++|.||+|||++++.+.+.+...+ +....++.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~ 93 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC 93 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC
Confidence 3455678999999999999999999886543 44444443
No 437
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.40 E-value=0.57 Score=51.58 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=23.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
|.+|++.|-||||||.||-.|++.|
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHh
Confidence 4589999999999999999999998
No 438
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.40 E-value=1.2 Score=53.88 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.|.-|+|.|.||+|||++|++|+..++.
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~ 513 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGA 513 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3455889999999999999999988653
No 439
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.39 E-value=0.8 Score=44.94 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.-++.++|..||||||+.+.|+..+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999987653
No 440
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=93.36 E-value=0.089 Score=53.83 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=34.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+++++|-+|+||||++..|+..+...|.++-+++.|--
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~ 38 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPA 38 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 47899999999999999999999999999999987643
No 441
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.35 E-value=0.1 Score=55.81 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+|.++|.+|||||||+..|.+.|...| ++-++
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 799999999999999999999999888 65555
No 442
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.34 E-value=0.66 Score=54.08 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-.++|+|-||+||||+|+.|++.|.-
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3457899999999999999999999863
No 443
>PRK08506 replicative DNA helicase; Provisional
Probab=93.33 E-value=0.71 Score=53.10 Aligned_cols=108 Identities=11% Similarity=0.144 Sum_probs=61.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH-----HHhhCCCC-C-CCCC-CCCCHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR-----RLKHGVNQ-S-ADFF-RADNPEGMEARNEVAAL 421 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR-----r~~~g~~~-~-~~f~-~~~~e~~~~~~~~vA~~ 421 (707)
+.-+|++.|-||.|||++|-.++...-..+..+-+|+..--. |....... + ..+. ..-++..+..+.+.+.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~- 269 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACD- 269 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH-
Confidence 456999999999999999999998765556677777664221 11111000 0 0010 1112222222222222
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 005233 422 AMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 466 (707)
Q Consensus 422 ~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~-~~~vifIE 466 (707)
.+.+ ....|.|..+.+.. -|..++.+ .++ ++.+++|+
T Consensus 270 -------~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvID 309 (472)
T PRK08506 270 -------ELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVID 309 (472)
T ss_pred -------HHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 2332 45777777777665 47777777 433 57888886
No 444
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.33 E-value=0.096 Score=60.14 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=33.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh-cC-CceEEEechhhH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVGKYR 391 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~g-i~tdv~~~ddyR 391 (707)
++.+|.|+|..|+||||++.+|+.++.. .| .++-++..|.||
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 4579999999999999999999988743 33 466677777764
No 445
>PRK05748 replicative DNA helicase; Provisional
Probab=93.30 E-value=0.87 Score=51.85 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=61.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEech----hhH-HHhhCCCC-CCC-CC-CCCCHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVG----KYR-RLKHGVNQ-SAD-FF-RADNPEGMEARNEVA 419 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~d----dyR-r~~~g~~~-~~~-f~-~~~~e~~~~~~~~vA 419 (707)
.+.-+|++.|-||.|||++|-.++..... .+..+-+|+.. +.. |....... +.. +. ..-....+..+.+.+
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~ 280 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAM 280 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 35679999999999999999999987653 46677777653 222 22111111 100 10 011222222222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 005233 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 466 (707)
Q Consensus 420 ~~~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~-~~~vifIE 466 (707)
. .+.+ ....|.|..+.+.. -|..++.+ .++ ++++++|+
T Consensus 281 ~--------~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvID 321 (448)
T PRK05748 281 G--------SLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILID 321 (448)
T ss_pred H--------HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 2 2332 44666666666654 57777777 555 78888886
No 446
>PHA02542 41 41 helicase; Provisional
Probab=93.29 E-value=0.8 Score=52.73 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=36.3
Q ss_pred hcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 341 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
|.+.+..-.+.-+|++.|-||.||||+|-.++......|.++-+|+..
T Consensus 180 D~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLE 227 (473)
T PHA02542 180 NKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISME 227 (473)
T ss_pred HHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 445522334567999999999999999999998876567777777664
No 447
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.29 E-value=0.56 Score=55.32 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=24.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-+-.++|+|-||+||||+|+.|++.|.
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355789999999999999999999985
No 448
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.26 E-value=1.4 Score=52.11 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=25.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-.++|+|-+|+||||+|+.|++.|..
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4568899999999999999999999874
No 449
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.23 E-value=0.78 Score=54.49 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-.++|+|.||+||||+|+.|++.|..
T Consensus 37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457999999999999999999999875
No 450
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=93.22 E-value=0.46 Score=51.70 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=71.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCC---------CC---CCCCCCCCHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVN---------QS---ADFFRADNPEGMEARNE 417 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~---------~~---~~f~~~~~e~~~~~~~~ 417 (707)
+-.||++.|-.|+|||-||-.||.+++...|++|-+-. |.-.-...+ .. .+......+.+....+.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQv--YkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~ 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQV--YKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceee--ecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence 45799999999999999999999987665555543311 111000000 01 22333333444555556
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH-----H-----------HcCCceEEEEEEEeCCHHHHHHHHHH
Q 005233 418 VAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMK-----M-----------AEGNCKIIFLETICNDRDIIERNIRL 481 (707)
Q Consensus 418 vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~-----l-----------~~~~~~vifIE~~c~d~e~i~~rI~~ 481 (707)
.|..+.+++. +.+..++|+-++|..-+. .+.+ . .+..+...||.+.+ ++.++.+++.+
T Consensus 84 ~a~~aie~I~---~rgk~PIv~GGs~~yi~a--l~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda-~~~VL~~~l~~ 157 (348)
T KOG1384|consen 84 DASRAIEEIH---SRGKLPIVVGGSNSYLQA--LLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDA-DQAVLFERLDK 157 (348)
T ss_pred HHHHHHHHHH---hCCCCCEEeCCchhhHHH--HhhcCCCcccCcccccCCCCCcccccceEEEEEec-chHHHHHHHHH
Confidence 6665555332 345567777888865321 1111 0 01125566777666 57888888887
Q ss_pred hh
Q 005233 482 KI 483 (707)
Q Consensus 482 r~ 483 (707)
|.
T Consensus 158 RV 159 (348)
T KOG1384|consen 158 RV 159 (348)
T ss_pred HH
Confidence 75
No 451
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.22 E-value=0.59 Score=50.57 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=59.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-DFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~-~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
+..|+++|-+||||||++++|.+++........++...|.+..... .... .+...... ..+.++.+.+|+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~-~~~~v~~~~~~~~---~~~~~~l~~aLR----- 202 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCA-APNVVQLRTSDDA---ISMTRLLKATLR----- 202 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCC-CCCEEEEEecCCC---CCHHHHHHHHhc-----
Confidence 3468899999999999999999887642112233434555543221 1111 11111111 023334444433
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r 482 (707)
..-..+|+.=.-.. +--+.+ +....|..-.+--+++++....-.|+..-
T Consensus 203 --~~pD~iivGEiR~~-ea~~~l-~a~~tGh~G~~tTiHa~~~~~ai~Rl~~l 251 (299)
T TIGR02782 203 --LRPDRIIVGEVRGG-EALDLL-KAWNTGHPGGIATIHANNAKAALDRLEQL 251 (299)
T ss_pred --CCCCEEEEeccCCH-HHHHHH-HHHHcCCCCeEEeeccCCHHHHHHHHHHH
Confidence 34556666555443 332332 33344443234455677766555666543
No 452
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.19 E-value=0.31 Score=49.84 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=27.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~ 387 (707)
++-++++.|-||+|||++|.+++..--.. |-++-.++.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 45699999999999999999877544334 767666643
No 453
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.17 E-value=1.1 Score=52.93 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=30.0
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh--cCCceEEEechhh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~--~gi~tdv~~~ddy 390 (707)
++|+|-+|+|||+|+++++.++.. .+.++..++..++
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 799999999999999999998864 3666766766444
No 454
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.14 E-value=1.1 Score=44.23 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=22.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.-++.++|..|+|||||.+.|+..+.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999986543
No 455
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.11 E-value=0.098 Score=53.04 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=25.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+++.+|.++|++||||||+...|.+.+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988765
No 456
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=93.11 E-value=0.17 Score=54.68 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=50.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech---hhHHHhhCCCCC------------CCCCCCCCHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG---KYRRLKHGVNQS------------ADFFRADNPEGMEAR 415 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d---dyRr~~~g~~~~------------~~f~~~~~e~~~~~~ 415 (707)
+.+|+++|..|||||.||-.||++. ..++|.| -||.+-.|.... -++-+....-.....
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~------~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f 77 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGK------AEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIF 77 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC------CcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHH
Confidence 3489999999999999999999882 2455554 244332332211 123333333334445
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Q 005233 416 NEVAALAMEDMISWMHEGGQVGIFDATNSS 445 (707)
Q Consensus 416 ~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~ 445 (707)
.+.|..+++++ +..+..++|+-+|...
T Consensus 78 ~~~a~~~i~~i---~~~gk~PilvGGTglY 104 (300)
T PRK14729 78 YKEALKIIKEL---RQQKKIPIFVGGSAFY 104 (300)
T ss_pred HHHHHHHHHHH---HHCCCCEEEEeCchHH
Confidence 55555555533 3344557777777754
No 457
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.07 E-value=0.3 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+.-++-++|-+||||||+||.|.+-+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 345889999999999999999997654
No 458
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.07 E-value=0.26 Score=56.80 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
.|.-|+|+|.||+|||++|++++..++..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45668999999999999999999986644
No 459
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.05 E-value=0.2 Score=56.55 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+--|+|+|.||+|||++|+.|++.++
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC
Confidence 34799999999999999999998865
No 460
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.04 E-value=0.079 Score=59.54 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 346 PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 346 ~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+...+.-=|++.|-||+||||+|++||+++...|-=++.+
T Consensus 258 RL~eraeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTm 297 (604)
T COG1855 258 RLEERAEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTM 297 (604)
T ss_pred HHHhhhcceEEecCCCCChhHHHHHHHHHHHhcCcEEeec
Confidence 3333444588899999999999999999998887544433
No 461
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=92.99 E-value=0.14 Score=56.85 Aligned_cols=36 Identities=25% Similarity=0.138 Sum_probs=32.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
.+.+|.++|.|||||||+..+|.+.|...|+++-++
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~i 239 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLI 239 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 466999999999999999999999999988888777
No 462
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.99 E-value=0.11 Score=49.09 Aligned_cols=28 Identities=32% Similarity=0.209 Sum_probs=24.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
...+|+|.|=-|+||||++|.|++.|+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4679999999999999999999999863
No 463
>PRK10536 hypothetical protein; Provisional
Probab=92.98 E-value=0.94 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
+++++|-+|+|||+||.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999999874
No 464
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.97 E-value=0.86 Score=53.94 Aligned_cols=28 Identities=39% Similarity=0.453 Sum_probs=24.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-+-.++|+|-+|+||||+|+.|++.|.-
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 3557999999999999999999999864
No 465
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.28 Score=57.08 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=24.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.|.=|++.|.||+|||.||++|+..|+.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~v 249 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGV 249 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCC
Confidence 3455899999999999999999999763
No 466
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.92 E-value=0.069 Score=50.84 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=18.2
Q ss_pred EEEEccCCCChHHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar 373 (707)
|+++|.||+|||||.+++..
T Consensus 3 i~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78889999999999999874
No 467
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=0.78 Score=52.18 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=38.1
Q ss_pred ccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 343 MLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 343 ~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
+..+.+.+|++|.+||.-|.||||--.+|+=.|-...+++-+.--|.+|
T Consensus 370 ~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFR 418 (587)
T KOG0781|consen 370 MSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFR 418 (587)
T ss_pred HHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchh
Confidence 4455677999999999999999998888887777667776665445444
No 468
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.89 E-value=0.88 Score=44.80 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.-++.++|.+||||||+.+.|+..+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999997654
No 469
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.89 E-value=0.84 Score=45.77 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
..-++.++|.+|||||||.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999765
No 470
>PTZ00369 Ras-like protein; Provisional
Probab=92.88 E-value=0.067 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=19.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
..=|+++|.+|+|||||..++..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~ 27 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQ 27 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34578889999999999988764
No 471
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.86 E-value=0.51 Score=48.21 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=28.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+.-++++.|-||+|||++|.+++...-..+..+-.++.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35688889999999999999998654334555555543
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.84 E-value=0.81 Score=50.36 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=58.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFR-ADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~-~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
.-+|+++|-+||||||+.+.|.+++.... ...++...+-..... ......+.. +.+.. .....+..+.++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~-~~~i~tiEdp~E~~~-~~~~~~i~q~evg~~-~~~~~~~l~~~l------ 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNA-AGHIITIEDPIEYVH-RNKRSLINQREVGLD-TLSFANALRAAL------ 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCC-CCEEEEEcCChhhhc-cCccceEEccccCCC-CcCHHHHHHHhh------
Confidence 45899999999999999999998876432 122222222211111 000000100 01100 011222222222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHH
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIR 480 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~ 480 (707)
...-.++++|=.... +.-..+...+..|.. ++--+++.+....-.|+.
T Consensus 193 -r~~pd~i~vgEird~-~~~~~~l~aa~tGh~-v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 193 -REDPDVILIGEMRDL-ETVELALTAAETGHL-VFGTLHTNSAAQTIERII 240 (343)
T ss_pred -ccCCCEEEEeCCCCH-HHHHHHHHHHHcCCc-EEEEEcCCCHHHHHHHHH
Confidence 235678888877633 333333444555654 566667766655555554
No 473
>PRK06851 hypothetical protein; Provisional
Probab=92.82 E-value=0.14 Score=56.95 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=31.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
...+++|.|.||+||||+.++|.+.+...|.++..+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 567899999999999999999999998778777766
No 474
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.82 E-value=0.71 Score=54.88 Aligned_cols=25 Identities=32% Similarity=0.382 Sum_probs=23.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.++|+|-||+||||+|+.|++.|.-
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHHhcC
Confidence 6899999999999999999999863
No 475
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.81 E-value=0.77 Score=52.49 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=24.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-+-.++|+|-||+||||+|+.+++.+.
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999999985
No 476
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=92.79 E-value=0.37 Score=55.41 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=54.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCc----eEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD----TKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~----tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d 425 (707)
.|+++.++|.||+|||||-+.|.+++...-++ ...+..|+.||+. |..-. .-...+-++|+.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiT--------flEcp--~Dl~~miDvaKIa--- 134 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRIT--------FLECP--SDLHQMIDVAKIA--- 134 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEE--------EEeCh--HHHHHHHhHHHhh---
Confidence 57788899999999999999999987533221 1223345666633 22111 1233344555542
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce
Q 005233 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK 461 (707)
Q Consensus 426 ~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~ 461 (707)
.=....+|+.+...-.--.+..+ ..+|.+
T Consensus 135 -------DLVlLlIdgnfGfEMETmEFLnil~~HGmP 164 (1077)
T COG5192 135 -------DLVLLLIDGNFGFEMETMEFLNILISHGMP 164 (1077)
T ss_pred -------heeEEEeccccCceehHHHHHHHHhhcCCC
Confidence 12456678888876444444444 666654
No 477
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.79 E-value=0.14 Score=50.50 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=32.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
..++-++|..+||||||..+|.+.|...|++.-++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEE
Confidence 45889999999999999999999999999888776
No 478
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=92.77 E-value=0.44 Score=52.13 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
..|+++|-||+|||||++.|++.++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~ 188 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNT 188 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 37899999999999999999998653
No 479
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.76 E-value=0.19 Score=58.14 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+...+.++|-+||||||+++.|.+.+.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345799999999999999999997754
No 480
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.75 E-value=0.95 Score=43.29 Aligned_cols=90 Identities=18% Similarity=0.126 Sum_probs=51.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
.-++.++|.+|+||||+.+.|+..+.-..- ...++. .++ ..|..+ -..+.+.+..+|+.++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~~--~~~--------i~~~~~-lS~G~~~rv~laral~~------ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEG-IVTWGS--TVK--------IGYFEQ-LSGGEKMRLALAKLLLE------ 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECC--eEE--------EEEEcc-CCHHHHHHHHHHHHHhc------
Confidence 458899999999999999999876532111 111211 000 111111 11223444455555443
Q ss_pred hcCCeEEEEeCCCC--CHHHHHHHHHH-HcCCc
Q 005233 431 HEGGQVGIFDATNS--SRKRRNMLMKM-AEGNC 460 (707)
Q Consensus 431 ~~~G~vVIlDAtn~--~~e~R~~l~~l-~~~~~ 460 (707)
.-.++|+|-... ....+..+.++ .+.+.
T Consensus 88 --~p~illlDEP~~~LD~~~~~~l~~~l~~~~~ 118 (144)
T cd03221 88 --NPNLLLLDEPTNHLDLESIEALEEALKEYPG 118 (144)
T ss_pred --CCCEEEEeCCccCCCHHHHHHHHHHHHHcCC
Confidence 678999998764 45667777766 55444
No 481
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.75 E-value=1.4 Score=50.40 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=28.9
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
+++.|-||+|||||+++++..+...+.++..++.+
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 56789999999999999999987667776666553
No 482
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.71 E-value=1.5 Score=46.14 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
.|.=++++|-+||||||+...|-..+...-
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f 41 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKF 41 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccC
Confidence 567899999999999999999988776533
No 483
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.71 E-value=0.94 Score=44.75 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+.-++.++|.+||||||+.+.|+..+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999997653
No 484
>PRK08840 replicative DNA helicase; Provisional
Probab=92.70 E-value=1.4 Score=50.70 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=61.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechh----h-HHHhhCCCC-C-CCCCC-CCCHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGK----Y-RRLKHGVNQ-S-ADFFR-ADNPEGMEARNEVAA 420 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~dd----y-Rr~~~g~~~-~-~~f~~-~~~e~~~~~~~~vA~ 420 (707)
+.-+|++.|-||.|||++|-.|+.... ..+..+-+|+..- . .|++..... + ..+.. .-+.+.+..+.+.+.
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~ 295 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMG 295 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 567999999999999999988887764 2466676776641 1 121111110 0 01111 112333333322222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 005233 421 LAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 466 (707)
Q Consensus 421 ~~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~-~~~vifIE 466 (707)
++.+.....|.|..+.+.. -|..++.+ .++ ++.+++|+
T Consensus 296 --------~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvID 336 (464)
T PRK08840 296 --------ILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVD 336 (464)
T ss_pred --------HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 2322345777777776654 57777777 444 57888875
No 485
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=92.69 E-value=1.3 Score=41.35 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=18.2
Q ss_pred EEEEccCCCChHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLT 372 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~La 372 (707)
|+++|.+|+|||||.+.|.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 7899999999999999998
No 486
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.68 E-value=0.089 Score=55.55 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=23.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
-|++.|-||+|||++|+.|++.++ .....+
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg---~~~~~i 52 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD---RPVMLI 52 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC---CCEEEE
Confidence 356799999999999999998754 444444
No 487
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=92.67 E-value=0.4 Score=48.58 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
-|+++|++|+|||+|..+|...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~ 23 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTG 23 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 3789999999999999988753
No 488
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.67 E-value=0.095 Score=61.13 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=26.8
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
.++.+++|+|.||+||||||+.|++.|...
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 355699999999999999999999998765
No 489
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.62 E-value=0.057 Score=51.38 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=18.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
|+|-|.||.||||+|++|++.++.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 678999999999999999998764
No 490
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=92.61 E-value=0.18 Score=53.74 Aligned_cols=40 Identities=25% Similarity=0.251 Sum_probs=32.1
Q ss_pred CCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCc--eEEEe
Q 005233 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD--TKHFN 386 (707)
Q Consensus 347 ~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~--tdv~~ 386 (707)
..++|++|-++|-||+||||+|+.|+..|..-+-. ++++-
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvp 119 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVT 119 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEe
Confidence 37889999999999999999999999988644333 44443
No 491
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.60 E-value=0.55 Score=54.11 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=34.8
Q ss_pred hcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 341 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
|.+++..=.+.-++++.|-||+||||++.+++...-..|-++-.++.
T Consensus 253 D~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~ 299 (484)
T TIGR02655 253 DEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAY 299 (484)
T ss_pred HHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 44454444467799999999999999999998776556666665544
No 492
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.57 E-value=0.17 Score=54.48 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=36.2
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
..++.+|=++|.||+||||+--+|.+.|...|.++-++..|
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 44677999999999999999999999999999998888554
No 493
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=92.57 E-value=0.32 Score=47.34 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=18.8
Q ss_pred EEEEEEccCCCChHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLT 372 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~La 372 (707)
+=|+++|.+|+|||+|.++|.
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~ 30 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLK 30 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHc
Confidence 458899999999999998885
No 494
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.53 E-value=1 Score=49.38 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=25.4
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+.-+-.++++|.+|.||+++|+.+++.|.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 33466899999999999999999999985
No 495
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.52 E-value=0.16 Score=54.77 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=28.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
.+..+|.++|.||||||||...|.+.|... ..+-++
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEE
Confidence 457899999999999999999999887543 244444
No 496
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=92.52 E-value=0.38 Score=47.79 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.7
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
-|+++|-+++|||||..+|...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~ 25 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQ 25 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHH
Confidence 5899999999999999998863
No 497
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=92.52 E-value=0.12 Score=52.52 Aligned_cols=27 Identities=41% Similarity=0.377 Sum_probs=24.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
|+.|.++|.+||||||+.+.|.+.+..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 578999999999999999999988654
No 498
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=92.45 E-value=0.31 Score=47.86 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=55.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHH----hhcCCceEEEechhhH---HHhhCCCCCCCCCCC--CCHHHHHHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYL----RWLGHDTKHFNVGKYR---RLKHGVNQSADFFRA--DNPEGMEARNEVAALAM 423 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L----~~~gi~tdv~~~ddyR---r~~~g~~~~~~f~~~--~~e~~~~~~~~vA~~~l 423 (707)
-|.++|.|.+|||||-.+|...- +|.|.-.+.. .+.++ ....-.+ .+++|.- ..+ .+++++..+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~-~g~~~~~~~~~~lvD-lPG~ysl~~~s~-----ee~v~~~~l 74 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKK-EGIFKLGDQQVELVD-LPGIYSLSSKSE-----EERVARDYL 74 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEE-EEEEEETTEEEEEEE-----SSSSSSSH-----HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeee-eEEEEecCceEEEEE-CCCcccCCCCCc-----HHHHHHHHH
Confidence 37899999999999999997443 2455544422 11111 0000000 1222221 122 123333322
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEe
Q 005233 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETIC 469 (707)
Q Consensus 424 ~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c 469 (707)
. .=.-..-++|+||++..+. .....++.+.|.+++++--.+
T Consensus 75 ~----~~~~D~ii~VvDa~~l~r~-l~l~~ql~e~g~P~vvvlN~~ 115 (156)
T PF02421_consen 75 L----SEKPDLIIVVVDATNLERN-LYLTLQLLELGIPVVVVLNKM 115 (156)
T ss_dssp H----HTSSSEEEEEEEGGGHHHH-HHHHHHHHHTTSSEEEEEETH
T ss_pred h----hcCCCEEEEECCCCCHHHH-HHHHHHHHHcCCCEEEEEeCH
Confidence 2 0012367899999996544 345566688899988776443
No 499
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.43 E-value=0.72 Score=44.96 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.-++.++|.+|+|||||.+.|+..+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999986543
No 500
>PRK07004 replicative DNA helicase; Provisional
Probab=92.41 E-value=1.1 Score=51.34 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=61.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhh-----HHHhhCCCC-C-CCCC-CCCCHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKY-----RRLKHGVNQ-S-ADFF-RADNPEGMEARNEVA 419 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~ddy-----Rr~~~g~~~-~-~~f~-~~~~e~~~~~~~~vA 419 (707)
.+.-+|++.|-||+|||++|..++..... .+..+-+|+..-- .|.+..... + ..+. ..-.++.+..+...+
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~ 290 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAV 290 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 35668999999999999999999987653 4667767765421 222211110 0 0011 111233233222222
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEE
Q 005233 420 ALAMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLE 466 (707)
Q Consensus 420 ~~~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~-~~~vifIE 466 (707)
. .|.+ -...|.|..+.+.. -|..++.+ .+. +..+++|+
T Consensus 291 ~--------~l~~-~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviID 331 (460)
T PRK07004 291 Q--------KMSE-AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIID 331 (460)
T ss_pred H--------HHhc-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 2 2333 45677777776654 57777777 443 46777775
Done!