Query 005233
Match_columns 707
No_of_seqs 566 out of 2639
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:23:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2axn_A 6-phosphofructo-2-kinas 100.0 7.8E-65 2.7E-69 576.1 37.8 351 348-707 32-390 (520)
2 1bif_A 6-phosphofructo-2-kinas 100.0 1.2E-62 4.2E-67 551.2 37.6 351 348-707 36-393 (469)
3 1fzt_A Phosphoglycerate mutase 100.0 9.5E-30 3.2E-34 255.1 14.1 152 553-707 1-165 (211)
4 1h2e_A Phosphatase, YHFR; hydr 100.0 1.3E-29 4.4E-34 253.9 13.4 144 560-707 2-152 (207)
5 2a6p_A Possible phosphoglycera 100.0 4.7E-29 1.6E-33 250.3 13.3 147 552-707 3-154 (208)
6 1e58_A Phosphoglycerate mutase 100.0 5E-28 1.7E-32 248.3 14.7 147 559-707 2-185 (249)
7 3kkk_A Phosphoglycerate mutase 99.9 4.7E-28 1.6E-32 249.6 14.1 152 554-707 6-194 (258)
8 3hjg_A Putative alpha-ribazole 99.9 4.9E-28 1.7E-32 243.7 11.6 143 557-707 3-151 (213)
9 2hhj_A Bisphosphoglycerate mut 99.9 8.2E-28 2.8E-32 250.0 13.7 149 557-707 1-190 (267)
10 3d8h_A Glycolytic phosphoglyce 99.9 2E-27 6.7E-32 247.3 16.2 147 559-707 20-203 (267)
11 3gp3_A 2,3-bisphosphoglycerate 99.9 1.1E-27 3.7E-32 247.0 13.5 150 556-707 6-192 (257)
12 1yfk_A Phosphoglycerate mutase 99.9 2.9E-27 1E-31 245.2 16.0 148 558-707 2-188 (262)
13 4emb_A 2,3-bisphosphoglycerate 99.9 2.5E-27 8.4E-32 247.1 14.9 148 558-707 26-210 (274)
14 1qhf_A Protein (phosphoglycera 99.9 3.2E-27 1.1E-31 241.1 15.0 146 560-707 1-183 (240)
15 1rii_A 2,3-bisphosphoglycerate 99.9 3.6E-27 1.2E-31 245.6 14.5 147 559-707 4-185 (265)
16 4eo9_A 2,3-bisphosphoglycerate 99.9 6.3E-27 2.2E-31 243.4 14.8 147 559-707 27-208 (268)
17 2qni_A AGR_C_517P, uncharacter 99.9 8.6E-27 2.9E-31 236.3 13.9 144 554-707 16-165 (219)
18 3e9c_A ZGC:56074; histidine ph 99.9 3.5E-27 1.2E-31 245.0 10.7 131 557-695 1-141 (265)
19 1v37_A Phosphoglycerate mutase 99.9 3.3E-27 1.1E-31 231.2 8.0 133 560-707 1-135 (177)
20 3r7a_A Phosphoglycerate mutase 99.9 7.3E-27 2.5E-31 237.8 10.4 144 558-707 12-184 (237)
21 3dcy_A Regulator protein; OMIM 99.9 8.4E-27 2.9E-31 243.4 11.1 134 554-695 3-146 (275)
22 3f3k_A Uncharacterized protein 99.9 6.5E-27 2.2E-31 242.8 8.3 146 557-707 3-178 (265)
23 3d4i_A STS-2 protein; PGM, 2H- 99.9 5.5E-25 1.9E-29 228.7 11.6 147 556-707 6-204 (273)
24 3c7t_A Ecdysteroid-phosphate p 99.9 9.3E-25 3.2E-29 226.0 11.2 146 558-707 3-194 (263)
25 3mbk_A Ubiquitin-associated an 99.9 4.9E-24 1.7E-28 220.7 11.0 123 581-707 55-195 (264)
26 3eoz_A Putative phosphoglycera 99.8 1.8E-21 6.1E-26 196.0 8.0 130 557-707 19-157 (214)
27 3mxo_A Serine/threonine-protei 99.8 7.2E-21 2.5E-25 189.3 11.7 128 556-707 7-145 (202)
28 1ujc_A Phosphohistidine phosph 99.8 3.5E-18 1.2E-22 164.5 12.8 106 560-707 1-110 (161)
29 2rfl_A Putative phosphohistidi 99.7 6E-18 2.1E-22 164.7 10.6 78 559-640 8-92 (173)
30 2z0b_A GDE5, KIAA1434, putativ 99.7 7.9E-17 2.7E-21 151.0 10.4 90 27-118 5-108 (131)
31 1ac0_A Glucoamylase; hydrolase 99.7 9.9E-17 3.4E-21 145.2 7.9 89 28-120 4-96 (108)
32 3fjy_A Probable MUTT1 protein; 99.6 1.1E-15 3.6E-20 165.7 8.0 120 551-707 174-297 (364)
33 3f2i_A ALR0221 protein; alpha- 99.5 1.9E-14 6.6E-19 140.6 11.5 65 560-626 1-65 (172)
34 3bmv_A Cyclomaltodextrin gluca 99.5 2.2E-14 7.4E-19 167.7 10.7 94 27-124 580-677 (683)
35 1d3c_A Cyclodextrin glycosyltr 99.5 2.6E-14 8.9E-19 167.1 10.9 95 27-125 583-681 (686)
36 1cyg_A Cyclodextrin glucanotra 99.5 2.8E-14 9.5E-19 166.7 10.8 96 27-125 576-675 (680)
37 4hbz_A Putative phosphohistidi 99.5 8.2E-14 2.8E-18 137.8 10.1 64 558-626 18-81 (186)
38 1vem_A Beta-amylase; beta-alph 99.4 7.5E-13 2.6E-17 149.8 11.5 96 27-125 416-513 (516)
39 3zvl_A Bifunctional polynucleo 99.3 3.4E-12 1.1E-16 140.8 11.5 138 348-527 255-396 (416)
40 1ly1_A Polynucleotide kinase; 99.3 1.6E-11 5.6E-16 117.3 13.6 120 351-483 2-127 (181)
41 2vn4_A Glucoamylase; hydrolase 99.3 6E-12 2E-16 144.8 12.2 89 27-119 493-585 (599)
42 2rhm_A Putative kinase; P-loop 99.3 6.9E-11 2.4E-15 114.5 17.5 123 350-484 4-127 (193)
43 1gcy_A Glucan 1,4-alpha-maltot 99.3 2.8E-13 9.7E-18 153.7 0.0 91 27-118 427-519 (527)
44 1qho_A Alpha-amylase; glycosid 99.2 1.6E-11 5.4E-16 143.6 10.2 90 27-119 578-675 (686)
45 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 1E-10 3.5E-15 120.6 14.7 116 350-482 3-120 (260)
46 2yvu_A Probable adenylyl-sulfa 99.2 2.3E-10 8E-15 111.0 13.6 120 349-480 11-131 (186)
47 1ltq_A Polynucleotide kinase; 99.2 2.3E-10 8E-15 119.3 14.4 121 351-483 2-127 (301)
48 1m8p_A Sulfate adenylyltransfe 99.1 4.3E-10 1.5E-14 128.9 15.8 140 326-478 371-512 (573)
49 1gvn_B Zeta; postsegregational 99.1 1.3E-09 4.3E-14 114.5 17.9 153 348-509 30-188 (287)
50 3uie_A Adenylyl-sulfate kinase 99.0 1.3E-09 4.6E-14 107.3 13.3 117 350-479 24-140 (200)
51 1qhx_A CPT, protein (chloramph 99.0 1.4E-09 4.9E-14 104.1 12.7 124 351-483 3-134 (178)
52 2gks_A Bifunctional SAT/APS ki 99.0 6.4E-10 2.2E-14 126.8 11.9 144 323-480 344-488 (546)
53 1m7g_A Adenylylsulfate kinase; 99.0 1.2E-09 4E-14 108.6 12.1 117 350-478 24-148 (211)
54 1x6v_B Bifunctional 3'-phospho 99.0 1.5E-09 5.3E-14 125.1 14.0 121 348-480 49-170 (630)
55 2p5t_B PEZT; postsegregational 99.0 1.3E-09 4.4E-14 111.8 11.6 126 348-483 29-158 (253)
56 3t61_A Gluconokinase; PSI-biol 99.0 4.9E-09 1.7E-13 103.0 13.3 114 351-484 18-133 (202)
57 2bwj_A Adenylate kinase 5; pho 98.9 2.6E-08 8.7E-13 96.8 16.9 156 350-527 11-179 (199)
58 2vli_A Antibiotic resistance p 98.9 1.3E-09 4.4E-14 104.8 7.3 118 350-483 4-126 (183)
59 2c95_A Adenylate kinase 1; tra 98.9 1E-08 3.4E-13 99.4 13.0 157 350-527 8-176 (196)
60 1tev_A UMP-CMP kinase; ploop, 98.9 2.5E-08 8.6E-13 96.1 15.4 148 350-515 2-161 (196)
61 3vaa_A Shikimate kinase, SK; s 98.9 3.1E-09 1.1E-13 104.6 8.6 129 351-498 25-153 (199)
62 1qf9_A UMP/CMP kinase, protein 98.9 2.7E-08 9.2E-13 95.7 14.4 148 350-515 5-158 (194)
63 3lw7_A Adenylate kinase relate 98.9 1.8E-08 6.1E-13 94.8 12.9 119 352-483 2-123 (179)
64 2cdn_A Adenylate kinase; phosp 98.9 5.6E-09 1.9E-13 102.5 9.6 148 348-516 17-171 (201)
65 3trf_A Shikimate kinase, SK; a 98.8 3.9E-09 1.3E-13 101.9 7.8 139 351-511 5-148 (185)
66 2pez_A Bifunctional 3'-phospho 98.8 3E-08 1E-12 95.5 13.7 118 350-479 4-122 (179)
67 4eun_A Thermoresistant glucoki 98.8 1E-08 3.5E-13 100.9 10.0 113 350-483 28-146 (200)
68 1knq_A Gluconate kinase; ALFA/ 98.8 2.5E-08 8.7E-13 95.4 11.4 113 350-483 7-125 (175)
69 1ukz_A Uridylate kinase; trans 98.7 3.6E-07 1.2E-11 89.4 18.0 120 349-483 13-142 (203)
70 2iyv_A Shikimate kinase, SK; t 98.7 2.9E-08 9.9E-13 95.8 8.7 136 352-510 3-141 (184)
71 1aky_A Adenylate kinase; ATP:A 98.7 3.1E-08 1.1E-12 98.7 9.2 121 350-483 3-133 (220)
72 3cm0_A Adenylate kinase; ATP-b 98.7 3.8E-08 1.3E-12 94.8 8.8 118 350-483 3-127 (186)
73 3umf_A Adenylate kinase; rossm 98.7 1.3E-07 4.5E-12 95.6 12.7 150 344-517 22-182 (217)
74 3dl0_A Adenylate kinase; phosp 98.6 2.5E-08 8.5E-13 98.8 6.4 116 353-482 2-127 (216)
75 3fb4_A Adenylate kinase; psych 98.6 3.7E-08 1.3E-12 97.5 7.5 148 353-517 2-183 (216)
76 3tlx_A Adenylate kinase 2; str 98.6 1.1E-07 3.7E-12 97.0 10.6 163 349-527 27-226 (243)
77 3be4_A Adenylate kinase; malar 98.6 3.7E-08 1.3E-12 98.2 6.7 120 350-483 4-133 (217)
78 1kht_A Adenylate kinase; phosp 98.6 4.9E-08 1.7E-12 93.8 7.3 40 351-390 3-42 (192)
79 1nks_A Adenylate kinase; therm 98.6 1.2E-07 3.9E-12 91.2 9.3 40 352-391 2-41 (194)
80 3kb2_A SPBC2 prophage-derived 98.5 2.6E-07 8.8E-12 87.3 10.3 29 353-381 3-31 (173)
81 2pt5_A Shikimate kinase, SK; a 98.5 1.4E-07 4.7E-12 89.3 7.8 134 353-509 2-137 (168)
82 3cr8_A Sulfate adenylyltranfer 98.5 2.5E-07 8.5E-12 105.6 11.2 144 324-480 342-487 (552)
83 2xb4_A Adenylate kinase; ATP-b 98.5 3.9E-07 1.3E-11 91.4 10.4 120 352-483 1-127 (223)
84 1e6c_A Shikimate kinase; phosp 98.5 3.1E-07 1.1E-11 87.2 9.0 38 352-394 3-40 (173)
85 1zd8_A GTP:AMP phosphotransfer 98.5 6.5E-08 2.2E-12 96.9 4.3 145 350-516 6-183 (227)
86 2plr_A DTMP kinase, probable t 98.4 2.8E-06 9.6E-11 82.9 15.1 30 350-379 3-32 (213)
87 1nn5_A Similar to deoxythymidy 98.4 3.8E-06 1.3E-10 82.3 16.1 37 350-386 8-44 (215)
88 3sr0_A Adenylate kinase; phosp 98.4 3E-06 1E-10 84.8 14.4 144 352-517 1-173 (206)
89 1via_A Shikimate kinase; struc 98.4 3.1E-07 1.1E-11 88.0 6.6 133 353-510 6-139 (175)
90 4eaq_A DTMP kinase, thymidylat 98.4 8.6E-06 2.9E-10 82.4 17.4 34 349-383 24-57 (229)
91 1ak2_A Adenylate kinase isoenz 98.4 4.8E-07 1.7E-11 91.1 7.4 36 350-390 15-50 (233)
92 3nwj_A ATSK2; P loop, shikimat 98.4 7.8E-07 2.7E-11 91.7 8.9 139 351-511 48-199 (250)
93 2bdt_A BH3686; alpha-beta prot 98.3 5.6E-06 1.9E-10 80.0 13.6 113 352-483 3-123 (189)
94 2ze6_A Isopentenyl transferase 98.3 1.8E-06 6.1E-11 88.6 9.5 115 352-484 2-140 (253)
95 1zuh_A Shikimate kinase; alpha 98.3 1.3E-06 4.5E-11 82.9 7.9 39 352-395 8-46 (168)
96 2qor_A Guanylate kinase; phosp 98.3 1.5E-06 5.3E-11 85.5 8.5 27 350-376 11-37 (204)
97 1e4v_A Adenylate kinase; trans 98.3 4.3E-07 1.5E-11 90.1 4.3 33 353-390 2-34 (214)
98 1kag_A SKI, shikimate kinase I 98.3 1.1E-06 3.6E-11 83.6 6.6 39 351-394 4-42 (173)
99 2z0h_A DTMP kinase, thymidylat 98.2 2.5E-05 8.6E-10 75.3 16.0 32 352-383 1-32 (197)
100 2pbr_A DTMP kinase, thymidylat 98.2 6.8E-05 2.3E-09 71.9 18.4 30 352-381 1-30 (195)
101 3iij_A Coilin-interacting nucl 98.2 1.2E-06 4.1E-11 84.2 5.3 39 350-393 10-48 (180)
102 1g8f_A Sulfate adenylyltransfe 98.2 1E-06 3.5E-11 99.5 5.2 68 322-389 366-435 (511)
103 2wwf_A Thymidilate kinase, put 98.1 2.1E-06 7.1E-11 84.2 6.0 37 350-386 9-45 (212)
104 4edh_A DTMP kinase, thymidylat 98.1 0.00018 6.1E-09 72.2 19.5 36 350-385 5-40 (213)
105 4tmk_A Protein (thymidylate ki 98.1 0.00028 9.5E-09 70.8 19.8 30 351-380 3-32 (213)
106 1zak_A Adenylate kinase; ATP:A 98.0 5.8E-06 2E-10 82.3 7.4 33 350-382 4-36 (222)
107 1uj2_A Uridine-cytidine kinase 98.0 3E-05 1E-09 78.9 12.5 43 349-391 20-67 (252)
108 3lv8_A DTMP kinase, thymidylat 98.0 0.00012 3.9E-09 74.8 16.2 36 350-385 26-62 (236)
109 1y63_A LMAJ004144AAA protein; 98.0 1.3E-05 4.3E-10 77.7 8.2 38 350-392 9-47 (184)
110 3gmt_A Adenylate kinase; ssgci 98.0 1.6E-05 5.4E-10 81.0 9.0 146 349-517 6-187 (230)
111 3hdt_A Putative kinase; struct 98.0 3.9E-05 1.3E-09 77.6 11.6 32 350-381 13-44 (223)
112 2jaq_A Deoxyguanosine kinase; 97.9 9.6E-05 3.3E-09 71.4 12.8 25 353-377 2-26 (205)
113 1zp6_A Hypothetical protein AT 97.9 9.6E-05 3.3E-09 71.1 12.5 119 350-482 8-126 (191)
114 1gtv_A TMK, thymidylate kinase 97.9 8.1E-06 2.8E-10 80.0 4.4 33 352-384 1-33 (214)
115 3v9p_A DTMP kinase, thymidylat 97.9 7.7E-05 2.6E-09 75.7 11.6 37 349-385 23-63 (227)
116 3fdi_A Uncharacterized protein 97.9 2.9E-05 9.8E-10 77.1 8.2 29 351-379 6-34 (201)
117 2f6r_A COA synthase, bifunctio 97.8 0.00022 7.5E-09 74.2 15.0 38 349-392 73-110 (281)
118 3tr0_A Guanylate kinase, GMP k 97.8 0.00011 3.8E-09 71.3 11.8 26 351-376 7-32 (205)
119 4hlc_A DTMP kinase, thymidylat 97.8 0.0017 5.9E-08 64.5 19.9 33 352-385 3-35 (205)
120 1vht_A Dephospho-COA kinase; s 97.8 0.00022 7.7E-09 70.4 13.4 37 350-392 3-39 (218)
121 2grj_A Dephospho-COA kinase; T 97.8 0.00011 3.8E-09 72.4 10.9 40 348-392 9-48 (192)
122 3tau_A Guanylate kinase, GMP k 97.7 2.3E-05 7.8E-10 77.6 5.3 27 350-376 7-33 (208)
123 1uf9_A TT1252 protein; P-loop, 97.7 0.0001 3.4E-09 71.4 9.8 40 347-392 4-43 (203)
124 4gp7_A Metallophosphoesterase; 97.7 0.00032 1.1E-08 67.2 12.6 131 350-507 8-139 (171)
125 3a8t_A Adenylate isopentenyltr 97.7 0.00011 3.8E-09 78.8 10.1 37 348-389 37-73 (339)
126 3ake_A Cytidylate kinase; CMP 97.7 0.00013 4.5E-09 70.8 9.6 36 353-393 4-39 (208)
127 2bbw_A Adenylate kinase 4, AK4 97.7 0.00057 1.9E-08 69.0 14.5 30 350-379 26-55 (246)
128 3crm_A TRNA delta(2)-isopenten 97.6 0.00015 5E-09 77.5 10.1 28 351-378 5-32 (323)
129 4i1u_A Dephospho-COA kinase; s 97.6 0.00027 9.3E-09 70.9 10.8 120 349-483 7-153 (210)
130 1jjv_A Dephospho-COA kinase; P 97.5 0.0011 3.9E-08 64.5 14.4 35 352-392 3-37 (206)
131 3a00_A Guanylate kinase, GMP k 97.5 0.00014 4.8E-09 70.4 7.2 25 352-376 2-26 (186)
132 2if2_A Dephospho-COA kinase; a 97.5 0.00018 6E-09 70.2 7.9 34 353-392 3-36 (204)
133 1ex7_A Guanylate kinase; subst 97.5 0.00026 9E-09 69.6 9.0 23 354-376 4-26 (186)
134 2qt1_A Nicotinamide riboside k 97.5 0.00058 2E-08 66.8 11.4 37 350-390 20-56 (207)
135 2h92_A Cytidylate kinase; ross 97.4 0.0038 1.3E-07 61.3 16.2 36 351-391 3-38 (219)
136 3ld9_A DTMP kinase, thymidylat 97.4 0.00016 5.3E-09 73.3 6.2 36 349-384 19-55 (223)
137 1q3t_A Cytidylate kinase; nucl 97.4 0.0028 9.6E-08 63.5 15.4 38 350-392 15-52 (236)
138 2v54_A DTMP kinase, thymidylat 97.4 0.00034 1.1E-08 67.8 7.7 26 350-375 3-28 (204)
139 3dm5_A SRP54, signal recogniti 97.3 0.00074 2.5E-08 75.0 11.1 43 350-392 99-141 (443)
140 2j41_A Guanylate kinase; GMP, 97.3 0.00064 2.2E-08 65.8 8.7 26 350-375 5-30 (207)
141 3hjn_A DTMP kinase, thymidylat 97.3 0.005 1.7E-07 60.6 15.2 34 352-385 1-34 (197)
142 3r20_A Cytidylate kinase; stru 97.2 0.002 7E-08 65.5 11.7 38 350-392 8-45 (233)
143 1s96_A Guanylate kinase, GMP k 97.0 0.0031 1E-07 63.3 11.2 121 350-482 15-150 (219)
144 1a7j_A Phosphoribulokinase; tr 97.0 0.00039 1.3E-08 72.8 4.3 42 350-391 4-45 (290)
145 2laa_A Beta/alpha-amylase; SBD 97.0 0.0014 4.8E-08 58.7 7.3 76 27-116 3-79 (104)
146 3kl4_A SRP54, signal recogniti 96.9 0.0028 9.6E-08 70.2 10.5 44 349-392 95-138 (433)
147 1rz3_A Hypothetical protein rb 96.9 0.0015 5E-08 64.0 6.9 44 348-391 19-62 (201)
148 1vma_A Cell division protein F 96.9 0.0047 1.6E-07 65.3 11.1 43 349-391 102-144 (306)
149 3ch4_B Pmkase, phosphomevalona 96.8 0.019 6.7E-07 57.1 14.1 41 350-392 10-50 (202)
150 1cke_A CK, MSSA, protein (cyti 96.8 0.00048 1.6E-08 68.0 2.5 37 351-392 5-41 (227)
151 3lnc_A Guanylate kinase, GMP k 96.7 0.0035 1.2E-07 62.5 8.7 25 351-375 27-52 (231)
152 3tmk_A Thymidylate kinase; pho 96.7 0.0073 2.5E-07 60.6 10.4 28 350-377 4-31 (216)
153 1kgd_A CASK, peripheral plasma 96.6 0.0016 5.5E-08 62.6 5.3 26 351-376 5-30 (180)
154 3ec2_A DNA replication protein 96.6 0.006 2.1E-07 58.1 9.1 41 351-391 38-79 (180)
155 2xxa_A Signal recognition part 96.6 0.0054 1.8E-07 67.9 9.3 43 349-391 98-141 (433)
156 2j37_W Signal recognition part 96.5 0.0098 3.4E-07 67.1 11.3 43 349-391 99-141 (504)
157 1zu4_A FTSY; GTPase, signal re 96.5 0.013 4.4E-07 62.2 11.1 43 349-391 103-145 (320)
158 3t15_A Ribulose bisphosphate c 96.4 0.0059 2E-07 63.6 8.4 40 348-390 33-72 (293)
159 3d3q_A TRNA delta(2)-isopenten 96.4 0.0039 1.4E-07 66.9 6.7 35 351-390 7-41 (340)
160 3c8u_A Fructokinase; YP_612366 96.3 0.0053 1.8E-07 60.3 6.9 43 348-390 19-61 (208)
161 3syl_A Protein CBBX; photosynt 96.3 0.027 9.3E-07 57.9 12.3 31 350-380 66-96 (309)
162 1jbk_A CLPB protein; beta barr 96.3 0.015 5E-07 54.3 9.3 27 351-377 43-69 (195)
163 4e22_A Cytidylate kinase; P-lo 96.3 0.0016 5.4E-08 66.4 2.7 30 350-379 26-55 (252)
164 1odf_A YGR205W, hypothetical 3 96.2 0.004 1.4E-07 65.2 5.6 44 347-390 27-73 (290)
165 2qby_B CDC6 homolog 3, cell di 96.2 0.022 7.4E-07 60.3 11.3 38 350-387 44-89 (384)
166 2ocp_A DGK, deoxyguanosine kin 96.1 0.0027 9.4E-08 63.7 3.6 27 350-376 1-27 (241)
167 2ffh_A Protein (FFH); SRP54, s 96.1 0.022 7.7E-07 62.8 11.1 42 350-391 97-138 (425)
168 1p5z_B DCK, deoxycytidine kina 96.0 0.0013 4.6E-08 67.0 0.8 28 349-376 22-49 (263)
169 3foz_A TRNA delta(2)-isopenten 96.0 0.01 3.5E-07 63.0 7.5 35 350-389 9-43 (316)
170 3eph_A TRNA isopentenyltransfe 96.0 0.013 4.6E-07 64.2 8.5 34 351-389 2-35 (409)
171 2chg_A Replication factor C sm 96.0 0.015 5.2E-07 55.5 7.9 26 354-379 41-66 (226)
172 2v1u_A Cell division control p 95.9 0.034 1.2E-06 58.4 11.2 28 350-377 43-70 (387)
173 1j8m_F SRP54, signal recogniti 95.9 0.017 5.9E-07 60.5 8.8 41 351-391 98-138 (297)
174 3ney_A 55 kDa erythrocyte memb 95.9 0.0091 3.1E-07 59.2 6.1 27 350-376 18-44 (197)
175 3exa_A TRNA delta(2)-isopenten 95.9 0.0086 2.9E-07 63.7 6.1 34 351-389 3-36 (322)
176 3bos_A Putative DNA replicatio 95.8 0.0086 3E-07 58.6 5.6 40 351-390 52-91 (242)
177 3e70_C DPA, signal recognition 95.8 0.034 1.2E-06 59.2 10.5 40 349-388 127-166 (328)
178 1xjc_A MOBB protein homolog; s 95.8 0.0074 2.5E-07 58.4 4.9 36 351-386 4-39 (169)
179 1l8q_A Chromosomal replication 95.8 0.041 1.4E-06 57.4 11.0 39 352-390 38-76 (324)
180 2yhs_A FTSY, cell division pro 95.8 0.017 5.8E-07 65.0 8.4 43 349-391 291-333 (503)
181 3eie_A Vacuolar protein sortin 95.8 0.064 2.2E-06 56.2 12.5 37 350-389 50-86 (322)
182 2z4s_A Chromosomal replication 95.8 0.073 2.5E-06 58.7 13.4 40 351-390 130-171 (440)
183 3tqc_A Pantothenate kinase; bi 95.8 0.011 3.7E-07 63.0 6.4 43 348-390 89-133 (321)
184 2p65_A Hypothetical protein PF 95.8 0.022 7.6E-07 53.1 7.9 27 351-377 43-69 (187)
185 4a1f_A DNAB helicase, replicat 95.7 0.047 1.6E-06 58.4 11.3 110 350-468 45-165 (338)
186 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.044 1.5E-06 54.8 10.0 35 350-387 38-72 (262)
187 2v3c_C SRP54, signal recogniti 95.6 0.0044 1.5E-07 68.5 2.7 43 349-391 97-139 (432)
188 1yrb_A ATP(GTP)binding protein 95.6 0.013 4.3E-07 59.0 5.9 39 349-388 12-50 (262)
189 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.098 3.4E-06 55.1 12.9 26 350-375 44-69 (322)
190 2cvh_A DNA repair and recombin 95.6 0.044 1.5E-06 53.2 9.4 36 350-388 19-54 (220)
191 3asz_A Uridine kinase; cytidin 95.5 0.0092 3.2E-07 58.1 4.3 27 350-376 5-31 (211)
192 1sq5_A Pantothenate kinase; P- 95.4 0.017 6E-07 60.5 6.4 42 349-390 78-121 (308)
193 2w58_A DNAI, primosome compone 95.4 0.014 4.8E-07 56.4 5.2 39 352-390 55-93 (202)
194 1u94_A RECA protein, recombina 95.4 0.048 1.6E-06 58.7 9.9 38 350-387 62-99 (356)
195 1ls1_A Signal recognition part 95.4 0.048 1.6E-06 57.0 9.7 41 350-390 97-137 (295)
196 2qp9_X Vacuolar protein sortin 95.4 0.074 2.5E-06 56.8 11.3 35 351-388 84-118 (355)
197 2q6t_A DNAB replication FORK h 95.3 0.18 6.2E-06 55.4 14.5 117 341-467 191-318 (444)
198 3te6_A Regulatory protein SIR3 95.3 0.078 2.7E-06 56.2 10.8 29 349-377 43-71 (318)
199 2px0_A Flagellar biosynthesis 95.3 0.012 4.2E-07 61.6 4.6 42 350-391 104-146 (296)
200 4b4t_M 26S protease regulatory 95.2 0.045 1.5E-06 60.6 9.0 28 350-377 214-241 (434)
201 3czp_A Putative polyphosphate 95.2 0.024 8.1E-07 63.8 6.9 110 349-484 41-170 (500)
202 3h4m_A Proteasome-activating n 95.2 0.07 2.4E-06 54.2 9.8 26 351-376 51-76 (285)
203 1ofh_A ATP-dependent HSL prote 95.2 0.039 1.3E-06 56.4 8.0 37 351-390 50-86 (310)
204 1fnn_A CDC6P, cell division co 95.1 0.15 5E-06 53.8 12.5 34 353-386 46-80 (389)
205 3bh0_A DNAB-like replicative h 95.1 0.16 5.6E-06 53.2 12.7 38 350-387 67-104 (315)
206 1d2n_A N-ethylmaleimide-sensit 95.0 0.13 4.6E-06 52.1 11.5 28 349-376 62-89 (272)
207 2kjq_A DNAA-related protein; s 95.0 0.018 6.3E-07 53.9 4.6 37 351-387 36-72 (149)
208 1um8_A ATP-dependent CLP prote 95.0 0.026 8.8E-07 60.4 6.4 26 351-376 72-97 (376)
209 1rj9_A FTSY, signal recognitio 95.0 0.017 5.8E-07 60.8 4.8 39 350-388 101-139 (304)
210 3b9p_A CG5977-PA, isoform A; A 95.0 0.06 2E-06 55.2 8.8 27 350-376 53-79 (297)
211 3p32_A Probable GTPase RV1496/ 94.9 0.025 8.5E-07 60.5 5.9 40 349-388 77-116 (355)
212 3czq_A Putative polyphosphate 94.9 0.017 5.7E-07 61.0 4.3 109 350-484 85-213 (304)
213 4b4t_J 26S protease regulatory 94.9 0.049 1.7E-06 59.7 8.0 28 351-378 182-209 (405)
214 2vhj_A Ntpase P4, P4; non- hyd 94.8 0.082 2.8E-06 56.4 9.4 24 351-374 123-146 (331)
215 3rhf_A Putative polyphosphate 94.8 0.02 6.7E-07 59.9 4.5 110 349-484 73-202 (289)
216 3b9q_A Chloroplast SRP recepto 94.8 0.022 7.4E-07 59.9 4.9 40 349-388 98-137 (302)
217 2jeo_A Uridine-cytidine kinase 94.7 0.022 7.6E-07 57.3 4.6 29 350-378 24-52 (245)
218 3bgw_A DNAB-like replicative h 94.7 0.3 1E-05 54.0 14.0 39 350-388 196-234 (444)
219 4b4t_L 26S protease subunit RP 94.7 0.061 2.1E-06 59.5 8.3 28 350-377 214-241 (437)
220 2og2_A Putative signal recogni 94.6 0.024 8.3E-07 61.1 4.9 40 349-388 155-194 (359)
221 3u61_B DNA polymerase accessor 94.6 0.12 4E-06 53.7 10.0 27 350-376 47-73 (324)
222 2qby_A CDC6 homolog 1, cell di 94.6 0.11 3.6E-06 54.5 9.7 38 350-387 44-84 (386)
223 1nd6_A Prostatic acid phosphat 94.6 0.077 2.6E-06 56.0 8.7 65 562-626 7-87 (354)
224 4b4t_K 26S protease regulatory 94.6 0.067 2.3E-06 59.0 8.3 28 350-377 205-232 (428)
225 2zr9_A Protein RECA, recombina 94.6 0.095 3.2E-06 56.2 9.3 39 350-388 60-98 (349)
226 3hr8_A Protein RECA; alpha and 94.6 0.26 9E-06 53.0 12.8 39 350-388 60-98 (356)
227 1xp8_A RECA protein, recombina 94.6 0.18 6E-06 54.5 11.5 38 351-388 74-111 (366)
228 1np6_A Molybdopterin-guanine d 94.5 0.033 1.1E-06 53.9 5.1 34 352-385 7-40 (174)
229 1iqp_A RFCS; clamp loader, ext 94.5 0.095 3.3E-06 53.8 8.8 24 354-377 49-72 (327)
230 4b4t_I 26S protease regulatory 94.5 0.071 2.4E-06 58.9 8.1 28 350-377 215-242 (437)
231 3d8b_A Fidgetin-like protein 1 94.4 0.13 4.5E-06 54.8 9.9 35 350-387 116-150 (357)
232 3vfd_A Spastin; ATPase, microt 94.4 0.11 3.7E-06 55.9 9.3 27 350-376 147-173 (389)
233 1sxj_C Activator 1 40 kDa subu 94.3 0.071 2.4E-06 56.1 7.6 24 354-377 49-72 (340)
234 3czp_A Putative polyphosphate 94.3 0.044 1.5E-06 61.7 6.2 110 349-484 298-427 (500)
235 2ga8_A Hypothetical 39.9 kDa p 94.2 0.032 1.1E-06 60.2 4.7 28 351-378 24-51 (359)
236 4fcw_A Chaperone protein CLPB; 94.2 0.049 1.7E-06 55.9 5.9 37 352-388 48-84 (311)
237 4b4t_H 26S protease regulatory 94.2 0.08 2.7E-06 59.0 7.9 28 350-377 242-269 (467)
238 1lv7_A FTSH; alpha/beta domain 94.1 0.026 9E-07 56.8 3.6 25 352-376 46-70 (257)
239 2z43_A DNA repair and recombin 94.1 0.13 4.6E-06 54.0 9.1 40 350-389 106-151 (324)
240 1cr0_A DNA primase/helicase; R 94.1 0.19 6.4E-06 51.7 10.0 38 350-387 34-72 (296)
241 1g41_A Heat shock protein HSLU 94.1 0.11 3.6E-06 57.7 8.5 27 351-377 50-76 (444)
242 2r6a_A DNAB helicase, replicat 94.0 0.25 8.5E-06 54.5 11.4 107 350-466 202-320 (454)
243 1sxj_B Activator 1 37 kDa subu 94.0 0.059 2E-06 55.3 6.0 24 354-377 45-68 (323)
244 2orw_A Thymidine kinase; TMTK, 94.0 0.048 1.7E-06 52.9 5.0 35 351-385 3-37 (184)
245 2r8r_A Sensor protein; KDPD, P 93.9 0.065 2.2E-06 54.3 5.9 41 349-389 4-44 (228)
246 3n70_A Transport activator; si 93.8 0.031 1.1E-06 51.6 3.2 30 354-383 27-56 (145)
247 2dyk_A GTP-binding protein; GT 93.8 0.015 5.3E-07 53.0 1.1 22 353-374 3-24 (161)
248 1nrj_B SR-beta, signal recogni 93.8 0.14 4.9E-06 49.5 8.1 28 348-375 9-36 (218)
249 3aez_A Pantothenate kinase; tr 93.8 0.041 1.4E-06 58.1 4.4 41 349-389 88-130 (312)
250 1njg_A DNA polymerase III subu 93.8 0.039 1.4E-06 53.1 4.0 27 351-377 45-71 (250)
251 2qgz_A Helicase loader, putati 93.7 0.053 1.8E-06 56.9 5.1 41 351-391 152-193 (308)
252 1v5w_A DMC1, meiotic recombina 93.7 0.28 9.5E-06 52.1 10.8 39 350-388 121-165 (343)
253 3pvs_A Replication-associated 93.7 0.24 8.3E-06 54.8 10.6 25 352-376 51-75 (447)
254 3lda_A DNA repair protein RAD5 93.7 0.21 7.2E-06 54.6 9.9 25 350-374 177-201 (400)
255 2w0m_A SSO2452; RECA, SSPF, un 93.7 0.06 2.1E-06 52.3 5.1 37 351-387 23-59 (235)
256 1q57_A DNA primase/helicase; d 93.6 0.12 4.2E-06 57.6 8.1 39 350-388 241-280 (503)
257 1lvg_A Guanylate kinase, GMP k 93.5 0.035 1.2E-06 54.1 3.0 26 351-376 4-29 (198)
258 3cf0_A Transitional endoplasmi 93.4 0.039 1.3E-06 57.4 3.4 26 351-376 49-74 (301)
259 2wsm_A Hydrogenase expression/ 93.4 0.082 2.8E-06 51.4 5.5 35 350-385 29-63 (221)
260 1ye8_A Protein THEP1, hypothet 93.4 0.047 1.6E-06 52.7 3.7 24 353-376 2-25 (178)
261 3ntl_A Acid glucose-1-phosphat 93.3 0.24 8.2E-06 54.1 9.6 66 561-626 10-100 (398)
262 4dzz_A Plasmid partitioning pr 93.3 0.19 6.6E-06 48.1 8.0 38 352-389 3-40 (206)
263 2bjv_A PSP operon transcriptio 93.3 0.055 1.9E-06 54.7 4.2 37 353-389 31-67 (265)
264 2www_A Methylmalonic aciduria 93.3 0.095 3.3E-06 56.0 6.3 40 348-387 71-110 (349)
265 2r2a_A Uncharacterized protein 93.3 0.061 2.1E-06 53.1 4.4 25 351-375 5-29 (199)
266 2dr3_A UPF0273 protein PH0284; 93.2 0.066 2.3E-06 52.7 4.6 38 351-388 23-60 (247)
267 3hws_A ATP-dependent CLP prote 93.2 0.038 1.3E-06 58.8 3.0 34 351-387 51-84 (363)
268 3it3_A Acid phosphatase; HAP, 93.2 0.23 7.9E-06 52.9 9.1 66 561-626 11-92 (342)
269 3pfi_A Holliday junction ATP-d 93.2 0.25 8.6E-06 51.4 9.2 24 353-376 57-80 (338)
270 2x8a_A Nuclear valosin-contain 93.1 0.044 1.5E-06 56.5 3.3 23 354-376 47-69 (274)
271 2b8t_A Thymidine kinase; deoxy 93.1 0.092 3.1E-06 52.9 5.5 38 349-386 10-47 (223)
272 1ixz_A ATP-dependent metallopr 93.1 0.045 1.5E-06 54.9 3.2 23 354-376 52-74 (254)
273 2xtp_A GTPase IMAP family memb 93.0 0.23 8E-06 49.8 8.4 25 350-374 21-45 (260)
274 3end_A Light-independent proto 93.0 0.096 3.3E-06 54.2 5.6 39 350-388 40-78 (307)
275 2r62_A Cell division protease 92.9 0.032 1.1E-06 56.3 1.7 24 354-377 47-70 (268)
276 1dek_A Deoxynucleoside monopho 92.9 0.055 1.9E-06 55.2 3.4 25 352-376 2-26 (241)
277 2ce7_A Cell division protein F 92.9 0.28 9.5E-06 54.8 9.4 34 353-389 51-84 (476)
278 3zq6_A Putative arsenical pump 92.8 0.13 4.5E-06 54.2 6.4 39 351-389 14-52 (324)
279 2p67_A LAO/AO transport system 92.8 0.1 3.6E-06 55.4 5.7 40 349-388 54-93 (341)
280 2f1r_A Molybdopterin-guanine d 92.8 0.055 1.9E-06 52.1 3.2 33 353-385 4-36 (171)
281 2vp4_A Deoxynucleoside kinase; 92.8 0.041 1.4E-06 54.8 2.4 26 349-374 18-43 (230)
282 1w5s_A Origin recognition comp 92.8 0.79 2.7E-05 48.5 12.6 28 350-377 49-78 (412)
283 1in4_A RUVB, holliday junction 92.7 0.059 2E-06 56.9 3.5 25 352-376 52-76 (334)
284 2qmh_A HPR kinase/phosphorylas 92.6 0.044 1.5E-06 54.6 2.2 27 350-376 33-59 (205)
285 3ug7_A Arsenical pump-driving 92.6 0.13 4.3E-06 55.0 5.9 41 349-389 24-64 (349)
286 3cf2_A TER ATPase, transitiona 92.6 0.11 3.9E-06 61.6 6.0 36 349-387 236-271 (806)
287 1z0n_A 5'-AMP-activated protei 92.5 0.19 6.5E-06 43.9 6.0 53 30-95 10-62 (96)
288 1xx6_A Thymidine kinase; NESG, 92.4 0.14 5E-06 50.1 5.7 37 350-386 7-43 (191)
289 1dkq_A Phytase; histidine acid 92.4 0.24 8.3E-06 53.9 8.0 66 561-626 11-100 (410)
290 1iy2_A ATP-dependent metallopr 92.4 0.065 2.2E-06 54.8 3.2 23 354-376 76-98 (278)
291 1svi_A GTP-binding protein YSX 92.3 0.24 8.3E-06 46.6 7.0 24 350-373 22-45 (195)
292 4dcu_A GTP-binding protein ENG 92.3 0.079 2.7E-06 58.5 4.0 39 433-471 104-143 (456)
293 1zj6_A ADP-ribosylation factor 92.3 0.15 5.1E-06 48.0 5.4 25 349-373 14-38 (187)
294 3uk6_A RUVB-like 2; hexameric 92.2 0.073 2.5E-06 56.1 3.5 27 351-377 70-96 (368)
295 2ehv_A Hypothetical protein PH 92.2 0.12 4.3E-06 50.9 5.0 38 350-387 29-67 (251)
296 4a74_A DNA repair and recombin 92.2 0.073 2.5E-06 51.9 3.2 26 350-375 24-49 (231)
297 2woo_A ATPase GET3; tail-ancho 92.1 0.13 4.5E-06 54.4 5.4 40 350-389 18-57 (329)
298 1tue_A Replication protein E1; 92.1 0.065 2.2E-06 53.7 2.8 26 351-376 58-83 (212)
299 1z6g_A Guanylate kinase; struc 92.1 0.065 2.2E-06 53.1 2.7 25 351-375 23-47 (218)
300 1znw_A Guanylate kinase, GMP k 92.0 0.08 2.7E-06 51.7 3.3 27 350-376 19-45 (207)
301 2c9o_A RUVB-like 1; hexameric 92.0 0.076 2.6E-06 58.6 3.4 36 351-387 63-98 (456)
302 2gza_A Type IV secretion syste 92.0 0.21 7.3E-06 53.5 6.8 137 351-498 175-314 (361)
303 2hf9_A Probable hydrogenase ni 91.9 0.17 5.7E-06 49.4 5.5 28 350-377 37-64 (226)
304 3pxg_A Negative regulator of g 91.8 0.13 4.5E-06 57.0 5.1 25 353-377 203-227 (468)
305 3a1s_A Iron(II) transport prot 91.7 0.36 1.2E-05 49.1 7.8 24 350-373 4-27 (258)
306 2wjg_A FEOB, ferrous iron tran 91.6 0.14 4.7E-06 48.1 4.3 25 349-373 5-29 (188)
307 1n0w_A DNA repair protein RAD5 91.5 0.08 2.7E-06 52.1 2.6 25 350-374 23-47 (243)
308 3iqw_A Tail-anchored protein t 91.5 0.17 6E-06 53.8 5.4 38 351-388 16-53 (334)
309 2wnh_A 3-phytase; histidine ac 91.4 0.33 1.1E-05 53.0 7.7 65 562-626 20-108 (418)
310 3pqc_A Probable GTP-binding pr 91.3 1.1 3.9E-05 41.6 10.4 25 350-374 22-46 (195)
311 1svm_A Large T antigen; AAA+ f 91.3 0.11 3.9E-06 56.3 3.8 27 350-376 168-194 (377)
312 1sxj_D Activator 1 41 kDa subu 91.3 0.11 3.7E-06 54.2 3.6 23 354-376 61-83 (353)
313 1sxj_A Activator 1 95 kDa subu 91.3 0.11 3.9E-06 58.2 3.9 34 351-387 77-110 (516)
314 2qm8_A GTPase/ATPase; G protei 91.3 0.21 7.2E-06 53.1 5.8 38 350-387 54-91 (337)
315 2zts_A Putative uncharacterize 91.1 0.21 7E-06 49.2 5.2 37 350-386 29-66 (251)
316 2i3b_A HCR-ntpase, human cance 91.1 0.11 3.9E-06 50.6 3.2 30 353-382 3-32 (189)
317 1r6b_X CLPA protein; AAA+, N-t 91.1 0.5 1.7E-05 55.3 9.2 35 353-390 490-524 (758)
318 1g8p_A Magnesium-chelatase 38 90.8 0.075 2.6E-06 55.4 1.8 23 354-376 48-70 (350)
319 3co5_A Putative two-component 90.8 0.059 2E-06 49.6 0.8 23 354-376 30-52 (143)
320 3kjh_A CO dehydrogenase/acetyl 90.8 0.14 4.7E-06 50.4 3.6 36 354-389 3-38 (254)
321 1hqc_A RUVB; extended AAA-ATPa 90.8 0.11 3.6E-06 53.8 2.8 25 352-376 39-63 (324)
322 3pxi_A Negative regulator of g 90.7 0.21 7.3E-06 58.6 5.7 42 349-390 518-560 (758)
323 3hu3_A Transitional endoplasmi 90.6 0.46 1.6E-05 53.2 8.0 37 351-390 238-274 (489)
324 3ea0_A ATPase, para family; al 90.6 0.28 9.5E-06 48.4 5.6 41 350-390 4-45 (245)
325 2r44_A Uncharacterized protein 90.5 0.087 3E-06 55.0 1.9 25 353-377 48-72 (331)
326 3i8s_A Ferrous iron transport 90.5 0.43 1.5E-05 48.8 7.2 24 351-374 3-26 (274)
327 2woj_A ATPase GET3; tail-ancho 90.5 0.24 8.1E-06 53.1 5.3 40 350-389 17-58 (354)
328 2eyu_A Twitching motility prot 90.4 0.2 6.8E-06 51.4 4.4 29 350-378 24-52 (261)
329 3k9g_A PF-32 protein; ssgcid, 90.4 0.21 7E-06 50.4 4.5 40 350-390 27-66 (267)
330 2v9p_A Replication protein E1; 90.4 0.15 5.2E-06 53.7 3.6 25 351-375 126-150 (305)
331 1htw_A HI0065; nucleotide-bind 90.4 0.19 6.5E-06 47.6 4.0 26 350-375 32-57 (158)
332 1u0j_A DNA replication protein 90.4 0.16 5.6E-06 52.5 3.8 31 349-379 102-132 (267)
333 1g3q_A MIND ATPase, cell divis 90.4 0.25 8.6E-06 48.5 5.0 39 351-389 3-41 (237)
334 2afh_E Nitrogenase iron protei 90.3 0.26 9E-06 50.4 5.4 37 353-389 4-40 (289)
335 1cp2_A CP2, nitrogenase iron p 90.2 0.28 9.6E-06 49.3 5.4 37 353-389 3-39 (269)
336 2ph1_A Nucleotide-binding prot 90.2 0.31 1.1E-05 49.2 5.6 41 350-390 18-58 (262)
337 1sxj_E Activator 1 40 kDa subu 90.2 0.21 7.3E-06 52.2 4.5 26 350-376 36-61 (354)
338 3m6a_A ATP-dependent protease 90.1 0.16 5.4E-06 57.6 3.7 27 350-376 107-133 (543)
339 3bc1_A RAS-related protein RAB 90.0 0.21 7.3E-06 46.5 4.0 26 348-373 8-33 (195)
340 3cwq_A Para family chromosome 90.0 0.31 1.1E-05 47.7 5.3 37 352-389 2-38 (209)
341 1upt_A ARL1, ADP-ribosylation 89.9 0.24 8.4E-06 45.3 4.3 25 349-373 5-29 (171)
342 1jr3_A DNA polymerase III subu 89.9 0.18 6.3E-06 52.9 3.8 27 351-377 38-64 (373)
343 2zan_A Vacuolar protein sortin 89.8 0.15 5.2E-06 56.1 3.2 25 351-375 167-191 (444)
344 3io3_A DEHA2D07832P; chaperone 89.7 0.29 1E-05 52.4 5.2 39 350-388 17-57 (348)
345 3nme_A Ptpkis1 protein, SEX4 g 89.7 0.62 2.1E-05 48.6 7.6 71 28-115 167-238 (294)
346 3jvv_A Twitching mobility prot 89.7 0.47 1.6E-05 50.9 6.8 27 352-378 124-150 (356)
347 1z0f_A RAB14, member RAS oncog 89.7 0.23 7.7E-06 45.8 3.8 26 349-374 13-38 (179)
348 2j9r_A Thymidine kinase; TK1, 89.7 0.48 1.6E-05 47.5 6.4 38 349-386 26-63 (214)
349 1wf3_A GTP-binding protein; GT 89.6 1.3 4.4E-05 46.2 10.0 23 351-373 7-29 (301)
350 3iev_A GTP-binding protein ERA 89.6 2 6.8E-05 44.7 11.4 24 350-373 9-32 (308)
351 4dhe_A Probable GTP-binding pr 89.6 0.47 1.6E-05 45.8 6.2 25 350-374 28-52 (223)
352 3q9l_A Septum site-determining 89.6 0.31 1.1E-05 48.5 5.0 39 351-389 3-41 (260)
353 1hyq_A MIND, cell division inh 89.5 0.36 1.2E-05 48.3 5.5 39 351-389 3-41 (263)
354 3la6_A Tyrosine-protein kinase 89.5 0.41 1.4E-05 49.7 6.0 42 349-390 91-132 (286)
355 1p6x_A Thymidine kinase; P-loo 89.5 0.12 4.2E-06 55.1 2.1 29 350-378 6-34 (334)
356 3cmw_A Protein RECA, recombina 89.4 0.74 2.5E-05 58.8 9.3 40 349-388 730-769 (1706)
357 1ypw_A Transitional endoplasmi 89.4 0.84 2.9E-05 54.2 9.3 35 350-387 237-271 (806)
358 3bfv_A CAPA1, CAPB2, membrane 89.4 0.4 1.4E-05 49.3 5.7 39 351-389 83-121 (271)
359 1ihu_A Arsenical pump-driving 89.4 0.3 1E-05 55.6 5.2 39 350-388 7-45 (589)
360 2hjg_A GTP-binding protein ENG 89.3 0.35 1.2E-05 53.0 5.6 40 433-472 84-124 (436)
361 1ojl_A Transcriptional regulat 89.3 0.21 7.3E-06 52.1 3.7 36 352-387 26-61 (304)
362 2chq_A Replication factor C sm 89.3 0.2 6.8E-06 51.2 3.4 23 354-376 41-63 (319)
363 2gj8_A MNME, tRNA modification 89.3 0.23 7.8E-06 46.6 3.5 25 350-374 3-27 (172)
364 2wji_A Ferrous iron transport 89.2 0.23 7.9E-06 46.0 3.5 23 351-373 3-25 (165)
365 1oix_A RAS-related protein RAB 89.2 0.26 8.9E-06 47.0 3.9 26 350-375 28-53 (191)
366 1z2a_A RAS-related protein RAB 89.1 0.25 8.7E-06 44.9 3.7 25 350-374 4-28 (168)
367 1c9k_A COBU, adenosylcobinamid 89.1 0.17 5.9E-06 49.3 2.6 22 353-374 1-22 (180)
368 2dhr_A FTSH; AAA+ protein, hex 89.1 0.29 1E-05 55.0 4.9 32 354-388 67-98 (499)
369 1nlf_A Regulatory protein REPA 89.0 0.23 8E-06 50.6 3.7 27 350-376 29-55 (279)
370 2ce2_X GTPase HRAS; signaling 89.0 0.26 8.9E-06 44.4 3.7 24 351-374 3-26 (166)
371 3tqf_A HPR(Ser) kinase; transf 89.0 0.19 6.5E-06 49.1 2.7 24 351-374 16-39 (181)
372 2lkc_A Translation initiation 88.8 0.29 9.8E-06 45.2 3.8 25 349-373 6-30 (178)
373 3cf2_A TER ATPase, transitiona 88.7 0.44 1.5E-05 56.6 6.2 27 351-377 511-537 (806)
374 3cio_A ETK, tyrosine-protein k 88.7 0.51 1.7E-05 49.2 6.0 39 351-389 104-143 (299)
375 1m7b_A RND3/RHOE small GTP-bin 88.6 0.28 9.5E-06 46.1 3.7 26 349-374 5-30 (184)
376 2ged_A SR-beta, signal recogni 88.5 0.28 9.7E-06 46.2 3.7 26 349-374 46-71 (193)
377 1kao_A RAP2A; GTP-binding prot 88.5 0.3 1E-05 44.2 3.7 23 351-373 3-25 (167)
378 2oze_A ORF delta'; para, walke 88.5 0.4 1.4E-05 49.1 5.1 41 351-391 35-77 (298)
379 2ewv_A Twitching motility prot 88.4 0.31 1E-05 52.6 4.3 29 350-378 135-163 (372)
380 3kkq_A RAS-related protein M-R 88.3 0.33 1.1E-05 45.2 4.0 27 348-374 15-41 (183)
381 3con_A GTPase NRAS; structural 88.3 0.29 1E-05 46.0 3.6 25 350-374 20-44 (190)
382 2erx_A GTP-binding protein DI- 88.2 0.3 1E-05 44.5 3.5 23 351-373 3-25 (172)
383 2nzj_A GTP-binding protein REM 88.1 0.32 1.1E-05 44.6 3.7 24 350-373 3-26 (175)
384 1z06_A RAS-related protein RAB 88.1 0.32 1.1E-05 45.8 3.7 25 349-373 18-42 (189)
385 1ky3_A GTP-binding protein YPT 87.9 0.33 1.1E-05 44.7 3.7 25 350-374 7-31 (182)
386 1pui_A ENGB, probable GTP-bind 87.9 0.19 6.5E-06 48.2 2.0 24 350-373 25-48 (210)
387 3cmu_A Protein RECA, recombina 87.9 2.2 7.4E-05 55.4 12.1 49 340-388 1415-1464(2050)
388 2hxs_A RAB-26, RAS-related pro 87.8 0.4 1.4E-05 44.2 4.1 24 350-373 5-28 (178)
389 1u8z_A RAS-related protein RAL 87.7 0.36 1.2E-05 43.7 3.7 24 351-374 4-27 (168)
390 1of1_A Thymidine kinase; trans 87.7 0.23 7.8E-06 53.9 2.7 31 349-379 47-77 (376)
391 3fkq_A NTRC-like two-domain pr 87.7 0.51 1.7E-05 50.5 5.4 39 350-388 143-181 (373)
392 1mky_A Probable GTP-binding pr 87.6 0.77 2.6E-05 50.2 6.9 21 353-373 3-23 (439)
393 2fn4_A P23, RAS-related protei 87.6 0.43 1.5E-05 43.9 4.2 25 350-374 8-32 (181)
394 2h17_A ADP-ribosylation factor 87.5 0.32 1.1E-05 45.6 3.3 25 349-373 19-43 (181)
395 4aee_A Alpha amylase, catalyti 87.5 0.75 2.6E-05 53.6 7.1 60 27-95 14-73 (696)
396 3clv_A RAB5 protein, putative; 87.5 0.49 1.7E-05 44.2 4.6 25 350-374 6-30 (208)
397 3e1s_A Exodeoxyribonuclease V, 87.5 0.45 1.5E-05 54.3 5.1 34 352-385 205-238 (574)
398 3q85_A GTP-binding protein REM 87.4 0.3 1E-05 44.6 3.0 21 352-372 3-23 (169)
399 1c1y_A RAS-related protein RAP 87.4 0.39 1.3E-05 43.6 3.7 23 351-373 3-25 (167)
400 4dsu_A GTPase KRAS, isoform 2B 87.4 0.36 1.2E-05 44.9 3.6 25 350-374 3-27 (189)
401 3ihw_A Centg3; RAS, centaurin, 87.3 0.44 1.5E-05 45.1 4.2 27 348-374 17-43 (184)
402 3q72_A GTP-binding protein RAD 87.3 0.29 9.8E-06 44.6 2.8 20 353-372 4-23 (166)
403 3upu_A ATP-dependent DNA helic 87.1 0.48 1.6E-05 52.2 4.9 28 353-380 47-74 (459)
404 1ihu_A Arsenical pump-driving 87.0 0.61 2.1E-05 53.0 5.9 39 350-388 326-364 (589)
405 3tw8_B RAS-related protein RAB 87.0 0.37 1.3E-05 44.3 3.4 24 349-372 7-30 (181)
406 1wcv_1 SOJ, segregation protei 87.0 0.35 1.2E-05 48.7 3.4 40 351-390 7-46 (257)
407 3th5_A RAS-related C3 botulinu 86.9 0.12 4.2E-06 49.5 0.0 25 349-373 28-52 (204)
408 1nij_A Hypothetical protein YJ 86.9 0.31 1E-05 51.2 3.1 23 352-374 5-27 (318)
409 2f9l_A RAB11B, member RAS onco 86.9 0.38 1.3E-05 45.9 3.5 24 351-374 5-28 (199)
410 2zej_A Dardarin, leucine-rich 86.8 0.28 9.5E-06 46.3 2.5 22 352-373 3-24 (184)
411 1lw7_A Transcriptional regulat 86.8 0.31 1.1E-05 52.0 3.1 26 351-376 170-195 (365)
412 3lxx_A GTPase IMAP family memb 86.8 0.38 1.3E-05 47.7 3.5 26 349-374 27-52 (239)
413 3nbx_X ATPase RAVA; AAA+ ATPas 86.7 0.18 6.2E-06 56.7 1.3 24 353-376 43-66 (500)
414 3tif_A Uncharacterized ABC tra 86.7 0.31 1.1E-05 49.0 2.8 25 351-375 31-55 (235)
415 2pcj_A ABC transporter, lipopr 86.7 0.3 1E-05 48.7 2.7 25 351-375 30-54 (224)
416 3pxi_A Negative regulator of g 86.7 0.33 1.1E-05 57.0 3.4 24 353-376 203-226 (758)
417 3b85_A Phosphate starvation-in 86.6 0.33 1.1E-05 48.1 2.9 24 351-374 22-45 (208)
418 2gf0_A GTP-binding protein DI- 86.6 0.5 1.7E-05 44.5 4.1 24 350-373 7-30 (199)
419 2a5j_A RAS-related protein RAB 86.5 0.51 1.7E-05 44.5 4.2 26 348-373 18-43 (191)
420 1z08_A RAS-related protein RAB 86.5 0.44 1.5E-05 43.4 3.6 25 350-374 5-29 (170)
421 1r2q_A RAS-related protein RAB 86.5 0.42 1.4E-05 43.4 3.4 24 350-373 5-28 (170)
422 1ek0_A Protein (GTP-binding pr 86.5 0.42 1.4E-05 43.4 3.4 24 351-374 3-26 (170)
423 2cbz_A Multidrug resistance-as 86.5 0.32 1.1E-05 49.0 2.8 25 351-375 31-55 (237)
424 4ag6_A VIRB4 ATPase, type IV s 86.4 0.58 2E-05 50.2 5.0 40 353-392 37-77 (392)
425 1a5t_A Delta prime, HOLB; zinc 86.4 0.46 1.6E-05 50.0 4.1 27 351-377 24-50 (334)
426 2xj4_A MIPZ; replication, cell 86.3 0.52 1.8E-05 48.3 4.4 38 352-389 6-43 (286)
427 1byi_A Dethiobiotin synthase; 86.3 0.75 2.6E-05 44.7 5.3 35 352-386 3-37 (224)
428 1wms_A RAB-9, RAB9, RAS-relate 86.2 0.45 1.5E-05 43.8 3.5 24 350-373 6-29 (177)
429 1moz_A ARL1, ADP-ribosylation 86.2 0.37 1.3E-05 44.7 3.0 24 349-372 16-39 (183)
430 1qvr_A CLPB protein; coiled co 86.2 0.42 1.4E-05 57.0 4.1 38 353-390 590-627 (854)
431 1g16_A RAS-related protein SEC 86.1 0.49 1.7E-05 43.0 3.7 23 351-373 3-25 (170)
432 3cmw_A Protein RECA, recombina 86.1 2.5 8.6E-05 54.0 11.1 39 350-388 382-420 (1706)
433 2g6b_A RAS-related protein RAB 86.1 0.46 1.6E-05 43.9 3.5 25 350-374 9-33 (180)
434 1d2e_A Elongation factor TU (E 86.1 2.7 9.3E-05 45.3 10.1 25 351-375 3-27 (397)
435 1e2k_A Thymidine kinase; trans 86.0 0.25 8.6E-06 52.7 1.9 30 350-379 3-32 (331)
436 2c78_A Elongation factor TU-A; 86.0 2.5 8.6E-05 45.6 9.8 27 350-376 10-36 (405)
437 1mky_A Probable GTP-binding pr 85.9 1.4 4.6E-05 48.3 7.7 25 350-374 179-203 (439)
438 1z0j_A RAB-22, RAS-related pro 85.9 0.46 1.6E-05 43.2 3.4 25 350-374 5-29 (170)
439 2onk_A Molybdate/tungstate ABC 85.9 0.4 1.4E-05 48.5 3.2 24 352-375 25-48 (240)
440 1fzq_A ADP-ribosylation factor 85.9 0.51 1.7E-05 44.4 3.7 24 350-373 15-38 (181)
441 3lxw_A GTPase IMAP family memb 85.9 0.44 1.5E-05 47.9 3.5 25 349-373 19-43 (247)
442 1mv5_A LMRA, multidrug resista 85.8 0.41 1.4E-05 48.3 3.3 26 350-375 27-52 (243)
443 3j2k_7 ERF3, eukaryotic polype 85.8 3 0.0001 45.7 10.5 25 350-374 16-40 (439)
444 1r8s_A ADP-ribosylation factor 85.8 0.44 1.5E-05 43.3 3.2 21 354-374 3-23 (164)
445 3kta_A Chromosome segregation 85.7 0.47 1.6E-05 44.7 3.4 24 353-376 28-51 (182)
446 2efe_B Small GTP-binding prote 85.6 0.51 1.8E-05 43.6 3.6 25 350-374 11-35 (181)
447 3t1o_A Gliding protein MGLA; G 85.6 0.44 1.5E-05 44.5 3.2 26 350-375 13-38 (198)
448 4g1u_C Hemin import ATP-bindin 85.6 0.37 1.2E-05 49.5 2.8 25 351-375 37-61 (266)
449 1pzn_A RAD51, DNA repair and r 85.6 0.46 1.6E-05 50.6 3.7 26 350-375 130-155 (349)
450 3cbq_A GTP-binding protein REM 85.5 0.4 1.4E-05 46.0 2.8 24 349-372 21-44 (195)
451 1vg8_A RAS-related protein RAB 85.5 0.53 1.8E-05 44.7 3.7 25 350-374 7-31 (207)
452 2gf9_A RAS-related protein RAB 85.5 0.63 2.1E-05 43.7 4.2 26 349-374 20-45 (189)
453 2y8e_A RAB-protein 6, GH09086P 85.4 0.47 1.6E-05 43.6 3.2 24 350-373 13-36 (179)
454 2d2e_A SUFC protein; ABC-ATPas 85.4 0.44 1.5E-05 48.3 3.2 24 351-374 29-52 (250)
455 2a9k_A RAS-related protein RAL 85.4 0.52 1.8E-05 43.6 3.5 24 350-373 17-40 (187)
456 2fna_A Conserved hypothetical 85.4 0.5 1.7E-05 48.7 3.8 32 353-387 32-63 (357)
457 1mh1_A RAC1; GTP-binding, GTPa 85.4 0.46 1.6E-05 44.0 3.2 24 350-373 4-27 (186)
458 4dcu_A GTP-binding protein ENG 85.4 0.58 2E-05 51.5 4.4 24 350-373 194-217 (456)
459 1zd9_A ADP-ribosylation factor 85.3 0.55 1.9E-05 44.3 3.7 25 349-373 20-44 (188)
460 2oil_A CATX-8, RAS-related pro 85.3 0.57 2E-05 44.1 3.8 26 349-374 23-48 (193)
461 2cxx_A Probable GTP-binding pr 85.2 0.45 1.5E-05 44.4 3.0 21 353-373 3-23 (190)
462 3t5g_A GTP-binding protein RHE 85.1 0.46 1.6E-05 44.1 3.0 24 350-373 5-28 (181)
463 2bme_A RAB4A, RAS-related prot 85.1 0.66 2.2E-05 43.1 4.1 25 350-374 9-33 (186)
464 3k1j_A LON protease, ATP-depen 85.1 0.47 1.6E-05 54.3 3.6 26 353-378 62-87 (604)
465 2ff7_A Alpha-hemolysin translo 85.0 0.4 1.4E-05 48.6 2.7 25 351-375 35-59 (247)
466 1b0u_A Histidine permease; ABC 85.0 0.41 1.4E-05 49.0 2.8 25 351-375 32-56 (262)
467 2fh5_B SR-beta, signal recogni 85.0 0.48 1.7E-05 45.5 3.2 25 350-374 6-30 (214)
468 2a5y_B CED-4; apoptosis; HET: 85.0 0.55 1.9E-05 52.9 4.1 24 350-373 151-174 (549)
469 2i1q_A DNA repair and recombin 85.0 0.45 1.6E-05 49.6 3.2 25 350-374 97-121 (322)
470 1ksh_A ARF-like protein 2; sma 85.0 0.55 1.9E-05 43.8 3.5 24 350-373 17-40 (186)
471 2h5e_A Peptide chain release f 84.9 1 3.4E-05 50.9 6.2 25 350-374 12-36 (529)
472 3tkl_A RAS-related protein RAB 84.9 0.65 2.2E-05 43.6 4.0 25 350-374 15-39 (196)
473 3tr5_A RF-3, peptide chain rel 84.9 2.4 8.3E-05 47.8 9.3 38 433-470 107-145 (528)
474 3tvt_A Disks large 1 tumor sup 84.9 2.7 9.1E-05 43.9 9.0 44 433-482 188-231 (292)
475 1p9r_A General secretion pathw 84.8 0.86 2.9E-05 50.0 5.4 29 350-378 166-194 (418)
476 3cmu_A Protein RECA, recombina 84.7 4.1 0.00014 52.9 12.2 40 350-389 1080-1119(2050)
477 2zu0_C Probable ATP-dependent 84.7 0.51 1.7E-05 48.4 3.4 24 351-374 46-69 (267)
478 2bov_A RAla, RAS-related prote 84.7 0.67 2.3E-05 43.8 4.0 25 350-374 13-37 (206)
479 2il1_A RAB12; G-protein, GDP, 84.7 0.56 1.9E-05 44.4 3.5 25 349-373 24-48 (192)
480 3llu_A RAS-related GTP-binding 84.7 0.5 1.7E-05 45.0 3.1 26 348-373 17-42 (196)
481 2olj_A Amino acid ABC transpor 84.6 0.44 1.5E-05 48.9 2.8 25 351-375 50-74 (263)
482 2ghi_A Transport protein; mult 84.6 0.44 1.5E-05 48.7 2.8 25 351-375 46-70 (260)
483 3p26_A Elongation factor 1 alp 84.6 2.5 8.6E-05 46.8 9.2 25 350-374 32-56 (483)
484 2ixe_A Antigen peptide transpo 84.6 0.44 1.5E-05 49.0 2.8 25 351-375 45-69 (271)
485 1ji0_A ABC transporter; ATP bi 84.6 0.44 1.5E-05 48.0 2.7 24 351-374 32-55 (240)
486 3gfo_A Cobalt import ATP-bindi 84.5 0.43 1.5E-05 49.4 2.7 25 351-375 34-58 (275)
487 1g6h_A High-affinity branched- 84.4 0.44 1.5E-05 48.5 2.7 25 351-375 33-57 (257)
488 1f6b_A SAR1; gtpases, N-termin 84.4 0.59 2E-05 44.8 3.5 23 350-372 24-46 (198)
489 2pze_A Cystic fibrosis transme 84.4 0.45 1.5E-05 47.6 2.7 25 351-375 34-58 (229)
490 1m2o_B GTP-binding protein SAR 84.3 0.55 1.9E-05 44.6 3.2 24 350-373 22-45 (190)
491 1x3s_A RAS-related protein RAB 84.2 0.61 2.1E-05 43.6 3.4 25 350-374 14-38 (195)
492 1zbd_A Rabphilin-3A; G protein 84.2 0.52 1.8E-05 44.8 3.0 23 351-373 8-30 (203)
493 1z6t_A APAF-1, apoptotic prote 84.1 0.73 2.5E-05 51.8 4.6 25 349-373 145-169 (591)
494 3c5c_A RAS-like protein 12; GD 84.1 0.67 2.3E-05 43.8 3.7 25 350-374 20-44 (187)
495 2h57_A ADP-ribosylation factor 84.0 0.51 1.7E-05 44.4 2.8 26 349-374 19-44 (190)
496 1dar_A EF-G, elongation factor 84.0 3.6 0.00012 47.9 10.5 38 433-470 102-140 (691)
497 2qen_A Walker-type ATPase; unk 84.0 0.6 2.1E-05 48.0 3.6 24 352-375 32-55 (350)
498 3dz8_A RAS-related protein RAB 84.0 0.6 2.1E-05 44.0 3.3 25 350-374 22-46 (191)
499 2qu8_A Putative nucleolar GTP- 84.0 0.78 2.7E-05 44.9 4.2 25 349-373 27-51 (228)
500 1ypw_A Transitional endoplasmi 83.9 0.3 1E-05 58.0 1.3 28 350-377 510-537 (806)
No 1
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=100.00 E-value=7.8e-65 Score=576.06 Aligned_cols=351 Identities=48% Similarity=0.855 Sum_probs=327.6
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
...|.+|+|+|+|||||||+|++|+++|+|.++++++|+.|++|+.+.+.....+||.+.+++.++.+++++..+++++.
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~ 111 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVK 111 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999988776556788988999999999999999999899
Q ss_pred HHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 005233 428 SWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (707)
Q Consensus 428 ~~L~-~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~R 505 (707)
.+|. +.|.+||+|+||..++.|+.++++ .+.++.++||++.|++++++++|+.+++..+|+|++. +++++.++|.+|
T Consensus 112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~-d~e~~~~~~~~R 190 (520)
T 2axn_A 112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDC-NSAEAMDDFMKR 190 (520)
T ss_dssp HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTS-CHHHHHHHHHHH
T ss_pred HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccC-CHHHHHHHHHHH
Confidence 9985 579999999999999999999888 6678899999999999999999998887778999998 899999999999
Q ss_pred HHhhhhhccCCCCC------CeeEEeecccCCccceeeecccccCCcccccccccccCCCceEEEeccccccccCCCCcC
Q 005233 506 LANYEKVYEPVDEG------SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIG 579 (707)
Q Consensus 506 i~~y~~~yEpl~e~------~yik~in~~~~~g~~~~~n~i~gyL~~rIvf~L~N~~~~~~~IyLIRHGes~~N~~~~~~ 579 (707)
++.|++.|||++++ +|||+||+ |+++++|+++|||++||+|||||+|.++++||||||||+.+|..++++
T Consensus 191 i~~y~~~Yepi~~ee~~~dl~yik~id~----g~~~~~~~~~g~l~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~ 266 (520)
T 2axn_A 191 ISCYEASYQPLDPDKCDRDLSLIKVIDV----GRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIG 266 (520)
T ss_dssp HHHHHTTCCCCCTTTTTTTSEEEEEETT----TTEEEEECCCSHHHHHHHHHHTTCCCSCCCEEEEECCCBHHHHHTBCS
T ss_pred HHhhhhhhcccChhhcccCcceEEEEcC----ccccccCCCCCCcchhhhhhhcccCCCceeEEEeecceeccccCCccC
Confidence 99999999999832 79999999 999999999999999999999999999999999999999999989999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCccccccccccccCcCCCCCHHHHHHhChH
Q 005233 580 GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDEINAGVCDGMTYEEIKKNMPE 659 (707)
Q Consensus 580 GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~g~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~ 659 (707)
||.|||+.|++||++++++|... ...++.|||||++||+|||+++ +.++..++.|+|+++|.|+|++++++.+.||+
T Consensus 267 gD~pLt~~G~~qA~~l~~~L~~~--~~~~~~v~sSpl~Ra~qTA~~i-~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~ 343 (520)
T 2axn_A 267 GDSGLSSRGKKFASALSKFVEEQ--NLKDLRVWTSQLKSTIQTAEAL-RLPYEQWKALNEIDAGVCEELTYEEIRDTYPE 343 (520)
T ss_dssp SCCCBCHHHHHHHHHHHHHHHHH--CCSCCEEEECSSHHHHHHHHTT-TSCEEECGGGSCCCCGGGTTCBHHHHHHHCHH
T ss_pred CCcccCHHHHHHHHHHHHHHHhc--CCCCCeEEeCCcHHHHHHHHHh-CCCcEEccccccccCCcccCCcHHHHHHHCHH
Confidence 99999999999999999999876 5567899999999999999998 78888999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecCC
Q 005233 660 EYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQC 707 (707)
Q Consensus 660 ~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~~~~ILVVSHgg 707 (707)
.|..|..+++.+++|+|||+.++.+|+.+++.++.+. ++|||||||+
T Consensus 344 ~~~~~~~d~~~~~~p~gEs~~~~~~Rv~~~l~~l~~~-~~vlvVsH~~ 390 (520)
T 2axn_A 344 EYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQ-ENVLVICHQA 390 (520)
T ss_dssp HHHHHHHCTTTCCCTTSCCHHHHHHHHHHHHHHHHHC-SSEEEEECHH
T ss_pred HHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHhCC-CcEEEEEChH
Confidence 9999999999999999999999999999999999875 7899999985
No 2
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=100.00 E-value=1.2e-62 Score=551.22 Aligned_cols=351 Identities=47% Similarity=0.815 Sum_probs=323.9
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
...|++|+|+|+|||||||+|++|+++|+|.+++++.++.|++|+...+......+|+..+++.++.++..+..++.++.
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999877765455678888899888888888888888888
Q ss_pred HHHh-cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 005233 428 SWMH-EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNR 505 (707)
Q Consensus 428 ~~L~-~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~R 505 (707)
.++. .+|.++|+|++|.++++|+.+++. .+.++.++|+++.|++++++.+|+.+++..+|++.+. +++++.++|.+|
T Consensus 116 ~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~-~~e~~~~~~~~R 194 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNR-DSDEATEDFMRR 194 (469)
T ss_dssp HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTS-CHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCC-CHHHHHHHHHHH
Confidence 8885 468899999999999999999887 6668899999999999999999999877778999988 899999999999
Q ss_pred HHhhhhhccCCCCC-----CeeEEeecccCCccceeeecccccCCcccccccccccCCCceEEEeccccccccCCCCcCC
Q 005233 506 LANYEKVYEPVDEG-----SYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGG 580 (707)
Q Consensus 506 i~~y~~~yEpl~e~-----~yik~in~~~~~g~~~~~n~i~gyL~~rIvf~L~N~~~~~~~IyLIRHGes~~N~~~~~~G 580 (707)
+..|++.|||++++ +|||++|+ |+++++|++.|||++||+|||||+|.++++||||||||+.+|..++++|
T Consensus 195 ~~~y~~~ye~l~~~~~~~~~~ik~~d~----~~~~~~~~~~g~~~~~~~~~l~n~~~~~~~i~LvRHGet~~n~~~~~~g 270 (469)
T 1bif_A 195 IECYENSYESLDEEQDRDLSYIKIMDV----GQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGG 270 (469)
T ss_dssp HHHHHTTCCCCCTTTTTTSCEEEEETT----TTEEEEECCCSHHHHHHHHHHTTCCCCCCCEEEEECSCBHHHHHTBCSS
T ss_pred HHHhccEeEECCccccCCcceEEEEcC----ccceeccCccccchhhHHHHHhccCCCCceEEEeccceeccccCCeeCC
Confidence 99999999999852 89999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCccccccccccccCcCCCCCHHHHHHhChHH
Q 005233 581 DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEE 660 (707)
Q Consensus 581 D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~g~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~ 660 (707)
|.|||+.|++||++++++|... +..++.|||||++||+|||+++ ++++..++.|+|+++|.|+|++++++.+.+|+.
T Consensus 271 D~~Lt~~G~~qA~~l~~~l~~~--~~~~~~v~sSpl~Ra~qTA~~l-~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~p~~ 347 (469)
T 1bif_A 271 DPGLSPRGREFSKHLAQFISDQ--NIKDLKVFTSQMKRTIQTAEAL-SVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLE 347 (469)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHH--TCTTCEEEECSSHHHHHHHTTS-SSCCEECGGGSCCCCGGGTTCBHHHHHHHCHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHh-CCCceECcccccccCCccCCCCHHHHHHHCHHH
Confidence 9999999999999999999876 5678999999999999999987 788889999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecCC
Q 005233 661 YEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQC 707 (707)
Q Consensus 661 ~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~~~~ILVVSHgg 707 (707)
+..|..+++.+++|+|||+.++.+|+.+++.++.+ +++|||||||+
T Consensus 348 ~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~-~~~vlvVsHg~ 393 (469)
T 1bif_A 348 FALRDQDKYRYRYPKGESYEDLVQRLEPVIMELER-QENVLVICHQA 393 (469)
T ss_dssp HHHHHHCTTTCCCTTCCCHHHHHHHHHHHHHHHHH-CSSEEEEECHH
T ss_pred HHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEeCHH
Confidence 99999999999999999999999999999999976 46899999985
No 3
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=99.96 E-value=9.5e-30 Score=255.15 Aligned_cols=152 Identities=28% Similarity=0.331 Sum_probs=136.5
Q ss_pred ccccCCCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c
Q 005233 553 VNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A 627 (707)
Q Consensus 553 ~N~~~~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~ 627 (707)
||.+..+++||||||||+.+|..++++| |.|||+.|++||+.++++|+.. +.+++.|||||+.||+|||+++ .
T Consensus 1 ~~~~~~~~~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~ 78 (211)
T 1fzt_A 1 MTTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSR--GYKFDIAFTSALQRAQKTCQIILEEV 78 (211)
T ss_dssp CCCTTSCCEEEECBCCCBHHHHHTBCCSSSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhc
Confidence 6788888999999999999999888888 9999999999999999999865 4589999999999999999999 3
Q ss_pred C---CCccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc----CCCc
Q 005233 628 G---FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER----QRAP 699 (707)
Q Consensus 628 g---~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~----~~~~ 699 (707)
+ .++..++.|+|+++|.|+|++.+++.+.+|+. +..|..++ .+.+|+|||+.++.+|+..++.++.. .+++
T Consensus 79 ~~~~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~w~~~~-~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~ 157 (211)
T 1fzt_A 79 GEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSY-DIAPPNGESLKDTAERVLPYYKSTIVPHILKGEK 157 (211)
T ss_dssp TCTTSEEEEESTTSCCCCGGGTTCBHHHHHHHHHHHHHHHHHSSS-SCCSTTCCCHHHHHHHHHHHHHHHHTTHHHHTCC
T ss_pred CCCCCceEECcccccccCceecCCCHHHHHHhccHHHHHHHhhCC-CcCCcCCCCHHHHHHHHHHHHHHHHhhhhcCCCe
Confidence 3 67888999999999999999999999999875 66676654 78899999999999999999999854 3678
Q ss_pred EEEEecCC
Q 005233 700 VVVISHQC 707 (707)
Q Consensus 700 ILVVSHgg 707 (707)
|||||||+
T Consensus 158 vlvVsHg~ 165 (211)
T 1fzt_A 158 VLIAAHGN 165 (211)
T ss_dssp EEEESCHH
T ss_pred EEEEeChH
Confidence 99999985
No 4
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=99.96 E-value=1.3e-29 Score=253.90 Aligned_cols=144 Identities=31% Similarity=0.421 Sum_probs=133.4
Q ss_pred ceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccc
Q 005233 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQW 634 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v~~~ 634 (707)
|+||||||||+.+|..++++| |.|||+.|++||+++++.|+ ..+++.|||||+.||+|||+++ .++++..+
T Consensus 2 m~l~lvRHGet~~n~~~~~~g~~D~pLt~~G~~qA~~~~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 77 (207)
T 1h2e_A 2 TTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLE----AVELAAIYTSTSGRALETAEIVRGGRLIPIYQD 77 (207)
T ss_dssp EEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHTT----TSCCSEEEECSSHHHHHHHHHHHTTCSCCEEEC
T ss_pred CEEEEEeCcCCcccccccCCCCCCCCCCHHHHHHHHHHHHHHc----CCCCCEEEECccHHHHHHHHHHHhcCCCCeEEC
Confidence 589999999999999888888 99999999999999997765 4589999999999999999999 45788899
Q ss_pred ccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEEecCC
Q 005233 635 RALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ--RAPVVVISHQC 707 (707)
Q Consensus 635 ~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~--~~~ILVVSHgg 707 (707)
+.|+|+++|.|+|++.+++.+.+|+.|..|..++..+.+|+|||+.++.+|+..++.++.+. +++|||||||+
T Consensus 78 ~~L~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg~ 152 (207)
T 1h2e_A 78 ERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGV 152 (207)
T ss_dssp GGGSCCCCGGGTTCBHHHHHHHCHHHHHHHHHCGGGCCCSSSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEECHH
T ss_pred cccccCCceecCCCCHHHHHHHCHHHHHHHhhCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEcCHH
Confidence 99999999999999999999999999999999998999999999999999999999999653 57999999985
No 5
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=99.96 E-value=4.7e-29 Score=250.34 Aligned_cols=147 Identities=24% Similarity=0.306 Sum_probs=127.5
Q ss_pred cccccCCCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCC
Q 005233 552 LVNTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGF 629 (707)
Q Consensus 552 L~N~~~~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~g~ 629 (707)
|||++..+++||||||||+.+|..++++| |.|||+.|++||+.++++|... ...++.|||||+.||+|||+++ ++
T Consensus 3 ~m~M~~~~~~l~lvRHG~t~~n~~~~~~g~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~~-~~ 79 (208)
T 2a6p_A 3 AMAMGVRNHRLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGEL--ELDDPIVICSPRRRTLDTAKLA-GL 79 (208)
T ss_dssp ------CCCCEEEEECCCBTTGGGTBCCSSCCCCBCHHHHHHHHHHHHHHHTT--CCSSCEEEECSSHHHHHHHHHT-TC
T ss_pred ccccCCCceEEEEEeCCCCcccccCcCcCCCCCCCCHHHHHHHHHHHHHHhcC--CCCCCEEEECCcHHHHHHHHHh-CC
Confidence 56766667899999999999999888888 9999999999999999988744 3344999999999999999994 78
Q ss_pred Cc-cccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc--CCCcEEEEecC
Q 005233 630 PK-IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER--QRAPVVVISHQ 706 (707)
Q Consensus 630 ~v-~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~--~~~~ILVVSHg 706 (707)
++ ..++.|+|+++|.|+|++.+++.+.+|+ |..|..++ |+|||+.++.+|+..++.++.+ .+++|||||||
T Consensus 80 ~~~~~~~~L~E~~~G~~eg~~~~el~~~~p~-~~~~~~~~-----p~gEs~~~~~~R~~~~l~~l~~~~~~~~vlvVsHg 153 (208)
T 2a6p_A 80 TVNEVTGLLAEWDYGSYEGLTTPQIRESEPD-WLVWTHGC-----PAGESVAQVNDRADSAVALALEHMSSRDVLFVSHG 153 (208)
T ss_dssp CCSEECGGGCCCCCGGGTTCBHHHHHTTCTT-CCHHHHCC-----TTSCCHHHHHHHHHHHHHHHHHHTTTSCEEEEECH
T ss_pred CceeeccceeecccceeCCCCHHHHHHhCcc-hhhccCCC-----CCCCCHHHHHHHHHHHHHHHHHhCCCCcEEEEeCH
Confidence 88 8899999999999999999999999998 88887664 8999999999999999999975 46799999998
Q ss_pred C
Q 005233 707 C 707 (707)
Q Consensus 707 g 707 (707)
+
T Consensus 154 ~ 154 (208)
T 2a6p_A 154 H 154 (208)
T ss_dssp H
T ss_pred H
Confidence 5
No 6
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=99.95 E-value=5e-28 Score=248.33 Aligned_cols=147 Identities=25% Similarity=0.298 Sum_probs=128.1
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g---~~ 630 (707)
|++||||||||+.+|..++++| |.|||+.|++||+.+++.|+.. +.+++.|||||+.||+|||+++ .+ .+
T Consensus 2 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~l~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 79 (249)
T 1e58_A 2 VTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEE--GYSFDFAYTSVLKRAIHTLWNVLDELDQAWLP 79 (249)
T ss_dssp CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCcccccCCccCcCCCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 5789999999999999999888 9999999999999999999764 5689999999999999999999 23 67
Q ss_pred ccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHHH
Q 005233 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQR 685 (707)
Q Consensus 631 v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~------------------------~~~r~PgGES~~dv~~R 685 (707)
+..+++|+|+++|.|+|++.+++.+.+|.. +..|..+. ....+|+|||+.++.+|
T Consensus 80 ~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 159 (249)
T 1e58_A 80 VEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR 159 (249)
T ss_dssp EEECGGGCCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTSTTCGGGSGGGTTCCTTTSCSCCCHHHHHHH
T ss_pred eeeCcccccccCcccCCCcHHHHHHHhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999875 56665431 12357999999999999
Q ss_pred HHHHHHH-HHc---CCCcEEEEecCC
Q 005233 686 LEPVIIE-LER---QRAPVVVISHQC 707 (707)
Q Consensus 686 v~~~l~e-L~~---~~~~ILVVSHgg 707 (707)
+..++.+ +.. .+++|||||||+
T Consensus 160 v~~~l~~~i~~~~~~~~~vlvVsHg~ 185 (249)
T 1e58_A 160 VIPYWNETILPRMKSGERVIIAAHGN 185 (249)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHhhccCCCEEEEEcChH
Confidence 9999999 643 567999999985
No 7
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=99.95 E-value=4.7e-28 Score=249.60 Aligned_cols=152 Identities=27% Similarity=0.379 Sum_probs=130.1
Q ss_pred cccCCCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC
Q 005233 554 NTHLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG 628 (707)
Q Consensus 554 N~~~~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g 628 (707)
+-++.+++||||||||+.+|..++++| |+|||+.|++||+.++++|+.. +..++.|||||++||+|||+++ .+
T Consensus 6 ~~~~~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~ 83 (258)
T 3kkk_A 6 HHHMTTYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEK--NFKFDVVYTSVLKRAICTAWNVLKTAD 83 (258)
T ss_dssp ----CCEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccccceeEEEEEECCCccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECchHHHHHHHHHHHHhcC
Confidence 345677999999999999999999988 9999999999999999999864 5689999999999999999999 33
Q ss_pred ---CCccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------------------CCCCCCCCCCHH
Q 005233 629 ---FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYL 680 (707)
Q Consensus 629 ---~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~------------------------~~~r~PgGES~~ 680 (707)
+++..++.|+|+++|.|+|++.+++.+.+|+. +..|.... ...++|+|||+.
T Consensus 84 ~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~ 163 (258)
T 3kkk_A 84 LLHVPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLK 163 (258)
T ss_dssp CTTSCEEECGGGCCCCCGGGTTSBHHHHHHHTCHHHHHHHHHCSSCCCCCCCTTSTTCGGGCGGGTTSCGGGSCSCCCHH
T ss_pred CCCCCeeEccccceeccCcccCCCHHHHHHHhHHHHHHHHhhhcccCCcccccccccccccccccccccccCCCCCCCHH
Confidence 68889999999999999999999999999986 55665421 113478999999
Q ss_pred HHHHHHHHHHHHHH----cCCCcEEEEecCC
Q 005233 681 DVIQRLEPVIIELE----RQRAPVVVISHQC 707 (707)
Q Consensus 681 dv~~Rv~~~l~eL~----~~~~~ILVVSHgg 707 (707)
++.+|+..++.++. ..+++|||||||+
T Consensus 164 ~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~ 194 (258)
T 3kkk_A 164 DTVERVLPFWFDHIAPDILANKKVMVAAHGN 194 (258)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCEEEEEcCHH
Confidence 99999999999953 3578999999985
No 8
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=99.95 E-value=4.9e-28 Score=243.75 Aligned_cols=143 Identities=20% Similarity=0.239 Sum_probs=126.9
Q ss_pred CCCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCc
Q 005233 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPK 631 (707)
Q Consensus 557 ~~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v 631 (707)
|++++||||||||+.+| ++++| |.|||+.|++||+.+++.| +.+++.|||||++||+|||+++ .++++
T Consensus 3 m~~~~i~lvRHGet~~n--~~~~g~~D~pLt~~G~~QA~~~~~~l-----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 75 (213)
T 3hjg_A 3 LKTLNIYLMRHGKVDAA--PGLHGQTDLKVKEAEQQQIAMAWKTK-----GYDVAGIISSPLSRCHDLAQILAEQQLLPM 75 (213)
T ss_dssp -CEEEEEEEECCCCSSC--SBCCSSSCCCCCHHHHHHHHHHHHHT-----TCCCSCEEECSSHHHHHHHHHHHHHHTCCE
T ss_pred CceeEEEEECCCCcCCC--CcccCCCCCCCCHHHHHHHHHHHHhc-----CCCCCEEEECChHHHHHHHHHHHhccCCCc
Confidence 56789999999999998 35666 9999999999999998665 3689999999999999999999 57899
Q ss_pred cccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEecCC
Q 005233 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-RAPVVVISHQC 707 (707)
Q Consensus 632 ~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~-~~~ILVVSHgg 707 (707)
.+++.|+|+++|.|+|++.+++.+.+|. +..|+.++..+.+|+|||+.++.+|+..+++++.++ .++|||||||+
T Consensus 76 ~~~~~L~E~~~G~~eg~~~~e~~~~~~~-~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~vlvVsHg~ 151 (213)
T 3hjg_A 76 TTEDDLQEMDFGDFDGMPFDLLTEHWKK-LDAFWQSPAHHSLPNAESLSTFSQRVSRAWSQIINDINDNLLIVTHGG 151 (213)
T ss_dssp EECGGGSCCCCTTSTTCBTTHHHHSCCC-THHHHHCGGGCCCTTCCCHHHHHHHHHHHHHHHHHHCCSCEEEEECHH
T ss_pred EEccccEeCcCCccCCcCHHHHHHhhHH-HHHHHhCcccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCHH
Confidence 9999999999999999999999998765 556677888899999999999999999999998653 48999999985
No 9
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=99.95 E-value=8.2e-28 Score=249.99 Aligned_cols=149 Identities=28% Similarity=0.368 Sum_probs=128.1
Q ss_pred CCCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---
Q 005233 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG--- 628 (707)
Q Consensus 557 ~~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g--- 628 (707)
|++++||||||||+.+|..++++| |.|||+.|++||+.+++.|+.. +..++.|||||+.||+|||+++ .+
T Consensus 1 M~~~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~ 78 (267)
T 2hhj_A 1 MSKYKLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKAL--NFEFDLVFTSVLNRSIHTAWLILEELGQEW 78 (267)
T ss_dssp -CCEEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTT
T ss_pred CCceEEEEEeCCCCCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCC
Confidence 346899999999999999999988 9999999999999999999764 4689999999999999999999 22
Q ss_pred CCccccccccccccCcCCCCCHHHHHHhChHH-HHHHhc--------------------CcCCC--------CCCCCCCH
Q 005233 629 FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKK--------------------DKLRY--------RYPRGESY 679 (707)
Q Consensus 629 ~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~--------------------d~~~~--------r~PgGES~ 679 (707)
+++..+++|+|+++|.|+|++.+++.+.+|+. +..|.. .+..+ .+|+|||+
T Consensus 79 ~~v~~~~~L~E~~~G~~eG~~~~e~~~~~p~~~~~~w~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~gEs~ 158 (267)
T 2hhj_A 79 VPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESL 158 (267)
T ss_dssp SCEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTSSSSCGGGSCSSCCH
T ss_pred CCeeEcccccccccCCCCCCCHHHHHHHhhHHHHHHHHhcccCCCCcccccccccccccccccccccccccCCCCCCCCH
Confidence 67888999999999999999999999999976 556642 11122 26899999
Q ss_pred HHHHHHHHHHHHH-HHc---CCCcEEEEecCC
Q 005233 680 LDVIQRLEPVIIE-LER---QRAPVVVISHQC 707 (707)
Q Consensus 680 ~dv~~Rv~~~l~e-L~~---~~~~ILVVSHgg 707 (707)
.++.+|+..++.+ +.. .+++|||||||+
T Consensus 159 ~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~ 190 (267)
T 2hhj_A 159 KDVLERLLPYWNERIAPEVLRGKTILISAHGN 190 (267)
T ss_dssp HHHHHHHHHHHHHHTHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEEEcCcH
Confidence 9999999999999 643 467999999985
No 10
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=99.95 E-value=2e-27 Score=247.31 Aligned_cols=147 Identities=25% Similarity=0.367 Sum_probs=127.9
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g---~~ 630 (707)
|++||||||||+.+|..++++| |.|||+.|++||+.+++.|+.. +.+++.|||||++||+|||+++ .+ .+
T Consensus 20 M~~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (267)
T 3d8h_A 20 TYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEK--GFKFDVVYTSVLKRAIMTTWTVLKELGNINCP 97 (267)
T ss_dssp CEEEEEEECCCBTTTTTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCTTSC
T ss_pred ceEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCCC
Confidence 4799999999999999999988 9999999999999999999764 4689999999999999999998 23 67
Q ss_pred ccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHHH
Q 005233 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQR 685 (707)
Q Consensus 631 v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~------------------------~~~r~PgGES~~dv~~R 685 (707)
+.++++|+|+++|.|+|++.+++.+.+|.. +..|..+. ..+.+|+|||+.++.+|
T Consensus 98 i~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R 177 (267)
T 3d8h_A 98 IINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVER 177 (267)
T ss_dssp EEECGGGSCCCCGGGTTCBHHHHHHHSCHHHHHHHHHCSSCCCCCCCTTSTTSGGGSGGGTTSCGGGSCSCCCHHHHHHH
T ss_pred eeECcccccccCCcccCCCHHHHHHhhhHHHHHHHHhccccCCcccccccccccccchhhhccccCCCCCCCCHHHHHHH
Confidence 888999999999999999999999999975 55664321 01356899999999999
Q ss_pred HHHHHHH-HHc---CCCcEEEEecCC
Q 005233 686 LEPVIIE-LER---QRAPVVVISHQC 707 (707)
Q Consensus 686 v~~~l~e-L~~---~~~~ILVVSHgg 707 (707)
+..++++ +.. .+++|||||||+
T Consensus 178 v~~~l~~~i~~~~~~~~~vlvVsHg~ 203 (267)
T 3d8h_A 178 VKPYFEDVIAPSIMSGKSVLVSAHGN 203 (267)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHhhccCCCeEEEEeCHH
Confidence 9999999 543 567999999985
No 11
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=99.95 E-value=1.1e-27 Score=246.97 Aligned_cols=150 Identities=24% Similarity=0.303 Sum_probs=129.9
Q ss_pred cCCCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC--
Q 005233 556 HLTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG-- 628 (707)
Q Consensus 556 ~~~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g-- 628 (707)
|..|.+.||||||||+||..++++| |+|||+.|++||+.++++|+.. +.+++.|||||+.||+|||+++ .+
T Consensus 6 ~~~~~~~~lvRHGeT~~N~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 83 (257)
T 3gp3_A 6 HHHMYKLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEA--GYTFDIAYTSVLKRAIRTLWHVQDQMDLM 83 (257)
T ss_dssp ---CEEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHHTCT
T ss_pred ccceeeEEEEECCCCcccccCccCCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEeCChHHHHHHHHHHHHhcCCC
Confidence 3446789999999999999999999 9999999999999999999865 4689999999999999999999 33
Q ss_pred -CCccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcC------------------------CCCCCCCCCHHHH
Q 005233 629 -FPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------------RYRYPRGESYLDV 682 (707)
Q Consensus 629 -~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~~------------------------~~r~PgGES~~dv 682 (707)
.++.+++.|+|+++|.|+|++.+++.+.+|+. +..|..+.. .+++|+|||+.++
T Consensus 84 ~~~i~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~ 163 (257)
T 3gp3_A 84 YVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDT 163 (257)
T ss_dssp TSCEEECGGGSCCCCGGGTTCBHHHHHHHHCHHHHHHHHHCTTCCCCCCCTTCTTCSTTCGGGTTSCGGGSCSSCCHHHH
T ss_pred CCceeECCCccccCCccccCCCHHHHHHHhhHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHH
Confidence 78899999999999999999999999999976 566654311 2357899999999
Q ss_pred HHHHHHHHHHHHc----CCCcEEEEecCC
Q 005233 683 IQRLEPVIIELER----QRAPVVVISHQC 707 (707)
Q Consensus 683 ~~Rv~~~l~eL~~----~~~~ILVVSHgg 707 (707)
.+|+..++.++.. .+++|||||||+
T Consensus 164 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~ 192 (257)
T 3gp3_A 164 VARVLPLWNESIAPAVKAGKQVLIAAHGN 192 (257)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeCcH
Confidence 9999999999743 578999999985
No 12
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=99.95 E-value=2.9e-27 Score=245.18 Aligned_cols=148 Identities=26% Similarity=0.294 Sum_probs=127.3
Q ss_pred CCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---C
Q 005233 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (707)
Q Consensus 558 ~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g---~ 629 (707)
.|++||||||||+.+|..++++| |.|||+.|++||+.+++.|++. +..++.|||||+.||+|||+++ .+ .
T Consensus 2 ~M~~l~LvRHGqt~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~ 79 (262)
T 1yfk_A 2 AAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDA--GYEFDICFTSVQKRAIRTLWTVLDAIDQMWL 79 (262)
T ss_dssp -CEEEEEEECCCBTTTTTTBCCTTSCCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCCcccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhC--CCCCCEEEECCcHHHHHHHHHHHHhcCCCCC
Confidence 46799999999999999999988 9999999999999999999865 5689999999999999999999 23 6
Q ss_pred CccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc--------------------CC------CCCCCCCCHHHH
Q 005233 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK--------------------LR------YRYPRGESYLDV 682 (707)
Q Consensus 630 ~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~--------------------~~------~r~PgGES~~dv 682 (707)
++..++.|+|+++|.|+|++.+++.+.+|+. +..|..+. .. ..+|+|||+.++
T Consensus 80 ~v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~i~~d~~~~~~~~~~~p~gEs~~~~ 159 (262)
T 1yfk_A 80 PVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDT 159 (262)
T ss_dssp CEEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTHHHHHTCGGGTTSCTTTSCSCCCHHHH
T ss_pred CeeeCcccccccCcccCCCcHHHHHHHccHHHHHHHHhccccCCCcccccccccccccccccccccccCCCCCCCCHHHH
Confidence 7888999999999999999999999999865 45564321 01 246899999999
Q ss_pred HHHHHHHHHHHH----cCCCcEEEEecCC
Q 005233 683 IQRLEPVIIELE----RQRAPVVVISHQC 707 (707)
Q Consensus 683 ~~Rv~~~l~eL~----~~~~~ILVVSHgg 707 (707)
.+|+..++.++. ..+++|||||||+
T Consensus 160 ~~Rv~~~l~~li~~~~~~~~~vlvVsHg~ 188 (262)
T 1yfk_A 160 IARALPFWNEEIVPQIKEGKRVLIAAHGN 188 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEEcChH
Confidence 999999999953 2567999999985
No 13
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=99.94 E-value=2.5e-27 Score=247.12 Aligned_cols=148 Identities=23% Similarity=0.235 Sum_probs=129.4
Q ss_pred CCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---C
Q 005233 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---F 629 (707)
Q Consensus 558 ~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g---~ 629 (707)
.+++||||||||+.+|..++++| |+|||+.|++||+.+++.|++. ..+++.|||||++||+|||+++ .+ .
T Consensus 26 mm~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~ 103 (274)
T 4emb_A 26 FMYKLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQE--GYSFDIAFSSLLSRANDTLNIILRELGQSYI 103 (274)
T ss_dssp CCEEEEEEECCCBTTTTTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTS
T ss_pred hceEEEEEeCCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhcCCCCC
Confidence 35889999999999999999988 9999999999999999999765 5689999999999999999999 33 6
Q ss_pred CccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHH
Q 005233 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQ 684 (707)
Q Consensus 630 ~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~------------------------~~~r~PgGES~~dv~~ 684 (707)
++..++.|+|+++|.|+|++.+++.+.+|+. +..|.... ..+++|+|||+.++.+
T Consensus 104 ~~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~pp~~~~~~~~~~~~d~~~~~~~~~~~p~gEs~~~~~~ 183 (274)
T 4emb_A 104 SVKKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTVA 183 (274)
T ss_dssp EEEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCGGGSGGGTTSCGGGSCSCCCHHHHHH
T ss_pred CeeECccccccccccccCCCHHHHHHHhHHHHHHHHHhccccCCcccccccccccccccccccccccCCCCCCCHHHHHH
Confidence 7888999999999999999999999999975 55665421 1236799999999999
Q ss_pred HHHHHHHHHHc----CCCcEEEEecCC
Q 005233 685 RLEPVIIELER----QRAPVVVISHQC 707 (707)
Q Consensus 685 Rv~~~l~eL~~----~~~~ILVVSHgg 707 (707)
|+..++.++.. .+++|||||||+
T Consensus 184 Rv~~~l~~l~~~~~~~~~~vlvVsHg~ 210 (274)
T 4emb_A 184 RVIPYWTDEIAKEVLEGKKVIVAAHGN 210 (274)
T ss_dssp HHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHhhhhcCCCEEEEEeCHH
Confidence 99999999743 578999999985
No 14
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=99.94 E-value=3.2e-27 Score=241.12 Aligned_cols=146 Identities=27% Similarity=0.342 Sum_probs=126.1
Q ss_pred ceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CCc
Q 005233 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FPK 631 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g---~~v 631 (707)
|+||||||||+.+|..++++| |.|||+.|++||+.+++.|+.. +.+++.|||||++||+|||+++ .+ .++
T Consensus 1 m~l~LvRHGet~~n~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~ 78 (240)
T 1qhf_A 1 PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEK--KVYPDVLYTSKLSRAIQTANIALEKADRLWIPV 78 (240)
T ss_dssp CEEEEEECCCBHHHHTTBCCTTSCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSCE
T ss_pred CEEEEEECCCcccccCCcccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCcCEEEECCcHHHHHHHHHHHHhcCCCCCCe
Confidence 579999999999999988888 9999999999999999999764 5689999999999999999998 22 678
Q ss_pred cccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCc------------------------CCCCCCCCCCHHHHHHHH
Q 005233 632 IQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDK------------------------LRYRYPRGESYLDVIQRL 686 (707)
Q Consensus 632 ~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~------------------------~~~r~PgGES~~dv~~Rv 686 (707)
..++.|+|+++|.|+|++.+++.+.+|+. +..|..+. ....+|+|||+.++.+|+
T Consensus 79 ~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~ 158 (240)
T 1qhf_A 79 NRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRL 158 (240)
T ss_dssp EECGGGSCCCCGGGTTCBHHHHHHHHHHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGTTSCGGGSCSSCCHHHHHHHH
T ss_pred eeCcccccccCCcccCCcHHHHHHHhhHHHHHHHhhccccCCccccccchhhcccchhhcccccCCCCCCCCHHHHHHHH
Confidence 88999999999999999999999999865 45564321 013468999999999999
Q ss_pred HHHHHH-HHc---CCCcEEEEecCC
Q 005233 687 EPVIIE-LER---QRAPVVVISHQC 707 (707)
Q Consensus 687 ~~~l~e-L~~---~~~~ILVVSHgg 707 (707)
..++++ +.+ .+++|||||||+
T Consensus 159 ~~~l~~~i~~~~~~~~~vlvVsHg~ 183 (240)
T 1qhf_A 159 LPYWQDVIAKDLLSGKTVMIAAHGN 183 (240)
T ss_dssp HHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHhhccCCCEEEEEeCHH
Confidence 999998 643 467899999985
No 15
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=99.94 E-value=3.6e-27 Score=245.62 Aligned_cols=147 Identities=28% Similarity=0.376 Sum_probs=126.9
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g---~~ 630 (707)
|++||||||||+.||..++++| |.|||+.|++||+.+++.|++. +..++.|||||++||+|||+++ .+ ++
T Consensus 4 m~~l~LvRHGet~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~--~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 81 (265)
T 1rii_A 4 TGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEH--DLLPDVLYTSLLRRAITTAHLALDSADRLWIP 81 (265)
T ss_dssp CCEEEEEECCCBHHHHTTBCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSCHHHHHHHHHHHHHTTCTTSC
T ss_pred ceEEEEEeCCCCcccccCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHHcCCCCCC
Confidence 5799999999999999999988 9999999999999999999764 5689999999999999999998 33 67
Q ss_pred ccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcC------------------CCC----CCCCCCHHHHHHHHH
Q 005233 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKL------------------RYR----YPRGESYLDVIQRLE 687 (707)
Q Consensus 631 v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~~------------------~~r----~PgGES~~dv~~Rv~ 687 (707)
+..+++|+|+++|.|+|++.+++.+.||++ +..|..+.. .|. .|+|||+.++.+|+.
T Consensus 82 v~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv~ 161 (265)
T 1rii_A 82 VRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTECLADVVARFL 161 (265)
T ss_dssp EEECGGGSCCCCGGGTTSBHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTCTTCCTTCGGGGGGTTCCSCCCHHHHHHHHH
T ss_pred eeECccccccccccccCCCHHHHHHHchHHHHHHHHhccccCCCccccccccccccchhhccCCCCCCCCCHHHHHHHHH
Confidence 888999999999999999999999999875 456654210 111 189999999999999
Q ss_pred HHHHH-HHc---CCCcEEEEecCC
Q 005233 688 PVIIE-LER---QRAPVVVISHQC 707 (707)
Q Consensus 688 ~~l~e-L~~---~~~~ILVVSHgg 707 (707)
++|.+ +.. .+++|||||||+
T Consensus 162 ~~l~~~i~~~~~~~~~vlvVsHg~ 185 (265)
T 1rii_A 162 PYFTDVIVGDLRVGKTVLIVAHGN 185 (265)
T ss_dssp HHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHhccCCCeEEEEeChH
Confidence 99998 643 577999999985
No 16
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=99.94 E-value=6.3e-27 Score=243.45 Aligned_cols=147 Identities=27% Similarity=0.352 Sum_probs=128.0
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC---CC
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG---FP 630 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g---~~ 630 (707)
+++||||||||+.+|..++++| |+|||+.|++||+.+++.|++. ..+++.|||||++||+|||+++ .+ ++
T Consensus 27 ~~~i~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 104 (268)
T 4eo9_A 27 TATLILLRHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEH--NLLPDVLYTSLLRRAITTAHLALDTADWLWIP 104 (268)
T ss_dssp CEEEEEEECCCBHHHHTTCCCTTCCCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHHHHHTTCTTSC
T ss_pred ceEEEEEECCccccccCCCccCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECCcHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999999988 9999999999999999998765 5689999999999999999998 33 78
Q ss_pred ccccccccccccCcCCCCCHHHHHHhChHH-HHHHhcCcCCC----------------------CCCCCCCHHHHHHHHH
Q 005233 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEE-YEARKKDKLRY----------------------RYPRGESYLDVIQRLE 687 (707)
Q Consensus 631 v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-~~~~~~d~~~~----------------------r~PgGES~~dv~~Rv~ 687 (707)
+.+++.|+|+++|.|+|++.+++.+.+|+. +..|..+.... ++|+|||+.++.+|+.
T Consensus 105 ~~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~gEs~~~~~~Rv~ 184 (268)
T 4eo9_A 105 VRRSWRLNERHYGALQGLDKAVTKARYGEERFMAWRRSYDTPPPPIEKGSEFSQDADPRYTDIGGGPLTECLADVVTRFL 184 (268)
T ss_dssp EEECGGGSCCCCGGGTTCCHHHHHHHHCHHHHHHHHHCSSCCCCCCCTTSTTCCTTCGGGGGGTTCCSCCCHHHHHHHHH
T ss_pred eEECccccccccCCcCCCCHHHHHHHccHHHHHHhhcccccCCccccccccccccccccccccCCCCCCCCHHHHHHHHH
Confidence 899999999999999999999999999975 66676542211 3589999999999999
Q ss_pred HHHHHHH----cCCCcEEEEecCC
Q 005233 688 PVIIELE----RQRAPVVVISHQC 707 (707)
Q Consensus 688 ~~l~eL~----~~~~~ILVVSHgg 707 (707)
.++.++. ..+++|||||||+
T Consensus 185 ~~l~~~i~~~~~~~~~vlvVsHg~ 208 (268)
T 4eo9_A 185 PYFTDVIVPDLRTGRTVLIVAHGN 208 (268)
T ss_dssp HHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHhccCCCEEEEEeCHH
Confidence 9998842 2578999999985
No 17
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=8.6e-27 Score=236.31 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=123.0
Q ss_pred cccCCCceEEEeccccccccCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCC
Q 005233 554 NTHLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP 630 (707)
Q Consensus 554 N~~~~~~~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~ 630 (707)
|+..+||+||||||||+.+|..+++ .|.|||+.|++||+.+++.|+.. +++.|||||+.||+|||+++ .+++
T Consensus 16 ~~~~~mm~l~LvRHGet~~n~~~~~-~D~pLt~~G~~QA~~l~~~L~~~----~~d~i~sSpl~Ra~qTA~~i~~~~~~~ 90 (219)
T 2qni_A 16 NLYFQGMHALYITHPQVKIDPAVPV-PEWGLSERGAERAREASRLPWAK----ALRRIVSSAETKAIETAHMLAETSGAA 90 (219)
T ss_dssp -----CCEEEEEECCCBCCCSSSCG-GGCCBCHHHHHHHHHHHTSHHHH----TCCEEEECSSHHHHHHHHHHTTTTCCE
T ss_pred hhhhcCcEEEEEeCCCCcccccCcc-CCCCcCHHHHHHHHHHHHHHhcC----CCCEEEECCcHHHHHHHHHHHHhcCCC
Confidence 4445568999999999999988776 49999999999999999988754 79999999999999999999 4678
Q ss_pred ccccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC---CCcEEEEecCC
Q 005233 631 KIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ---RAPVVVISHQC 707 (707)
Q Consensus 631 v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~---~~~ILVVSHgg 707 (707)
+.+++.|+|+++|.|+|++.+++. +.+..|..++ .+.+|+|||+.++.+|+..++.++.++ +++|||||||+
T Consensus 91 ~~~~~~L~E~~~G~~eg~~~~~~~----~~~~~~~~~~-~~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~~vlvVsHg~ 165 (219)
T 2qni_A 91 IEIIEAMHENDRSATGFLPPPEFE----KAADWFFAHP-EESFQGWERAIDAQARIVEAVKAVLDRHDARQPIAFVGHGG 165 (219)
T ss_dssp EEECGGGCCCCCGGGCCCCHHHHH----HHHHHHHHCT-TSCSTTCCCHHHHHHHHHHHHHHHHHTCCTTSCEEEEECHH
T ss_pred EEECcccccCCCccccCccHHHHH----HHHHHHHhCc-ccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEeCHH
Confidence 889999999999999999998865 4567777765 377899999999999999999999764 25899999985
No 18
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=99.94 E-value=3.5e-27 Score=244.95 Aligned_cols=131 Identities=28% Similarity=0.338 Sum_probs=84.0
Q ss_pred CCCceEEEeccccccccCCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c---
Q 005233 557 LTPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A--- 627 (707)
Q Consensus 557 ~~~~~IyLIRHGes~~N~~~~~~G---D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~--- 627 (707)
|..++||||||||+.+|..++++| |+|||+.|++||+.++++|. ..+++.|||||++||+|||+++ .
T Consensus 1 m~~~~l~LvRHGet~~n~~~~~~G~~~D~pLt~~G~~QA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~ 76 (265)
T 3e9c_A 1 MLTFALTIVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLK----DLHFTNVFVSNLQRAIQTAEIILGNNLHS 76 (265)
T ss_dssp CEEEEEEEEECCCC-------------CCCCCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHHTCSSC
T ss_pred CcccEEEEEeCCCccccccCcccCCCCCCCcCHHHHHHHHHHHHHHh----cCCCCEEEECCcHHHHHHHHHHHHhcccc
Confidence 345889999999999999988877 99999999999999997774 5689999999999999999999 2
Q ss_pred -CCCccccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc
Q 005233 628 -GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER 695 (707)
Q Consensus 628 -g~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~ 695 (707)
++++.+++.|+|+++|.|+|++.+++.+.++ .|..++..+++|+|||+.++..|+..++++|.+
T Consensus 77 ~~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~----~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~ 141 (265)
T 3e9c_A 77 SATEMILDPLLRERGFGVAEGRPKEHLKNMAN----AAGQSCRDYTPPGGETLEQVKTRFKMFLKSLFQ 141 (265)
T ss_dssp TTCCEEECGGGSCCCCC---------------------------------CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEECccceeCcCCCCCCCCHHHHHHHHH----HhccCCccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999988765 355566778999999999999999999999854
No 19
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=99.94 E-value=3.3e-27 Score=231.25 Aligned_cols=133 Identities=30% Similarity=0.400 Sum_probs=120.8
Q ss_pred ceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhcCCCccccccc
Q 005233 560 RPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIAGFPKIQWRAL 637 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~g~~v~~~~~L 637 (707)
|+||||||||+.+|..++++| |.|||+.|++||+.++++|+ ..+ |||||+.||+|||+++ +.++..++.|
T Consensus 1 m~l~lvRHG~t~~n~~~~~~g~~d~pLt~~G~~qA~~l~~~l~----~~~---i~sSpl~Ra~qTA~~l-~~~~~~~~~L 72 (177)
T 1v37_A 1 MELWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALP----SLP---AFSSDLLRARRTAELA-GFSPRLYPEL 72 (177)
T ss_dssp CEEEEEECCCCHHHHHTBCCSSCCCCCCHHHHHHHHHHTTTSC----SCC---EEECSSHHHHHHHHHT-TCCCEECGGG
T ss_pred CEEEEEeCCCCcccccCcccCCCCCCcCHHHHHHHHHHHHHhc----CCC---EEECCcHHHHHHHHHh-CCCcEECccc
Confidence 579999999999998888888 99999999999999997664 223 9999999999999994 7888899999
Q ss_pred cccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecCC
Q 005233 638 DEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQC 707 (707)
Q Consensus 638 ~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~~~~ILVVSHgg 707 (707)
+|+++|.|+|++.+++.+.+|+.|..| ..+.+|+|||+.++.+|+..++.++ + ++|||||||+
T Consensus 73 ~E~~~G~~eg~~~~e~~~~~~~~~~~~----~~~~~p~gEs~~~~~~R~~~~l~~l-~--~~vlvVsHg~ 135 (177)
T 1v37_A 73 REIHFGALEGALWETLDPRYKEALLRF----QGFHPPGGESLSAFQERVFRFLEGL-K--APAVLFTHGG 135 (177)
T ss_dssp SCCCCGGGTTCBGGGSCHHHHHHHHTT----CSCCCTTSCCHHHHHHHHHHHHHHC-C--SCEEEEECHH
T ss_pred eeCCCCcccCCCHHHHHHHCHHHHHHh----hcCCCCCCCCHHHHHHHHHHHHHHc-C--CCEEEEcCHH
Confidence 999999999999999999999988877 4678899999999999999999999 5 7899999985
No 20
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=99.93 E-value=7.3e-27 Score=237.78 Aligned_cols=144 Identities=20% Similarity=0.236 Sum_probs=123.7
Q ss_pred CCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc------CC
Q 005233 558 TPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA------GF 629 (707)
Q Consensus 558 ~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~------g~ 629 (707)
++++||||||||+.+|..++++| |+|||+.|++||+.+++.|. ..+++.|||||++||+|||+++. +.
T Consensus 12 ~~~~l~lvRHGet~~n~~~~~~G~~D~pLt~~G~~qA~~l~~~l~----~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 87 (237)
T 3r7a_A 12 NVVTLYVTRHGKTILNTNHRAQGWADSPLVEKGVEVATNLGTGLK----DIHFMNAYSSDSGRAIETANLVLKYSEQSKL 87 (237)
T ss_dssp CEEEEEEEECCCBHHHHTTBCCSSCCCCBCHHHHHHHHHHHHHTT----TSCEEEEEECSCHHHHHHHHHHHHHTTCTTS
T ss_pred CceEEEEEeCCcccccccccccCCCCCCcCHHHHHHHHHHHHHhc----CCCCCEEEECCcHHHHHHHHHHHHhcccCCC
Confidence 45899999999999999999888 99999999999999997775 56899999999999999999992 47
Q ss_pred CccccccccccccCcCCCCCHHHHHHhChHH----------------HHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 005233 630 PKIQWRALDEINAGVCDGMTYEEIKKNMPEE----------------YEARKKDKLRYRYPRGESYLDVIQRLEPVIIEL 693 (707)
Q Consensus 630 ~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~----------------~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL 693 (707)
++..++.|+|+++|.|+|++.+++.+.+|.. +..|.... ..+|+|||+.++.+|+..++.+|
T Consensus 88 ~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gEs~~~~~~R~~~~l~~l 165 (237)
T 3r7a_A 88 KLEQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEELLKFSIQEVIDLIRAA--DPTKQAEDWELFSTRIKAEIDKI 165 (237)
T ss_dssp CEEECGGGCCCCCGGGTTSBHHHHHHHHHHHHTCSSGGGGGGSCHHHHHHHHHHH--CTTCCSCCHHHHHHHHHHHHHHH
T ss_pred CeeeCCCCcccCcchhcCCCHHHHHHHhhhhcCCCCHHHHHHhhhhhhhHHHhhc--CCCCCCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998775432 22333221 25689999999999999999999
Q ss_pred Hc-----CCCcEEEEecCC
Q 005233 694 ER-----QRAPVVVISHQC 707 (707)
Q Consensus 694 ~~-----~~~~ILVVSHgg 707 (707)
.+ .+++|||||||+
T Consensus 166 ~~~~~~~~~~~vlvVsHg~ 184 (237)
T 3r7a_A 166 SEEAAKDGGGNVLVVVHGL 184 (237)
T ss_dssp HHHHHHTTCEEEEEEECHH
T ss_pred HHHhhcCCCCeEEEEcCHH
Confidence 64 367999999985
No 21
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced glycolysis and apoptosis regulator, CAsp target, structural genomics medical relevance; HET: MSE; 1.75A {Homo sapiens}
Probab=99.93 E-value=8.4e-27 Score=243.36 Aligned_cols=134 Identities=25% Similarity=0.228 Sum_probs=119.9
Q ss_pred cccCCCceEEEeccccccccCCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHhc---
Q 005233 554 NTHLTPRPILLTRHGESRDNVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPIA--- 627 (707)
Q Consensus 554 N~~~~~~~IyLIRHGes~~N~~~~~~G---D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i~--- 627 (707)
++++..++||||||||+.+|..++++| |+|||+.|++||+.++++|. ...++.|||||++||+|||+++.
T Consensus 3 ~~~~~~~~i~LvRHGet~~n~~~~~~G~~~D~~Lt~~G~~QA~~l~~~l~----~~~~~~v~sSpl~Ra~qTA~~i~~~~ 78 (275)
T 3dcy_A 3 YFQSARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLN----NVKFTHAFSSDLMRTKQTMHGILERS 78 (275)
T ss_dssp EECCEEEEEEEEECCCBHHHHHTBCCSSSSCCCBCHHHHHHHHHHHHHTT----TCCCSEEEECSSHHHHHHHHHHHTTC
T ss_pred cccccCcEEEEEeCCCcccccCCccCCCCCCCCcCHHHHHHHHHHHHHhc----cCCCCEEEECChHHHHHHHHHHHHhc
Confidence 346777999999999999999888877 99999999999999997764 56899999999999999999992
Q ss_pred ----CCCccccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc
Q 005233 628 ----GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER 695 (707)
Q Consensus 628 ----g~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~ 695 (707)
++++.+++.|+|+++|.|+|++.+++.+.+| .|..++..+++|+|||+.++..|+..++.+|.+
T Consensus 79 ~~~~~~~v~~~~~L~E~~~G~~eg~~~~ei~~~~~----~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~ 146 (275)
T 3dcy_A 79 KFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAK----AAREECPVFTPPGGETLDQVKMRGIDFFEFLCQ 146 (275)
T ss_dssp SSCTTCCEEECGGGSCCCBGGGTTSBHHHHHHHHH----HTTCCTTTCCCTTBCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCeeECcccccCccCCcCCCCHHHHHHHHH----HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999988755 466777889999999999999999999998854
No 22
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=99.93 E-value=6.5e-27 Score=242.78 Aligned_cols=146 Identities=20% Similarity=0.218 Sum_probs=124.8
Q ss_pred CCCceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHh---cCCCCCEEEEcCcHHHHHHHHHhc----
Q 005233 557 LTPRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRL---KSERAASIWTSTLQRTILTASPIA---- 627 (707)
Q Consensus 557 ~~~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l---~~~~~d~I~TSPl~RAiQTA~~i~---- 627 (707)
+.+++||||||||+.+|..++++| |+|||+.|++||+.++++|.... ...+++.|||||++||+|||+++.
T Consensus 3 ~~~~~l~LvRHGet~~n~~~~~~G~~D~pLT~~G~~QA~~l~~~L~~~~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~ 82 (265)
T 3f3k_A 3 SLTPRCIIVRHGQTEWSKSGQYTGLTDLPLTPYGEGQMLRTGESVFRNNQFLNPDNITYIFTSPRLRARQTVDLVLKPLS 82 (265)
T ss_dssp CCCCEEEEEECCCCHHHHHTCCCSSCCCCCCHHHHHHHHHHHHHHHTC-CCSCGGGEEEEEECSSHHHHHHHHHHTTTSC
T ss_pred CCCcEEEEEECCCCccccccCccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCCCCEEEECCHHHHHHHHHHHHHhcc
Confidence 456899999999999999999888 99999999999999999987521 114789999999999999999992
Q ss_pred -----CCCccccccccccccCcCCCCCHHHHHHhChHH-------HHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc
Q 005233 628 -----GFPKIQWRALDEINAGVCDGMTYEEIKKNMPEE-------YEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER 695 (707)
Q Consensus 628 -----g~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~-------~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~ 695 (707)
+.++.+++.|+|+++|.|+|++.+++.+.+|+. |..|. ..+|+|||+.++.+|+..++.++.+
T Consensus 83 ~~~~~~~~~~~~~~L~E~~~G~~eg~~~~ei~~~~~~~~~~~~~~~~~w~-----~~~p~gEs~~~~~~R~~~~l~~l~~ 157 (265)
T 3f3k_A 83 DEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSRGLDKERPWNIWR-----DGCENGETTQQIGLRLSRAIARIQN 157 (265)
T ss_dssp HHHHHTSEEEECGGGSCCCCGGGTTCCHHHHHHHHHHTTCCSSSCCCHHH-----HCCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEcCCceeeccCccCCCcHHHHHHHhhhccccccchhhhhc-----cCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 267889999999999999999999999988742 22232 3479999999999999999999964
Q ss_pred C---------CCcEEEEecCC
Q 005233 696 Q---------RAPVVVISHQC 707 (707)
Q Consensus 696 ~---------~~~ILVVSHgg 707 (707)
. +++|||||||+
T Consensus 158 ~~~~~~~~~~~~~vliVsHg~ 178 (265)
T 3f3k_A 158 LHRKHQSEGRASDIMVFAHGH 178 (265)
T ss_dssp HHHHHHHTTCCCEEEEEECHH
T ss_pred HhhhhhccCCCCcEEEEeChH
Confidence 2 47999999985
No 23
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=99.91 E-value=5.5e-25 Score=228.69 Aligned_cols=147 Identities=22% Similarity=0.279 Sum_probs=122.3
Q ss_pred cCCCceEEEecccccccc------------CCC------------------CcCC---CCCCCHHHHHHHHHHHHHHHHH
Q 005233 556 HLTPRPILLTRHGESRDN------------VRG------------------RIGG---DTILSDAGEIYAKKLANFVEKR 602 (707)
Q Consensus 556 ~~~~~~IyLIRHGes~~N------------~~~------------------~~~G---D~pLTe~G~~QA~~Lg~~L~~~ 602 (707)
.+.+++||||||||+.+| ..+ +++| |.|||+.|++||+.+++.|+..
T Consensus 6 ~~~~~~l~lvRHGet~~n~~~~~w~~~~~n~~~~y~~~d~n~p~~~~~r~~~~~G~~~D~pLt~~G~~QA~~l~~~L~~~ 85 (273)
T 3d4i_A 6 TISRRGILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDPPLSSCGIFQARLAGEALLDS 85 (273)
T ss_dssp TSCCCEEEEEECCCBHHHHHCTTHHHHTBCTTSCBCCSSTTSCSCCCCCTTGGGGGGGSCCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCccccccccchhHHHhhhccccccccccccCCcccccccCCCcCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 455689999999999985 222 2344 9999999999999999999765
Q ss_pred hcCCCCCEEEEcCcHHHHHHHHHh---cC----CCccccccccc-cccCcCCC----CCHHHHHHhChH---HHHHHhcC
Q 005233 603 LKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVCDG----MTYEEIKKNMPE---EYEARKKD 667 (707)
Q Consensus 603 l~~~~~d~I~TSPl~RAiQTA~~i---~g----~~v~~~~~L~E-i~~G~~eG----lt~~ei~~~~P~---~~~~~~~d 667 (707)
+..++.|||||+.||+|||+++ .+ .++..+++|+| +++|.|+| ++.+++.+.+|+ .|..|..+
T Consensus 86 --~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~eg~~~~~~~~el~~~~~~~~~~~~~~~~~ 163 (273)
T 3d4i_A 86 --GVRVTAVFASPALRCVQTAKHILEELKLEKKLKIRVEPGIFEWMKWEASKATLTFLTLEELKEANFNVDLDYRPALPR 163 (273)
T ss_dssp --TCCEEEEEECSSHHHHHHHHHHHHHHTCTTTSCEEECGGGSCCGGGSCTTGGGGSCCHHHHHHTTCCBCTTCCCSSCG
T ss_pred --CCCCCEEEECchHHHHHHHHHHHHHcCcCCCccEEEChhhhhhhhccccccCCCCCCHHHHHHhCCCCCcccccccCC
Confidence 5689999999999999999999 34 67888999999 99999999 689999987763 34444332
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHcC----CCcEEEEecCC
Q 005233 668 KLRYRYPRGESYLDVIQRLEPVIIELERQ----RAPVVVISHQC 707 (707)
Q Consensus 668 ~~~~r~PgGES~~dv~~Rv~~~l~eL~~~----~~~ILVVSHgg 707 (707)
..+|+|||+.++.+|+..++.++.++ +++|||||||+
T Consensus 164 ---~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~ 204 (273)
T 3d4i_A 164 ---CSLMPAESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSS 204 (273)
T ss_dssp ---GGCCTTCCHHHHHHHHHHHHHHHHTTSTTCCSEEEEEECTT
T ss_pred ---CcCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEechH
Confidence 35789999999999999999998653 57899999996
No 24
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=99.91 E-value=9.3e-25 Score=225.98 Aligned_cols=146 Identities=23% Similarity=0.165 Sum_probs=118.3
Q ss_pred CCceEEEeccccccc----------------------------cCCCCcCC---CCCCCHHHHHHHHHHHHHHHHHhcCC
Q 005233 558 TPRPILLTRHGESRD----------------------------NVRGRIGG---DTILSDAGEIYAKKLANFVEKRLKSE 606 (707)
Q Consensus 558 ~~~~IyLIRHGes~~----------------------------N~~~~~~G---D~pLTe~G~~QA~~Lg~~L~~~l~~~ 606 (707)
++++||||||||+.+ |..++++| |.|||+.|++||+.+++.|++. ..
T Consensus 3 ~~~~l~lvRHGet~~n~~~~w~~~~~~~~~y~~~d~n~p~~~pn~~~~~~g~~~D~pLt~~G~~QA~~l~~~L~~~--~~ 80 (263)
T 3c7t_A 3 SRRWVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLTRLGWFQAQLVGEGMRMA--GV 80 (263)
T ss_dssp -CEEEEEEECCCBHHHHSSSHHHHHEETTEECCCSTTSCSCCCCCTTHHHHHHHSCCBCHHHHHHHHHHHHHHHHT--TC
T ss_pred CceEEEEEeCCccccccchhhHhhhhccCccccccccCCccccccccCcccCCCCCCcCHHHHHHHHHHHHHHHHC--CC
Confidence 568999999999998 34555554 9999999999999999999764 56
Q ss_pred CCCEEEEcCcHHHHHHHHHh---cC----CCccccccccc-cccCcC---CCCCHHHHHHhChHHHHHHhcCcCCCCCCC
Q 005233 607 RAASIWTSTLQRTILTASPI---AG----FPKIQWRALDE-INAGVC---DGMTYEEIKKNMPEEYEARKKDKLRYRYPR 675 (707)
Q Consensus 607 ~~d~I~TSPl~RAiQTA~~i---~g----~~v~~~~~L~E-i~~G~~---eGlt~~ei~~~~P~~~~~~~~d~~~~r~Pg 675 (707)
+++.|||||+.||+|||+++ .+ .++..+++|+| +++|.| +|++.+++.+.+|.. ..+....... .|+
T Consensus 81 ~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~~g~~~G~eg~~~~e~~~~~~~~-~~~~~~~~~~-~p~ 158 (263)
T 3c7t_A 81 SIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNWHMPKGIDFMTPIELCKAGLNV-DMTYKPYVEM-DAS 158 (263)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTCCTTCCEEECGGGCCCCCTTSCCCCCCCCHHHHHHTTCCB-CTTCCCSCCC-CSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHHcCcCCCCceEeccccccccccccccccccCCHHHHHHhcCCc-cccccccccC-CCC
Confidence 89999999999999999998 34 77889999999 997555 889999999877641 1111221122 389
Q ss_pred CCCHHHHHHHHHHHHHHHHc----CCCcEEEEecCC
Q 005233 676 GESYLDVIQRLEPVIIELER----QRAPVVVISHQC 707 (707)
Q Consensus 676 GES~~dv~~Rv~~~l~eL~~----~~~~ILVVSHgg 707 (707)
|||+.++.+|+..++.++.+ .+++|||||||+
T Consensus 159 gEs~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~ 194 (263)
T 3c7t_A 159 AETMDEFFKRGEVAMQAAVNDTEKDGGNVIFIGHAI 194 (263)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTTTCCEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCHH
Confidence 99999999999999999864 357999999985
No 25
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=99.90 E-value=4.9e-24 Score=220.71 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=109.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cC----CCccccccccccccCcCCC------
Q 005233 581 DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AG----FPKIQWRALDEINAGVCDG------ 647 (707)
Q Consensus 581 D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g----~~v~~~~~L~Ei~~G~~eG------ 647 (707)
|+|||+.|++||+.++++|++. ...++.|||||+.||+|||+++ .+ .++..++.|+| +|.|+|
T Consensus 55 D~pLT~~G~~QA~~l~~~L~~~--~~~~d~v~sSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E--~g~~eg~~~~~~ 130 (264)
T 3mbk_A 55 DAPITVFGCMQARLVGEALLES--NTVIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLFE--WTKWVAGSTLPA 130 (264)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHT--TCCCCEEEECSSHHHHHHHHHHHHHHTCTTTCCBEECGGGSC--CGGGSSSSSCCC
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCcCEEEECcHHHHHHHHHHHHHHhcccCCCCeeEcCChHH--HhhhccccCCCC
Confidence 8999999999999999999765 5689999999999999999998 33 47889999999 689998
Q ss_pred -CCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc----CCCcEEEEecCC
Q 005233 648 -MTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER----QRAPVVVISHQC 707 (707)
Q Consensus 648 -lt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~----~~~~ILVVSHgg 707 (707)
++.+++.+.+|..+..|..+.....+|+|||+.++.+|+..++.++.+ .+++|||||||+
T Consensus 131 ~~~~~e~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~l~~~~~~~~~~vlvVsHg~ 195 (264)
T 3mbk_A 131 WIPPSELAAANLSVDTTYRPHIPVSKLAISESYDTYINRSFQVTKEIISECKSKGNNILIVAHAS 195 (264)
T ss_dssp CCCHHHHHHTTCCBCTTCCCSSCGGGCCTTCCHHHHHHHHHHHHHHHHHHHTTSCSEEEEEECTT
T ss_pred CCCHHHHHHhCCCcchhhccccCcccCCCCCCHHHHHHHHHHHHHHHHHhccCCCCeEEEEecHH
Confidence 589999999888777777776777889999999999999999999965 357999999996
No 26
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural genomics, isomerase, structural GE consortium, SGC; 2.40A {Plasmodium falciparum}
Probab=99.84 E-value=1.8e-21 Score=195.98 Aligned_cols=130 Identities=21% Similarity=0.199 Sum_probs=81.4
Q ss_pred CCCceEEEeccccccccCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c-CCCcc
Q 005233 557 LTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPKI 632 (707)
Q Consensus 557 ~~~~~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~-g~~v~ 632 (707)
+.+++||||||||+.+|..+ -..|.|||+.|++||+.+++.|+..+...+++.|||||+.||+|||+++ . +.++.
T Consensus 19 ~~~~~i~LvRHGet~~n~~~-g~~d~pLt~~G~~QA~~l~~~L~~~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 97 (214)
T 3eoz_A 19 NTTKHIILVRHGQYERRYKD-DENSKRLTKEGCKQADITGKKLKDILNNKKVSVIYHSDMIRAKETANIISKYFPDANLI 97 (214)
T ss_dssp CCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHHTTCTTSEEE
T ss_pred CCccEEEEEeCCccccCccC-CcCCCCcCHHHHHHHHHHHHHHHHhcccCCCCEEEECCcHHHHHHHHHHHHHCCCCCee
Confidence 34589999999999999764 1129999999999999999999877666689999999999999999999 2 56788
Q ss_pred ccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC-----CCcEEEEecCC
Q 005233 633 QWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-----RAPVVVISHQC 707 (707)
Q Consensus 633 ~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~-----~~~ILVVSHgg 707 (707)
.++.|+| |+++.+. ..| ....|+|||+.++.+|+..++.++... +++||||||||
T Consensus 98 ~~~~L~E-------G~~~~~~--~~~-----------~~~~~~gEs~~~~~~R~~~~l~~l~~~~~~~~~~~vlvVsHg~ 157 (214)
T 3eoz_A 98 NDPNLNE-------GTPYLPD--PLP-----------RHSKFDAQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGN 157 (214)
T ss_dssp ECGGGCC-------CC-----------------------------------CCHHHHHHHHCSCCCSSCCEEEEEEECHH
T ss_pred eCccccC-------CCCCCCC--CCc-----------ccCCCCCccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEeCcH
Confidence 8999999 5554321 011 122478999999999999999999654 24799999985
No 27
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=99.84 E-value=7.2e-21 Score=189.29 Aligned_cols=128 Identities=23% Similarity=0.271 Sum_probs=98.4
Q ss_pred cCCCceEEEeccccccccCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---c-CCCc
Q 005233 556 HLTPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---A-GFPK 631 (707)
Q Consensus 556 ~~~~~~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~-g~~v 631 (707)
.+.+++||||||||+ |..++++.|.|||+.|++||+.+++.|+.. ..+++.|||||+.||+|||+++ . +.++
T Consensus 7 ~~~~~~i~lvRHGe~--n~~g~~~~D~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~ 82 (202)
T 3mxo_A 7 AKATRHIFLIRHSQY--HVDGSLEKDRTLTPLGREQAELTGLRLASL--GLKFNKIVHSSMTRAIETTDIISRHLPGVCK 82 (202)
T ss_dssp CSSCEEEEEEECCCB--CTTCSSGGGCCBCHHHHHHHHHHHHHHHTT--CCCCSEEEEESSHHHHHHHHHHHHTSTTCCE
T ss_pred CCCceEEEEEeCccc--cCCCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHHHHhCCCCCe
Confidence 445689999999994 666777669999999999999999988753 4689999999999999999999 3 6788
Q ss_pred cccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcC-------CCcEEEEe
Q 005233 632 IQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQ-------RAPVVVIS 704 (707)
Q Consensus 632 ~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~-------~~~ILVVS 704 (707)
..++.|+| |+++++ .+| +..| .+++|++.++.+|+..++.++.+. +++|||||
T Consensus 83 ~~~~~L~E-------g~~~~~---~~~--~~~w--------~~~~es~~~~~~R~~~~~~~~~~~~~~~~~~~~~vlvVs 142 (202)
T 3mxo_A 83 VSTDLLRE-------GAPIEP---DPP--VSHW--------KPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFIC 142 (202)
T ss_dssp EEEGGGCC-------CCC---------------------------CTHHHHHHHHHHHHHHHTTCCCTTCCSCEEEEEEE
T ss_pred eeCccccc-------CCccCC---CCc--HHhh--------ccCCcccccHHHHHHHHHHHHHHhhhhccCCCceEEEEe
Confidence 89999999 444432 111 3333 367899999999999999999753 45799999
Q ss_pred cCC
Q 005233 705 HQC 707 (707)
Q Consensus 705 Hgg 707 (707)
|||
T Consensus 143 Hg~ 145 (202)
T 3mxo_A 143 HAN 145 (202)
T ss_dssp CHH
T ss_pred CHH
Confidence 985
No 28
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=99.76 E-value=3.5e-18 Score=164.50 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=82.1
Q ss_pred ceEEEeccccccccCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCCcccccc
Q 005233 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFPKIQWRA 636 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~v~~~~~ 636 (707)
|+|||||||++.+|..+. .|.|||+.|++||++++++|... ...++.|||||+.||+|||+++ .+.++..
T Consensus 1 m~l~LvRHg~t~~n~~g~--~d~pLt~~G~~qA~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~--- 73 (161)
T 1ujc_A 1 MQVFIMRHGDAALDAASD--SVRPLTTNGCDESRLMANWLKGQ--KVEIERVLVSPFLRAEQTLEEVGDCLNLPSSA--- 73 (161)
T ss_dssp CEEEEEECCCBCSCSSSG--GGCCBCHHHHHHHHHHHHHHHHT--TCCCCEEEECSSHHHHHHHHHHHHHSCCCSCC---
T ss_pred CEEEEEeCCCcCCCCCCC--CcCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEeCchHHHHHHHHHHHHhcCCCceE---
Confidence 479999999999997531 29999999999999999999764 4689999999999999999998 3333221
Q ss_pred ccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCCcEEEEecCC
Q 005233 637 LDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELER-QRAPVVVISHQC 707 (707)
Q Consensus 637 L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~-~~~~ILVVSHgg 707 (707)
. .|++ .+|+|| + .|+..++.++.+ .+++|||||||+
T Consensus 74 -~-----~~~~------------------------l~p~ge-~----~r~~~~l~~~~~~~~~~vlvV~H~~ 110 (161)
T 1ujc_A 74 -E-----VLPE------------------------LTPCGD-V----GLVSAYLQALTNEGVASVLVISHLP 110 (161)
T ss_dssp -E-----ECGG------------------------GSTTCC-H----HHHHHHHHHHHHHTCCEEEEEECTT
T ss_pred -E-----ecCC------------------------cCCCCC-H----HHHHHHHHHHhccCCCeEEEEeCHH
Confidence 1 1211 147788 3 577777777754 567999999996
No 29
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=99.73 E-value=6e-18 Score=164.74 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=61.1
Q ss_pred CceEEEeccccccccCCCCcCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---cCCC--c
Q 005233 559 PRPILLTRHGESRDNVRGRIGG--DTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI---AGFP--K 631 (707)
Q Consensus 559 ~~~IyLIRHGes~~N~~~~~~G--D~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i---~g~~--v 631 (707)
|++|||||||++.+|..+ +| |.|||+.|++||++++++|.+. ...++.|||||+.||+|||+++ .+.+ +
T Consensus 8 M~~l~LvRHg~t~~n~~~--~g~~d~pLt~~G~~qa~~l~~~l~~~--~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 83 (173)
T 2rfl_A 8 PTRVYLLRHAKAAWAAPG--ERDFDRGLNEAGFAEAEIIADLAADR--RYRPDLILSSTAARCRQTTQAWQRAFNEGIDI 83 (173)
T ss_dssp CCEEEEEECCCBCC-------CGGGCCBCHHHHHHHHHHHHHHHHH--TCCCSEEEECSSHHHHHHHHHHHHHHC--CEE
T ss_pred ccEEEEEeCCCcCCCCCC--CCcccCCcCHHHHHHHHHHHHHHHhC--CCCCCEEEECCHHHHHHHHHHHHHhcCCCCCe
Confidence 478999999999999765 44 8999999999999999999865 5689999999999999999998 3444 4
Q ss_pred ccccccccc
Q 005233 632 IQWRALDEI 640 (707)
Q Consensus 632 ~~~~~L~Ei 640 (707)
..+++|.|.
T Consensus 84 ~~~~~l~e~ 92 (173)
T 2rfl_A 84 VYIDEMYNA 92 (173)
T ss_dssp EECGGGSSC
T ss_pred EECHhHhcC
Confidence 555666553
No 30
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=99.68 E-value=7.9e-17 Score=150.99 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=79.1
Q ss_pred CCCeEEEEEEEeecccCCCceeEEecCCCccCCCCcccccccccc----cCCeeEEEEEeCCCCCceeeeEEE---eeCC
Q 005233 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRE----SASMWELSFVVPPNHETLDFKFLL---KPKY 99 (707)
Q Consensus 27 ~~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~----~~~~W~ls~~~~~~~~~leyKf~l---~~~~ 99 (707)
-+.+.-|.|+|.+|. ..++.++|+||+|.||+|||+||++|... ..+.|.+++++|.. .++||||++ ++.+
T Consensus 5 s~~~v~V~F~v~~~~-~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~-~~~eYKyvi~~~~~~~ 82 (131)
T 2z0b_A 5 SSGPSQVAFEIRGTL-LPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRG-VSVQYRYFKGYFLEPK 82 (131)
T ss_dssp -CCCEEEEEEEECCC-CTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTT-CCEEEEEEEEEEECCC
T ss_pred CCCeEEEEEEEeeec-CCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCC-CcEEEEEEEEeecCcc
Confidence 456789999999987 88999999999999999999999999998 89999999999776 679999999 7653
Q ss_pred CC------CceEeecCC-CccccCCC
Q 005233 100 GN------GPCIVEEGP-NRLLTGGA 118 (707)
Q Consensus 100 ~~------~~~~~E~g~-NR~l~~~~ 118 (707)
+. ....||.|+ ||.|..+.
T Consensus 83 ~~~g~~~v~~~~WE~g~~NR~l~~~~ 108 (131)
T 2z0b_A 83 TIGGPCQVIVHKWETHLQPRSITPLE 108 (131)
T ss_dssp C----CEEEEEEECCSSCCEEECCCS
T ss_pred ccCCccccceeeECCCCCCcEEecCC
Confidence 23 566999999 99999774
No 31
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=99.66 E-value=9.9e-17 Score=145.24 Aligned_cols=89 Identities=19% Similarity=0.379 Sum_probs=77.1
Q ss_pred CCeEEEEEEEeecccCCCceeEEecCCCccCCCCccccccccccc----CCeeEEEEEeCCCCCceeeeEEEeeCCCCCc
Q 005233 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES----ASMWELSFVVPPNHETLDFKFLLKPKYGNGP 103 (707)
Q Consensus 28 ~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~----~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~ 103 (707)
+++.-|.|++.+| +..++.++|+||+|.||+|||+||++|+..+ .+.|.+++++|.. .++||||++++. +. .
T Consensus 4 ~~~v~V~F~v~~~-t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~-~~~eYKy~v~~~-~g-~ 79 (108)
T 1ac0_A 4 PTAVAVTFDLTAT-TTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAG-ESFEYKFIRIES-DD-S 79 (108)
T ss_dssp CCCCCEEEEEECC-CCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSS-SCEECCCEECCS-SS-C
T ss_pred CCeEEEEEEEeeE-CCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCC-CeEEEEEEEEcC-CC-C
Confidence 5678899999998 7889999999999999999999999999984 4999999999776 559999999763 33 3
Q ss_pred eEeecCCCccccCCCCC
Q 005233 104 CIVEEGPNRLLTGGALQ 120 (707)
Q Consensus 104 ~~~E~g~NR~l~~~~~~ 120 (707)
+.||+|+||.+..|...
T Consensus 80 ~~WE~g~nR~~~~p~~~ 96 (108)
T 1ac0_A 80 VEWESDPNREYTVPQAC 96 (108)
T ss_dssp CCCCCSSCCEECCCSSS
T ss_pred EEeccCCCEEEECCCCC
Confidence 45999999999877543
No 32
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.59 E-value=1.1e-15 Score=165.66 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=94.5
Q ss_pred ccccccCCCceEEEeccccccccCCCCcC-CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh---
Q 005233 551 FLVNTHLTPRPILLTRHGESRDNVRGRIG-GDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI--- 626 (707)
Q Consensus 551 ~L~N~~~~~~~IyLIRHGes~~N~~~~~~-GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i--- 626 (707)
++.+-...+++|||||||++.+|...... .|.|||+.|++||+.++++|+ ...++.|||||+.||+|||+++
T Consensus 174 ~l~~g~~~~~~l~lvRHg~~~~~~~~~~~~~d~pLt~~G~~qa~~~~~~l~----~~~~d~i~sSp~~Ra~~Ta~~~~~~ 249 (364)
T 3fjy_A 174 RVQEGAATAQNLLIVRHAKAESRKSWKGTDANRPITPKGAAMAFALNRELA----CFNPTRLATSPWLRCQETLQVLSWQ 249 (364)
T ss_dssp HHHTTGGGCEEEEEEECCCBCCTTTCCSCSTTCCBCHHHHHHHHHHHHHHG----GGCEEEEEECSSHHHHHHHHHHHHH
T ss_pred HhccCCCcceeEEEEeccccccccccCCCcCcCCCCHHHHHHHHHHHHHhc----cCCCCEEEEcChHHHHHHHHHHHHh
Confidence 33334556789999999999977542111 188999999999999998886 3479999999999999999998
Q ss_pred cCCCccccccccccccCcCCCCCHHHHHHhChHHHHHHhcCcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecC
Q 005233 627 AGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVISHQ 706 (707)
Q Consensus 627 ~g~~v~~~~~L~Ei~~G~~eGlt~~ei~~~~P~~~~~~~~d~~~~r~PgGES~~dv~~Rv~~~l~eL~~~~~~ILVVSHg 706 (707)
.+.++..++.|+|..+ +++..++..|+..++.++...+++||||+||
T Consensus 250 ~~~~~~~~~~l~e~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~vlvV~H~ 296 (364)
T 3fjy_A 250 TERPMEHINTLTEDAF---------------------------------AEHPAVSWLAFREQITQTLNSRETTAICMHR 296 (364)
T ss_dssp HTCCEEECGGGSHHHH---------------------------------HHCHHHHHHHHHHHHHHHHHHTCEEEEEECH
T ss_pred cCCCeEECcccCcccc---------------------------------ccCHHHHHHHHHHHHHHHhcCCCeEEEEeCc
Confidence 5778888888888533 1345566777888888877778899999998
Q ss_pred C
Q 005233 707 C 707 (707)
Q Consensus 707 g 707 (707)
+
T Consensus 297 ~ 297 (364)
T 3fjy_A 297 P 297 (364)
T ss_dssp H
T ss_pred H
Confidence 4
No 33
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=99.54 E-value=1.9e-14 Score=140.58 Aligned_cols=65 Identities=26% Similarity=0.248 Sum_probs=55.7
Q ss_pred ceEEEeccccccccCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh
Q 005233 560 RPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (707)
Q Consensus 560 ~~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i 626 (707)
|+|||||||++.+|..+....|.|||+.|++||++++++|++. ...++.|||||+.||+|||+++
T Consensus 1 M~l~LvRHg~a~~~~~~~~d~d~pLt~~G~~qA~~~~~~L~~~--~~~~~~i~sSp~~Ra~qTa~~l 65 (172)
T 3f2i_A 1 MELYLIRHGIAEAQKTGIKDEERELTQEGKQKTEKVAYRLVKL--GRQFDLIVTSPLIRARQTAEIL 65 (172)
T ss_dssp CEEEEEECCCBCCC---CCGGGCCBCHHHHHHHHHHHHHHHHT--TCCCSEEEECSSHHHHHHHHHH
T ss_pred CEEEEEcCCCcCccccCCCCCCCCcCHHHHHHHHHHHHHHHhc--CCCCCEEEECChHHHHHHHHHH
Confidence 5799999999999865432238999999999999999999865 5689999999999999999999
No 34
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=99.51 E-value=2.2e-14 Score=167.67 Aligned_cols=94 Identities=27% Similarity=0.336 Sum_probs=84.6
Q ss_pred CCCeEEEEEEEeecccCCCceeEEecCCCccCCCCccccc-cccc---ccCCeeEEEEEeCCCCCceeeeEEEeeCCCCC
Q 005233 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (707)
Q Consensus 27 ~~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal-~m~~---~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~ 102 (707)
.+++.-|.|+|.+|++..++.++|+||+|.||+|+|+||+ +|+. .+.+.|.+++++|.. .+|||||++++.+
T Consensus 580 ~~~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~-~~~eyK~~~~~~~--- 655 (683)
T 3bmv_A 580 TGNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAG-TTIQFKFIKKNGN--- 655 (683)
T ss_dssp SSSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETT-CEEEEEEEEESSS---
T ss_pred CCCeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCC-CcEEEEEEEEcCC---
Confidence 4679999999999999999999999999999999999999 9999 889999999999765 7799999999853
Q ss_pred ceEeecCCCccccCCCCCCCce
Q 005233 103 PCIVEEGPNRLLTGGALQGDSR 124 (707)
Q Consensus 103 ~~~~E~g~NR~l~~~~~~~~~~ 124 (707)
.+.||+|+||.++.|.....++
T Consensus 656 ~~~WE~g~Nr~~~~~~~~~~~~ 677 (683)
T 3bmv_A 656 TITWEGGSNHTYTVPSSSTGTV 677 (683)
T ss_dssp CCEECCSSCEEEECCSSSCEEE
T ss_pred ceEecCCCCeeEECCCCCceEE
Confidence 6889999999999887654333
No 35
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=99.51 E-value=2.6e-14 Score=167.08 Aligned_cols=95 Identities=27% Similarity=0.364 Sum_probs=85.3
Q ss_pred CCCeEEEEEEEeecccCCCceeEEecCCCccCCCCccccc-cccc---ccCCeeEEEEEeCCCCCceeeeEEEeeCCCCC
Q 005233 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (707)
Q Consensus 27 ~~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal-~m~~---~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~ 102 (707)
.+++.-|.|+|.+|++..++.++|+||+|.||+|||+||+ +|.. .+.+.|.+++++|.. .+|||||++++.+
T Consensus 583 ~~~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~-~~~eyK~~~~~~~--- 658 (686)
T 1d3c_A 583 SGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAG-KTIEFKFLKKQGS--- 658 (686)
T ss_dssp SSSEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETT-CEEEEEEEEEETT---
T ss_pred CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCC-CcEEEEEEEEcCC---
Confidence 3579999999999999999999999999999999999999 9998 899999999999766 7799999999853
Q ss_pred ceEeecCCCccccCCCCCCCceE
Q 005233 103 PCIVEEGPNRLLTGGALQGDSRS 125 (707)
Q Consensus 103 ~~~~E~g~NR~l~~~~~~~~~~~ 125 (707)
.+.||+|+||.++.|.....++.
T Consensus 659 ~~~WE~g~Nr~~~~~~~~~~~~~ 681 (686)
T 1d3c_A 659 TVTWEGGSNHTFTAPSSGTATIN 681 (686)
T ss_dssp EEEECCSSCEEEECCSSSCEEEE
T ss_pred ceEecCCCCeEEECCCCCcEEEE
Confidence 78899999999998876543333
No 36
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=99.50 E-value=2.8e-14 Score=166.67 Aligned_cols=96 Identities=27% Similarity=0.358 Sum_probs=84.9
Q ss_pred CCCeEEEEEEEeecccCCCceeEEecCCCccCCCCccccc-cccc---ccCCeeEEEEEeCCCCCceeeeEEEeeCCCCC
Q 005233 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKAL-AMGR---ESASMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (707)
Q Consensus 27 ~~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal-~m~~---~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~~ 102 (707)
.+++.-|.|+|.+|++..++.++|+||+|.||+|||+||+ +|.. .+.+.|.+++++|.. .+|||||++++.+ .
T Consensus 576 ~~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~-~~~eyK~v~~~~~--~ 652 (680)
T 1cyg_A 576 TNDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEG-KTIEFKFIKKDSQ--G 652 (680)
T ss_dssp SSCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESS-CEEEEEEEEECTT--S
T ss_pred CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCC-CcEEEEEEEEeCC--C
Confidence 3579999999999999999999999999999999999999 9999 899999999999765 7799999999843 4
Q ss_pred ceEeecCCCccccCCCCCCCceE
Q 005233 103 PCIVEEGPNRLLTGGALQGDSRS 125 (707)
Q Consensus 103 ~~~~E~g~NR~l~~~~~~~~~~~ 125 (707)
.++||+|+||.++.|.....++.
T Consensus 653 ~~~WE~g~Nr~~~~~~~~~~~~~ 675 (680)
T 1cyg_A 653 NVTWESGSNHVYTTPTNTTGKII 675 (680)
T ss_dssp CEEECCSSCEEEECCSSSCEEEE
T ss_pred CeEeCCCCCeeEECCCCCcEEEE
Confidence 57899999999998876543333
No 37
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=99.48 E-value=8.2e-14 Score=137.82 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=57.2
Q ss_pred CCceEEEeccccccccCCCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHh
Q 005233 558 TPRPILLTRHGESRDNVRGRIGGDTILSDAGEIYAKKLANFVEKRLKSERAASIWTSTLQRTILTASPI 626 (707)
Q Consensus 558 ~~~~IyLIRHGes~~N~~~~~~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~~d~I~TSPl~RAiQTA~~i 626 (707)
.+++|||||||+++|+..+ -|.|||++|++||+.++++|++. ...+|.|||||+.||+|||+.+
T Consensus 18 ~~k~L~L~RHaka~~~~~D---~dRpLt~~G~~~a~~~~~~l~~~--~~~~d~i~~Spa~Ra~qTa~~~ 81 (186)
T 4hbz_A 18 GARTLVLMRHAAAGSAVRD---HDRPLTPDGVRAATAAGQWLRGH--LPAVDVVVCSTAARTRQTLAAT 81 (186)
T ss_dssp CCEEEEEEECCCBCCCSSG---GGCCBCHHHHHHHHHHHHHHHHH--SCCCCEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEECCccCCCCCC---CCCCCCHHHHHHHHHhhhHhhhc--ccCCCccccCcchhHHHHHHhh
Confidence 4589999999999986432 28899999999999999999887 6789999999999999999987
No 38
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=99.39 E-value=7.5e-13 Score=149.78 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=83.5
Q ss_pred CCCeEEEEEEEeecccCCCceeEEecCCCccCCCCcccc-cccccccCC-eeEEEEEeCCCCCceeeeEEEeeCCCCCce
Q 005233 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKA-LAMGRESAS-MWELSFVVPPNHETLDFKFLLKPKYGNGPC 104 (707)
Q Consensus 27 ~~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~ka-l~m~~~~~~-~W~ls~~~~~~~~~leyKf~l~~~~~~~~~ 104 (707)
.+.+.-|.|++.+|+...++.+.|+||+|.||+||+.|| ++|...+.+ .|..++++|.. .+|||||++++. +..+.
T Consensus 416 t~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~~p~~W~~~v~lp~~-~~~eYKyv~~~~-~g~v~ 493 (516)
T 1vem_A 416 GVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAE-RNIEFKAFIKSK-DGTVK 493 (516)
T ss_dssp SCCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETT-CCEEEEEEEECT-TSCEE
T ss_pred ccCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCCCCCEEEEEEEECCC-CcEEEEEEEEeC-CCCee
Confidence 467899999999999999999999999999999999999 799987777 99999999876 569999999773 45565
Q ss_pred EeecCCCccccCCCCCCCceE
Q 005233 105 IVEEGPNRLLTGGALQGDSRS 125 (707)
Q Consensus 105 ~~E~g~NR~l~~~~~~~~~~~ 125 (707)
.||.|+||.+..|... ++++
T Consensus 494 ~WE~g~NR~~~~p~~~-~~~~ 513 (516)
T 1vem_A 494 SWQTIQQSWNPVPLKT-TSHT 513 (516)
T ss_dssp EECSSCEEESSCCSSC-CEEE
T ss_pred EEeCCCCEEEecCCCC-CeEE
Confidence 8999999999988765 5443
No 39
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.33 E-value=3.4e-12 Score=140.84 Aligned_cols=138 Identities=16% Similarity=0.174 Sum_probs=94.9
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
...|.+|+|+|+|||||||+|++|++.+++..++. |+++ .+....+.+..++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~-----D~~~-------------------~~~~~~~~~~~~l~--- 307 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR-----DTLG-------------------SWQRCVSSCQAALR--- 307 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCG-----GGSC-------------------SHHHHHHHHHHHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc-----chHH-------------------HHHHHHHHHHHHHh---
Confidence 45688999999999999999999999876654443 3331 12333344444443
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 005233 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRL 506 (707)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri 506 (707)
.|..||+|++|..+..|..+.++ .+.++.+.+|.+.|+ .+++.+|+..|......... .++..+
T Consensus 308 -----~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~e~l~~R~~~R~~~~~~~~~--~~~~~~------- 372 (416)
T 3zvl_A 308 -----QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT-IEQARHNNRFREMTDPSHAP--VSDMVM------- 372 (416)
T ss_dssp -----TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC-HHHHHHHHHHHHHHCTTCCC--CCHHHH-------
T ss_pred -----cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC-HHHHHHHHHhhcccCCCcCC--CCHHHH-------
Confidence 78899999999999999999888 666777878877775 66777777777552222222 244442
Q ss_pred HhhhhhccCCCCC---CeeEEeec
Q 005233 507 ANYEKVYEPVDEG---SYIKMIDM 527 (707)
Q Consensus 507 ~~y~~~yEpl~e~---~yik~in~ 527 (707)
..+.+.|||++.. .+|..+|+
T Consensus 373 ~~~~~~~e~P~~~E~fd~v~~v~~ 396 (416)
T 3zvl_A 373 FSYRKQFEPPTLAEGFLEILEIPF 396 (416)
T ss_dssp HHHHHHCCCCCGGGTCSEEEEECC
T ss_pred HHHHHhcCCCCcccCCcEEEEEec
Confidence 4555668887643 67777776
No 40
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.31 E-value=1.6e-11 Score=117.33 Aligned_cols=120 Identities=14% Similarity=0.051 Sum_probs=77.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHH-HHhhcCCceEEEechhhHHHhhCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTR-YLRWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar-~L~~~gi~tdv~~~ddyRr~~~g~~~~--~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
|.+|+|+|+|||||||+|+.|++ .++ ..+++.|.+|+...+.... ..| ....-....+.... .+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~-----~~~i~~d~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~ 69 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG-----FYNINRDDYRQSIMAHEERDEYKY----TKKKEGIVTGMQFD---TAK 69 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT-----EEEECHHHHHHHHTTSCCGGGCCC----CHHHHHHHHHHHHH---HHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC-----cEEecHHHHHHHhhCCCccchhhh----chhhhhHHHHHHHH---HHH
Confidence 57999999999999999999998 333 4567778888866542111 112 12111111111111 122
Q ss_pred HHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 428 SWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 428 ~~L~--~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
..+. ..|..||+|+++.....|+.+.++ ...++++++|.+.| +.+++.+|+..|.
T Consensus 70 ~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R~ 127 (181)
T 1ly1_A 70 SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRG 127 (181)
T ss_dssp HHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCC-CHHHHHHHHTTCG
T ss_pred HHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHhccc
Confidence 2332 468999999999999888888877 55677666666666 5677777776654
No 41
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=99.30 E-value=6e-12 Score=144.83 Aligned_cols=89 Identities=17% Similarity=0.287 Sum_probs=77.9
Q ss_pred CCCeEEEEEEEeecccCCCceeEEecCCCccCCCCcccccccccccC----CeeEEEEEeCCCCCceeeeEEEeeCCCCC
Q 005233 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESA----SMWELSFVVPPNHETLDFKFLLKPKYGNG 102 (707)
Q Consensus 27 ~~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~----~~W~ls~~~~~~~~~leyKf~l~~~~~~~ 102 (707)
.+++.-|.|+|.++ +..++.++|+||+|.||+|+|.||++|+..+. +.|..++++|.. .++||||++++. ++
T Consensus 493 ~~~~v~v~F~v~~~-t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~-~~~eYKyvv~~~-~g- 568 (599)
T 2vn4_A 493 TPTSVAVTFHELVS-TQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAG-DVVEYKYINVGQ-DG- 568 (599)
T ss_dssp CCSEEEEEEEEECC-CCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETT-CEEEEEEEEECT-TC-
T ss_pred CCCeEEEEEEEeEE-cCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCC-CcEEEEEEEECC-CC-
Confidence 45678999999997 88899999999999999999999999999985 999999999765 559999999874 33
Q ss_pred ceEeecCCCccccCCCC
Q 005233 103 PCIVEEGPNRLLTGGAL 119 (707)
Q Consensus 103 ~~~~E~g~NR~l~~~~~ 119 (707)
.+.||.|+||.+..|..
T Consensus 569 ~~~WE~g~NR~~~~p~~ 585 (599)
T 2vn4_A 569 SVTWESDPNHTYTVPAV 585 (599)
T ss_dssp CEEECCSSCEEEECCCC
T ss_pred ceEeCCCCCEEEecCcc
Confidence 35599999999987754
No 42
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.30 E-value=6.9e-11 Score=114.48 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=75.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
.|.+|+|+|+|||||||+|+.|+++|++. +++.|++|+.+.+.. . .......+.....+...+.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~-----~i~~D~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~ 72 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGL---G---WSDREWSRRVGATAIMMLYHTAAT 72 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHHH---C---CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCe-----EecHHHHHHHHHHhc---C---ccchHHHHHhhHHHHHHHHHHHHH
Confidence 57899999999999999999999998643 566788877544311 0 111222222222222222222222
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
+.+.|..||+|+++.....+..+.++ ...+.+.++|.+.|+ ++++.+|+..|..
T Consensus 73 ~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 73 ILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVERILSRIA 127 (193)
T ss_dssp HHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHHHHHHHH
T ss_pred HHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHhcC
Confidence 33367889999999433344455555 444566667777775 7778888877654
No 43
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=99.29 E-value=2.8e-13 Score=153.65 Aligned_cols=91 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred CCCeEEEEEEEeecccCCCceeEEecCCCccCCCCcccccccc-cccCCeeEEEEEeCCCCCceeeeEEEeeCCCC-Cce
Q 005233 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMG-RESASMWELSFVVPPNHETLDFKFLLKPKYGN-GPC 104 (707)
Q Consensus 27 ~~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~-~~~~~~W~ls~~~~~~~~~leyKf~l~~~~~~-~~~ 104 (707)
.+.+.-|.|||.++....++.++|+||+|.||+|+|+||++|+ ..+.+.|++++++|.. .++||||++++.+.. ..+
T Consensus 427 ~~~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~W~~~v~lp~~-~~~eyKy~~~~~~~~~~~~ 505 (527)
T 1gcy_A 427 PGALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSGYPTWKGSIALPAG-QNEEWKCLIRNEANATQVR 505 (527)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCCCCCeEEEEEEeCCC-CcEEEEEEEEeCCCCccee
Confidence 3568999999999999999999999999999999999999999 4789999999999775 569999999875443 478
Q ss_pred EeecCCCccccCCC
Q 005233 105 IVEEGPNRLLTGGA 118 (707)
Q Consensus 105 ~~E~g~NR~l~~~~ 118 (707)
.||.|+||.+..|.
T Consensus 506 ~We~g~nr~~~~~~ 519 (527)
T 1gcy_A 506 QWQGGANNSLTPSE 519 (527)
T ss_dssp --------------
T ss_pred EecCCCCeeEECCC
Confidence 89999999998664
No 44
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=99.22 E-value=1.6e-11 Score=143.58 Aligned_cols=90 Identities=23% Similarity=0.336 Sum_probs=80.1
Q ss_pred CCCeEEEEEEEeecccC-CCceeEEecCCCccCCCCc------cccc-ccccccCCeeEEEEEeCCCCCceeeeEEEeeC
Q 005233 27 AGGQFYVSLKMVNIKLK-GDLIPHVYGSVPLVGSWDS------SKAL-AMGRESASMWELSFVVPPNHETLDFKFLLKPK 98 (707)
Q Consensus 27 ~~~~~~~~~k~~~p~l~-~~~~~~i~Gs~p~lG~W~~------~kal-~m~~~~~~~W~ls~~~~~~~~~leyKf~l~~~ 98 (707)
.+.+.-|.|++.+++.. .++.+.|+||+|.||+|+| .+|+ +|...+.+.|.+++++|.. .++||||++++.
T Consensus 578 ~~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~~~~W~~~v~l~~~-~~~eyKy~~~~~ 656 (686)
T 1qho_A 578 SGTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAG-KTIQFKFFIKRA 656 (686)
T ss_dssp SSSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETT-CEEEEEEEEECT
T ss_pred CCCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCCCCcEEEEEEeCCC-CeEEEEEEEEcC
Confidence 35788999999999888 9999999999999999999 9999 9999999999999999876 569999999875
Q ss_pred CCCCceEeecCCCccccCCCC
Q 005233 99 YGNGPCIVEEGPNRLLTGGAL 119 (707)
Q Consensus 99 ~~~~~~~~E~g~NR~l~~~~~ 119 (707)
+ +. +.||.|+||.+..|..
T Consensus 657 ~-~~-~~We~~~nr~~~~~~~ 675 (686)
T 1qho_A 657 D-GT-IQWENGSNHVATTPTG 675 (686)
T ss_dssp T-SC-EEECCSSCEEEECCSS
T ss_pred C-CC-EEeCCCCCeeEECCCC
Confidence 4 33 4899999999987753
No 45
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.21 E-value=1e-10 Score=120.62 Aligned_cols=116 Identities=19% Similarity=0.163 Sum_probs=82.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEAR-NEVAALAMEDMIS 428 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~-~~vA~~~l~d~~~ 428 (707)
++.+|+|+|+|||||||+|+.|+++|...|+...+++.|.+|..+.+ |....+..++.. ...+. .
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~~~~~~~~~~i~-------~ 68 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEEFIKKSTYRLID-------S 68 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHHHHHHHHHHHHH-------H
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHHHHHHHHHHHHH-------H
Confidence 46799999999999999999999998877877766788888764432 233333322221 11122 2
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005233 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLK 482 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r 482 (707)
.+. . ..||+|+++...+.|+.+.++ ...+.+.++|.+.|+ ++++.+|+..|
T Consensus 69 ~l~-~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R 120 (260)
T 3a4m_A 69 ALK-N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIER 120 (260)
T ss_dssp HHT-T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHT
T ss_pred Hhh-C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhC
Confidence 222 4 889999999999999988887 666777777777775 66667777655
No 46
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.16 E-value=2.3e-10 Score=111.04 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=82.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
.++.+|+++|+|||||||+++.|++.|...+.+..+++.|.+|..+. ....|....+...++....++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~-------- 79 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVS---EGAGFTREERLRHLKRIAWIAR-------- 79 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTT---TTCCCCHHHHHHHHHHHHHHHH--------
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHh---hccCCChhhHHHHHHHHHHHHH--------
Confidence 35789999999999999999999999998888888888888865332 1222322112222222222222
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005233 429 WMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~ 480 (707)
.+.+.|.+||+|.++.....|+.++++ ...+.+.++|.+.|+ ++++.+|+.
T Consensus 80 ~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~-~e~~~~R~~ 131 (186)
T 2yvu_A 80 LLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKAS-LEEVIRRDP 131 (186)
T ss_dssp HHHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCH
T ss_pred HHHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHhhh
Confidence 233478999999999888888888887 555556666666775 566666654
No 47
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.16 E-value=2.3e-10 Score=119.27 Aligned_cols=121 Identities=14% Similarity=0.069 Sum_probs=79.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--ADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~--~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
|.+|+|+|+|||||||+|+.|++.+ ....+++.|++|+...+.... ..|+ ...-....+. +.+.+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~~~~~~~~g~~~~~~----~~~~~~~~~~---~~~~~~~ 70 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYT----KKKEGIVTGM---QFDTAKS 70 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCCC---CC----HHHHHHHHHH---HHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHHHhccCCcccccccc----hhhhhHHHHH---HHHHHHH
Confidence 5789999999999999999999863 124567888888866532111 0121 1111111111 1122223
Q ss_pred HHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 429 WMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 429 ~L~--~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
.+. ..|..||+|+++..+..|+.+.++ .+.++++.+|.+.| +.+++.+|+..|.
T Consensus 71 ~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 71 ILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRG 127 (301)
T ss_dssp HTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCC-CHHHHHHHHHHCG
T ss_pred HHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHHHHhcc
Confidence 342 468999999999999999998887 56777777777777 5777777777664
No 48
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.13 E-value=4.3e-10 Score=128.92 Aligned_cols=140 Identities=15% Similarity=0.154 Sum_probs=97.8
Q ss_pred CCCCccchhhHHhhhhcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcC-CceEEEechhhHHHhhCCCCCCCCC
Q 005233 326 SMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVNQSADFF 404 (707)
Q Consensus 326 ~~p~~~~~~a~~~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g-i~tdv~~~ddyRr~~~g~~~~~~f~ 404 (707)
..|.+......+...+....+.++++.+|+|+|+|||||||+|+.|+++|++.| ..+..++.|..|+.+ .....|.
T Consensus 371 ~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l---~~~~~f~ 447 (573)
T 1m8p_A 371 HIPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL---SSELGFT 447 (573)
T ss_dssp CCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT---CTTCCCS
T ss_pred CCCcccccccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh---ccccCCC
Confidence 444443333455556666656678899999999999999999999999999888 888889888888743 3334454
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHH
Q 005233 405 RADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERN 478 (707)
Q Consensus 405 ~~~~e~~~~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~r 478 (707)
..++.+.++.+.++++..+ +.|.+||+|.+++.+..|+.++++ .+.+ .++.|.+.|+ .+++.+|
T Consensus 448 ~~er~~~i~ri~~v~~~~~--------~~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~-~ev~~~R 512 (573)
T 1m8p_A 448 REDRHTNIQRIAFVATELT--------RAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATP-LEHCEQS 512 (573)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HTTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCC-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH--------hCCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCC-HHHHHHH
Confidence 4334444554444555433 379999999999999999999888 4434 3444555564 5666665
No 49
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.12 E-value=1.3e-09 Score=114.46 Aligned_cols=153 Identities=11% Similarity=0.079 Sum_probs=89.8
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQ-SADFFRADNPEGMEARNEVAALAMEDM 426 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~-~~~f~~~~~e~~~~~~~~vA~~~l~d~ 426 (707)
...|.+|+|+|.|||||||+|+.|++.+. .....++.|.+|....+... ... +.+.....+ ..........+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~~~~~~~~~~~~-~~~~a~~~~---~~~~~~~~~~~ 102 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQQHPNFDELVKL-YEKDVVKHV---TPYSNRMTEAI 102 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHTTSTTHHHHHHH-HGGGCHHHH---HHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHHhchhhHHHHHH-ccchhhhhh---hHHHHHHHHHH
Confidence 34689999999999999999999998863 13456777788753321000 000 111111111 11111111112
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHH----HHHHHHhhhcCCCCCCCCChHHHHHH
Q 005233 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDII----ERNIRLKIQQSPDYAEEPDFEAGLQD 501 (707)
Q Consensus 427 ~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i----~~rI~~r~~~~pd~s~~~d~e~a~~d 501 (707)
+..+.+.|..||+|+++.....+..+++. .+.|+.+.++.+.|+ +++. .+|+..|.......... .+++..+.
T Consensus 103 v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p-~~~~~l~~~~Rl~~R~~~g~l~~R~-~~~e~~~~ 180 (287)
T 1gvn_B 103 ISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP-KINSYLGTIERYETMYADDPMTARA-TPKQAHDI 180 (287)
T ss_dssp HHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCTTTCCC-CCHHHHHH
T ss_pred HHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHHHHHHHHHHHhCCCCCCC-CCHHHHHH
Confidence 22223368899999999998877777766 677888766777775 5655 77777665433323334 44455555
Q ss_pred HHHHHHhh
Q 005233 502 FKNRLANY 509 (707)
Q Consensus 502 f~~Ri~~y 509 (707)
..+|+..-
T Consensus 181 i~~rl~~a 188 (287)
T 1gvn_B 181 VVKNLPTN 188 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666543
No 50
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.05 E-value=1.3e-09 Score=107.31 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=78.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
++.+|+++|+|||||||+++.|++.|...|.-+..++.+++++.. .....|..+.....+.....++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------- 92 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL---NRDLSFKAEDRAENIRRVGEVAKL-------- 92 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT---TTTCCSSHHHHHHHHHHHHHHHHH--------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh---hcccCcChHHHHHHHHHHHHHHHH--------
Confidence 578999999999999999999999998666655678888776522 222233322222223333333333
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHH
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI 479 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI 479 (707)
+...|..+|++..+..++.|+.++++.. +..++.|.+.|+ .+++.+|+
T Consensus 93 ~~~~~~~vi~~~~~~~~~~r~~~~~~~~-~~~~~~v~L~a~-~e~~~~R~ 140 (200)
T 3uie_A 93 FADAGIICIASLISPYRTDRDACRSLLP-EGDFVEVFMDVP-LSVCEARD 140 (200)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHHTSC-TTSEEEEEECCC-HHHHHHHC
T ss_pred HHhCCceEEEecCCchHHHHHHHHHhcC-CCCEEEEEEeCC-HHHHHHhc
Confidence 3347899999999999999999988733 334545555665 56666664
No 51
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.04 E-value=1.4e-09 Score=104.12 Aligned_cols=124 Identities=16% Similarity=0.082 Sum_probs=72.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC--C--CCC---CCCCHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS--A--DFF---RADNPEGMEARNEVAALAM 423 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~--~--~f~---~~~~e~~~~~~~~vA~~~l 423 (707)
+.+|+++|+|||||||+|+.|++.|+. ....++.|++++.+.+.... . .|. .......++.........+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHH
Confidence 468999999999999999999999763 33345677777644331110 0 111 1111223332222211111
Q ss_pred HHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 424 EDMISWMHEGGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 424 ~d~~~~L~~~G~vVIlDAtn~~-~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
. -+.+.|..||+|+++.. ...|+.+++... +..++++.+.|+ .+++.+|+..|.
T Consensus 80 ~----~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~~~-~e~l~~R~~~r~ 134 (178)
T 1qhx_A 80 V----AMARAGARIIIDDVFLGGAAAQERWRSFVG-DLDVLWVGVRCD-GAVAEGRETARG 134 (178)
T ss_dssp H----HHHHTTCEEEEEECCTTTHHHHHHHHHHHT-TCCEEEEEEECC-HHHHHHHHHHTS
T ss_pred H----HHHhcCCeEEEEeccccChHHHHHHHHHhc-CCcEEEEEEECC-HHHHHHHHHhhC
Confidence 1 12336888999998863 455666666532 234556666674 778888887663
No 52
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.03 E-value=6.4e-10 Score=126.84 Aligned_cols=144 Identities=20% Similarity=0.208 Sum_probs=99.0
Q ss_pred ccCCCCCccchhhHHhhhhcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCC
Q 005233 323 TKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSAD 402 (707)
Q Consensus 323 ~~~~~p~~~~~~a~~~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~ 402 (707)
.....|++......+.+......+..+.+.+|+++|+|||||||+|+.|++.|+..|.++.+++.|..|+.+. ....
T Consensus 344 ~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~---~~~~ 420 (546)
T 2gks_A 344 QGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLS---RGLG 420 (546)
T ss_dssp TTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTC---TTCC
T ss_pred CCCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhc---cccc
Confidence 4456677766666777777777666677899999999999999999999999999898888999988887543 2233
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005233 403 FFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (707)
Q Consensus 403 f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~ 480 (707)
|...++...++.+.+++.. +.+.|..||+|++++.+..|+.++++ .+.+ +++|.+.|+ .+++.+|+.
T Consensus 421 f~~~er~~~l~~i~~~~~~--------~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d--~~vV~L~~~-~e~~~~Rl~ 488 (546)
T 2gks_A 421 FSKEDRITNILRVGFVASE--------IVKHNGVVICALVSPYRSARNQVRNMMEEGK--FIEVFVDAP-VEVCEERDV 488 (546)
T ss_dssp SSHHHHHHHHHHHHHHHHH--------HHHTTCEEEEECCCCCHHHHHHHHTTSCTTC--EEEEEEECC-GGGHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHH--------HHhCCCEEEEEcCCCCHHHHHHHHHHhhcCC--EEEEEEeCC-HHHHHHHhh
Confidence 3322222222222222222 33478999999999999888888877 3333 344444564 566666653
No 53
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.03 E-value=1.2e-09 Score=108.64 Aligned_cols=117 Identities=23% Similarity=0.227 Sum_probs=79.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
.+.+|+++|+|||||||+|+.|++.|. ..|+....++.+.+|..+. ....|+...+...++.+.+++..+++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~---~~~~~~~~~r~~~~~~~~~~~~~~l~---- 96 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLN---KDLGFSEADRNENIRRIAEVAKLFAD---- 96 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTT---TTCCSSHHHHHHHHHHHHHHHHHHHH----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhc---cccCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 467999999999999999999999998 7788888888877765331 22234333333444433333333333
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHc-------CCceEEEEEEEeCCHHHHHHH
Q 005233 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAE-------GNCKIIFLETICNDRDIIERN 478 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~~l~~-------~~~~vifIE~~c~d~e~i~~r 478 (707)
.|..||+|.++.....|+.+..+.. .+.+.++|.+.|+ ++++.+|
T Consensus 97 ----~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~-~e~~~~R 148 (211)
T 1m7g_A 97 ----SNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAEQR 148 (211)
T ss_dssp ----TTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHHTS
T ss_pred ----CCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCC-HHHHHHh
Confidence 6899999977666677888888732 2345666666775 5555555
No 54
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.01 E-value=1.5e-09 Score=125.13 Aligned_cols=121 Identities=22% Similarity=0.242 Sum_probs=87.6
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMI 427 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~ 427 (707)
..++.+|+|+|+|||||||+|+.|+++|...|+....++.+..|. +......|...++++.++.+.++++.+++
T Consensus 49 ~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~---~L~~~~~fs~~dree~~r~i~eva~~~l~--- 122 (630)
T 1x6v_B 49 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ---GLNKNLGFSPEDREENVRRIAEVAKLFAD--- 122 (630)
T ss_dssp SCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT---TTTTTCCSSHHHHHHHHHHHHHHHHHHHH---
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh---ccCccccCChhhhHHHHHHHHHHHHHHHh---
Confidence 347899999999999999999999999977788877777766654 22223334334455566655555554333
Q ss_pred HHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005233 428 SWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (707)
Q Consensus 428 ~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~ 480 (707)
.|.+||.|.+++.+..|+.++++ .+.+.+++.|.+.|+ .+++.+|+.
T Consensus 123 -----~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap-~Evl~~Rl~ 170 (630)
T 1x6v_B 123 -----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDV 170 (630)
T ss_dssp -----TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECC-HHHHHHHCT
T ss_pred -----CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECC-HHHHHHHhc
Confidence 79999999888887788888888 556666667777775 666777754
No 55
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.00 E-value=1.3e-09 Score=111.78 Aligned_cols=126 Identities=12% Similarity=0.115 Sum_probs=77.8
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhC---CCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHG---VNQSADFFRADNPEGMEARNEVAALAME 424 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g---~~~~~~f~~~~~e~~~~~~~~vA~~~l~ 424 (707)
...|.+|+|+|+|||||||+|+.|++.++ ....+++.|.+|+.... .....+. ........ .+.....
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~~~~~~~i~~~~g~---~~~~~~~~---~~~~~~~ 99 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQHPHYLELQQEYGK---DSVEYTKD---FAGKMVE 99 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTTSTTHHHHHTTCSS---TTHHHHHH---HHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHhchhHHHHHHHcCc---hHHHHhhH---HHHHHHH
Confidence 45688999999999999999999999865 24456788888763211 0011111 11111110 0111112
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 425 d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
.+...+.+.|..+|+|+++.....+..+..+ .+.|+.+.++.+.| +.+++.+|+..|.
T Consensus 100 ~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~-~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 100 SLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIAT-KPELSYLSTLIRY 158 (253)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHHH
Confidence 2222333467788999999887766666665 67788765555555 6777777877664
No 56
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.96 E-value=4.9e-09 Score=103.03 Aligned_cols=114 Identities=10% Similarity=0.138 Sum_probs=68.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh--hCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK--HGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~--~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
+.+|+|+|.|||||||+|+.|++.+++. +++.|+++... ....... .+. ....... ++.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~-----~i~~d~~~~~~~~~~~~~g~-~~~---~~~~~~~-------~~~l~~ 81 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYP-----FIEGDALHPPENIRKMSEGI-PLT---DDDRWPW-------LAAIGE 81 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCC-----EEEGGGGCCHHHHHHHHHTC-CCC---HHHHHHH-------HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCE-----EEeCCcCcchhhHHHHhcCC-CCC---chhhHHH-------HHHHHH
Confidence 5689999999999999999999998654 45555542110 0000001 111 1111111 111111
Q ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 429 WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
.+ ..|..+|+|+++..+..|+.+..+...... +|.+.| +.+++.+|+..|..
T Consensus 82 ~~-~~~~~vivd~~~~~~~~~~~l~~~~~~~~~--vi~l~~-~~e~~~~Rl~~R~~ 133 (202)
T 3t61_A 82 RL-ASREPVVVSCSALKRSYRDKLRESAPGGLA--FVFLHG-SESVLAERMHHRTG 133 (202)
T ss_dssp HH-TSSSCCEEECCCCSHHHHHHHHHTSTTCCE--EEEEEC-CHHHHHHHHHHHHS
T ss_pred HH-hcCCCEEEECCCCCHHHHHHHHHhcCCCeE--EEEEeC-CHHHHHHHHHHhhc
Confidence 22 368889999999998888888776432233 444456 47788888877753
No 57
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.92 E-value=2.6e-08 Score=96.75 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=87.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCC-C---CCCCC---CCCHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQ-S---ADFFR---ADNPEGMEARNEVAAL 421 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~-~---~~f~~---~~~e~~~~~~~~vA~~ 421 (707)
.+.+|+++|.|||||||+|+.|+++|++. +++.|++ |+....... . ..++. ..... ....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~ 78 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFT-----HLSTGELLREELASESERSKLIRDIMERGDLVPSG-------IVLE 78 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHH-------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHH-------HHHH
Confidence 35689999999999999999999998743 4666665 332210000 0 00000 00111 1111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH-cCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 005233 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMA-EGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (707)
Q Consensus 422 ~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~-~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~ 500 (707)
.+.+.+......|..||+|+.....+.+..+.... ..+ .++||+ | +++++.+|+..|... . . ..+...+
T Consensus 79 ~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~-~~i~l~--~-~~~~~~~R~~~R~~~----~-~-~~~~~~~ 148 (199)
T 2bwj_A 79 LLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQ-LVICMD--C-SADTMTNRLLQMSRS----S-L-PVDDTTK 148 (199)
T ss_dssp HHHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCS-EEEEEE--C-CHHHHHHHHHHTCCC----C-S-CHHHHHH
T ss_pred HHHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCC-EEEEEE--C-CHHHHHHHHHcCCCC----C-C-CCCCCHH
Confidence 12222212223578899999988887777665432 222 345554 5 577788888766321 1 1 3455567
Q ss_pred HHHHHHHhhhhhccCCCC----CCeeEEeec
Q 005233 501 DFKNRLANYEKVYEPVDE----GSYIKMIDM 527 (707)
Q Consensus 501 df~~Ri~~y~~~yEpl~e----~~yik~in~ 527 (707)
.+.+|+..|....+|+.+ ..++..||.
T Consensus 149 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~ 179 (199)
T 2bwj_A 149 TIAKRLEAYYRASIPVIAYYETKTQLHKINA 179 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 788888777666655321 134455554
No 58
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.92 E-value=1.3e-09 Score=104.75 Aligned_cols=118 Identities=20% Similarity=0.119 Sum_probs=65.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec----hhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV----GKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMED 425 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~----ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d 425 (707)
++.+|+|+|+|||||||+|+.|+++|+...+ ++. +.+++.. . .....|.. . +...+...+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i----~d~~~~g~~i~~~~-~-~g~~~~~~-~-~~~~~~~~~~i~~---- 71 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV----FEPEEMGQALRKLT-P-GFSGDPQE-H-PMWIPLMLDALQY---- 71 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE----CCTHHHHHHHHHTS-T-TCCSCGGG-S-TTHHHHHHHHHHH----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE----EchhhhHHHHHHhC-c-cccchhhh-h-HHHHHHHHHHHHH----
Confidence 4679999999999999999999999775422 132 2233322 1 11122211 1 1111111122222
Q ss_pred HHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 426 MISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 426 ~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
.+...|..||+|+++...+.++.+.+. .+.++.+.+|.+.| +++++.+|+..|.
T Consensus 72 ---~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~-~~e~~~~R~~~R~ 126 (183)
T 2vli_A 72 ---ASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIA-PLNVVLERLRRDG 126 (183)
T ss_dssp ---HHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEEC-CHHHHHHHHHTC-
T ss_pred ---HHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeC-CHHHHHHHHHhcc
Confidence 233458889999999988777666655 55555555555666 4777888887653
No 59
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.90 E-value=1e-08 Score=99.42 Aligned_cols=157 Identities=14% Similarity=0.204 Sum_probs=84.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCC-----CCCC---CCCHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA-----DFFR---ADNPEGMEARNEVAAL 421 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~-----~f~~---~~~e~~~~~~~~vA~~ 421 (707)
++.+|+++|.|||||||+|+.|++++++. +++.|++-+.....+... .++. .... +....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~-------~~~~~ 75 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYT-----HLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL-------ETVLD 75 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCH-------HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCH-------HHHHH
Confidence 45799999999999999999999997654 455555433211000000 0000 0001 01111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 005233 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQD 501 (707)
Q Consensus 422 ~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~d 501 (707)
.+.+.+.-....|..+|+|+.....+.++.+.........++|+ .| +++++.+|+..|....+ ..+...+.
T Consensus 76 ~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l--~~-~~e~~~~R~~~R~~~~~------~~~~~~~~ 146 (196)
T 2c95_A 76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYV--DA-GPETMTQRLLKRGETSG------RVDDNEET 146 (196)
T ss_dssp HHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEE--EC-CHHHHHHHHHHHHTSSS------CGGGSHHH
T ss_pred HHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEE--EC-CHHHHHHHHHccCCcCC------CCCCCHHH
Confidence 22222222233578899999777766666665543222234554 45 57778888877643222 12233455
Q ss_pred HHHHHHhhhhhccCCC----CCCeeEEeec
Q 005233 502 FKNRLANYEKVYEPVD----EGSYIKMIDM 527 (707)
Q Consensus 502 f~~Ri~~y~~~yEpl~----e~~yik~in~ 527 (707)
+.+|+..|.+..+|+- ...++..||.
T Consensus 147 ~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~ 176 (196)
T 2c95_A 147 IKKRLETYYKATEPVIAFYEKRGIVRKVNA 176 (196)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEC
Confidence 6677776665555431 1245555664
No 60
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.89 E-value=2.5e-08 Score=96.08 Aligned_cols=148 Identities=15% Similarity=0.227 Sum_probs=78.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCC------CCCC---CCCHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSA------DFFR---ADNPEGMEARNEVAA 420 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~------~f~~---~~~e~~~~~~~~vA~ 420 (707)
+|.+|+++|.|||||||+|+.|++.+++. +++.|++-+......... .+.. ....+ ....+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~l~ 73 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYT-----HLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE---ITISLLK 73 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHH---HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHH---HHHHHHH
Confidence 47899999999999999999999987643 466666533222111000 0000 00111 1111111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCc-eEEEEEEEeCCHHHHHHHHHHhhh--cCCCCCCCCChHH
Q 005233 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQ--QSPDYAEEPDFEA 497 (707)
Q Consensus 421 ~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~-~vifIE~~c~d~e~i~~rI~~r~~--~~pd~s~~~d~e~ 497 (707)
..+...+..+ ..+..+|+|+.....+.++.+........ .-++|.+.| +++++.+|+..|.. .+++ . .
T Consensus 74 ~~~~~~~~~~-~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~r~~---~-~--- 144 (196)
T 1tev_A 74 REMDQTMAAN-AQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC-NNEICIERCLERGKSSGRSD---D-N--- 144 (196)
T ss_dssp HHHHHHHHHC-TTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHHHHHHHTSSCCS---C-C---
T ss_pred HHHHhhhccc-cCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEEC-CHHHHHHHHHcccccCCCCC---C-C---
Confidence 1222222111 24778999999999887776665522222 223444556 46777777766643 1222 1 1
Q ss_pred HHHHHHHHHHhhhhhccC
Q 005233 498 GLQDFKNRLANYEKVYEP 515 (707)
Q Consensus 498 a~~df~~Ri~~y~~~yEp 515 (707)
.+.+.+|+..|.+..+|
T Consensus 145 -~~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 145 -RESLEKRIQTYLQSTKP 161 (196)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhHHH
Confidence 23345566666555444
No 61
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=3.1e-09 Score=104.57 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=71.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
..+|+++|.|||||||+|+.|++.|++. .++.|++.....+... ..++...++..++..+. +++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~g~~i-~~~~~~~~~~~~~~~e~-------~~l~~l 91 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERFHKTV-GELFTERGEAGFRELER-------NMLHEV 91 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCH-HHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHhCCcH-HHHHHhcChHHHHHHHH-------HHHHHH
Confidence 4589999999999999999999998654 4666776554433211 11222222222322221 122223
Q ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 005233 431 HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (707)
Q Consensus 431 ~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a 498 (707)
.. +..+|++........++.+..+.+. ..++|+. | +.+++.+|+..+...+|...+. +.+++
T Consensus 92 ~~-~~~~vi~~ggg~~~~~~~~~~l~~~-~~vi~L~--~-~~e~l~~Rl~~~~~~Rp~~~~~-~~~~~ 153 (199)
T 3vaa_A 92 AE-FENVVISTGGGAPCFYDNMEFMNRT-GKTVFLN--V-HPDVLFRRLRIAKQQRPILQGK-EDDEL 153 (199)
T ss_dssp TT-CSSEEEECCTTGGGSTTHHHHHHHH-SEEEEEE--C-CHHHHHHHHHHTGGGCGGGTTC-CHHHH
T ss_pred hh-cCCcEEECCCcEEccHHHHHHHHcC-CEEEEEE--C-CHHHHHHHHhcCCCCCCCcCCC-ChhhH
Confidence 33 3445556555444333333333332 2355554 4 5788899998333446766665 56443
No 62
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.86 E-value=2.7e-08 Score=95.71 Aligned_cols=148 Identities=14% Similarity=0.243 Sum_probs=77.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCC----CCCCCCCHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSA----DFFRADNPEGMEARNEVAALAME 424 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~----~f~~~~~e~~~~~~~~vA~~~l~ 424 (707)
.+.+|+++|.|||||||+|+.|++++++. +++.|++ |+......... .++..... .. .++....+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~-~~---~~~~~~~l~ 75 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWV-----HLSAGDLLRQEQQSGSKDGEMIATMIKNGEI-VP---SIVTVKLLK 75 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCTTHHHHHHHHHTTCC-CC---HHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCC-CC---HHHHHHHHH
Confidence 35799999999999999999999987754 4566554 33221110000 00000000 00 011111111
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCc-eEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 005233 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNC-KIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK 503 (707)
Q Consensus 425 d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~-~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~ 503 (707)
+.+ ....|..+|+|+.....+.+..+......+. .-+.|.+.| +++++.+|+..|...... .+...+.+.
T Consensus 76 ~~i--~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~-~~e~~~~R~~~R~~~~~r------~~~~~~~~~ 146 (194)
T 1qf9_A 76 NAI--DANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDC-PEEVMTQRLLKRGESSGR------SDDNIESIK 146 (194)
T ss_dssp HHH--HTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHHHHHHTTSCC------TTCSHHHHH
T ss_pred HHH--HhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEEC-CHHHHHHHHHhccccCCC------CCCCHHHHH
Confidence 111 1125788999998888877777766533211 122344455 577788888776431111 112234566
Q ss_pred HHHHhhhhhccC
Q 005233 504 NRLANYEKVYEP 515 (707)
Q Consensus 504 ~Ri~~y~~~yEp 515 (707)
+|+..|.+..+|
T Consensus 147 ~ri~~~~~~~~~ 158 (194)
T 1qf9_A 147 KRFNTFNVQTKL 158 (194)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHHhHHH
Confidence 676666544333
No 63
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.86 E-value=1.8e-08 Score=94.78 Aligned_cols=119 Identities=12% Similarity=0.093 Sum_probs=66.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHH-HHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEA-RNEVAALAMED-MISW 429 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~-~~~vA~~~l~d-~~~~ 429 (707)
++|+++|.|||||||+|+.| +.+++. +++.|++-+....... ............ ....-...+.+ +...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~-----~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK-----VIVMSDVVRKRYSIEA---KPGERLMDFAKRLREIYGDGVVARLCVEE 72 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE-----EEEHHHHHHHHHHHHC------CCHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc-----EEEHhHHHHHHHHhcC---CChhHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 58999999999999999999 765543 4555555332221111 000111111111 11100011111 1222
Q ss_pred H-hcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 430 M-HEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 430 L-~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
+ ...+..+|+|+. .....++.+.+.......++|+ .| +++++.+|+..|.
T Consensus 73 l~~~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l--~~-~~~~~~~R~~~R~ 123 (179)
T 3lw7_A 73 LGTSNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAV--HS-PPKIRYKRMIERL 123 (179)
T ss_dssp HCSCCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEE--EC-CHHHHHHHHHTCC
T ss_pred HHhcCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEE--EC-CHHHHHHHHHhcc
Confidence 3 245788999998 7788888888775434344444 45 5788888887764
No 64
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.86 E-value=5.6e-09 Score=102.49 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=80.8
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCC----CCCCCCCCHHHHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRADNPEGMEARNEVAALA 422 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~----~~f~~~~~e~~~~~~~~vA~~~ 422 (707)
+..|++|+|+|.|||||||+|+.|++++++. +++.|++ |+...+.... ..++.... ... .+.....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~-~~~---~~~~~~~ 87 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGELFRRNIEEGTKLGVEAKRYLDAGD-LVP---SDLTNEL 87 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHHTC-CCC---HHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHHHHHHHHcCChHHHHHHHHHHcCC-ccc---HHHHHHH
Confidence 3467899999999999999999999997654 4666655 3322110000 00000000 000 0011111
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 005233 423 MEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQ 500 (707)
Q Consensus 423 l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~-vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~ 500 (707)
+.+.+... ..|..+|+|+.......++.+..+ .+.+.. .++|.+.| +++++.+|+..|. +++ . +. +
T Consensus 88 ~~~~~~~~-~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~-~~e~~~~Rl~~R~--r~~---~-~~----e 155 (201)
T 2cdn_A 88 VDDRLNNP-DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRV-SEEVLLERLKGRG--RAD---D-TD----D 155 (201)
T ss_dssp HHHHTTSG-GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHHHC--CTT---C-SH----H
T ss_pred HHHHHhcc-cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHHcCC--CCC---C-CH----H
Confidence 11111111 135568999988887777777665 443322 24555566 4677888887763 232 1 22 3
Q ss_pred HHHHHHHhhhhhccCC
Q 005233 501 DFKNRLANYEKVYEPV 516 (707)
Q Consensus 501 df~~Ri~~y~~~yEpl 516 (707)
.+.+|+..|.+..+|+
T Consensus 156 ~~~~r~~~~~~~~~~~ 171 (201)
T 2cdn_A 156 VILNRMKVYRDETAPL 171 (201)
T ss_dssp HHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhhHHH
Confidence 5667777776655543
No 65
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.85 E-value=3.9e-09 Score=101.89 Aligned_cols=139 Identities=18% Similarity=0.243 Sum_probs=75.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWM 430 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L 430 (707)
+.+|+|+|+|||||||+|+.|++.|++. +++.|++++...+.... .++...++..++..+ ..+ +..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~g~~~~-~~~~~~g~~~~~~~~---~~~----~~~~ 71 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRTGADIA-WIFEMEGEAGFRRRE---REM----IEAL 71 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHTSCHH-HHHHHHHHHHHHHHH---HHH----HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCChh-hHHHHhCHHHHHHHH---HHH----HHHH
Confidence 4579999999999999999999998754 46667777755543211 222222223333222 111 2223
Q ss_pred hcCCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHH--HHhhhcCCCCCCCCC-hHHHHHHHHHH
Q 005233 431 HEGGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNI--RLKIQQSPDYAEEPD-FEAGLQDFKNR 505 (707)
Q Consensus 431 ~~~G~vVIlDA--tn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI--~~r~~~~pd~s~~~d-~e~a~~df~~R 505 (707)
......||..+ +......|+.+... + .++|+ .| +.+++.+|+ ..+. .+|...+. + .+...+.+.+|
T Consensus 72 ~~~~~~vi~~gg~~~~~~~~~~~l~~~---~-~vi~L--~~-~~e~l~~Rl~~~~~~-~rp~~~~~-~~~~~l~~~~~~r 142 (185)
T 3trf_A 72 CKLDNIILATGGGVVLDEKNRQQISET---G-VVIYL--TA-SIDTQLKRIGQKGEM-RRPLFIKN-NSKEKLQQLNEIR 142 (185)
T ss_dssp HHSSSCEEECCTTGGGSHHHHHHHHHH---E-EEEEE--EC-CHHHHHHHHHCCTTC-SSCCCCCH-HHHHHHHHHHHHH
T ss_pred HhcCCcEEecCCceecCHHHHHHHHhC---C-cEEEE--EC-CHHHHHHHHhhcCCC-CCCCCCCC-CHHHHHHHHHHHH
Confidence 32334444332 22344455444432 2 34454 45 578888898 4432 35766543 3 23344455566
Q ss_pred HHhhhh
Q 005233 506 LANYEK 511 (707)
Q Consensus 506 i~~y~~ 511 (707)
.+.|+.
T Consensus 143 ~~~y~~ 148 (185)
T 3trf_A 143 KPLYQA 148 (185)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 666654
No 66
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.83 E-value=3e-08 Score=95.51 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=74.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
++.+|+++|.+||||||+++.|++.|...|+....++.+..|+.+. ....|....++..++.....+. .
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------~ 72 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN---KNLGFSPEDREENVRRIAEVAK--------L 72 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT---TTCCSSHHHHHHHHHHHHHHHH--------H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHh---hccccccccHHHHHHHHHHHHH--------H
Confidence 4678999999999999999999999866676666677666654221 1122221223333333332221 1
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHH
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNI 479 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI 479 (707)
+.+.|.+++.+...+....|..+..+ ...+...+.|.+.|+ ++++.+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~ 122 (179)
T 2pez_A 73 FADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRD 122 (179)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHC
T ss_pred HHHCCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHHH
Confidence 33467788888777766666666666 445655556666775 66666665
No 67
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.82 E-value=1e-08 Score=100.91 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=68.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH------HhhCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR------LKHGVNQSADFFRADNPEGMEARNEVAALAM 423 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr------~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l 423 (707)
.+.+|+++|.|||||||+++.|+..+++ ..++.+++++ ...+. .|........+..+..++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~-----~~i~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~- 97 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL-----EFAEADAFHSPENIATMQRGI----PLTDEDRWPWLRSLAEWMDAR- 97 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC-----EEEEGGGGSCHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC-----eEEcccccccHHHHHHHhcCC----CCCCcccccHHHHHHHHHHHH-
Confidence 4679999999999999999999998743 3466666531 12111 111111111123333333322
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 424 ~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
...|..+|+|++...++.|+.+.++.. .+ .+|.+.|+ .+++.+|+..|.
T Consensus 98 -------~~~g~~viid~~~~~~~~~~~l~~~~~-~~--~vv~l~~~-~e~l~~Rl~~R~ 146 (200)
T 4eun_A 98 -------ADAGVSTIITCSALKRTYRDVLREGPP-SV--DFLHLDGP-AEVIKGRMSKRE 146 (200)
T ss_dssp -------HHTTCCEEEEECCCCHHHHHHHTTSSS-CC--EEEEEECC-HHHHHHHHTTCS
T ss_pred -------HhcCCCEEEEchhhhHHHHHHHHHhCC-ce--EEEEEeCC-HHHHHHHHHhcc
Confidence 236788899999998877777665422 23 34455564 788888886653
No 68
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.79 E-value=2.5e-08 Score=95.38 Aligned_cols=113 Identities=20% Similarity=0.301 Sum_probs=67.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH------HhhCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR------LKHGVNQSADFFRADNPEGMEARNEVAALAM 423 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr------~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l 423 (707)
.+.+|+++|.|||||||+++.|++.+++ .+++.|++++ ...+. .+........+..++.++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~-----~~i~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~- 76 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHA-----AFLDGDFLHPRRNIEKMASGE----PLNDDDRKPWLQALNDAAFAM- 76 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTC-----EEEEGGGGCCHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHH-
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCc-----EEEeCccccchHHHHHhhcCc----CCCccccccHHHHHHHHHHHH-
Confidence 4568999999999999999999988754 3466666532 11221 111111111222233322222
Q ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 424 EDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 424 ~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
...|..+|+|+++..++.|+.+++ .+..+.+|.+.| +++++.+|+..|.
T Consensus 77 -------~~~~~~~vi~~~~~~~~~~~~l~~---~~~~~~vv~l~~-~~e~~~~R~~~R~ 125 (175)
T 1knq_A 77 -------QRTNKVSLIVCSALKKHYRDLLRE---GNPNLSFIYLKG-DFDVIESRLKARK 125 (175)
T ss_dssp -------HHHCSEEEEECCCCSHHHHHHHHT---TCTTEEEEEEEC-CHHHHHHHHHTST
T ss_pred -------HhcCCcEEEEeCchHHHHHHHHHh---cCCCEEEEEEEC-CHHHHHHHHHhcc
Confidence 224778899999888776665543 333344555556 5778888887653
No 69
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.74 E-value=3.6e-07 Score=89.39 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=64.7
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCC-----CCCCC---C-CHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSA-----DFFRA---D-NPEGMEARNEV 418 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~-----~f~~~---~-~e~~~~~~~~v 418 (707)
.++.+|+++|.|||||||+|+.|++.++. .+++.|++ |+.....+... .++.. . .+.....+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~-----~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~- 86 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF-----VHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRN- 86 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC-----EEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHH-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHH-
Confidence 35679999999999999999999998654 44666654 33211111100 00000 0 0111111111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 419 AALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 419 A~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
.+...+..++..+|+|+.....+....+.........++|| .| +++++.+|+..|.
T Consensus 87 ------~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l--~~-~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 87 ------AISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFF--DC-PEDIMLERLLERG 142 (203)
T ss_dssp ------HHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEE--EC-CHHHHHHHHHHHH
T ss_pred ------HHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEE--EC-CHHHHHHHHHhcc
Confidence 11223344346888998877666665554442211224444 45 4677777776664
No 70
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.70 E-value=2.9e-08 Score=95.76 Aligned_cols=136 Identities=21% Similarity=0.208 Sum_probs=72.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMH 431 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~ 431 (707)
.+|+|+|.|||||||+|+.|++.|++. +++.|++++...+... ..++...++..++.... .+++. +.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~g~~~-~~~~~~~g~~~~~~~~~---~~~~~----~~ 69 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRTGRSI-ADIFATDGEQEFRRIEE---DVVRA----AL 69 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHSSCH-HHHHHHHCHHHHHHHHH---HHHHH----HH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHcCCCH-HHHHHHhChHHHHHHHH---HHHHH----HH
Confidence 369999999999999999999998754 5777887765544211 11222223333332221 12221 11
Q ss_pred cCCeEEEEeCCC--CCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH-HHHHh
Q 005233 432 EGGQVGIFDATN--SSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFK-NRLAN 508 (707)
Q Consensus 432 ~~G~vVIlDAtn--~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~-~Ri~~ 508 (707)
.....||.++.+ ..+..|+.+. .+ .++||. | +.+++.+|+..|. .+|.+... +.+..++.++ +|.+.
T Consensus 70 ~~~~~vi~~g~~~v~~~~~~~~l~----~~-~vV~L~--~-~~e~~~~Rl~~r~-~r~~~~~~-~~~~~i~~~~~~r~~~ 139 (184)
T 2iyv_A 70 ADHDGVLSLGGGAVTSPGVRAALA----GH-TVVYLE--I-SAAEGVRRTGGNT-VRPLLAGP-DRAEKYRALMAKRAPL 139 (184)
T ss_dssp HHCCSEEECCTTGGGSHHHHHHHT----TS-CEEEEE--C-CHHHHHHHTTCCC-CCSSTTSC-CHHHHHHHHHHHHHHH
T ss_pred hcCCeEEecCCcEEcCHHHHHHHc----CC-eEEEEe--C-CHHHHHHHHhCCC-CCCCccCC-CHHHHHHHHHHHHHHH
Confidence 123334433322 2233444332 33 355554 5 5788888886653 24555554 5555454443 45555
Q ss_pred hh
Q 005233 509 YE 510 (707)
Q Consensus 509 y~ 510 (707)
|.
T Consensus 140 ~~ 141 (184)
T 2iyv_A 140 YR 141 (184)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 71
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.70 E-value=3.1e-08 Score=98.65 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=64.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCC----CCCCC---CCCHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFR---ADNPEGMEARNEVAAL 421 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~----~~f~~---~~~e~~~~~~~~vA~~ 421 (707)
++++|+|+|.|||||||+|+.|+++|++ .+++.|++ |+...+.... ..++. .... +....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~-------~~~~~ 70 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA-----AHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD-------DIMVN 70 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCH-------HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCH-------HHHHH
Confidence 4678999999999999999999999765 34666555 3322111000 00000 0001 01111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhh
Q 005233 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 422 ~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r~ 483 (707)
.+.+.+......|..+|+|+.......++.+..+ .+.+..+ ++|.+.| +++++.+|+..|.
T Consensus 71 ~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~-~~e~~~~R~~~r~ 133 (220)
T 1aky_A 71 MIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV-DDELLVARITGRL 133 (220)
T ss_dssp HHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC-CHHHHHHHHHTEE
T ss_pred HHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHhCCC
Confidence 1111111011235578889865566666666554 3333222 3444456 4677778887664
No 72
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.68 E-value=3.8e-08 Score=94.81 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=64.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCC----CCCCCCCCHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRADNPEGMEARNEVAALAME 424 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~----~~f~~~~~e~~~~~~~~vA~~~l~ 424 (707)
++.+|+++|.|||||||+|+.|++.+++. +++.|++ |+...+.... ..++..... ... ......+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~-~~~---~~~~~~~~ 73 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFK-----KLSTGDILRDHVARGTPLGERVRPIMERGDL-VPD---DLILELIR 73 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCE-----EECHHHHHHHHHHTTCHHHHHHHHHHHTTCC-CCH---HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCe-----EecHHHHHHHHHHcCChHHHHHHHHHHcCCc-CCH---HHHHHHHH
Confidence 46789999999999999999999987654 4555544 3221110000 000000000 000 00111111
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHHhh
Q 005233 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 425 d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~-vifIE~~c~d~e~i~~rI~~r~ 483 (707)
..+. .| +|+|+.......+..+..+ .+.+.. -++|.+.|+ ++++.+|+..|.
T Consensus 74 ---~~l~-~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~R~~~R~ 127 (186)
T 3cm0_A 74 ---EELA-ER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVP-EEELVRRILRRA 127 (186)
T ss_dssp ---HHCC-SE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECC-HHHHHHHHHHHH
T ss_pred ---HHhc-CC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcc
Confidence 1122 33 8999988887777666654 444442 244555664 777788887664
No 73
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.67 E-value=1.3e-07 Score=95.55 Aligned_cols=150 Identities=13% Similarity=0.209 Sum_probs=84.3
Q ss_pred cCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHH-------
Q 005233 344 LGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN------- 416 (707)
Q Consensus 344 ~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~------- 416 (707)
...+..++.+|++.|.|||||+|.|+.|+++++... ++.||.-|..... .++.+.....
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h-----IstGdllR~~i~~---------~t~lg~~~~~~~~~G~l 87 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH-----LSSGDLLRAEVQS---------GSPKGKELKAMMERGEL 87 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE-----ECHHHHHHHHHTT---------CCHHHHHHHHHHHHTCC
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCce-----EcHHHHHHHHHHc---------CCchHHHHHHHHhcCCC
Confidence 334456788999999999999999999999976544 5556553322211 1121111111
Q ss_pred ---HHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCC
Q 005233 417 ---EVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEE 492 (707)
Q Consensus 417 ---~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~ 492 (707)
++...++.+-+.-.......+|+|+---+..+-+.+.+. .... .+|.+.|+ ++++.+|+..|... ..
T Consensus 88 Vpde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~---~vi~l~v~-~e~~~~Rl~~R~~~----~~- 158 (217)
T 3umf_A 88 VPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCL---CVINFDVS-EEVMRKRLLKRAET----SN- 158 (217)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCS---EEEEEECC-HHHHHHHHSCC----------
T ss_pred CCHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccC---EEEeccCC-HHHHHHHHhccccc----CC-
Confidence 122222222111122345678999977676665555544 2222 23444564 67777888665321 11
Q ss_pred CChHHHHHHHHHHHHhhhhhccCCC
Q 005233 493 PDFEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 493 ~d~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
..++..+-+.+|++.|.+.-+|+-
T Consensus 159 -R~DD~~e~i~~Rl~~Y~~~t~pl~ 182 (217)
T 3umf_A 159 -RVDDNEETIVKRFRTFNELTKPVI 182 (217)
T ss_dssp --CHHHHHHHHHHHHHHHHHTHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 234455667889999988777763
No 74
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.64 E-value=2.5e-08 Score=98.83 Aligned_cols=116 Identities=14% Similarity=0.200 Sum_probs=65.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCC----CCCCCCC---CHHHHHHHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRAD---NPEGMEARNEVAALAME 424 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~----~~f~~~~---~e~~~~~~~~vA~~~l~ 424 (707)
.|+|+|.|||||||+|+.|++.++.. +++.|++ |+........ ..++... ... ....++...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~l~ 73 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE---VTIGIVKERLG 73 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHH---HHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHh
Confidence 58899999999999999999886544 4566554 3322211000 0000000 110 11111111111
Q ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHh
Q 005233 425 DMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLK 482 (707)
Q Consensus 425 d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r 482 (707)
.. ..+..+|+|+.......+..+.+. ...+..+ .+|.+.|+ ++++.+|+..|
T Consensus 74 ----~~-~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R 127 (216)
T 3dl0_A 74 ----KD-DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVD-KDVLMERLTGR 127 (216)
T ss_dssp ----SG-GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-GGGHHHHHHTE
T ss_pred ----cc-cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHCC
Confidence 11 237789999987888877777766 4444333 34555665 57777778776
No 75
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.64 E-value=3.7e-08 Score=97.46 Aligned_cols=148 Identities=17% Similarity=0.197 Sum_probs=81.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHHH-------HHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN-------EVAALAME 424 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~~l~ 424 (707)
.|+++|.|||||||+|+.|++.++.. +++.|+. |+...+. .. ........+. .+....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~-~~------~~~~~~~~~~~g~~~~~~~~~~~~~ 69 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP-----HISTGDMFRAAIKNG-TE------LGLKAKSFMDQGNLVPDEVTIGIVH 69 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHHTT-CH------HHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EeeHHHHHHHHHhcC-CH------HHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 58899999999999999999987654 3555544 4322211 00 0000000000 11111111
Q ss_pred HHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhc------------CCC
Q 005233 425 DMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQ------------SPD 488 (707)
Q Consensus 425 d~~~~L~--~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r~~~------------~pd 488 (707)
..+. ..+..+|+|+.....+.+..+.+. .+.+..+ .+|.+.| +++++.+|+..|... .|.
T Consensus 70 ---~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~-~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 145 (216)
T 3fb4_A 70 ---ERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKV-EQEELMKRLTGRWICKTCGATYHTIFNPPA 145 (216)
T ss_dssp ---HHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHHHSEEEETTTCCEEETTTBCCS
T ss_pred ---HHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHHcCCCCCccCCccccccCCCC
Confidence 1222 236789999987888877777766 4444333 3444556 467888888777210 010
Q ss_pred CCC----------CCChHHHHHHHHHHHHhhhhhccCCC
Q 005233 489 YAE----------EPDFEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 489 ~s~----------~~d~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
..+ . ..++..+.+.+|+..|.+..+|+.
T Consensus 146 ~~~~~~~~~~~l~~-r~~d~~e~i~~rl~~~~~~~~~~~ 183 (216)
T 3fb4_A 146 VEGICDKDGGELYQ-RIDDKPETVKNRLDVNMKQTQPLL 183 (216)
T ss_dssp STTBCTTTCCBEEC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCcccc-CCCCCHHHHHHHHHHHHHhHHHHH
Confidence 000 0 123345667888888887777664
No 76
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.62 E-value=1.1e-07 Score=97.04 Aligned_cols=163 Identities=14% Similarity=0.147 Sum_probs=91.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHH-------HHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARN-------EVAAL 421 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~-------~vA~~ 421 (707)
.+|++|+|+|.|||||||+|+.|+++++.. +++.|+.-|.....+.. ........+. ++...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~-----~is~~~~~r~~~~~~~~------~g~~i~~~~~~g~~~~~~~~~~ 95 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYC-----HLSTGDLLREAAEKKTE------LGLKIKNIINEGKLVDDQMVLS 95 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTTSSSH------HHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EEecHHHHHHHHhccch------HHHHHHHHHhcCCCCcHHHHHH
Confidence 368999999999999999999999987543 45565553322111100 0000000000 01111
Q ss_pred HHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcC-----------
Q 005233 422 AMEDMISWMH--EGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQS----------- 486 (707)
Q Consensus 422 ~l~d~~~~L~--~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r~~~~----------- 486 (707)
. +...+. ..+..+|+|+...+..+...+.++ ...+..+ .+|.+.|+ ++++.+|+..|....
T Consensus 96 ~---~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p-~e~~~~Rl~~R~~~~~~g~~y~~~~~ 171 (243)
T 3tlx_A 96 L---VDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVP-DEVLVNRISGRLIHKPSGRIYHKIFN 171 (243)
T ss_dssp H---HHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTTB
T ss_pred H---HHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCC-HHHHHHHHHcCCCCcccCcccccccC
Confidence 1 112222 237789999976777777776665 4333322 34445564 688888888775310
Q ss_pred -C------CCC----CCCChHHHHHHHHHHHHhhhhhccCCCCC----CeeEEeec
Q 005233 487 -P------DYA----EEPDFEAGLQDFKNRLANYEKVYEPVDEG----SYIKMIDM 527 (707)
Q Consensus 487 -p------d~s----~~~d~e~a~~df~~Ri~~y~~~yEpl~e~----~yik~in~ 527 (707)
| |.. -. ..++..+.+.+|+..|.+..+|+.+- ..+..||.
T Consensus 172 pp~~~~~~~~~~~~l~~-r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~ 226 (243)
T 3tlx_A 172 PPKVPFRDDVTNEPLIQ-REDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDA 226 (243)
T ss_dssp CCSSTTBCTTTCCBCBC-CGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEET
T ss_pred CCcccCccccccccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEC
Confidence 0 000 00 22345567889999998888776531 34445554
No 77
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.61 E-value=3.7e-08 Score=98.23 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=64.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH-HhhCCCCCCCCCCCCCHHHHHHH-------HHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR-LKHGVNQSADFFRADNPEGMEAR-------NEVAAL 421 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr-~~~g~~~~~~f~~~~~e~~~~~~-------~~vA~~ 421 (707)
+++.|+|+|.|||||||+|+.|+++|++. +++.|++-+ ...+... ........+ .+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~li~~~~~~~t~-------~g~~i~~~~~~g~~~~~~~~~~ 71 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLA-----HLSTGDMLREAIKNGTK-------IGLEAKSIIESGNFVGDEIVLG 71 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTC---------CCHHHHHHHHHTCCCCHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCce-----EEehhHHHHHHHHcCCH-------HHHHHHHHHHCCCcCCHHHHHH
Confidence 34689999999999999999999998643 455555533 2221100 011000000 011111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHHhh
Q 005233 422 AMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 422 ~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~-vifIE~~c~d~e~i~~rI~~r~ 483 (707)
++.+.+.- ...|..+|+|+...+.++.+.+..+ ...+.. .++|.+.| +++++.+|+..|.
T Consensus 72 ~i~~~l~~-~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~-~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 72 LVKEKFDL-GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEI-DDSEIIERISGRC 133 (217)
T ss_dssp HHHHHHHT-TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC-CHHHHHHHHHTEE
T ss_pred HHHHHHhc-cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHHcCC
Confidence 11111110 1236778899866666666665543 333321 13444455 4778888887764
No 78
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.61 E-value=4.9e-08 Score=93.85 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=35.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+++|+++|.|||||||+|+.|+++|+..|++..+++.|++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 4689999999999999999999999977777778887765
No 79
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.59 E-value=1.2e-07 Score=91.25 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=35.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
.+|+++|.|||||||+|+.|+++|+..|+....++.|++-
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 4799999999999999999999999888888888877663
No 80
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.55 E-value=2.6e-07 Score=87.28 Aligned_cols=29 Identities=31% Similarity=0.266 Sum_probs=25.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (707)
+|+++|.|||||||+|+.|++.+++..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~ 31 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIK 31 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeec
Confidence 79999999999999999999998755433
No 81
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.53 E-value=1.4e-07 Score=89.31 Aligned_cols=134 Identities=15% Similarity=0.236 Sum_probs=70.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
.|+++|.|||||||+|+.|+++|++. +++.|++.+...+... ..++....+..++... ..++..|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~-------~~~l~~l~~ 68 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKREGLSI-PQIFEKKGEAYFRKLE-------FEVLKDLSE 68 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSCH-HHHHHHSCHHHHHHHH-------HHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHcCCCH-HHHHHHhChHHHHHHH-------HHHHHHHhc
Confidence 69999999999999999999997743 4666666654433110 1111222333332211 112223444
Q ss_pred CCeEEEEeC--CCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 005233 433 GGQVGIFDA--TNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLANY 509 (707)
Q Consensus 433 ~G~vVIlDA--tn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~~y 509 (707)
.+..||.|+ ....+..++.+ .+.+ .++||+ | +++++.+|+..|. .+|.+.+ ..+.+.+.|.+|.+.|
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l---~~~~-~~i~l~--~-~~e~~~~R~~~r~-~r~~~~~--~~~~i~~~~~~~~~~~ 137 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFM---KSRG-TTVFID--I-PFEVFLERCKDSK-ERPLLKR--PLDEIKNLFEERRKIY 137 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHH---HTTS-EEEEEE--C-CHHHHHHHCBCTT-CCBGGGS--CGGGTHHHHHHHHHHH
T ss_pred cCCeEEECCCCEeCCHHHHHHH---HcCC-EEEEEE--C-CHHHHHHHHhCCC-CCCCCcc--hHHHHHHHHHHHHHHH
Confidence 566676643 22344444433 2222 345554 5 5777777776543 2343321 1344445555554443
No 82
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.52 E-value=2.5e-07 Score=105.62 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=80.2
Q ss_pred cCCCCCccchhhHHhhhhcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcC-CceEEEechhhHHHhhCCCCCCC
Q 005233 324 KNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG-HDTKHFNVGKYRRLKHGVNQSAD 402 (707)
Q Consensus 324 ~~~~p~~~~~~a~~~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g-i~tdv~~~ddyRr~~~g~~~~~~ 402 (707)
....|.+..........+......-.++.+|+|+|++|||||||++.|+..|...+ .....++.+++++.+ .....
T Consensus 342 G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l---~~~l~ 418 (552)
T 3cr8_A 342 GLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL---SSELG 418 (552)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHT---TSSCC
T ss_pred CCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhh---ccccC
Confidence 44444444333333344333333334678999999999999999999999987544 345668888886532 12223
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHH
Q 005233 403 FFRADNPEGMEARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIR 480 (707)
Q Consensus 403 f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~ 480 (707)
|...+....++.+..++.. +...+.++|.....+....|+.++++ .+.+ .+++|.+.|+ .+++.+|++
T Consensus 419 f~~~~r~~~~r~i~~v~q~--------l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~-~e~~~~R~~ 487 (552)
T 3cr8_A 419 FSKAHRDVNVRRIGFVASE--------ITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATP-IETCESRDR 487 (552)
T ss_dssp CSHHHHHHHHHHHHHHHHH--------HHHTTCEEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------
T ss_pred CCHHHHHHHHHHHHHHHHH--------HHhcCCEEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcCC-HHHHHHhcc
Confidence 3222222223333333322 33467888888777667788888887 5555 5555655554 566677653
No 83
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.49 E-value=3.9e-07 Score=91.43 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=64.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQS----ADFFRADNPEGMEARNEVAALAMEDM 426 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~----~~f~~~~~e~~~~~~~~vA~~~l~d~ 426 (707)
++|+|+|.|||||||+|+.|+++++. .+++.|++ |+...+.... ..++.............++...+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~-----~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~-- 73 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSL-----AHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLE-- 73 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC-----eEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHh--
Confidence 36999999999999999999998753 45666665 3321110000 000000000000111122222222
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCce-EEEEEEEeCCHHHHHHHHHHhh
Q 005233 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCK-IIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 427 ~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~-vifIE~~c~d~e~i~~rI~~r~ 483 (707)
-. . |..||+|+......+++.+.++ ...+.. -++|.+.| +++++.+|+..|.
T Consensus 74 --~~-~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~-~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 74 --SK-G-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILL-PREVAKNRIMGRR 127 (223)
T ss_dssp --HH-C-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHTBC
T ss_pred --cc-c-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHHccc
Confidence 01 1 7789999866666666666554 333321 13344455 5788888887764
No 84
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.48 E-value=3.1e-07 Score=87.19 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=30.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 394 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~ 394 (707)
.+|+++|.|||||||+|+.|++.|++. +++.|++.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~d~~~~~~ 40 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYE-----FVDTDIFMQHT 40 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCc-----EEcccHHHHHH
Confidence 369999999999999999999998754 56667766544
No 85
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.48 E-value=6.5e-08 Score=96.94 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=75.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCC----CCCCCCC---CCHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQ----SADFFRA---DNPEGMEARNEVAAL 421 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~----~~~f~~~---~~e~~~~~~~~vA~~ 421 (707)
++++|+++|.|||||||+|+.|++.+++. +++.|++ |....+... ...++.. ...+ ....++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~---~~~~~~~- 76 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELK-----HLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDD---VMTRLAL- 76 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSE-----EEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHH---HHHHHHH-
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCe-----EEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHH---HHHHHHH-
Confidence 46789999999999999999999987654 3555544 332211000 0000000 0111 0011111
Q ss_pred HHHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhc---C-----------
Q 005233 422 AMEDMISWMHE-GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQ---S----------- 486 (707)
Q Consensus 422 ~l~d~~~~L~~-~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~---~----------- 486 (707)
..+.+ .+..+|+|+...+..+.+.+..+...+ .++|| .| +++++.+|+..|... .
T Consensus 77 ------~~l~~~~~~~~vid~~~~~~~~~~~l~~~~~~~-~vi~L--~~-~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~ 146 (227)
T 1zd8_A 77 ------HELKNLTQYSWLLDGFPRTLPQAEALDRAYQID-TVINL--NV-PFEVIKQRLTARWIHPASGRVYNIEFNPPK 146 (227)
T ss_dssp ------HHHHTCTTSCEEEESCCCSHHHHHHHHTTSCCC-EEEEE--EC-CHHHHHHHHTCEEEETTTTEEEETTTBCCS
T ss_pred ------HHHhcccCCCEEEeCCCCCHHHHHHHHHhcCCC-EEEEE--EC-CHHHHHHHHHcCcCCCccCCccccccCCCC
Confidence 11222 356688899877765544444332222 34454 45 467777777655210 0
Q ss_pred ----------CCCCCCCChHHHHHHHHHHHHhhhhhccCC
Q 005233 487 ----------PDYAEEPDFEAGLQDFKNRLANYEKVYEPV 516 (707)
Q Consensus 487 ----------pd~s~~~d~e~a~~df~~Ri~~y~~~yEpl 516 (707)
+... ..++..+.+.+|+..|.+..+|+
T Consensus 147 ~~~~~~~~~~~l~~---r~~~~~e~~~~r~~~y~~~~~~l 183 (227)
T 1zd8_A 147 TVGIDDLTGEPLIQ---REDDKPETVIKRLKAYEDQTKPV 183 (227)
T ss_dssp STTBCTTTCCBCBC---CGGGSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccC---CCCCCHHHHHHHHHHHHHHHHHH
Confidence 0000 12345567888888887776554
No 86
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.45 E-value=2.8e-06 Score=82.85 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=27.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
++.+|+++|.|||||||+|+.|+++|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 367999999999999999999999998766
No 87
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.45 E-value=3.8e-06 Score=82.32 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=33.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (707)
++++|+++|.|||||||+|+.|+++|+..+++++.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 5679999999999999999999999999999887764
No 88
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.41 E-value=3e-06 Score=84.75 Aligned_cols=144 Identities=19% Similarity=0.280 Sum_probs=85.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHHH----------HHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEARN----------EVAA 420 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~~----------~vA~ 420 (707)
++|+|.|.|||||+|.|+.|+++++... ++.||. |..... .++.+..... ++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~-----istGdllR~~i~~----------~t~lg~~~~~~~~~G~lvpd~iv~ 65 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVH-----ISTGDILREAVQK----------GTPLGKKAKEYMERGELVPDDLII 65 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEE-----EEHHHHHHHHHHH----------TCHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeE-----EcHHHHHHHHHHh----------cChhhhhHHHHHhcCCcCCHHHHH
Confidence 4789999999999999999999976543 555665 432211 1111111111 1222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceE-EEEEEEeCCHHHHHHHHHHhhhcCCC----C-----
Q 005233 421 LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKI-IFLETICNDRDIIERNIRLKIQQSPD----Y----- 489 (707)
Q Consensus 421 ~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~v-ifIE~~c~d~e~i~~rI~~r~~~~pd----~----- 489 (707)
.++ ...+.+ ...+|+|+-.-+..+.+.+..+ .+.+.++ .+|++.|+ ++++.+|+..|... +. |
T Consensus 66 ~lv---~~~l~~-~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~-~e~l~~Rl~~R~~~-~~~g~~y~~~~~ 139 (206)
T 3sr0_A 66 ALI---EEVFPK-HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVP-DEVVIERLSGRRIN-PETGEVYHVKYN 139 (206)
T ss_dssp HHH---HHHCCS-SSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEEC-TTTCCEEETTTB
T ss_pred HHH---HHhhcc-CCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCC-HHHHHHHHhCCccc-cCCCceeeeecc
Confidence 222 222333 3348899988888888877766 5545433 34555675 56666677776421 11 0
Q ss_pred -------CCCCChHHHHHHHHHHHHhhhhhccCCC
Q 005233 490 -------AEEPDFEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 490 -------s~~~d~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
... ..++-.+-+++|++.|.+..+|+-
T Consensus 140 pp~~g~~l~~-r~DD~~e~i~~Rl~~Y~~~t~pl~ 173 (206)
T 3sr0_A 140 PPPPGVKVIQ-REDDKPEVIKKRLEVYREQTAPLI 173 (206)
T ss_dssp CCCTTCCCBC-CGGGSHHHHHHHHHHHHHHTTHHH
T ss_pred CCCCCceecc-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 001 234455668899999998888864
No 89
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.39 E-value=3.1e-07 Score=87.97 Aligned_cols=133 Identities=17% Similarity=0.281 Sum_probs=70.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISWMHE 432 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~L~~ 432 (707)
.|+++|.|||||||+|+.|++.|++. .++.|++++...+... ..++....+..++..+ ..++..+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~-----~~d~d~~~~~~~g~~~-~~~~~~~g~~~~~~~~-------~~~~~~l~~ 72 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV-----FLDSDFLIEQKFNQKV-SEIFEQKRENFFREQE-------QKMADFFSS 72 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHHTSCH-HHHHHHHCHHHHHHHH-------HHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcccHHHHHHcCCCH-HHHHHHcCHHHHHHHH-------HHHHHHHHc
Confidence 58999999999999999999998754 4667777664433211 1122222222222221 112223443
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhh-hcCCCCCCCCChHHHHHHHHHHHHhhh
Q 005233 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKI-QQSPDYAEEPDFEAGLQDFKNRLANYE 510 (707)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~-~~~pd~s~~~d~e~a~~df~~Ri~~y~ 510 (707)
....|| +........+. +.+.+ .++|+. | +.+++.+|+..+. ..+|+.. +.+...+.|.+|.+.|.
T Consensus 73 ~~~~vi-~~g~~~~~~~~----l~~~~-~~i~l~--~-~~e~~~~R~~~r~~~~r~~~~---~~~~i~~~~~~r~~~y~ 139 (175)
T 1via_A 73 CEKACI-ATGGGFVNVSN----LEKAG-FCIYLK--A-DFEYLKKRLDKDEISKRPLFY---DEIKAKKLYNERLSKYE 139 (175)
T ss_dssp CCSEEE-ECCTTGGGSTT----GGGGC-EEEEEE--C-CHHHHTTCCCGGGTTTSCTTC---CHHHHHHHHHHHHHHHH
T ss_pred cCCEEE-ECCCCEehhhH----HhcCC-EEEEEe--C-CHHHHHHHHhcccCCCCCCcc---cHHHHHHHHHHHHHHHH
Confidence 344444 43322211122 32323 355554 4 5777777776552 2345443 24555566667776664
No 90
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.39 E-value=8.6e-06 Score=82.42 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=29.8
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
.++.+|++.|.|||||||+++.|++.|.. +.++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 35789999999999999999999999987 76553
No 91
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.36 E-value=4.8e-07 Score=91.13 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=29.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
.++.|+|+|.|||||||+|+.|+++|++. +++.|++
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~l 50 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVC-----HLATGDM 50 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCc-----eecHHHH
Confidence 46789999999999999999999997643 4555554
No 92
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.35 E-value=7.8e-07 Score=91.69 Aligned_cols=139 Identities=15% Similarity=0.155 Sum_probs=71.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhh-CCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH-GVNQSADFFRADNPEGMEARNE-VAALAMEDMIS 428 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~-g~~~~~~f~~~~~e~~~~~~~~-vA~~~l~d~~~ 428 (707)
...|+++|+|||||||+++.|++.|++. .++.|++.+... +. ....+|....+..++.++. ++..++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~-----~~d~d~~~~~~~~g~-~i~~i~~~~ge~~fr~~e~~~l~~l~----- 116 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYT-----FFDCDTLIEQAMKGT-SVAEIFEHFGESVFREKETEALKKLS----- 116 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHSTTS-CHHHHHHHHCHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCc-----EEeCcHHHHHHhcCc-cHHHHHHHhCcHHHHHHHHHHHHHHH-----
Confidence 3479999999999999999999998765 455566655443 21 1122333344544544332 222211
Q ss_pred HHhcCCeEEEEeCC--CCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh-hhcCCCCCCCCC--------hHH
Q 005233 429 WMHEGGQVGIFDAT--NSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK-IQQSPDYAEEPD--------FEA 497 (707)
Q Consensus 429 ~L~~~G~vVIlDAt--n~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r-~~~~pd~s~~~d--------~e~ 497 (707)
......||.++. ....+.+..+ . .+ .++||. | +.+++.+|+..+ ...+|...+. + .+.
T Consensus 117 --~~~~~~Via~GgG~v~~~~~~~~l---~-~~-~vV~L~--a-~~e~l~~Rl~~~~~~~Rpl~~~~-~~~d~~~~~~~~ 185 (250)
T 3nwj_A 117 --LMYHQVVVSTGGGAVIRPINWKYM---H-KG-ISIWLD--V-PLEALAHRIAAVGTGSRPLLHDD-ESGDTYTAALNR 185 (250)
T ss_dssp --HHCSSEEEECCGGGGGSHHHHHHH---T-TS-EEEEEE--C-CHHHHHHHHHC-----------------CHHHHHHH
T ss_pred --hhcCCcEEecCCCeecCHHHHHHH---h-CC-cEEEEE--C-CHHHHHHHHhhcCCCCCCcccCC-CcccchhhHHHH
Confidence 121345554432 2233333333 2 23 466665 4 577788888752 2335655542 2 244
Q ss_pred HHHHHHHHHHhhhh
Q 005233 498 GLQDFKNRLANYEK 511 (707)
Q Consensus 498 a~~df~~Ri~~y~~ 511 (707)
..+.+.+|.+.|+.
T Consensus 186 l~~l~~eR~~lY~~ 199 (250)
T 3nwj_A 186 LSTIWDARGEAYTK 199 (250)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 56667777776653
No 93
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.32 E-value=5.6e-06 Score=80.03 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=63.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCC-CH----HHHHHHHHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRAD-NP----EGMEARNEVAALAMEDM 426 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~-~e----~~~~~~~~vA~~~l~d~ 426 (707)
.+|+++|.|||||||+++.|+..+. ....++.+++++... .++..+. .. ..++.+...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~----g~~~i~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~------ 67 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDIINHMVV-----GGYRPPWESDELLALTWKNITDLTV------ 67 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHHHTTCC-----TTCCCGGGCHHHHHHHHHHHHHHHH------
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC----CeEEEcccchhhhhc-----cccccCccchhHHHHHHHHHHHHHH------
Confidence 5899999999999999999987432 124567777655321 1111111 11 11222222222
Q ss_pred HHHHhcCCeEEEEeCCCCCHHHHHHHHHH-H--cCCceEEEEEEEeCCHHHHHHHHHHhh
Q 005233 427 ISWMHEGGQVGIFDATNSSRKRRNMLMKM-A--EGNCKIIFLETICNDRDIIERNIRLKI 483 (707)
Q Consensus 427 ~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~--~~~~~vifIE~~c~d~e~i~~rI~~r~ 483 (707)
.+...+..+|+|.+. ....++.++++ . ..+.++.++.+.| +.+++.+|+..|.
T Consensus 68 --~~~~~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~-~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 68 --NFLLAQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWT-NREELLRRDALRK 123 (189)
T ss_dssp --HHHHTTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEEC-CHHHHHHHTTTSC
T ss_pred --HHHhcCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeC-CHHHHHHHHHhcc
Confidence 122356788999864 44445555555 2 2234555555455 6788888876653
No 94
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.28 E-value=1.8e-06 Score=88.60 Aligned_cols=115 Identities=12% Similarity=0.178 Sum_probs=63.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH---HHhhCCCCC---------CCCCC-------CCCHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR---RLKHGVNQS---------ADFFR-------ADNPEGM 412 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR---r~~~g~~~~---------~~f~~-------~~~e~~~ 412 (707)
.+|+++|.|||||||+|+.|++.+++. +++.|++. ....+.... ..|.. ..+...+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~-----~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f 76 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWP-----VVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESA 76 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCC-----EEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCe-----EEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHH
Confidence 379999999999999999999997654 45555532 111111110 01111 1233323
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH-Hc----CCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 413 EARNEVAALAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKM-AE----GNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 413 ~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l-~~----~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
.. .+..++ . +...|..+|+++... ..+..+ .. .++.+.++.+.+++.+++.+|+.+|..
T Consensus 77 ~~---~~~~~i----~-~~~~g~~vIl~gg~~-----~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~ 140 (253)
T 2ze6_A 77 HR---RLIFEV----D-WRKSEEGLILEGGSI-----SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVA 140 (253)
T ss_dssp HH---HHHHHH----H-TTTTSSEEEEEECCH-----HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred HH---HHHHHH----H-HHhCCCCeEEeccHH-----HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHH
Confidence 22 222222 1 223567777765442 123333 33 456666666666665888888888765
No 95
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.28 E-value=1.3e-06 Score=82.87 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=30.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKH 395 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~ 395 (707)
-.|+++|.|||||||+|+.|+++|++. +++.|++.+...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~-----~id~D~~~~~~~ 46 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLE-----VLDTDMIISERV 46 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHh
Confidence 379999999999999999999998764 455666555443
No 96
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.27 E-value=1.5e-06 Score=85.51 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=24.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++.+|+++|.|||||||+++.|++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 567899999999999999999999874
No 97
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.26 E-value=4.3e-07 Score=90.06 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
.|+++|.|||||||+|+.|+++++. .+++.|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~-----~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI-----PQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC-----CEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----eEEeHHHH
Confidence 4899999999999999999998753 34666555
No 98
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.25 E-value=1.1e-06 Score=83.59 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=31.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLK 394 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~ 394 (707)
+.+|+++|.|||||||+++.|+..+++ .+++.|++.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~-----~~id~d~~~~~~ 42 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM-----EFYDSDQEIEKR 42 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC-----EEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEeccHHHHHH
Confidence 457999999999999999999998764 456777665433
No 99
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.23 E-value=2.5e-05 Score=75.32 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=27.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
++|+++|.|||||||+|+.|+++|...|+...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 37999999999999999999999876666554
No 100
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.21 E-value=6.8e-05 Score=71.88 Aligned_cols=30 Identities=37% Similarity=0.470 Sum_probs=25.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCc
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (707)
++|+++|.|||||||+|+.|+++|...|+.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~ 30 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYF 30 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 379999999999999999999998554544
No 101
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.18 E-value=1.2e-06 Score=84.16 Aligned_cols=39 Identities=33% Similarity=0.349 Sum_probs=30.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~ 393 (707)
++.+|+++|+|||||||+|+.|++++++ ..++.|++.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~-----~~~~~d~~~~~ 48 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGL-----KYINVGDLARE 48 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCC-----eEEEHHHHHhh
Confidence 4567899999999999999999999764 34666666543
No 102
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.17 E-value=1e-06 Score=99.54 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=54.8
Q ss_pred cccCCCCCccchhhHHhhhhcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhh-cC-CceEEEechh
Q 005233 322 ETKNSMPAAAGAVAAAAVADQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LG-HDTKHFNVGK 389 (707)
Q Consensus 322 ~~~~~~p~~~~~~a~~~~~~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~g-i~tdv~~~dd 389 (707)
......|++......+.+.+....+..+.+.+|||+|+|||||||||++|+++|++ .| ..+..++.|+
T Consensus 366 r~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 366 RVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred hCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 45677888888888888888877766677899999999999999999999999997 53 4445555443
No 103
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.14 E-value=2.1e-06 Score=84.16 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=33.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (707)
++.+|+++|.|||||||+|+.|+++|+..+++++++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4679999999999999999999999999999887763
No 104
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.10 E-value=0.00018 Score=72.16 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=32.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
++++|++.|.+||||||+++.|+++|...|+++...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 467999999999999999999999999888887655
No 105
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.05 E-value=0.00028 Score=70.80 Aligned_cols=30 Identities=33% Similarity=0.360 Sum_probs=28.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCC
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi 380 (707)
+++|++.|.+||||||+++.|+++|...|+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 569999999999999999999999998887
No 106
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.05 E-value=5.8e-06 Score=82.26 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=28.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCce
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~t 382 (707)
++++|+++|.|||||||+|+.|+++|++..+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 467899999999999999999999987655443
No 107
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.03 E-value=3e-05 Score=78.95 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=35.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhc-----CCceEEEechhhH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-----GHDTKHFNVGKYR 391 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-----gi~tdv~~~ddyR 391 (707)
.++++|.++|.|||||||+|+.|++.|++. +..+.+++.|+|-
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 367899999999999999999999998864 4556678888873
No 108
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.01 E-value=0.00012 Score=74.84 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=31.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCc-eEEE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD-TKHF 385 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~-tdv~ 385 (707)
++.+|++.|.+||||||+++.|+++|...+++ +...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 46799999999999999999999999998888 4444
No 109
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.98 E-value=1.3e-05 Score=77.73 Aligned_cols=38 Identities=29% Similarity=0.514 Sum_probs=30.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH-HhhcCCceEEEechhhHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY-LRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~-L~~~gi~tdv~~~ddyRr 392 (707)
++.+|+++|.|||||||+|+.|++. +++ .+++.|++-+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~-----~~id~d~~~~ 47 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGF-----QHLEVGKLVK 47 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTE-----EEEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC-----EEeeHHHHHH
Confidence 4568999999999999999999998 554 3466666543
No 110
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.97 E-value=1.6e-05 Score=81.04 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=77.6
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh-HHHhhCCCCCCCCCCCCCHHHHHHH----------HH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY-RRLKHGVNQSADFFRADNPEGMEAR----------NE 417 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy-Rr~~~g~~~~~~f~~~~~e~~~~~~----------~~ 417 (707)
...+-+-+.|.|||||||+|+.|++.++... ++.|+. |..... . ++.+.... .+
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~-----is~gdllR~~~~~-~---------t~lG~~i~~~~~~G~lvpde 70 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEKFGIPQ-----ISTGDMLRAAVKA-G---------TPLGVEAKTYMDEGKLVPDS 70 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHHHTCCE-----ECHHHHHHHHHHT-T---------CHHHHHHHHHHTTTCCCCHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHHHhCCCe-----eechHHHHHhccC-C---------ChHHHHHHHHHhhccccccH
Confidence 3455678999999999999999999976554 555554 332211 0 11110000 01
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHcCCce-EEEEEEEeCCHHHHHHHHHHhhhcC--------
Q 005233 418 VAALAMEDMISWMHE--GGQVGIFDATNSSRKRRNMLMKMAEGNCK-IIFLETICNDRDIIERNIRLKIQQS-------- 486 (707)
Q Consensus 418 vA~~~l~d~~~~L~~--~G~vVIlDAtn~~~e~R~~l~~l~~~~~~-vifIE~~c~d~e~i~~rI~~r~~~~-------- 486 (707)
+...++. ..|.+ .+..+|+|+..-+..+-+.+.+ .+.. -.+|.+.|+ ++++.+|+..|....
T Consensus 71 i~~~ll~---~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~---~~~~~d~VI~Ldvp-~e~l~~Rl~~R~~~~~~G~~Yh~ 143 (230)
T 3gmt_A 71 LIIGLVK---ERLKEADCANGYLFDGFPRTIAQADAMKE---AGVAIDYVLEIDVP-FSEIIERMSGRRTHPASGRTYHV 143 (230)
T ss_dssp HHHHHHH---HHHHSGGGTTCEEEESCCCSHHHHHHHHH---TTCCCSEEEEECCC-HHHHHHHHHTEEEETTTTEEEET
T ss_pred HHHHHHH---HHHhCcccCCCeEecCCCCcHHHHHHHHH---hCCCccEEEEEeCC-HHHHHHHHHcCCcccccCCcccc
Confidence 1111121 12221 2345788996556554444432 2211 123444564 677888888775310
Q ss_pred ----CCCCC----------CCChHHHHHHHHHHHHhhhhhccCCC
Q 005233 487 ----PDYAE----------EPDFEAGLQDFKNRLANYEKVYEPVD 517 (707)
Q Consensus 487 ----pd~s~----------~~d~e~a~~df~~Ri~~y~~~yEpl~ 517 (707)
|...+ . ..++-.+-+.+|+..|.+.-+|+-
T Consensus 144 ~~~pp~~~~~~d~~g~~L~~-R~DD~~e~i~~Rl~~y~~~t~pl~ 187 (230)
T 3gmt_A 144 KFNPPKVEGKDDVTGEPLVQ-RDDDKEETVKKRLDVYEAQTKPLI 187 (230)
T ss_dssp TTBCCSSTTBCTTTCCBCBC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCccCcCCCccCcccc-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00000 1 345566778999999988877764
No 111
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.96 E-value=3.9e-05 Score=77.60 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=27.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCc
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHD 381 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~ 381 (707)
.+++|.+.|.+||||||+|+.|++.|++..++
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 46799999999999999999999998765433
No 112
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.90 E-value=9.6e-05 Score=71.39 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=23.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+|+++|.|||||||+|+.|+++|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6999999999999999999999875
No 113
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.89 E-value=9.6e-05 Score=71.06 Aligned_cols=119 Identities=12% Similarity=0.098 Sum_probs=62.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
.+.+|+++|.|||||||+++.|+.. .+.....++.+++++.... .....|..+.........+ .+......
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~-----~l~~~~~~ 78 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKH-GRIDPWLPQSHQQNRMIMQ-----IAADVAGR 78 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCS-SCCCTTSSSHHHHHHHHHH-----HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhc-ccccCCccchhhhhHHHHH-----HHHHHHHH
Confidence 4678999999999999999999875 3334456777777653211 1112333322211111111 11111111
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r 482 (707)
+...|..+++|+.... ..++.+ ...+..+..+..-| +++++..|+..+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~l~~~---~~~~~~~~~ls~~~-~~~v~~~R~~~r 126 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRP-DWLPAF---TALARPLHYIVLRT-TAAEAIERCLDR 126 (191)
T ss_dssp HHHTSCEEEECSCCCT-TTTHHH---HTTCSCEEEEEEEC-CHHHHHHHHHTT
T ss_pred HhccCCeEEEeccCcH-HHHHHH---HhcCCCeEEEEecC-CHHHHHHHHHhc
Confidence 2345777888986432 122222 21123334444455 577777777655
No 114
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.86 E-value=8.1e-06 Score=80.02 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=28.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKH 384 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv 384 (707)
++|+++|.+||||||+++.|+++|...++++.+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~ 33 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 379999999999999999999999876655443
No 115
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.85 E-value=7.7e-05 Score=75.70 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=29.4
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhc----CCceEEE
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL----GHDTKHF 385 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~----gi~tdv~ 385 (707)
.++++|++.|.+||||||+++.|+++|... |+++...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 357899999999999999999999999887 8777554
No 116
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.85 E-value=2.9e-05 Score=77.06 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=26.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
+.+|.+.|.+||||||+|+.|+++|++..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 46899999999999999999999987654
No 117
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.84 E-value=0.00022 Score=74.18 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
.++++|+++|.|||||||+|+.|+ .+++ .+++.|++.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~-----~~id~D~~~~ 110 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGA-----YIIDSDHLGH 110 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTC-----EEEEHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCC-----cEEehhHHHH
Confidence 367899999999999999999999 4443 4566666643
No 118
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.82 E-value=0.00011 Score=71.33 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+.+|.++|.+||||||+++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998753
No 119
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.78 E-value=0.0017 Score=64.48 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=27.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
..|++-|..||||||.++.|+++|. .++++...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 4799999999999999999999996 36665543
No 120
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.78 E-value=0.00022 Score=70.36 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=29.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
++++|+++|.+||||||+++.|++ ++. .+++.|++-+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~-----~~id~D~~~~ 39 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGI-----NVIDADIIAR 39 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTC-----EEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCC-----EEEEccHHHH
Confidence 478999999999999999999987 443 4566666544
No 121
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.77 E-value=0.00011 Score=72.44 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
+...++|.++|.+||||||+|+.|++.++. .+++.|++-+
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~-----~vid~D~~~~ 48 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGA-----HVVNVDRIGH 48 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCC-----EEEEHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCC-----EEEECcHHHH
Confidence 356789999999999999999999998653 4566666633
No 122
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.74 E-value=2.3e-05 Score=77.60 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++.+|+++|.+||||||+++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 466899999999999999999998764
No 123
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.73 E-value=0.0001 Score=71.39 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=30.8
Q ss_pred CCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 347 ~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
...++.+|.++|.|||||||+|+.|++. + ..+++.|++.+
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~-g-----~~~id~d~~~~ 43 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW-G-----YPVLDLDALAA 43 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT-T-----CCEEEHHHHHH
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC-C-----CEEEcccHHHH
Confidence 3456889999999999999999999986 3 34567776543
No 124
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.70 E-value=0.00032 Score=67.19 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=72.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
++-++.|+|.+||||||+++.+. ....+++.|.+|...... ....+ .....++.....+...+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~-------~~~~~~~~d~~~g~~~~~-~~~~~---~~~~~~~~~~~~~~~~~------ 70 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF-------KPTEVISSDFCRGLMSDD-ENDQT---VTGAAFDVLHYIVSKRL------ 70 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS-------CGGGEEEHHHHHHHHCSS-TTCGG---GHHHHHHHHHHHHHHHH------
T ss_pred CCEEEEEECCCCCCHHHHHHHHc-------cCCeEEccHHHHHHhcCc-ccchh---hHHHHHHHHHHHHHHHH------
Confidence 46799999999999999999843 123346666666543221 11111 11122333323333322
Q ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHH-HcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 005233 430 MHEGGQVGIFDATNSSRKRRNMLMKM-AEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAGLQDFKNRLA 507 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e~R~~l~~l-~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a~~df~~Ri~ 507 (707)
..|..+++|+++.....|++...+ .....+..++-+.. +...+..+.+.|.. . .. +++.+....+++.
T Consensus 71 --~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDE-Pt~~Ld~~~~~R~~----~-~~--~~~vi~~~~~~l~ 139 (171)
T 4gp7_A 71 --QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNL-PEKVCQERNKNRTD----R-QV--EEYVIRKHTQQMK 139 (171)
T ss_dssp --HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHTCSS----C-CC--CHHHHHHHHHHHH
T ss_pred --hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeC-CHHHHHHHHhcccC----C-CC--CHHHHHHHHHHhh
Confidence 368899999999998766665555 44444444443333 45566666555432 1 23 4455555544444
No 125
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.69 E-value=0.00011 Score=78.79 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=29.0
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
..++.+|+++|.+||||||||..|++.++. .++|.|.
T Consensus 37 ~~~~~lIvI~GPTgsGKTtLa~~LA~~l~~-----eiIs~Ds 73 (339)
T 3a8t_A 37 HRKEKLLVLMGATGTGKSRLSIDLAAHFPL-----EVINSDK 73 (339)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHTTSCE-----EEEECCS
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHCCC-----cEEcccc
Confidence 345679999999999999999999988653 4555543
No 126
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.67 E-value=0.00013 Score=70.84 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=29.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRL 393 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~ 393 (707)
+|.++|.|||||||+|+.|++.|+. .+++.|++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~-----~~~d~d~~~~~ 39 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV-----PYLSSGLLYRA 39 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC-----CEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC-----ceeccchHHHh
Confidence 8999999999999999999998774 34666666543
No 127
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.66 E-value=0.00057 Score=69.00 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=26.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
+|.+|+++|.|||||||+++.|+++++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 467999999999999999999999987554
No 128
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.64 E-value=0.00015 Score=77.48 Aligned_cols=28 Identities=39% Similarity=0.288 Sum_probs=24.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
+.+|+++|.+||||||+|+.|++.++..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~ 32 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCE 32 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 4689999999999999999999987643
No 129
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.59 E-value=0.00027 Score=70.93 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=66.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC----------CCCCCCCC---H------
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS----------ADFFRADN---P------ 409 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~----------~~f~~~~~---e------ 409 (707)
..-..|-++|.+||||||+|+.|++ +++. +++.|.+-+.....+.. ..++.+++ .
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~g~~-----vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~ 80 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-RGAS-----LVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRAL 80 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-TTCE-----EEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-CCCc-----EEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHH
Confidence 3456899999999999999999987 5554 45556555443322211 22333222 1
Q ss_pred -----HHHHHHHHHHH-HHHHHHHHHHhcC-CeEEEEeCCCCCH-HHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHH
Q 005233 410 -----EGMEARNEVAA-LAMEDMISWMHEG-GQVGIFDATNSSR-KRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRL 481 (707)
Q Consensus 410 -----~~~~~~~~vA~-~~l~d~~~~L~~~-G~vVIlDAtn~~~-e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~ 481 (707)
+..+.++.+.. ...+++..++.+. +..||+|+.-... ..- ..+ .+ .+++| .| ++++..+|+..
T Consensus 81 vF~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~---~~~--~D-~vi~V--~a-p~e~r~~Rl~~ 151 (210)
T 4i1u_A 81 IFSDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNW---KAR--CD-RVLVV--DC-PVDTQIARVMQ 151 (210)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHH---HHH--CS-EEEEE--EC-CHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCc---ccc--CC-eEEEE--EC-CHHHHHHHHHh
Confidence 12222232222 1223344555543 4578999987665 321 122 12 34454 45 57777777776
Q ss_pred hh
Q 005233 482 KI 483 (707)
Q Consensus 482 r~ 483 (707)
|.
T Consensus 152 Rd 153 (210)
T 4i1u_A 152 RN 153 (210)
T ss_dssp HH
T ss_pred cC
Confidence 63
No 130
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.55 E-value=0.0011 Score=64.55 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=27.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
++|.++|.|||||||+++.|+. ++ ..+++.|++.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg-----~~~id~d~~~~ 37 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG-----VPLVDADVVAR 37 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT-----CCEEEHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC-----CcccchHHHHH
Confidence 5899999999999999999987 43 33567776644
No 131
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.51 E-value=0.00014 Score=70.40 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.+|+++|.+||||||+.+.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998765
No 132
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.50 E-value=0.00018 Score=70.16 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=27.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
+|.++|.|||||||+++.|++ ++ ..+++.|++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g-----~~~i~~d~~~~ 36 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG-----AYVLDADKLIH 36 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT-----CEEEEHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC-----CEEEEccHHHH
Confidence 689999999999999999998 64 44566776644
No 133
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.50 E-value=0.00026 Score=69.65 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
||++|.+|+|||||.+.|.+.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987753
No 134
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.49 E-value=0.00058 Score=66.82 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=29.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
.+.+|.++|.|||||||+|+.|++.+. ...+++.|++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 467999999999999999999998642 3456777666
No 135
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.41 E-value=0.0038 Score=61.30 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=29.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
|++|+++|.|||||||+|+.|++.++. .+++.|++-
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~-----~~~~~d~~~ 38 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM-----IYVDTGAMY 38 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC-----EEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC-----ceecCChHH
Confidence 578999999999999999999998664 346666553
No 136
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.41 E-value=0.00016 Score=73.31 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=32.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEE
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKH 384 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~tdv 384 (707)
.++++|++.|++||||||+++.|+++|.. .|+++..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 36889999999999999999999999999 8888766
No 137
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.40 E-value=0.0028 Score=63.52 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=30.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
++.+|.++|.|||||||+++.|++.|+.. .++.|++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~-----~~d~d~~~~ 52 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFT-----YLDTGAMYR 52 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCE-----EEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCc-----eecCCCeeE
Confidence 46689999999999999999999987643 466666654
No 138
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.35 E-value=0.00034 Score=67.82 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=24.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
++++|+++|.|||||||+++.|+++|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999987
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.33 E-value=0.00074 Score=74.96 Aligned_cols=43 Identities=30% Similarity=0.468 Sum_probs=38.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
+|.+|+++|++|+||||++..|+.+|...|.++-+++.|.||-
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 5899999999999999999999999998899998888776643
No 140
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.27 E-value=0.00064 Score=65.84 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.+.+|+++|.|||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999876
No 141
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.26 E-value=0.005 Score=60.62 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=30.7
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
++|++-|..||||||.++.|+++|...|+++...
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4789999999999999999999999999887655
No 142
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.19 E-value=0.002 Score=65.52 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=30.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
.|++|+++|.|||||||+|+.|++.|++. .++.|.+.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~-----~~d~g~~~r 45 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGAR-----YLDTGAMYR 45 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCCcHHH
Confidence 57899999999999999999999998643 456666543
No 143
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.04 E-value=0.0031 Score=63.32 Aligned_cols=121 Identities=12% Similarity=0.138 Sum_probs=62.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh--cCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHH---------H
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNE---------V 418 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~--~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~---------v 418 (707)
...+++++|.+|||||||.+.|...+.. ...... +.. |....+.....+|... ....+..+.. +
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~-~tt---r~~~~~e~~gi~y~fq-~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS-HTT---RQPRPGEVHGEHYFFV-NHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCC-EEC---SCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEE-ecC---CCCCcccccCceEEEC-CHHHHHHHHhcCHHHHHHHH
Confidence 3568999999999999999999987641 111111 111 1101110011122111 1222221110 0
Q ss_pred HH----HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005233 419 AA----LAMEDMISWMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (707)
Q Consensus 419 A~----~~l~d~~~~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r 482 (707)
.. .-.+.+..++ +.|.++|+| .....+..++++...+. .+|| ...+.+.+++|+..|
T Consensus 90 ~~~~yg~~~~~v~~~l-~~G~illLD---LD~~~~~~i~~~l~~~~-tI~i--~th~~~~l~~Rl~~r 150 (219)
T 1s96_A 90 FGNYYGTSREAIEQVL-ATGVDVFLD---IDWQGAQQIRQKMPHAR-SIFI--LPPSKIELDRRLRGR 150 (219)
T ss_dssp TTEEEEEEHHHHHHHH-TTTCEEEEE---CCHHHHHHHHHHCTTCE-EEEE--ECSSHHHHHHHHHTT
T ss_pred HhccCCCCHHHHHHHH-hcCCeEEEE---ECHHHHHHHHHHccCCE-EEEE--ECCCHHHHHHHHHHc
Confidence 00 0001112222 369999999 77888888887733333 3343 345778888888554
No 144
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.01 E-value=0.00039 Score=72.85 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=34.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
++.+|.++|-+||||||+|+.|++.|+..+++..+++.|+|-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 467899999999999999999999998888888899998874
No 145
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=97.00 E-value=0.0014 Score=58.65 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=55.3
Q ss_pred CCCeEEEEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeE-EEEEeCCCCCceeeeEEEeeCCCCCceE
Q 005233 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWE-LSFVVPPNHETLDFKFLLKPKYGNGPCI 105 (707)
Q Consensus 27 ~~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~-ls~~~~~~~~~leyKf~l~~~~~~~~~~ 105 (707)
.|.++-|-.| + ..+.+-.-+| +.+|+|++..++.|+....+-|. .++++|.- ..|+||| + +.. ..
T Consensus 3 ~g~~vtiyY~---~--g~~~vylHyg--~~~g~Wt~~~~v~M~~~~~~gw~~~TI~l~~g-~~~~~~F--~---dG~-~~ 68 (104)
T 2laa_A 3 TGNKVTIYYK---K--GFNSPYIHYR--PAGGSWTAAPGVKMQDAEISGYAKITVDIGSA-SQLEAAF--N---DGN-NN 68 (104)
T ss_dssp CCCEEEEEEE---C--SSSSCEEEEE--ETTSCCCSSSCEECEEETTTTEEEEEEECTTC-SCEEEEE--E---CSS-SC
T ss_pred CCCEEEEEEc---C--CCCcEEEEEc--CCCCCCCcCCccccccccCCCeEEEEEECCCC-CEEEEEE--e---CCC-Cc
Confidence 4566666666 2 2233222233 77899999999999999877895 99999974 6799999 2 333 56
Q ss_pred eecCCCccccC
Q 005233 106 VEEGPNRLLTG 116 (707)
Q Consensus 106 ~E~g~NR~l~~ 116 (707)
||.+.||-...
T Consensus 69 WDNn~g~Nyt~ 79 (104)
T 2laa_A 69 WDSNNTKNYSF 79 (104)
T ss_dssp EESTTTSCEEE
T ss_pred CcCCCCccEEe
Confidence 99999998654
No 146
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.92 E-value=0.0028 Score=70.19 Aligned_cols=44 Identities=32% Similarity=0.421 Sum_probs=38.8
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
.+|.+|+|+|++|+||||++..|+.+|...|.++-+++.|-||-
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 35889999999999999999999999998898888888776653
No 147
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.86 E-value=0.0015 Score=64.04 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=36.8
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
..++.+|.++|.+||||||+++.|+..+...+..+.+++.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 34678999999999999999999999987777777777666653
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.85 E-value=0.0047 Score=65.26 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=36.6
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
..+.+|+++|.+|+||||+++.|+..+...+.++-+++.|.+|
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 3578999999999999999999999998778788777766554
No 149
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.76 E-value=0.019 Score=57.11 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=32.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
.+++|.++|.|||||+|+|+.|.+.++.. ...++..+|--|
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK 50 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLK 50 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHH
Confidence 57799999999999999999999876543 355677776544
No 150
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.76 E-value=0.00048 Score=67.98 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=29.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRR 392 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr 392 (707)
+.+|+++|.|||||||+|+.|++.+++. .++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~-----~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWH-----LLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCcceee
Confidence 4689999999999999999999987643 456666543
No 151
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.75 E-value=0.0035 Score=62.46 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=16.6
Q ss_pred cEEEEEEccCCCChHHHHHHHH-HHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLT-RYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~La-r~L 375 (707)
+.+|.++|.+||||||+++.|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999999 765
No 152
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.66 E-value=0.0073 Score=60.63 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
++++|++.|.+||||||+++.|+++|..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4679999999999999999999999876
No 153
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.65 E-value=0.0016 Score=62.58 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+.+|+++|.+|||||||++.|.+.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998764
No 154
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.63 E-value=0.006 Score=58.12 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=32.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR 391 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~ddyR 391 (707)
+..++++|-||+||||+++.|+..+. ..|.....++..++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 45789999999999999999999886 556666666665543
No 155
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.55 E-value=0.0054 Score=67.87 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=38.6
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEechhhH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKYR 391 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~ddyR 391 (707)
.+|.+|+++|.+|+||||++..|+.+|... |.++-+++.|-+|
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 457899999999999999999999999988 9999999888664
No 156
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.52 E-value=0.0098 Score=67.06 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=36.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
.++.+|+++|.||+||||++..|+.++...|.++-+++.|-||
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 4678999999999999999999999998888888888877654
No 157
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.45 E-value=0.013 Score=62.24 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=36.4
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
.++.+|.++|.+|+||||++..|+..+...+.++-+++.|-+|
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 4578999999999999999999999998878888777665443
No 158
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.45 E-value=0.0059 Score=63.56 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
...|..++++|.||+|||++|++|++.+ +.....++.+++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHh
Confidence 3467788999999999999999999997 455556666554
No 159
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.39 E-value=0.0039 Score=66.87 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=29.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+.+|+++|.+||||||+|+.|++.++ ..+++.|.|
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 46899999999999999999999876 456777664
No 160
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.34 E-value=0.0053 Score=60.28 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=33.0
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
..++.+|.++|.+|||||||++.|+..+...|...-.+..+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 3467899999999999999999999988744444455555443
No 161
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.29 E-value=0.027 Score=57.94 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=26.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCC
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi 380 (707)
.+.-|+|+|-||+|||++|+.+++.+...+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3456899999999999999999999976544
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.28 E-value=0.015 Score=54.33 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+..++++|-||+||||+|+.+++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445789999999999999999998864
No 163
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.27 E-value=0.0016 Score=66.37 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=26.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
.+.+|.++|.+||||||+++.|++.|+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 356899999999999999999999977643
No 164
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.23 E-value=0.004 Score=65.23 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=34.2
Q ss_pred CCCCcEEEEEEccCCCChHHHHHHHHHHHhhcC--CceEEE-echhh
Q 005233 347 KEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLG--HDTKHF-NVGKY 390 (707)
Q Consensus 347 ~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g--i~tdv~-~~ddy 390 (707)
...++.+|.++|-+||||||+|+.|++.+...+ .++.++ +.|+|
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 345789999999999999999999999987543 334444 66655
No 165
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.022 Score=60.34 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=30.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc--------CCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL--------GHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~--------gi~tdv~~~ 387 (707)
.+..++++|.||+||||+|+.+++.+... +.....++.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 34589999999999999999999987543 555555654
No 166
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.13 E-value=0.0027 Score=63.72 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=24.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+|++|++.|.+||||||+++.|+++|.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 468999999999999999999999974
No 167
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.12 E-value=0.022 Score=62.80 Aligned_cols=42 Identities=36% Similarity=0.366 Sum_probs=36.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
++.+|+++|.+|+||||++..|+..+...+.++-+++.|-+|
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 577899999999999999999999998888888888776554
No 168
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.04 E-value=0.0013 Score=66.97 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=25.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.++++|++.|.+||||||+|+.|+++|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999999873
No 169
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.03 E-value=0.01 Score=62.96 Aligned_cols=35 Identities=34% Similarity=0.368 Sum_probs=28.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
.|.+|+++|.+||||||||..|++.++ ..+++.|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP-----VELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC-----CcEEeccc
Confidence 467999999999999999999999854 44566543
No 170
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.01 E-value=0.013 Score=64.17 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=28.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+.+|+++|.+||||||||..|++.++. .+++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~-----~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG-----EVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE-----EEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC-----eEeecCc
Confidence 468999999999999999999999764 3565553
No 171
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.96 E-value=0.015 Score=55.55 Aligned_cols=26 Identities=38% Similarity=0.416 Sum_probs=23.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
++++|-||+|||++|+.+++.+...+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccc
Confidence 89999999999999999999875443
No 172
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.93 E-value=0.034 Score=58.42 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=24.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.+..++++|.||+||||+++.+++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4557899999999999999999998854
No 173
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.93 E-value=0.017 Score=60.53 Aligned_cols=41 Identities=34% Similarity=0.486 Sum_probs=35.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
+.+|+++|.+|+||||++..|+..+...+.++-+++.|-+|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 77899999999999999999999998888888888776443
No 174
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.91 E-value=0.0091 Score=59.20 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++.+|+++|.+|+|||||.+.|.+.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998764
No 175
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.88 E-value=0.0086 Score=63.67 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=28.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+.+|+++|.+||||||||..|++.++ ..+++.|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCc
Confidence 56899999999999999999998864 45566654
No 176
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.83 E-value=0.0086 Score=58.58 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=34.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+..++++|-||+||||+|+.+++.+...+.....++..++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4578899999999999999999999877777777877555
No 177
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.81 E-value=0.034 Score=59.22 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=33.4
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.++.+|.|+|.+||||||+.+.|+..+...+.+..+...|
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 4688999999999999999999999988776666655444
No 178
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.81 E-value=0.0074 Score=58.42 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=31.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (707)
..+|+++|.+||||||++.+|.+.|...|.++-++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 348999999999999999999999988888877773
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.80 E-value=0.041 Score=57.40 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=31.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
..++++|-||+||||+|+.|+..+...+.....++..++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 457889999999999999999998655666666766544
No 180
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.80 E-value=0.017 Score=64.97 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=34.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
.++.+|.|+|.+||||||+.+.|+..+...+-++.+...|.+|
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 4678999999999999999999999887666566555455443
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.80 E-value=0.064 Score=56.24 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=28.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
.+.-|+|+|-||+|||++|+++++.++ .....++..+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~v~~~~ 86 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSSD 86 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT---CEEEEEEHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC---CCEEEEchHH
Confidence 456799999999999999999999864 3444455433
No 182
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.78 E-value=0.073 Score=58.68 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=30.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc--CCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL--GHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~--gi~tdv~~~ddy 390 (707)
+--++++|-||+||||+|+.|+..+... +.....++..++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 3458899999999999999999988654 555556655443
No 183
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.77 E-value=0.011 Score=62.97 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=35.1
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhh--cCCceEEEechhh
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRW--LGHDTKHFNVGKY 390 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~--~gi~tdv~~~ddy 390 (707)
..+|++|.++|.+||||||+++.|+..+.. .+..+.++..|+|
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 567899999999999999999999998863 2345667777765
No 184
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.76 E-value=0.022 Score=53.12 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+..++++|-||+||||+|+.+++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445789999999999999999999854
No 185
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.74 E-value=0.047 Score=58.42 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=63.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh----HHHh-h---CCCCCCCCCCCCCHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY----RRLK-H---GVNQSADFFRADNPEGMEARNEVAAL 421 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy----Rr~~-~---g~~~~~~f~~~~~e~~~~~~~~vA~~ 421 (707)
..-++++.|-||+||||+|..++..+...+..+-+|+...- ..++ . +.....-....-+...+..+...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a--- 121 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC--- 121 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH---
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH---
Confidence 45699999999999999999999887767777777765321 1111 0 00000000000111111111111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHH-HHHHHHHH-HcC-CceEEEEEEE
Q 005233 422 AMEDMISWMHEGGQVGIFDATNSSRK-RRNMLMKM-AEG-NCKIIFLETI 468 (707)
Q Consensus 422 ~l~d~~~~L~~~G~vVIlDAtn~~~e-~R~~l~~l-~~~-~~~vifIE~~ 468 (707)
...+.+ ..+.|.|..+.+.. -|..++.+ .++ ++.+++|+..
T Consensus 122 -----~~~l~~-~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 122 -----FDHLSQ-KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp -----HHHHHH-SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred -----HHHHhc-CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEech
Confidence 112322 45777777666654 57777777 666 8999999864
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.63 E-value=0.044 Score=54.77 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=26.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
.+.-|+++|-||+|||++|+.|++.++ .....++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~~~~ 72 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMAG 72 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT---CCEEEEET
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEech
Confidence 345688999999999999999999864 34444443
No 187
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.60 E-value=0.0044 Score=68.53 Aligned_cols=43 Identities=40% Similarity=0.598 Sum_probs=37.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
..|.+|+++|.||+||||++..|+.++...|.++-+++.|-||
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 3467899999999999999999999998888888888877664
No 188
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.59 E-value=0.013 Score=58.97 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=34.7
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.++.+++++|.+|+||||++..|+..|. .+.++-+++.|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 3678999999999999999999999999 88888888764
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.58 E-value=0.098 Score=55.06 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.+.-|+|+|-||+|||++|+++++.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34678899999999999999999986
No 190
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.56 E-value=0.044 Score=53.17 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=28.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
...+++++|-||+||||+++.|+. ..+..+-.++..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence 345899999999999999999997 345566666553
No 191
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.49 E-value=0.0092 Score=58.13 Aligned_cols=27 Identities=37% Similarity=0.406 Sum_probs=24.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++.+|.++|-+||||||+++.|+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567999999999999999999999876
No 192
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.42 E-value=0.017 Score=60.48 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=32.7
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEechhh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGKY 390 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~ddy 390 (707)
.++.+|.++|-+||||||+++.|+..+. ...-...+++.|++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4678999999999999999999998876 33344556665544
No 193
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.41 E-value=0.014 Score=56.44 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=32.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
..|+++|-||+||||+|++|+..+...+.....++..++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 578899999999999999999998877777776766554
No 194
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.41 E-value=0.048 Score=58.68 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=32.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+..++++.|-||+||||+|..|+..+...+.++-.++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34589999999999999999999887767777777776
No 195
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.41 E-value=0.048 Score=56.99 Aligned_cols=41 Identities=34% Similarity=0.337 Sum_probs=34.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
++.+|.++|.+|+||||+++.|+..+...+.++.+++.|-+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 56788888999999999999999998877878877766543
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.38 E-value=0.074 Score=56.79 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
+.-|+|+|-||+|||++|++|++.++ .....++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~---~~~~~v~~~ 118 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSS 118 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEEEHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC---CCEEEeeHH
Confidence 34578899999999999999999874 344445443
No 197
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.32 E-value=0.18 Score=55.41 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=66.0
Q ss_pred hcccCCCCCCcEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechh----hH-HHh---hCCCCCCCCCCCCCHHH
Q 005233 341 DQMLGPKEHRHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGK----YR-RLK---HGVNQSADFFRADNPEG 411 (707)
Q Consensus 341 ~~~~~~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~dd----yR-r~~---~g~~~~~~f~~~~~e~~ 411 (707)
|.+.+... +.-+++++|-||+||||+|..++..... .+.++-.|+... .. |.. .+.....-....-....
T Consensus 191 D~~lgGl~-~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~ 269 (444)
T 2q6t_A 191 DQLIGTLG-PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRD 269 (444)
T ss_dssp HHHHCCCC-TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHH
T ss_pred hhhcCCcC-CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHH
Confidence 44344333 3558999999999999999999987764 366777776642 22 211 12211110001112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEEE
Q 005233 412 MEARNEVAALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLET 467 (707)
Q Consensus 412 ~~~~~~vA~~~l~d~~~~L~~~G~vVIlDAtn~~~-e~R~~l~~l-~~~~~~vifIE~ 467 (707)
+..+...+ ..+. .....|.|....+. +-+..++.+ .++++.+++|+.
T Consensus 270 ~~~~~~a~--------~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 270 FSRLVDVA--------SRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHH--------HHHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHH--------HHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 22222221 1232 34567767655554 457777777 667899999974
No 198
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.078 Score=56.24 Aligned_cols=29 Identities=7% Similarity=-0.083 Sum_probs=25.7
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
..+-.++++|.||+|||++++.+++.|..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35678899999999999999999999863
No 199
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.26 E-value=0.012 Score=61.63 Aligned_cols=42 Identities=31% Similarity=0.308 Sum_probs=35.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEechhhH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVGKYR 391 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~ddyR 391 (707)
++.+|+++|.+|+||||++..|+..+.. .|.++-+++.|.+|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 4679999999999999999999999874 68788888776654
No 200
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.045 Score=60.58 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.|.=|+|.|.||+|||++|++||..+++
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999999998654
No 201
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=95.19 E-value=0.024 Score=63.84 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=67.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
..+++|||-|+-||||+|..+.|.+.|.-.|+++..+..-.++... ..|+ .....
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~------~~yl-----------~R~~~-------- 95 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELE------RPPQ-----------WRFWR-------- 95 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHT------SCTT-----------HHHHH--------
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhcc------CChh-----------hhHHH--------
Confidence 4689999999999999999999999999888887666332222211 1121 11111
Q ss_pred HHhcCCeEEEEeCCCCCH------------H-HHHHHHH-------HHcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 429 WMHEGGQVGIFDATNSSR------------K-RRNMLMK-------MAEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~------------e-~R~~l~~-------l~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
.+=..|.+||+|-..... + ..+.+.. +.+.|+.++-+-+.. +++..++|+..|..
T Consensus 96 ~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~i-s~eeq~kRl~~R~~ 170 (500)
T 3czp_A 96 RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHL-SKKQLKERLKALEK 170 (500)
T ss_dssp HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-CHHHHHHCC-----
T ss_pred hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEC-CHHHHHHHHHHHhc
Confidence 133479999999764322 2 1112222 156788777776666 47888889888754
No 202
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.17 E-value=0.07 Score=54.24 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+.-++++|-||+||||+|++|++.++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 44588999999999999999998854
No 203
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.17 E-value=0.039 Score=56.39 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=28.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+.-++++|-||+|||++|+.|++.++ .....++..++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~---~~~~~i~~~~~ 86 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN---APFIKVEATKF 86 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---CCEEEEcchhc
Confidence 44678999999999999999999874 34455555443
No 204
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.11 E-value=0.15 Score=53.76 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=27.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEe
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFN 386 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~ 386 (707)
.++++|.||+||||+++.+++.+... +.....++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 78899999999999999999988655 45555555
No 205
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.11 E-value=0.16 Score=53.22 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=31.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
..-+++++|-||+||||+|..++......+.++-.|+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 45699999999999999999999877666656666654
No 206
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.04 E-value=0.13 Score=52.05 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=24.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
..+.-++++|-||+|||++|++|++.++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3566899999999999999999999854
No 207
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.04 E-value=0.018 Score=53.93 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=29.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
.-.++++|-+|+||||+++.|+..+...|.+...++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 3468889999999999999999988765655555544
No 208
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.03 E-value=0.026 Score=60.38 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+.-|+|+|.||+|||++|+.|++.++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999999874
No 209
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.02 E-value=0.017 Score=60.82 Aligned_cols=39 Identities=33% Similarity=0.445 Sum_probs=31.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
++.+|.++|.+||||||+++.|+..+...+-++.+...|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 567999999999999999999999987666555555443
No 210
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.99 E-value=0.06 Score=55.18 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.+.-|+++|-||+||||+|+.|++.++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 355789999999999999999998864
No 211
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.92 E-value=0.025 Score=60.50 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=34.8
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.+..+|+++|.||+||||++..|+..+...|.++-+++.|
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3567899999999999999999999988778888777665
No 212
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=94.90 E-value=0.017 Score=61.02 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=67.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMISW 429 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~~ 429 (707)
.+++|+|-|.-||||+|..+.|.++|...|+++..+..-..+... ..|+ ..+. ..
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~------~~yl-----------~R~~--------~~ 139 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERG------QWYF-----------QRYV--------AT 139 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHT------SCTT-----------HHHH--------TT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHh------chHH-----------HHHH--------Hh
Confidence 589999999999999999999999999888877665221111100 0111 0111 11
Q ss_pred HhcCCeEEEEeCCCCCHH-------------HHHHHHHH-------HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 430 MHEGGQVGIFDATNSSRK-------------RRNMLMKM-------AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 430 L~~~G~vVIlDAtn~~~e-------------~R~~l~~l-------~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
|-..|.+||+|-.....- ..+.+..+ ...|+.++-+.+.. +++...+|+..|..
T Consensus 140 LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~I-s~eeq~kR~~~R~~ 213 (304)
T 3czq_A 140 FPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINI-GREMQLKRFHDRRH 213 (304)
T ss_dssp CCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEC-CHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEEC-CHHHHHHHHHHhhc
Confidence 224699999997653221 11222222 33577666665566 47788888877643
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.049 Score=59.71 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
|.=|+|.|.||+|||.+|++||..++..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 4458999999999999999999986543
No 214
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.82 E-value=0.082 Score=56.39 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
+-++++.|.||+||||+|.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 346789999999999999999876
No 215
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=94.82 E-value=0.02 Score=59.94 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=70.2
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
..++||+|-|.-|+||.++.+.|.+.|.-.|+++.-+..-..+... ..|+ .....
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~------~~yl-----------wR~~~-------- 127 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKS------HDFL-----------WRIEK-------- 127 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHT------SCTT-----------HHHHT--------
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhc------CCHH-----------HHHHH--------
Confidence 4699999999999999999999999999888777665221111100 1111 01111
Q ss_pred HHhcCCeEEEEeCCCCCHH-------------HHHHH---HHH----HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 429 WMHEGGQVGIFDATNSSRK-------------RRNML---MKM----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~e-------------~R~~l---~~l----~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
.|=..|.++|+|-....+- ....+ ..+ ...|+.++-+-+.. +.+..++|++.|..
T Consensus 128 ~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhI-skeEQ~kR~~~R~~ 202 (289)
T 3rhf_A 128 QVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNI-SKDEQKKRLIARLD 202 (289)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEC-CHHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEC-CHHHHHHHHHHHhc
Confidence 1234699999998755431 11222 222 46787776666666 47888889988865
No 216
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.80 E-value=0.022 Score=59.94 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=31.8
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
..+.+|.|+|..||||||+.+.|+..+...+-+..+...|
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d 137 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 137 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 3578999999999999999999999887655555544433
No 217
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.73 E-value=0.022 Score=57.29 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=25.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
.+.+|.++|-+||||||+++.|+..++..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 46799999999999999999999987654
No 218
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.71 E-value=0.3 Score=54.00 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=32.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
+.-++++.|-||+||||+|..++......|.++-+|+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 456999999999999999999998876667777777653
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.061 Score=59.54 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.|.=|+|.|.||+|||++|++||..++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3567899999999999999999998654
No 220
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.64 E-value=0.024 Score=61.15 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=32.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.++.+|.|+|..||||||+++.|+..+...+-+..+...|
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D 194 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 194 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccc
Confidence 3678999999999999999999999987655555554433
No 221
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.63 E-value=0.12 Score=53.72 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=23.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.|-++++.|-||+||||+|+.|++.++
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 445789999999999999999998863
No 222
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.61 E-value=0.11 Score=54.52 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=29.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc---CCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL---GHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~---gi~tdv~~~ 387 (707)
.+..++++|.||+||||+++.+++.+... +.....++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 45578999999999999999999987544 455555654
No 223
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=94.60 E-value=0.077 Score=56.01 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=47.6
Q ss_pred EEEeccccccccCCC---Cc------CCCCCCCHHHHHHHHHHHHHHHHHhcCCC-------CCEEEEcCcHHHHHHHHH
Q 005233 562 ILLTRHGESRDNVRG---RI------GGDTILSDAGEIYAKKLANFVEKRLKSER-------AASIWTSTLQRTILTASP 625 (707)
Q Consensus 562 IyLIRHGes~~N~~~---~~------~GD~pLTe~G~~QA~~Lg~~L~~~l~~~~-------~d~I~TSPl~RAiQTA~~ 625 (707)
.+|.|||...-.... .+ .|...||+.|.+|...+|++|+++....- --.|+++...||++||+.
T Consensus 7 ~vl~RHG~R~P~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~ll~~~~~~~~v~vrst~~~Rt~~SA~~ 86 (354)
T 1nd6_A 7 TLVFRHGDRSPIDTFPTDPIKESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMT 86 (354)
T ss_dssp EEEEECCCBCCSCCCTTCSCCGGGSTTCTTCBCHHHHHHHHHHHHHHHHHTTTTTCSSCCGGGEEEEEESCHHHHHHHHH
T ss_pred EEEecCCCCCCccccCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhccccCcCeEEEEECCchHHHHHHHH
Confidence 567899987432210 00 11347999999999999999998854321 125889999999999999
Q ss_pred h
Q 005233 626 I 626 (707)
Q Consensus 626 i 626 (707)
+
T Consensus 87 f 87 (354)
T 1nd6_A 87 N 87 (354)
T ss_dssp H
T ss_pred H
Confidence 8
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.067 Score=59.04 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=24.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.|.=|+|.|.||+|||++|++||..++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3556999999999999999999998654
No 225
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.57 E-value=0.095 Score=56.16 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=31.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
+.-++++.|-||+||||+|..++..+...+..+-.++.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 345899999999999999999998776666666666553
No 226
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.56 E-value=0.26 Score=53.00 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=31.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
+.-++.+.|-||+|||||+..++..+...+.++-.++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 456899999999999999999998887666666556553
No 227
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.56 E-value=0.18 Score=54.49 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=30.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.-++++.|-||+||||+|..++..+...+..+-.++.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 44778899999999999999998876666677777654
No 228
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.52 E-value=0.033 Score=53.87 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=29.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
.+|+++|.+||||||+.+.|.+.+...+.++-++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i 40 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence 4789999999999999999999887777666555
No 229
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.46 E-value=0.095 Score=53.81 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=22.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
++++|.||+||||+|+.+++.+..
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999998753
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.071 Score=58.90 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.|.=|+|.|.||+|||.+|++||..++.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 3556999999999999999999998654
No 231
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.39 E-value=0.13 Score=54.82 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=27.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
.+.-|+|+|-||+|||++|++|++.++ .....++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG---ATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT---CEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC---CeEEEEeh
Confidence 455789999999999999999998853 44444544
No 232
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.36 E-value=0.11 Score=55.93 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.+.-|+|+|-||+|||++|++|++.++
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 345789999999999999999998854
No 233
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.33 E-value=0.071 Score=56.12 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=22.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
++|+|-||+||||+|+.|++.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 789999999999999999999754
No 234
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.31 E-value=0.044 Score=61.65 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=71.8
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQSADFFRADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~~~f~~~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
..+++|||-|.-||||++..+.|.+.|.-.|+++..+..-.++... ..|+ .....
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~------~~yl-----------~R~~~-------- 352 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERA------QPYL-----------WRFWR-------- 352 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHT------SCTT-----------HHHHT--------
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhc------chHH-----------HHHHH--------
Confidence 3689999999999999999999999999888887766332222211 1122 01111
Q ss_pred HHhcCCeEEEEeCCCCCH------------H-HHHHHHH---H----HcCCceEEEEEEEeCCHHHHHHHHHHhhh
Q 005233 429 WMHEGGQVGIFDATNSSR------------K-RRNMLMK---M----AEGNCKIIFLETICNDRDIIERNIRLKIQ 484 (707)
Q Consensus 429 ~L~~~G~vVIlDAtn~~~------------e-~R~~l~~---l----~~~~~~vifIE~~c~d~e~i~~rI~~r~~ 484 (707)
.+=..|.++|+|-..... + ....+.. + ...|+.++-+-+.. +++..++|+..|..
T Consensus 353 ~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~i-s~eeQ~~R~~~R~~ 427 (500)
T 3czp_A 353 HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAI-DKQTQMERFKEREK 427 (500)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEC-CHHHHHHHHHHHHH
T ss_pred hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEEC-CHHHHHHHHHHHhc
Confidence 122469999999875432 2 1212222 2 45677776666666 57888999988865
No 235
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.25 E-value=0.032 Score=60.20 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
...|+|+|.||+||||+++.|++.|++.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4568899999999999999999998754
No 236
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.21 E-value=0.049 Score=55.93 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=29.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
..++|+|-||+||||+|+.|++.+...+.....++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 4789999999999999999999987655555556543
No 237
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.20 E-value=0.08 Score=58.98 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.|.=|+|.|.||+|||++|++||..++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 4567899999999999999999998664
No 238
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.14 E-value=0.026 Score=56.77 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.-|+++|.||+||||+|+.|+..++
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3488999999999999999998864
No 239
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.11 E-value=0.13 Score=54.01 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=29.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc------CCceEEEechh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL------GHDTKHFNVGK 389 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~------gi~tdv~~~dd 389 (707)
..-+++++|-||+||||+|..|+...... +..+-.++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 34589999999999999999999764322 44555666543
No 240
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.10 E-value=0.19 Score=51.70 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=29.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~ 387 (707)
..-+++++|-||+||||+++.|+..+... |..+.+++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34589999999999999999999887644 545555554
No 241
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.06 E-value=0.11 Score=57.73 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+.-|+|+|.||+||||+|+.|++.++.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 345899999999999999999998754
No 242
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.02 E-value=0.25 Score=54.51 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=59.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh-cCCceEEEech----hhHHHh----hCCCCCCCCC-CCCCHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW-LGHDTKHFNVG----KYRRLK----HGVNQSADFF-RADNPEGMEARNEVA 419 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~-~gi~tdv~~~d----dyRr~~----~g~~~~~~f~-~~~~e~~~~~~~~vA 419 (707)
+.-++++.|-||+||||++..|+..+.. .|..+-+++.. ..++++ .+.... .+. ..-....+..+.+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~-~l~~g~l~~~~~~~~~~-- 278 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQ-NLRTGKLTPEDWGKLTM-- 278 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHH-HHHTSCCCHHHHHHHHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHH-HHhcCCCCHHHHHHHHH--
Confidence 3558999999999999999999988764 46677777653 111111 111100 000 0011211211111
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH-HcCCceEEEEE
Q 005233 420 ALAMEDMISWMHEGGQVGIFDATNSSR-KRRNMLMKM-AEGNCKIIFLE 466 (707)
Q Consensus 420 ~~~l~d~~~~L~~~G~vVIlDAtn~~~-e~R~~l~~l-~~~~~~vifIE 466 (707)
....+. .....|.|....+. +.+..++.+ .+++..+++|+
T Consensus 279 ------a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID 320 (454)
T 2r6a_A 279 ------AMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVID 320 (454)
T ss_dssp ------HHHHHH-SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred ------HHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 112232 34566666544454 456677777 56788899987
No 243
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.00 E-value=0.059 Score=55.30 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
++++|-||+||||+|+.+++.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999998753
No 244
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.97 E-value=0.048 Score=52.87 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=27.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
..+++++|-||+||||++.+++..+...+.++-++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45899999999999999988877766566666554
No 245
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.90 E-value=0.065 Score=54.29 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=35.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
.+++-|++.|-||+||||+|-.++..+...|.++.+.+.|.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 35678999999999999999999999998899988887754
No 246
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.84 E-value=0.031 Score=51.58 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=24.0
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceE
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTK 383 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~td 383 (707)
|++.|-||+|||++|+.|++.....+....
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 789999999999999999987654444443
No 247
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.83 E-value=0.015 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
-|+++|.+|+||||+..+|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998753
No 248
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.82 E-value=0.14 Score=49.45 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.....-|+++|.+|+|||||..+|....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456679999999999999999998653
No 249
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.80 E-value=0.041 Score=58.07 Aligned_cols=41 Identities=22% Similarity=0.118 Sum_probs=30.7
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhc-C-CceEEEechh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWL-G-HDTKHFNVGK 389 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-g-i~tdv~~~dd 389 (707)
.++.+|.++|.+||||||+++.|+..+... | .++-++.-+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 467899999999999999999999888632 2 2344444443
No 250
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.79 E-value=0.039 Score=53.13 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=24.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+.+++++|-||+||||+++.+++.+..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 348899999999999999999998764
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.74 E-value=0.053 Score=56.91 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=34.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEechhhH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNVGKYR 391 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~ddyR 391 (707)
+.-++|.|-||+|||++|++|+..+. ..+.++..++..++-
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 34688999999999999999999998 888888777765553
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.72 E-value=0.28 Score=52.12 Aligned_cols=39 Identities=15% Similarity=0.029 Sum_probs=29.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh------cCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW------LGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~------~gi~tdv~~~d 388 (707)
..-+++++|-||+||||+|..|+..... .+..+-.++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 4669999999999999999999976322 34455556553
No 253
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.70 E-value=0.24 Score=54.75 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.-++|+|-||+||||+|+.|++.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3689999999999999999999864
No 254
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.67 E-value=0.21 Score=54.57 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..-++.++|-||+|||||++.|+-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4558999999999999999988744
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.67 E-value=0.06 Score=52.31 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=29.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
.-+++++|-||+||||+++.|+..+...+.++..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4588899999999999999999776555556666654
No 256
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.58 E-value=0.12 Score=57.57 Aligned_cols=39 Identities=5% Similarity=-0.161 Sum_probs=32.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~d 388 (707)
..-++++.|-||+||||+|..++..+... +.++-.++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 45689999999999999999999887655 7777777664
No 257
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.45 E-value=0.035 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+.+++++|.+|||||||.+.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45789999999999999999998763
No 258
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.43 E-value=0.039 Score=57.39 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+..|+|+|-||+||||+|++|+..++
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45789999999999999999998864
No 259
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.41 E-value=0.082 Score=51.42 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=26.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+...|+++|.+|+||||+...|...+... .+.-++
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i 63 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAM 63 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE
Confidence 45689999999999999999999876533 344344
No 260
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.38 E-value=0.047 Score=52.73 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.+.++|-+||||||+.+.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998875
No 261
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=93.33 E-value=0.24 Score=54.09 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=48.1
Q ss_pred eEEEeccccccc-cC--------C-C---Cc-CCCCCCCHHHHHHHHHHHHHHHHHh--cC-------C--CCCEEEEcC
Q 005233 561 PILLTRHGESRD-NV--------R-G---RI-GGDTILSDAGEIYAKKLANFVEKRL--KS-------E--RAASIWTST 615 (707)
Q Consensus 561 ~IyLIRHGes~~-N~--------~-~---~~-~GD~pLTe~G~~QA~~Lg~~L~~~l--~~-------~--~~d~I~TSP 615 (707)
-++|.|||...- .. . . .+ .|...||+.|.+|...+|.+|+++. .+ . ..-.|+++.
T Consensus 10 V~vl~RHG~R~P~~~~~~~~~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~~v~vrst~ 89 (398)
T 3ntl_A 10 VLIMSRANLRAPLANNGSVLEQSTPKQWPEWEVPGGQLTTKGGVLEVYMGHYMREWLAQQGMVKTGECPAADSVYAYANS 89 (398)
T ss_dssp EEEEEECCSBCCCGGGHHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCTTSCCCTTSEEEEECS
T ss_pred EEEEecCCCCCCCCCCcccccCCCCcccccCCCCccccchHHHHHHHHHHHHHHHHHhhcCCCccccCCCcCeEEEEECC
Confidence 367889997642 10 0 0 11 2356799999999999999999886 21 1 123688999
Q ss_pred cHHHHHHHHHh
Q 005233 616 LQRTILTASPI 626 (707)
Q Consensus 616 l~RAiQTA~~i 626 (707)
..||++||+.+
T Consensus 90 ~~Rt~~SA~~f 100 (398)
T 3ntl_A 90 LQRTVATAQFF 100 (398)
T ss_dssp SHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99999999998
No 262
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.33 E-value=0.19 Score=48.05 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=32.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
.+.++.+-.|+||||+|..|+..|...|.++-+++.|.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45555688999999999999999999999999998863
No 263
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.32 E-value=0.055 Score=54.67 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=29.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
-|+++|-||+|||++|+.|++.+...+.....++...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 4778999999999999999998765555566666543
No 264
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.31 E-value=0.095 Score=55.99 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=31.9
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
.....+|.++|.||+||||+-..|...+...+.+.-++..
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 3457799999999999999999999887666666655543
No 265
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.26 E-value=0.061 Score=53.11 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
+++++++|.||||||++|..+...+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5689999999999999998875443
No 266
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.24 E-value=0.066 Score=52.73 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=30.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.-+++++|-||+||||+|.+++..+...+..+..++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45899999999999999999987765556666666553
No 267
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.23 E-value=0.038 Score=58.82 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=26.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+.-|+|+|-||+|||++|+.|++.++ .....++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~---~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD---VPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEech
Confidence 44688899999999999999999864 34444444
No 268
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=93.21 E-value=0.23 Score=52.88 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=47.9
Q ss_pred eEEEeccccccccCC--C----CcCCCCCCCHHHHHHHHHHHHHHHHHh---cCC-------CCCEEEEcCcHHHHHHHH
Q 005233 561 PILLTRHGESRDNVR--G----RIGGDTILSDAGEIYAKKLANFVEKRL---KSE-------RAASIWTSTLQRTILTAS 624 (707)
Q Consensus 561 ~IyLIRHGes~~N~~--~----~~~GD~pLTe~G~~QA~~Lg~~L~~~l---~~~-------~~d~I~TSPl~RAiQTA~ 624 (707)
-+.+.|||...-... . ...|...||+.|.+|...+|++|+++. .+. .--.|+++...||++||+
T Consensus 11 v~v~~RHG~R~p~~~~p~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~~Yv~~~~~l~~~~~~~~v~~rst~~~Rt~~Sa~ 90 (342)
T 3it3_A 11 VSMITRHGDRAPFANIENANYSWGTELSELTPIGMNQEYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQ 90 (342)
T ss_dssp EEEEEECCCBCCSSCCTTCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHTTTSCSSCSSCCTTSEEEEECSSHHHHHHHH
T ss_pred EEEEEeCCCCCCcccCCCCcccCCCChHhhhHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEECCChHHHHHHH
Confidence 367889998643211 0 011245799999999999999999886 221 122678999999999999
Q ss_pred Hh
Q 005233 625 PI 626 (707)
Q Consensus 625 ~i 626 (707)
.+
T Consensus 91 ~~ 92 (342)
T 3it3_A 91 SL 92 (342)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 269
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.16 E-value=0.25 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-|+++|-||+|||++|+.|++.++
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 479999999999999999998854
No 270
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.15 E-value=0.044 Score=56.50 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++|+|.||+||||+++.|+..++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 89999999999999999998754
No 271
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.14 E-value=0.092 Score=52.88 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=32.6
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (707)
.+..+++++|-||+||||++..++..+...+.++-++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 35679999999999999999999988887788888774
No 272
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.12 E-value=0.045 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++++|-||+||||+++.|+..+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998764
No 273
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.01 E-value=0.23 Score=49.82 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.++-|+++|.||+|||||...|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999888743
No 274
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.01 E-value=0.096 Score=54.20 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=33.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
+..+|.++|-.|+||||+|..|+..|...|.++-+++.|
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 445665669999999999999999999999999999886
No 275
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.86 E-value=0.032 Score=56.30 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.9
Q ss_pred EEEEccCCCChHHHHHHHHHHHhh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
|+++|-||+|||++|++|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 789999999999999999998754
No 276
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.86 E-value=0.055 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++|.++|.+||||||+|+.|.++++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g 26 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS 26 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999998744
No 277
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.86 E-value=0.28 Score=54.85 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=26.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
-|+|+|.||+||||+|++|+..++ .....++..+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~---~~f~~is~~~ 84 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSD 84 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC---CCeeeCCHHH
Confidence 388999999999999999998754 4444454433
No 278
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.83 E-value=0.13 Score=54.16 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=36.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+.++++.|-.|.||||+|..|+..+...|.++-+++.|-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 689999999999999999999999998999999998864
No 279
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.82 E-value=0.1 Score=55.35 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=32.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.+..+|.++|.||+||||+...|+..+...+.++-+++.|
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 3567888999999999999999999887777777666543
No 280
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.81 E-value=0.055 Score=52.12 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=27.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
+|.++|-+|||||||++.|.+.+...+++.-.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 789999999999999999999988666554444
No 281
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.81 E-value=0.041 Score=54.85 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.4
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.++.+|.+.|..||||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999999875
No 282
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.78 E-value=0.79 Score=48.55 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=23.9
Q ss_pred CcEEEEE--EccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVL--VGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvl--vGLPGSGKSTlAr~Lar~L~~ 377 (707)
.+-++++ +|.||+||||+++.+++.+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 3557777 999999999999999988754
No 283
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.66 E-value=0.059 Score=56.91 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.5
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-.++++|.||+||||+|+.|+..++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4688999999999999999999864
No 284
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.60 E-value=0.044 Score=54.60 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
....|+++|-+|+||||+|..|+++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 356899999999999999999998754
No 285
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.58 E-value=0.13 Score=55.01 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=37.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
..+.++++.|-.|.||||+|..||..|...|.++-+++.|-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45778999999999999999999999998999999998865
No 286
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.55 E-value=0.11 Score=61.59 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=28.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
..|.=|+|.|.||+|||++|++|+..++ .....++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg---~~~~~v~~ 271 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG---AFFFLING 271 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT---CEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC---CeEEEEEh
Confidence 3567799999999999999999998754 44455554
No 287
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=92.49 E-value=0.19 Score=43.87 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=41.7
Q ss_pred eEEEEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeEEEEEeCCCCCceeeeEEE
Q 005233 30 QFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (707)
Q Consensus 30 ~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~ls~~~~~~~~~leyKf~l 95 (707)
..-|.| +-+| ....+.|.|+-. +|+ .++|.+. .+.|++.+.+++- .-+|||+|
T Consensus 10 ~~~v~F-~wap---~a~~V~v~GdFn---~W~---~~~m~~~-~g~w~~~v~l~~G--~~~YKf~V 62 (96)
T 1z0n_A 10 ARPTVF-RWTG---GGKEVYLSGSFN---NWS---KLPMTRS-QNNFVAILDLPEG--EHQYKFFV 62 (96)
T ss_dssp CEEEEE-EECS---CCSCEEEEEGGG---TTC---CEECEEE-TTEEEEEEEECSE--EEEEEEEE
T ss_pred ceEEEE-EECC---CCcEEEEEEEeC---CCc---cccCEEC-CCEEEEEEEccCC--CEEEEEEE
Confidence 355777 6667 356889999876 899 6889986 4899999988764 46899999
No 288
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.44 E-value=0.14 Score=50.10 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=32.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (707)
+..+++++|-|||||||.+-.++.++...+.++-++.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4579999999999999999999988877788888874
No 289
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=92.38 E-value=0.24 Score=53.91 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=47.4
Q ss_pred eEEEeccccccccCCC------------Cc-CCCCCCCHHHHHHHHHHHHHHHHHhc--C-----C----CCCEEEEcCc
Q 005233 561 PILLTRHGESRDNVRG------------RI-GGDTILSDAGEIYAKKLANFVEKRLK--S-----E----RAASIWTSTL 616 (707)
Q Consensus 561 ~IyLIRHGes~~N~~~------------~~-~GD~pLTe~G~~QA~~Lg~~L~~~l~--~-----~----~~d~I~TSPl 616 (707)
-.+|.|||...=.... .+ .+.--||..|.+|...+|++|++++. + . .--.|+++..
T Consensus 11 v~vl~RHG~R~P~~~~~~~~~~~~~~w~~w~~~~g~LT~~G~~~~~~lG~~lr~ry~~~~ll~~~~~p~~~~v~v~st~~ 90 (410)
T 1dkq_A 11 VVIVSRAGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVD 90 (410)
T ss_dssp EEEEEECCSBCCSCCCHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTTTEEEEECSS
T ss_pred EEEEecCCcCCCCCCCccccccCcccccCCCCCCCccchHHHHHHHHHHHHHHHHHHhcCCCccccCCCcceEEEEeCCc
Confidence 3567899977432111 01 11446999999999999999998862 1 1 1225899999
Q ss_pred HHHHHHHHHh
Q 005233 617 QRTILTASPI 626 (707)
Q Consensus 617 ~RAiQTA~~i 626 (707)
.||++||+.+
T Consensus 91 ~RT~~SA~~~ 100 (410)
T 1dkq_A 91 ERTRKTGEAF 100 (410)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 290
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.36 E-value=0.065 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
|+++|-||+||||+++.|+..+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 88999999999999999998764
No 291
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.31 E-value=0.24 Score=46.65 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
+..-|+++|.+|+|||||...|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999998864
No 292
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.27 E-value=0.079 Score=58.49 Aligned_cols=39 Identities=0% Similarity=-0.008 Sum_probs=25.4
Q ss_pred CCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeCC
Q 005233 433 GGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICND 471 (707)
Q Consensus 433 ~G~vVIlDAtn~~-~e~R~~l~~l~~~~~~vifIE~~c~d 471 (707)
.+-+.|+|+.... ......+..+.+.+.+++++.-.|+.
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~ 143 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDN 143 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccc
Confidence 4778889998754 44444444446678888887767753
No 293
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.25 E-value=0.15 Score=48.03 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.8
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.+.+-|+++|.+|+|||||..+|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999998873
No 294
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.23 E-value=0.073 Score=56.13 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+..++|+|-||+|||++|+.+++.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457899999999999999999999863
No 295
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.21 E-value=0.12 Score=50.87 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=27.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh-hcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR-WLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~-~~gi~tdv~~~ 387 (707)
+.-++.++|-+||||||+++.|+.... ..+-....++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 355889999999999999999985332 33444444543
No 296
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.19 E-value=0.073 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=23.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
..-++.++|-+||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999999754
No 297
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.14 E-value=0.13 Score=54.36 Aligned_cols=40 Identities=18% Similarity=0.074 Sum_probs=36.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
.+.++++.|-.|.||||+|..|+..|...|.++-+++.|-
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3568889999999999999999999999999999998864
No 298
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.12 E-value=0.065 Score=53.68 Aligned_cols=26 Identities=15% Similarity=0.461 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+-.|++.|.||+||||+|.+|++.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999999864
No 299
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.06 E-value=0.065 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
+.+++++|-+|||||||.+.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999876
No 300
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.01 E-value=0.08 Score=51.67 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=23.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
..-++.++|-+||||||+.+.|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 355899999999999999999998764
No 301
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.99 E-value=0.076 Score=58.64 Aligned_cols=36 Identities=25% Similarity=0.156 Sum_probs=27.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+.-|+|.|.||+|||++|+.|++.++.. .....++.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~-~~~~~~~~ 98 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSK-VPFCPMVG 98 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTT-SCEEEEEG
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCC-ceEEEEeH
Confidence 3458899999999999999999997632 33444443
No 302
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.97 E-value=0.21 Score=53.51 Aligned_cols=137 Identities=10% Similarity=0.069 Sum_probs=65.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhhHHHhhCCCCC-CCCCC-CCCHHHHHHHHHHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGVNQS-ADFFR-ADNPEGMEARNEVAALAMEDMIS 428 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyRr~~~g~~~~-~~f~~-~~~e~~~~~~~~vA~~~l~d~~~ 428 (707)
..+|+++|-+||||||+.+.|...+.... ....+ ++.+......... ..+.. ...... . .......+.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~-g~I~i--e~~~e~~~~~~~~~v~~v~~q~~~~~--~---~~~~t~~~~i~ 246 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQ-RLITI--EDVPELFLPDHPNHVHLFYPSEAKEE--E---NAPVTAATLLR 246 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTS-CEEEE--ESSSCCCCTTCSSEEEEECC---------------CCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCc-eEEEE--CCccccCccccCCEEEEeecCccccc--c---ccccCHHHHHH
Confidence 34899999999999999999998765322 12222 2222110000000 01111 110000 0 00000111111
Q ss_pred -HHhcCCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 005233 429 -WMHEGGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLKIQQSPDYAEEPDFEAG 498 (707)
Q Consensus 429 -~L~~~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r~~~~pd~s~~~d~e~a 498 (707)
.+.......|++..-.. +-.+.+..+ ..|....+.+....+......|+...........+. +.+..
T Consensus 247 ~~l~~~pd~~l~~e~r~~-~~~~~l~~l-~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~~~~~~~-~~~~i 314 (361)
T 2gza_A 247 SCLRMKPTRILLAELRGG-EAYDFINVA-ASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQL-PYEII 314 (361)
T ss_dssp HHTTSCCSEEEESCCCST-HHHHHHHHH-HTTCCSCEEEEECSSHHHHHHHHHHHHTTSTTGGGS-CHHHH
T ss_pred HHHhcCCCEEEEcCchHH-HHHHHHHHH-hcCCCeEEEEECCCCHHHHHHHHHHHHhccccccCC-CHHHH
Confidence 13334556777776543 333444444 334555577778888888888887765433222333 44444
No 303
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.93 E-value=0.17 Score=49.36 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=23.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+...|+++|.+|+||||+...|...+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4567888899999999999999987643
No 304
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.80 E-value=0.13 Score=57.04 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-++|+|-||+|||++|+.|++.+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4589999999999999999999753
No 305
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.66 E-value=0.36 Score=49.08 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
+.+-|+++|.||+|||||..+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 456799999999999999999974
No 306
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.57 E-value=0.14 Score=48.06 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.++.-|+++|.+|+|||||.+.|..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999975
No 307
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.51 E-value=0.08 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
+.-++.++|-||+||||+++.|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4558999999999999999999975
No 308
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.46 E-value=0.17 Score=53.79 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=35.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
+.++++.|-.|.||||+|..|+..|...|.++-+++.|
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 56889999999999999999999999999999999887
No 309
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=91.41 E-value=0.33 Score=52.96 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=46.8
Q ss_pred EEEeccccccccCC----------C---CcC-CCCCCCHHHHHHHHHHHHHHHHHhc--CC------C--CCEEEEcCcH
Q 005233 562 ILLTRHGESRDNVR----------G---RIG-GDTILSDAGEIYAKKLANFVEKRLK--SE------R--AASIWTSTLQ 617 (707)
Q Consensus 562 IyLIRHGes~~N~~----------~---~~~-GD~pLTe~G~~QA~~Lg~~L~~~l~--~~------~--~d~I~TSPl~ 617 (707)
.+|.|||...-... . .+. +...||+.|.+|...+|++|+++.. +. . --.|+++...
T Consensus 20 ~~~~RHG~R~P~~~~~~~l~~~~~~~~~~w~~~~g~LT~~G~~q~~~lG~~lr~rY~~~~ll~~~~~~~~~v~~rst~~~ 99 (418)
T 2wnh_A 20 VELSRHGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQ 99 (418)
T ss_dssp EEEEECCCCCCCHHHHHHHHHHHTSCCCCCSSCTTSCCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCTTTEEEEECSSH
T ss_pred EEEEeCCCCCCCCCcchhHHhcCccccccCCCCcCccChhHHHHHHHHHHHHHHHHHhcCCcccCCCCCCeEEEEECCCH
Confidence 56789997743210 0 011 2456999999999999999988754 21 1 1248899999
Q ss_pred HHHHHHHHh
Q 005233 618 RTILTASPI 626 (707)
Q Consensus 618 RAiQTA~~i 626 (707)
||++||+.+
T Consensus 100 Rt~~Sa~~f 108 (418)
T 2wnh_A 100 RTRATAQAL 108 (418)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999998
No 310
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.30 E-value=1.1 Score=41.59 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=20.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
...-|+++|.+|+|||||...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999888643
No 311
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.29 E-value=0.11 Score=56.27 Aligned_cols=27 Identities=26% Similarity=0.177 Sum_probs=23.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.+.+|+++|.||+||||+++.|+..+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 345899999999999999999998754
No 312
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.29 E-value=0.11 Score=54.17 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++++|.||+||||+|+.|++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999875
No 313
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.27 E-value=0.11 Score=58.18 Aligned_cols=34 Identities=32% Similarity=0.293 Sum_probs=27.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+..++|+|.||+||||+|+.|++.++ .....++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~---~~~i~in~ 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC---CCEEEEeC
Confidence 45889999999999999999999874 44444544
No 314
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.25 E-value=0.21 Score=53.07 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=30.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+..++.++|.||+||||+.+.|...+...+-+..+...
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 46789999999999999999999887655555555543
No 315
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.10 E-value=0.21 Score=49.18 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=26.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH-hhcCCceEEEe
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL-RWLGHDTKHFN 386 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L-~~~gi~tdv~~ 386 (707)
..-+++++|-||+|||++|.+++... ...+..+-.++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 35589999999999999999987543 23344555553
No 316
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.07 E-value=0.11 Score=50.63 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=24.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCce
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDT 382 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~t 382 (707)
+|.++|.+|+||||+.+.|+..+...|+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~ 32 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCEEE
Confidence 588999999999999999998875334333
No 317
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.05 E-value=0.5 Score=55.32 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=28.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
-++|+|-||+|||++|+.|++.++ .....++..+|
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~---~~~~~i~~s~~ 524 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG---IELLRFDMSEY 524 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT---CEEEEEEGGGC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc---CCEEEEechhh
Confidence 689999999999999999999873 45556666555
No 318
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.83 E-value=0.075 Score=55.43 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.6
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
|+|+|-||+|||++|+.|++.+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999875
No 319
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.80 E-value=0.059 Score=49.64 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
|+++|-||+|||++|+.|++...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 77899999999999999987643
No 320
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.79 E-value=0.14 Score=50.43 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=31.8
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
|.+.|-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 344899999999999999999999999999998764
No 321
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.77 E-value=0.11 Score=53.77 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
..++++|-||+|||++|+.+++.++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588899999999999999999864
No 322
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.71 E-value=0.21 Score=58.56 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=34.0
Q ss_pred CCcE-EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 349 HRHL-AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 349 ~~~~-lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
.+|. -++|+|-||+|||++|+.|++.+...+.....++..+|
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 3454 68999999999999999999998665666777777666
No 323
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=90.61 E-value=0.46 Score=53.18 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=28.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+.-|+|+|-||+|||++|++|+..+ +.....++..++
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l 274 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence 4458899999999999999999885 344555655444
No 324
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.57 E-value=0.28 Score=48.38 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=34.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc-CCceEEEechhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL-GHDTKHFNVGKY 390 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~-gi~tdv~~~ddy 390 (707)
.+.+.+..+-.|+||||+|..|+..|... |.++-+++.|-.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 35566777889999999999999999988 999999988643
No 325
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.53 E-value=0.087 Score=55.00 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
-++|+|-||+|||++|+.|++.++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4888999999999999999998653
No 326
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=90.52 E-value=0.43 Score=48.84 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
++-|+++|.||+|||||-.+|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999999999999999643
No 327
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=90.48 E-value=0.24 Score=53.06 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=36.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEechh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVGK 389 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~dd 389 (707)
.+.++++.|-.|.||||+|..|+..|. ..|.++-+++.|-
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 467889999999999999999999999 8999999998864
No 328
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.41 E-value=0.2 Score=51.38 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
..-+++++|-+||||||+.+.|...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 45689999999999999999999887643
No 329
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.41 E-value=0.21 Score=50.42 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=34.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
.+.+.+..+-.|+||||+|..|+..|. .|.++-+++.|-.
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 355666679999999999999999999 8999999988643
No 330
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.39 E-value=0.15 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
+-++.++|.+|||||||++.|+..+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4589999999999999999999886
No 331
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.37 E-value=0.19 Score=47.63 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
..-++.++|-.||||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999886
No 332
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.35 E-value=0.16 Score=52.54 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=25.4
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
.++-.|+|.|.||+|||++|.+|+..+...|
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~G 132 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFYG 132 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 3455799999999999999999998754433
No 333
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=90.35 E-value=0.25 Score=48.51 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=33.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+.+.+..+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 456666788999999999999999998899999998764
No 334
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.34 E-value=0.26 Score=50.37 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=32.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+|.+.|-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4444799999999999999999998899999998863
No 335
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.23 E-value=0.28 Score=49.33 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=32.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+|.+.|-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 4444799999999999999999998899999998763
No 336
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=90.17 E-value=0.31 Score=49.23 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=35.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
.+.+.++.+-.|+||||+|..|+..|...|.++-+++.|-.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~ 58 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFL 58 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45667777899999999999999999988999999887644
No 337
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.16 E-value=0.21 Score=52.21 Aligned_cols=26 Identities=19% Similarity=0.177 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.|. ++++|-||+||||+++.|++.+.
T Consensus 36 ~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 36 LPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 344 88999999999999999999763
No 338
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.10 E-value=0.16 Score=57.57 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
.+..++|+|-||+||||+|+.|+..+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 355899999999999999999999875
No 339
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.97 E-value=0.21 Score=46.51 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.2
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
....+=|+++|.+|+|||||...|..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhc
Confidence 34567799999999999999999875
No 340
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.97 E-value=0.31 Score=47.71 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=31.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
.+.+..+-.|+||||+|..|+..|...| ++-+++.|-
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDP 38 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence 4556678999999999999999999899 998887763
No 341
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.93 E-value=0.24 Score=45.26 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=21.6
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.+++-|+++|.+|+|||||...|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999864
No 342
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.92 E-value=0.18 Score=52.87 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=24.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+-.++++|-||+||||+|+.+++.+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 347899999999999999999999864
No 343
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.80 E-value=0.15 Score=56.10 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
+.-|+|+|.||+|||++|++|+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999986
No 344
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.69 E-value=0.29 Score=52.40 Aligned_cols=39 Identities=18% Similarity=0.051 Sum_probs=35.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh--hcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR--WLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~--~~gi~tdv~~~d 388 (707)
.+.++++.|-.|.||||+|..|+..+. ..|.++-+++.|
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 346888999999999999999999999 889999999886
No 345
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=89.68 E-value=0.62 Score=48.62 Aligned_cols=71 Identities=13% Similarity=0.250 Sum_probs=55.3
Q ss_pred CCeEEEEEEEeecccCCCceeEEecCCCccCCCCccccccccccc-CCeeEEEEEeCCCCCceeeeEEEeeCCCCCceEe
Q 005233 28 GGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRES-ASMWELSFVVPPNHETLDFKFLLKPKYGNGPCIV 106 (707)
Q Consensus 28 ~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~-~~~W~ls~~~~~~~~~leyKf~l~~~~~~~~~~~ 106 (707)
....-|.|+..+| ....+.|+|+-. +|+ +.++|++.. .+.|++++.+|+ ...+|||++-. .|
T Consensus 167 ~~k~~v~f~~~~~---~~~~V~v~GsF~---~W~--~~~~l~k~~~~g~~~~~~~L~~--G~y~YkFiVDG-------~w 229 (294)
T 3nme_A 167 LKRKTVTLTLKDK---GFSRVEISGLDI---GWG--QRIPLTLGKGTGFWILKRELPE--GQFEYKYIIDG-------EW 229 (294)
T ss_dssp CCCEEEEEEEECS---SCSCEEEEETTT---EEE--EEEECEECTTTCEEEEEEEECS--EEEEEEEEETT-------EE
T ss_pred cccccceeeeccC---CCCEEEEEEecc---CCC--CcccceEcCCCCEEEEEEECCC--ceEEEEEEECC-------EE
Confidence 4456789999998 456688999765 787 679999964 899999999997 46899999863 27
Q ss_pred ecCCCcccc
Q 005233 107 EEGPNRLLT 115 (707)
Q Consensus 107 E~g~NR~l~ 115 (707)
-..|+-...
T Consensus 230 ~~d~~~~~~ 238 (294)
T 3nme_A 230 THNEAEPFI 238 (294)
T ss_dssp ECCTTSCEE
T ss_pred eeCCCCCee
Confidence 777775543
No 346
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.67 E-value=0.47 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
-+|+++|-+||||||+.+.|...+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 389999999999999999999888654
No 347
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.66 E-value=0.23 Score=45.76 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=22.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
...+-|+++|.+|+|||||..+|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34677999999999999999998754
No 348
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.66 E-value=0.48 Score=47.48 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=33.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (707)
.+..+.+.+|-|||||||.+-.++..+...+.++.++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34679999999999999999999988887888888874
No 349
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=89.62 E-value=1.3 Score=46.18 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
...|+++|.||+|||||..+|..
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34699999999999999998874
No 350
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.62 E-value=2 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.+-.|.++|.||+|||||..+|..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 466899999999999999988863
No 351
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.61 E-value=0.47 Score=45.82 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
...-|+++|.+|+|||||...|...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3557889999999999999888643
No 352
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.61 E-value=0.31 Score=48.51 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=34.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+.+.+..+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456666788999999999999999999999999988764
No 353
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=89.54 E-value=0.36 Score=48.33 Aligned_cols=39 Identities=31% Similarity=0.297 Sum_probs=33.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+.+.++.+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456677889999999999999999998899999988764
No 354
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.54 E-value=0.41 Score=49.68 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=35.4
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
..+.+.+..+-+|.||||+|..||..|...|.++-+++.|-.
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 346666777889999999999999999988999999987643
No 355
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=89.53 E-value=0.12 Score=55.11 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=26.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
+++.|++-|.-|+||||+++.|+++|...
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 56899999999999999999999998864
No 356
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.45 E-value=0.74 Score=58.76 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=33.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.++-+|++.|-||+||||+|..++..+...+.++-.++..
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 3566999999999999999999998887777777777664
No 357
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.41 E-value=0.84 Score=54.17 Aligned_cols=35 Identities=26% Similarity=0.181 Sum_probs=26.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
.+.-|+|+|-||+||||+|+.|+..++ .....++.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~---~~~i~v~~ 271 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETG---AFFFLING 271 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTT---CEEEEEEH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcC---CcEEEEEc
Confidence 355689999999999999999998754 33344544
No 358
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.36 E-value=0.4 Score=49.26 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=32.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+.+.+....+|.||||+|..||..|...|.++-+++.|-
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 444444467999999999999999998999999998863
No 359
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.36 E-value=0.3 Score=55.61 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=35.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.+.+++++|-+|.||||+|..|+..+...|.++-+++.|
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 345789999999999999999999999899999999887
No 360
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.35 E-value=0.35 Score=53.00 Aligned_cols=40 Identities=3% Similarity=0.031 Sum_probs=25.9
Q ss_pred CCeEEEEeCCCCCHHHHHHHHH-HHcCCceEEEEEEEeCCH
Q 005233 433 GGQVGIFDATNSSRKRRNMLMK-MAEGNCKIIFLETICNDR 472 (707)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~~-l~~~~~~vifIE~~c~d~ 472 (707)
.+-+.|+|+++........+.+ +.+.+.+++++--.|+..
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 3677789999864443344444 466677888877777643
No 361
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.32 E-value=0.21 Score=52.07 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
.-|+++|-||+|||++|+.|+......+.....++.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~ 61 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNC 61 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEEC
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeC
Confidence 347789999999999999999876544444445544
No 362
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.30 E-value=0.2 Score=51.17 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.6
Q ss_pred EEEEccCCCChHHHHHHHHHHHh
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
++++|-||+|||++|+.+++.+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999999874
No 363
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.25 E-value=0.23 Score=46.61 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.+.-|+++|.||+|||||.+.|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999753
No 364
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.22 E-value=0.23 Score=45.97 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
+..|+++|.||+|||||.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999974
No 365
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.16 E-value=0.26 Score=47.03 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
..+.|+++|.+|+|||||.+.|....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998643
No 366
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.14 E-value=0.25 Score=44.89 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+=|+++|.+|+|||||...|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999998753
No 367
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.09 E-value=0.17 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.6
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
+|+++|-+||||||+|.+|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3788999999999999999855
No 368
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.09 E-value=0.29 Score=54.97 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=25.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 354 IVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
|+|+|-||+||||+|++|+..+. .....++..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~ 98 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS 98 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehh
Confidence 89999999999999999998864 334445443
No 369
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.05 E-value=0.23 Score=50.65 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+.-+++++|-||+||||++..|+..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 455899999999999999999997654
No 370
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.04 E-value=0.26 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
++-|+++|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998754
No 371
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.96 E-value=0.19 Score=49.06 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..-|+++|.||+||||+|..|.++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457999999999999999999875
No 372
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.79 E-value=0.29 Score=45.21 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.++.-|+++|.+|+|||||...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3566899999999999999998864
No 373
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.70 E-value=0.44 Score=56.57 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
|.=|+|.|.||+|||.+|++|+..++.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCC
Confidence 445889999999999999999988654
No 374
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.67 E-value=0.51 Score=49.15 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=32.0
Q ss_pred cEEEEEE-ccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 351 HLAIVLV-GLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 351 ~~lIvlv-GLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
+.+|+++ .-+|.||||+|..||..|...|.++-+++.|-
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3455555 56999999999999999998899999888754
No 375
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.63 E-value=0.28 Score=46.11 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=21.7
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
...+=|+++|.+|+|||||.++|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 35667899999999999999998753
No 376
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.55 E-value=0.28 Score=46.16 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+.-|+++|.+|+||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45668999999999999999998754
No 377
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.51 E-value=0.3 Score=44.16 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
++=|+++|.+|+|||||..+|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999988874
No 378
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.49 E-value=0.4 Score=49.07 Aligned_cols=41 Identities=10% Similarity=-0.034 Sum_probs=33.8
Q ss_pred cEEEEEE--ccCCCChHHHHHHHHHHHhhcCCceEEEechhhH
Q 005233 351 HLAIVLV--GLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYR 391 (707)
Q Consensus 351 ~~lIvlv--GLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddyR 391 (707)
+.+.++. +-.|+||||+|..|+..|...|.++-+++.|-..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 4444444 6999999999999999999899999999887553
No 379
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.42 E-value=0.31 Score=52.56 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
..-+|+++|-+||||||+.+.|+..+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 45689999999999999999999987654
No 380
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.32 E-value=0.33 Score=45.16 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=22.6
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
....+-|+++|.+|+|||||...|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345677999999999999999998754
No 381
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.28 E-value=0.29 Score=45.96 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
+++-|+++|.+|+|||||...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 5678999999999999999999754
No 382
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.21 E-value=0.3 Score=44.48 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.+-|+++|.+|+|||||...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46689999999999999998874
No 383
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.13 E-value=0.32 Score=44.64 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.++-|+++|.||+|||||..+|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 356799999999999999998863
No 384
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.08 E-value=0.32 Score=45.83 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.+.+-|+++|.+|+|||||..+|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3567899999999999999988864
No 385
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.94 E-value=0.33 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+-|+++|.+|+|||||...|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999888753
No 386
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.89 E-value=0.19 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
....|+++|.+|+|||||.+.|..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999988864
No 387
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.88 E-value=2.2 Score=55.38 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=38.4
Q ss_pred hhcccC-CCCCCcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 340 ADQMLG-PKEHRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 340 ~~~~~~-~~~~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.|.+.+ -.-.++..|+++|.||+||||||.+++......|.++..++..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 455555 2223567999999999999999999998877778888888764
No 388
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.76 E-value=0.4 Score=44.18 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
+++=|+++|.+|+|||||..+|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 456799999999999999999863
No 389
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.74 E-value=0.36 Score=43.67 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
++=|+++|.+|+|||||...|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 466899999999999999888743
No 390
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=87.70 E-value=0.23 Score=53.92 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=24.3
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
.+.+.|++-|.-|+||||+++.|+++|...+
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 4677899999999999999999999988665
No 391
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.67 E-value=0.51 Score=50.54 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=33.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.+.+.++.|-.|+||||+|..||..|...|.++-+++.|
T Consensus 143 ~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 344555567999999999999999999889999999876
No 392
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=87.61 E-value=0.77 Score=50.25 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar 373 (707)
.|+++|.|++|||||-.+|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~ 23 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVK 23 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998874
No 393
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.57 E-value=0.43 Score=43.95 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
+.+-|+++|.+|+|||||...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999988754
No 394
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.52 E-value=0.32 Score=45.58 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=20.9
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.+++-|+++|.+|+|||||..+|..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999998874
No 395
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=87.51 E-value=0.75 Score=53.56 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=52.1
Q ss_pred CCCeEEEEEEEeecccCCCceeEEecCCCccCCCCcccccccccccCCeeEEEEEeCCCCCceeeeEEE
Q 005233 27 AGGQFYVSLKMVNIKLKGDLIPHVYGSVPLVGSWDSSKALAMGRESASMWELSFVVPPNHETLDFKFLL 95 (707)
Q Consensus 27 ~~~~~~~~~k~~~p~l~~~~~~~i~Gs~p~lG~W~~~kal~m~~~~~~~W~ls~~~~~~~~~leyKf~l 95 (707)
..+..-|.|.+..|. ....+.|+||-. +|+|. +.+|.+. .+.|++++++|+- .-+|||+|
T Consensus 14 ~~~~~~v~f~~~~~~--~~~~v~~~G~Fn---~w~~~-~~~~~~~-~~~~~~~~~L~~g--~~~y~f~v 73 (696)
T 4aee_A 14 RKGRYIVKFTRHWPQ--YAKNIYLIGEFT---SLYPG-FVKLRKI-EEQGIVYLKLWPG--EYGYGFQI 73 (696)
T ss_dssp EEEEEEEEEEEECCT--TCSCEEEEETTS---CSSTT-SCBCEEE-TTEEEEEEEECSE--EEEEEEEE
T ss_pred CCCcEEEEEEEECCC--CCcEEEEEEecC---CCCCC-CcceEec-CCeEEEEEEcCCc--eEEEEEEE
Confidence 457788999999877 456899999998 99995 5899888 8999999999997 58999999
No 396
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=87.50 E-value=0.49 Score=44.20 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.++=|+++|.+|+|||||..+|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4677999999999999999998754
No 397
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.48 E-value=0.45 Score=54.34 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=28.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEE
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHF 385 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~ 385 (707)
-+++++|-||+||||+++.|.+.+...+.++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4788999999999999999999888777665544
No 398
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.39 E-value=0.3 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEEEccCCCChHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLT 372 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~La 372 (707)
+=|+++|.||+|||||..+|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 348999999999999999885
No 399
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.37 E-value=0.39 Score=43.60 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
++=|+++|.+|+|||||...|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999998875
No 400
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.35 E-value=0.36 Score=44.88 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
+++=|+++|.+|+|||||...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999998743
No 401
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=87.33 E-value=0.44 Score=45.12 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+.+=|+++|.+|+|||||...+...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999887653
No 402
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.33 E-value=0.29 Score=44.63 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=18.1
Q ss_pred EEEEEccCCCChHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLT 372 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~La 372 (707)
=|+++|.||+|||||.++|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999998885
No 403
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.10 E-value=0.48 Score=52.18 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=25.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCC
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGH 380 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi 380 (707)
.+++.|-||+||||++..++++|...+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999987765
No 404
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.03 E-value=0.61 Score=53.00 Aligned_cols=39 Identities=31% Similarity=0.302 Sum_probs=35.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
.+.++++.|.+|.||||+|..|+..|...|.++-+++.|
T Consensus 326 ~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~D 364 (589)
T 1ihu_A 326 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 364 (589)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCC
Confidence 567889999999999999999999999899999888776
No 405
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.00 E-value=0.37 Score=44.34 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=20.8
Q ss_pred CCcEEEEEEccCCCChHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLT 372 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~La 372 (707)
...+=|+++|.+|+|||||...|.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 345679999999999999998885
No 406
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.00 E-value=0.35 Score=48.65 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=33.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
+.+.++.+-.|+||||+|..|+..|...|.++-+++.|-.
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4455556889999999999999999988999999988643
No 407
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=86.88 E-value=0.12 Score=49.48 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=21.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.+.+=|+++|.+|+|||||..+|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3566799999999999999988763
No 408
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.89 E-value=0.31 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
-+++++|+.||||||+.+.|...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 48899999999999999999865
No 409
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.85 E-value=0.38 Score=45.91 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.+-|+++|.+|+|||||.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999854
No 410
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.82 E-value=0.28 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.5
Q ss_pred EEEEEEccCCCChHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar 373 (707)
+=|+++|.+|+|||||.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 411
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.81 E-value=0.31 Score=51.98 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
...+.++|-+|||||||++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998754
No 412
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=86.80 E-value=0.38 Score=47.69 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..++-|+++|.+|+|||||...|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 35678999999999999999988743
No 413
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.71 E-value=0.18 Score=56.67 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
=|+|+|-||+|||++|+.|+..+.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 478899999999999999998764
No 414
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.67 E-value=0.31 Score=49.02 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|-.|||||||.+.|+..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999998553
No 415
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.66 E-value=0.3 Score=48.68 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|-.|||||||.+.|+..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4488999999999999999998543
No 416
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.65 E-value=0.33 Score=57.00 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
-++|+|-||+|||++|+.|++.+.
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999973
No 417
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.60 E-value=0.33 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.-++.++|..|||||||.+.|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 447889999999999999999876
No 418
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.57 E-value=0.5 Score=44.49 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
..+=|+++|.+|+|||||...|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 457799999999999999999875
No 419
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=86.53 E-value=0.51 Score=44.54 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.1
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
....+=|+++|.+|+|||||...|..
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhc
Confidence 34566799999999999999998874
No 420
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.52 E-value=0.44 Score=43.44 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+=|+++|.+|+|||||..+|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999888743
No 421
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.49 E-value=0.42 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.++-|+++|.+|+|||||..+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 356799999999999999998875
No 422
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.47 E-value=0.42 Score=43.39 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
++=|+++|.+|+|||||..+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999888743
No 423
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.46 E-value=0.32 Score=48.95 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|-.|||||||.+.|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998654
No 424
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.38 E-value=0.58 Score=50.21 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=33.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec-hhhHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV-GKYRR 392 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~-ddyRr 392 (707)
-++++|-+||||||+++.|...+...+....+++. ++|+.
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 77 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKE 77 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHHH
Confidence 36788999999999999999888777888888875 45554
No 425
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=86.36 E-value=0.46 Score=50.00 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.3
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
+-.++++|-||+|||++|+.+++.+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 458999999999999999999999863
No 426
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.32 E-value=0.52 Score=48.32 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=32.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
.+.+..+-.|+||||+|..|+..|...|.++-+++.|-
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 45555688999999999999999999999999998875
No 427
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=86.30 E-value=0.75 Score=44.72 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=29.2
Q ss_pred EEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEe
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFN 386 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~ 386 (707)
.+.+..+-+|+||||+|..|+..|...|.++-+++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 45555567999999999999999998898887764
No 428
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.24 E-value=0.45 Score=43.83 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
..+=|+++|.+|+|||||...|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999998864
No 429
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.23 E-value=0.37 Score=44.71 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLT 372 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~La 372 (707)
.+++-|+++|.+|+|||||...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 357789999999999999998876
No 430
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.17 E-value=0.42 Score=56.98 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=30.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechhh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKY 390 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ddy 390 (707)
-++|+|-||+|||++|+.|++.+...+.....++...+
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 78999999999999999999998654555555655444
No 431
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.10 E-value=0.49 Score=43.02 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
++=|+++|.+|+|||||...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45689999999999999998873
No 432
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.10 E-value=2.5 Score=54.03 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=32.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEech
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVG 388 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~d 388 (707)
+.-++++.|-||+||||+|.+++......+..+-.++..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E 420 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 456999999999999999999988776667677777654
No 433
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.09 E-value=0.46 Score=43.86 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.++-|+++|.+|+|||||...|...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4667999999999999999988643
No 434
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=86.07 E-value=2.7 Score=45.25 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.0
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.+-|+++|.+++|||||..+|....
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~ 27 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKIL 27 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChh
Confidence 4569999999999999999998764
No 435
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=86.03 E-value=0.25 Score=52.66 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=23.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcC
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLG 379 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~g 379 (707)
+.+.|++-|.-|+||||+++.|+++|...+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 467899999999999999999999988665
No 436
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=85.99 E-value=2.5 Score=45.56 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
..+-|+++|.+++|||||..+|...+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~ 36 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAA 36 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhh
Confidence 456799999999999999999987543
No 437
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=85.92 E-value=1.4 Score=48.30 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.++-|+++|.||+|||||.+.|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4577999999999999999998754
No 438
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=85.92 E-value=0.46 Score=43.19 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
+.+=|+++|.+|+|||||.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567999999999999999998754
No 439
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=85.91 E-value=0.4 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
-++.++|-.|||||||.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999998654
No 440
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.87 E-value=0.51 Score=44.40 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
...-|+++|.+|+|||||..+|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999988864
No 441
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=85.87 E-value=0.44 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.3
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
..++-|+|+|.||+|||||...|..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 3567899999999999999988863
No 442
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.84 E-value=0.41 Score=48.25 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
..-++.++|-.|||||||.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999998654
No 443
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=85.83 E-value=3 Score=45.71 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+-|+++|.+++|||||..+|...
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4567999999999999999888443
No 444
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.76 E-value=0.44 Score=43.25 Aligned_cols=21 Identities=48% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEccCCCChHHHHHHHHHH
Q 005233 354 IVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 354 IvlvGLPGSGKSTlAr~Lar~ 374 (707)
|+++|.+|+|||||...|...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998643
No 445
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.72 E-value=0.47 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHh
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLR 376 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~ 376 (707)
+.+++|-.|||||||.++|.--|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 889999999999999999987654
No 446
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.65 E-value=0.51 Score=43.57 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.++=|+++|.+|+|||||..+|...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999888743
No 447
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.64 E-value=0.44 Score=44.53 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
..+=|+++|.+|+|||||.+.|....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 45679999999999999998776544
No 448
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.60 E-value=0.37 Score=49.55 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|-.|||||||.+.|+..+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999998543
No 449
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.55 E-value=0.46 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=23.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
..-++.++|-||||||||++.|+..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46699999999999999999999775
No 450
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.52 E-value=0.4 Score=45.96 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.4
Q ss_pred CCcEEEEEEccCCCChHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLT 372 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~La 372 (707)
...+-|+++|.+|+|||||.++|.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999998884
No 451
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.51 E-value=0.53 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+-|+++|.+|+|||||...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999988754
No 452
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=85.50 E-value=0.63 Score=43.74 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.0
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
...+=|+++|.+|+|||||..+|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999998753
No 453
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.44 E-value=0.47 Score=43.55 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
+++-|+++|.+|+|||||...|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 356799999999999999998874
No 454
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.42 E-value=0.44 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.-++.++|-.|||||||.+.|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 448999999999999999999964
No 455
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.40 E-value=0.52 Score=43.58 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
..+=|+++|.+|+|||||...|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 356799999999999999988874
No 456
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.39 E-value=0.5 Score=48.68 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=25.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhcCCceEEEec
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNV 387 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~ 387 (707)
+++++|.+|+||||+++.+++.+.. ....++.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~ 63 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNL---PYIYLDL 63 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEc
Confidence 8999999999999999999988643 3344544
No 457
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.39 E-value=0.46 Score=43.99 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.7
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
+.+=|+++|.+|+|||||..+|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 356799999999999999988874
No 458
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=85.38 E-value=0.58 Score=51.52 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.+.-|+++|.|++|||||..+|..
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~ 217 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLG 217 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT
T ss_pred ccceeEEecCCCCCHHHHHHHHhC
Confidence 456789999999999999988873
No 459
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=85.30 E-value=0.55 Score=44.25 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.8
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.+++-|+++|.+|+|||||...|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 4567799999999999999998874
No 460
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.30 E-value=0.57 Score=44.10 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
...+=|+++|.+|+|||||...|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 45677999999999999999988753
No 461
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.16 E-value=0.45 Score=44.37 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.5
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 005233 353 AIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar 373 (707)
=|+++|.+|+|||||...|..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999988874
No 462
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.14 E-value=0.46 Score=44.10 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
+.+-|+++|.+|+|||||...|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999988873
No 463
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.10 E-value=0.66 Score=43.12 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+=|+++|.+|+|||||...|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999988743
No 464
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.07 E-value=0.47 Score=54.29 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 353 AIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 353 lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
.++|+|-||+||||+|+.|+..+...
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 78999999999999999999987644
No 465
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.05 E-value=0.4 Score=48.62 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|-.|||||||.+.|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4489999999999999999998654
No 466
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.04 E-value=0.41 Score=48.96 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|..|||||||.+.|+..+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998543
No 467
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=85.03 E-value=0.48 Score=45.49 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=20.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
+.+-|+++|.+|+|||||..+|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998754
No 468
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=84.99 E-value=0.55 Score=52.92 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
...+|.++|++|.||||||+.++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999996
No 469
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.96 E-value=0.45 Score=49.60 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..-+++++|-||+|||++|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999875
No 470
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=84.96 E-value=0.55 Score=43.84 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
+++-|+++|.+|+|||||...|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999988864
No 471
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=84.89 E-value=1 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
+..-|+++|.+|+|||||..+|..+
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 4567999999999999999999854
No 472
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=84.89 E-value=0.65 Score=43.57 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+=|+++|.+|+|||||..+|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999988753
No 473
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=84.88 E-value=2.4 Score=47.80 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=27.8
Q ss_pred CCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeC
Q 005233 433 GGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICN 470 (707)
Q Consensus 433 ~G~vVIlDAtn~~-~e~R~~l~~l~~~~~~vifIE~~c~ 470 (707)
.+-++|+|++... ...+..|..+...+.+++++--.++
T Consensus 107 D~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~D 145 (528)
T 3tr5_A 107 DSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMD 145 (528)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 4889999999864 4566777766777888777655555
No 474
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=84.87 E-value=2.7 Score=43.88 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=24.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHcCCceEEEEEEEeCCHHHHHHHHHHh
Q 005233 433 GGQVGIFDATNSSRKRRNMLMKMAEGNCKIIFLETICNDRDIIERNIRLK 482 (707)
Q Consensus 433 ~G~vVIlDAtn~~~e~R~~l~~l~~~~~~vifIE~~c~d~e~i~~rI~~r 482 (707)
.|..||+|-.- +-+..+.......++|-+..+..+.++++++++
T Consensus 188 ~gk~viLdid~------qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r 231 (292)
T 3tvt_A 188 KGKHCILDVSG------NAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRM 231 (292)
T ss_dssp HTCEEEECCCT------HHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTS
T ss_pred cCCcEEEeccc------hhhhhcccccccceEEEEECCCHHHHHHHHhCC
Confidence 69999998762 333334222223334433456677787765443
No 475
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.77 E-value=0.86 Score=50.00 Aligned_cols=29 Identities=24% Similarity=0.140 Sum_probs=25.0
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhc
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWL 378 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~ 378 (707)
..-+|+++|-+||||||+.+.|...+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 34589999999999999999999887643
No 476
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.71 E-value=4.1 Score=52.86 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=33.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhhcCCceEEEechh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGK 389 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~~gi~tdv~~~dd 389 (707)
++-+++++|-||+||||+|.++...-...|.++..++..+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee 1119 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1119 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccc
Confidence 4568999999999999999999877776788888877653
No 477
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=84.71 E-value=0.51 Score=48.40 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.-++.++|-.|||||||.+.|+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 478
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=84.70 E-value=0.67 Score=43.84 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+-|+++|.+|+|||||...|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999888743
No 479
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=84.69 E-value=0.56 Score=44.44 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
..++=|+++|.+|+|||||..+|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999863
No 480
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=84.66 E-value=0.5 Score=44.96 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.0
Q ss_pred CCCcEEEEEEccCCCChHHHHHHHHH
Q 005233 348 EHRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 348 ~~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
+.+.+=|+++|.+|+|||||.+.|..
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34566799999999999999886654
No 481
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=84.63 E-value=0.44 Score=48.92 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|..|||||||.+.|+..+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4588999999999999999998543
No 482
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.61 E-value=0.44 Score=48.66 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|-.|||||||.+.|+..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4589999999999999999998654
No 483
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=84.60 E-value=2.5 Score=46.83 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+=|+++|.+++|||||..+|...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999998655
No 484
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=84.60 E-value=0.44 Score=49.01 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|-.|||||||.+.|+..+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998553
No 485
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.55 E-value=0.44 Score=48.03 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCChHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.-++.++|-.|||||||.+.|+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999854
No 486
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=84.54 E-value=0.43 Score=49.37 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=21.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|-.|||||||.+.|+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4489999999999999999998654
No 487
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.42 E-value=0.44 Score=48.50 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|..|||||||.+.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998654
No 488
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.37 E-value=0.59 Score=44.76 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=19.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLT 372 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~La 372 (707)
++.-|+++|.+|+|||||.++|.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34568999999999999999886
No 489
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.36 E-value=0.45 Score=47.57 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.9
Q ss_pred cEEEEEEccCCCChHHHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.-++.++|..|||||||.+.|+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4489999999999999999998654
No 490
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=84.32 E-value=0.55 Score=44.61 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.9
Q ss_pred CcEEEEEEccCCCChHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
++.-|+++|.+|+|||||.++|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999998875
No 491
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=84.21 E-value=0.61 Score=43.64 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.++-|+++|.+|+|||||..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999998753
No 492
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=84.20 E-value=0.52 Score=44.76 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.1
Q ss_pred cEEEEEEccCCCChHHHHHHHHH
Q 005233 351 HLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 351 ~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.+=|+++|.+|+|||||...|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999988864
No 493
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=84.10 E-value=0.73 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
....+|.++|.+|.||||+|+++++
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3456899999999999999999864
No 494
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=84.08 E-value=0.67 Score=43.78 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+=|+++|.+|+|||||...|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 5677999999999999999888753
No 495
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=84.04 E-value=0.51 Score=44.41 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=21.1
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
.+.+-|+++|.+|+|||||..+|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999888644
No 496
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=84.04 E-value=3.6 Score=47.87 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=27.5
Q ss_pred CCeEEEEeCCCCC-HHHHHHHHHHHcCCceEEEEEEEeC
Q 005233 433 GGQVGIFDATNSS-RKRRNMLMKMAEGNCKIIFLETICN 470 (707)
Q Consensus 433 ~G~vVIlDAtn~~-~e~R~~l~~l~~~~~~vifIE~~c~ 470 (707)
.+-++|+|++... ...+..|..+.+.+.+++++--.++
T Consensus 102 D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCC
Confidence 5889999999864 4566677767666788777655554
No 497
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=83.99 E-value=0.6 Score=48.04 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHHH
Q 005233 352 LAIVLVGLPARGKTFTAAKLTRYL 375 (707)
Q Consensus 352 ~lIvlvGLPGSGKSTlAr~Lar~L 375 (707)
.+++++|.+|+||||+++.+++.+
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 388999999999999999999875
No 498
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.99 E-value=0.6 Score=44.02 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHH
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRY 374 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~ 374 (707)
..+=|+++|.+|+|||||...|...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 4566999999999999999998764
No 499
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=83.98 E-value=0.78 Score=44.86 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.6
Q ss_pred CCcEEEEEEccCCCChHHHHHHHHH
Q 005233 349 HRHLAIVLVGLPARGKTFTAAKLTR 373 (707)
Q Consensus 349 ~~~~lIvlvGLPGSGKSTlAr~Lar 373 (707)
.+..-|+++|.+|+|||||..+|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999988864
No 500
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.88 E-value=0.3 Score=58.02 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.1
Q ss_pred CcEEEEEEccCCCChHHHHHHHHHHHhh
Q 005233 350 RHLAIVLVGLPARGKTFTAAKLTRYLRW 377 (707)
Q Consensus 350 ~~~lIvlvGLPGSGKSTlAr~Lar~L~~ 377 (707)
.+..++|+|-||+||||+|+.|+..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456889999999999999999998753
Done!