Query 005234
Match_columns 707
No_of_seqs 186 out of 293
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 20:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1932 TATA binding protein a 100.0 2E-105 4E-110 920.4 33.2 519 5-557 441-990 (1180)
2 PRK14015 pepN aminopeptidase N 99.7 2.2E-15 4.7E-20 179.8 35.8 175 1-236 395-579 (875)
3 TIGR02414 pepN_proteo aminopep 99.7 2.7E-14 5.9E-19 170.2 36.5 174 1-236 382-567 (863)
4 COG0308 PepN Aminopeptidase N 99.2 8.8E-10 1.9E-14 132.4 24.0 235 1-326 409-645 (859)
5 PRK09687 putative lyase; Provi 98.8 8.1E-07 1.8E-11 94.3 21.6 211 210-481 55-270 (280)
6 TIGR02412 pepN_strep_liv amino 98.7 5.9E-07 1.3E-11 108.1 21.8 204 1-269 388-596 (831)
7 TIGR02270 conserved hypothetic 98.4 1.8E-05 3.9E-10 88.4 21.1 241 210-542 56-298 (410)
8 PRK09687 putative lyase; Provi 98.3 2.6E-05 5.5E-10 83.0 17.1 177 216-452 98-278 (280)
9 PRK13800 putative oxidoreducta 98.1 0.00029 6.3E-09 85.8 22.5 125 205-369 617-741 (897)
10 PRK13800 putative oxidoreducta 97.7 0.0019 4.2E-08 78.8 19.5 59 212-273 655-713 (897)
11 KOG1046 Puromycin-sensitive am 97.5 0.0041 8.9E-08 75.9 19.9 204 1-273 425-634 (882)
12 TIGR02411 leuko_A4_hydro leuko 97.4 9.7E-05 2.1E-09 86.3 4.0 67 1-71 382-452 (601)
13 PF13646 HEAT_2: HEAT repeats; 97.4 0.0011 2.4E-08 56.7 8.9 86 212-322 3-88 (88)
14 COG1413 FOG: HEAT repeat [Ener 97.4 0.016 3.5E-07 62.1 19.7 210 208-475 42-256 (335)
15 KOG1932 TATA binding protein a 97.3 3.4E-05 7.5E-10 92.7 -1.4 88 1-91 459-554 (1180)
16 PF13646 HEAT_2: HEAT repeats; 97.1 0.003 6.5E-08 54.1 8.8 86 245-367 2-88 (88)
17 TIGR02270 conserved hypothetic 96.0 0.7 1.5E-05 52.3 20.4 192 206-470 24-216 (410)
18 PF01602 Adaptin_N: Adaptin N 95.5 1 2.2E-05 51.0 19.4 276 213-542 84-371 (526)
19 COG1413 FOG: HEAT repeat [Ener 94.7 1.4 2.9E-05 47.4 16.8 178 243-481 44-230 (335)
20 smart00638 LPD_N Lipoprotein N 94.3 1.7 3.7E-05 50.5 17.4 149 310-481 410-566 (574)
21 PF01602 Adaptin_N: Adaptin N 93.7 6 0.00013 44.8 20.0 236 208-481 113-359 (526)
22 PF11940 DUF3458: Domain of un 93.3 15 0.00032 41.3 21.7 105 77-235 2-112 (367)
23 KOG0946 ER-Golgi vesicle-tethe 92.6 2.5 5.3E-05 51.0 15.0 232 195-472 107-359 (970)
24 PTZ00429 beta-adaptin; Provisi 90.3 46 0.001 40.8 22.9 64 208-273 99-169 (746)
25 KOG0567 HEAT repeat-containing 88.2 21 0.00045 38.6 15.8 71 212-288 39-109 (289)
26 KOG2171 Karyopherin (importin) 87.2 24 0.00052 44.4 17.7 76 208-290 347-430 (1075)
27 PF01347 Vitellogenin_N: Lipop 87.0 0.7 1.5E-05 54.0 4.6 146 312-480 450-609 (618)
28 smart00567 EZ_HEAT E-Z type HE 85.1 0.79 1.7E-05 32.3 2.4 28 258-289 1-28 (30)
29 PF03130 HEAT_PBS: PBS lyase H 82.2 1.7 3.8E-05 30.4 3.1 26 260-289 1-26 (27)
30 smart00638 LPD_N Lipoprotein N 79.7 1.3E+02 0.0028 35.1 20.6 172 258-472 340-523 (574)
31 PF02985 HEAT: HEAT repeat; I 78.9 2.7 5.8E-05 30.1 3.3 26 245-272 3-28 (31)
32 KOG2259 Uncharacterized conser 75.4 12 0.00027 44.7 9.0 163 243-422 374-561 (823)
33 PTZ00429 beta-adaptin; Provisi 73.4 63 0.0014 39.7 14.6 179 242-456 105-285 (746)
34 KOG2973 Uncharacterized conser 72.4 1.3E+02 0.0028 33.5 15.2 283 217-541 11-316 (353)
35 PF13513 HEAT_EZ: HEAT-like re 71.6 12 0.00026 29.6 5.6 44 226-271 4-55 (55)
36 KOG1240 Protein kinase contain 71.4 2.8E+02 0.0062 36.0 19.4 299 211-551 425-742 (1431)
37 KOG0567 HEAT repeat-containing 68.4 18 0.00039 39.1 7.6 108 191-327 142-250 (289)
38 KOG2171 Karyopherin (importin) 67.8 3.5E+02 0.0077 34.7 22.8 174 207-415 3-187 (1075)
39 PLN03200 cellulose synthase-in 67.8 4.7E+02 0.01 36.1 22.7 278 211-543 449-767 (2102)
40 KOG2259 Uncharacterized conser 65.7 3.2E+02 0.007 33.4 19.6 315 217-548 206-585 (823)
41 KOG4653 Uncharacterized conser 65.6 1.9E+02 0.0041 36.2 15.9 282 186-494 626-967 (982)
42 PLN03200 cellulose synthase-in 60.3 5.9E+02 0.013 35.3 20.4 73 213-288 492-573 (2102)
43 PF01347 Vitellogenin_N: Lipop 59.5 1.7E+02 0.0037 34.3 14.4 189 310-535 377-584 (618)
44 PF10508 Proteasom_PSMB: Prote 57.4 1.9E+02 0.0041 33.7 14.0 219 207-454 117-364 (503)
45 PF13513 HEAT_EZ: HEAT-like re 56.9 19 0.00042 28.4 4.2 17 258-274 1-17 (55)
46 PF12755 Vac14_Fab1_bd: Vacuol 55.4 40 0.00087 30.7 6.5 42 438-481 38-85 (97)
47 KOG1241 Karyopherin (importin) 52.9 4E+02 0.0087 33.1 15.6 214 219-455 11-245 (859)
48 smart00567 EZ_HEAT E-Z type HE 52.4 22 0.00047 24.9 3.4 29 224-254 2-30 (30)
49 KOG1047 Bifunctional leukotrie 51.4 20 0.00043 42.2 4.8 62 2-67 392-457 (613)
50 PF06685 DUF1186: Protein of u 49.7 1.4E+02 0.003 32.0 10.4 141 314-478 19-169 (249)
51 PF12348 CLASP_N: CLASP N term 49.0 2.9E+02 0.0063 27.8 12.4 54 398-456 105-160 (228)
52 PF10508 Proteasom_PSMB: Prote 48.4 5E+02 0.011 30.2 22.1 216 220-460 88-323 (503)
53 KOG1824 TATA-binding protein-i 48.0 7.1E+02 0.015 31.9 19.6 183 253-479 341-535 (1233)
54 KOG0166 Karyopherin (importin) 46.7 2.7E+02 0.0059 32.9 12.9 207 210-456 111-351 (514)
55 PF12719 Cnd3: Nuclear condens 44.3 3.1E+02 0.0068 29.4 12.3 129 398-537 38-182 (298)
56 COG5240 SEC21 Vesicle coat com 43.3 3.6E+02 0.0079 32.6 13.0 51 400-451 500-550 (898)
57 KOG1240 Protein kinase contain 43.2 2.6E+02 0.0056 36.3 12.5 181 332-535 440-641 (1431)
58 PF06685 DUF1186: Protein of u 42.1 1.1E+02 0.0024 32.7 8.3 78 310-399 126-203 (249)
59 PF07735 FBA_2: F-box associat 41.4 10 0.00023 31.5 0.4 23 46-69 44-66 (70)
60 PF12348 CLASP_N: CLASP N term 41.4 2.3E+02 0.0049 28.6 10.2 134 398-538 64-204 (228)
61 PF11865 DUF3385: Domain of un 39.9 2.3E+02 0.0049 28.0 9.6 33 243-276 11-43 (160)
62 KOG1824 TATA-binding protein-i 36.7 1E+03 0.023 30.6 17.4 112 360-478 192-313 (1233)
63 KOG1061 Vesicle coat complex A 36.6 9.2E+02 0.02 29.9 17.2 118 394-516 320-448 (734)
64 KOG4535 HEAT and armadillo rep 36.4 16 0.00034 42.5 0.9 69 242-322 573-649 (728)
65 PF04826 Arm_2: Armadillo-like 36.3 5.4E+02 0.012 27.5 12.4 102 210-325 14-123 (254)
66 KOG2025 Chromosome condensatio 34.9 2.7E+02 0.0057 34.4 10.5 84 396-481 94-181 (892)
67 COG3975 Predicted protease wit 34.8 55 0.0012 38.5 4.9 56 7-67 377-432 (558)
68 cd00020 ARM Armadillo/beta-cat 32.7 2.7E+02 0.0059 24.1 8.2 63 243-325 8-77 (120)
69 cd00020 ARM Armadillo/beta-cat 32.5 2.9E+02 0.0062 23.9 8.3 62 212-275 10-80 (120)
70 KOG1062 Vesicle coat complex A 32.3 4.5E+02 0.0097 32.8 11.9 150 381-541 103-264 (866)
71 PF12719 Cnd3: Nuclear condens 32.1 2.7E+02 0.0059 29.8 9.5 100 441-544 41-149 (298)
72 KOG1822 Uncharacterized conser 30.3 1.5E+03 0.032 31.4 16.6 152 316-481 851-1018(2067)
73 PF11864 DUF3384: Domain of un 30.1 2.8E+02 0.0061 31.9 9.7 39 434-472 36-75 (464)
74 KOG2062 26S proteasome regulat 29.8 5.2E+02 0.011 32.2 11.8 30 318-350 400-429 (929)
75 PF03130 HEAT_PBS: PBS lyase H 29.4 1.1E+02 0.0023 21.3 3.9 26 313-344 1-26 (27)
76 PF11864 DUF3384: Domain of un 28.6 9.5E+02 0.021 27.6 20.2 79 463-544 250-335 (464)
77 PF12717 Cnd1: non-SMC mitotic 26.4 2.8E+02 0.0061 27.4 7.9 16 442-457 3-18 (178)
78 cd00870 PI3Ka_III Phosphoinosi 26.1 3.5E+02 0.0076 27.1 8.4 85 225-317 62-147 (166)
79 COG5215 KAP95 Karyopherin (imp 25.6 9.1E+02 0.02 29.4 12.5 206 220-492 16-249 (858)
80 PHA01816 hypothetical protein 23.2 96 0.0021 29.7 3.6 33 318-354 68-100 (160)
81 cd07064 AlkD_like_1 A new stru 22.4 3.3E+02 0.0072 27.9 7.7 29 309-340 162-190 (208)
82 PF12755 Vac14_Fab1_bd: Vacuol 20.7 4.2E+02 0.0091 24.1 7.1 29 243-273 28-56 (97)
83 PF05817 Ribophorin_II: Oligos 20.5 1.6E+03 0.034 27.4 13.8 188 332-541 69-270 (636)
No 1
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=2e-105 Score=920.38 Aligned_cols=519 Identities=32% Similarity=0.532 Sum_probs=452.3
Q ss_pred ccChHHHHHHHHHHHHhhcCCC-CCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEEEeCCccEEEEE
Q 005234 5 QMGSNFFRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELA 83 (707)
Q Consensus 5 ~iG~e~F~rvL~k~L~~A~~~~-~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkKr~~VEL~ 83 (707)
.-|.-...+++++++.+.|+++ .++.++++.|+++|+.++.. .++.||++|||+.|+|.++++++||+|++.||+.
T Consensus 441 ~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~---~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~ 517 (1180)
T KOG1932|consen 441 LSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM---LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMG 517 (1180)
T ss_pred cChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh---HHHHHHHHHHhccCCeeEEEEEEEeeccccccHH
Confidence 3466778899999999999887 78889999999999988742 2699999999999999999999999999999999
Q ss_pred EEeccC-CCCCC--CCC----cccC-----CCCCCCCCCCccceeEEEEEEEEcCceEEEEecccCCCcceEEEEeccch
Q 005234 84 VLRDCT-VKPDS--RTP----VLSS-----NTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSK 151 (707)
Q Consensus 84 IkQ~q~-~~~~~--~~~----~~~~-----~~~~~~~~~~~~FtGPltIRIhE~DGtyeH~V~~i~~d~~~k~eIp~nsK 151 (707)
|.|-.. +..++ ..+ ..++ ++|-. .+.+.|+|||||||||.||||+|+++ +++.+++.|||||||
T Consensus 518 i~Q~v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~--~g~~~~~GpmtIrv~ElDGtfeH~lq--i~~~~~k~dI~chsK 593 (1180)
T KOG1932|consen 518 IDQWVRTGGHAPFSVFSDFNRKRNALEHEIKQDYT--AGNEKYTGPMTIRVQELDGTFEHTLQ--IDGDFTKLDIQCHSK 593 (1180)
T ss_pred HHHHhhhccccceeeecccchhhhhhhhhcccccc--CCCceeccceEEEEEeecCcceeeEE--ecCcccccceeeccc
Confidence 999322 21111 111 1111 12111 22356999999999999999999985 678899999999999
Q ss_pred hhHHhhcCCCCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHHHHHHHHhhCCChHHHHHHHH
Q 005234 152 LAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIA 231 (707)
Q Consensus 152 ~k~rR~~K~Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~Mw~sQLq~DrDVvAQlEAI~ 231 (707)
+|++|+||.+..+|||+++|. ++|| .++|++|||+|||+||||+|+++||+|||++||++||||+||+|||+
T Consensus 594 ---~R~~kkKk~~l~sgEE~e~dl-~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~ 665 (1180)
T KOG1932|consen 594 ---SRRQKKKKVPLMSGEEIEMDL-TNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIE 665 (1180)
T ss_pred ---ccccCCcCCCCCChhhhcccc-cccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHH
Confidence 567888999999999999884 4665 38999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHH
Q 005234 232 ALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEY 311 (707)
Q Consensus 232 aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~Y 311 (707)
+|++.|++ ..+++|+|+|.|++||||||++||+||+++++++.+|.|++||+++|++.||+.+++|||||||+||++|
T Consensus 666 ~le~~p~~--~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Y 743 (1180)
T KOG1932|consen 666 SLEALPST--ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEY 743 (1180)
T ss_pred HHHcCCcc--hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHH
Confidence 99999987 4779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccchH-------------H
Q 005234 312 FVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSIL-------------F 378 (707)
Q Consensus 312 fVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~~-------------~ 378 (707)
|||||||.|++.+|+.+|+||++|++||||||||||||+|.|||.||+|+||+||+...++..+.. +
T Consensus 744 fvq~~iP~a~a~lR~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~ 823 (1180)
T KOG1932|consen 744 FVQCAIPVAFASLRGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRD 823 (1180)
T ss_pred HHHHhhHHHHHHhccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhH
Confidence 999999999999999999999999999999999999999999999999999999999876644322 2
Q ss_pred HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhcc
Q 005234 379 LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHC 458 (707)
Q Consensus 379 l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~ 458 (707)
...+++|++|+|++|+++|||.++|+++||.++.+++ ..|++|.++ ..+..|+.+|.+.++|++|++++++++..
T Consensus 824 ~~~~~~ei~r~L~~e~l~pS~k~ii~~~~l~~~~~l~--k~~hl~s~p--~~~~~~a~~~~~vd~r~~a~~~~v~~~~~- 898 (1180)
T KOG1932|consen 824 VRVLIDEITRLLNMEKLMPSFKHIIKVSALKAIRELQ--KSGHLPSLP--ELLESYAEEGSFVDVRICAEELNVDLGGV- 898 (1180)
T ss_pred HHHHHHHHHHHHHHHhhchhhhceEEeeechhhhhhh--hccccccCc--hhhhccccccchhhhHHHhhhhhhhhccc-
Confidence 3458999999999999999999999999999999987 588999887 35789999999999999999999999864
Q ss_pred CChhHHHHHHHHHHhcCccchhhhHHHHHhhhHHHh-----hCCCCCCCCCCcHHHHHHHHHhccccccccchhhhhHHH
Q 005234 459 NGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQI-----KGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFG 533 (707)
Q Consensus 459 ~g~~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~l~~~~~~~~~~d~~lR~~~~~ 533 (707)
+|.-+.+.+++++++.||+|-.|+++. ++.+- ..++ ..|.++.+.+++++|.+++.....|..+||.+++
T Consensus 899 ~~~~~~l~~~leil~~~~dp~~R~~i~----~ml~~~~np~~~~~-~~s~~~~~~~~~~~~~~~~~~k~~D~~~r~~v~d 973 (1180)
T KOG1932|consen 899 DGSPDDLAYILEILENDPDPVIRHKIL----DMLSQSNNPVTKGG-TESDLLKEALVERLWKLKNLSKEPDICSRSSVLD 973 (1180)
T ss_pred CCChHHHHHHhhhcccCcchHHHHHHH----HHhhccCCceeecc-ccCccccHHHHHhhhhhhccCCCCCeEeEeehhh
Confidence 455688999999999999997665443 44443 2333 4799999999999999999989999999999988
Q ss_pred HHHHhhcCCCcccCCCCCcccccC
Q 005234 534 ILQILAGRAPTLYGVPRDKLLLLG 557 (707)
Q Consensus 534 ~~~~L~g~~~~l~g~~~~~~~~~~ 557 (707)
+ |.+|||..++.++..+
T Consensus 974 ~-------~~~L~~~~~~~~~~a~ 990 (1180)
T KOG1932|consen 974 V-------YIALFGLGRPNILGAP 990 (1180)
T ss_pred h-------hhheeecCCcccccch
Confidence 8 8899999966555444
No 2
>PRK14015 pepN aminopeptidase N; Provisional
Probab=99.75 E-value=2.2e-15 Score=179.80 Aligned_cols=175 Identities=16% Similarity=0.208 Sum_probs=144.0
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEEEeCCccEE
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIV 80 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkKr~~V 80 (707)
|||..+|++.|+++|+.|+.++. +++++|+||..++|+++ |.||.+|+ +|++++|+|.++|+..|+..++.+
T Consensus 395 MLr~~lGde~F~~gLr~Yl~~~~----~~~at~~Df~~ale~as---g~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~ 466 (875)
T PRK14015 395 MLHTLLGEEGFRKGMDLYFERHD----GQAVTCEDFVAAMEDAS---GRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTY 466 (875)
T ss_pred HHHHHhCHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEE
Confidence 89999999999999999999994 55999999999999999 56899986 999999999999999999888889
Q ss_pred EEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEcCceE----------EEEecccCCCcceEEEEeccc
Q 005234 81 ELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMY----------DHPILPMAGDAWQLLEIQCHS 150 (707)
Q Consensus 81 EL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~DGty----------eH~V~~i~~d~~~k~eIp~ns 150 (707)
+++++|.+...+ .......|..|++|.+...+|.. ++++ .++++.+.|.|+.-
T Consensus 467 ~ltl~Q~~~~~~--------------~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l--~l~~~~q~f~f~~~- 529 (875)
T PRK14015 467 TLTLSQSTPPTP--------------GQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVL--ELTEAEQTFTFENV- 529 (875)
T ss_pred EEEEEEeCCCCC--------------CCCCCceEEEEEEEEEEcCCCceeeccccCCccceEE--EEcCCeeEEEEcCC-
Confidence 999999864211 01122358889999988877753 4444 24666677777621
Q ss_pred hhhHHhhcCCCCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHHHHHHHHhhCCChHHHHHHH
Q 005234 151 KLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAI 230 (707)
Q Consensus 151 K~k~rR~~K~Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~Mw~sQLq~DrDVvAQlEAI 230 (707)
.+.|+ +.+|.+|--..+++.++++..+..|+++|.|..+|.||+
T Consensus 530 ----------------------------------~~~p~--~s~~r~fsapv~~~~~~~~~~l~~l~~~d~d~~~r~~a~ 573 (875)
T PRK14015 530 ----------------------------------AERPV--PSLLRGFSAPVKLEYDYSDEDLLFLMAHDSDPFNRWEAG 573 (875)
T ss_pred ----------------------------------CCCce--EEecCCCCCcEEEeCCCCHHHHHHHHhhCCChhHHHHHH
Confidence 02233 799999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 005234 231 AALEAL 236 (707)
Q Consensus 231 ~aL~~~ 236 (707)
+.|...
T Consensus 574 q~l~~~ 579 (875)
T PRK14015 574 QRLATR 579 (875)
T ss_pred HHHHHH
Confidence 998753
No 3
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=99.70 E-value=2.7e-14 Score=170.19 Aligned_cols=174 Identities=18% Similarity=0.224 Sum_probs=143.2
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEEEeCCccEE
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIV 80 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkKr~~V 80 (707)
|||..+|++.|+++|+.|+.++. .++++++||..++|+++ |.||.+|+ +|++++|+|.++|+..|+......
T Consensus 382 ML~~~LGee~F~~gLr~Yl~r~~----~~~at~~Df~~ale~as---g~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~ 453 (863)
T TIGR02414 382 MLHTLLGEEGFRKGMDLYFSRHD----GQAVTCEDFVAAMEDAS---GRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTY 453 (863)
T ss_pred HHHHHhCHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEE
Confidence 89999999999999999999994 55899999999999999 56999996 899999999999999999888889
Q ss_pred EEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEcCce-E----------EEEecccCCCcceEEEEe-c
Q 005234 81 ELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGM-Y----------DHPILPMAGDAWQLLEIQ-C 148 (707)
Q Consensus 81 EL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~DGt-y----------eH~V~~i~~d~~~k~eIp-~ 148 (707)
.++++|.+...+ .......|..|++|.+.-.+|. - ++++ .++++.++|.|+ +
T Consensus 454 ~lt~~Q~~~~~~--------------~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l--~l~~~~~~f~f~~~ 517 (863)
T TIGR02414 454 TLTVRQSTPPTP--------------GQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVL--ELTEAEQTFVFEGI 517 (863)
T ss_pred EEEEEEeCCCCC--------------CCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEE--EEccCEEEEEEcCC
Confidence 999999764211 0112345889999999977775 2 2222 245666666666 2
Q ss_pred cchhhHHhhcCCCCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHHHHHHHHhhCCChHHHHH
Q 005234 149 HSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQ 228 (707)
Q Consensus 149 nsK~k~rR~~K~Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~Mw~sQLq~DrDVvAQlE 228 (707)
. +.|+ +.++.+|--..++..++++..+..|+++|.|..+|.|
T Consensus 518 ~------------------------------------~~p~--~sl~r~fsapv~l~~~~~~~~l~~l~~~d~d~~~r~~ 559 (863)
T TIGR02414 518 A------------------------------------EKPV--PSLLRGFSAPVNLEYPYSDEDLLLLLAHDSDPFNRWE 559 (863)
T ss_pred C------------------------------------CCCe--eeecCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHH
Confidence 1 2233 8899999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 005234 229 AIAALEAL 236 (707)
Q Consensus 229 AI~aL~~~ 236 (707)
|.+.|...
T Consensus 560 a~q~l~~~ 567 (863)
T TIGR02414 560 AGQRLARR 567 (863)
T ss_pred HHHHHHHH
Confidence 99999754
No 4
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=99.23 E-value=8.8e-10 Score=132.41 Aligned_cols=235 Identities=18% Similarity=0.230 Sum_probs=159.5
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEEEeCCccEE
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIV 80 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkKr~~V 80 (707)
|||..+|+|.|++.|+.||.++. .++.++.||.+++|+++ |+|+.+||++|+..+|+|.+.|+.+++. .+
T Consensus 409 ml~~~lG~e~F~kgl~~yf~~h~----~~~~~~~Dl~~a~~~~s---g~dl~~~~~~w~~q~G~P~l~v~~~~~~---~~ 478 (859)
T COG0308 409 MLETLLGEEAFRKGLSLYFKRHA----GGNATTMDLWKALEDAS---GKDLSAFFESWLSQAGYPVLTVSVRYDD---FF 478 (859)
T ss_pred HHHHHHCHHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHh---CCcHHHHHHHHHhCCCCCceeeeeeccc---cE
Confidence 89999999999999999999984 55999999999999999 6799999999999999999999999987 56
Q ss_pred EEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEcCceEEEEecccCCCcceEEEEeccchhhHHhhcCC
Q 005234 81 ELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKP 160 (707)
Q Consensus 81 EL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~DGtyeH~V~~i~~d~~~k~eIp~nsK~k~rR~~K~ 160 (707)
.++++|..... +.....|.-|+.+...+.+|. + +. ...+..+++.+.--
T Consensus 479 ~l~~~q~~~~~----------------~~~~~~~~iPl~~~~~~~~~~--~-~~-~~~~~~~t~~~~~~----------- 527 (859)
T COG0308 479 KLTQKQFTPPG----------------QEEKRPWPIPLAIKLLDGGGV--K-VL-LLTEGEQTVTFELV----------- 527 (859)
T ss_pred EEEEEEeccCC----------------CccCceeeeccEEEecCCCCc--e-ee-eeeccceEEEEecc-----------
Confidence 67777765321 112346888999988877762 2 11 12334333443321
Q ss_pred CCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHHHHHHHHhhCCChHHHHHHHHHHHhCCCCh
Q 005234 161 KKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLS 240 (707)
Q Consensus 161 Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s 240 (707)
....++.++..+.......+.+++..|..++++++ +.+|+..+......
T Consensus 528 --------------------------~~~~~~~~~~~~~~~~~~~~~y~~~~l~~~~~~~~----~~~~~~~~~~~~~~- 576 (859)
T COG0308 528 --------------------------GIPPFPSLKVNDSAPVFYRVDYSDQSLSKLLQHDP----RLEAAQRLALVADR- 576 (859)
T ss_pred --------------------------cCCccceeeccCCccceEEEecCHHHHHHHHhhhh----hhhHHHHHhhhhhH-
Confidence 12347888889999999999999999999999988 77777776654321
Q ss_pred HHHHHHHHHHh--cCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHH
Q 005234 241 FNVVNTLNNFL--SDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIP 318 (707)
Q Consensus 241 ~~~v~aL~rtL--~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp 318 (707)
.++.+.- .-..+.++|.......+.....+.. +..++. .+|..++|.++.+..+.+.+.
T Consensus 577 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~ 637 (859)
T COG0308 577 ----RALTAAGKGSAEDKLALVSRAFNAELLYVSLEQA----FKSLLL-----------ALPSFADLEKFIDPDAIDQLR 637 (859)
T ss_pred ----HHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHH----HHHHHH-----------hcccchhhhhhcCHHHHHHHH
Confidence 2222211 1133466666655555444333211 122221 355556554444555555666
Q ss_pred HHhhcccc
Q 005234 319 HAVAMVRA 326 (707)
Q Consensus 319 ~ALa~vRd 326 (707)
.++...+.
T Consensus 638 ~~l~~~~~ 645 (859)
T COG0308 638 DALVRLGA 645 (859)
T ss_pred HHHHHHHH
Confidence 66665554
No 5
>PRK09687 putative lyase; Provisional
Probab=98.78 E-value=8.1e-07 Score=94.30 Aligned_cols=211 Identities=16% Similarity=0.058 Sum_probs=147.3
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHhCCCCh---HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccc--hHHHH
Q 005234 210 VQMWINQLEKDGDVVAQAQAIAALEALPHLS---FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWA--GLLHL 284 (707)
Q Consensus 210 d~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s---~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~--Gl~~L 284 (707)
.+..+.+|.++.|...|..|+.+|+..+.+. ..+...|...+.++. =+.||..|+.+|+.+......|. .+..|
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~-d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l 133 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK-SACVRASAINATGHRCKKNPLYSPKIVEQS 133 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC-CHHHHHHHHHHHhcccccccccchHHHHHH
Confidence 5566777888999999999999999876431 246677777744333 59999999999999876654441 12333
Q ss_pred HHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHH
Q 005234 285 VKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQ 364 (707)
Q Consensus 285 ik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ 364 (707)
..+..+ + +..||.+.+.||+.+++ +++...|+.+|+.+ |.+-+..++.
T Consensus 134 ~~~~~D----~--------------~~~VR~~a~~aLg~~~~------~~ai~~L~~~L~d~--------~~~VR~~A~~ 181 (280)
T PRK09687 134 QITAFD----K--------------STNVRFAVAFALSVIND------EAAIPLLINLLKDP--------NGDVRNWAAF 181 (280)
T ss_pred HHHhhC----C--------------CHHHHHHHHHHHhccCC------HHHHHHHHHHhcCC--------CHHHHHHHHH
Confidence 333322 1 23499999999999985 57889999999843 2334489999
Q ss_pred HhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHH
Q 005234 365 SVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVR 444 (707)
Q Consensus 365 ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vR 444 (707)
|||.+... + ..+++.|...+. ..+..|..+|+.+|.+++ . +.++..+..+...+. +|
T Consensus 182 aLg~~~~~--~----~~~~~~L~~~L~------D~~~~VR~~A~~aLg~~~----~----~~av~~Li~~L~~~~---~~ 238 (280)
T PRK09687 182 ALNSNKYD--N----PDIREAFVAMLQ------DKNEEIRIEAIIGLALRK----D----KRVLSVLIKELKKGT---VG 238 (280)
T ss_pred HHhcCCCC--C----HHHHHHHHHHhc------CCChHHHHHHHHHHHccC----C----hhHHHHHHHHHcCCc---hH
Confidence 99987432 1 235566777664 668899999999998864 1 223334444555543 79
Q ss_pred HHHHHHhhhhhhccCChhHHHHHHHHHHhcCccchhh
Q 005234 445 VEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 445 iaA~~aL~~l~~~~~g~~~al~~~l~~l~~dp~~r~~ 481 (707)
..|+++|+.++. ..++-.+...+..+|+.+++
T Consensus 239 ~~a~~ALg~ig~-----~~a~p~L~~l~~~~~d~~v~ 270 (280)
T PRK09687 239 DLIIEAAGELGD-----KTLLPVLDTLLYKFDDNEII 270 (280)
T ss_pred HHHHHHHHhcCC-----HhHHHHHHHHHhhCCChhHH
Confidence 999999999863 25777777778778877655
No 6
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=98.75 E-value=5.9e-07 Score=108.08 Aligned_cols=204 Identities=12% Similarity=0.063 Sum_probs=123.7
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEEEeCCccEE
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIV 80 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkKr~~V 80 (707)
|||..+|++.|+++|+.|+.++. .++++|+||..++++++ |+||++||++|++++|+|.++|+..++.. .+
T Consensus 388 mL~~~lGee~F~~glr~Yl~~~~----~~nat~~Dl~~~l~~~s---g~dl~~~~~~W~~~~G~P~l~v~~~~~~~--~~ 458 (831)
T TIGR02412 388 QLVAWVGEEAFFAGVNAYFKRHA----FGNATLDDLIDSLAKAS---GRDLSAWSDAWLETAGVNTLTPEITTDGG--VV 458 (831)
T ss_pred HHHHHHCHHHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHh---CCCHHHHHHHHHcCCCCceEEEEEEECCC--eE
Confidence 89999999999999999999994 55899999999999999 57999999999999999999999888653 33
Q ss_pred EEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEcCceEEEEecccCCCcceEEEEeccchhhHHhhcCC
Q 005234 81 ELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKP 160 (707)
Q Consensus 81 EL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~DGtyeH~V~~i~~d~~~k~eIp~nsK~k~rR~~K~ 160 (707)
. .+.|.+.. ....+.-|++ +...++...+. ....++.+..+. .
T Consensus 459 ~-~~~~~~~~-------------------~~~~~~ip~~--~~~~~~~~~~~--------~~~~~~~~~~~~----~--- 501 (831)
T TIGR02412 459 S-ALYPESSG-------------------PPRPHRIAIG--LYDLDRDDLRR--------TTLVPLTISGER----T--- 501 (831)
T ss_pred E-EEEEecCC-------------------CCCCeeEEEe--eeecCCCccee--------eeEEEEEEecCc----e---
Confidence 3 12222211 0012333443 33222211110 001122221110 0
Q ss_pred CCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCH-HHHHHHHhhCCChHHHHHHH---HHHHhC
Q 005234 161 KKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPV-QMWINQLEKDGDVVAQAQAI---AALEAL 236 (707)
Q Consensus 161 Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd-~Mw~sQLq~DrDVvAQlEAI---~aL~~~ 236 (707)
...... ...+..||.++.+..=-++|..+... .....+|....+.+.|..-+ -+|.+.
T Consensus 502 -~~~~~~-----------------~~~~~~~v~~N~~~~gyyrv~yd~~~~~~l~~~l~~~~~~~~R~~l~~d~~~~~~~ 563 (831)
T TIGR02412 502 -AVPQLV-----------------GKRAPALVLLNDDDLTYAKVRLDPTSFDTVLAALSKLPDPLSRAVVWASLWDSVRD 563 (831)
T ss_pred -eehhhc-----------------CCCCCCEEEEeCCCcEEEEEECCHHHHHHHHHHhhhCCChhhHHHHHHHHHHHHHc
Confidence 000000 01234699999999888888776432 33455665555677776444 344444
Q ss_pred CCCh-HHHHHHHHHHhcCCCccHHHHHHHHHHHh
Q 005234 237 PHLS-FNVVNTLNNFLSDSKAFWRVRIEAAYALA 269 (707)
Q Consensus 237 p~~s-~~~v~aL~rtL~D~ryFygVR~eAA~ALa 269 (707)
+..+ ..+...+.+.|.++. -|-|-..+...|.
T Consensus 564 g~~~~~~~l~l~~~~l~~E~-~~~v~~~~~~~l~ 596 (831)
T TIGR02412 564 GELSPDDYLSTVFAHVPSET-DYAVVQQVLSQLL 596 (831)
T ss_pred CCCCHHHHHHHHHHhccCCC-chHHHHHHHHHHH
Confidence 4322 234555557777765 5666555655555
No 7
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.44 E-value=1.8e-05 Score=88.42 Aligned_cols=241 Identities=13% Similarity=-0.003 Sum_probs=162.3
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 005234 210 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 289 (707)
Q Consensus 210 d~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk 289 (707)
....+..|..|.+..-...|+.+|...... .++..|.++|.|. =-+||.+||.+|+.+..+.. ...|+..++
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~~~--~~~~~L~~~L~d~--~~~vr~aaa~ALg~i~~~~a----~~~L~~~L~ 127 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQEDA--LDLRSVLAVLQAG--PEGLCAGIQAALGWLGGRQA----EPWLEPLLA 127 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccCCh--HHHHHHHHHhcCC--CHHHHHHHHHHHhcCCchHH----HHHHHHHhc
Confidence 345677887777777777888888866543 3578999999887 56799999999999988765 467777775
Q ss_pred hccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHH-HHHHHHhhc
Q 005234 290 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWL-AALVQSVGE 368 (707)
Q Consensus 290 ~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~Yv-A~lI~ALg~ 368 (707)
+ . +-+|+.++..|++..+ .+ ..+.|+.+|+ +.++|+ ++.+.+||.
T Consensus 128 ~-------~-----------~p~vR~aal~al~~r~-~~------~~~~L~~~L~---------d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 128 A-------S-----------EPPGRAIGLAALGAHR-HD------PGPALEAALT---------HEDALVRAAALRALGE 173 (410)
T ss_pred C-------C-----------ChHHHHHHHHHHHhhc-cC------hHHHHHHHhc---------CCCHHHHHHHHHHHHh
Confidence 4 1 2349999998888744 22 2345666666 335665 999999998
Q ss_pred ccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhc-ccCCCCcHHHHHHH
Q 005234 369 LEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKP-FRDFNTIWQVRVEA 447 (707)
Q Consensus 369 ~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~-yt~~g~~~~vRiaA 447 (707)
+... ..+..|..+ ..+++..|..+++.++..++ . +.....+.. |+..|.+...|+++
T Consensus 174 l~~~--------~a~~~L~~a------l~d~~~~VR~aA~~al~~lG-----~---~~A~~~l~~~~~~~g~~~~~~l~~ 231 (410)
T TIGR02270 174 LPRR--------LSESTLRLY------LRDSDPEVRFAALEAGLLAG-----S---RLAWGVCRRFQVLEGGPHRQRLLV 231 (410)
T ss_pred hccc--------cchHHHHHH------HcCCCHHHHHHHHHHHHHcC-----C---HhHHHHHHHHHhccCccHHHHHHH
Confidence 7532 122334444 44899999999999998864 1 222233444 89999999999988
Q ss_pred HHHhhhhhhccCChhHHHHHHHHHHhcCccchhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHHHHhccccccccchh
Q 005234 448 SRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFL 527 (707)
Q Consensus 448 ~~aL~~l~~~~~g~~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~d~~l 527 (707)
+.++. |...++.++...+ .|+..+.- ++..+ + . +.+|..+.-|-..++ |..+
T Consensus 232 ~lal~-------~~~~a~~~L~~ll-~d~~vr~~------a~~Al---G--~----lg~p~av~~L~~~l~-----d~~~ 283 (410)
T TIGR02270 232 LLAVA-------GGPDAQAWLRELL-QAAATRRE------ALRAV---G--L----VGDVEAAPWCLEAMR-----EPPW 283 (410)
T ss_pred HHHhC-------CchhHHHHHHHHh-cChhhHHH------HHHHH---H--H----cCCcchHHHHHHHhc-----CcHH
Confidence 87776 2346888777777 45554321 11111 1 1 334555555555544 6668
Q ss_pred hhhHHHHHHHhhcCC
Q 005234 528 RHHLFGILQILAGRA 542 (707)
Q Consensus 528 R~~~~~~~~~L~g~~ 542 (707)
|-.+-..+..+.|..
T Consensus 284 aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 284 ARLAGEAFSLITGMD 298 (410)
T ss_pred HHHHHHHHHHhhCCC
Confidence 888888877777753
No 8
>PRK09687 putative lyase; Provisional
Probab=98.29 E-value=2.6e-05 Score=82.97 Aligned_cols=177 Identities=14% Similarity=0.040 Sum_probs=126.6
Q ss_pred HHhhCCChHHHHHHHHHHHhCCCC----hHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhc
Q 005234 216 QLEKDGDVVAQAQAIAALEALPHL----SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 291 (707)
Q Consensus 216 QLq~DrDVvAQlEAI~aL~~~p~~----s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~ 291 (707)
-+.+|+|..-|..|+.+|+..... ...+...|..++.|+ .|+||..|+.+|+++.+++. ++.|+++.++
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~~a----i~~L~~~L~d- 170 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK--STNVRFAVAFALSVINDEAA----IPLLINLLKD- 170 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCHHH----HHHHHHHhcC-
Confidence 347999999999999999987421 224567788888888 89999999999999987653 7888888754
Q ss_pred cCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccc
Q 005234 292 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 371 (707)
Q Consensus 292 ~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~ 371 (707)
.++.|+.+...||+.++. ..+++...|+.+|.. .|..-+.+++.+||.+.-
T Consensus 171 -----------------~~~~VR~~A~~aLg~~~~----~~~~~~~~L~~~L~D--------~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 171 -----------------PNGDVRNWAAFALNSNKY----DNPDIREAFVAMLQD--------KNEEIRIEAIIGLALRKD 221 (280)
T ss_pred -----------------CCHHHHHHHHHHHhcCCC----CCHHHHHHHHHHhcC--------CChHHHHHHHHHHHccCC
Confidence 234699999999999943 235788999999953 234445899999998642
Q ss_pred cccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHh
Q 005234 372 GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRAL 451 (707)
Q Consensus 372 ~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL 451 (707)
..++..|.++++-+. +.+.++++|.+++. ......+.+......-..||.+|.++|
T Consensus 222 --------~~av~~Li~~L~~~~--------~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 222 --------KRVLSVLIKELKKGT--------VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred --------hhHHHHHHHHHcCCc--------hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 245666777776321 46788888888752 122233333333222468999999887
Q ss_pred h
Q 005234 452 L 452 (707)
Q Consensus 452 ~ 452 (707)
-
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 4
No 9
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.08 E-value=0.00029 Score=85.84 Aligned_cols=125 Identities=19% Similarity=0.091 Sum_probs=87.2
Q ss_pred eccCCHHHHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHH
Q 005234 205 HFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHL 284 (707)
Q Consensus 205 ~~~QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~L 284 (707)
.+..|.-.+..++-.|+|..-|..|+.+|++...+ .++..|.+.|.|+ ...||..|+.+|+.+...... ...|
T Consensus 617 ~l~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~--~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~~~---~~~L 689 (897)
T PRK13800 617 ALDAPSVAELAPYLADPDPGVRRTAVAVLTETTPP--GFGPALVAALGDG--AAAVRRAAAEGLRELVEVLPP---APAL 689 (897)
T ss_pred hccchhHHHHHHHhcCCCHHHHHHHHHHHhhhcch--hHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccCc---hHHH
Confidence 34666555555656899999999999999998764 4778999999888 899999999999988532111 2456
Q ss_pred HHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHH
Q 005234 285 VKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQ 364 (707)
Q Consensus 285 ik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ 364 (707)
+.++++ .+..||.+++.+|+.++..+ + ..|+..|+. .|..-+.+++.
T Consensus 690 ~~~L~~------------------~d~~VR~~A~~aL~~~~~~~---~----~~l~~~L~D--------~d~~VR~~Av~ 736 (897)
T PRK13800 690 RDHLGS------------------PDPVVRAAALDVLRALRAGD---A----ALFAAALGD--------PDHRVRIEAVR 736 (897)
T ss_pred HHHhcC------------------CCHHHHHHHHHHHHhhccCC---H----HHHHHHhcC--------CCHHHHHHHHH
Confidence 666543 24468888888888876422 2 245556653 23444477888
Q ss_pred Hhhcc
Q 005234 365 SVGEL 369 (707)
Q Consensus 365 ALg~~ 369 (707)
+|+.+
T Consensus 737 aL~~~ 741 (897)
T PRK13800 737 ALVSV 741 (897)
T ss_pred HHhcc
Confidence 88864
No 10
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.66 E-value=0.0019 Score=78.81 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=40.2
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccc
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 273 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~ 273 (707)
.++.++-.|.|..-|..|+.+|.+..... ....+|...|.++ -++||..|+.+|+....
T Consensus 655 ~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~~~~~L~~~L~~~--d~~VR~~A~~aL~~~~~ 713 (897)
T PRK13800 655 PALVAALGDGAAAVRRAAAEGLRELVEVL-PPAPALRDHLGSP--DPVVRAAALDVLRALRA 713 (897)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcc-CchHHHHHHhcCC--CHHHHHHHHHHHHhhcc
Confidence 34445668888888888888887653210 1235677777765 56888888888887653
No 11
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0041 Score=75.94 Aligned_cols=204 Identities=17% Similarity=0.254 Sum_probs=127.5
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEEEeCCccEE
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIV 80 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkKr~~V 80 (707)
||++.+|++.|.++|+.||.++. .++.++.||-.+++... +.|+..|.+.|....|.|.++|+-.++
T Consensus 425 ML~~~lGe~~F~~gi~~yL~~~~----y~na~~~DLw~~l~~~~---~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~------ 491 (882)
T KOG1046|consen 425 MLESLLGEEVFRKGLRSYLKKHQ----YSNAKTEDLWDALEEGS---GLDVSELMDTWTKQMGYPVVTVERNGD------ 491 (882)
T ss_pred HHHHHHCHHHHHHHHHHHHHHhc----cCCCCchhHHHHHhccC---CCCHHHHHhhhhcCCCCceEEEEecCC------
Confidence 89999999999999999999984 55899999999998333 679999999999999999999998776
Q ss_pred EEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEcCceEEEEecccCCCcceEEEEeccchhhHHhhcCC
Q 005234 81 ELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKP 160 (707)
Q Consensus 81 EL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~DGtyeH~V~~i~~d~~~k~eIp~nsK~k~rR~~K~ 160 (707)
+++++|.--... .+ ..+....|.-|+++..........+-+ ......+.
T Consensus 492 ~~~l~Q~rf~~~----------~~--~~~~~~~w~iPl~~~~~~~~~~~~~~~----~~~~~~~~--------------- 540 (882)
T KOG1046|consen 492 SLTLTQERFLSD----------PD--PSEDNYLWWIPLTYTTSGSGSVPKFWL----SSKSTTIK--------------- 540 (882)
T ss_pred EEEEehhhhccC----------CC--ccccCcccceeEEEEcCCCCccceeee----cCCCccee---------------
Confidence 667777542210 00 011234566677665442221111100 00000000
Q ss_pred CCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHH-HHHHHHhh-C-CChHHHHHH---HHHHH
Q 005234 161 KKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQ-MWINQLEK-D-GDVVAQAQA---IAALE 234 (707)
Q Consensus 161 Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~-Mw~sQLq~-D-rDVvAQlEA---I~aL~ 234 (707)
...+.+||.++++..=..+|..+.-.+ ..+.||.. + =.+.-|..= +-+|+
T Consensus 541 ------------------------l~~~~~wi~~N~~~~g~yRV~Yd~~~w~~l~~~l~~~~~~~~~~Ra~li~D~~~la 596 (882)
T KOG1046|consen 541 ------------------------LPESDQWIKVNLEQTGYYRVNYDDENWALLIEQLKNHESLSVIDRAQLINDAFALA 596 (882)
T ss_pred ------------------------cCCCCeEEEEeCCcceEEEEEeCHHHHHHHHHHHhhcCccCHhHHHHHHHHHHHHH
Confidence 012236999999998888887665433 33445533 1 122322211 13344
Q ss_pred hCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccc
Q 005234 235 ALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 273 (707)
Q Consensus 235 ~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~ 273 (707)
.....+....-.|..-+.++. .|.+...|+.+|..+..
T Consensus 597 ~~~~~~~~~~l~l~~~l~~e~-~~~p~~~~~~~l~~~~~ 634 (882)
T KOG1046|consen 597 RAGRLPYSIALNLISYLKNET-DYVPWSAAIRSLYKLHS 634 (882)
T ss_pred hcCCCchHHHHHHHHHHhccc-ccchHHHHHHHHHHHhh
Confidence 443333334444777777775 88888888777777765
No 12
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=97.43 E-value=9.7e-05 Score=86.33 Aligned_cols=67 Identities=19% Similarity=0.359 Sum_probs=56.4
Q ss_pred ChhhccC-hHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCC--CccChhhH-HhhhccCCCcceEEEEE
Q 005234 1 MLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNL--ERPFLKEF-FPRWVGTCGCPVLRMGF 71 (707)
Q Consensus 1 MLek~iG-~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~--~g~dL~~F-FdQWVygsG~P~f~Vs~ 71 (707)
|||+.+| ++.|++.|+.|+..+ ..++++|+||..++++.... .+.+++.+ |++|++++|.|.+++.+
T Consensus 382 mL~~~lG~~~~F~~~lr~Yl~~~----~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~ 452 (601)
T TIGR02411 382 YLEQLLGGPAVFDPFLKHYFKKF----AYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNF 452 (601)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCC
Confidence 8999999 999999999999998 45699999999999876421 13578776 99999999999876554
No 13
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.37 E-value=0.0011 Score=56.75 Aligned_cols=86 Identities=28% Similarity=0.296 Sum_probs=69.8
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhc
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 291 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~ 291 (707)
..+..|..|+|..-|.+|+..|++..++ .+...|...+.|+ .+.||.+|+.+|+.+.+++ ..+.|.+++++-
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~~~--~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~~~----~~~~L~~~l~~~ 74 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELGDP--EAIPALIELLKDE--DPMVRRAAARALGRIGDPE----AIPALIKLLQDD 74 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCTHH--HHHHHHHHHHTSS--SHHHHHHHHHHHHCCHHHH----THHHHHHHHTC-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCH--hHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHH----HHHHHHHHHcCC
Confidence 4567788999999999999999988754 6789999999887 8999999999999998765 378888877641
Q ss_pred cCCCCCCCCCCCCCCChhHHHHHHHHHHHhh
Q 005234 292 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVA 322 (707)
Q Consensus 292 ~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa 322 (707)
.+..|+.+...|||
T Consensus 75 -----------------~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 75 -----------------DDEVVREAAAEALG 88 (88)
T ss_dssp -----------------SSHHHHHHHHHHHH
T ss_pred -----------------CcHHHHHHHHhhcC
Confidence 13457888888875
No 14
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.37 E-value=0.016 Score=62.08 Aligned_cols=210 Identities=24% Similarity=0.215 Sum_probs=139.0
Q ss_pred CCHHHHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHH
Q 005234 208 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKF 287 (707)
Q Consensus 208 QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~ 287 (707)
.+....+.++-.++|..-+..|...++..+.. .++..|.+.+.|.. +.||-.|+.+|+....++. .+.|++.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~--~av~~l~~~l~d~~--~~vr~~a~~aLg~~~~~~a----~~~li~~ 113 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELGSE--EAVPLLRELLSDED--PRVRDAAADALGELGDPEA----VPPLVEL 113 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhchH--HHHHHHHHHhcCCC--HHHHHHHHHHHHccCChhH----HHHHHHH
Confidence 34444444555677999999999999988864 57888999999985 4999999999999998875 7888888
Q ss_pred HHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCC---CChh--HHHHHH
Q 005234 288 YKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNP---YSDV--FWLAAL 362 (707)
Q Consensus 288 Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~---ysDs--~YvA~l 362 (707)
+.. + .+++|+.+...||+.+++.+ +..=|++++..++... . +.+. .-+.++
T Consensus 114 l~~---d--------------~~~~vR~~aa~aL~~~~~~~------a~~~l~~~l~~~~~~~-a~~~~~~~~~~~r~~a 169 (335)
T COG1413 114 LEN---D--------------ENEGVRAAAARALGKLGDER------ALDPLLEALQDEDSGS-AAAALDAALLDVRAAA 169 (335)
T ss_pred HHc---C--------------CcHhHHHHHHHHHHhcCchh------hhHHHHHHhccchhhh-hhhhccchHHHHHHHH
Confidence 763 1 24679999999999999854 2444555555432100 0 0111 234677
Q ss_pred HHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHH
Q 005234 363 VQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQ 442 (707)
Q Consensus 363 I~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~ 442 (707)
+.+|+.+.-. ..+..+...++ +....|..++..+|.++. .+. ..+...+.. ...+..+.
T Consensus 170 ~~~l~~~~~~--------~~~~~l~~~l~------~~~~~vr~~Aa~aL~~~~---~~~---~~~~~~l~~-~~~~~~~~ 228 (335)
T COG1413 170 AEALGELGDP--------EAIPLLIELLE------DEDADVRRAAASALGQLG---SEN---VEAADLLVK-ALSDESLE 228 (335)
T ss_pred HHHHHHcCCh--------hhhHHHHHHHh------CchHHHHHHHHHHHHHhh---cch---hhHHHHHHH-HhcCCCHH
Confidence 8888865422 22233444443 233388888888888875 221 112122222 34456789
Q ss_pred HHHHHHHHhhhhhhccCChhHHHHHHHHHHhcC
Q 005234 443 VRVEASRALLDLEFHCNGIDSALSLFIKSVEEE 475 (707)
Q Consensus 443 vRiaA~~aL~~l~~~~~g~~~al~~~l~~l~~d 475 (707)
+|.+|..+|...+.. .+...+...+..+
T Consensus 229 vr~~~~~~l~~~~~~-----~~~~~l~~~l~~~ 256 (335)
T COG1413 229 VRKAALLALGEIGDE-----EAVDALAKALEDE 256 (335)
T ss_pred HHHHHHHHhcccCcc-----hhHHHHHHHHhcc
Confidence 999999999996543 4566666666443
No 15
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=97.32 E-value=3.4e-05 Score=92.70 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=70.6
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCC--------CCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEE
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGAS--------PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFS 72 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~--------~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~ 72 (707)
|+++++|.+.|+++++|.+..+.... ..+..+|.-|... +.+..|++++.|.+|||..+||..|.|...
T Consensus 459 m~~~~i~~e~~~q~f~kv~~~~~~~~~k~~~~~Wv~~~g~~~~r~~~---~~N~k~~~Ie~~i~Q~v~~~~~A~~sv~~~ 535 (1180)
T KOG1932|consen 459 MSGNRINEELSFQVFNKVLELASKMLLKSFFQTWVYGLGVPILRLGQ---RFNVKGKDIEMGIDQWVRTGGHAPFSVFSD 535 (1180)
T ss_pred HhhccccccHHHHHHHHHHHhhhhhHHHHHHHHHHhccCCeeEEEEE---EEeeccccccHHHHHHhhhccccceeeecc
Confidence 88999999999999999999985421 2223333333332 233458899999999999999999999999
Q ss_pred EeCCccEEEEEEEeccCCC
Q 005234 73 YNKRKNIVELAVLRDCTVK 91 (707)
Q Consensus 73 FNkKr~~VEL~IkQ~q~~~ 91 (707)
||+||+.+|..++|+.++.
T Consensus 536 ~n~~rna~~~~~~qD~~~g 554 (1180)
T KOG1932|consen 536 FNRKRNALEHEIKQDYTAG 554 (1180)
T ss_pred cchhhhhhhhhccccccCC
Confidence 9999999999999987653
No 16
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.11 E-value=0.003 Score=54.06 Aligned_cols=86 Identities=27% Similarity=0.335 Sum_probs=65.2
Q ss_pred HHHHHHh-cCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 005234 245 NTLNNFL-SDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAM 323 (707)
Q Consensus 245 ~aL~rtL-~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~ 323 (707)
..|.+.| .|+ .+.||..|+.+|+.+..++. ++.|++++++ .+..||.+...||+.
T Consensus 2 ~~L~~~l~~~~--~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d------------------~~~~vr~~a~~aL~~ 57 (88)
T PF13646_consen 2 PALLQLLQNDP--DPQVRAEAARALGELGDPEA----IPALIELLKD------------------EDPMVRRAAARALGR 57 (88)
T ss_dssp HHHHHHHHTSS--SHHHHHHHHHHHHCCTHHHH----HHHHHHHHTS------------------SSHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHcCCHhH----HHHHHHHHcC------------------CCHHHHHHHHHHHHH
Confidence 4677888 455 99999999999998876653 6777777643 234599999999999
Q ss_pred ccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhh
Q 005234 324 VRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVG 367 (707)
Q Consensus 324 vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg 367 (707)
+.+ +++.+.|.+++... +|.....+++.|||
T Consensus 58 i~~------~~~~~~L~~~l~~~-------~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 58 IGD------PEAIPALIKLLQDD-------DDEVVREAAAEALG 88 (88)
T ss_dssp CHH------HHTHHHHHHHHTC--------SSHHHHHHHHHHHH
T ss_pred hCC------HHHHHHHHHHHcCC-------CcHHHHHHHHhhcC
Confidence 964 67889999988753 23444588888886
No 17
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.99 E-value=0.7 Score=52.26 Aligned_cols=192 Identities=15% Similarity=0.061 Sum_probs=125.7
Q ss_pred ccCCHHHHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhc-CCCccHHHHHHHHHHHhcccccccccchHHHH
Q 005234 206 FNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLS-DSKAFWRVRIEAAYALANTASEETDWAGLLHL 284 (707)
Q Consensus 206 ~~QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~-D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~L 284 (707)
+..|+|-|..=-+-|.-+.|+++++...+ + .....|...|. |+ -=+||..|+.+|....... ++..|
T Consensus 24 ~~~p~~~l~~la~ldeRL~AhLdgL~~~G--~----~a~~~L~~aL~~d~--~~ev~~~aa~al~~~~~~~----~~~~L 91 (410)
T TIGR02270 24 LVAPDYVLEDLAELEERLLAHVDGLVLAG--K----AATELLVSALAEAD--EPGRVACAALALLAQEDAL----DLRSV 91 (410)
T ss_pred hcCCCCCHHHHHhHHHHHHHHHHHHHHhh--H----hHHHHHHHHHhhCC--ChhHHHHHHHHHhccCChH----HHHHH
Confidence 44566644443344457778877777665 1 35678888884 44 4588999999998766544 26777
Q ss_pred HHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHH
Q 005234 285 VKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQ 364 (707)
Q Consensus 285 ik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ 364 (707)
+++..+ .+--|+.++..||+.+++ +.+...|+.+|+. +|.+-.++++.
T Consensus 92 ~~~L~d------------------~~~~vr~aaa~ALg~i~~------~~a~~~L~~~L~~--------~~p~vR~aal~ 139 (410)
T TIGR02270 92 LAVLQA------------------GPEGLCAGIQAALGWLGG------RQAEPWLEPLLAA--------SEPPGRAIGLA 139 (410)
T ss_pred HHHhcC------------------CCHHHHHHHHHHHhcCCc------hHHHHHHHHHhcC--------CChHHHHHHHH
Confidence 777653 112389999999999985 5788889999975 45677788889
Q ss_pred HhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHH
Q 005234 365 SVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVR 444 (707)
Q Consensus 365 ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vR 444 (707)
+||.-... ..+.+..+|+ -+|| -|...++.+|..++. ...+ +.+ ... ..+.-..||
T Consensus 140 al~~r~~~---------~~~~L~~~L~----d~d~--~Vra~A~raLG~l~~--~~a~--~~L----~~a-l~d~~~~VR 195 (410)
T TIGR02270 140 ALGAHRHD---------PGPALEAALT----HEDA--LVRAAALRALGELPR--RLSE--STL----RLY-LRDSDPEVR 195 (410)
T ss_pred HHHhhccC---------hHHHHHHHhc----CCCH--HHHHHHHHHHHhhcc--ccch--HHH----HHH-HcCCCHHHH
Confidence 99974321 1234555554 2344 478889999888752 1111 222 222 233557899
Q ss_pred HHHHHHhhhhhhccCChhHHHHHHHH
Q 005234 445 VEASRALLDLEFHCNGIDSALSLFIK 470 (707)
Q Consensus 445 iaA~~aL~~l~~~~~g~~~al~~~l~ 470 (707)
.+|+.+|..++. ..++..++.
T Consensus 196 ~aA~~al~~lG~-----~~A~~~l~~ 216 (410)
T TIGR02270 196 FAALEAGLLAGS-----RLAWGVCRR 216 (410)
T ss_pred HHHHHHHHHcCC-----HhHHHHHHH
Confidence 999999998753 356665565
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.48 E-value=1 Score=50.95 Aligned_cols=276 Identities=16% Similarity=0.120 Sum_probs=153.0
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhCCCCh--HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccc--h-HHHHHHH
Q 005234 213 WINQLEKDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWA--G-LLHLVKF 287 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~p~~s--~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~--G-l~~Lik~ 287 (707)
+...| .+++..-|.-|++.++....+. ......+.+.+.|+ -+-||..||.++.++....++.. + .+.|.+.
T Consensus 84 l~kdl-~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~l 160 (526)
T PF01602_consen 84 LQKDL-NSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDP--SPYVRKKAALALLKIYRKDPDLVEDELIPKLKQL 160 (526)
T ss_dssp HHHHH-CSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHH
T ss_pred HHHhh-cCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCC--chHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhh
Confidence 34444 3578889999999999876542 12345677888888 66999999999999976543321 2 3344444
Q ss_pred HHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhccc-ccCC--CChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHH
Q 005234 288 YKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR-AADN--KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQ 364 (707)
Q Consensus 288 Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vR-d~~g--~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ 364 (707)
+.+ + +.-|+.+...++..++ +.+. ..-+...+.|.+++. ..|.|-...+++
T Consensus 161 L~d----~--------------~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~--------~~~~~~q~~il~ 214 (526)
T PF01602_consen 161 LSD----K--------------DPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLS--------DPDPWLQIKILR 214 (526)
T ss_dssp TTH----S--------------SHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHT--------CCSHHHHHHHHH
T ss_pred ccC----C--------------cchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhccc--------ccchHHHHHHHH
Confidence 332 1 2358888889999992 2221 112223344444442 234565689999
Q ss_pred HhhcccccccchHHH--HHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCC-hHHHHHhhhcccCCCCcH
Q 005234 365 SVGELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIW 441 (707)
Q Consensus 365 ALg~~~~~~~~~~~l--~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~-~d~~~~ll~~yt~~g~~~ 441 (707)
.|+..... ..... ..+++.+..+++ |=+..|...|++++..+. ...+ ...+...+..+.. ....
T Consensus 215 ~l~~~~~~--~~~~~~~~~~i~~l~~~l~------s~~~~V~~e~~~~i~~l~----~~~~~~~~~~~~L~~lL~-s~~~ 281 (526)
T PF01602_consen 215 LLRRYAPM--EPEDADKNRIIEPLLNLLQ------SSSPSVVYEAIRLIIKLS----PSPELLQKAINPLIKLLS-SSDP 281 (526)
T ss_dssp HHTTSTSS--SHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHS----SSHHHHHHHHHHHHHHHT-SSSH
T ss_pred HHHhcccC--ChhhhhHHHHHHHHHHHhh------ccccHHHHHHHHHHHHhh----cchHHHHhhHHHHHHHhh-cccc
Confidence 99976532 22223 457777777776 555666778888877753 2111 1222333333333 3456
Q ss_pred HHHHHHHHHhhhhhhcc-CChhHHHHHHHHHHhcCccchhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHHHHhcccc
Q 005234 442 QVRVEASRALLDLEFHC-NGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRI 520 (707)
Q Consensus 442 ~vRiaA~~aL~~l~~~~-~g~~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 520 (707)
.+|..|+++|..+.... .... ...+-+..+..+++...+.+ ++.++..-... -+-..++.-|-....
T Consensus 282 nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~----~l~lL~~l~~~-----~n~~~Il~eL~~~l~-- 349 (526)
T PF01602_consen 282 NVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKK----ALDLLYKLANE-----SNVKEILDELLKYLS-- 349 (526)
T ss_dssp HHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHH----HHHHHHHH--H-----HHHHHHHHHHHHHHH--
T ss_pred hhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHH----HHHHHhhcccc-----cchhhHHHHHHHHHH--
Confidence 79999999999986543 1111 12223334554555433311 22222211110 011223333333331
Q ss_pred ccccchhhhhHHHHHHHhhcCC
Q 005234 521 AFNNVFLRHHLFGILQILAGRA 542 (707)
Q Consensus 521 ~~~d~~lR~~~~~~~~~L~g~~ 542 (707)
...|.-.|..++..+..++-+|
T Consensus 350 ~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 350 ELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HC--HHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhHHHHHHHHHhcc
Confidence 1235668888888887777777
No 19
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.72 E-value=1.4 Score=47.35 Aligned_cols=178 Identities=23% Similarity=0.200 Sum_probs=110.5
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhh
Q 005234 243 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVA 322 (707)
Q Consensus 243 ~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa 322 (707)
+...+.+.+.++ =+-||..|+.+|+.+..++. ++.|.+.-.+ .++.|+.+...||+
T Consensus 44 ~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~~~a----v~~l~~~l~d------------------~~~~vr~~a~~aLg 99 (335)
T COG1413 44 AADELLKLLEDE--DLLVRLSAAVALGELGSEEA----VPLLRELLSD------------------EDPRVRDAAADALG 99 (335)
T ss_pred hHHHHHHHHcCC--CHHHHHHHHHHHhhhchHHH----HHHHHHHhcC------------------CCHHHHHHHHHHHH
Confidence 567788888887 78999999999999998764 5666655432 22368999999999
Q ss_pred cccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHH-HHHHHHHhhcccccccchHHHHHHHHHHHHHHhcCc-------
Q 005234 323 MVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFW-LAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDR------- 394 (707)
Q Consensus 323 ~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~Y-vA~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~------- 394 (707)
.+.+ +++...|+.+|.. +.+.| +++++.+||.+.-.. .+..+...++-+.
T Consensus 100 ~~~~------~~a~~~li~~l~~--------d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~ 157 (335)
T COG1413 100 ELGD------PEAVPPLVELLEN--------DENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAA 157 (335)
T ss_pred ccCC------hhHHHHHHHHHHc--------CCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhh
Confidence 9875 6778888888875 34555 499999999875321 1222222222111
Q ss_pred -CCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHh
Q 005234 395 -LMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVE 473 (707)
Q Consensus 395 -~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~~l~ 473 (707)
..+-+ -+..+++..|..++. ......+..+. ......||.+|..+|..++... ..+...|...+
T Consensus 158 ~~~~~~--~~r~~a~~~l~~~~~--------~~~~~~l~~~l-~~~~~~vr~~Aa~aL~~~~~~~---~~~~~~l~~~~- 222 (335)
T COG1413 158 LDAALL--DVRAAAAEALGELGD--------PEAIPLLIELL-EDEDADVRRAAASALGQLGSEN---VEAADLLVKAL- 222 (335)
T ss_pred ccchHH--HHHHHHHHHHHHcCC--------hhhhHHHHHHH-hCchHHHHHHHHHHHHHhhcch---hhHHHHHHHHh-
Confidence 00111 456666676666541 11112222222 2344589999999999976432 13444455555
Q ss_pred cCccchhh
Q 005234 474 EEPSLRGQ 481 (707)
Q Consensus 474 ~dp~~r~~ 481 (707)
.+++..++
T Consensus 223 ~~~~~~vr 230 (335)
T COG1413 223 SDESLEVR 230 (335)
T ss_pred cCCCHHHH
Confidence 56666544
No 20
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.26 E-value=1.7 Score=50.55 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhhccccc----CCCCh----HHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccchHHHHH
Q 005234 310 EYFVLEAIPHAVAMVRAA----DNKSP----REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSS 381 (707)
Q Consensus 310 ~YfVqkAIp~ALa~vRd~----~g~~P----~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~~~l~~ 381 (707)
+.+|+.+..-|++.+-.. ...|| .++.+.|.+.|..--+. .|..-+-..|+|||++..+ .
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~LkaLGN~g~~--------~ 477 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK----GDEEEIQLYLKALGNAGHP--------S 477 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc----CCchheeeHHHhhhccCCh--------h
Confidence 346888888888754431 22355 56777777777542211 2444567899999998753 3
Q ss_pred HHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCCh
Q 005234 382 LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI 461 (707)
Q Consensus 382 vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~ 461 (707)
.+..+..++.-|. .--.-+.++|+.+|.+++. ..|-.---.++.-|.+......||++|+-.|++. ...
T Consensus 478 ~i~~l~~~l~~~~---~~~~~iR~~Av~Alr~~a~----~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t----~P~ 546 (574)
T smart00638 478 SIKVLEPYLEGAE---PLSTFIRLAAILALRNLAK----RDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMET----KPS 546 (574)
T ss_pred HHHHHHHhcCCCC---CCCHHHHHHHHHHHHHHHH----hCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhc----CCC
Confidence 4455666665332 2334577888888887752 1222111123344667778899999999999984 222
Q ss_pred hHHHHHHHHHHhcCccchhh
Q 005234 462 DSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 462 ~~al~~~l~~l~~dp~~r~~ 481 (707)
...|+-....+..||+.-++
T Consensus 547 ~~~l~~ia~~l~~E~~~QV~ 566 (574)
T smart00638 547 VALLQRIAELLNKEPNLQVA 566 (574)
T ss_pred HHHHHHHHHHHhhcCcHHHH
Confidence 35677788888888876433
No 21
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.66 E-value=6 Score=44.78 Aligned_cols=236 Identities=17% Similarity=0.168 Sum_probs=142.0
Q ss_pred CCHHHHHHHHhhCCChHHHHHHHHHHHhC----CCChHH-HHHHHHHHhcCCCccHHHHHHHHHHHhcc-cccccccchH
Q 005234 208 QPVQMWINQLEKDGDVVAQAQAIAALEAL----PHLSFN-VVNTLNNFLSDSKAFWRVRIEAAYALANT-ASEETDWAGL 281 (707)
Q Consensus 208 QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~----p~~s~~-~v~aL~rtL~D~ryFygVR~eAA~ALak~-a~~~~~~~Gl 281 (707)
++-..-+.++-.|++..-|..|+.++.+. |..... ....|.+.|.|+ -.+|+..|+.+|..+ .++.....=.
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i~~~~~~~~~~~ 190 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDK--DPSVVSAALSLLSEIKCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHHHCTHHHHTTHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCC--cchhHHHHHHHHHHHccCcchhhhhH
Confidence 34456677888999999999999888653 443223 478888899877 499999999999999 3333211112
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCCh--HHHHHHHHHHHhhcCCCCCCCChhHHH
Q 005234 282 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP--REAVEFVLQLLKYNDNNGNPYSDVFWL 359 (707)
Q Consensus 282 ~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P--~ev~~fLldlLkyNDNS~N~ysDs~Yv 359 (707)
+.+.+.+.+.- + ..+.|+|..+.+.+..+-..+...+ ..+.+.+..+|..+ +.-+
T Consensus 191 ~~~~~~L~~~l-------~-------~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~---------~~~V 247 (526)
T PF01602_consen 191 PKLIRILCQLL-------S-------DPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSS---------SPSV 247 (526)
T ss_dssp HHHHHHHHHHH-------T-------CCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHH---------HHHH
T ss_pred HHHHHHhhhcc-------c-------ccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhcc---------ccHH
Confidence 23333332210 1 1345699999999887754332233 45677777777732 2222
Q ss_pred -HHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCC
Q 005234 360 -AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFN 438 (707)
Q Consensus 360 -A~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g 438 (707)
-+++.++..+.. .......++.-+.+++. |...-+...+|++|..+.......+....+ ...+-...
T Consensus 248 ~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~---~~~~l~~~ 315 (526)
T PF01602_consen 248 VYEAIRLIIKLSP---SPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVFNQSL---ILFFLLYD 315 (526)
T ss_dssp HHHHHHHHHHHSS---SHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHGTHHH---HHHHHHCS
T ss_pred HHHHHHHHHHhhc---chHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhhhhhh---hhheecCC
Confidence 455555544321 22256778888888885 455557788888888875221000111111 11122334
Q ss_pred CcHHHHHHHHHHhhhhhhccCChhHHHHHHHHHH-hc-Cccchhh
Q 005234 439 TIWQVRVEASRALLDLEFHCNGIDSALSLFIKSV-EE-EPSLRGQ 481 (707)
Q Consensus 439 ~~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~~l-~~-dp~~r~~ 481 (707)
....+|..|++.|..+... ......+.-++.++ +. |++.+..
T Consensus 316 ~d~~Ir~~~l~lL~~l~~~-~n~~~Il~eL~~~l~~~~d~~~~~~ 359 (526)
T PF01602_consen 316 DDPSIRKKALDLLYKLANE-SNVKEILDELLKYLSELSDPDFRRE 359 (526)
T ss_dssp SSHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHC--HHHHHH
T ss_pred CChhHHHHHHHHHhhcccc-cchhhHHHHHHHHHHhccchhhhhh
Confidence 5688999999999998743 33345677778888 44 5555433
No 22
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=93.29 E-value=15 Score=41.26 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=60.4
Q ss_pred ccEEEEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEcCce-E----EEEecccCCCcceEEEEe-ccc
Q 005234 77 KNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGM-Y----DHPILPMAGDAWQLLEIQ-CHS 150 (707)
Q Consensus 77 r~~VEL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~DGt-y----eH~V~~i~~d~~~k~eIp-~ns 150 (707)
+++..|+++|.++..+ ......-|..|+.|.+-..+|. . +.++ ++++..++|.|. +..
T Consensus 2 ~~~~~Ltl~Q~~p~tp--------------gq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl--~L~~~~qtf~F~~v~~ 65 (367)
T PF11940_consen 2 AGTYTLTLSQSTPPTP--------------GQPEKQPLHIPVRVGLLDPDGKELPLRLERVL--ELTEAEQTFTFEGVSE 65 (367)
T ss_dssp TTEEEEEEEEEE--BT--------------TBSS-----EEEEEEEE-TTS-B-SEEESEEE--EE-SSEEEEEES---S
T ss_pred CcEEEEEEEecCCCCC--------------CCCCCCCeeeeeEEEEECCCCCCccCCCCceE--EeccCeEEEEEeCCCC
Confidence 4567889999875421 1112234678999998888886 3 3544 467888888887 333
Q ss_pred hhhHHhhcCCCCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHHHHHHHHhhCCChHHHHHHH
Q 005234 151 KLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAI 230 (707)
Q Consensus 151 K~k~rR~~K~Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~Mw~sQLq~DrDVvAQlEAI 230 (707)
|| -..+=-+|-=-.+++.++++..+...+++|.|-..|.||.
T Consensus 66 ~P--------------------------------------vpSllRgFSAPV~l~~~~s~~eL~~L~~~D~D~FnRWdA~ 107 (367)
T PF11940_consen 66 KP--------------------------------------VPSLLRGFSAPVKLEYDYSDEELAFLAAHDSDPFNRWDAA 107 (367)
T ss_dssp ----------------------------------------EEEESTTG-SSSEEE----HHHHHHHHHH-SSHHHHHHHH
T ss_pred Cc--------------------------------------eeehhcCcccceEecCCCCHHHHHHHHHcCCChhHHHHHH
Confidence 32 1222224555556777899999999999999999999999
Q ss_pred HHHHh
Q 005234 231 AALEA 235 (707)
Q Consensus 231 ~aL~~ 235 (707)
+.|..
T Consensus 108 Q~L~~ 112 (367)
T PF11940_consen 108 QTLAT 112 (367)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 23
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=2.5 Score=51.04 Aligned_cols=232 Identities=18% Similarity=0.207 Sum_probs=142.5
Q ss_pred cCCCceEEEEeccCCHH-HHHHHHhhCCChHHHHHHHHHHHhC----CCC-------hHHHHHHHHHHhcCCCccHHHHH
Q 005234 195 DPEMEYLAEIHFNQPVQ-MWINQLEKDGDVVAQAQAIAALEAL----PHL-------SFNVVNTLNNFLSDSKAFWRVRI 262 (707)
Q Consensus 195 Dpd~ewL~~V~~~QPd~-Mw~sQLq~DrDVvAQlEAI~aL~~~----p~~-------s~~~v~aL~rtL~D~ryFygVR~ 262 (707)
|-=++||+++-+.+++. ..+-|+-...|+.-|.-||+-|... |.. +...++.|...|.|. ---||-
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds--rE~IRN 184 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS--REPIRN 184 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh--hhhhch
Confidence 33478999988887754 3444555557999999999777642 210 112467788888887 467999
Q ss_pred HHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhccccc---C-CCChHHHHHH
Q 005234 263 EAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAA---D-NKSPREAVEF 338 (707)
Q Consensus 263 eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~---~-g~~P~ev~~f 338 (707)
+|..-|.....+.+.-.-+-+--.+|-. -++-|+.+ | |..-.++.-|
T Consensus 185 e~iLlL~eL~k~n~~IQKlVAFENaFer-----------------------------LfsIIeeEGg~dGgIVveDCL~l 235 (970)
T KOG0946|consen 185 EAILLLSELVKDNSSIQKLVAFENAFER-----------------------------LFSIIEEEGGLDGGIVVEDCLIL 235 (970)
T ss_pred hHHHHHHHHHccCchHHHHHHHHHHHHH-----------------------------HHHHHHhcCCCCCcchHHHHHHH
Confidence 9999888877654422222232334433 23333332 2 4678899999
Q ss_pred HHHHHhhcCCCCCCCChhHHHHHHHHHhhccccccc-----chHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHH
Q 005234 339 VLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQ-----SILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQ 413 (707)
Q Consensus 339 LldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~-----~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~ 413 (707)
|.+|||+|--..|-|-.+-|+..+.+-|..-.++.. +..-...++..+.-... -+.|+-..-+|-+|-+++-+
T Consensus 236 l~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~--lVsP~Nt~~~~~q~qk~l~s 313 (970)
T KOG0946|consen 236 LNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRS--LVSPGNTSSITHQNQKALVS 313 (970)
T ss_pred HHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHH--hcCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999888876555432 11112333333332222 23566666666667555544
Q ss_pred HHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCChhHHHHHHHHHH
Q 005234 414 IALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSV 472 (707)
Q Consensus 414 L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~~l 472 (707)
-.+ ++.++.+ +...|.|.+|+-.++-.+.... +|...+=+.|..+.
T Consensus 314 s~l-------l~~Lc~i---l~~~~vp~dIltesiitvAevV---Rgn~~nQ~~F~~v~ 359 (970)
T KOG0946|consen 314 SHL-------LDVLCTI---LMHPGVPADILTESIITVAEVV---RGNARNQDEFADVT 359 (970)
T ss_pred cch-------HHHHHHH---HcCCCCcHhHHHHHHHHHHHHH---HhchHHHHHHhhcc
Confidence 221 2444443 3556788888888887776643 33333333444444
No 24
>PTZ00429 beta-adaptin; Provisional
Probab=90.32 E-value=46 Score=40.82 Aligned_cols=64 Identities=22% Similarity=0.208 Sum_probs=47.1
Q ss_pred CCHH--HHHHHHhh---CCChHHHHHHHHHHHhCCCCh--HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccc
Q 005234 208 QPVQ--MWINQLEK---DGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 273 (707)
Q Consensus 208 QPd~--Mw~sQLq~---DrDVvAQlEAI~aL~~~p~~s--~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~ 273 (707)
+|+- +-++.|++ |++-.-|--|++.|.....+. ......+.++|.|+ ---||..||.|+.++-.
T Consensus 99 ~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~--~pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 99 QPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADP--DPYVRKTAAMGLGKLFH 169 (746)
T ss_pred ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Confidence 4543 55666654 468888999999999876542 12456678889887 57799999999999754
No 25
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.24 E-value=21 Score=38.61 Aligned_cols=71 Identities=25% Similarity=0.184 Sum_probs=52.5
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 288 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~F 288 (707)
.|+++--.|.....-.|+.-.|+..... .++.+|...|.|+.-=--||-+||+||+.+...+. +..|-|+.
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~~--~Av~~l~~vl~desq~pmvRhEAaealga~~~~~~----~~~l~k~~ 109 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQDE--DAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPES----LEILTKYI 109 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhccc--hhhHHHHHHhcccccchHHHHHHHHHHHhhcchhh----HHHHHHHh
Confidence 4555555555555555777777776654 47899999999998899999999999999985543 56666665
No 26
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.23 E-value=24 Score=44.42 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=51.9
Q ss_pred CCHHHHHHHHhhCCChHHHHHHHHHHHhCCCC--------hHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccc
Q 005234 208 QPVQMWINQLEKDGDVVAQAQAIAALEALPHL--------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWA 279 (707)
Q Consensus 208 QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~--------s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~ 279 (707)
-|-+.|+.++-+..|..-|..|+.+|+-.... -..+..+....|.|+ --+||.+|+.|++.++++-.
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp--hprVr~AA~naigQ~stdl~--- 421 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP--HPRVRYAALNAIGQMSTDLQ--- 421 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHhhhhhhc---
Confidence 46778888888888888888888777643211 113456666777777 78888888888888887642
Q ss_pred hHHHHHHHHHh
Q 005234 280 GLLHLVKFYKS 290 (707)
Q Consensus 280 Gl~~Lik~Fk~ 290 (707)
+.+-|.+.+
T Consensus 422 --p~iqk~~~e 430 (1075)
T KOG2171|consen 422 --PEIQKKHHE 430 (1075)
T ss_pred --HHHHHHHHH
Confidence 444555443
No 27
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.97 E-value=0.7 Score=53.97 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhcccc--------------cCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccchH
Q 005234 312 FVLEAIPHAVAMVRA--------------ADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSIL 377 (707)
Q Consensus 312 fVqkAIp~ALa~vRd--------------~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~~ 377 (707)
.|+.+..-++|.+-. ....++.++.+.|.+.|+-... ..|..-+-..++|||++..+
T Consensus 450 ~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~LkaLgN~g~~----- 520 (618)
T PF01347_consen 450 YLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVS----RGDEEEKIVYLKALGNLGHP----- 520 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHT-G-----
T ss_pred hHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhh----ccCHHHHHHHHHHhhccCCc-----
Confidence 467777777764422 1344566788888888872211 24455568899999998643
Q ss_pred HHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhc
Q 005234 378 FLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFH 457 (707)
Q Consensus 378 ~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~ 457 (707)
.++..+..++.-+. ..-..+.++||.+|.+++ ...|-.-.--++.-|.+.+....||+||+..|++-
T Consensus 521 ---~~i~~l~~~i~~~~---~~~~~~R~~Ai~Alr~~~----~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--- 587 (618)
T PF01347_consen 521 ---ESIPVLLPYIEGKE---EVPHFIRVAAIQALRRLA----KHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRC--- 587 (618)
T ss_dssp ---GGHHHHHTTSTTSS----S-HHHHHHHHHTTTTGG----GT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---
T ss_pred ---hhhHHHHhHhhhcc---ccchHHHHHHHHHHHHHh----hcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc---
Confidence 24455666665443 445678899999888764 23332111112334567778899999999999983
Q ss_pred cCChhHHHHHHHHHHhcCccchh
Q 005234 458 CNGIDSALSLFIKSVEEEPSLRG 480 (707)
Q Consensus 458 ~~g~~~al~~~l~~l~~dp~~r~ 480 (707)
......|+-....+..||+.-+
T Consensus 588 -~P~~~~l~~i~~~l~~E~~~QV 609 (618)
T PF01347_consen 588 -NPSPSVLQRIAQSLWNEPSNQV 609 (618)
T ss_dssp ----HHHHHHHHHHHTT-S-HHH
T ss_pred -CCCHHHHHHHHHHHhhCchHHH
Confidence 2223567778888888887643
No 28
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=85.14 E-value=0.79 Score=32.31 Aligned_cols=28 Identities=39% Similarity=0.420 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 005234 258 WRVRIEAAYALANTASEETDWAGLLHLVKFYK 289 (707)
Q Consensus 258 ygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk 289 (707)
|.||.+||.+|+.+.++++ ...|+++.+
T Consensus 1 ~~vR~~aa~aLg~~~~~~a----~~~L~~~l~ 28 (30)
T smart00567 1 PLVRHEAAFALGQLGDEEA----VPALIKALE 28 (30)
T ss_pred CHHHHHHHHHHHHcCCHhH----HHHHHHHhc
Confidence 6789999999999887664 667776653
No 29
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=82.18 E-value=1.7 Score=30.35 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcccccccccchHHHHHHHHH
Q 005234 260 VRIEAAYALANTASEETDWAGLLHLVKFYK 289 (707)
Q Consensus 260 VR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk 289 (707)
||.+||.+|+.+..+++ ++.|+++.+
T Consensus 1 VR~~Aa~aLg~igd~~a----i~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRA----IPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHH----HHHHHHHhc
Confidence 79999999999998764 788887764
No 30
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=79.72 E-value=1.3e+02 Score=35.14 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHH
Q 005234 258 WRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVE 337 (707)
Q Consensus 258 ygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~ 337 (707)
+..|.-=-.||+.+++..+ +..+.+.+++. + ...-.....+..+++.++..+ +++.+
T Consensus 340 ~~~r~~~~Dal~~~GT~~a----~~~i~~~i~~~------------~---~~~~ea~~~~~~~~~~~~~Pt----~~~l~ 396 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPA----LKFIKQWIKNK------------K---ITPLEAAQLLAVLPHTARYPT----EEILK 396 (574)
T ss_pred HHHHHHHHHHHHhcCCHHH----HHHHHHHHHcC------------C---CCHHHHHHHHHHHHHhhhcCC----HHHHH
Confidence 4445555566777776654 66666666542 1 122235666777778877654 67888
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccc--cccc--------hHHHHHHHHHHHHHHhcCcCCCCcccHhHHHH
Q 005234 338 FVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF--GQQS--------ILFLSSLLKRIDRLLQFDRLMPSYNGILTISC 407 (707)
Q Consensus 338 fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~--~~~~--------~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvac 407 (707)
-++++++.- ++ -+..+-..+++-|+|.+.- +... ..+...+.+++.....- - ..-..+.+
T Consensus 397 ~l~~l~~~~-~~---~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~---~~~~~~~~ 466 (574)
T smart00638 397 ALFELAESP-EV---QKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK---G---DEEEIQLY 466 (574)
T ss_pred HHHHHhcCc-cc---cccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc---C---CchheeeH
Confidence 888888752 22 2223333777888886531 1111 12233344444444320 1 12234668
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhhhccc--CCCCcHHHHHHHHHHhhhhhhccCChhHHHHHHHHHH
Q 005234 408 IRTLTQIALKLSGFISLDQVVKLIKPFR--DFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSV 472 (707)
Q Consensus 408 L~~L~~L~~~~~g~i~~d~~~~ll~~yt--~~g~~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~~l 472 (707)
|++|.+++ +.. ....+.+|. ....+..+|.+|+.+|-.++.... +.+...++.+.
T Consensus 467 LkaLGN~g-----~~~---~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--~~v~~~l~~i~ 523 (574)
T smart00638 467 LKALGNAG-----HPS---SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--RKVQEVLLPIY 523 (574)
T ss_pred HHhhhccC-----Chh---HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHH
Confidence 88888864 222 122233333 345678999999999998765433 34555566665
No 31
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=78.93 E-value=2.7 Score=30.05 Aligned_cols=26 Identities=35% Similarity=0.253 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHhccc
Q 005234 245 NTLNNFLSDSKAFWRVRIEAAYALANTA 272 (707)
Q Consensus 245 ~aL~rtL~D~ryFygVR~eAA~ALak~a 272 (707)
..|...+.|+ -|.||..|+.+|+.+.
T Consensus 3 p~l~~~l~D~--~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQLLNDP--SPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHT-S--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 4567888898 8999999999999875
No 32
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.43 E-value=12 Score=44.65 Aligned_cols=163 Identities=21% Similarity=0.247 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhccccccccc--chHHHHHHHHHhccCCC---CC--CCCCCCCCCChhHHHHHH
Q 005234 243 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--AGLLHLVKFYKSRRFDE---NI--GLPRPNDFRDFSEYFVLE 315 (707)
Q Consensus 243 ~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~--~Gl~~Lik~Fk~~~~~~---~s--~iPkpNdFsdf~~YfVqk 315 (707)
+|-++...|+|+ ||.||..|..+|.+.+...+.+ ..+..|+.+|.+.+-+= .+ =.+-.+. --+++
T Consensus 374 ACGA~VhGlEDE--f~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~e 445 (823)
T KOG2259|consen 374 ACGALVHGLEDE--FYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIRE 445 (823)
T ss_pred ccceeeeechHH--HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecH
Confidence 688999999999 9999999999999999855544 45788888886521000 00 0000000 00122
Q ss_pred H-HHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHH----HHHHHHhhccc------------ccccchHH
Q 005234 316 A-IPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWL----AALVQSVGELE------------FGQQSILF 378 (707)
Q Consensus 316 A-Ip~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~Yv----A~lI~ALg~~~------------~~~~~~~~ 378 (707)
. ++.-++.++| +..+|++-+.++|+.- .|+|---+ +.+.+.|+.-- +++....+
T Consensus 446 eql~~il~~L~D----~s~dvRe~l~elL~~~-----~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 446 EQLRQILESLED----RSVDVREALRELLKNA-----RVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred HHHHHHHHHHHh----cCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccChhh
Confidence 1 2333444555 4478899999999753 46775543 56666666531 12222222
Q ss_pred -HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCC
Q 005234 379 -LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI 422 (707)
Q Consensus 379 -l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i 422 (707)
++.+-.-++........-||..+--.++-|.-+...+...-+.|
T Consensus 517 v~s~m~rfl~kh~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii 561 (823)
T KOG2259|consen 517 VLSNMGRFLEKHTSFATIEPSLEDGFYIAKLILVRNAARADPGII 561 (823)
T ss_pred HHHHHHHHHHhcccccccCccccChhhhhhhhhhhhhhhhCCCee
Confidence 22233333444555666778777777777777777664433433
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=73.37 E-value=63 Score=39.69 Aligned_cols=179 Identities=15% Similarity=0.065 Sum_probs=100.6
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHh
Q 005234 242 NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAV 321 (707)
Q Consensus 242 ~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~AL 321 (707)
-+++.|.+-+.|+ =--||..|.+.|+++..++. ...++...++-.-+ .+.+|||+-.-|+
T Consensus 105 LaINtl~KDl~d~--Np~IRaLALRtLs~Ir~~~i----~e~l~~~lkk~L~D--------------~~pYVRKtAalai 164 (746)
T PTZ00429 105 LAVNTFLQDTTNS--SPVVRALAVRTMMCIRVSSV----LEYTLEPLRRAVAD--------------PDPYVRKTAAMGL 164 (746)
T ss_pred HHHHHHHHHcCCC--CHHHHHHHHHHHHcCCcHHH----HHHHHHHHHHHhcC--------------CCHHHHHHHHHHH
Confidence 4678888888887 46799999999999998764 45666666552111 2345999888888
Q ss_pred hcccccCCC-Ch-HHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCc
Q 005234 322 AMVRAADNK-SP-REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSY 399 (707)
Q Consensus 322 a~vRd~~g~-~P-~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY 399 (707)
.++=..+.. ++ ....+-|.++|.. +|.--+++++.+|-.+.-...+ .+.-...-+.+++ ..+|..
T Consensus 165 ~Kly~~~pelv~~~~~~~~L~~LL~D--------~dp~Vv~nAl~aL~eI~~~~~~--~l~l~~~~~~~Ll---~~L~e~ 231 (746)
T PTZ00429 165 GKLFHDDMQLFYQQDFKKDLVELLND--------NNPVVASNAAAIVCEVNDYGSE--KIESSNEWVNRLV---YHLPEC 231 (746)
T ss_pred HHHHhhCcccccccchHHHHHHHhcC--------CCccHHHHHHHHHHHHHHhCch--hhHHHHHHHHHHH---HHhhcC
Confidence 876433221 11 2344566676643 4566778888888876421111 1121222233333 223444
Q ss_pred ccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhh
Q 005234 400 NGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 456 (707)
Q Consensus 400 ~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~ 456 (707)
...-.+.+|+.|.+.. -...-....+++.+.+..+..+ ..|-++|+++++.+..
T Consensus 232 ~EW~Qi~IL~lL~~y~--P~~~~e~~~il~~l~~~Lq~~N-~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 232 NEWGQLYILELLAAQR--PSDKESAETLLTRVLPRMSHQN-PAVVMGAIKVVANLAS 285 (746)
T ss_pred ChHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcC
Confidence 4444456666665421 0000011234444444444433 5788888888887653
No 34
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.38 E-value=1.3e+02 Score=33.48 Aligned_cols=283 Identities=17% Similarity=0.185 Sum_probs=130.3
Q ss_pred HhhCCChHHHHHHHHHHHhCCCC--------hHHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc-ccchHHHHHHH
Q 005234 217 LEKDGDVVAQAQAIAALEALPHL--------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-DWAGLLHLVKF 287 (707)
Q Consensus 217 Lq~DrDVvAQlEAI~aL~~~p~~--------s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~-~~~Gl~~Lik~ 287 (707)
|-++..---|..|++.+-..... +......|...+++..- --.||.||.+.+-+.. .-.=+..|++.
T Consensus 11 ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ll~~~~k~ 86 (353)
T KOG2973|consen 11 LLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKKLLQDLLKV 86 (353)
T ss_pred HhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33555555677777666543221 34456677777777653 4467888888775431 00001112222
Q ss_pred HHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccC-----CCC-hHHHHHHHHHHH-hhcCCCCCCCChhHHHH
Q 005234 288 YKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD-----NKS-PREAVEFVLQLL-KYNDNNGNPYSDVFWLA 360 (707)
Q Consensus 288 Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~-----g~~-P~ev~~fLldlL-kyNDNS~N~ysDs~YvA 360 (707)
.-..-.+|.+.+-+ +-+.+..++++.++.- ..+ +.+ .-|.++. ++-|-|.|.|..=.|+|
T Consensus 87 l~~~~~~p~~~lad-----------~~cmlL~NLs~~~~~~~~ll~~~~~~~~--~~lm~l~~~~~d~~~n~~a~f~ylA 153 (353)
T KOG2973|consen 87 LMDMLTDPQSPLAD-----------LICMLLSNLSRDDDEVAALLTNLTEKKD--SGLMRLARAFCDKSYNAYAEFHYLA 153 (353)
T ss_pred HHHHhcCcccchHH-----------HHHHHHHHhccCchHHHHHHHhcccccc--cchHHHHHHHhCcccccccchhHHH
Confidence 22222233222222 3444445555443210 000 000 1222232 44578889999999999
Q ss_pred HHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHH-H------HHHHhcCCCChHHHHHhhhc
Q 005234 361 ALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLT-Q------IALKLSGFISLDQVVKLIKP 433 (707)
Q Consensus 361 ~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~-~------L~~~~~g~i~~d~~~~ll~~ 433 (707)
.+...|+....+.. .+...=.--+.+.+.++ ||.+.|.-+..-+.. + ++..+-+ .+.+-+..++.+
T Consensus 154 ~vf~nls~~~~gR~--l~~~~k~~p~~kll~ft----~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlP 226 (353)
T KOG2973|consen 154 PVFANLSQFEAGRK--LLLEPKRFPDQKLLPFT----SEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLP 226 (353)
T ss_pred HHHHHHhhhhhhhh--HhcchhhhhHhhhhccc----ccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhh
Confidence 99999987643311 01110011123333333 466666543322211 1 1111122 222222222233
Q ss_pred ccCCCCcHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHhcCccchhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHH
Q 005234 434 FRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALL 513 (707)
Q Consensus 434 yt~~g~~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l 513 (707)
-..+..+..-= . .++-..|+|+=.-=++||++-.+..+.-..+-+|++..|++.=.+-.-..+++.+
T Consensus 227 lagpee~sEEd------------m-~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilREl 293 (353)
T KOG2973|consen 227 LAGPEELSEED------------M-AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILREL 293 (353)
T ss_pred cCCccccCHHH------------H-hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHH
Confidence 22222111000 0 0000123333222345677766655666667888887666533344566777777
Q ss_pred HHhccccccccchhhhhHHHHHHHhhcC
Q 005234 514 NLLESRIAFNNVFLRHHLFGILQILAGR 541 (707)
Q Consensus 514 ~~~~~~~~~~d~~lR~~~~~~~~~L~g~ 541 (707)
+.++. -.|.+.-|. .+.|.|-+.
T Consensus 294 hk~e~---ded~~~ace--~vvq~Lv~~ 316 (353)
T KOG2973|consen 294 HKWEE---DEDIREACE--QVVQMLVRL 316 (353)
T ss_pred hcCCC---cHHHHHHHH--HHHHHHHhc
Confidence 77663 235555555 334555553
No 35
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=71.61 E-value=12 Score=29.57 Aligned_cols=44 Identities=32% Similarity=0.301 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCC--------hHHHHHHHHHHhcCCCccHHHHHHHHHHHhcc
Q 005234 226 QAQAIAALEALPHL--------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANT 271 (707)
Q Consensus 226 QlEAI~aL~~~p~~--------s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~ 271 (707)
|..|+.+|+..... ...++..|...|.|+.- .||..|+.+|+.+
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 56777788743211 12457788899998864 9999999999864
No 36
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=71.43 E-value=2.8e+02 Score=35.98 Aligned_cols=299 Identities=15% Similarity=0.130 Sum_probs=165.6
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhCCCC---h---HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHH
Q 005234 211 QMWINQLEKDGDVVAQAQAIAALEALPHL---S---FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHL 284 (707)
Q Consensus 211 ~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~---s---~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~L 284 (707)
.+..+=+++=+-....++|++-|.....- . ..+.--+...++|+ .-.||+.|...|+++-..-....-..
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds--~a~Vra~Al~Tlt~~L~~Vr~~~~~d-- 500 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDS--EADVRATALETLTELLALVRDIPPSD-- 500 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCc--hHHHHHHHHHHHHHHHhhccCCCccc--
Confidence 45666678888888899999888765321 1 01223345667888 89999999999998753211000000
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCh-hHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcC----CCCCCCChhHHH
Q 005234 285 VKFYKSRRFDENIGLPRPNDFRDF-SEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYND----NNGNPYSDVFWL 359 (707)
Q Consensus 285 ik~Fk~~~~~~~s~iPkpNdFsdf-~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyND----NS~N~ysDs~Yv 359 (707)
...|.++-| |.=|.|.+= ..-.|+=|+...|+.+= .-|-+||.---.-++ |+.|.-
T Consensus 501 aniF~eYlf------P~L~~l~~d~~~~~vRiayAsnla~LA-------~tA~rFle~~q~~~~~g~~n~~nse------ 561 (1431)
T KOG1240|consen 501 ANIFPEYLF------PHLNHLLNDSSAQIVRIAYASNLAQLA-------KTAYRFLELTQELRQAGMLNDPNSE------ 561 (1431)
T ss_pred chhhHhhhh------hhhHhhhccCccceehhhHHhhHHHHH-------HHHHHHHHHHHHHHhcccccCcccc------
Confidence 123443211 111222111 22236777777777663 356666654333222 222221
Q ss_pred HHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCC
Q 005234 360 AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNT 439 (707)
Q Consensus 360 A~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~ 439 (707)
...+..++.. ...+-..+++..--|-.| -..+|.-+-++.|..|+.-+...-+.|-++..+-.|....
T Consensus 562 -t~~~~~~~~~-----~~~L~~~V~~~v~sLlsd-----~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDk- 629 (1431)
T KOG1240|consen 562 -TAPEQNYNTE-----LQALHHTVEQMVSSLLSD-----SPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDK- 629 (1431)
T ss_pred -cccccccchH-----HHHHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCc-
Confidence 1111111111 111222334444444344 2378999999999999865555555666777777777765
Q ss_pred cHHHHHHHHHHhhhhhhccC--ChhHHHHHHHHHHhcCccchhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHHHHhc
Q 005234 440 IWQVRVEASRALLDLEFHCN--GIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLE 517 (707)
Q Consensus 440 ~~~vRiaA~~aL~~l~~~~~--g~~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~ 517 (707)
-+.+|-|-|+.+.-+...-+ ..++.+.-+|..--.|+..-+-++.+ .++..+... +-|+.+.+++.+..-.
T Consensus 630 Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL-~~ls~Lik~------~ll~K~~v~~i~~~v~ 702 (1431)
T KOG1240|consen 630 DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSAL-GSLSILIKL------GLLRKPAVKDILQDVL 702 (1431)
T ss_pred cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHH-HHHHHHHHh------cccchHHHHHHHHhhh
Confidence 79999999999986643322 22444443444433565543222222 122222211 2278888888777655
Q ss_pred cccccccchhhhhHHHHHHHhh------cCCCcccCCCCC
Q 005234 518 SRIAFNNVFLRHHLFGILQILA------GRAPTLYGVPRD 551 (707)
Q Consensus 518 ~~~~~~d~~lR~~~~~~~~~L~------g~~~~l~g~~~~ 551 (707)
-=.++-|.-+|+.+++++..-+ ..|..|+-+=|+
T Consensus 703 PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irp 742 (1431)
T KOG1240|consen 703 PLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRP 742 (1431)
T ss_pred hheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHH
Confidence 5455568889999999887654 456666655444
No 37
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=68.36 E-value=18 Score=39.07 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=78.0
Q ss_pred EEEEcCCCc-eEEEEeccCCHHHHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Q 005234 191 WIRADPEME-YLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALA 269 (707)
Q Consensus 191 WIRvDpd~e-wL~~V~~~QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALa 269 (707)
++.+||--- -+..| ..+=..=|..-+-..-|+.|+=+|...++. .++++|.+.+.++ --=.|.++|..|+
T Consensus 142 ~~SvdPa~p~~~ssv-----~~lr~~lld~t~~l~~Ry~amF~LRn~g~E--eaI~al~~~l~~~--SalfrhEvAfVfG 212 (289)
T KOG0567|consen 142 YISVDPAPPANLSSV-----HELRAELLDETKPLFERYRAMFYLRNIGTE--EAINALIDGLADD--SALFRHEVAFVFG 212 (289)
T ss_pred cccCCCCCccccccH-----HHHHHHHHhcchhHHHHHhhhhHhhccCcH--HHHHHHHHhcccc--hHHHHHHHHHHHh
Confidence 445888765 11111 222233334445667788999999988764 5889999999998 6777899999999
Q ss_pred cccccccccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhccccc
Q 005234 270 NTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAA 327 (707)
Q Consensus 270 k~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~ 327 (707)
.+.++.+ .+.|++...+. +.+|. ||+.-..||+.+=++
T Consensus 213 Ql~s~~a----i~~L~k~L~d~-----~E~pM-----------VRhEaAeALGaIa~e 250 (289)
T KOG0567|consen 213 QLQSPAA----IPSLIKVLLDE-----TEHPM-----------VRHEAAEALGAIADE 250 (289)
T ss_pred hccchhh----hHHHHHHHHhh-----hcchH-----------HHHHHHHHHHhhcCH
Confidence 9998865 88999988762 33444 999999999988663
No 38
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.84 E-value=3.5e+02 Score=34.68 Aligned_cols=174 Identities=23% Similarity=0.316 Sum_probs=107.4
Q ss_pred cCCHHHHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchH-----
Q 005234 207 NQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGL----- 281 (707)
Q Consensus 207 ~QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl----- 281 (707)
.+|-+..+.|| ..+|=..+.+|=++|+.....+ .+..+|...+.... =-.||..||--+-|..+. -|.++
T Consensus 3 ~~~l~qLl~~l-~spDn~vr~~Ae~~l~~~~~~~-~~l~~L~~i~~~~~-~p~~Rq~aaVl~Rkl~~~--~w~~l~~e~~ 77 (1075)
T KOG2171|consen 3 SAPLEQLLQQL-LSPDNEVRRQAEEALETLAKTE-PLLPALAHILATSA-DPQVRQLAAVLLRKLLTK--HWSRLSAEVQ 77 (1075)
T ss_pred hhHHHHHHHHh-cCCCchHHHHHHHHHHHhhccc-chHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH--HhhcCCHHHH
Confidence 45677888888 5576666999999998654332 24555655554332 557999999877776654 34332
Q ss_pred ----HHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCC-ChHHHHHHHHHHHhhcCCCCCCCChh
Q 005234 282 ----LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK-SPREAVEFVLQLLKYNDNNGNPYSDV 356 (707)
Q Consensus 282 ----~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~-~P~ev~~fLldlLkyNDNS~N~ysDs 356 (707)
..|+.++.+. |.++ |++++-..+|.+=..... .+++..+||.+-++.-|-+.+ .-.
T Consensus 78 ~siks~lL~~~~~E--------~~~~---------vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~r--E~a 138 (1075)
T KOG2171|consen 78 QSIKSSLLEIIQSE--------TEPS---------VRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLR--ESA 138 (1075)
T ss_pred HHHHHHHHHHHHhc--------cchH---------HHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchh--HHH
Confidence 3355555432 2222 899999888887644433 488999999888865432222 123
Q ss_pred HHH-HHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHH
Q 005234 357 FWL-AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 415 (707)
Q Consensus 357 ~Yv-A~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~ 415 (707)
+++ +++.+..|+.. .+++..++.-+...+. -||-. |.+++++++....
T Consensus 139 l~il~s~~~~~~~~~-----~~~~~~l~~lf~q~~~----d~s~~--vr~~a~rA~~a~~ 187 (1075)
T KOG2171|consen 139 LLILSSLPETFGNTL-----QPHLDDLLRLFSQTMT----DPSSP--VRVAAVRALGAFA 187 (1075)
T ss_pred HHHHHhhhhhhcccc-----chhHHHHHHHHHHhcc----CCcch--HHHHHHHHHHHHH
Confidence 443 55555555432 2233333334444443 67777 9999999988875
No 39
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=67.79 E-value=4.7e+02 Score=36.13 Aligned_cols=278 Identities=16% Similarity=0.109 Sum_probs=148.5
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccc----
Q 005234 211 QMWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD---- 277 (707)
Q Consensus 211 ~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~---- 277 (707)
.-++.-|.+ .+...|..|+..++.....+. .++..|.+.|..+ -..+|.+||-+|+.++....+
T Consensus 449 p~LV~LL~s-~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 449 QLLISLLGL-SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444544 578889998888764321110 1356788888766 569999999999998753211
Q ss_pred ---cchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCC
Q 005234 278 ---WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYS 354 (707)
Q Consensus 278 ---~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ys 354 (707)
-.+++.|++..++ + +..+|+....||+.+=. +| . .++..-|.++|.. +
T Consensus 526 V~~aGAIppLV~LL~s-------g-----------d~~~q~~Aa~AL~nLi~-~~-d-~~~I~~Lv~LLls--------d 576 (2102)
T PLN03200 526 VESAGAVPALLWLLKN-------G-----------GPKGQEIAAKTLTKLVR-TA-D-AATISQLTALLLG--------D 576 (2102)
T ss_pred HHHCCCHHHHHHHHhC-------C-----------CHHHHHHHHHHHHHHHh-cc-c-hhHHHHHHHHhcC--------C
Confidence 1236777877764 1 12477888888887721 11 1 2344557788764 3
Q ss_pred hhHHHHHHHHHhhcccccccchHH------HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHH---------Hhc
Q 005234 355 DVFWLAALVQSVGELEFGQQSILF------LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---------KLS 419 (707)
Q Consensus 355 Ds~YvA~lI~ALg~~~~~~~~~~~------l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~---------~~~ 419 (707)
|.-....++++||++....+.... ....++-|..+|+ |-+..+...|..+|..+.- -..
T Consensus 577 d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~------sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~a 650 (2102)
T PLN03200 577 LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS------SSKEETQEKAASVLADIFSSRQDLCESLATD 650 (2102)
T ss_pred ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 355566678888876321111111 1235677777776 3344444444455545431 011
Q ss_pred CCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCCh-------hHHHHHHHHHHhcCccchhhhHHHHHhhhHH
Q 005234 420 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI-------DSALSLFIKSVEEEPSLRGQVKLGIHAMRIC 492 (707)
Q Consensus 420 g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~-------~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~ 492 (707)
|. +.++..++.. .-..+|.+|..+|.-+....... ..++..+++.+ .+++.... .....++..+
T Consensus 651 ga--IpPLV~LLss-----~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL-~~~d~~v~-e~Al~ALanL 721 (2102)
T PLN03200 651 EI--INPCIKLLTN-----NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA-KSSSIEVA-EQAVCALANL 721 (2102)
T ss_pred CC--HHHHHHHHhc-----CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH-hCCChHHH-HHHHHHHHHH
Confidence 22 2234444432 34578999999988765211100 12466677777 44444322 1222232222
Q ss_pred HhhCCCC---CCCCCCcHHHHHHHHHhccccccccchhhhhHHHHHHHhhcCCC
Q 005234 493 QIKGGSD---SNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAP 543 (707)
Q Consensus 493 ~~~~~~~---~~~~l~~~~l~~~l~~~~~~~~~~d~~lR~~~~~~~~~L~g~~~ 543 (707)
...+.+. ..... -+.|++.|. + .+.+.|..+...|..|....+
T Consensus 722 l~~~e~~~ei~~~~~-I~~Lv~lLr---~----G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 722 LSDPEVAAEALAEDI-ILPLTRVLR---E----GTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HcCchHHHHHHhcCc-HHHHHHHHH---h----CChHHHHHHHHHHHHHHhCCC
Confidence 2221110 00011 244444443 3 357778888888777766555
No 40
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.68 E-value=3.2e+02 Score=33.41 Aligned_cols=315 Identities=18% Similarity=0.176 Sum_probs=172.3
Q ss_pred HhhCCChHHHHHHHHHHHhCC---CChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccc-----cccchHHHHHHHH
Q 005234 217 LEKDGDVVAQAQAIAALEALP---HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-----TDWAGLLHLVKFY 288 (707)
Q Consensus 217 Lq~DrDVvAQlEAI~aL~~~p---~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~-----~~~~Gl~~Lik~F 288 (707)
|.+|.|.--+-.|+++|-... ..+....+-..+.+.|+ |--||.+|.+.+.-+++-. ....-..+--.+|
T Consensus 206 ~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~--~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF 283 (823)
T KOG2259|consen 206 LEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDD--YEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAF 283 (823)
T ss_pred HhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHH
Confidence 788999988888888754322 12323445566777888 9999999999988777632 1112244555677
Q ss_pred HhccCCC----CCC--C---CCCCCCCChhHHHHHHHHHHH-hhcccccCCCChHHHHHHHHHHH-------------hh
Q 005234 289 KSRRFDE----NIG--L---PRPNDFRDFSEYFVLEAIPHA-VAMVRAADNKSPREAVEFVLQLL-------------KY 345 (707)
Q Consensus 289 k~~~~~~----~s~--i---PkpNdFsdf~~YfVqkAIp~A-La~vRd~~g~~P~ev~~fLldlL-------------ky 345 (707)
.+. |.. ... + -+=-+|...++-|+++.+-+= |+++|... +..+.-.-|..=. +.
T Consensus 284 ~~v-C~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr--~ahkrpk~l~s~GewSsGk~~~advpse 360 (823)
T KOG2259|consen 284 SSV-CRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKR--TAHKRPKALYSSGEWSSGKEWNADVPSE 360 (823)
T ss_pred HHH-HHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhh--hcccchHHHHhcCCcccCccccccCchh
Confidence 764 422 111 0 122345566788888887654 34344321 1111111111000 00
Q ss_pred cCCCC--------------CCCChhHH--HHHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHH
Q 005234 346 NDNNG--------------NPYSDVFW--LAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIR 409 (707)
Q Consensus 346 NDNS~--------------N~ysDs~Y--vA~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~ 409 (707)
.||.+ -.+.|-|| +-+++.||+.+..+ ...|..+.++-|...+|-| -.+|..-||.
T Consensus 361 e~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s--sP~FA~~aldfLvDMfNDE------~~~VRL~ai~ 432 (823)
T KOG2259|consen 361 EDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS--SPGFAVRALDFLVDMFNDE------IEVVRLKAIF 432 (823)
T ss_pred hccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhccH------HHHHHHHHHH
Confidence 01111 13789999 37888999887643 2336666666666666522 2467778888
Q ss_pred HHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhh-ccCChhHHHHHHHHHHhcCccchhh-----hH
Q 005234 410 TLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF-HCNGIDSALSLFIKSVEEEPSLRGQ-----VK 483 (707)
Q Consensus 410 ~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~-~~~g~~~al~~~l~~l~~dp~~r~~-----~~ 483 (707)
+|..+.. .+.|..|.+-.++. .-.+...+||.++-+.|-..-+ ...++.-++.-++..+..-|-.|-. .+
T Consensus 433 aL~~Is~--~l~i~eeql~~il~--~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~ 508 (823)
T KOG2259|consen 433 ALTMISV--HLAIREEQLRQILE--SLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGR 508 (823)
T ss_pred HHHHHHH--HheecHHHHHHHHH--HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHH
Confidence 8888763 35565443322222 2234567899888777665422 1233345566667777666655332 11
Q ss_pred HH--------HHhhhHHHhh-CCCCCCCCCCcHHHHHHHHHhcccccccc---chhhhhHHHHHHHhhcCCCcccCC
Q 005234 484 LG--------IHAMRICQIK-GGSDSNHEVDTVTLVALLNLLESRIAFNN---VFLRHHLFGILQILAGRAPTLYGV 548 (707)
Q Consensus 484 ~~--------~~~~~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~d---~~lR~~~~~~~~~L~g~~~~l~g~ 548 (707)
++ .-.-++.-.- .-.+..+.+.++..+..|-...|-..++= +.+=-....-|..|+.-.|-|.|-
T Consensus 509 iGqnH~~lv~s~m~rfl~kh~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii~s~Pea~hrhla~Lr~sspnLv~~ 585 (823)
T KOG2259|consen 509 IGQNHRRLVLSNMGRFLEKHTSFATIEPSLEDGFYIAKLILVRNAARADPGIIVSRPEAHHRHLAILRCSSPNLVGD 585 (823)
T ss_pred HhccChhhHHHHHHHHHHhcccccccCccccChhhhhhhhhhhhhhhhCCCeeeechHHHHHHHHHHhccCCCCCCc
Confidence 11 1111221111 11224677999999988887776444320 111122334445578778888773
No 41
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.60 E-value=1.9e+02 Score=36.19 Aligned_cols=282 Identities=17% Similarity=0.176 Sum_probs=145.0
Q ss_pred CCCccEEEEcCCCceEE---EEeccCCHHHHHHHHhh----CCChHHHHHHHHHHHhCCC------ChHHHHHHHHH---
Q 005234 186 ESPLSWIRADPEMEYLA---EIHFNQPVQMWINQLEK----DGDVVAQAQAIAALEALPH------LSFNVVNTLNN--- 249 (707)
Q Consensus 186 ~~p~eWIRvDpd~ewL~---~V~~~QPd~Mw~sQLq~----DrDVvAQlEAI~aL~~~p~------~s~~~v~aL~r--- 249 (707)
....+-+++++|-|.=+ .-++++|.+.-+.||-+ .+|+..|++-.-.....|. ....-.+.|.+
T Consensus 626 ~~t~e~v~~t~d~evee~~e~~~i~~~~~~~Vlml~qttl~~~d~~i~l~e~~~~~a~~~~eQ~~n~~t~e~~~Ll~~~I 705 (982)
T KOG4653|consen 626 QHTKELVHITKDLEVEESREQEEIDQPILLLVLMLLQTTLEMGDEEIQLEEAPIAAAKPLKEQLFNLGTREINPLLQQSI 705 (982)
T ss_pred hhhHHHHhcCCchhhhhhhhhhhcchHHHHHHHHHHHHHHhcCccccccccchhhhccchHHHHhhccccccchHHhccc
Confidence 45678888888887755 34567787877888743 3677777743211111111 11011122322
Q ss_pred --HhcC-------CCccHHHHHHH-HHHHhccccccc--ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHH
Q 005234 250 --FLSD-------SKAFWRVRIEA-AYALANTASEET--DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAI 317 (707)
Q Consensus 250 --tL~D-------~ryFygVR~eA-A~ALak~a~~~~--~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAI 317 (707)
.+-+ ++ =|.|-.+- =+|+.....++. .-.|+.-|...+++++=+ ++ -+-.+-+
T Consensus 706 ~~~lvn~ptt~rsd~-~~s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~-----~~---------~~~ekvl 770 (982)
T KOG4653|consen 706 DSLLVNIPTTRRSDR-RYSVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKA-----TL---------IQGEKVL 770 (982)
T ss_pred hhhhccCCCCccccc-cccccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchh-----hh---------hhHHHHH
Confidence 1111 11 22222221 123333333322 224677777777765211 11 1234455
Q ss_pred HHHhhcccccCCCChHHHHH------------HHHHHHhhcCCCCCCC--ChhHHHH----HHHHHhhcccccccchHHH
Q 005234 318 PHAVAMVRAADNKSPREAVE------------FVLQLLKYNDNNGNPY--SDVFWLA----ALVQSVGELEFGQQSILFL 379 (707)
Q Consensus 318 p~ALa~vRd~~g~~P~ev~~------------fLldlLkyNDNS~N~y--sDs~YvA----~lI~ALg~~~~~~~~~~~l 379 (707)
-.++-.++|.|...+-.|.+ .|=+++.|=+|++|.- ++---|. .++.++|.+.+. +.
T Consensus 771 ~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~-----y~ 845 (982)
T KOG4653|consen 771 AIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK-----YK 845 (982)
T ss_pred HHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHH-----HH
Confidence 56677777877655555444 4556667667777766 3333332 344555554322 22
Q ss_pred HHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChH--HHHHhhhcccCCCCcHHHHHHHHHHhhhhhhc
Q 005234 380 SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLD--QVVKLIKPFRDFNTIWQVRVEASRALLDLEFH 457 (707)
Q Consensus 380 ~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d--~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~ 457 (707)
+.++. -++.. +. +.-+.+..+.+..+..|+...++..+-. +++..+..-...+.+..||+||+..+.++-..
T Consensus 846 ~~Li~---tfl~g--vr-epd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 846 AVLIN---TFLSG--VR-EPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHH---HHHHh--cC-CchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 32322 23332 11 3377778888888888877667655531 22333334455577889999999999887421
Q ss_pred cCChh----------HHHHHHHHHHhcCccchhh--hHHHHHhhhHHHh
Q 005234 458 CNGID----------SALSLFIKSVEEEPSLRGQ--VKLGIHAMRICQI 494 (707)
Q Consensus 458 ~~g~~----------~al~~~l~~l~~dp~~r~~--~~~~~~~~~~~~~ 494 (707)
-|.+ +.......++..||+...+ ..+..+.+..+..
T Consensus 920 -tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 920 -TGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE 967 (982)
T ss_pred -cchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 1111 1223345556666665333 4444444444444
No 42
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=60.33 E-value=5.9e+02 Score=35.26 Aligned_cols=73 Identities=21% Similarity=0.063 Sum_probs=48.0
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHH
Q 005234 213 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLH 283 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~ 283 (707)
..-+|-...|-..|.+|+.+|.....++. .++..|.+.|.+. -++++..|+.+|..+..... -..+..
T Consensus 492 ~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d-~~~I~~ 568 (2102)
T PLN03200 492 PLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTAD-AATISQ 568 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccc-hhHHHH
Confidence 34445567788999999999986543221 1245677788766 57999999999999865322 112345
Q ss_pred HHHHH
Q 005234 284 LVKFY 288 (707)
Q Consensus 284 Lik~F 288 (707)
|...+
T Consensus 569 Lv~LL 573 (2102)
T PLN03200 569 LTALL 573 (2102)
T ss_pred HHHHh
Confidence 55443
No 43
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=59.47 E-value=1.7e+02 Score=34.33 Aligned_cols=189 Identities=14% Similarity=0.082 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhccc-ccccchHHHHHHHHHHHH
Q 005234 310 EYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELE-FGQQSILFLSSLLKRIDR 388 (707)
Q Consensus 310 ~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~-~~~~~~~~l~~vl~eI~R 388 (707)
..-.++.+..||+.+=+ ..+..++.++++.++= ...-.+.++.+|.... .+ -..+++++..
T Consensus 377 ~~~~r~~~lDal~~aGT------~~av~~i~~~I~~~~~------~~~ea~~~l~~l~~~~~~P------t~e~l~~l~~ 438 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGT------NPAVKFIKDLIKSKKL------TDDEAAQLLASLPFHVRRP------TEELLKELFE 438 (618)
T ss_dssp -HHHHHHHHHHHHHH-S------HHHHHHHHHHHHTT-S-------HHHHHHHHHHHHHT-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCC------CHHHHHHHHHHHHhhcCCC------CHHHHHHHHH
Confidence 34467777777776532 4677999999987542 2333456666666543 22 1345555555
Q ss_pred HHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCC------------ChHHHHHhhhcccC---CCCcHHHHHHHHHHhhh
Q 005234 389 LLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI------------SLDQVVKLIKPFRD---FNTIWQVRVEASRALLD 453 (707)
Q Consensus 389 ~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i------------~~d~~~~ll~~yt~---~g~~~~vRiaA~~aL~~ 453 (707)
+...+... -+..+..+|+-++..|..+.+..- ..+.+...+..... ...-..-++.+++||+-
T Consensus 439 L~~~~~~~--~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN 516 (618)
T PF01347_consen 439 LAKSPKVK--NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGN 516 (618)
T ss_dssp HHT-HHHH--T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCcccc--CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhc
Confidence 55533221 223455666666666654444431 01111111111111 12234788999999998
Q ss_pred hhhccCChhHHHHHHHHHHhcC-ccchhhhHHHHHhhhHHHhhCCCCCCCCCCcH-HHHHHHHH-hccccccccchhhhh
Q 005234 454 LEFHCNGIDSALSLFIKSVEEE-PSLRGQVKLGIHAMRICQIKGGSDSNHEVDTV-TLVALLNL-LESRIAFNNVFLRHH 530 (707)
Q Consensus 454 l~~~~~g~~~al~~~l~~l~~d-p~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~-~~~~~~~~d~~lR~~ 530 (707)
+|.. .++..++.+++.+ +.+. .+|++++...+ +..-..| .+.+.++. +.|. .+|.-+|..
T Consensus 517 ~g~~-----~~i~~l~~~i~~~~~~~~--------~~R~~Ai~Alr--~~~~~~~~~v~~~l~~I~~n~--~e~~EvRia 579 (618)
T PF01347_consen 517 LGHP-----ESIPVLLPYIEGKEEVPH--------FIRVAAIQALR--RLAKHCPEKVREILLPIFMNT--TEDPEVRIA 579 (618)
T ss_dssp HT-G-----GGHHHHHTTSTTSS-S-H--------HHHHHHHHTTT--TGGGT-HHHHHHHHHHHHH-T--TS-HHHHHH
T ss_pred cCCc-----hhhHHHHhHhhhccccch--------HHHHHHHHHHH--HHhhcCcHHHHHHHHHHhcCC--CCChhHHHH
Confidence 7632 3566666666554 2221 22344444333 1112334 44444443 3332 346789999
Q ss_pred HHHHH
Q 005234 531 LFGIL 535 (707)
Q Consensus 531 ~~~~~ 535 (707)
++.+|
T Consensus 580 A~~~l 584 (618)
T PF01347_consen 580 AYLIL 584 (618)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88775
No 44
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=57.38 E-value=1.9e+02 Score=33.69 Aligned_cols=219 Identities=20% Similarity=0.187 Sum_probs=119.8
Q ss_pred cCCHHHHHHHHhhCCChHHHHHHHHHHHhCCCChHHH--------HHHHHHHhcCCCccHHHHHHHHHHHhccccccc--
Q 005234 207 NQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNV--------VNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 276 (707)
Q Consensus 207 ~QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~--------v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~-- 276 (707)
+..-+-.+-++-.|+|......|+..|.+..+.+... ...|...+..+ -=-||+.+...+..++....
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCHHH
Confidence 3345777788889999999999999998775443211 23344444432 22466667777777654321
Q ss_pred ----ccchH-HHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhccc-ccCCCChH---HHHHHHHHHHhhcC
Q 005234 277 ----DWAGL-LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR-AADNKSPR---EAVEFVLQLLKYND 347 (707)
Q Consensus 277 ----~~~Gl-~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vR-d~~g~~P~---ev~~fLldlLkyND 347 (707)
.-.|+ ..+++.++ + .+-.||.+...-|+.+= ..+|...- .+.+-|.++|...
T Consensus 195 ~~~~~~sgll~~ll~eL~-----------------~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~- 255 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELD-----------------S-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDS- 255 (503)
T ss_pred HHHHHhccHHHHHHHHhc-----------------C-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcc-
Confidence 11232 23333222 1 45568877777666553 33443222 2666677777654
Q ss_pred CCCCCCChhHHHHHHHHHhhcccccccchHHH---HHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCCh
Q 005234 348 NNGNPYSDVFWLAALVQSVGELEFGQQSILFL---SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL 424 (707)
Q Consensus 348 NS~N~ysDs~YvA~lI~ALg~~~~~~~~~~~l---~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~ 424 (707)
+.++=..++|+-..++..|++... +...+. ..+++.+.+.+ -|-.-....+|++++..++....|..-+
T Consensus 256 -~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~------~s~d~~~~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 256 -EEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSML------ESQDPTIREVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred -ccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHh------CCCChhHHHHHHHHHHHHhCCHHHHHHH
Confidence 333435568998999999987643 111122 22333333332 2555566677777777766322221111
Q ss_pred -----HHHHHhhhcccCC--CCcHHHHHHHHHHhhhh
Q 005234 425 -----DQVVKLIKPFRDF--NTIWQVRVEASRALLDL 454 (707)
Q Consensus 425 -----d~~~~ll~~yt~~--g~~~~vRiaA~~aL~~l 454 (707)
+.+...+..|... ..+.++|+.|+.||..+
T Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 328 LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1111122222222 23468899999988876
No 45
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=56.91 E-value=19 Score=28.36 Aligned_cols=17 Identities=47% Similarity=0.432 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhccccc
Q 005234 258 WRVRIEAAYALANTASE 274 (707)
Q Consensus 258 ygVR~eAA~ALak~a~~ 274 (707)
|.||..|+.+|+.++..
T Consensus 1 p~vR~~A~~aLg~l~~~ 17 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG 17 (55)
T ss_dssp HHHHHHHHHHHHCTTTT
T ss_pred CHHHHHHHHHHhhHhcc
Confidence 78999999999987643
No 46
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=55.43 E-value=40 Score=30.73 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCcHHHHHHHHHHhhhhhhccCChhHHHHHHHHH------HhcCccchhh
Q 005234 438 NTIWQVRVEASRALLDLEFHCNGIDSALSLFIKS------VEEEPSLRGQ 481 (707)
Q Consensus 438 g~~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~~------l~~dp~~r~~ 481 (707)
+.-+.||..|.|+|..+....++. .+.+|-++ +..||+++++
T Consensus 38 D~d~rVRy~AcEaL~ni~k~~~~~--~l~~f~~IF~~L~kl~~D~d~~Vr 85 (97)
T PF12755_consen 38 DQDSRVRYYACEALYNISKVARGE--ILPYFNEIFDALCKLSADPDENVR 85 (97)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCchhHH
Confidence 455899999999999998776543 44443333 3467777665
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.92 E-value=4e+02 Score=33.06 Aligned_cols=214 Identities=16% Similarity=0.185 Sum_probs=119.3
Q ss_pred hCCChHHHHHHHHHHHhCCCChH-HHHHHHHHHhcCCCccHHHHHHHHHHHhcc--cccc-------cccchHHHHH---
Q 005234 219 KDGDVVAQAQAIAALEALPHLSF-NVVNTLNNFLSDSKAFWRVRIEAAYALANT--ASEE-------TDWAGLLHLV--- 285 (707)
Q Consensus 219 ~DrDVvAQlEAI~aL~~~p~~s~-~~v~aL~rtL~D~ryFygVR~eAA~ALak~--a~~~-------~~~~Gl~~Li--- 285 (707)
..+|--.|..|-..|++..+..+ .....|...|.|+..---+|+.|...|-.. +++. ..|.++++=+
T Consensus 11 lSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~req 90 (859)
T KOG1241|consen 11 LSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQ 90 (859)
T ss_pred cCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHH
Confidence 34566677777777776543211 356778899999998999999999999774 3322 2577765432
Q ss_pred -HHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHH
Q 005234 286 -KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQ 364 (707)
Q Consensus 286 -k~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ 364 (707)
|.+-..=- +++.|+ | .. .--..+.++|.+--+++.-|.-+..+.-+ -+++-+- ....+.++
T Consensus 91 VK~~il~tL--~~~ep~---~---~s--~Aaq~va~IA~~ElP~n~wp~li~~lv~n-------v~~~~~~-~~k~~sle 152 (859)
T KOG1241|consen 91 VKNNILRTL--GSPEPR---R---PS--SAAQCVAAIACIELPQNQWPELIVTLVSN-------VGEEQAS-MVKESSLE 152 (859)
T ss_pred HHHHHHHHc--CCCCCC---c---cc--hHHHHHHHHHHhhCchhhCHHHHHHHHHh-------cccccch-HHHHHHHH
Confidence 22211000 112222 1 00 22334667777766676666655554432 2222232 34478899
Q ss_pred Hhhccc--ccccch-HHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcC-CCChHHHHHhhhccc---CC
Q 005234 365 SVGELE--FGQQSI-LFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG-FISLDQVVKLIKPFR---DF 437 (707)
Q Consensus 365 ALg~~~--~~~~~~-~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g-~i~~d~~~~ll~~yt---~~ 437 (707)
|||.+. +..+.. .-...++.+|....+..+ | .+-|..+++.+|..- +-+.+ ....|.=..++.+-. -.
T Consensus 153 alGyice~i~pevl~~~sN~iLtaIv~gmrk~e--~--s~~vRLaa~~aL~ns-Lef~~~nF~~E~ern~iMqvvcEatq 227 (859)
T KOG1241|consen 153 ALGYICEDIDPEVLEQQSNDILTAIVQGMRKEE--T--SAAVRLAALNALYNS-LEFTKANFNNEMERNYIMQVVCEATQ 227 (859)
T ss_pred HHHHHHccCCHHHHHHHHhHHHHHHHhhccccC--C--chhHHHHHHHHHHHH-HHHHHHhhccHhhhceeeeeeeeccc
Confidence 999863 111111 112358889999888553 3 456888999888663 22222 111121111111110 11
Q ss_pred CCcHHHHHHHHHHhhhhh
Q 005234 438 NTIWQVRVEASRALLDLE 455 (707)
Q Consensus 438 g~~~~vRiaA~~aL~~l~ 455 (707)
+.-..||.|||.||+++.
T Consensus 228 ~~d~~i~~aa~~ClvkIm 245 (859)
T KOG1241|consen 228 SPDEEIQVAAFQCLVKIM 245 (859)
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 233689999999999963
No 48
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=52.36 E-value=22 Score=24.90 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHhcCC
Q 005234 224 VAQAQAIAALEALPHLSFNVVNTLNNFLSDS 254 (707)
Q Consensus 224 vAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ 254 (707)
.-|.+|+.+|++.+.+ .++..|.++|.|+
T Consensus 2 ~vR~~aa~aLg~~~~~--~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQLGDE--EAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHcCCH--hHHHHHHHHhcCC
Confidence 3588999999998765 5789999999874
No 49
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=51.45 E-value=20 Score=42.18 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=45.3
Q ss_pred hhhccC-hHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCC-ccC-h-hhHHhhhccCCCcceE
Q 005234 2 LEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLE-RPF-L-KEFFPRWVGTCGCPVL 67 (707)
Q Consensus 2 Lek~iG-~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~-g~d-L-~~FFdQWVygsG~P~f 67 (707)
||+++| ++.|..-|++|+... +..+|.|.+|..+.-+-.--. .++ + .-=||.|.+++|-|..
T Consensus 392 Le~~lG~~~~Fd~FLr~Yv~kf----a~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~ 457 (613)
T KOG1047|consen 392 LEQLLGDPTRFDPFLRAYVHKF----AFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPP 457 (613)
T ss_pred HHHHhCChhhHHHHHHHHHHHh----ccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCC
Confidence 789998 667777999999998 466999999988775543100 011 1 1247999999999954
No 50
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=49.65 E-value=1.4e+02 Score=31.97 Aligned_cols=141 Identities=20% Similarity=0.210 Sum_probs=77.3
Q ss_pred HHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCC-C-hhHH-HHHHHHHhhcccccccchHHHHHHHHHHHHHH
Q 005234 314 LEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPY-S-DVFW-LAALVQSVGELEFGQQSILFLSSLLKRIDRLL 390 (707)
Q Consensus 314 qkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~y-s-Ds~Y-vA~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l 390 (707)
++||-.|+. ++.++..-|+++|..--+..|.. + +++- .--.+--|+... ..+++..|-+++
T Consensus 19 ~~al~~A~~--------~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~r--------e~~A~~~li~l~ 82 (249)
T PF06685_consen 19 REALEAAIE--------QREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFR--------EERALPPLIRLF 82 (249)
T ss_pred HHHHHHHHH--------CHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHh--------hhhhHHHHHHHH
Confidence 366666655 46788888888886532222222 2 2221 112222233221 224556677777
Q ss_pred hcCcCC--CCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCC-hhHHHHH
Q 005234 391 QFDRLM--PSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNG-IDSALSL 467 (707)
Q Consensus 391 ~lD~~~--PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g-~~~al~~ 467 (707)
+.|.=. -=.++.+|-.--..++.++ .|. .+.+.+++ -+++...-+|.+|+++|.-+.....- .+..++|
T Consensus 83 ~~~~~~~~~l~GD~~tE~l~~ilasv~---~G~--~~~L~~li---~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~ 154 (249)
T PF06685_consen 83 SQDDDFLEDLFGDFITEDLPRILASVG---DGD--IEPLKELI---EDPDADEYVRMAAISALAFLVHEGPISREEVIQY 154 (249)
T ss_pred cCCcchHHHHHcchhHhHHHHHHHHHh---CCC--HHHHHHHH---hCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 654210 0135666666666667764 342 34454444 34566788999999999998754322 2466777
Q ss_pred HHHHH----hcCccc
Q 005234 468 FIKSV----EEEPSL 478 (707)
Q Consensus 468 ~l~~l----~~dp~~ 478 (707)
|..++ +.+|+.
T Consensus 155 f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 155 FRELLNYFLERNPSF 169 (249)
T ss_pred HHHHHHHHhccCchH
Confidence 66665 445554
No 51
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=48.98 E-value=2.9e+02 Score=27.81 Aligned_cols=54 Identities=15% Similarity=0.016 Sum_probs=28.5
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCCCC-hHHH-HHhhhcccCCCCcHHHHHHHHHHhhhhhh
Q 005234 398 SYNGILTISCIRTLTQIALKLSGFIS-LDQV-VKLIKPFRDFNTIWQVRVEASRALLDLEF 456 (707)
Q Consensus 398 SY~~vVTvacL~~L~~L~~~~~g~i~-~d~~-~~ll~~yt~~g~~~~vRiaA~~aL~~l~~ 456 (707)
+-+.+|.-+|..+|..+. ..++ ...+ ...+.... ...-..+|..+.++|..+..
T Consensus 105 ~~~~~i~~~a~~~L~~i~----~~~~~~~~~~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 105 DSKKFIREAANNALDAII----ESCSYSPKILLEILSQGL-KSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp ---HHHHHHHHHHHHHHH----TTS-H--HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHH----HHCCcHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHH
Confidence 335567777777777764 2233 2233 33444322 33447899999998887643
No 52
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=48.36 E-value=5e+02 Score=30.25 Aligned_cols=216 Identities=17% Similarity=0.156 Sum_probs=111.3
Q ss_pred CCChHHHHHHHHHHHhCCCCh---------HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHH-----H
Q 005234 220 DGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHL-----V 285 (707)
Q Consensus 220 DrDVvAQlEAI~aL~~~p~~s---------~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~L-----i 285 (707)
.++-..|.-|+..+++.-.++ ..+...+..+|.|+ =-.|-..|+.+|.+++.... |+..| +
T Consensus 88 h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~--d~~Va~~A~~~L~~l~~~~~---~~~~l~~~~~~ 162 (503)
T PF10508_consen 88 HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP--DLSVAKAAIKALKKLASHPE---GLEQLFDSNLL 162 (503)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC--cHHHHHHHHHHHHHHhCCch---hHHHHhCcchH
Confidence 355666666666665532111 12455677888877 46889999999999986432 33333 2
Q ss_pred HHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHH--HHHHHHhhcCCCCCCCChhHHHHHHH
Q 005234 286 KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVE--FVLQLLKYNDNNGNPYSDVFWLAALV 363 (707)
Q Consensus 286 k~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~--fLldlLkyNDNS~N~ysDs~YvA~lI 363 (707)
..++.....+ +.+ ..+.+-..++...+ .+..+...+.. ++-.+++.=++ +|--...+++
T Consensus 163 ~~L~~l~~~~-~~~---------vR~Rv~el~v~i~~----~S~~~~~~~~~sgll~~ll~eL~~-----dDiLvqlnal 223 (503)
T PF10508_consen 163 SKLKSLMSQS-SDI---------VRCRVYELLVEIAS----HSPEAAEAVVNSGLLDLLLKELDS-----DDILVQLNAL 223 (503)
T ss_pred HHHHHHHhcc-CHH---------HHHHHHHHHHHHHh----cCHHHHHHHHhccHHHHHHHHhcC-----ccHHHHHHHH
Confidence 2222211111 112 22333333333221 11112222222 33333332211 4555557888
Q ss_pred HHhhcccccccchHHHH--HHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHh-cCCCC-hHHHHHhhhcccCCCC
Q 005234 364 QSVGELEFGQQSILFLS--SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKL-SGFIS-LDQVVKLIKPFRDFNT 439 (707)
Q Consensus 364 ~ALg~~~~~~~~~~~l~--~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~-~g~i~-~d~~~~ll~~yt~~g~ 439 (707)
+-|+.+.....+..++. .+++.|...+.-..--|....++..+.++-...++..- ...+. +..+...+.... ...
T Consensus 224 ell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~-~s~ 302 (503)
T PF10508_consen 224 ELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSML-ESQ 302 (503)
T ss_pred HHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh-CCC
Confidence 88887655444455554 37777777776555556466677777777766765310 00000 011111122111 123
Q ss_pred cHHHHHHHHHHhhhhhhccCC
Q 005234 440 IWQVRVEASRALLDLEFHCNG 460 (707)
Q Consensus 440 ~~~vRiaA~~aL~~l~~~~~g 460 (707)
-...|..|+++|+-++....|
T Consensus 303 d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 303 DPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred ChhHHHHHHHHHHHHhCCHHH
Confidence 467899999999998865554
No 53
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=48.04 E-value=7.1e+02 Score=31.93 Aligned_cols=183 Identities=20% Similarity=0.261 Sum_probs=91.4
Q ss_pred CCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCCh
Q 005234 253 DSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP 332 (707)
Q Consensus 253 D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P 332 (707)
|+..-|.||-+||++|...-... ...|..+|++ .=|.-++++++..-..-
T Consensus 341 DeD~SWkVRRaAaKcl~a~IsSR-----~E~L~~~~q~-------------------------l~p~lI~RfkEREEnVk 390 (1233)
T KOG1824|consen 341 DEDMSWKVRRAAAKCLEAVISSR-----LEMLPDFYQT-------------------------LGPALISRFKEREENVK 390 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHhcc-----HHHHHHHHHH-------------------------hCHHHHHHHHHHhhhHH
Confidence 45678999999999999876643 3455555544 33666777765443344
Q ss_pred HHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccchHHH----HHHHHHHHHHHhcCcCCCCcccHhHHHHH
Q 005234 333 REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFL----SSLLKRIDRLLQFDRLMPSYNGILTISCI 408 (707)
Q Consensus 333 ~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~~~l----~~vl~eI~R~l~lD~~~PSY~~vVTvacL 408 (707)
.++....+.+|+.--+-.--|.|.= .++- |-.. .+...+ -.+++-|.+.++ ++-+| -..+|+
T Consensus 391 ~dvf~~yi~ll~qt~~~~~~~~d~d----~~e~-~g~~---s~~~~L~~~~~~iVkai~~qlr-~ks~k-----t~~~cf 456 (1233)
T KOG1824|consen 391 ADVFHAYIALLKQTRPVIEVLADND----AMEQ-GGTP---SDLSMLSDQVPLIVKAIQKQLR-EKSVK-----TRQGCF 456 (1233)
T ss_pred HHHHHHHHHHHHcCCCCcccccCch----hhhc-cCCc---cchHHHHhhhHHHHHHHHHHHh-hcccc-----chhhHH
Confidence 4566666666665433322222210 0000 1000 011111 235666777777 44455 235677
Q ss_pred HHHHHHHHHhcCCC--ChHH-HHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCCh-----hHHHHHHHHHHhcCccch
Q 005234 409 RTLTQIALKLSGFI--SLDQ-VVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI-----DSALSLFIKSVEEEPSLR 479 (707)
Q Consensus 409 ~~L~~L~~~~~g~i--~~d~-~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~-----~~al~~~l~~l~~dp~~r 479 (707)
.-|..|....-|.+ +.+. +=.....+++.......++.|+-.|.-.--.++.. -.+|.-.+...-.||.+.
T Consensus 457 ~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyK 535 (1233)
T KOG1824|consen 457 LLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYK 535 (1233)
T ss_pred HHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHh
Confidence 66666642111110 0111 11123345566666788888887776542211111 133443444444566654
No 54
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.68 E-value=2.7e+02 Score=32.91 Aligned_cols=207 Identities=20% Similarity=0.227 Sum_probs=117.1
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccc---
Q 005234 210 VQMWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD--- 277 (707)
Q Consensus 210 d~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~--- 277 (707)
---++.=|.++.+-.-|.||..+|....+.+. .++-+|...+..+ .-.||-.|+-||+.++.+.+.
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~--~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP--SADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC--cHHHHHHHHHHHhccccCChHHHH
Confidence 34445556566666779999999987755321 1355677888777 889999999999999987542
Q ss_pred ----cchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhccc-ccCCCChH-----HHHHHHHHHHhhcC
Q 005234 278 ----WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR-AADNKSPR-----EAVEFVLQLLKYND 347 (707)
Q Consensus 278 ----~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vR-d~~g~~P~-----ev~~fLldlLkyND 347 (707)
...+..|+..+... .+ + -+.+.+..+|+.+= ..+ -.|+ .+...|+.+|..
T Consensus 189 ~vl~~g~l~pLl~~l~~~-------~~----~------~~lRn~tW~LsNlcrgk~-P~P~~~~v~~iLp~L~~ll~~-- 248 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKS-------DK----L------SMLRNATWTLSNLCRGKN-PSPPFDVVAPILPALLRLLHS-- 248 (514)
T ss_pred HHHhhcchHHHHHHhccc-------cc----h------HHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHhc--
Confidence 22366777665431 11 1 14566667777653 322 2333 356677777775
Q ss_pred CCCCCCChhHHHHHHHHHhhcccccccch-H-H-HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHH---------
Q 005234 348 NNGNPYSDVFWLAALVQSVGELEFGQQSI-L-F-LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA--------- 415 (707)
Q Consensus 348 NS~N~ysDs~YvA~lI~ALg~~~~~~~~~-~-~-l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~--------- 415 (707)
.|..-++.+.-||+.+.-+.... . . ...+.-.+..+|.-+ +.+ |-+.||+++....
T Consensus 249 ------~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~----~~~--v~~PaLRaiGNIvtG~d~QTq~ 316 (514)
T KOG0166|consen 249 ------TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS----SPK--VVTPALRAIGNIVTGSDEQTQV 316 (514)
T ss_pred ------CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC----Ccc--cccHHHhhccceeeccHHHHHH
Confidence 34666688888888764221111 1 1 123455566666522 221 2244555443311
Q ss_pred HHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhh
Q 005234 416 LKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 456 (707)
Q Consensus 416 ~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~ 456 (707)
...+|.+|. +-.++. ......+|-+|...+--+..
T Consensus 317 vi~~~~L~~--l~~ll~----~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 317 VINSGALPV--LSNLLS----SSPKESIKKEACWTISNITA 351 (514)
T ss_pred HHhcChHHH--HHHHhc----cCcchhHHHHHHHHHHHhhc
Confidence 122344442 111111 11223488888888877653
No 55
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=44.30 E-value=3.1e+02 Score=29.37 Aligned_cols=129 Identities=17% Similarity=0.123 Sum_probs=72.1
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCC--------------hhH
Q 005234 398 SYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNG--------------IDS 463 (707)
Q Consensus 398 SY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g--------------~~~ 463 (707)
|-...|..-+++||.-.++ ....+..+.+.-++..+ .. ....||+.|+++++|+....+- ...
T Consensus 38 ~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~-~~-~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~ 114 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQAL-QK-DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKS 114 (298)
T ss_pred CCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHH-Hh-CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhH
Confidence 6666788888888877653 22322223322222333 33 3889999999999998643221 124
Q ss_pred HHHHHHHHHhcCccchhhhHHHHHhhhHHHhhCCCCCCCCCCc-HHHHHHHHH-hccccccccchhhhhHHHHHHH
Q 005234 464 ALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDT-VTLVALLNL-LESRIAFNNVFLRHHLFGILQI 537 (707)
Q Consensus 464 al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~l~~-~~~~~~~~d~~lR~~~~~~~~~ 537 (707)
.+++|.+++..+ ++..+. + +....+.=-. ..++.. +.++++|.. .-+-.+.+|.+||..+--++..
T Consensus 115 l~~~l~~~l~~~-~~~~~~-~---a~EGl~KLlL---~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~ 182 (298)
T PF12719_consen 115 LLKILTKFLDSE-NPELQA-I---AVEGLCKLLL---SGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPV 182 (298)
T ss_pred HHHHHHHHHhcC-CHHHHH-H---HHHHHHHHHh---cCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHH
Confidence 577888888665 333221 1 1111111111 133666 777775543 3355555678999887666544
No 56
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=43.27 E-value=3.6e+02 Score=32.59 Aligned_cols=51 Identities=27% Similarity=0.269 Sum_probs=30.5
Q ss_pred ccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHh
Q 005234 400 NGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRAL 451 (707)
Q Consensus 400 ~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL 451 (707)
|++|..||+.||.++++-......-..+..++.+ ...+.-..||-.|.=+|
T Consensus 500 N~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkR-clnD~DdeVRdrAsf~l 550 (898)
T COG5240 500 NNIVRSAAVQALSKFALNISDVVSPQSVENALKR-CLNDQDDEVRDRASFLL 550 (898)
T ss_pred hhHHHHHHHHHHHHhccCccccccHHHHHHHHHH-HhhcccHHHHHHHHHHH
Confidence 6788899999998888654444443444444433 33345566776554333
No 57
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=43.23 E-value=2.6e+02 Score=36.30 Aligned_cols=181 Identities=19% Similarity=0.199 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHhhcCCCC----------CCCChhHH--HHHHHHHhhcccc-----c-ccchHHHHHHHHHHHHHHhcC
Q 005234 332 PREAVEFVLQLLKYNDNNG----------NPYSDVFW--LAALVQSVGELEF-----G-QQSILFLSSLLKRIDRLLQFD 393 (707)
Q Consensus 332 P~ev~~fLldlLkyNDNS~----------N~ysDs~Y--vA~lI~ALg~~~~-----~-~~~~~~l~~vl~eI~R~l~lD 393 (707)
-.++.++|..+-+|-|.+. --+.|++- .|++++.|..+.. + .++.-|.+=++--|.++++ |
T Consensus 440 K~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~-d 518 (1431)
T KOG1240|consen 440 KLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLN-D 518 (1431)
T ss_pred HHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhc-c
Confidence 3456666655555544221 01344444 4777777776432 1 2233455667777888775 3
Q ss_pred cCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCC---cHHHHHHHHHHhhhhhhccCChhHHHHHHHH
Q 005234 394 RLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNT---IWQVRVEASRALLDLEFHCNGIDSALSLFIK 470 (707)
Q Consensus 394 ~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~---~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~ 470 (707)
. .++|-.+....||..|++.+..+ +.+......---+..+.. +..-=-+-..+|.. .++-.+.
T Consensus 519 ~-~~~~vRiayAsnla~LA~tA~rF---le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~----------~V~~~v~ 584 (1431)
T KOG1240|consen 519 S-SAQIVRIAYASNLAQLAKTAYRF---LELTQELRQAGMLNDPNSETAPEQNYNTELQALHH----------TVEQMVS 584 (1431)
T ss_pred C-ccceehhhHHhhHHHHHHHHHHH---HHHHHHHHhcccccCcccccccccccchHHHHHHH----------HHHHHHH
Confidence 2 66676666777777777765321 111110000000011100 00000011111111 2222344
Q ss_pred HHhcCccchhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHHHHhccccccccchhhhhHHHHH
Q 005234 471 SVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGIL 535 (707)
Q Consensus 471 ~l~~dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~d~~lR~~~~~~~ 535 (707)
.+..||.+.++--|+-.+..+|..=|...+ ++ .|+.-|..+.|- .|++||+..|+-+
T Consensus 585 sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks----ND-~iLshLiTfLND---kDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 585 SLLSDSPPIVKRALLESIIPLCVFFGKEKS----ND-VILSHLITFLND---KDWRLRGAFFDSI 641 (1431)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhhhccc----cc-chHHHHHHHhcC---ccHHHHHHHHhhc
Confidence 556888887776677668899998764421 23 344555555553 3999999999874
No 58
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=42.15 E-value=1.1e+02 Score=32.73 Aligned_cols=78 Identities=23% Similarity=0.318 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccchHHHHHHHHHHHHH
Q 005234 310 EYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRL 389 (707)
Q Consensus 310 ~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~~~l~~vl~eI~R~ 389 (707)
+=|++.|...||..+=..+-.+..+|.+.+.+++.++=+. +++|-...||.++.++. ...++.+|.++
T Consensus 126 ~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~----~~~~~~~~Lv~~~~dL~--------~~EL~~~I~~~ 193 (249)
T PF06685_consen 126 DEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLER----NPSFLWGSLVADICDLY--------PEELLPEIRKA 193 (249)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc----CchHHHHHHHHHHHhcC--------HHHhHHHHHHH
Confidence 4459999999999887666667889999999999886544 35555577777777653 45678899998
Q ss_pred HhcCcCCCCc
Q 005234 390 LQFDRLMPSY 399 (707)
Q Consensus 390 l~lD~~~PSY 399 (707)
...+-+-||+
T Consensus 194 f~~~lVd~~~ 203 (249)
T PF06685_consen 194 FEDGLVDPSF 203 (249)
T ss_pred HHcCCCCccc
Confidence 8765544433
No 59
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=41.36 E-value=10 Score=31.51 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=19.4
Q ss_pred CCccChhhHHhhhccCCCcceEEE
Q 005234 46 LERPFLKEFFPRWVGTCGCPVLRM 69 (707)
Q Consensus 46 ~~g~dL~~FFdQWVygsG~P~f~V 69 (707)
.+.+||..|+..|+-| |+|+++-
T Consensus 44 ~t~~dln~Flk~W~~G-~~~~Le~ 66 (70)
T PF07735_consen 44 FTNEDLNKFLKHWING-SNPRLEY 66 (70)
T ss_pred CCHHHHHHHHHHHHcC-CCcCCcE
Confidence 3457999999999999 9998853
No 60
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=41.36 E-value=2.3e+02 Score=28.59 Aligned_cols=134 Identities=18% Similarity=0.112 Sum_probs=63.3
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCCCC--hHHHHHhh-hcccCCCCcHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHhc
Q 005234 398 SYNGILTISCIRTLTQIALKLSGFIS--LDQVVKLI-KPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEE 474 (707)
Q Consensus 398 SY~~vVTvacL~~L~~L~~~~~g~i~--~d~~~~ll-~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~~l~~ 474 (707)
+-+..|..+++.++..++......+. .+.++..+ ....+ .-..+|-+|.+||..+..........+.-++.....
T Consensus 64 d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~--~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~ 141 (228)
T PF12348_consen 64 DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGD--SKKFIREAANNALDAIIESCSYSPKILLEILSQGLK 141 (228)
T ss_dssp HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHh
Confidence 44555666666666666644443321 11122222 22122 235799999999999876654122333445555557
Q ss_pred CccchhhhHHHHHhhhHHHhhCCCCCCCCCCc----HHHHHHHHHhccccccccchhhhhHHHHHHHh
Q 005234 475 EPSLRGQVKLGIHAMRICQIKGGSDSNHEVDT----VTLVALLNLLESRIAFNNVFLRHHLFGILQIL 538 (707)
Q Consensus 475 dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~l~~~l~~~~~~~~~~d~~lR~~~~~~~~~L 538 (707)
+..+..|...+. .+..+....+. +...+.. +.++..+..+.+. -|..+|..+...+..|
T Consensus 142 ~Kn~~vR~~~~~-~l~~~l~~~~~-~~~~l~~~~~~~~l~~~l~~~l~D---~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 142 SKNPQVREECAE-WLAIILEKWGS-DSSVLQKSAFLKQLVKALVKLLSD---ADPEVREAARECLWAL 204 (228)
T ss_dssp -S-HHHHHHHHH-HHHHHHTT------GGG--HHHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHccc-hHhhhcccchHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHH
Confidence 777765533332 22333333321 1334444 4466666555442 3788999987776655
No 61
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=39.89 E-value=2.3e+02 Score=28.02 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhccccccc
Q 005234 243 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET 276 (707)
Q Consensus 243 ~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~ 276 (707)
-...|.+.|..+. -|.||.||.+.||-+.-=++
T Consensus 11 LL~~L~~iLk~e~-s~~iR~E~lr~lGilGALDP 43 (160)
T PF11865_consen 11 LLDILLNILKTEQ-SQSIRREALRVLGILGALDP 43 (160)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHhhhccccCc
Confidence 4578889999886 59999999999999886554
No 62
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=36.72 E-value=1e+03 Score=30.58 Aligned_cols=112 Identities=18% Similarity=0.247 Sum_probs=68.7
Q ss_pred HHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCC-C--ChHHHHHhhhcccC
Q 005234 360 AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGF-I--SLDQVVKLIKPFRD 436 (707)
Q Consensus 360 A~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~-i--~~d~~~~ll~~yt~ 436 (707)
...|.+||.+..... ......+++.+ + +++-|+-+...+-+-|++|..++.+ +|+ + ..+.+..++..|+.
T Consensus 192 Kkai~~l~~la~~~~-~~ly~~li~~L---l--~~L~~~~q~~~~rt~Iq~l~~i~r~-ag~r~~~h~~~ivp~v~~y~~ 264 (1233)
T KOG1824|consen 192 KKAITALGHLASSCN-RDLYVELIEHL---L--KGLSNRTQMSATRTYIQCLAAICRQ-AGHRFGSHLDKIVPLVADYCN 264 (1233)
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHH---H--hccCCCCchHHHHHHHHHHHHHHHH-hcchhhcccchhhHHHHHHhc
Confidence 455666666443211 11223333333 3 3778889999988877777777644 332 2 23556667788884
Q ss_pred C--CCcHHHHHHHHHHhhhhhhccCCh-----hHHHHHHHHHHhcCccc
Q 005234 437 F--NTIWQVRVEASRALLDLEFHCNGI-----DSALSLFIKSVEEEPSL 478 (707)
Q Consensus 437 ~--g~~~~vRiaA~~aL~~l~~~~~g~-----~~al~~~l~~l~~dp~~ 478 (707)
. .....+|-..+++|-.|-..+.-. ...+.++++++.-||-.
T Consensus 265 ~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy 313 (1233)
T KOG1824|consen 265 KIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNY 313 (1233)
T ss_pred ccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCC
Confidence 2 356789988888777765433211 46788899998878765
No 63
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.62 E-value=9.2e+02 Score=29.91 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=69.5
Q ss_pred cCCCCcccHhHHH--HHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCChhHHHHHHHHH
Q 005234 394 RLMPSYNGILTIS--CIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKS 471 (707)
Q Consensus 394 ~~~PSY~~vVTva--cL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~~ 471 (707)
..+.+|++.+.+- =|+++.+++. .-.+..+..-+..|...-...-+| +|++|+++++.....-..++..|++.
T Consensus 320 ~Ff~kynDPiYvK~eKleil~~la~----~~nl~qvl~El~eYatevD~~fvr-kaIraig~~aik~e~~~~cv~~lLel 394 (734)
T KOG1061|consen 320 VFFCKYNDPIYVKLEKLEILIELAN----DANLAQVLAELKEYATEVDVDFVR-KAVRAIGRLAIKAEQSNDCVSILLEL 394 (734)
T ss_pred eeeeecCCchhhHHHHHHHHHHHhh----HhHHHHHHHHHHHhhhhhCHHHHH-HHHHHhhhhhhhhhhhhhhHHHHHHH
Confidence 3467888877754 3455556552 112344545556676665555555 79999999875432224578899999
Q ss_pred HhcCccc--hhhhHHHHHhhhHHHhh------CCCCCCCCCCcHHHHH-HHHHh
Q 005234 472 VEEEPSL--RGQVKLGIHAMRICQIK------GGSDSNHEVDTVTLVA-LLNLL 516 (707)
Q Consensus 472 l~~dp~~--r~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~l~~-~l~~~ 516 (707)
++..-+- -..+.+..+++|-+..+ ..+.+-..|+.|+-+. ++|++
T Consensus 395 l~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWil 448 (734)
T KOG1061|consen 395 LETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWIL 448 (734)
T ss_pred HhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHH
Confidence 9765443 22344555555554432 2233456687777665 45543
No 64
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=36.35 E-value=16 Score=42.51 Aligned_cols=69 Identities=30% Similarity=0.334 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchH----HHHHHHHHhccCCCCCCCCCCCCCCChhHHHH----
Q 005234 242 NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGL----LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFV---- 313 (707)
Q Consensus 242 ~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl----~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfV---- 313 (707)
.+-++|+..+.|.. -|+||+.||-+|+.-+..+....-+ ..|+.+ +.+.|+|-+|.+|--
T Consensus 573 ~~F~~L~~Lv~~~~-NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~a-----------Li~s~~~v~f~eY~~~Dsl 640 (728)
T KOG4535|consen 573 QAFNALTSLVTSCK-NFKVRIRAAAALSVPGKREQYGDQYALSWNALVTA-----------LQKSEDTIDFLEYKYCDSL 640 (728)
T ss_pred HHHHHHHHHHHHhc-cceEeehhhhhhcCCCCcccchhHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 35677877777765 7899999999999988865422222 223333 457889999999954
Q ss_pred HHHHHHHhh
Q 005234 314 LEAIPHAVA 322 (707)
Q Consensus 314 qkAIp~ALa 322 (707)
++.|+.|+.
T Consensus 641 ~~q~c~av~ 649 (728)
T KOG4535|consen 641 RTQICQALI 649 (728)
T ss_pred HHHHHHHHH
Confidence 444444443
No 65
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=36.26 E-value=5.4e+02 Score=27.48 Aligned_cols=102 Identities=23% Similarity=0.245 Sum_probs=63.0
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHhCCCChH--------HHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchH
Q 005234 210 VQMWINQLEKDGDVVAQAQAIAALEALPHLSF--------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGL 281 (707)
Q Consensus 210 d~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~--------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl 281 (707)
-.+.+.=|+..+|..-|-.|.-+++.....+. ..+..+...|.++ .-.||..|..+|...+....+
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~AL~aL~Nls~~~en---- 87 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREKALNALNNLSVNDEN---- 87 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHHHHHHHHhcCCChhh----
Confidence 34566777888999999999988887643211 1245566677666 789999999999988765322
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhccc
Q 005234 282 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR 325 (707)
Q Consensus 282 ~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vR 325 (707)
...++.|-..-|..-...| -+..+|.|-.++|..+=
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~--------lns~~Q~agLrlL~nLt 123 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSP--------LNSEVQLAGLRLLTNLT 123 (254)
T ss_pred HHHHHHHHHHHHHHHhcCC--------CCCHHHHHHHHHHHccC
Confidence 1223333332222100011 23347877777777663
No 66
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.94 E-value=2.7e+02 Score=34.36 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=56.1
Q ss_pred CCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhc---ccCCCCcHHHHHHHHHHhhhhhhccCCh-hHHHHHHHHH
Q 005234 396 MPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKP---FRDFNTIWQVRVEASRALLDLEFHCNGI-DSALSLFIKS 471 (707)
Q Consensus 396 ~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~---yt~~g~~~~vRiaA~~aL~~l~~~~~g~-~~al~~~l~~ 471 (707)
.-|--+.|.--|+.-|+.+-. ..+.|+ |.++..+.. -.-++....||+.|.-||-.+-...+.. -.+..++...
T Consensus 94 ~Eskdk~VRfrvlqila~l~d-~~~eid-d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~l 171 (892)
T KOG2025|consen 94 TESKDKKVRFRVLQILALLSD-ENAEID-DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDL 171 (892)
T ss_pred ccCcchhHHHHHHHHHHHHhc-cccccC-HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 347778888889988888742 235566 333332221 1223455689999999999984322211 2678889999
Q ss_pred HhcCccchhh
Q 005234 472 VEEEPSLRGQ 481 (707)
Q Consensus 472 l~~dp~~r~~ 481 (707)
++.||++.+|
T Consensus 172 iqnDpS~EVR 181 (892)
T KOG2025|consen 172 IQNDPSDEVR 181 (892)
T ss_pred HhcCCcHHHH
Confidence 9999999766
No 67
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=34.78 E-value=55 Score=38.46 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceE
Q 005234 7 GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVL 67 (707)
Q Consensus 7 G~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f 67 (707)
|+.++-.++..+...... .+..++.++++-+|++++ |.||..||++.|++.--|-|
T Consensus 377 ~~~SLDdvmram~~~~~~--~~~~~t~e~v~av~~~~t---g~dl~~f~~~~i~~~~~~~l 432 (558)
T COG3975 377 GQKSLDDVMRALWKEFGR--AERGYTPEDVQAVLENVT---GLDLATFFDEYIEGTEPPPL 432 (558)
T ss_pred CcccHHHHHHHHHHHhCc--CccCCCHHHHHHHHHhhc---cccHHHHHHHHhhcCCCCCh
Confidence 366666666666665532 467889999999999999 46999999999999998877
No 68
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=32.69 E-value=2.7e+02 Score=24.07 Aligned_cols=63 Identities=32% Similarity=0.336 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhccccccc-------ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHH
Q 005234 243 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLE 315 (707)
Q Consensus 243 ~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~-------~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqk 315 (707)
.+..|...+.+.. +.+|..|+.+|+.++.... ...+++.|++.+.+ .++.|++
T Consensus 8 ~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~------------------~~~~v~~ 67 (120)
T cd00020 8 GLPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS------------------EDEEVVK 67 (120)
T ss_pred ChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC------------------CCHHHHH
Confidence 3466777887774 8999999999999886411 12356777777653 1356888
Q ss_pred HHHHHhhccc
Q 005234 316 AIPHAVAMVR 325 (707)
Q Consensus 316 AIp~ALa~vR 325 (707)
+...+|+.+=
T Consensus 68 ~a~~~L~~l~ 77 (120)
T cd00020 68 AALWALRNLA 77 (120)
T ss_pred HHHHHHHHHc
Confidence 8889999884
No 69
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=32.47 E-value=2.9e+02 Score=23.92 Aligned_cols=62 Identities=24% Similarity=0.100 Sum_probs=44.5
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCCCh---------HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccc
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE 275 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s---------~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~ 275 (707)
.+.-++-++.+...+..|+.+|......+ ..+...|...+.|+ -+.||..|+.+|+.++...
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccCc
Confidence 34444556778888999998887654321 02356777888776 7899999999999997543
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.27 E-value=4.5e+02 Score=32.80 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCC-h-HHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhcc
Q 005234 381 SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-L-DQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHC 458 (707)
Q Consensus 381 ~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~-~-d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~ 458 (707)
.++-.|+-.++-| .-|-+..|-..||-++..++. .--++ + .++.+++. .. -.-||.+|+-|++++....
T Consensus 103 dvllLltNslknD--L~s~nq~vVglAL~alg~i~s--~EmardlapeVe~Ll~-~~----~~~irKKA~Lca~r~irK~ 173 (866)
T KOG1062|consen 103 DLLLLLTNSLKND--LNSSNQYVVGLALCALGNICS--PEMARDLAPEVERLLQ-HR----DPYIRKKAALCAVRFIRKV 173 (866)
T ss_pred HHHHHHHHHHHhh--ccCCCeeehHHHHHHhhccCC--HHHhHHhhHHHHHHHh-CC----CHHHHHHHHHHHHHHHHcC
Confidence 4666788888877 445555666666666655530 00000 1 22334443 22 2469999999999987655
Q ss_pred CChhHH-HHHHHHHH-hcCccchhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHHHHhcccccc--------ccchhh
Q 005234 459 NGIDSA-LSLFIKSV-EEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAF--------NNVFLR 528 (707)
Q Consensus 459 ~g~~~a-l~~~l~~l-~~dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~--------~d~~lR 528 (707)
..+-+. +.-|-..+ +.|+.+-.. -..-+.++|......-+..+=..+.|+.+|+.+.++.-. .|++|-
T Consensus 174 P~l~e~f~~~~~~lL~ek~hGVL~~--~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQ 251 (866)
T KOG1062|consen 174 PDLVEHFVIAFRKLLCEKHHGVLIA--GLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQ 251 (866)
T ss_pred chHHHHhhHHHHHHHhhcCCceeee--HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHH
Confidence 433222 11233333 445544221 223345566553110001111678888888887765433 388998
Q ss_pred hhHHHHHHHhhcC
Q 005234 529 HHLFGILQILAGR 541 (707)
Q Consensus 529 ~~~~~~~~~L~g~ 541 (707)
+-++.+|.+|+..
T Consensus 252 i~iLrlLriLGq~ 264 (866)
T KOG1062|consen 252 IRILRLLRILGQN 264 (866)
T ss_pred HHHHHHHHHhcCC
Confidence 8888888888654
No 71
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=32.09 E-value=2.7e+02 Score=29.83 Aligned_cols=100 Identities=18% Similarity=0.137 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhhhhhccCCh-hHHHHHHHHHHhcCccchhhhHHHHHhhhHHHhhCCCC------CCCCCCcHHHHHHH
Q 005234 441 WQVRVEASRALLDLEFHCNGI-DSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSD------SNHEVDTVTLVALL 513 (707)
Q Consensus 441 ~~vRiaA~~aL~~l~~~~~g~-~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~l 513 (707)
..||..|++||+.+....+.. ...+.+|+..++.+ +...+......+..++..-|... .....+...+...+
T Consensus 41 ~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l 119 (298)
T PF12719_consen 41 PAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKIL 119 (298)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHH
Confidence 499999999999988765533 34466788888665 33333222222233333322111 11345566777766
Q ss_pred HHhccccccccchhhhhHHHHHHH--hhcCCCc
Q 005234 514 NLLESRIAFNNVFLRHHLFGILQI--LAGRAPT 544 (707)
Q Consensus 514 ~~~~~~~~~~d~~lR~~~~~~~~~--L~g~~~~ 544 (707)
.....+. |..+|..+..-+-. |.|+...
T Consensus 120 ~~~l~~~---~~~~~~~a~EGl~KLlL~~~i~~ 149 (298)
T PF12719_consen 120 TKFLDSE---NPELQAIAVEGLCKLLLSGRISD 149 (298)
T ss_pred HHHHhcC---CHHHHHHHHHHHHHHHhcCCCCc
Confidence 6665542 66788775544433 4455444
No 72
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.31 E-value=1.5e+03 Score=31.37 Aligned_cols=152 Identities=20% Similarity=0.154 Sum_probs=81.0
Q ss_pred HHHHHhhcccccCCC---ChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccchHHHHHHH-HHHHHHHh
Q 005234 316 AIPHAVAMVRAADNK---SPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLL-KRIDRLLQ 391 (707)
Q Consensus 316 AIp~ALa~vRd~~g~---~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~~~l~~vl-~eI~R~l~ 391 (707)
|++.|+.-+-..+|. =|.+++.+-+.++-.-=-+.|+- -+..+.+|++.+.-.-++..|...+. .-++++-
T Consensus 851 al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~----~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdkla- 925 (2067)
T KOG1822|consen 851 ALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPK----LRCAAAEALARLAQVVGSAPFVASLAQNSFDKLA- 925 (2067)
T ss_pred HHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChH----HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH-
Confidence 444455444444442 35566665555553222222222 23346666666432222333433222 2233333
Q ss_pred cCcCCCCcccHhH----HHHHHHHHHHHHHhcCCCChHHHHH---hhhcccCCCCcHHHHHHHHHHhhhhhhccCCh---
Q 005234 392 FDRLMPSYNGILT----ISCIRTLTQIALKLSGFISLDQVVK---LIKPFRDFNTIWQVRVEASRALLDLEFHCNGI--- 461 (707)
Q Consensus 392 lD~~~PSY~~vVT----vacL~~L~~L~~~~~g~i~~d~~~~---ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~--- 461 (707)
|-+.+|+ +.++-++-+ ...|..+...+.. .+.....++++..|+--++.+|..+....+++
T Consensus 926 ------s~~d~i~R~ghslalg~lhk---yvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~ 996 (2067)
T KOG1822|consen 926 ------SARDPITRTGHSLALGCLHK---YVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRV 996 (2067)
T ss_pred ------hcCCcHHHHHHHHHHHHHHH---hccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehh
Confidence 3344444 334444434 2456666544333 55566778889899999999998876544444
Q ss_pred --hHHHHHHHHHHhcCccchhh
Q 005234 462 --DSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 462 --~~al~~~l~~l~~dp~~r~~ 481 (707)
...|.+.++.+-.+|...+.
T Consensus 997 ~ve~tlsl~~~lLls~p~~~~e 1018 (2067)
T KOG1822|consen 997 LVEPTLSLCLKLLLSVPTSHVE 1018 (2067)
T ss_pred hHHHHHHHHHHHcCCCCcchhh
Confidence 24477788888888886554
No 73
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=30.12 E-value=2.8e+02 Score=31.92 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=28.4
Q ss_pred ccCCCCcHHHHHHHHHHhhhhhhccCC-hhHHHHHHHHHH
Q 005234 434 FRDFNTIWQVRVEASRALLDLEFHCNG-IDSALSLFIKSV 472 (707)
Q Consensus 434 yt~~g~~~~vRiaA~~aL~~l~~~~~g-~~~al~~~l~~l 472 (707)
......|..+|.+|++-|..+...... .......|+..+
T Consensus 36 Li~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I 75 (464)
T PF11864_consen 36 LIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI 75 (464)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 345678899999999999999876655 344555566666
No 74
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=5.2e+02 Score=32.17 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=22.4
Q ss_pred HHHhhcccccCCCChHHHHHHHHHHHhhcCCCC
Q 005234 318 PHAVAMVRAADNKSPREAVEFVLQLLKYNDNNG 350 (707)
Q Consensus 318 p~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~ 350 (707)
.-||+.|...+| .++.++|++.|+.++|..
T Consensus 400 lyAlGLIhA~hG---~~~~~yL~~~Lk~~~~e~ 429 (929)
T KOG2062|consen 400 LYALGLIHANHG---RGITDYLLQQLKTAENEV 429 (929)
T ss_pred hhhhhccccCcC---ccHHHHHHHHHHhccchh
Confidence 357888887777 458888888888877543
No 75
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=29.39 E-value=1.1e+02 Score=21.30 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=20.9
Q ss_pred HHHHHHHHhhcccccCCCChHHHHHHHHHHHh
Q 005234 313 VLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 344 (707)
Q Consensus 313 VqkAIp~ALa~vRd~~g~~P~ev~~fLldlLk 344 (707)
||.+...||+.+.+ +++...|++.|+
T Consensus 1 VR~~Aa~aLg~igd------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------HHHHHHHHHHhc
Confidence 67888999999987 678888887775
No 76
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=28.56 E-value=9.5e+02 Score=27.64 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=38.9
Q ss_pred HHHHHHHHHHh-cCccchhhhHHH---HHhhhHHHhhCCCCCCCCCCcHH--HHHHHHHhccccccccchhhhhHHHHHH
Q 005234 463 SALSLFIKSVE-EEPSLRGQVKLG---IHAMRICQIKGGSDSNHEVDTVT--LVALLNLLESRIAFNNVFLRHHLFGILQ 536 (707)
Q Consensus 463 ~al~~~l~~l~-~dp~~r~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~--l~~~l~~~~~~~~~~d~~lR~~~~~~~~ 536 (707)
.++..+..+|. .++....-..+. +..++++....+...-..|.... ++.-+..-.. .+++++=+.++..+.
T Consensus 250 ~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~---~~~~~v~~eIl~~i~ 326 (464)
T PF11864_consen 250 SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALK---SNSPRVDYEILLLIN 326 (464)
T ss_pred HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHh---CCCCeehHHHHHHHH
Confidence 55666666662 333321112222 22344444443211122343333 4444443333 357788888888888
Q ss_pred Hhh-cCCCc
Q 005234 537 ILA-GRAPT 544 (707)
Q Consensus 537 ~L~-g~~~~ 544 (707)
.|. |.|.-
T Consensus 327 ~ll~~~~~~ 335 (464)
T PF11864_consen 327 RLLDGKYGR 335 (464)
T ss_pred HHHhHhhhh
Confidence 888 66654
No 77
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=26.45 E-value=2.8e+02 Score=27.40 Aligned_cols=16 Identities=44% Similarity=0.304 Sum_probs=8.4
Q ss_pred HHHHHHHHHhhhhhhc
Q 005234 442 QVRVEASRALLDLEFH 457 (707)
Q Consensus 442 ~vRiaA~~aL~~l~~~ 457 (707)
.||..|+.+|.|+...
T Consensus 3 ~vR~n~i~~l~DL~~r 18 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIR 18 (178)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3555555555555433
No 78
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=26.11 E-value=3.5e+02 Score=27.13 Aligned_cols=85 Identities=21% Similarity=0.181 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCCCCC
Q 005234 225 AQAQAIAALEALPHLSFNVVNTLNNFLSDSKA-FWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPN 303 (707)
Q Consensus 225 AQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ry-FygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpN 303 (707)
.-.||...|...+..+ ...+| .|.+.+| --.||.-|...|..++.++- ..=++.|+++.| |++...-|.+-
T Consensus 62 e~~e~~~lL~~W~~i~--~~~aL--eLL~~~f~~~~VR~yAV~~L~~~sd~eL-~~yL~QLVQaLK---yE~~~~~~~~~ 133 (166)
T cd00870 62 EVKQALELMPKWAKID--IEDAL--ELLSPYFTNPVVRKYAVSRLKLASDEEL-LLYLLQLVQALK---YENLDLSPLPR 133 (166)
T ss_pred HHHHHHHHHhcCCCCC--HHHHH--HHcCccCCCHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHH---hcccccccccc
Confidence 3345666777665443 33444 2334432 25899999999999887664 111344555554 44321112223
Q ss_pred CCCChhHHHHHHHH
Q 005234 304 DFRDFSEYFVLEAI 317 (707)
Q Consensus 304 dFsdf~~YfVqkAI 317 (707)
.-+...+|.+++|+
T Consensus 134 ~~s~La~fLl~Ral 147 (166)
T cd00870 134 LDSPLADFLIERAL 147 (166)
T ss_pred cccHHHHHHHHHHh
Confidence 45667888888877
No 79
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=25.61 E-value=9.1e+02 Score=29.42 Aligned_cols=206 Identities=22% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHhCCCChH-HHHHHHHHHhcCCCccHHHHHHHHHHHhc--cccccc-------ccchHHHHHHHHH
Q 005234 220 DGDVVAQAQAIAALEALPHLSF-NVVNTLNNFLSDSKAFWRVRIEAAYALAN--TASEET-------DWAGLLHLVKFYK 289 (707)
Q Consensus 220 DrDVvAQlEAI~aL~~~p~~s~-~~v~aL~rtL~D~ryFygVR~eAA~ALak--~a~~~~-------~~~Gl~~Lik~Fk 289 (707)
.+|--+++.|=..|.+..+..+ .....|...|.|.+.--.+|+.|+.+|.. .+++.. .|.|++|=.|-+-
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qv 95 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQV 95 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHH
Q ss_pred h------------ccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhH
Q 005234 290 S------------RRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVF 357 (707)
Q Consensus 290 ~------------~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~ 357 (707)
+ ++|- .--.++.|++.+--++|.-|.-...+.-+.=.. .-.-
T Consensus 96 K~~al~aL~s~epr~~~------------------~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~e--------qp~~ 149 (858)
T COG5215 96 KGMALRALKSPEPRFCT------------------MAAQLLAAIARMELPNSLWPGLMEEMVRNVGDE--------QPVS 149 (858)
T ss_pred HHHHHHHhcCCccHHHH------------------HHHHHHHHHHHhhCccccchHHHHHHHHhcccc--------CchH
Q ss_pred HHHHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCC
Q 005234 358 WLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDF 437 (707)
Q Consensus 358 YvA~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~ 437 (707)
-..+.+.++|...-...-....+ +||++++--|.-++..
T Consensus 150 ~k~~sl~~~gy~ces~~Pe~li~-----------------~sN~il~aiv~ga~k~------------------------ 188 (858)
T COG5215 150 GKCESLGICGYHCESEAPEDLIQ-----------------MSNVILFAIVMGALKN------------------------ 188 (858)
T ss_pred hHHHHHHHHHHHhhccCHHHHHH-----------------HhhHHHHHHHHhhccc------------------------
Q ss_pred CCcHHHHHHHHHHhhh-hhhccCCh--hHHHHHHHHHHhcC---ccchhhhHHHHHhhhHH
Q 005234 438 NTIWQVRVEASRALLD-LEFHCNGI--DSALSLFIKSVEEE---PSLRGQVKLGIHAMRIC 492 (707)
Q Consensus 438 g~~~~vRiaA~~aL~~-l~~~~~g~--~~al~~~l~~l~~d---p~~r~~~~~~~~~~~~~ 492 (707)
+....||++|+.||.+ +.+..+-. .....||+..++.- |+...++..+.+..++.
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim 249 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIM 249 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHH
No 80
>PHA01816 hypothetical protein
Probab=23.19 E-value=96 Score=29.74 Aligned_cols=33 Identities=24% Similarity=0.538 Sum_probs=24.6
Q ss_pred HHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCC
Q 005234 318 PHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYS 354 (707)
Q Consensus 318 p~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ys 354 (707)
+.|+|.+|... ..-...+|++-.-||||+|.--
T Consensus 68 ~navslvrg~r----hkkln~ileiynrnd~snnkna 100 (160)
T PHA01816 68 VNAVSLVRGSR----HKKLNYILEIYNRNDDSNNKNA 100 (160)
T ss_pred hhhhhhhhccc----hhhhHHHHHHHhcCCCcccchh
Confidence 67888888532 3456678899999999988743
No 81
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=22.38 E-value=3.3e+02 Score=27.88 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhhcccccCCCChHHHHHHHH
Q 005234 309 SEYFVLEAIPHAVAMVRAADNKSPREAVEFVL 340 (707)
Q Consensus 309 ~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLl 340 (707)
.+|||||||--+|..+= -..|..|..||.
T Consensus 162 ~e~fI~KAiGW~LRe~~---k~d~~~V~~fl~ 190 (208)
T cd07064 162 KEFFIRKAIGWALREYS---KTNPDWVRDFVA 190 (208)
T ss_pred hHHHHHHHHHHHHHHHh---ccCHHHHHHHHH
Confidence 68999999999987653 346889999993
No 82
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=20.68 E-value=4.2e+02 Score=24.13 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhcccc
Q 005234 243 VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 273 (707)
Q Consensus 243 ~v~aL~rtL~D~ryFygVR~eAA~ALak~a~ 273 (707)
.+..+..++.|+ =++||..|+++|..++.
T Consensus 28 Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k 56 (97)
T PF12755_consen 28 ILPPVLKCFDDQ--DSRVRYYACEALYNISK 56 (97)
T ss_pred HHHHHHHHcCCC--cHHHHHHHHHHHHHHHH
Confidence 345566888888 79999999999998874
No 83
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=20.54 E-value=1.6e+03 Score=27.40 Aligned_cols=188 Identities=18% Similarity=0.175 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHh-HHHHHHH
Q 005234 332 PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGIL-TISCIRT 410 (707)
Q Consensus 332 P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vV-TvacL~~ 410 (707)
..++..++- +..+++.|.+.+.||.+.+..+|+ |... ..+++.+.+...++-|.-..+ +. .++++..
T Consensus 69 ~~~~C~~~~---~~~~~s~~~~e~lfya~~~~~~L~-C~~~-----~~~~~~~~l~~~l~~~s~~~~---iy~av~sl~~ 136 (636)
T PF05817_consen 69 SKAACKFLK---KALDESSNDLESLFYAASASKALK-CKVS-----VSNEVKSLLKAALSEDSSVSQ---IYYAVSSLKL 136 (636)
T ss_pred hhhHHHHHH---HhhccccchHHHHHHHHHHHhhcC-Cccc-----CcHHHHHHHHHHhcCCccHHH---HHHHHHHHHH
Confidence 446677775 444555589999999999999999 6654 233455566666654432211 22 1333332
Q ss_pred HHHHHHHhcCCC---ChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccC------ChhHHHHH----HHHHHhcCcc
Q 005234 411 LTQIALKLSGFI---SLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN------GIDSALSL----FIKSVEEEPS 477 (707)
Q Consensus 411 L~~L~~~~~g~i---~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~------g~~~al~~----~l~~l~~dp~ 477 (707)
+ + -.+ ..+.+...+..-...+....-=--|+.++-.++.... ..++++-. --+++.+|-.
T Consensus 137 l---g----~~v~~~~~~~v~k~l~~~l~kdds~~s~g~al~~aa~L~~~a~l~~~~~~ieD~v~qaDEv~~~~LqFegg 209 (636)
T PF05817_consen 137 L---G----LKVDEADSDEVVKALQASLKKDDSLLSLGYALHAAAQLSKQADLADIVERIEDAVAQADEVDGKYLQFEGG 209 (636)
T ss_pred c---C----CCcccccHHHHHHHHHHHhcccccHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHhhhhhcccceeecCC
Confidence 2 1 112 2233333333211111111112234444444431110 01111110 0011222222
Q ss_pred chhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHHHHhccccccccchhhhhHHHHHHHhhcC
Q 005234 478 LRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGR 541 (707)
Q Consensus 478 ~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~d~~lR~~~~~~~~~L~g~ 541 (707)
...-.-+..-+.+++...+ . +..|+...++.+...+.+.....+.+=-++++..+..|...
T Consensus 210 Ls~TA~vv~g~~~la~~~~-k--~~~i~~dQivklanylLsrr~v~s~k~a~~l~~al~~L~~N 270 (636)
T PF05817_consen 210 LSTTALVVRGIYKLADAVG-K--KPPIKEDQIVKLANYLLSRRSVQSPKDAFNLLEALKSLSSN 270 (636)
T ss_pred chhhHHHHHHHHHHHHhhC-C--CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhC
Confidence 2111223333445555443 3 45699999999999999988888888888888888888764
Done!