BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005234
(707 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens
GN=TAF2 PE=1 SV=3
Length = 1199
Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 134/478 (28%), Positives = 227/478 (47%), Gaps = 65/478 (13%)
Query: 1 MLEKQMGSNFFRKILQNIISRAQGASPVR---------TLSTKEF-RHFANKVGNLERPF 50
++E ++ F ++ ++S A AS + +ST F + +N G +P
Sbjct: 459 LIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPL 518
Query: 51 LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 110
+K+ WV G F++N+++N++EL + +D T G
Sbjct: 519 IKQ----WVDQSGVVKFYGSFAFNRKRNVLELEIKQDYT------------------SPG 556
Query: 111 DIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCD 170
+ G + + V ELDG ++H L + ++ + +I CHSK + K
Sbjct: 557 TQKYVGPLKVTVQELDGSFNH-TLQIEENSLKH-DIPCHSKSRRNKKKKIPLM------- 607
Query: 171 DNGDAVAGLDMRS-SMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQA 229
NG+ V +D+ + +SPL WIR DP+M L ++ F Q MW QL + DVVAQ ++
Sbjct: 608 -NGEEV-DMDLSAMDADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQES 665
Query: 230 IAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA-SEETDWAGLLHLVKFY 288
I ALE P + + L + L + F+RVR+ A + LA A S + W G + +
Sbjct: 666 ILALEKFPTPASRLA--LTDILEQEQCFYRVRMSACFCLAKIANSMVSTWTGPPAMKSLF 723
Query: 289 KSRRF--DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYN 346
+R F + + N+F F YF+ + +P A+A++R N P+E + F+L L+KYN
Sbjct: 724 -TRMFCCKSCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIKYN 782
Query: 347 DNNGNPYSDVFWLA----ALVQSVGELEFGQQSILFLSSL-------LKRIDRLLQFDRL 395
DN N +SD ++ A AL SV + L +L L+ I R L ++L
Sbjct: 783 DNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNMEKL 842
Query: 396 MPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLD 453
+PSY +T+SC+R + L+ +G + D L K + ++ +R+ A A++D
Sbjct: 843 LPSYRHTITVSCLRAIR--VLQKNGHVPSDPA--LFKSYAEYGHFVDIRIAALEAVVD 896
>sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio
GN=taf2 PE=2 SV=2
Length = 1191
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 137/478 (28%), Positives = 224/478 (46%), Gaps = 65/478 (13%)
Query: 1 MLEKQMGSNFFRKILQNIISRAQGASPVRT---------LSTKEF-RHFANKVGNLERPF 50
++E ++ F ++ ++S A AS + +ST F + +N G P
Sbjct: 448 LIENRISMEFMLQVFNKLLSLASTASSQKYQSHMWSQMLVSTSGFLKSISNVSGKDIGPL 507
Query: 51 LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 110
+K+ WV G F++N+++N++EL + +D T G
Sbjct: 508 IKQ----WVDQSGVVKFFGSFAFNRKRNVLELEIRQDYT------------------SSG 545
Query: 111 DIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCD 170
+ G + + V ELDG ++H L + ++ + +I CHSK + K
Sbjct: 546 TQKYVGPIKVTVQELDGSFNH-TLQIEENSLKH-DIPCHSKSRRNKKKKIPLM------- 596
Query: 171 DNGDAVAGLDMRS-SMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQA 229
NG+ V +D+ + +SPL WIR DP+M L ++ F Q MW QL + DVVAQ +A
Sbjct: 597 -NGEEV-DMDLSAMDADSPLLWIRIDPDMSILRKVEFEQADFMWQYQLRYERDVVAQEEA 654
Query: 230 IAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA-SEETDWAGLLHLVKFY 288
I ALE P + L + L + F++VR+ A + LA A S + W G + +
Sbjct: 655 ILALEKFP--TPPSRRALTDILEQDQCFYKVRMHACFCLAKIANSMVSTWTGPPAMKSLF 712
Query: 289 KSRRF--DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYN 346
+R F + + N+F F YF+ + IP A+A +R N PRE + F+L L+KYN
Sbjct: 713 -TRMFCCKSCPNIVKTNNFISFQSYFLQKTIPVAMAQLRDVQNLCPREVLSFILDLIKYN 771
Query: 347 DNNGNPYSDVFWLA----ALVQSVGELEFGQQSILFLSSL-------LKRIDRLLQFDRL 395
DN N +SD ++ A AL S+ + + SL L+ I R L ++L
Sbjct: 772 DNRKNKFSDNYYRAELIDALTNSLTPAISINNEVRTVDSLNADVRLILEEITRFLNMEKL 831
Query: 396 MPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLD 453
+PSY +T+SC+R + L+ +G I D L K + ++ VR+ A A++D
Sbjct: 832 LPSYRNTITVSCLRAIRM--LQKNGHIPSDPT--LFKSYAEYGHFVDVRIAALEAVID 885
>sp|Q5ZIT8|TAF2_CHICK Transcription initiation factor TFIID subunit 2 OS=Gallus gallus
GN=TAF2 PE=2 SV=1
Length = 1168
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 136/478 (28%), Positives = 230/478 (48%), Gaps = 65/478 (13%)
Query: 1 MLEKQMGSNFFRKILQNIISRAQGASPVR---------TLSTKEF-RHFANKVGNLERPF 50
++E ++ F ++ ++S A AS + +ST F + +N G +P
Sbjct: 449 LIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPL 508
Query: 51 LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 110
+K+ WV G F++N+++N++EL + +D T +P G
Sbjct: 509 IKQ----WVDQSGVVKFYGSFAFNRKRNVLELEIKQDYT------SP------------G 546
Query: 111 DIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCD 170
+ G + + V ELDG ++H L + ++ + +I CHSK + K
Sbjct: 547 TQKYVGPLKVTVQELDGSFNH-TLQIEENSLKH-DIPCHSKSRRNKKKKIPLM------- 597
Query: 171 DNGDAVAGLDMRS-SMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQA 229
NG+ V +D+ + +SPL WIR DP+M L ++ F Q MW QL + DVVAQ +A
Sbjct: 598 -NGEEV-DMDLSAMDADSPLLWIRIDPDMSVLRKVEFEQSDFMWQYQLRYERDVVAQEEA 655
Query: 230 IAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA-SEETDWAGLLHLVKFY 288
I ALE P + + L + L + F+RVR+ A + LA A S + W G + +
Sbjct: 656 ILALEKFPTPASRL--ALTDILEQEQCFYRVRMLACFCLAKIANSMVSTWTGPPAMKSLF 713
Query: 289 KSRRF--DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYN 346
+R F + + N+F +F YF+ + +P A+A++R N P+E + F+L L+KYN
Sbjct: 714 -TRMFCCKTCPNIVKTNNFMNFQSYFLQKTMPVAMALLRDVHNLCPKEVLMFILDLIKYN 772
Query: 347 DNNGNPYSDVFWLA----ALVQSVGELEFGQQSILFLSSL-------LKRIDRLLQFDRL 395
DN N +SD ++ A AL SV + L +L L+ I R L ++L
Sbjct: 773 DNRKNKFSDNYYRAELIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNMEKL 832
Query: 396 MPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLD 453
+PSY +T+SC++ + L+ +G + D L K + ++ VR+ A A++D
Sbjct: 833 LPSYRHTITVSCLKAIR--VLQKNGHVPSDPA--LFKSYAEYGHFVDVRIAALEAVVD 886
>sp|Q8C176|TAF2_MOUSE Transcription initiation factor TFIID subunit 2 OS=Mus musculus
GN=Taf2 PE=2 SV=2
Length = 1104
Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 136/479 (28%), Positives = 231/479 (48%), Gaps = 67/479 (13%)
Query: 1 MLEKQMGSNFFRKILQNIISRAQGASPVR---------TLSTKEF-RHFANKVGNLERPF 50
++E ++ F ++ ++S A AS + +ST F + +N G +P
Sbjct: 449 LIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTYGFLKSISNVSGKDIQPL 508
Query: 51 LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 110
+K+ W+ G F++N+++N++EL + +D T +P G
Sbjct: 509 IKQ----WLDQSGVVKFYGSFAFNRKRNVLELEIKQDYT------SP------------G 546
Query: 111 DIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCD 170
+ G + + V ELDG ++H L + ++ + +I CHSK + K
Sbjct: 547 TQKYVGPLKVTVQELDGSFNH-TLQIEENSLKH-DIPCHSKSRRNKKKKIPLM------- 597
Query: 171 DNGDAVAGLDMRSSME--SPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQ 228
NG+ V +D+ S+ME SPL WIR DP+M L ++ F Q MW +L + DVVAQ +
Sbjct: 598 -NGEEV-DMDL-SAMEADSPLLWIRIDPDMSVLRKVEFEQADFMWQYELRYERDVVAQQE 654
Query: 229 AIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA-SEETDWAGLLHLVKF 287
+I ALE P + + L + L + F+RVR+ A + LA A S + W G +
Sbjct: 655 SILALEKFPTPASRLA--LTDILEQEQCFYRVRMSACFCLAKIANSMVSTWTGPPAMKSL 712
Query: 288 YKSRRF--DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKY 345
+ +R F + + N+F F YF+ + +P A+A++R N P+E + F+L L+KY
Sbjct: 713 F-TRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIKY 771
Query: 346 NDNNGNPYSDVFWLA----ALVQSVGELEFGQQSILFLSSL-------LKRIDRLLQFDR 394
NDN N +SD ++ A AL SV + L +L L+ I R L ++
Sbjct: 772 NDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNMEK 831
Query: 395 LMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLD 453
L+PSY +T+SC+R + L+ +G + D L K + ++ +R+ A A++D
Sbjct: 832 LLPSYRHTITVSCLRAIR--VLQKNGHVPSD--ASLFKSYAEYGHFVDIRIAALEAVVD 886
>sp|P87121|TAF2_SCHPO Transcription initiation factor TFIID subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf2 PE=3 SV=3
Length = 1172
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 202/432 (46%), Gaps = 54/432 (12%)
Query: 31 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTV 90
LST F K ++ L F +W+ G P+ R+ +N++K I+E+ +
Sbjct: 511 LSTSHFLKTCEKASHMR---LDVFAQQWIYGYGYPIFRVVQRFNRKKMIIEMGI-DQVQT 566
Query: 91 KPDSRTPVLSSNTDSE------NRDGDIGWP---GMMSIRVHELDGM-YDHPILPMAGDA 140
K R P+ N S+ N G P G M+IR+HE DG Y+H + D+
Sbjct: 567 KEAPRAPMSDKNFLSDAIRHLNNESIPTGLPVFSGPMTIRIHEADGTPYEHVV--ELKDS 624
Query: 141 WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGD----AVAGL-DMRSSMES-------- 187
+ L+IQ ++K + K K DG D NGD + L D+ S E
Sbjct: 625 FTKLDIQYNTKYKRISRNRSTKNVKRDG-DHNGDDSDYVIRSLGDVLQSDEDIERWHLYD 683
Query: 188 ------------PLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 235
WIR D + E++ ++ QP M+++QL++D DVVAQ + I +
Sbjct: 684 YTKEEEDTMATEAFEWIRVDADFEWICDLRVRQPEHMYVSQLQQDRDVVAQLETIRHFTS 743
Query: 236 LPH-LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFD 294
+S V L L D++ ++ +R EAA ALA A E DW G HL Y +
Sbjct: 744 ESFTVSQQVSTVLLRTLLDNRYYYGIRQEAARALARCAIPELDWVGYYHLRMAYLEKFCF 803
Query: 295 ENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYS 354
++ +P+ NDF + +EY+V A+ + +R +P + +L LL YNDN N +S
Sbjct: 804 KDSTIPKSNDFSNITEYYVKCAMLESFPNIRDRKGVTPSSVKKLLLDLLCYNDNANNEFS 863
Query: 355 DVFWLAALVQSV--GELEFGQ---------QSILFLSSLLKRIDRLLQFDRLMPSYNGIL 403
D +++ L+ S+ G + G+ + + F++ ++ IDR ++ D MPS+ I+
Sbjct: 864 DAYFICLLIDSLVEGLIPRGETVQYAFSDPEHMEFVNQVINEIDRYMRIDACMPSFKNII 923
Query: 404 TISCIRTLTQIA 415
T ++ ++A
Sbjct: 924 TCKSLKAKLRLA 935
>sp|Q24325|TAF2_DROME Transcription initiation factor TFIID subunit 2 OS=Drosophila
melanogaster GN=Taf2 PE=1 SV=2
Length = 1221
Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 231/502 (46%), Gaps = 66/502 (13%)
Query: 1 MLEKQMGSNFFRKILQNIISRAQGASPVRT---------LSTKEFRHFANKVGNLERPFL 51
MLE ++G ++ ++ A A+ + +ST F + + +
Sbjct: 462 MLENRIGQELLIQVFNKQLALASSAATTKIGAGLWSQLLISTNIF---IKAIFTVTGKDM 518
Query: 52 KEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGD 111
F +WV T G + +N+++N +EL + +D N+ G
Sbjct: 519 SVFMDQWVRTGGHAKFSLTSVFNRKRNTIELEIRQDYV-----------------NQRGI 561
Query: 112 IGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDD 171
+ G + +++ ELDG + H + Q+ S + + K K C
Sbjct: 562 RKYNGPLMVQLQELDGTFKHTL--------QIESTLVKSDITCHSKSRRNKKKKIPLC-- 611
Query: 172 NGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIA 231
G+ V +D+ + +SP+ WIR DPEM L ++ QP W QL + DV AQ QAI
Sbjct: 612 TGEEV-DMDLSAMDDSPVLWIRLDPEMILLRDLIIEQPDFQWQYQLRHERDVTAQFQAIQ 670
Query: 232 ALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-DWAGLLHLVKFYKS 290
AL+ P + + L + + + F++VR EAA++L A++ W+G ++ +
Sbjct: 671 ALQKYPTNATRLA--LTDTIESERCFYQVRCEAAHSLTKVANQMVASWSGPPAMLNIF-- 726
Query: 291 RRFDENIGLP---RPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYND 347
R+F + P + N+F +F YF+ +AIP A+A +R + P E + F+ L KYN+
Sbjct: 727 RKFFGSFSAPHIIKLNNFSNFQLYFLQKAIPVAMAGLRTSHGICPPEVMRFLFDLFKYNE 786
Query: 348 NNGNPYSDVFWLAALVQSVGE---------LEFGQQSILFLSS----LLKRIDRLLQFDR 394
N+ N Y+D ++ AALV+++GE + Q + LS+ +L + RLL ++
Sbjct: 787 NSRNHYTDAYYRAALVEALGETLTPVVSVAIHGTQITTDSLSTDAKLVLDEVTRLLNMEK 846
Query: 395 LMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDL 454
+PSY ++++SC++ + KL F L + + + + ++ +R+ A L+D
Sbjct: 847 HLPSYKYMVSVSCLKVIR----KLQKFGHLPSLPHIYRSYAEYGIYLDLRIAAMECLVDF 902
Query: 455 EFHCNGIDSALSLFIKSVEEEP 476
+G L I +E +P
Sbjct: 903 -VKVDGRSEDLEHLITLLETDP 923
>sp|P23255|TAF2_YEAST Transcription initiation factor TFIID subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF2 PE=1 SV=3
Length = 1407
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 190/401 (47%), Gaps = 56/401 (13%)
Query: 13 KILQNIISRA-QGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGF 71
++L I +A G P +L++ F+H +V + L+ FF WV G P+LR+
Sbjct: 630 RVLPKIFLQAMSGDLPNNSLTSSHFQHVCERVN---KSKLENFFNEWVYGSGVPILRVTQ 686
Query: 72 SYNKRKNIVELAVLR--------DCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVH 123
+N+++ ++EL + + + V + + + + + + G M+IR+H
Sbjct: 687 RFNRKRMVIELGIRQVQDEELGHEKVVGEEGFFKSALDHLEHPDLNRTECFTGSMTIRIH 746
Query: 124 ELDGM-YDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGS------------KPDGCD 170
E DG Y+H + D + ++IQ ++K RR K G+ KP D
Sbjct: 747 EHDGTPYEHIV--EIKDTFTKIDIQYNTKY--RRLRKRGGGANDENGVENNNEEKPIVVD 802
Query: 171 DN--GDAVAGLDM----------RSSMESPL-------SWIRADPEMEYLAEIHFNQPVQ 211
N G+ + R+S + L WIR D ++E++ ++H NQP
Sbjct: 803 VNCLGNVYMSPEECSRFSLTEFNRTSESNELLKQNEAFEWIRIDSDLEWICQMHINQPDY 862
Query: 212 MWINQLEKDGDVVAQAQAIAALE------ALPHLSFNVVNTLNNFLSDSKAFWRVRIEAA 265
M+ +QL +DGD+ AQ +AI E + L ++ + L D + F+ +R+ A
Sbjct: 863 MFSSQLRQDGDIEAQLEAIRYYEDVVVNGGVKSLVYSSI--LFRTAIDERYFFGIRLAAC 920
Query: 266 YALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR 325
AL+ + G+ HL++ ++ E+ +P+ N+F + YF+ IP +A V+
Sbjct: 921 EALSKYVYDPDFTGGVKHLIQIFQILFCLEDSNIPKSNNFENPKLYFLQCNIPKYLAKVK 980
Query: 326 AADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSV 366
+ K P+ +F+L +L YN+N N YSD ++ +L+++V
Sbjct: 981 NENGKCPKLVKQFLLDILVYNENGENKYSDDAYVRSLIENV 1021
>sp|Q8JG64|PDIA3_CHICK Protein disulfide-isomerase A3 OS=Gallus gallus GN=PDIA3 PE=2 SV=1
Length = 505
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 24 GASPVRTLSTKEFRHFANKVGNLERP--FLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVE 81
GAS V LS +F G ERP L EFF W G C + + K IV
Sbjct: 23 GASDVVELSDADFES-----GLAERPGLVLVEFFAPWCGHCKRLAPEYEAAATRLKGIVP 77
Query: 82 LAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHP 132
L V DCT +N+++ N+ G G+P + R E G YD P
Sbjct: 78 L-VKVDCT-----------ANSNTCNKYGVSGYPTLKIFRDGEESGTYDGP 116
>sp|P38657|PDIA3_BOVIN Protein disulfide-isomerase A3 OS=Bos taurus GN=PDIA3 PE=2 SV=1
Length = 505
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 51 LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 110
L EFF W G C + + K IV LA + DCT +NT++ N+ G
Sbjct: 49 LVEFFAPWCGHCKKLAPEYEAAATRLKGIVPLAKV-DCT-----------ANTNTCNKYG 96
Query: 111 DIGWPGMMSIRVHELDGMYDHP 132
G+P + R E G YD P
Sbjct: 97 VSGYPTLKIFRDGEESGAYDGP 118
>sp|Q4VIT4|PDIA3_CHLAE Protein disulfide-isomerase A3 OS=Chlorocebus aethiops GN=PDIA3
PE=2 SV=1
Length = 505
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 51 LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 110
L EFF W G C + + K IV LA + DCT +NT++ N+ G
Sbjct: 49 LVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKV-DCT-----------ANTNTCNKYG 96
Query: 111 DIGWPGMMSIRVHELDGMYDHP 132
G+P + R E G YD P
Sbjct: 97 VSGYPTLKIFRDGEEAGAYDGP 118
>sp|Q5RDG4|PDIA3_PONAB Protein disulfide-isomerase A3 OS=Pongo abelii GN=PDIA3 PE=2 SV=1
Length = 505
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 51 LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 110
L EFF W G C + + K IV LA + DCT +NT++ N+ G
Sbjct: 49 LVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKV-DCT-----------ANTNTCNKYG 96
Query: 111 DIGWPGMMSIRVHELDGMYDHP 132
G+P + R E G YD P
Sbjct: 97 VSGYPTLKIFRDGEEAGAYDGP 118
>sp|P30101|PDIA3_HUMAN Protein disulfide-isomerase A3 OS=Homo sapiens GN=PDIA3 PE=1 SV=4
Length = 505
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 51 LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 110
L EFF W G C + + K IV LA + DCT +NT++ N+ G
Sbjct: 49 LVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKV-DCT-----------ANTNTCNKYG 96
Query: 111 DIGWPGMMSIRVHELDGMYDHP 132
G+P + R E G YD P
Sbjct: 97 VSGYPTLKIFRDGEEAGAYDGP 118
>sp|P11598|PDIA3_RAT Protein disulfide-isomerase A3 OS=Rattus norvegicus GN=Pdia3 PE=1
SV=2
Length = 505
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 51 LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 110
L EFF W G C + + K IV LA + DCT +NT++ N+ G
Sbjct: 49 LVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKV-DCT-----------ANTNTCNKYG 96
Query: 111 DIGWPGMMSIRVHELDGMYDHP 132
G+P + R E G YD P
Sbjct: 97 VSGYPTLKIFRDGEEAGAYDGP 118
>sp|P27773|PDIA3_MOUSE Protein disulfide-isomerase A3 OS=Mus musculus GN=Pdia3 PE=1 SV=2
Length = 505
Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 51 LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 110
L EFF W G C + + K IV LA + DCT +NT++ N+ G
Sbjct: 49 LVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKV-DCT-----------ANTNTCNKYG 96
Query: 111 DIGWPGMMSIRVHELDGMYDHP 132
G+P + R E G YD P
Sbjct: 97 VSGYPTLKIFRDGEEAGAYDGP 118
>sp|Q6FL34|ALG10_CANGA Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol
alpha-1,2-glucosyltransferase OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=ALG10 PE=3 SV=1
Length = 522
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 434 FRDFNTIW----QVRVEASRALLDLEFHCNGIDSALSLFIKSVEEE-----PSLRGQVKL 484
FR N +W + V +A++ +F+ +G+++ L LFI SVEE P V
Sbjct: 209 FRQTNIVWCGFIMLIVVERQAIIAKQFNTHGLNNYLKLFIHSVEEFQTLVLPYALNFVGF 268
Query: 485 GIHAMRICQIKGGSDSNHE-----VDTVTLVALLNLLESRIAFNNVFLRHHL 531
++ + I G SNH V A L + + F+ FLR +L
Sbjct: 269 FLYLIWNRSITLGDKSNHNAGIHLVQVFYCFAFLTVFSVPLWFSKNFLRMYL 320
>sp|B2TP91|VATA_CLOBB V-type ATP synthase alpha chain OS=Clostridium botulinum (strain
Eklund 17B / Type B) GN=atpA PE=3 SV=1
Length = 592
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 353 YSDVF--WLAA-LVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIR 409
Y+D W+ + ++ G L +IL + L+ I RL+ D L S L + +
Sbjct: 437 YADTIDKWMNGNVAENWGALRLEAMTILQDEAQLQEIVRLVGIDAL--SEKDRLKLDVAK 494
Query: 410 TLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRAL 451
++ + L+ +GF +D L K ++ N I R EA RAL
Sbjct: 495 SIREDYLQQNGFHEIDTYTSLKKQYKMLNLILGYRKEAERAL 536
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254,602,036
Number of Sequences: 539616
Number of extensions: 10500034
Number of successful extensions: 22769
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 22731
Number of HSP's gapped (non-prelim): 23
length of query: 707
length of database: 191,569,459
effective HSP length: 125
effective length of query: 582
effective length of database: 124,117,459
effective search space: 72236361138
effective search space used: 72236361138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)