Query 005234
Match_columns 707
No_of_seqs 186 out of 293
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 19:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b34_A Aminopeptidase N; prote 99.8 2.3E-17 7.8E-22 195.8 34.1 174 1-236 411-595 (891)
2 3ebh_A PFA-M1, M1 family amino 99.6 1.6E-15 5.4E-20 179.8 17.9 177 1-236 394-579 (889)
3 2gtq_A Aminopeptidase N; alani 99.6 2.1E-15 7.1E-20 178.8 18.8 171 1-235 386-568 (867)
4 1z5h_A Tricorn protease intera 99.0 2.3E-09 7.7E-14 126.0 17.7 193 1-273 360-557 (780)
5 2xdt_A Endoplasmic reticulum a 99.0 1.6E-08 5.5E-13 120.5 22.3 269 1-345 402-712 (897)
6 4fke_A Aminopeptidase N; zinc 98.7 6.5E-07 2.2E-11 106.8 21.8 67 1-71 420-491 (909)
7 3se6_A Endoplasmic reticulum a 98.6 5.9E-07 2E-11 108.0 19.1 271 1-344 464-779 (967)
8 3ltm_A Alpha-REP4; protein eng 98.5 1.4E-06 4.8E-11 84.0 13.8 185 209-457 20-204 (211)
9 3ltj_A Alpharep-4; protein eng 98.3 9E-06 3.1E-10 77.7 14.1 180 213-455 18-197 (201)
10 1oyz_A Hypothetical protein YI 98.2 5.4E-05 1.9E-09 76.0 19.3 214 209-479 24-238 (280)
11 3u9w_A Leukotriene A-4 hydrola 98.2 1.3E-07 4.5E-12 108.0 -1.6 75 1-82 390-469 (608)
12 3cia_A Cold-active aminopeptid 97.9 2.1E-06 7.3E-11 98.0 1.8 67 1-71 395-463 (605)
13 2xq0_A LTA-4 hydrolase, leukot 97.9 2.3E-06 7.8E-11 98.4 1.2 66 1-71 399-466 (632)
14 3ltj_A Alpharep-4; protein eng 97.8 0.00017 6E-09 68.7 12.7 150 211-415 48-197 (201)
15 1oyz_A Hypothetical protein YI 97.8 0.00038 1.3E-08 69.7 15.0 205 212-478 57-267 (280)
16 3ltm_A Alpha-REP4; protein eng 97.8 0.00022 7.4E-09 68.5 12.6 148 214-415 55-202 (211)
17 1te4_A Conserved protein MTH18 97.6 4.3E-05 1.5E-09 69.1 4.3 123 206-369 9-131 (131)
18 1b3u_A Protein (protein phosph 97.3 0.0022 7.6E-08 69.7 13.9 285 214-539 286-586 (588)
19 1b3u_A Protein (protein phosph 97.2 0.0061 2.1E-07 66.3 15.7 288 213-540 168-470 (588)
20 2vgl_B AP-2 complex subunit be 96.8 0.058 2E-06 60.7 19.9 164 219-414 96-266 (591)
21 1te4_A Conserved protein MTH18 96.6 0.0053 1.8E-07 55.2 7.8 87 212-324 45-131 (131)
22 4fgm_A Aminopeptidase N family 96.3 0.0013 4.4E-08 75.4 2.8 61 2-67 391-452 (597)
23 2vgl_B AP-2 complex subunit be 96.3 0.19 6.3E-06 56.6 20.1 281 214-546 126-425 (591)
24 1w63_A Adapter-related protein 96.2 0.18 6.3E-06 57.2 19.3 284 219-543 117-417 (618)
25 4db8_A Armadillo-repeat protei 96.1 0.075 2.6E-06 51.6 13.4 175 207-415 10-208 (252)
26 4hxt_A De novo protein OR329; 96.0 0.083 2.8E-06 50.7 13.3 167 214-415 8-198 (252)
27 1w63_A Adapter-related protein 96.0 0.18 6.1E-06 57.3 18.1 220 219-472 323-556 (618)
28 2jdq_A Importin alpha-1 subuni 95.9 0.11 3.6E-06 54.6 14.4 287 212-540 68-390 (450)
29 4b8j_A Importin subunit alpha- 95.7 0.089 3E-06 57.4 13.4 230 209-481 75-346 (528)
30 1wa5_B Importin alpha subunit; 95.6 0.068 2.3E-06 58.5 11.9 287 212-541 134-458 (530)
31 4b8j_A Importin subunit alpha- 95.5 0.12 4E-06 56.4 13.6 211 210-456 119-358 (528)
32 4ady_A RPN2, 26S proteasome re 95.4 2.8 9.6E-05 50.6 25.8 209 223-481 451-664 (963)
33 4ady_A RPN2, 26S proteasome re 95.2 1.6 5.3E-05 52.7 22.7 258 212-516 475-748 (963)
34 4db6_A Armadillo repeat protei 94.6 0.34 1.2E-05 45.7 12.3 136 208-371 11-167 (210)
35 2jdq_A Importin alpha-1 subuni 94.6 0.73 2.5E-05 48.2 16.0 229 212-481 24-293 (450)
36 3ul1_B Importin subunit alpha- 94.6 1.3 4.5E-05 48.6 18.7 236 212-481 104-375 (510)
37 3tpo_A Importin subunit alpha- 94.4 0.72 2.5E-05 50.8 16.2 233 212-481 123-394 (529)
38 1wa5_B Importin alpha subunit; 94.4 1.6 5.5E-05 47.6 18.8 230 209-480 88-357 (530)
39 2vgl_A Adaptor protein complex 94.2 1.3 4.6E-05 50.4 18.2 288 219-544 121-437 (621)
40 3tpo_A Importin subunit alpha- 93.9 1.1 3.8E-05 49.3 16.4 212 209-456 77-322 (529)
41 2bpt_A Importin beta-1 subunit 93.6 5.8 0.0002 45.1 22.0 241 213-481 373-656 (861)
42 1u6g_C TIP120 protein, CAND1; 93.4 0.84 2.9E-05 55.3 15.3 229 213-473 11-265 (1230)
43 3ul1_B Importin subunit alpha- 93.3 2.1 7.3E-05 47.0 17.2 208 209-455 58-302 (510)
44 1ibr_B P95, importin beta-1 su 93.2 6.7 0.00023 40.8 20.1 251 216-493 135-437 (462)
45 1qgr_A Protein (importin beta 92.5 9.3 0.00032 43.5 21.6 60 213-274 370-438 (876)
46 4fdd_A Transportin-1; heat rep 92.5 8.9 0.0003 44.4 21.7 292 214-539 133-470 (852)
47 2vgl_A Adaptor protein complex 91.8 2.7 9.1E-05 47.9 16.0 217 219-472 339-566 (621)
48 4fdd_A Transportin-1; heat rep 91.6 6.5 0.00022 45.5 19.3 236 218-481 183-459 (852)
49 4hxt_A De novo protein OR329; 90.9 5.5 0.00019 37.8 14.9 165 214-415 49-240 (252)
50 2qk2_A LP04448P; mini spindles 90.5 11 0.00037 36.7 16.9 170 213-415 20-204 (242)
51 4db8_A Armadillo-repeat protei 90.3 1.6 5.5E-05 42.1 10.7 130 213-370 58-208 (252)
52 2bpt_A Importin beta-1 subunit 89.5 19 0.00066 40.8 20.3 241 216-481 231-517 (861)
53 1jdh_A Beta-catenin; beta-cate 89.4 6.3 0.00021 42.1 15.4 203 216-456 108-339 (529)
54 4db6_A Armadillo repeat protei 89.0 6.5 0.00022 36.7 13.5 139 243-415 13-166 (210)
55 1qgr_A Protein (importin beta 88.7 37 0.0013 38.6 24.1 294 214-539 133-478 (876)
56 3l9t_A Putative uncharacterize 88.3 4.9 0.00017 41.1 12.7 127 213-370 75-206 (240)
57 1lsh_A Lipovitellin (LV-1N, LV 88.0 2.6 8.8E-05 51.2 12.4 216 226-481 342-564 (1056)
58 2z6g_A B-catenin; FULL-length, 87.7 12 0.00041 43.5 17.4 215 213-457 403-664 (780)
59 3now_A UNC-45 protein, SD10334 87.0 4.1 0.00014 48.3 13.0 202 243-482 496-726 (810)
60 1jdh_A Beta-catenin; beta-cate 86.5 20 0.00069 38.1 17.1 229 212-474 63-319 (529)
61 3opb_A SWI5-dependent HO expre 86.3 5.6 0.00019 47.0 13.5 189 243-455 458-682 (778)
62 2db0_A 253AA long hypothetical 86.3 23 0.00078 35.6 15.6 212 242-496 32-249 (253)
63 2z6h_A Catenin beta-1, beta-ca 85.6 20 0.00068 40.2 17.2 217 211-457 265-528 (644)
64 2qk1_A Protein STU2; STU2P, XM 85.0 13 0.00046 37.0 13.9 58 213-273 21-90 (249)
65 1ibr_B P95, importin beta-1 su 83.3 45 0.0015 34.4 19.8 239 214-481 7-276 (462)
66 2z6g_A B-catenin; FULL-length, 81.8 30 0.001 40.2 17.1 229 211-474 195-452 (780)
67 2z6h_A Catenin beta-1, beta-ca 79.9 40 0.0014 37.7 16.8 212 211-456 59-292 (644)
68 2qk2_A LP04448P; mini spindles 71.3 75 0.0026 30.5 15.8 152 310-481 28-193 (242)
69 1u6g_C TIP120 protein, CAND1; 67.2 2.2E+02 0.0074 34.3 24.0 257 246-542 10-286 (1230)
70 1xqr_A HSPBP1 protein; armadil 64.8 36 0.0012 35.1 10.8 160 222-415 53-237 (296)
71 2of3_A ZYG-9; multifunctional 56.8 83 0.0028 32.3 11.7 59 398-459 178-239 (266)
72 3tjz_B Coatomer subunit gamma; 55.1 1.8E+02 0.0061 31.0 14.4 199 217-456 76-279 (355)
73 3tjz_B Coatomer subunit gamma; 54.8 53 0.0018 35.1 10.2 205 219-460 114-320 (355)
74 3oc3_A Helicase MOT1, MOT1; re 54.1 2.2E+02 0.0074 33.2 15.1 218 219-479 184-424 (800)
75 1xqr_A HSPBP1 protein; armadil 52.5 43 0.0015 34.5 8.9 132 213-371 86-238 (296)
76 3b2a_A TON_1937, putative unch 50.2 80 0.0027 32.6 10.0 165 217-414 41-216 (265)
77 3grl_A General vesicular trans 45.8 13 0.00044 43.1 3.9 190 217-455 130-341 (651)
78 2qk1_A Protein STU2; STU2P, XM 43.9 1.2E+02 0.0042 29.9 10.4 135 211-369 63-218 (249)
79 1xm9_A Plakophilin 1; armadill 42.2 3.2E+02 0.011 29.1 14.1 139 212-371 6-172 (457)
80 3now_A UNC-45 protein, SD10334 39.6 1.2E+02 0.0042 35.9 10.9 131 213-371 585-737 (810)
81 1lrv_A LRV, leucine-rich repea 39.0 5.9 0.0002 40.2 -0.3 43 216-269 177-219 (244)
82 1lsh_A Lipovitellin (LV-1N, LV 31.6 2.4E+02 0.0082 34.2 12.0 69 219-290 450-523 (1056)
83 3l6x_A Catenin delta-1; cateni 25.1 7.8E+02 0.027 27.8 20.3 113 210-343 50-183 (584)
84 4ffb_C Protein STU2; tubulin f 24.2 5.1E+02 0.017 25.3 11.4 177 258-459 23-215 (278)
85 3rjo_A Endoplasmic reticulum a 22.5 7E+02 0.024 26.3 15.5 143 190-344 68-228 (419)
86 3opb_A SWI5-dependent HO expre 22.3 9.5E+02 0.033 28.3 14.3 229 214-477 261-512 (778)
87 3grl_A General vesicular trans 20.5 7.5E+02 0.026 28.6 12.7 48 242-290 21-71 (651)
No 1
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=99.80 E-value=2.3e-17 Score=195.84 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=142.3
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEEEeCCccEE
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIV 80 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkKr~~V 80 (707)
|||..+|++.|+++|+.|+.++. .++++|+||..++|+++ |.||++ |++|++++|+|.++|+..|+.+++.+
T Consensus 411 ML~~~lG~e~F~~gLr~Yl~~~~----~~~att~Df~~ale~~s---g~dL~~-f~~W~~q~G~P~l~V~~~~~~~~~~~ 482 (891)
T 3b34_A 411 MIHTLLGEENFQKGMQLYFERHD----GSAATCDDFVQAMEDAS---NVDLSH-FRRWYSQSGTPIVTVKDDYNPETEQY 482 (891)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TEEECHHHHHHHHHHHH---CCCCTT-TTHHHHCCSCCEEEEEEEEETTTTEE
T ss_pred HHHHHHCHHHHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHh---CCCHHH-HHHHHcCCCCceEEEEEEeecCCCEE
Confidence 89999999999999999999984 55899999999999999 568998 58999999999999999999888899
Q ss_pred EEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEcCceEE----------EEecccCCCcceEEEEe-cc
Q 005234 81 ELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYD----------HPILPMAGDAWQLLEIQ-CH 149 (707)
Q Consensus 81 EL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~DGtye----------H~V~~i~~d~~~k~eIp-~n 149 (707)
+++|+|.+.... .......|..|++|.+...||... +.++ +++..++|+|+ ++
T Consensus 483 ~ltl~Q~~~~~~--------------~~~~~~~~~iPi~v~l~~~~G~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~v~ 546 (891)
T 3b34_A 483 TLTISQRTPATP--------------DQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNSVLN--VTQAEQTFVFDNVY 546 (891)
T ss_dssp EEEEEEECCCBT--------------TBSCCCCCCEEEEEEEECTTSCBCCCEETTEECCSEEE--ECSSEEEEEECCCC
T ss_pred EEEEEEecCCCC--------------CCCCCceEEEEEEEEEEcCCCCcccccccccccceEEE--ecCCcEEEEEccCC
Confidence 999999763210 001123588999999998888631 2221 34455555555 22
Q ss_pred chhhHHhhcCCCCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHHHHHHHHhhCCChHHHHHH
Q 005234 150 SKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQA 229 (707)
Q Consensus 150 sK~k~rR~~K~Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~Mw~sQLq~DrDVvAQlEA 229 (707)
.+ | ||++|+++....+|+.++++++|++||++|+|+.+|.||
T Consensus 547 ~~------------------------------------P--~~~l~~~~s~~~~v~~~~~~~~l~~~l~~d~d~~~R~~a 588 (891)
T 3b34_A 547 FQ------------------------------------P--VPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDA 588 (891)
T ss_dssp SC------------------------------------C--EEEESTTCCSSCEEECCCCHHHHHHHHHHCSSHHHHHHH
T ss_pred CC------------------------------------C--cEEEcCCCcceEEEeCCCCHHHHHHHHhhCCChhHHHHH
Confidence 22 1 899999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q 005234 230 IAALEAL 236 (707)
Q Consensus 230 I~aL~~~ 236 (707)
++.|.+.
T Consensus 589 ~~~L~~~ 595 (891)
T 3b34_A 589 AQSLLAT 595 (891)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999764
No 2
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=99.64 E-value=1.6e-15 Score=179.84 Aligned_cols=177 Identities=12% Similarity=0.124 Sum_probs=146.1
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcC----CCccChhhHHhhhccCCCcceEEEEEEEeCC
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN----LERPFLKEFFPRWVGTCGCPVLRMGFSYNKR 76 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg----~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkK 76 (707)
|||..+|++.|+++|+.|+.++. .++++|+||..++++++. ..|.||.+ |++|++++|+|.++|+..|+.+
T Consensus 394 ML~~~lGde~F~~gLr~Yl~~~~----~~natt~Df~~ale~as~~~~~~~g~dL~~-f~~Wl~q~G~P~l~V~~~~d~~ 468 (889)
T 3ebh_A 394 MYLTILGEEYYKKGFDIYIKKND----GNTATCEDFNYAMEQAYKMKKADNSANLNQ-YLLWFSQSGTPHVSFKYNYDAE 468 (889)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TSEECHHHHHHHHHHHHHHHHTCTTCCCTG-GGHHHHCCSCCEEEEEEEEETT
T ss_pred HHHHHhCHHHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHhhhccCCCCCCHHH-HHHHhcCCCCceEEEEEeecCC
Confidence 89999999999999999999994 559999999999999980 00358986 6999999999999999999998
Q ss_pred ccEEEEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEc-Cce-E--EEEecccCCCcceEEEEe-ccch
Q 005234 77 KNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHEL-DGM-Y--DHPILPMAGDAWQLLEIQ-CHSK 151 (707)
Q Consensus 77 r~~VEL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~-DGt-y--eH~V~~i~~d~~~k~eIp-~nsK 151 (707)
++.++++|+|.+.... .......|.-|++|.+... +|. . .+.+ .+++..++|.|+ +..|
T Consensus 469 ~~~~~ltl~Q~~~~~~--------------~~~~~~~~~IPl~v~l~~~~~G~~~~~~~~l--~l~~~~q~f~~~~~~~~ 532 (889)
T 3ebh_A 469 KKQYSIHVNQYTKPDE--------------NQKEKKPLFIPISVGLINPENGKEMISQTTL--ELTKESDTFVFNNIAVK 532 (889)
T ss_dssp TTEEEEEEEEECCCCS--------------SCSSCCCCCEEEEEEEECTTTCCBCSCCEEE--EECSSEEEEEESCCCSC
T ss_pred CCEEEEEEEEecCCCC--------------CCCCCceEEEEEEEEEEeCCCCccccceeEE--EecCCcEEEEEcCCCCC
Confidence 8999999999864211 0112235889999999987 786 2 4544 257788889888 4444
Q ss_pred hhHHhhcCCCCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHHHHHHHHhhCCChHHHHHHHH
Q 005234 152 LAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIA 231 (707)
Q Consensus 152 ~k~rR~~K~Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~Mw~sQLq~DrDVvAQlEAI~ 231 (707)
| |+.++++|.-..+++.++++.++..||++|.|..+|.||++
T Consensus 533 p--------------------------------------~~sl~r~fsa~v~l~~~~~~~~l~~l~~~d~d~~~r~~a~~ 574 (889)
T 3ebh_A 533 P--------------------------------------IPSLFRGFSAPVYIEDQLTDEERILLLKYDSDAFVRYNSCT 574 (889)
T ss_dssp C--------------------------------------EEEESTTCCSSSEEECCCCHHHHHHHHHHCSCHHHHHHHHH
T ss_pred C--------------------------------------eEEEcCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHH
Confidence 3 66899999999999999999999999999999999999999
Q ss_pred HHHhC
Q 005234 232 ALEAL 236 (707)
Q Consensus 232 aL~~~ 236 (707)
.|...
T Consensus 575 ~l~~~ 579 (889)
T 3ebh_A 575 NIYMK 579 (889)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 3
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=99.64 E-value=2.1e-15 Score=178.84 Aligned_cols=171 Identities=17% Similarity=0.207 Sum_probs=136.1
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEEEeCCccEE
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIV 80 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkKr~~V 80 (707)
|||..+|++.|+++|+.|+.++. .++++|+||..++++++ |.||.+| ++|++++|+|.++|+..|+. +.+
T Consensus 386 mL~~~lG~e~F~~glr~Yl~~~~----~~~~t~~Df~~~l~~~s---g~dl~~f-~~W~~q~G~P~l~v~~~~~~--~~~ 455 (867)
T 2gtq_A 386 MYHTLLGEEGFQKGMKLYFQRHD----GQAVTCDDFRAAMADAN---GINLDQF-ALWYSQAGTPVLEAEGRLKN--NIF 455 (867)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TCEECHHHHHHHHHHHH---TCCCGGG-GHHHHCCSCCEEEEEEEEET--TEE
T ss_pred HHHHHHCHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHh---CCCHHHH-HHHhcCCCCceEEEEEEecC--CEE
Confidence 89999999999999999999984 55899999999999999 5689995 89999999999999999944 467
Q ss_pred EEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEcCceE-----------EEEecccCCCcceEEEEe-c
Q 005234 81 ELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMY-----------DHPILPMAGDAWQLLEIQ-C 148 (707)
Q Consensus 81 EL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~DGty-----------eH~V~~i~~d~~~k~eIp-~ 148 (707)
+++|+|.+.... . ......|..|++|.+...+|.. ...+ .+++..++|+|+ +
T Consensus 456 ~l~l~Q~~~~~~-----------~---~~~~~~~~iPi~~~~~~~~g~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 519 (867)
T 2gtq_A 456 ELTVKQTVPPTP-----------D---MTDKQPMMIPVKVGLLNRNGEAVAFDYQGKRATEAVL--LLTEAEQTFLLEGV 519 (867)
T ss_dssp EEEEEEECCCBT-----------T---BSCCCCCCEEEEEEEECTTCCBCCEECSSCEESCEEE--EECSSEEEEEEBCC
T ss_pred EEEEEEecCCCC-----------C---CCCCceEEEEEEEEEEcCCCcccccccccccccceEE--EEcCCceEEEEeCC
Confidence 888888763200 0 0112358899999998877752 2222 134555666665 2
Q ss_pred cchhhHHhhcCCCCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHHHHHHHHhhCCChHHHHH
Q 005234 149 HSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQ 228 (707)
Q Consensus 149 nsK~k~rR~~K~Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~Mw~sQLq~DrDVvAQlE 228 (707)
..|| |+.++++|....+++.++++.+|..|+.+|.|..+|.+
T Consensus 520 ~~~p--------------------------------------~~~l~r~fs~~~~l~~~~~~~~l~~l~~~~~d~~~R~~ 561 (867)
T 2gtq_A 520 TEAV--------------------------------------VPSLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWE 561 (867)
T ss_dssp CSCC--------------------------------------EEEESTTCCSSCEEECCCCHHHHHHHHHHCSCHHHHHH
T ss_pred CCCC--------------------------------------ceEecCCCCccEEEECCCCHHHHHHHHhhCCChhHHHH
Confidence 2221 89999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 005234 229 AIAALEA 235 (707)
Q Consensus 229 AI~aL~~ 235 (707)
|++.|.+
T Consensus 562 a~~~L~~ 568 (867)
T 2gtq_A 562 AAQTLYR 568 (867)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9766653
No 4
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=99.05 E-value=2.3e-09 Score=126.00 Aligned_cols=193 Identities=12% Similarity=0.164 Sum_probs=133.6
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEEEeCCccEE
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIV 80 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkKr~~V 80 (707)
||+..+|++.|+++|+.|+.++. .++++|+||..++++++ |.||++||++|++++|+|.++|+. + .+.
T Consensus 360 mL~~~lG~e~F~~~l~~yl~~~~----~~~~t~~Dl~~~l~~~s---g~dl~~~~~~W~~~~G~P~l~v~~--~--~~~- 427 (780)
T 1z5h_A 360 MIEDYAGYEEFRKGISKYLNDHK----FGNAEGSDLWTAIEDVS---GKPVKRVMEYWIKNPGYPVIKLKR--N--GRK- 427 (780)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHT----TEEECHHHHHHHHHHHH---CSCHHHHHHHHHHSCSCEEEEEEE--S--SSE-
T ss_pred HHHHHhCHHHHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHh---CCCHHHHHHHHHhCCCCceEEEEe--c--CcE-
Confidence 89999999999999999999984 45899999999999999 569999999999999999999986 3 233
Q ss_pred EEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEcCceEEEEecccCCCcceEEEEeccchhhHHhhcCC
Q 005234 81 ELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKP 160 (707)
Q Consensus 81 EL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~DGtyeH~V~~i~~d~~~k~eIp~nsK~k~rR~~K~ 160 (707)
++|+|.+-... . +....|..|+++ . .+|. .+++ + .+. .++|+
T Consensus 428 -~~l~Q~~f~~~----------~-----~~~~~w~iPi~~--~-~~~~-~~~~--l-~~~--~~~~~------------- 469 (780)
T 1z5h_A 428 -ITMYQTRFLLN----------G-----EEEGRWPVPVNI--K-KKDG-VERI--L-LED--EASIE------------- 469 (780)
T ss_dssp -EEEEEEECCSS----------C-----CEECCCCEEEEE--E-ETTE-EEEE--E-ECS--SEEEE-------------
T ss_pred -EEEEEEEecCC----------C-----CCCceEEEEEEE--c-CCCc-eeee--c-cCc--eEEcc-------------
Confidence 56777652100 0 012358888888 2 3443 2222 1 111 12221
Q ss_pred CCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHHHHHHHHhh--CCChHHH---HHHHHHHHh
Q 005234 161 KKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEK--DGDVVAQ---AQAIAALEA 235 (707)
Q Consensus 161 Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~Mw~sQLq~--DrDVvAQ---lEAI~aL~~ 235 (707)
.. .||.++++..=..+|+.+ +..|..-.++ .=++..| +..+-+|..
T Consensus 470 --------------------------~~-~~i~~N~~~~gyyrv~Yd--~~~~~~l~~~l~~i~~~~Ra~li~D~~~l~~ 520 (780)
T 1z5h_A 470 --------------------------AD-GLIKINADSAGFYRVLYD--DATFSDVMGHYRDLSPLDRIGLVDDLFAFLL 520 (780)
T ss_dssp --------------------------CT-TEEEESGGGCSSSEEECC--HHHHHHHHHTGGGCCHHHHHHHHHHHHHHHH
T ss_pred --------------------------CC-ceEEEeCCCCEEEEEECC--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 11 599999999888877665 5666554332 3478777 455566666
Q ss_pred CCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccc
Q 005234 236 LPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 273 (707)
Q Consensus 236 ~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~ 273 (707)
.+..+....-.|...|.++. .|.|...|...|..+..
T Consensus 521 ~g~~~~~~~l~l~~~l~~E~-~~~~w~~~~~~l~~~~~ 557 (780)
T 1z5h_A 521 SGHIDPETYRQRIRNFFDDE-DHNVITAIVGQMEYLRM 557 (780)
T ss_dssp HTSSCHHHHHHHHGGGTTCC-CHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHh
Confidence 55544344444567787776 88888888888766543
No 5
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=99.00 E-value=1.6e-08 Score=120.49 Aligned_cols=269 Identities=11% Similarity=0.142 Sum_probs=164.5
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHh-------------------cC-----CCccChhhHHh
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKV-------------------GN-----LERPFLKEFFP 56 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkV-------------------sg-----~~g~dL~~FFd 56 (707)
|||..+|++.|+++|++|+.++. .++++|+||..+++++ ++ ..|.||++||+
T Consensus 402 mL~~~lG~e~F~~gl~~Yl~~~~----~~~a~~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~dl~~~~~ 477 (897)
T 2xdt_A 402 MLREYLSADAFKSGIVQYLQKHS----YKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMN 477 (897)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHT----TEEECHHHHHHHHHTC----------------------------CCCHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCHHHHHH
Confidence 89999999999999999999984 5589999999999996 30 01579999999
Q ss_pred hhccCCCcceEEEEEEEeCCccEEEEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEcCceEEEEeccc
Q 005234 57 RWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPM 136 (707)
Q Consensus 57 QWVygsG~P~f~Vs~~FNkKr~~VEL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~DGtyeH~V~~i 136 (707)
+|++++|+|.++|+.. .+. ++|+|.+-.... ..+ + .....|.-|+++.. .++...+.++
T Consensus 478 ~W~~q~G~P~l~v~~~----~~~--~~l~Q~~f~~~~--------~~~-~--~~~~~w~iPi~~~~--~~~~~~~~~~-- 536 (897)
T 2xdt_A 478 TWTLQKGFPLITITVR----GRN--VHMKQEHYMKGS--------DGA-P--DTGYLWHVPLTFIT--SKSDMVHRFL-- 536 (897)
T ss_dssp HHHSSCSEEEEEEEEE----TTE--EEEEEEEECCC----------------CCCCCCCEEEEEEE--SSCSSCEEEE--
T ss_pred HhhcCCCceEEEEEEc----CCE--EEEEEEEeecCC--------CCC-C--CCCceEEEEEEEEe--CCCCccceEE--
Confidence 9999999999999874 233 467776521000 000 0 11235777888742 2222122222
Q ss_pred CCCcceEEEEeccchhhHHhhcCCCCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHH-HHHH
Q 005234 137 AGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQ-MWIN 215 (707)
Q Consensus 137 ~~d~~~k~eIp~nsK~k~rR~~K~Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~-Mw~s 215 (707)
++.....++++ .+..||.++++..=..+|+.+...+ ....
T Consensus 537 l~~~~~~~~~~---------------------------------------~~~~~i~~N~~~~gyyrV~Yd~~~w~~l~~ 577 (897)
T 2xdt_A 537 LKTKTDVLILP---------------------------------------EEVEWIKFNVGMNGYYIVHYEDDGWDSLTG 577 (897)
T ss_dssp ECSSEEEEECS---------------------------------------SCCSCEEESGGGCSSCEEEECTTHHHHHHH
T ss_pred ecCCceEEEcc---------------------------------------CCCceEEECCCceEEEEEEcCHHHHHHHHH
Confidence 12222222210 1235999999999999999886644 4667
Q ss_pred HHhhCC---ChHHHH---HHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhccccc---cccc---chHH-
Q 005234 216 QLEKDG---DVVAQA---QAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASE---ETDW---AGLL- 282 (707)
Q Consensus 216 QLq~Dr---DVvAQl---EAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~---~~~~---~Gl~- 282 (707)
||..+. ++..|. ..+-+|...+..+....--|.+.|.++. =|-|-..|...|..+..- ...+ ..+.
T Consensus 578 ~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~~~l~l~~~l~~E~-~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 656 (897)
T 2xdt_A 578 LLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHET-EIMPVFQGLNELIPMYKLMEKRDMNEVETQFKA 656 (897)
T ss_dssp HHHHCGGGSCHHHHHHHHHHHHHHHTTTSSCHHHHHHHHGGGGGCC-CHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHhCcccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHH
Confidence 787655 666664 4445666665544333334557788776 677777777777665431 1112 1221
Q ss_pred HHH----HHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhh
Q 005234 283 HLV----KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKY 345 (707)
Q Consensus 283 ~Li----k~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLky 345 (707)
++. ..|.+.-+.+ + .+..+-.+|..|....+.+.+.+ |-.++.+.+-+.+..
T Consensus 657 ~~~~l~~~~~~~lg~~~-------~--~~~~~~~lr~~~~~~ac~~g~~~--c~~~a~~~f~~~~~~ 712 (897)
T 2xdt_A 657 FLIRLLRDLIDKQTWTD-------E--GSVSERMLRSQLLLLACVHNYQP--CVQRAEGYFRKWKES 712 (897)
T ss_dssp HHHHHHHHHHHTCCSSC-------C--SCHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCC-------C--CCHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHhcC
Confidence 122 2333332222 1 12344446777777777765543 777887777666643
No 6
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=98.69 E-value=6.5e-07 Score=106.84 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=59.8
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCc-----cChhhHHhhhccCCCcceEEEEE
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLER-----PFLKEFFPRWVGTCGCPVLRMGF 71 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g-----~dL~~FFdQWVygsG~P~f~Vs~ 71 (707)
|||+.+|+|.|+++|+.|+.++. .++++|+||..++++++|.++ .++++||++|++.+|+|.++|+.
T Consensus 420 mL~~~lG~e~F~~gl~~Yl~~~~----~~na~~~Dl~~~l~~~s~~~~~~~~~~~v~~~~~~W~~q~G~Pvv~V~~ 491 (909)
T 4fke_A 420 MLSNFLTEDLFKEGLASYLHAFA----YQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDT 491 (909)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHT----TEEECHHHHHHHHHHHHHTCSSCCCSSCHHHHHHHHHSSCSCEEEEEET
T ss_pred HHHHHhHHHHHHHHHHHHHHhhc----ccCCCHHHHHHHHHHHhCcccccccchhHHhHhhCccccCCCcEEEEEe
Confidence 89999999999999999999994 569999999999999986432 36899999999999999999953
No 7
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=98.63 E-value=5.9e-07 Score=107.99 Aligned_cols=271 Identities=13% Similarity=0.156 Sum_probs=162.0
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcC------------------------CCccChhhHHh
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN------------------------LERPFLKEFFP 56 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg------------------------~~g~dL~~FFd 56 (707)
|||..+|++.|+++|+.|+.++. .++++|+||..+++++++ .+|.|+++||+
T Consensus 464 mL~~~lG~e~F~~gLr~Yl~~~~----~~nat~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~ 539 (967)
T 3se6_A 464 MLKDFLGEEKFQKGIIQYLKKFS----YRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMT 539 (967)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHT----TEEECHHHHHHHHHCC-------------------------CCCCCCHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHhhhccccccccccccccccccccccccCCcCHHHHHH
Confidence 89999999999999999999984 558999999999999731 13789999999
Q ss_pred hhccCCCcceEEEEEEEeCCccEEEEEEEeccCCCCCCCCCcccCCCCCC---CCCCCccceeEEEEEEEEcCceEEEEe
Q 005234 57 RWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSE---NRDGDIGWPGMMSIRVHELDGMYDHPI 133 (707)
Q Consensus 57 QWVygsG~P~f~Vs~~FNkKr~~VEL~IkQ~q~~~~~~~~~~~~~~~~~~---~~~~~~~FtGPltIRIhE~DGtyeH~V 133 (707)
+|+.+.|+|.++|+. + .+. ++|+|..--. ....+.+ .......|.-|+++... .+++... .
T Consensus 540 ~W~~q~G~Pvl~V~~--~--~~~--~~l~Q~rf~~--------~~~~~~~~~~~~~~~~~W~IPl~~~~~-~~~~~~~-~ 603 (967)
T 3se6_A 540 TWTLQKGIPLLVVKQ--D--GCS--LRLQQERFLQ--------GVFQEDPEWRALQERYLWHIPLTYSTS-SSNVIHR-H 603 (967)
T ss_dssp HHHHSCSCEEEEEEE--E--TTE--EEEEEEECCC--------C-----------CCSCCCCCCEEEEES-SCCCCEE-E
T ss_pred HHhcCCCCcEEEEEe--c--CCE--EEEEeeeecC--------CCCCCccccccccCCceEEEEEEEEeC-CCCccce-E
Confidence 999999999999986 3 233 5666764210 0000000 00012357788887542 2233222 2
Q ss_pred cccCCCcceEEEEeccchhhHHhhcCCCCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHH-H
Q 005234 134 LPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQ-M 212 (707)
Q Consensus 134 ~~i~~d~~~k~eIp~nsK~k~rR~~K~Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~-M 212 (707)
+ ++.....++++ ++.+||.++++..=..+|+.+...+ .
T Consensus 604 ~--l~~~~~~i~~~---------------------------------------~~~~wi~~N~~~~GyyRV~Yd~~~w~~ 642 (967)
T 3se6_A 604 I--LKSKTDTLDLP---------------------------------------EKTSWVKFNVDSNGYYIVHYEGHGWDQ 642 (967)
T ss_dssp C--CCSSEEEEECS---------------------------------------SCCSCEEESGGGCSSCEEEEETTHHHH
T ss_pred E--ecCCceEEecc---------------------------------------CCCceEEEeCCccEEEEEecCHHHHHH
Confidence 1 22222222211 1135999999999888998876644 4
Q ss_pred HHHHHhhCC---ChHHHHHHH---HHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccc-----cc-cch
Q 005234 213 WINQLEKDG---DVVAQAQAI---AALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-----TD-WAG 280 (707)
Q Consensus 213 w~sQLq~Dr---DVvAQlEAI---~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~-----~~-~~G 280 (707)
.+.||..+. ++..|..-| -+|...+..+....--|.+.|.++. -|-+=..|...|..+..-. .. +..
T Consensus 643 l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~~~l~l~~~l~~E~-~~~~w~~a~~~l~~l~~~~~~~~~~~~~~~ 721 (967)
T 3se6_A 643 LITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHET-SSPALLEGLSYLESFYHMMDRRNISDISEN 721 (967)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHTTGGGTCC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHhccCChHHHHH
Confidence 556776533 666666444 4555555544333334557788876 5666677887777654311 11 111
Q ss_pred HH-HHH----HHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHh
Q 005234 281 LL-HLV----KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 344 (707)
Q Consensus 281 l~-~Li----k~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLk 344 (707)
+. ++. ..|.+.-+. ++ .+..+-.+|..+....+.+.+++ |-.++.+.+-+.+.
T Consensus 722 ~~~~~~~l~~~~~~~lg~~-------~~--~~~~~~~lR~~il~~ac~~g~~~--c~~~A~~~f~~~~~ 779 (967)
T 3se6_A 722 LKRYLLQYFKPVIDRQSWS-------DK--GSVWDRMLRSALLKLACDLNHAP--CIQKAAELFSQWME 779 (967)
T ss_dssp HHHHHHHTTHHHHHHCCSS-------CC--SCHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-------CC--CcHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHhhc
Confidence 11 111 122222121 11 23455567777777777665433 77777777666654
No 8
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.48 E-value=1.4e-06 Score=83.96 Aligned_cols=185 Identities=24% Similarity=0.237 Sum_probs=123.9
Q ss_pred CHHHHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 005234 209 PVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 288 (707)
Q Consensus 209 Pd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~F 288 (707)
....++..| .|+|..-|..|+.+|+..+.+ .++..|.+.|.|+ -+.||..|+.+|+.+..++ ..+.|++.+
T Consensus 20 ~~~~L~~~L-~~~~~~vR~~A~~~L~~~~~~--~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l 90 (211)
T 3ltm_A 20 KVEMYIKNL-QDDSYYVRRAAAYALGKIGDE--RAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKAL 90 (211)
T ss_dssp GHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG--GGHHHHHHHTTCS--CHHHHHHHHHHHHHHCCGG----GHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHH
Confidence 345566666 488999999999999988764 3678888888887 7889999999999988654 367777765
Q ss_pred HhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhc
Q 005234 289 KSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGE 368 (707)
Q Consensus 289 k~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~ 368 (707)
++ .+..|+.+...+|+.+.+ +++...|+.+|+. .|..-+..++.+||.
T Consensus 91 ~~------------------~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d--------~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 91 KD------------------EDGWVRQSAAVALGQIGD------ERAVEPLIKALKD--------EDWFVRIAAAFALGE 138 (211)
T ss_dssp TC------------------SSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--------SSHHHHHHHHHHHHH
T ss_pred cC------------------CCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhC--------CCHHHHHHHHHHHHH
Confidence 42 234589999999998864 3566778887753 234455888899987
Q ss_pred ccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHH
Q 005234 369 LEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEAS 448 (707)
Q Consensus 369 ~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~ 448 (707)
+.-. .++..|.++++ +.+.-|..+++.+|.++. . +.+...+...... ....||.+|.
T Consensus 139 ~~~~--------~~~~~L~~~l~------d~~~~vr~~a~~aL~~~~----~----~~~~~~L~~~l~d-~~~~vr~~A~ 195 (211)
T 3ltm_A 139 IGDE--------RAVEPLIKALK------DEDGWVRQSAADALGEIG----G----ERVRAAMEKLAET-GTGFARKVAV 195 (211)
T ss_dssp HCCG--------GGHHHHHHHTT------CSSHHHHHHHHHHHHHHC----S----HHHHHHHHHHHHH-CCHHHHHHHH
T ss_pred cCCH--------HHHHHHHHHHc------CCCHHHHHHHHHHHHHhC----c----hhHHHHHHHHHhC-CCHHHHHHHH
Confidence 6421 13344555553 334567888888888863 1 2233333333333 2356899999
Q ss_pred HHhhhhhhc
Q 005234 449 RALLDLEFH 457 (707)
Q Consensus 449 ~aL~~l~~~ 457 (707)
++|..+...
T Consensus 196 ~aL~~~~~~ 204 (211)
T 3ltm_A 196 NYLETHKSF 204 (211)
T ss_dssp HHHHC----
T ss_pred HHHHhcCCC
Confidence 998887543
No 9
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.29 E-value=9e-06 Score=77.65 Aligned_cols=180 Identities=22% Similarity=0.191 Sum_probs=121.1
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhcc
Q 005234 213 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRR 292 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~ 292 (707)
..-++-.|+|..-|..|+.+|+..+.. .++..|.+.|.|+ -+.||..|+.+|+.+..++ ..+.|++++.+
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~--~~~~~L~~~l~~~--~~~vr~~a~~~L~~~~~~~----~~~~L~~~l~d-- 87 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDE--RAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKALKD-- 87 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCG--GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTTC--
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHHcC--
Confidence 333444889999999999999988764 3578888999877 6889999999999988654 36777776532
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhccccc
Q 005234 293 FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFG 372 (707)
Q Consensus 293 ~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~ 372 (707)
.+..|+.+...+|+.+.+ +++...|+.+|+. +|..-+.+++.+||.+.-.
T Consensus 88 ----------------~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d--------~~~~vr~~a~~aL~~~~~~ 137 (201)
T 3ltj_A 88 ----------------EDGWVRQSAAVALGQIGD------ERAVEPLIKALKD--------EDWFVRIAAAFALGEIGDE 137 (201)
T ss_dssp ----------------SSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--------SSHHHHHHHHHHHHHHTCG
T ss_pred ----------------CCHHHHHHHHHHHHHhCc------HHHHHHHHHHHcC--------CCHHHHHHHHHHHHHhCCH
Confidence 234589999999998865 3466777777742 2344458889999876421
Q ss_pred ccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhh
Q 005234 373 QQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALL 452 (707)
Q Consensus 373 ~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~ 452 (707)
.++..|..+++ +-..-|..+++.+|.+++ . +.....+..+... ....||.+|.++|.
T Consensus 138 --------~~~~~L~~~l~------d~~~~vr~~A~~aL~~~~----~----~~~~~~L~~~l~d-~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 138 --------RAVEPLIKALK------DEDGWVRQSAADALGEIG----G----ERVRAAMEKLAET-GTGFARKVAVNYLE 194 (201)
T ss_dssp --------GGHHHHHHHTT------CSSHHHHHHHHHHHHHHC----S----HHHHHHHHHHHHH-CCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHc------CCCHHHHHHHHHHHHHhC----c----hhHHHHHHHHHhC-CCHHHHHHHHHHHH
Confidence 23344555554 223467788888887763 1 2222233333322 23678888888887
Q ss_pred hhh
Q 005234 453 DLE 455 (707)
Q Consensus 453 ~l~ 455 (707)
.+.
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 753
No 10
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.25 E-value=5.4e-05 Score=75.96 Aligned_cols=214 Identities=13% Similarity=0.009 Sum_probs=141.0
Q ss_pred CHHHHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 005234 209 PVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 288 (707)
Q Consensus 209 Pd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~F 288 (707)
....++..| .|+|..-|..|+.+|+..+.+ .++..|.+.+.|+ -+.||..|+.+|+.+...... ...++..+
T Consensus 24 ~i~~L~~~L-~~~~~~vr~~A~~~L~~~~~~--~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~~~~---~~~l~~~L 95 (280)
T 1oyz_A 24 NDDELFRLL-DDHNSLKRISSARVLQLRGGQ--DAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKC---EDNVFNIL 95 (280)
T ss_dssp CHHHHHHHT-TCSSHHHHHHHHHHHHHHCCH--HHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTT---HHHHHHHH
T ss_pred hHHHHHHHH-HcCCHHHHHHHHHHHHccCCc--hHHHHHHHHHcCC--CHHHHHHHHHHHHHhcccccc---chHHHHHH
Confidence 345677777 578999999999999998754 5788999999888 679999999999999854321 23333333
Q ss_pred Hhcc-CCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhh
Q 005234 289 KSRR-FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVG 367 (707)
Q Consensus 289 k~~~-~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg 367 (707)
.+.. -+ .+..|+.+...||+.+...+....+++...|+.+|+. .|..-+.+++.+||
T Consensus 96 ~~~~~~d--------------~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d--------~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 96 NNMALND--------------KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD--------KSTNVRRATAFAIS 153 (280)
T ss_dssp HHHHHHC--------------SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC--------SCHHHHHHHHHHHH
T ss_pred HHHHhcC--------------CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC--------CCHHHHHHHHHHHH
Confidence 2100 01 2345999999999998754433456788888888853 23455689999999
Q ss_pred cccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHH
Q 005234 368 ELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEA 447 (707)
Q Consensus 368 ~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA 447 (707)
.+.-. .++..|..+++ +-+.-|..+++.+|.+++ .. + +.+...+...... ....||..|
T Consensus 154 ~~~~~--------~~~~~L~~~l~------d~~~~vr~~a~~aL~~~~---~~--~-~~~~~~L~~~l~d-~~~~vR~~A 212 (280)
T 1oyz_A 154 VINDK--------ATIPLLINLLK------DPNGDVRNWAAFAININK---YD--N-SDIRDCFVEMLQD-KNEEVRIEA 212 (280)
T ss_dssp TC-----------CCHHHHHHHHT------CSSHHHHHHHHHHHHHHT---CC--C-HHHHHHHHHHTTC-SCHHHHHHH
T ss_pred hcCCH--------HHHHHHHHHHc------CCCHHHHHHHHHHHHhhc---cC--c-HHHHHHHHHHhcC-CCHHHHHHH
Confidence 86421 13345555554 223458888888887763 11 1 2222233332322 347899999
Q ss_pred HHHhhhhhhccCChhHHHHHHHHHHhcCccch
Q 005234 448 SRALLDLEFHCNGIDSALSLFIKSVEEEPSLR 479 (707)
Q Consensus 448 ~~aL~~l~~~~~g~~~al~~~l~~l~~dp~~r 479 (707)
.++|..++. ..++..++..+ .||+.|
T Consensus 213 ~~aL~~~~~-----~~~~~~L~~~l-~d~~vr 238 (280)
T 1oyz_A 213 IIGLSYRKD-----KRVLSVLCDEL-KKNTVY 238 (280)
T ss_dssp HHHHHHTTC-----GGGHHHHHHHH-TSSSCC
T ss_pred HHHHHHhCC-----HhhHHHHHHHh-cCccHH
Confidence 999999762 34677777777 456654
No 11
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=98.18 E-value=1.3e-07 Score=108.04 Aligned_cols=75 Identities=15% Similarity=0.393 Sum_probs=65.2
Q ss_pred ChhhccC-hHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhH----HhhhccCCCcceEEEEEEEeC
Q 005234 1 MLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEF----FPRWVGTCGCPVLRMGFSYNK 75 (707)
Q Consensus 1 MLek~iG-~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~F----FdQWVygsG~P~f~Vs~~FNk 75 (707)
|||+.+| ++.|.++|+.|+.++. .++++|+||..++++++ |+++++| |++|++++|+|.++|++.++.
T Consensus 390 mL~~~lG~~~~F~~~lr~Yl~~~~----~~~~tt~Df~~~l~~~~---~~~~~~~~~~~~~~W~~~~G~P~v~v~~d~~~ 462 (608)
T 3u9w_A 390 YLEQLLGGPEIFLGFLKAYVEKFS----YKSITTDDWKDFLYSYF---KDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTL 462 (608)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHT----TEEECHHHHHHHHHHHT---GGGHHHHHTSCHHHHHHCCSSCSSCCCCCCTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHh---ccccchhhHHHHHHHhcCCCCCceeeeecccc
Confidence 8999998 6889999999999984 56999999999999998 5689988 999999999999999887766
Q ss_pred CccEEEE
Q 005234 76 RKNIVEL 82 (707)
Q Consensus 76 Kr~~VEL 82 (707)
.+.++++
T Consensus 463 ~~~~~~l 469 (608)
T 3u9w_A 463 TNACIAL 469 (608)
T ss_dssp THHHHHH
T ss_pred ccceeeH
Confidence 6655543
No 12
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=97.93 E-value=2.1e-06 Score=98.04 Aligned_cols=67 Identities=15% Similarity=0.266 Sum_probs=57.6
Q ss_pred ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCC-ccChhh-HHhhhccCCCcceEEEEE
Q 005234 1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLE-RPFLKE-FFPRWVGTCGCPVLRMGF 71 (707)
Q Consensus 1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~-g~dL~~-FFdQWVygsG~P~f~Vs~ 71 (707)
|||..+|++.|+++|+.|+.++. .++++|+||..+++++++.. ..+++. ||++|++++|+|.+++++
T Consensus 395 mL~~~lG~e~F~~~lr~yl~~~~----~~~~t~~df~~~l~~~~~~~~~~~l~~~~~~~W~~~~G~P~~~~~~ 463 (605)
T 3cia_A 395 YLEEKFGRERFDAFVLEYFDSHA----FQSLGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQP 463 (605)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTT----TEEECHHHHHHHHHHTTTTTSTTSSCHHHHHHHHHSSSCCSSSCCC
T ss_pred HHHHHhChHHHHHHHHHHHHHhC----cCCCCHHHHHHHHHHHhccccccccchhhHHHHhcCCCCCceeccC
Confidence 89999999999999999999984 55899999999999998520 125766 899999999999997655
No 13
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=97.89 E-value=2.3e-06 Score=98.38 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=56.9
Q ss_pred ChhhccCh-HHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhh-HHhhhccCCCcceEEEEE
Q 005234 1 MLEKQMGS-NFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKE-FFPRWVGTCGCPVLRMGF 71 (707)
Q Consensus 1 MLek~iG~-e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~-FFdQWVygsG~P~f~Vs~ 71 (707)
|||..+|+ +.|+++|++|+.++. .++++|+||..+++++++..+.++++ ||++|++++|+|. .+++
T Consensus 399 mL~~~lG~~e~F~~~Lr~Yl~~~~----~~~~tt~Df~~~l~~~~~~~~~~l~~~~~~~W~~~~G~P~-~~~~ 466 (632)
T 2xq0_A 399 HLETILGGKAEFDPFIRHYFKKFA----KKSLDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPP-RPHF 466 (632)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHTT----TEEECHHHHHHHHHHHCGGGHHHHHTSCHHHHHHCCSCCC-CCCC
T ss_pred HHHHHhCChHHHHHHHHHHHHHhC----cCCCCHHHHHHHHHHHhhhccccccHHHHHHHhcCCCCCC-CcCC
Confidence 89999999 999999999999983 55899999999999998421257887 8999999999998 6543
No 14
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.81 E-value=0.00017 Score=68.65 Aligned_cols=150 Identities=25% Similarity=0.267 Sum_probs=111.0
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHh
Q 005234 211 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 290 (707)
Q Consensus 211 ~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~ 290 (707)
..+...| .|+|...|..|+.+|+..+.+ .++..|.+.|.|+ -+.||..|+.+|+.+..++ ....|++++.+
T Consensus 48 ~~L~~~l-~~~~~~vr~~a~~~L~~~~~~--~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d 118 (201)
T 3ltj_A 48 EPLIKAL-KDEDAWVRRAAADALGQIGDE--RAVEPLIKALKDE--DGWVRQSAAVALGQIGDER----AVEPLIKALKD 118 (201)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHHHCCG--GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTTC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHhhCCH--HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHcC
Confidence 3444444 789999999999999998765 4678899999887 7899999999999998764 36777776532
Q ss_pred ccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhccc
Q 005234 291 RRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELE 370 (707)
Q Consensus 291 ~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~ 370 (707)
.+..|+.+...||+.+.+ +++...|..+|+. .|..-+.+++.+|+.+.
T Consensus 119 ------------------~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d--------~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 119 ------------------EDWFVRIAAAFALGEIGD------ERAVEPLIKALKD--------EDGWVRQSAADALGEIG 166 (201)
T ss_dssp ------------------SSHHHHHHHHHHHHHHTC------GGGHHHHHHHTTC--------SSHHHHHHHHHHHHHHC
T ss_pred ------------------CCHHHHHHHHHHHHHhCC------HHHHHHHHHHHcC--------CCHHHHHHHHHHHHHhC
Confidence 234699999999999965 3567778888863 23445589999999874
Q ss_pred ccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHH
Q 005234 371 FGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 415 (707)
Q Consensus 371 ~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~ 415 (707)
- ..++..|..+++ +....|..+++++|.++.
T Consensus 167 ~--------~~~~~~L~~~l~------d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 167 G--------ERVRAAMEKLAE------TGTGFARKVAVNYLETHK 197 (201)
T ss_dssp S--------HHHHHHHHHHHH------HCCHHHHHHHHHHHHHCC
T ss_pred c--------hhHHHHHHHHHh------CCCHHHHHHHHHHHHHHH
Confidence 2 234455666664 224568888888888763
No 15
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.77 E-value=0.00038 Score=69.74 Aligned_cols=205 Identities=16% Similarity=0.042 Sum_probs=131.9
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCC---ChHHHHHHHHH-HhcCCCccHHHHHHHHHHHhcccccccc--cchHHHHH
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPH---LSFNVVNTLNN-FLSDSKAFWRVRIEAAYALANTASEETD--WAGLLHLV 285 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~---~s~~~v~aL~r-tL~D~ryFygVR~eAA~ALak~a~~~~~--~~Gl~~Li 285 (707)
...-++-.|+|...|..|+.+|+.... ........|.. .+.|+ -+.||..|+.+|+.+...... -..++.|+
T Consensus 57 ~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~--~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~ 134 (280)
T 1oyz_A 57 RLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDK--SACVRATAIESTAQRCKKNPIYSPKIVEQSQ 134 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCcccHHHHHHHH
Confidence 344455678999999999999998652 22245567764 45666 789999999999998743211 11244555
Q ss_pred HHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHH
Q 005234 286 KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQS 365 (707)
Q Consensus 286 k~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~A 365 (707)
+..++ .+..|+.+...||+.+.+. ++...|+.+|+. +|...+..++.+
T Consensus 135 ~~l~d------------------~~~~vR~~a~~aL~~~~~~------~~~~~L~~~l~d--------~~~~vr~~a~~a 182 (280)
T 1oyz_A 135 ITAFD------------------KSTNVRRATAFAISVINDK------ATIPLLINLLKD--------PNGDVRNWAAFA 182 (280)
T ss_dssp HHTTC------------------SCHHHHHHHHHHHHTC---------CCHHHHHHHHTC--------SSHHHHHHHHHH
T ss_pred HHhhC------------------CCHHHHHHHHHHHHhcCCH------HHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence 54322 2356999999999988652 467777788764 345556899999
Q ss_pred hhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHH
Q 005234 366 VGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRV 445 (707)
Q Consensus 366 Lg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRi 445 (707)
||.+... + ..++..+...++ +-+.-|...++.+|.+++ ..--++.+...+. . .+||.
T Consensus 183 L~~~~~~--~----~~~~~~L~~~l~------d~~~~vR~~A~~aL~~~~----~~~~~~~L~~~l~----d---~~vr~ 239 (280)
T 1oyz_A 183 ININKYD--N----SDIRDCFVEMLQ------DKNEEVRIEAIIGLSYRK----DKRVLSVLCDELK----K---NTVYD 239 (280)
T ss_dssp HHHHTCC--C----HHHHHHHHHHTT------CSCHHHHHHHHHHHHHTT----CGGGHHHHHHHHT----S---SSCCH
T ss_pred HHhhccC--c----HHHHHHHHHHhc------CCCHHHHHHHHHHHHHhC----CHhhHHHHHHHhc----C---ccHHH
Confidence 9886421 1 234455555554 234568888888888864 1111233333332 2 23999
Q ss_pred HHHHHhhhhhhccCChhHHHHHHHHHHhcCccc
Q 005234 446 EASRALLDLEFHCNGIDSALSLFIKSVEEEPSL 478 (707)
Q Consensus 446 aA~~aL~~l~~~~~g~~~al~~~l~~l~~dp~~ 478 (707)
+|.++|..++.. .++..+...+..+++.
T Consensus 240 ~a~~aL~~i~~~-----~~~~~L~~~l~~~~~~ 267 (280)
T 1oyz_A 240 DIIEAAGELGDK-----TLLPVLDTMLYKFDDN 267 (280)
T ss_dssp HHHHHHHHHCCG-----GGHHHHHHHHTTSSCC
T ss_pred HHHHHHHhcCch-----hhhHHHHHHHhcCCCc
Confidence 999999999953 4677778888665544
No 16
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.76 E-value=0.00022 Score=68.51 Aligned_cols=148 Identities=24% Similarity=0.249 Sum_probs=109.9
Q ss_pred HHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccC
Q 005234 214 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 293 (707)
Q Consensus 214 ~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~ 293 (707)
..++-.|+|...|..|+.+|+..+.+ .+...|.+.|.|+ -+.||..|+.+|+++..++. ++.|+++..+
T Consensus 55 L~~~l~~~~~~vr~~a~~aL~~~~~~--~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~~~----~~~L~~~l~d--- 123 (211)
T 3ltm_A 55 LIKALKDEDAWVRRAAADALGQIGDE--RAVEPLIKALKDE--DGWVRQSAAVALGQIGDERA----VEPLIKALKD--- 123 (211)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCG--GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGGG----HHHHHHHTTC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhCCH--HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHHH----HHHHHHHHhC---
Confidence 33444688999999999999998765 4678899999887 68899999999999987643 6777776532
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccc
Q 005234 294 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQ 373 (707)
Q Consensus 294 ~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~ 373 (707)
.+..|+.+...||+.+.+ +++...|+.+|+. .|..-+.+++.+|+.+.-
T Consensus 124 ---------------~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d--------~~~~vr~~a~~aL~~~~~-- 172 (211)
T 3ltm_A 124 ---------------EDWFVRIAAAFALGEIGD------ERAVEPLIKALKD--------EDGWVRQSAADALGEIGG-- 172 (211)
T ss_dssp ---------------SSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--------SSHHHHHHHHHHHHHHCS--
T ss_pred ---------------CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHcC--------CCHHHHHHHHHHHHHhCc--
Confidence 234699999999999965 3577788888852 234455899999998742
Q ss_pred cchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHH
Q 005234 374 QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 415 (707)
Q Consensus 374 ~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~ 415 (707)
..++..|..+++ +-...|..+++++|.++.
T Consensus 173 ------~~~~~~L~~~l~------d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 173 ------ERVRAAMEKLAE------TGTGFARKVAVNYLETHK 202 (211)
T ss_dssp ------HHHHHHHHHHHH------HCCHHHHHHHHHHHHC--
T ss_pred ------hhHHHHHHHHHh------CCCHHHHHHHHHHHHhcC
Confidence 245566666665 223458888999888875
No 17
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.58 E-value=4.3e-05 Score=69.14 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=88.4
Q ss_pred ccCCHHHHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHH
Q 005234 206 FNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLV 285 (707)
Q Consensus 206 ~~QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Li 285 (707)
+..+......++-.|+|..-|..|+.+|+..+... +..|.+.|.|+ -+.||..|+.+|+.+..+. ..+.|+
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~---~~~L~~~L~d~--~~~vR~~A~~aL~~~~~~~----a~~~L~ 79 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEA---FEPLLESLSNE--DWRIRGAAAWIIGNFQDER----AVEPLI 79 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSSTT---HHHHHHGGGCS--CHHHHHHHHHHHGGGCSHH----HHHHHH
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH---HHHHHHHHcCC--CHHHHHHHHHHHHhcCCHH----HHHHHH
Confidence 34444555555667889999999999999887652 48899999887 7999999999999998754 377888
Q ss_pred HHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHH
Q 005234 286 KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQS 365 (707)
Q Consensus 286 k~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~A 365 (707)
+.+++ .+..|+.+...||+.+.+ +++...|+.+|+. +|..-+.+++.|
T Consensus 80 ~~L~d------------------~~~~VR~~A~~aL~~~~~------~~a~~~L~~~l~d--------~~~~vr~~A~~a 127 (131)
T 1te4_A 80 KLLED------------------DSGFVRSGAARSLEQIGG------ERVRAAMEKLAET--------GTGFARKVAVNY 127 (131)
T ss_dssp HHHHH------------------CCTHHHHHHHHHHHHHCS------HHHHHHHHHHTTS--------CCTHHHHHHHHH
T ss_pred HHHcC------------------CCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 88764 123599999999999864 5788889898852 234555888999
Q ss_pred hhcc
Q 005234 366 VGEL 369 (707)
Q Consensus 366 Lg~~ 369 (707)
|+.+
T Consensus 128 L~~i 131 (131)
T 1te4_A 128 LETH 131 (131)
T ss_dssp GGGC
T ss_pred HHhC
Confidence 8863
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.28 E-value=0.0022 Score=69.74 Aligned_cols=285 Identities=12% Similarity=0.077 Sum_probs=151.2
Q ss_pred HHHHhhCCChHHHHHHHHHHHhC----CCC------hHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHH
Q 005234 214 INQLEKDGDVVAQAQAIAALEAL----PHL------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLH 283 (707)
Q Consensus 214 ~sQLq~DrDVvAQlEAI~aL~~~----p~~------s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~ 283 (707)
..++-.|.+..-|..|+.+|+.. +.. .......|.+.+.|+ -|.||..|+.+|+.++.--..-.-..+
T Consensus 286 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~ 363 (588)
T 1b3u_A 286 FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--NQHVKSALASVIMGLSPILGKDNTIEH 363 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGGGGHHHHCHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 34555788888888888777643 111 112455666777777 799999999999998742110001233
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCC--hHHHHHHHHHHHhhcCCCCCCCChhHH-HH
Q 005234 284 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS--PREAVEFVLQLLKYNDNNGNPYSDVFW-LA 360 (707)
Q Consensus 284 Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~--P~ev~~fLldlLkyNDNS~N~ysDs~Y-vA 360 (707)
++..|....-++ +..|+.+...+++.+-..-|.. ...+...|..+++ ++++. +.
T Consensus 364 l~p~l~~~l~d~--------------~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~---------d~~~~vr~ 420 (588)
T 1b3u_A 364 LLPLFLAQLKDE--------------CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE---------DAKWRVRL 420 (588)
T ss_dssp THHHHHHHHTCS--------------CHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT---------CSSHHHHH
T ss_pred HHHHHHHHhCCC--------------chHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc---------CCCchHHH
Confidence 444443322111 1348888888888775443311 1334555555543 12333 36
Q ss_pred HHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCc
Q 005234 361 ALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTI 440 (707)
Q Consensus 361 ~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~ 440 (707)
+++++|+.+.-.-....+...++..+.++++ | -..-|..+++.++..+........-.+.++..+..... ...
T Consensus 421 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d-----~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-~~~ 493 (588)
T 1b3u_A 421 AIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-D-----HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSG-DPN 493 (588)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-C-----SSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTT-CSC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc-C-----CcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhh-CCC
Confidence 7778887643110011122345555666554 2 23457778888888875322110001233333333222 345
Q ss_pred HHHHHHHHHHhhhhhhccCCh---hHHHHHHHHHHhcCccchhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHHHHhc
Q 005234 441 WQVRVEASRALLDLEFHCNGI---DSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLE 517 (707)
Q Consensus 441 ~~vRiaA~~aL~~l~~~~~g~---~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~ 517 (707)
..+|.+|++++..++...+.. ...+..++..+ .|+.+.+|..... ++..+....+. . .-.+.+...+..+.
T Consensus 494 ~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l-~d~~~~Vr~~a~~-~l~~l~~~~~~---~-~~~~~~~p~l~~l~ 567 (588)
T 1b3u_A 494 YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA-GDPVANVRFNVAK-SLQKIGPILDN---S-TLQSEVKPILEKLT 567 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGG-GCSCHHHHHHHHH-HHHHHGGGSCH---H-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhC-CCCCchHHHHHHH-HHHHHHHHhch---h-hhHHHHHHHHHHHc
Confidence 799999999999987543211 12333344443 5777665532222 22222222211 1 11245555555543
Q ss_pred cccccccchhhhhHHHHHHHhh
Q 005234 518 SRIAFNNVFLRHHLFGILQILA 539 (707)
Q Consensus 518 ~~~~~~d~~lR~~~~~~~~~L~ 539 (707)
+ -.|..+|..+...+..|.
T Consensus 568 ~---d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 568 Q---DQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp T---CSSHHHHHHHHHHHHHTT
T ss_pred C---CCchhHHHHHHHHHHHhh
Confidence 3 248899999888876664
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.15 E-value=0.0061 Score=66.30 Aligned_cols=288 Identities=16% Similarity=0.092 Sum_probs=158.3
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhCC---CC---hHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHH
Q 005234 213 WINQLEKDGDVVAQAQAIAALEALP---HL---SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVK 286 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~p---~~---s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik 286 (707)
...++-.|.|..-|..|+++|+... .. .......|...+.|+ .+.||..|+.+|+.++.......-...++.
T Consensus 168 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 245 (588)
T 1b3u_A 168 YFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE--QDSVRLLAVEACVNIAQLLPQEDLEALVMP 245 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS--CHHHHTTHHHHHHHHHHHSCHHHHHHHTHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3446668999999999999988642 11 012456677777787 689999999999988753221001123333
Q ss_pred HHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCC--ChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHH
Q 005234 287 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK--SPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQ 364 (707)
Q Consensus 287 ~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~--~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ 364 (707)
.+....-+ .++.||++...+|+.+-..-|. ...++...|+.+++. +|...+.+++.
T Consensus 246 ~l~~~~~d--------------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--------~~~~vr~~a~~ 303 (588)
T 1b3u_A 246 TLRQAAED--------------KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD--------CEAEVRAAASH 303 (588)
T ss_dssp HHHHHHTC--------------SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTC--------SSHHHHHHHHH
T ss_pred HHHHHccC--------------CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCC--------CcHHHHHHHHH
Confidence 33332111 2356999999999887543221 123567777777753 23445677888
Q ss_pred Hhhcccc--cccch--HHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCc
Q 005234 365 SVGELEF--GQQSI--LFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTI 440 (707)
Q Consensus 365 ALg~~~~--~~~~~--~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~ 440 (707)
+|+.+.- +.... .+...++..+.++++ | ++ .-|..++..++..++.........+.+...+..... +..
T Consensus 304 ~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~-d---~~--~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~ 376 (588)
T 1b3u_A 304 KVKEFCENLSADCRENVIMSQILPCIKELVS-D---AN--QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK-DEC 376 (588)
T ss_dssp HHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT-C---SC--HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT-CSC
T ss_pred HHHHHHHHhChhhhhhHHHHHHHHHHHHHhc-C---CC--HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CCc
Confidence 8887532 11111 245556666666664 2 23 356667777776664221110001122222322222 234
Q ss_pred HHHHHHHHHHhhhhhhccCCh---hHHHHHHHHHHhcCccchhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHHHHhc
Q 005234 441 WQVRVEASRALLDLEFHCNGI---DSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLE 517 (707)
Q Consensus 441 ~~vRiaA~~aL~~l~~~~~g~---~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~ 517 (707)
..||.+|+++|..+....+.. ...+..+...+ .|+..+.|..... ++..+....+.+ .-.+.++..+....
T Consensus 377 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~-~d~~~~vr~~~~~-~l~~l~~~~~~~----~~~~~l~~~l~~~l 450 (588)
T 1b3u_A 377 PEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA-EDAKWRVRLAIIE-YMPLLAGQLGVE----FFDEKLNSLCMAWL 450 (588)
T ss_dssp HHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHH-TCSSHHHHHHHHH-HHHHHHHHHCGG----GCCHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh-cCCCchHHHHHHH-HHHHHHHHcCHH----HHHHHHHHHHHHHh
Confidence 789999999999886432211 12333344433 6777776643332 222222222221 22356666555544
Q ss_pred cccccccchhhhhHHHHHHHhhc
Q 005234 518 SRIAFNNVFLRHHLFGILQILAG 540 (707)
Q Consensus 518 ~~~~~~d~~lR~~~~~~~~~L~g 540 (707)
.. .+..+|..+...+..+..
T Consensus 451 ~d---~~~~Vr~~a~~~l~~l~~ 470 (588)
T 1b3u_A 451 VD---HVYAIREAATSNLKKLVE 470 (588)
T ss_dssp GC---SSHHHHHHHHHHHHHHHH
T ss_pred cC---CcHHHHHHHHHHHHHHHH
Confidence 31 356788887777655543
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.78 E-value=0.058 Score=60.73 Aligned_cols=164 Identities=13% Similarity=0.117 Sum_probs=101.5
Q ss_pred hCCChHHHHHHHHHHHhCCCCh--HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCC
Q 005234 219 KDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDEN 296 (707)
Q Consensus 219 ~DrDVvAQlEAI~aL~~~p~~s--~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~ 296 (707)
.|+|..-|--|+++|+....+. ......|.++|.|+ -..||..||.+|.++.....+..--..++..+.+...++
T Consensus 96 ~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~- 172 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS- 172 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS-
T ss_pred CCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC-
Confidence 5688888999999999876542 12344578888877 789999999999998753322110113444454443333
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCC-----hHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccc
Q 005234 297 IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 371 (707)
Q Consensus 297 s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~-----P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~ 371 (707)
+..|+.+-+.||+.+...+... ...+..-|+..|.. .|.|....++++|+....
T Consensus 173 -------------d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--------~~~~~q~~il~~l~~l~~ 231 (591)
T 2vgl_B 173 -------------NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE--------CTEWGQIFILDCLSNYNP 231 (591)
T ss_dssp -------------CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHTSCC
T ss_pred -------------ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC--------CCchHHHHHHHHHHHhCC
Confidence 2469999999999998654321 12344455566643 346667889999987653
Q ss_pred cccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHH
Q 005234 372 GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQI 414 (707)
Q Consensus 372 ~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L 414 (707)
. +......+++-+..+ .-+-+..|...|+.++..+
T Consensus 232 ~--~~~~~~~~l~~l~~~------l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 232 K--DDREAQSICERVTPR------LSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp C--SHHHHHHHHHHHTTC------SCSSTTHHHHHHHHHHHHS
T ss_pred C--ChHHHHHHHHHHHHH------HcCCChHHHHHHHHHHHHH
Confidence 2 222233343333322 2344566777777777665
No 21
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.56 E-value=0.0053 Score=55.23 Aligned_cols=87 Identities=16% Similarity=0.058 Sum_probs=68.5
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhc
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 291 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~ 291 (707)
..+.++-.|+|...|..|+.+|+..+.. .++..|.+.|.|+ -+.||..|+.+|+++..++ .++.|++..++
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~~--~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~~~----a~~~L~~~l~d- 115 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQDE--RAVEPLIKLLEDD--SGFVRSGAARSLEQIGGER----VRAAMEKLAET- 115 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCSH--HHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSHH----HHHHHHHHTTS-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHhC-
Confidence 3344555789999999999999998864 4788999999887 7899999999999998654 36777776532
Q ss_pred cCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcc
Q 005234 292 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV 324 (707)
Q Consensus 292 ~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~v 324 (707)
.+..|+.+...||+.+
T Consensus 116 -----------------~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 116 -----------------GTGFARKVAVNYLETH 131 (131)
T ss_dssp -----------------CCTHHHHHHHHHGGGC
T ss_pred -----------------CCHHHHHHHHHHHHhC
Confidence 1245999999999864
No 22
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=96.34 E-value=0.0013 Score=75.37 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=50.8
Q ss_pred hhhcc-ChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceE
Q 005234 2 LEKQM-GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVL 67 (707)
Q Consensus 2 Lek~i-G~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f 67 (707)
||++. |+++|.++++.++.+... ....+++++|..++|+++ |.||.+||+||+++.|.|-+
T Consensus 391 lR~~s~g~~sldd~mr~l~~~~~~--~~~~~t~~d~~~~~e~~s---G~dl~~ff~~~l~~t~~~p~ 452 (597)
T 4fgm_A 391 LRLQSDHKLTLARVMKELWHEFGK--TSIGTADDTVINWLNQYP---GIDISDFLKDALYNKESLSL 452 (597)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHTT--TTCCBCTTHHHHHHHTST---TCCCHHHHHHHHHSCSCCCC
T ss_pred HHhhcCCchHHHHHHHHHHHHhCc--CCCCCCHHHHHHHHHHhc---CcCHHHHHHHHHhCCCCcch
Confidence 44444 678999999999988732 245899999999999999 56899999999999999755
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.31 E-value=0.19 Score=56.61 Aligned_cols=281 Identities=15% Similarity=0.173 Sum_probs=154.2
Q ss_pred HHHHhhCCChHHHHHHHHHHHhC----CCChH--HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccccc-------ch
Q 005234 214 INQLEKDGDVVAQAQAIAALEAL----PHLSF--NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW-------AG 280 (707)
Q Consensus 214 ~sQLq~DrDVvAQlEAI~aL~~~----p~~s~--~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~-------~G 280 (707)
+-++-.|++..-|..|+.++.+. |..-. .....|...|.|+ -.+||..|+.+|+.+....+.. ..
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS--NPMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 44677899999999999998753 33211 2457888888887 5899999999999998754321 12
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHH
Q 005234 281 LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLA 360 (707)
Q Consensus 281 l~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA 360 (707)
+..|++...+ + +-|+|..|.++++.+... .+.++..++-.++..-. + ++.--+-
T Consensus 204 ~~~Ll~~l~~--~----------------~~~~q~~il~~l~~l~~~---~~~~~~~~l~~l~~~l~-~----~~~~V~~ 257 (591)
T 2vgl_B 204 INKLLTALNE--C----------------TEWGQIFILDCLSNYNPK---DDREAQSICERVTPRLS-H----ANSAVVL 257 (591)
T ss_dssp HHHHHHHHHH--C----------------CHHHHHHHHHHHHTSCCC---SHHHHHHHHHHHTTCSC-S----STTHHHH
T ss_pred HHHHHHcCCC--C----------------CchHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHc-C----CChHHHH
Confidence 4556655543 1 236888999999888633 24444444333332211 1 2234446
Q ss_pred HHHHHhhcccccc-cchHHHH----HHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhccc
Q 005234 361 ALVQSVGELEFGQ-QSILFLS----SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFR 435 (707)
Q Consensus 361 ~lI~ALg~~~~~~-~~~~~l~----~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt 435 (707)
+++.+++.+.-.- .+...++ ++..-+..+++ + ..-|...+|+++.++.......+. ..+ ..+ +.
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~------~-d~~vr~~aL~~l~~i~~~~p~~~~-~~~-~~~--~~ 326 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS------G-EPEVQYVALRNINLIVQKRPEILK-QEI-KVF--FV 326 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT------S-CHHHHHHHHHHHHHHHHHCCSTTT-TCT-TTT--SC
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc------C-CccHHHHHHHHHHHHHHhChHHHH-HHH-Hhh--ee
Confidence 7777777653110 1111222 22222223321 3 345677788888888643211111 111 111 12
Q ss_pred CCCCcHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHhc-CccchhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHHH
Q 005234 436 DFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLN 514 (707)
Q Consensus 436 ~~g~~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~~l~~-dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 514 (707)
....+..||..|++.|..++.. ...+..+.-+++++.. |+.+|.. .+.++..|+.+.. -+....+..|.
T Consensus 327 ~~~d~~~Ir~~al~~L~~l~~~-~nv~~iv~~L~~~l~~~d~~~r~~---~v~aI~~la~~~~------~~~~~~v~~Ll 396 (591)
T 2vgl_B 327 KYNDPIYVKLEKLDIMIRLASQ-ANIAQVLAELKEYATEVDVDFVRK---AVRAIGRCAIKVE------QSAERCVSTLL 396 (591)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCS-STHHHHHHHHHHHTTSSCHHHHHH---HHHHHHHHHTTCH------HHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHCCh-hhHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHHhCh------hHHHHHHHHHH
Confidence 2344589999999999998633 4455566666666633 3333322 2233444443321 12234444444
Q ss_pred HhccccccccchhhhhHHHHHHHhhcCCCccc
Q 005234 515 LLESRIAFNNVFLRHHLFGILQILAGRAPTLY 546 (707)
Q Consensus 515 ~~~~~~~~~d~~lR~~~~~~~~~L~g~~~~l~ 546 (707)
.+.+. .+..++..++..+..+...||.++
T Consensus 397 ~ll~~---~~~~v~~e~i~~l~~ii~~~p~~~ 425 (591)
T 2vgl_B 397 DLIQT---KVNYVVQEAIVVIRDIFRKYPNKY 425 (591)
T ss_dssp HHHHT---CCHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHcc---cchHHHHHHHHHHHHHHHHCcchH
Confidence 44332 234455555555555656677654
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.18 E-value=0.18 Score=57.17 Aligned_cols=284 Identities=13% Similarity=0.082 Sum_probs=142.6
Q ss_pred hCCChHHHHHHHHHHHhCCCCh--HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCC
Q 005234 219 KDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDEN 296 (707)
Q Consensus 219 ~DrDVvAQlEAI~aL~~~p~~s--~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~ 296 (707)
.|++..-|..|+++|+....+. ......+.++|.|+ ---||..||.+|.++....++. ...++....+.-++
T Consensus 117 ~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~~~p~~--v~~~~~~l~~lL~D-- 190 (618)
T 1w63_A 117 NHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTS--NSYLRKKAALCAVHVIRKVPEL--MEMFLPATKNLLNE-- 190 (618)
T ss_dssp SCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHCGGG--GGGGGGGTTTSTTC--
T ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHChHH--HHHHHHHHHHHhCC--
Confidence 4678888889999998876531 12356778888887 5789999999999887532211 11111111111111
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCC---hHHHHHHHHHHHhh----cCCCCCCC---ChhHHHHHHHHHh
Q 005234 297 IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS---PREAVEFVLQLLKY----NDNNGNPY---SDVFWLAALVQSV 366 (707)
Q Consensus 297 s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~---P~ev~~fLldlLky----NDNS~N~y---sDs~YvA~lI~AL 366 (707)
.+..|+-+...+|+.+...+... ...+..-|+.+|+. +.+..-.| .|.|....++++|
T Consensus 191 ------------~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L 258 (618)
T 1w63_A 191 ------------KNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL 258 (618)
T ss_dssp ------------CCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHH
T ss_pred ------------CCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHH
Confidence 34568888889999887543100 01122334444442 22222112 3677778899999
Q ss_pred hcccccccchHHHHHHHHHHHHHHh-cCcCCCCcccHhHHHHHHHHHHHHHHhcCCCC-h-HHHHHhhhcccCCCCcHHH
Q 005234 367 GELEFGQQSILFLSSLLKRIDRLLQ-FDRLMPSYNGILTISCIRTLTQIALKLSGFIS-L-DQVVKLIKPFRDFNTIWQV 443 (707)
Q Consensus 367 g~~~~~~~~~~~l~~vl~eI~R~l~-lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~-~-d~~~~ll~~yt~~g~~~~v 443 (707)
+..... +....+.+++-|.+++. .|... +-++.|-..|++++..+. . .+ . ..+...+..+... ....+
T Consensus 259 ~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~-~~~~aV~~ea~~~i~~l~----~-~~~l~~~a~~~L~~~L~~-~d~~v 329 (618)
T 1w63_A 259 RILGRN--DDDSSEAMNDILAQVATNTETSK-NVGNAILYETVLTIMDIK----S-ESGLRVLAINILGRFLLN-NDKNI 329 (618)
T ss_dssp HHHTTT--CHHHHHTTHHHHHHHHHTSCCSS-THHHHHHHHHHHHHHHSC----C-CHHHHHHHHHHHHHHHTC-SSTTT
T ss_pred HHhCCC--CHHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHhcC----C-CHHHHHHHHHHHHHHHhC-CCCch
Confidence 876532 21122233333444432 12111 123355566667666542 1 11 0 0111222222222 22478
Q ss_pred HHHHHHHhhhhhhccCCh-hHHHHHHHHHHhcCccchhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHH-HHHHhccccc
Q 005234 444 RVEASRALLDLEFHCNGI-DSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVA-LLNLLESRIA 521 (707)
Q Consensus 444 RiaA~~aL~~l~~~~~g~-~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~l~~~~~~~~ 521 (707)
|..|+.+|..++...+.. ...+..++..+ .|++...| ..++.++..-.... .+ ..++. ++..+.+
T Consensus 330 r~~aL~~L~~i~~~~p~~~~~~~~~i~~~l-~d~d~~Ir----~~alelL~~l~~~~---nv--~~iv~eL~~~l~~--- 396 (618)
T 1w63_A 330 RYVALTSLLKTVQTDHNAVQRHRSTIVDCL-KDLDVSIK----RRAMELSFALVNGN---NI--RGMMKELLYFLDS--- 396 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGHHHHHHGG-GSSCHHHH----HHHHHHHHHHCCSS---ST--HHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHc-cCCChhHH----HHHHHHHHHHcccc---cH--HHHHHHHHHHHHh---
Confidence 888888888876442211 11122233333 35554322 22333333322221 12 33333 3333332
Q ss_pred cccchhhhhHHHHHHHhhcCCC
Q 005234 522 FNNVFLRHHLFGILQILAGRAP 543 (707)
Q Consensus 522 ~~d~~lR~~~~~~~~~L~g~~~ 543 (707)
.|...|..++..+-.++-+|+
T Consensus 397 -~d~e~r~~~v~~I~~la~k~~ 417 (618)
T 1w63_A 397 -CEPEFKADCASGIFLAAEKYA 417 (618)
T ss_dssp -CCHHHHHHHHHHHHHHHHSSC
T ss_pred -CCHHHHHHHHHHHHHHHHHhC
Confidence 367788888888888887775
No 25
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.05 E-value=0.075 Score=51.61 Aligned_cols=175 Identities=21% Similarity=0.196 Sum_probs=109.5
Q ss_pred cCCHHHHHHHHhhCCChHHHHHHHHHHHhCCCC---------hHHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc-
Q 005234 207 NQPVQMWINQLEKDGDVVAQAQAIAALEALPHL---------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET- 276 (707)
Q Consensus 207 ~QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~---------s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~- 276 (707)
..++|.+...+-++.|...|.+|+.+|...-+. ...++..|.+.|.++. ..||..|+.+|+.++....
T Consensus 10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNE 87 (252)
T ss_dssp TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHH
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHH
Confidence 345567777776889999999999999542110 0024577889998874 9999999999999986321
Q ss_pred ------ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCC-h----HHHHHHHHHHHhh
Q 005234 277 ------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-P----REAVEFVLQLLKY 345 (707)
Q Consensus 277 ------~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~-P----~ev~~fLldlLky 345 (707)
...|++.|++..++ .+..+++....+|+.+-..+... . ..+...|+++|+.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 149 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSS------------------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGC------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHcCCHHHHHHHHcC------------------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC
Confidence 12256777776543 11248888889998885432100 0 0256788888863
Q ss_pred cCCCCCCCChhHHHHHHHHHhhcccccccch-H-H-HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHH
Q 005234 346 NDNNGNPYSDVFWLAALVQSVGELEFGQQSI-L-F-LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 415 (707)
Q Consensus 346 NDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~-~-~-l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~ 415 (707)
. |.--...++.+|+++....... . . ...++..|.++++ +-..-+...|+.+|..++
T Consensus 150 ~--------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 150 P--------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS------SPNEQILQEALWALSNIA 208 (252)
T ss_dssp S--------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG------CSSHHHHHHHHHHHHHHT
T ss_pred C--------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC------CCCHHHHHHHHHHHHHHh
Confidence 2 3455678888888876432111 0 1 1234455566554 224556666777777764
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.01 E-value=0.083 Score=50.71 Aligned_cols=167 Identities=24% Similarity=0.253 Sum_probs=106.0
Q ss_pred HHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc-------c
Q 005234 214 INQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-------D 277 (707)
Q Consensus 214 ~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~-------~ 277 (707)
+..| .+.|...|.+|+.+|......+. .++..|.+.|.++ -..||..|+.+|+.++.... .
T Consensus 8 ~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 8 VKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3344 55678889999999976532211 2567888888887 48999999999999986521 1
Q ss_pred cchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChH-----HHHHHHHHHHhhcCCCCCC
Q 005234 278 WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYNDNNGNP 352 (707)
Q Consensus 278 ~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~-----ev~~fLldlLkyNDNS~N~ 352 (707)
..|++.|++..++ .+.-++.....+|+.+-..+...-. .+...|+++|+.
T Consensus 85 ~~~i~~l~~ll~~------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~------- 139 (252)
T 4hxt_A 85 AGGVEVLVKLLTS------------------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS------- 139 (252)
T ss_dssp TTHHHHHHHHTTC------------------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-------
T ss_pred CCCHHHHHHHHcC------------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-------
Confidence 1356777776542 1234888888999888632210111 256677788874
Q ss_pred CChhHHHHHHHHHhhcccccccch--HH-HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHH
Q 005234 353 YSDVFWLAALVQSVGELEFGQQSI--LF-LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 415 (707)
Q Consensus 353 ysDs~YvA~lI~ALg~~~~~~~~~--~~-l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~ 415 (707)
+|..-...++.+|+++....... .. ...++..+..++. +-+.-+...|+.+|..++
T Consensus 140 -~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 140 -TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT------STDSEVQKEAARALANIA 198 (252)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC------CCCHHHHHHHHHHHHHHH
Confidence 23445688888998876432211 11 1235666666665 334567777777777775
No 27
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.00 E-value=0.18 Score=57.26 Aligned_cols=220 Identities=12% Similarity=0.063 Sum_probs=122.7
Q ss_pred hCCChHHHHHHHHHHHhCCCChHH----HHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCC
Q 005234 219 KDGDVVAQAQAIAALEALPHLSFN----VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFD 294 (707)
Q Consensus 219 ~DrDVvAQlEAI~aL~~~p~~s~~----~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~ 294 (707)
.++|..-|+-|+.+|......... ....+..++.|+. .-||..|...|.++.++.+--.=+..|++++.+
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d--~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~---- 396 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLD--VSIKRRAMELSFALVNGNNIRGMMKELLYFLDS---- 396 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSC--HHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH----
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCC--hhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh----
Confidence 456667777777777654321111 1245667777764 458889999888888765411113445554443
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhccccccc
Q 005234 295 ENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQ 374 (707)
Q Consensus 295 ~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~ 374 (707)
.++-++.+++.||+.+=.........+...|+++|+..+ .+....++.++..+.....
T Consensus 397 --------------~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~--------~~v~~~~~~~l~~ii~~~p 454 (618)
T 1w63_A 397 --------------CEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAG--------SYVRDDAVPNLIQLITNSV 454 (618)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTG--------GGSCSSHHHHHHHHHHHSC
T ss_pred --------------CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhcc--------chhHHHHHHHHHHHHhcCh
Confidence 124577888899988865544456678888889998642 2222344444444321111
Q ss_pred chHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcC---------CCChHHHHHhhhcccC-CCCcHHHH
Q 005234 375 SILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG---------FISLDQVVKLIKPFRD-FNTIWQVR 444 (707)
Q Consensus 375 ~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g---------~i~~d~~~~ll~~yt~-~g~~~~vR 444 (707)
+ .-..++..+..++.-|. .+..++. +++-.+.+.+..... .+.-..+..++..+.. +.....+|
T Consensus 455 ~--l~~~~v~~L~~~l~~~~---~~~~~~~-~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr 528 (618)
T 1w63_A 455 E--MHAYTVQRLYKAILGDY---SQQPLVQ-VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR 528 (618)
T ss_dssp S--THHHHHHHHHHHHHHCC---SCSHHHH-HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred h--HHHHHHHHHHHHHhccc---ccHHHHH-HHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 1 22345566666665442 3444444 578888887643322 0111223333332221 13567999
Q ss_pred HHHHHHhhhhhhccCChhHHHHHHHHHH
Q 005234 445 VEASRALLDLEFHCNGIDSALSLFIKSV 472 (707)
Q Consensus 445 iaA~~aL~~l~~~~~g~~~al~~~l~~l 472 (707)
..++.+++++..........+.-++...
T Consensus 529 ~~~lta~~Kl~~~~~~~~~~l~~~L~~~ 556 (618)
T 1w63_A 529 GYALTAIMKLSTRFTCTVNRIKKVVSIY 556 (618)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHh
Confidence 9999999999876544333343333333
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.85 E-value=0.11 Score=54.64 Aligned_cols=287 Identities=14% Similarity=0.116 Sum_probs=156.2
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCCCh---------HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccc-----
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD----- 277 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s---------~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~----- 277 (707)
..+.-|+.+.+...|.+|+.+|......+ ..++..|.+.|.++ -..||..|+.+|+.++.....
T Consensus 68 ~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~ 145 (450)
T 2jdq_A 68 RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYV 145 (450)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 34444544448899999999998653211 12567888888876 789999999999999865321
Q ss_pred --cchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCC-----hHHHHHHHHHHHhhcCCCC
Q 005234 278 --WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNG 350 (707)
Q Consensus 278 --~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~-----P~ev~~fLldlLkyNDNS~ 350 (707)
..+++.|++.+++ + .+.-+++....+|+.+-...+.. -..+...|+++|+.
T Consensus 146 ~~~~~i~~L~~~l~~---~--------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~----- 203 (450)
T 2jdq_A 146 LDCNILPPLLQLFSK---Q--------------NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV----- 203 (450)
T ss_dssp HHTTCHHHHHHHTTS---C--------------CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC-----
T ss_pred HHCCCHHHHHHHhcC---C--------------CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc-----
Confidence 1346777776542 0 12348888888988775332111 14577888888863
Q ss_pred CCCChhHHHHHHHHHhhcccccccc-hHH--HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCCh---
Q 005234 351 NPYSDVFWLAALVQSVGELEFGQQS-ILF--LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL--- 424 (707)
Q Consensus 351 N~ysDs~YvA~lI~ALg~~~~~~~~-~~~--l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~--- 424 (707)
+|.--+..++.+|+++...... ... ...++..|..++. +-..-+...|+.+|..+.. +.-..
T Consensus 204 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~---~~~~~~~~ 271 (450)
T 2jdq_A 204 ---SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM------HNDYKVVSPALRAVGNIVT---GDDIQTQV 271 (450)
T ss_dssp ---CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT------CSCHHHHHHHHHHHHHHTT---SCHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC------CCchhHHHHHHHHHHHHhh---CChHHHHH
Confidence 2344557778888876532111 111 1235566666664 2234566778888888751 11000
Q ss_pred ---HHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccC-Ch-----hHHHHHHHHHHhcCccchhhhHHHHHhhhHHHhh
Q 005234 425 ---DQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN-GI-----DSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIK 495 (707)
Q Consensus 425 ---d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~-g~-----~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~ 495 (707)
..+...+..+... ....+|.+|..+|..+..... .. ...+..++..+. ++++..+........+++. .
T Consensus 272 ~~~~~~l~~L~~ll~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~~l~~-~ 348 (450)
T 2jdq_A 272 ILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ-TAEFRTRKEAAWAITNATS-G 348 (450)
T ss_dssp HHTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH-HSCHHHHHHHHHHHHHHHH-H
T ss_pred HHHCccHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHc-C
Confidence 0112222223332 247899999999998864211 00 124556666664 3444443222222222222 1
Q ss_pred CCCCCCCCCCcHHHHHHHHHhccccccccchhhhhHHHHHHHhhc
Q 005234 496 GGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAG 540 (707)
Q Consensus 496 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~d~~lR~~~~~~~~~L~g 540 (707)
+..+....+-...++..|..+.+. .|..+|..+...|..|..
T Consensus 349 ~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 349 GSAEQIKYLVELGCIKPLCDLLTV---MDSKIVQVALNGLENILR 390 (450)
T ss_dssp CCHHHHHHHHHHTCHHHHHHGGGS---SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 100000001011223333333332 378888888877766653
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.68 E-value=0.089 Score=57.39 Aligned_cols=230 Identities=20% Similarity=0.193 Sum_probs=135.4
Q ss_pred CHHHHHHHHhhCCChHHHHHHHHHHHhC---CC-Ch------HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccc-
Q 005234 209 PVQMWINQLEKDGDVVAQAQAIAALEAL---PH-LS------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD- 277 (707)
Q Consensus 209 Pd~Mw~sQLq~DrDVvAQlEAI~aL~~~---p~-~s------~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~- 277 (707)
.-..++..| .+.|...|.+|+.+|.+. .. +. ..++..|...|.++. ...||.+|+.+|+.++.....
T Consensus 75 ~l~~lv~~L-~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 75 SLPAMIGGV-YSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED-FPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp CHHHHHHHH-TSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHH
Confidence 355667777 456999999999999754 11 11 014677888887763 589999999999999874221
Q ss_pred ------cchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChH--------HHHHHHHHHH
Q 005234 278 ------WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR--------EAVEFVLQLL 343 (707)
Q Consensus 278 ------~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~--------ev~~fLldlL 343 (707)
..+++.|++.+++ + +.-|+.....||+.+=.. ++. .+...|+.+|
T Consensus 153 ~~~~~~~g~i~~L~~lL~~----~--------------~~~v~~~a~~aL~~l~~~---~~~~~~~i~~~g~l~~Ll~lL 211 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGS----S--------------SDDVREQAVWALGNVAGD---SPKCRDLVLANGALLPLLAQL 211 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTC----S--------------CHHHHHHHHHHHHHHHHT---CHHHHHHHHHTTCHHHHHHTC
T ss_pred HHHHHhCCcHHHHHHHhcC----C--------------CHHHHHHHHHHHHHHhCC---ChhhHHHHHHCCcHHHHHHHH
Confidence 1256777776542 1 124888888999887432 121 1345566666
Q ss_pred hhcCCCCCCCChhHHHHHHHHHhhcccccc--cchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHH----
Q 005234 344 KYNDNNGNPYSDVFWLAALVQSVGELEFGQ--QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---- 417 (707)
Q Consensus 344 kyNDNS~N~ysDs~YvA~lI~ALg~~~~~~--~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~---- 417 (707)
... +|..-+..++.+|+++.... ........++..|.+++. +-..-|...|+.+|..|...
T Consensus 212 ~~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~aL~~l~~~~~~~ 278 (528)
T 4b8j_A 212 NEH-------TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH------SNDEEVLTDACWALSYLSDGTNDK 278 (528)
T ss_dssp CTT-------CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT------CCCHHHHHHHHHHHHHHTSSCHHH
T ss_pred hcC-------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCCHHH
Confidence 321 34455577777777754331 222234456677777774 22345666677777776410
Q ss_pred -----hcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCCh------hHHHHHHHHHHhcCccchhh
Q 005234 418 -----LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 418 -----~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~------~~al~~~l~~l~~dp~~r~~ 481 (707)
..|. ++.+..++ .. ....+|..|+.+|..+....... ..++..++..+.....+..+
T Consensus 279 ~~~~~~~g~--v~~Lv~lL----~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~ 346 (528)
T 4b8j_A 279 IQAVIEAGV--CPRLVELL----LH-PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIK 346 (528)
T ss_dssp HHHHHHTTC--HHHHHHHT----TC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHcCH--HHHHHHHH----cC-CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHH
Confidence 0111 12223322 22 23689999999999886421110 12466677777533244433
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.55 E-value=0.068 Score=58.54 Aligned_cols=287 Identities=14% Similarity=0.119 Sum_probs=154.2
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc------
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 276 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~------ 276 (707)
.++.-|..+.+...|.+|+.+|......+. .++..|.+.|.++ -..||..|+.+|+.++....
T Consensus 134 ~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~ 211 (530)
T 1wa5_B 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYV 211 (530)
T ss_dssp HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHH
Confidence 344444333388899999999987654211 1356788888876 78999999999999986421
Q ss_pred -ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccC-CCCh----HHHHHHHHHHHhhcCCCC
Q 005234 277 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD-NKSP----REAVEFVLQLLKYNDNNG 350 (707)
Q Consensus 277 -~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~-g~~P----~ev~~fLldlLkyNDNS~ 350 (707)
...+++.|++.+++ + +.-+++....+|+.+=... .... ..+...|+.+|..
T Consensus 212 ~~~~~l~~L~~ll~~----~--------------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~----- 268 (530)
T 1wa5_B 212 LQCNAMEPILGLFNS----N--------------KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS----- 268 (530)
T ss_dssp HHTTCHHHHHHGGGS----C--------------CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-----
T ss_pred HHcCcHHHHHHHhcc----C--------------CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-----
Confidence 12346777766543 1 1247888888888775432 1111 1356778888864
Q ss_pred CCCChhHHHHHHHHHhhcccccccch--HHHH-HHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCCh---
Q 005234 351 NPYSDVFWLAALVQSVGELEFGQQSI--LFLS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL--- 424 (707)
Q Consensus 351 N~ysDs~YvA~lI~ALg~~~~~~~~~--~~l~-~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~--- 424 (707)
+|.--+..++.+|+++....... ...+ .++..|..++. +-..-|...|+.+|..++. +.-..
T Consensus 269 ---~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~------~~~~~v~~~a~~~L~~l~~---~~~~~~~~ 336 (530)
T 1wa5_B 269 ---MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS------HESTLVQTPALRAVGNIVT---GNDLQTQV 336 (530)
T ss_dssp ---CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG------CSCHHHHHHHHHHHHHHTT---SCHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC------CCChhhHHHHHHHHHHHHc---CCHHHHHH
Confidence 23455677888888765331110 1111 34455666664 2234567778888888751 11000
Q ss_pred ---HHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCC-h-----hHHHHHHHHHHhcCccchhhhHHHHHhhhHHHhh
Q 005234 425 ---DQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNG-I-----DSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIK 495 (707)
Q Consensus 425 ---d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g-~-----~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~ 495 (707)
..++..+......+ ...+|.+|..+|..+...... . ..++..++..+. ++++..+.......-+++. .
T Consensus 337 ~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~aL~~l~~-~ 413 (530)
T 1wa5_B 337 VINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE-VAEYKTKKEACWAISNASS-G 413 (530)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH-HSCHHHHHHHHHHHHHHHH-H
T ss_pred HHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHh-c
Confidence 00111222222222 478999999999998642110 0 013445666663 3444443222211222222 2
Q ss_pred CCC--CCCCCCCcHHHHHHHHHhccccccccchhhhhHHHHHHHhhcC
Q 005234 496 GGS--DSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGR 541 (707)
Q Consensus 496 ~~~--~~~~~l~~~~l~~~l~~~~~~~~~~d~~lR~~~~~~~~~L~g~ 541 (707)
+.. +....+-...++..|..+... .|..+|..+...|..|...
T Consensus 414 ~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 414 GLQRPDIIRYLVSQGCIKPLCDLLEI---ADNRIIEVTLDALENILKM 458 (530)
T ss_dssp TTTCTHHHHHHHHTTCHHHHHHHTTT---CCHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHHHHh
Confidence 111 000000011122333333221 4788888888887776643
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.51 E-value=0.12 Score=56.42 Aligned_cols=211 Identities=18% Similarity=0.177 Sum_probs=127.2
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccc---
Q 005234 210 VQMWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD--- 277 (707)
Q Consensus 210 d~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~--- 277 (707)
-..++..|..+.+...|.+|+.+|......+. .++..|...|.++ ...||..|+.+|+.++.....
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHH
Confidence 34455556554448899999999986543211 1567788888876 789999999999999854321
Q ss_pred ----cchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCCh----HHHHHHHHHHHhhcCCC
Q 005234 278 ----WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP----REAVEFVLQLLKYNDNN 349 (707)
Q Consensus 278 ----~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P----~ev~~fLldlLkyNDNS 349 (707)
..+++.|++.+.+ ..+--+++....+|+.+=....... ..+...|+.+|..
T Consensus 197 ~i~~~g~l~~Ll~lL~~-----------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~---- 255 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNE-----------------HTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS---- 255 (528)
T ss_dssp HHHHTTCHHHHHHTCCT-----------------TCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC----
T ss_pred HHHHCCcHHHHHHHHhc-----------------CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC----
Confidence 1245666655421 0123478888888887754321122 2367788888854
Q ss_pred CCCCChhHHHHHHHHHhhcccccccch--HHH-HHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCCh--
Q 005234 350 GNPYSDVFWLAALVQSVGELEFGQQSI--LFL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL-- 424 (707)
Q Consensus 350 ~N~ysDs~YvA~lI~ALg~~~~~~~~~--~~l-~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~-- 424 (707)
.|.--+..++.+|+++....... ... ..++..|..++. +-..-|...|+.+|..++. +.-..
T Consensus 256 ----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~------~~~~~v~~~a~~~L~nl~~---~~~~~~~ 322 (528)
T 4b8j_A 256 ----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL------HPSPSVLIPALRTVGNIVT---GDDAQTQ 322 (528)
T ss_dssp ----CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT------CSCHHHHHHHHHHHHHHTT---SCHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc------CCChhHHHHHHHHHHHHHc---CCHHHHH
Confidence 24556678888998876432211 111 134556666664 2245677788888888752 21000
Q ss_pred ----HHHHHhhhcccCCCCcHHHHHHHHHHhhhhhh
Q 005234 425 ----DQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 456 (707)
Q Consensus 425 ----d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~ 456 (707)
..++..+......+....+|..|..+|..+..
T Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 00112222222333357999999999999864
No 32
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.44 E-value=2.8 Score=50.55 Aligned_cols=209 Identities=13% Similarity=0.127 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHHh--CCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCC
Q 005234 223 VVAQAQAIAALEA--LPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLP 300 (707)
Q Consensus 223 VvAQlEAI~aL~~--~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iP 300 (707)
-.-|.-|+.+|+- .++....+.+.|..+|.|+.. -+|..||.+||.+-....+-.-...|+....+.
T Consensus 451 ~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------- 519 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------- 519 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---------
Confidence 4567778888885 344445688999999998753 678899999998732111112245666654431
Q ss_pred CCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHH--HHHHHHhhcccccccchHH
Q 005234 301 RPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWL--AALVQSVGELEFGQQSILF 378 (707)
Q Consensus 301 kpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~Yv--A~lI~ALg~~~~~~~~~~~ 378 (707)
. .+ -++++.+.|||.+--.+ ++..+-|+++|+.. .|.+-+ +.++.+++.+..+ +.
T Consensus 520 -~------~e-~vrR~aalgLGll~~g~----~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTG--n~-- 576 (963)
T 4ady_A 520 -Q------HG-NITRGLAVGLALINYGR----QELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTG--NN-- 576 (963)
T ss_dssp -S------CH-HHHHHHHHHHHHHTTTC----GGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSC--CH--
T ss_pred -C------cH-HHHHHHHHHHHhhhCCC----hHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCC--CH--
Confidence 0 11 38899999999663211 35666677777753 223333 4555555555544 22
Q ss_pred HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCC-hHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhc
Q 005234 379 LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFH 457 (707)
Q Consensus 379 l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~-~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~ 457 (707)
.+++.|-+.+.-|. ..-|..+|..+|..+. .|... ...++..+.. +++ ..||..|..+|+.+...
T Consensus 577 --~aIq~LL~~~~~d~-----~d~VRraAViaLGlI~---~g~~e~v~rlv~~L~~---~~d-~~VR~gAalALGli~aG 642 (963)
T 4ady_A 577 --SAVKRLLHVAVSDS-----NDDVRRAAVIALGFVL---LRDYTTVPRIVQLLSK---SHN-AHVRCGTAFALGIACAG 642 (963)
T ss_dssp --HHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHT---SSSCSSHHHHTTTGGG---CSC-HHHHHHHHHHHHHHTSS
T ss_pred --HHHHHHHHHhccCC-----cHHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHh---cCC-HHHHHHHHHHHHHhccC
Confidence 23343333333232 2446777888777653 23221 2344444443 333 68999999999987643
Q ss_pred cCChhHHHHHHHHHHhcCccchhh
Q 005234 458 CNGIDSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 458 ~~g~~~al~~~l~~l~~dp~~r~~ 481 (707)
.|...+++ .|..+..|++.-++
T Consensus 643 -n~~~~aid-~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 643 -KGLQSAID-VLDPLTKDPVDFVR 664 (963)
T ss_dssp -SCCHHHHH-HHHHHHTCSSHHHH
T ss_pred -CCcHHHHH-HHHHHccCCCHHHH
Confidence 44456777 66666678887654
No 33
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.20 E-value=1.6 Score=52.71 Aligned_cols=258 Identities=14% Similarity=0.110 Sum_probs=149.4
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHh--CCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhccc--ccccccchHHHHHHH
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEA--LPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA--SEETDWAGLLHLVKF 287 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~--~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a--~~~~~~~Gl~~Lik~ 287 (707)
..+-++-.|.+-+.+.-|..+|+. .++.+..+++.|...+.++. -=.||..||.+||.+. .++ ....|++.
T Consensus 475 e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e----~~~~li~~ 549 (963)
T 4ady_A 475 EALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE----LADDLITK 549 (963)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG----GGHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH----HHHHHHHH
Confidence 334444455555666677777774 35444456677777665433 5689999999999654 333 35677777
Q ss_pred HHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhh
Q 005234 288 YKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVG 367 (707)
Q Consensus 288 Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg 367 (707)
+..- .+..+|.+-+.|++.--...| . ..+.+=||..+.. | .+.+.+.+++-|||
T Consensus 550 L~~~-----------------~dp~vRygaa~alglAyaGTG-n-~~aIq~LL~~~~~-d------~~d~VRraAViaLG 603 (963)
T 4ady_A 550 MLAS-----------------DESLLRYGGAFTIALAYAGTG-N-NSAVKRLLHVAVS-D------SNDDVRRAAVIALG 603 (963)
T ss_dssp HHHC-----------------SCHHHHHHHHHHHHHHTTTSC-C-HHHHHHHHHHHHH-C------SCHHHHHHHHHHHH
T ss_pred HHhC-----------------CCHHHHHHHHHHHHHHhcCCC-C-HHHHHHHHHHhcc-C------CcHHHHHHHHHHHH
Confidence 7641 123477776666664333333 2 4555544444442 2 23556788999999
Q ss_pred cccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHH
Q 005234 368 ELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEA 447 (707)
Q Consensus 368 ~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA 447 (707)
-+.++.... . .|.+ +.+.-+++..|..++.-+|..+. +|... ..+.+.+.+++. +.-..||..|
T Consensus 604 lI~~g~~e~--v-------~rlv--~~L~~~~d~~VR~gAalALGli~---aGn~~-~~aid~L~~L~~-D~d~~Vrq~A 667 (963)
T 4ady_A 604 FVLLRDYTT--V-------PRIV--QLLSKSHNAHVRCGTAFALGIAC---AGKGL-QSAIDVLDPLTK-DPVDFVRQAA 667 (963)
T ss_dssp HHTSSSCSS--H-------HHHT--TTGGGCSCHHHHHHHHHHHHHHT---SSSCC-HHHHHHHHHHHT-CSSHHHHHHH
T ss_pred hhccCCHHH--H-------HHHH--HHHHhcCCHHHHHHHHHHHHHhc---cCCCc-HHHHHHHHHHcc-CCCHHHHHHH
Confidence 876653321 1 1222 12233788889999988877764 44433 445566666554 4567899999
Q ss_pred HHHhhhhhhccCC-----hhHHHHHHHHHHhc-Cccchhh--hHHHHHhhhH----HHhhCCCCCCCCCCcHHHHHHHHH
Q 005234 448 SRALLDLEFHCNG-----IDSALSLFIKSVEE-EPSLRGQ--VKLGIHAMRI----CQIKGGSDSNHEVDTVTLVALLNL 515 (707)
Q Consensus 448 ~~aL~~l~~~~~g-----~~~al~~~l~~l~~-dp~~r~~--~~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~l~~ 515 (707)
+.+|..++..... ....+..++.++.. +.++..+ +.++.-.+.+ +++.---....-++...++.++..
T Consensus 668 i~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~~Gl~~f 747 (963)
T 4ady_A 668 MIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMF 747 (963)
T ss_dssp HHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCCCHHHHHHHHHH
Confidence 9999998765322 23446667777642 4444333 2222212211 111110012445788888888776
Q ss_pred h
Q 005234 516 L 516 (707)
Q Consensus 516 ~ 516 (707)
.
T Consensus 748 ~ 748 (963)
T 4ady_A 748 S 748 (963)
T ss_dssp T
T ss_pred H
Confidence 4
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.62 E-value=0.34 Score=45.66 Aligned_cols=136 Identities=20% Similarity=0.165 Sum_probs=90.5
Q ss_pred CCHHHHHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc--
Q 005234 208 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 276 (707)
Q Consensus 208 QPd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~-- 276 (707)
.+.+.....|-++.|...|.+|+.+|......+. .++..|.+.|.++ -..||..|+.+|+.++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHH
Confidence 4567788888899999999999999986532111 1457788888877 68999999999999974321
Q ss_pred -----ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCC-----hHHHHHHHHHHHhhc
Q 005234 277 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYN 346 (707)
Q Consensus 277 -----~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~-----P~ev~~fLldlLkyN 346 (707)
...|++.|++..++ .+..+++....||+.+=..+... -..+...|+++|+.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~- 149 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSS------------------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS- 149 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTC------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-
T ss_pred HHHHHHCCCHHHHHHHHcC------------------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-
Confidence 12357788777643 12358888888988875321000 01245677777764
Q ss_pred CCCCCCCChhHHHHHHHHHhhcccc
Q 005234 347 DNNGNPYSDVFWLAALVQSVGELEF 371 (707)
Q Consensus 347 DNS~N~ysDs~YvA~lI~ALg~~~~ 371 (707)
+|.--...++.+|+++..
T Consensus 150 -------~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 150 -------PNEQILQEALWALSNIAS 167 (210)
T ss_dssp -------SCHHHHHHHHHHHHHHHT
T ss_pred -------CCHHHHHHHHHHHHHHHc
Confidence 234455777788887654
No 35
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.58 E-value=0.73 Score=48.22 Aligned_cols=229 Identities=18% Similarity=0.149 Sum_probs=133.2
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhC----CCCh------H-HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc----
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEAL----PHLS------F-NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET---- 276 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~----p~~s------~-~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~---- 276 (707)
..+..| ++.|...|..|+..|.+. ..+. . .++..|.+.|.++. -..||.+|+.+|+.++....
T Consensus 24 ~l~~~l-~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 24 DMIEMI-FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp HHHHHH-HSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 345566 567999999999998763 1110 0 35677888887663 68999999999999876321
Q ss_pred ---ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCCh-----HHHHHHHHHHHhhcCC
Q 005234 277 ---DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP-----REAVEFVLQLLKYNDN 348 (707)
Q Consensus 277 ---~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P-----~ev~~fLldlLkyNDN 348 (707)
...+++.|++..++ .+.-++.....+|+.+=..+..+- ..+...|+.+|+..
T Consensus 102 ~~~~~~~i~~L~~lL~~------------------~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-- 161 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSS------------------EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-- 161 (450)
T ss_dssp HHHHTTHHHHHHHHTTC------------------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC--
T ss_pred HHHhCCCHHHHHHHHcC------------------CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC--
Confidence 11245666665432 123488888888887753220000 12466777777631
Q ss_pred CCCCCChhHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHH--------
Q 005234 349 NGNPYSDVFWLAALVQSVGELEFGQ---QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK-------- 417 (707)
Q Consensus 349 S~N~ysDs~YvA~lI~ALg~~~~~~---~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~-------- 417 (707)
.+.-.+..++.+|+++.... ........++.-|.++++ +-..-+...++.+|..++..
T Consensus 162 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 230 (450)
T 2jdq_A 162 -----NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF------VSDTDVLADACWALSYLSDGPNDKIQAV 230 (450)
T ss_dssp -----CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT------CCCHHHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc------cCCHHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 23455677788888765321 111223445566666664 22345566677777776410
Q ss_pred -hcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCCh------hHHHHHHHHHHhcCccchhh
Q 005234 418 -LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 418 -~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~------~~al~~~l~~l~~dp~~r~~ 481 (707)
..|. ++.+..++. .....+|..|.++|..+....... ..++..++..+. ++++..+
T Consensus 231 ~~~~~--i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~vr 293 (450)
T 2jdq_A 231 IDAGV--CRRLVELLM-----HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS-SPKESIK 293 (450)
T ss_dssp HHTTT--HHHHHHHTT-----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT-CSSHHHH
T ss_pred HHcCc--HHHHHHHHC-----CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc-CCCHHHH
Confidence 0111 223333332 234789999999999886432111 025666666663 4555444
No 36
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.58 E-value=1.3 Score=48.61 Aligned_cols=236 Identities=14% Similarity=0.186 Sum_probs=129.8
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc------
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 276 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~------ 276 (707)
.++.-|+.+.+..-|.+|..+|....+.+. -++..|.+.|.++ .-.||..|+.+|+.++.+..
T Consensus 104 ~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v 181 (510)
T 3ul1_B 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLV 181 (510)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344556667778899999999987533211 1456788888877 78999999999999986432
Q ss_pred -ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccc-cCCCCh----HHHHHHHHHHHhhcCCCC
Q 005234 277 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRA-ADNKSP----REAVEFVLQLLKYNDNNG 350 (707)
Q Consensus 277 -~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd-~~g~~P----~ev~~fLldlLkyNDNS~ 350 (707)
...|+..|+...+. + +.+... .-+++....+++.+-. .+...+ ..+...|..+|+..
T Consensus 182 ~~~G~i~~Ll~lL~~----~--------~~~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---- 244 (510)
T 3ul1_B 182 IKHGAIDPLLALLAV----P--------DLSTLA-CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---- 244 (510)
T ss_dssp HHTTCHHHHHHHTCS----S--------CGGGSC-HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS----
T ss_pred HHcCChHHHHHHHHh----c--------cchhhh-HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC----
Confidence 12346777766542 1 111111 2244555566665532 222222 23556677777642
Q ss_pred CCCChhHHHHHHHHHhhcccccccch-HH--HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCCh-H-
Q 005234 351 NPYSDVFWLAALVQSVGELEFGQQSI-LF--LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISL-D- 425 (707)
Q Consensus 351 N~ysDs~YvA~lI~ALg~~~~~~~~~-~~--l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~-d- 425 (707)
|.--+..++.+|+++....... .. ...++..|..++. +-..-+...|+.+|..+. .+.-.. .
T Consensus 245 ----~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~------~~~~~v~~~al~aL~nl~---~~~~~~~~~ 311 (510)
T 3ul1_B 245 ----DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG------ATELPIVTPALRAIGNIV---TGTDEQTQK 311 (510)
T ss_dssp ----CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT------CSCHHHHHHHHHHHHHHT---TSCHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc------CCChhhhhHHHHHHHHhh---cCCHHHHHH
Confidence 3445577788888765332211 01 1124455666665 333446667777777763 121000 0
Q ss_pred ----HHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCCh------hHHHHHHHHHHhcCccchhh
Q 005234 426 ----QVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 426 ----~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~------~~al~~~l~~l~~dp~~r~~ 481 (707)
.++..+..... .....+|..|..+|.-+....... ..++..++..+ .++++..+
T Consensus 312 i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~ 375 (510)
T 3ul1_B 312 VIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQ 375 (510)
T ss_dssp HHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HSSCHHHH
T ss_pred HhhccchHHHHHHhc-CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHH-cCCCHHHH
Confidence 01111222222 234689999999999886431111 12455566666 34444444
No 37
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.44 E-value=0.72 Score=50.84 Aligned_cols=233 Identities=14% Similarity=0.179 Sum_probs=129.0
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc------
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 276 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~------ 276 (707)
.++.-|..+.+..-|.+|..+|....+.+. .++..|...|.++ .-.||..|+.+|+.++.+..
T Consensus 123 ~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i 200 (529)
T 3tpo_A 123 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLV 200 (529)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 455667677788999999999986533211 1356788877766 78999999999999986432
Q ss_pred -ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhccc-ccCCCCh----HHHHHHHHHHHhhcCCCC
Q 005234 277 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVR-AADNKSP----REAVEFVLQLLKYNDNNG 350 (707)
Q Consensus 277 -~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vR-d~~g~~P----~ev~~fLldlLkyNDNS~ 350 (707)
...|++.|+..... +. -+.... -+++.+..+++.+- +.+...+ ..+...|..+|..+
T Consensus 201 ~~~g~i~~Ll~lL~~----~~--------~~~~~~-~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---- 263 (529)
T 3tpo_A 201 IKHGAIDPLLALLAV----PD--------LSTLAC-GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---- 263 (529)
T ss_dssp HHTTCHHHHHHTTCS----SC--------GGGSCH-HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS----
T ss_pred HHcCCcHHHHHHHhc----cc--------hhHhHH-HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC----
Confidence 22346667665432 10 011112 24455556666553 2222222 33566778888643
Q ss_pred CCCChhHHHHHHHHHhhcccccccch-HH--HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHH---------Hh
Q 005234 351 NPYSDVFWLAALVQSVGELEFGQQSI-LF--LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---------KL 418 (707)
Q Consensus 351 N~ysDs~YvA~lI~ALg~~~~~~~~~-~~--l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~---------~~ 418 (707)
|.--+..++.||+.+....... .. ...++..|..++. +-..-|...|+.+|..+.. ..
T Consensus 264 ----~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~ 333 (529)
T 3tpo_A 264 ----DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG------ATELPIVTPALRAIGNIVTGTDEQTQKVID 333 (529)
T ss_dssp ----CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc------CCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence 3445577788888765332111 01 1124455666664 3344566677777777631 01
Q ss_pred cCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCCh------hHHHHHHHHHHhcCccchhh
Q 005234 419 SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 419 ~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~------~~al~~~l~~l~~dp~~r~~ 481 (707)
.|.++ .+..++ . .....+|..|..+|.-+....... ..++..++..+ .++++..+
T Consensus 334 ~g~l~--~L~~LL----~-~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~ 394 (529)
T 3tpo_A 334 AGALA--VFPSLL----T-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQ 394 (529)
T ss_dssp TTGGG--GHHHHT----T-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHH-HSSCHHHH
T ss_pred cccHH--HHHHHH----c-CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHh-cCCCHHHH
Confidence 12221 122222 2 234679999999999876431110 12355566666 34444443
No 38
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=94.39 E-value=1.6 Score=47.58 Aligned_cols=230 Identities=17% Similarity=0.161 Sum_probs=137.3
Q ss_pred CHHHHHHHHhhCCChHHHHHHHHHHHhCCC----Ch------HHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc--
Q 005234 209 PVQMWINQLEKDGDVVAQAQAIAALEALPH----LS------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 276 (707)
Q Consensus 209 Pd~Mw~sQLq~DrDVvAQlEAI~aL~~~p~----~s------~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~-- 276 (707)
.-..++..|+ +.|...|.+|+.+|.+.-+ +. ..++..|.+.|.++. -+.||.+||.+|+.++....
T Consensus 88 ~i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 88 ELPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CHHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHH
Confidence 3555666664 5689999999999986421 11 124677888887752 68999999999999986321
Q ss_pred -----ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChH-----HHHHHHHHHHhhc
Q 005234 277 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYN 346 (707)
Q Consensus 277 -----~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~-----ev~~fLldlLkyN 346 (707)
...+++.|++..++. +.-|+.....||+.+=..+..+.. .+...|+.+|..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~------------------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~- 226 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTG------------------SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS- 226 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-
T ss_pred HHHHHHCCCHHHHHHHHcCC------------------CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-
Confidence 123578888887751 234888888888887532100111 245667777764
Q ss_pred CCCCCCCChhHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHh-----
Q 005234 347 DNNGNPYSDVFWLAALVQSVGELEFGQ---QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKL----- 418 (707)
Q Consensus 347 DNS~N~ysDs~YvA~lI~ALg~~~~~~---~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~----- 418 (707)
.|...+..++.+|+++.... ........++..|.+++. +-..-|...++.+|..|+...
T Consensus 227 -------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~L~~~~~~~~~ 293 (530)
T 1wa5_B 227 -------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY------SMDTETLVDACWAISYLSDGPQEAIQ 293 (530)
T ss_dssp -------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT------CCCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred -------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 33555677888888765332 122233456667777765 223456666777777775210
Q ss_pred ----cCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCCh------hHHHHHHHHHHhcCccchh
Q 005234 419 ----SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEEEPSLRG 480 (707)
Q Consensus 419 ----~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~------~~al~~~l~~l~~dp~~r~ 480 (707)
.|.+ +.+..++ .. ....+|..|+++|..+....... ..++..++..+. ++.+..
T Consensus 294 ~~~~~~~v--~~Lv~lL----~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v 357 (530)
T 1wa5_B 294 AVIDVRIP--KRLVELL----SH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENI 357 (530)
T ss_dssp HHHHTTCH--HHHHHGG----GC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHH
T ss_pred HHHhcCcH--HHHHHHH----CC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc-CCCHHH
Confidence 0211 2233333 22 34789999999999886431110 124556666663 444433
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=94.21 E-value=1.3 Score=50.37 Aligned_cols=288 Identities=12% Similarity=0.092 Sum_probs=154.3
Q ss_pred hCCChHHHHHHHHHHHhCCCCh--HHHHHHHHHHh--cCCCccHHHHHHHHHHHhcccccccccc---h-HHHHHHHHHh
Q 005234 219 KDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFL--SDSKAFWRVRIEAAYALANTASEETDWA---G-LLHLVKFYKS 290 (707)
Q Consensus 219 ~DrDVvAQlEAI~aL~~~p~~s--~~~v~aL~rtL--~D~ryFygVR~eAA~ALak~a~~~~~~~---G-l~~Lik~Fk~ 290 (707)
.|++..-|--|+++|+....+. ......+.++| .|. -.-||..||.++.++....++.. + +..|.++.
T Consensus 121 ~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL-- 196 (621)
T 2vgl_A 121 ASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLL-- 196 (621)
T ss_dssp HSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHh--
Confidence 3677777888888888766542 12334456667 555 67788999999888764322110 1 23333322
Q ss_pred ccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCC----ChHHHHHHHHHHHhhcCCCCCC-----CChhHHHHH
Q 005234 291 RRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----SPREAVEFVLQLLKYNDNNGNP-----YSDVFWLAA 361 (707)
Q Consensus 291 ~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~----~P~ev~~fLldlLkyNDNS~N~-----ysDs~YvA~ 361 (707)
.+ .+..|+.+...++..+...++. .-+-+.+.|-.++..++.+.-. ..|.|-...
T Consensus 197 --~d--------------~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 197 --ND--------------QHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp --TC--------------SCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred --CC--------------CCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 22 2346888888898888654421 1222444455555433221011 125666789
Q ss_pred HHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCC-----Cc---ccHhHHHHHHHHHHHHHHhcCCCC-hHHHHHhhh
Q 005234 362 LVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMP-----SY---NGILTISCIRTLTQIALKLSGFIS-LDQVVKLIK 432 (707)
Q Consensus 362 lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~P-----SY---~~vVTvacL~~L~~L~~~~~g~i~-~d~~~~ll~ 432 (707)
+++.|+..... ++....+.+.+-|.++++.=.-.| .+ .+.|-..|++++..+. ...+ ...+...+.
T Consensus 261 il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~~~~~~L~ 335 (621)
T 2vgl_A 261 LLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLVRACNQLG 335 (621)
T ss_dssp HHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHH
Confidence 99999986532 222233344455555553200022 12 2367778888877752 1111 112223333
Q ss_pred cccCCCCcHHHHHHHHHHhhhhhhccCChh---HHHHHHHHHHhcCccchhhhHHHHHhhhHHHhhCCCCCCCCCCcHHH
Q 005234 433 PFRDFNTIWQVRVEASRALLDLEFHCNGID---SALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTL 509 (707)
Q Consensus 433 ~yt~~g~~~~vRiaA~~aL~~l~~~~~g~~---~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 509 (707)
.+.. .....+|..|+++|..+....+..+ .-...++..+..|++...+ ..++.++..-.... +-..+
T Consensus 336 ~~L~-~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir----~~aL~lL~~l~~~~-----Nv~~I 405 (621)
T 2vgl_A 336 QFLQ-HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVR----QRAVDLLYAMCDRS-----NAQQI 405 (621)
T ss_dssp HHSS-CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHH----HHHHHHHHHHCCHH-----HHHHH
T ss_pred HHhc-CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHH----HHHHHHHHHHcChh-----hHHHH
Confidence 3333 2346899999999999875432111 1233455555436665433 22333333222111 23455
Q ss_pred HHHHHHhccccccccchhhhhHHHHHHHhhcCCCc
Q 005234 510 VALLNLLESRIAFNNVFLRHHLFGILQILAGRAPT 544 (707)
Q Consensus 510 ~~~l~~~~~~~~~~d~~lR~~~~~~~~~L~g~~~~ 544 (707)
+..|..+..+ .|.-.|..++..+-.|+-+|+.
T Consensus 406 v~eL~~yl~~---~d~~~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 406 VAEMLSYLET---ADYSIREEIVLKVAILAEKYAV 437 (621)
T ss_dssp HHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHh---cCHHHHHHHHHHHHHHHHhcCC
Confidence 5544444432 4778888888888888877763
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.92 E-value=1.1 Score=49.32 Aligned_cols=212 Identities=19% Similarity=0.231 Sum_probs=121.8
Q ss_pred CHHHHHHHHhhCCChHHHHHHHHHHHhC----CCChH------HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc--
Q 005234 209 PVQMWINQLEKDGDVVAQAQAIAALEAL----PHLSF------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 276 (707)
Q Consensus 209 Pd~Mw~sQLq~DrDVvAQlEAI~aL~~~----p~~s~------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~-- 276 (707)
.-...+.++ +..|...|++|+.++.+. ..+.. -++..|.+.|.... ...++.+||.+|+.++....
T Consensus 77 ~l~~lv~~l-~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~-~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 77 SVEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp CHHHHHHHH-TSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence 345567777 668999999999988652 22111 13567888886443 68999999999999986432
Q ss_pred -----ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHH-----HHHHHHHHHhhc
Q 005234 277 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPRE-----AVEFVLQLLKYN 346 (707)
Q Consensus 277 -----~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~e-----v~~fLldlLkyN 346 (707)
...+++.|++...+ .+.-++.....||+.+=..+-.+-.. +..-|+.+|...
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s------------------~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~ 216 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLAS------------------PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVP 216 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTC------------------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSS
T ss_pred HHHHHHCCCHHHHHHHHcC------------------CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhcc
Confidence 11246777776543 12348888889998874221001111 345567777643
Q ss_pred CCCCCCCChhHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHH-------
Q 005234 347 DNNGNPYSDVFWLAALVQSVGELEFGQ---QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL------- 416 (707)
Q Consensus 347 DNS~N~ysDs~YvA~lI~ALg~~~~~~---~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~------- 416 (707)
+.+. ...-.+..+..+|+++..+. ........++.-|.+++. +-..-|...+..+|..+..
T Consensus 217 ~~~~---~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~------~~~~~v~~~a~~aL~~l~~~~~~~~~ 287 (529)
T 3tpo_A 217 DLST---LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH------HNDPEVLADSCWAISYLTDGPNERIE 287 (529)
T ss_dssp CGGG---SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT------SSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred chhH---hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc------CCcHHHHHHHHHHHHHhhhhhhhhHH
Confidence 3221 12334556666676653321 222334567777777775 2233344455566666541
Q ss_pred --HhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhh
Q 005234 417 --KLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 456 (707)
Q Consensus 417 --~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~ 456 (707)
...|.+ ..+..++. .....++..|.++|.-+..
T Consensus 288 ~v~~~g~i--~~Lv~lL~-----~~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 288 MVVKKGVV--PQLVKLLG-----ATELPIVTPALRAIGNIVT 322 (529)
T ss_dssp HHHTTTCH--HHHHHHHT-----CSCHHHHHHHHHHHHHHTT
T ss_pred HHHhccch--HHHHHHhc-----CCChhHHHHHHHHHHHHHc
Confidence 012222 22333332 2346899999999988753
No 41
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.59 E-value=5.8 Score=45.14 Aligned_cols=241 Identities=11% Similarity=0.042 Sum_probs=123.3
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhCCCCh---------HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccc----cc
Q 005234 213 WINQLEKDGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD----WA 279 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~p~~s---------~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~----~~ 279 (707)
++.++-.+.+...|..|+.+|+...... ...+..|.+.+.|+ ...||..|+.+|+.++..-.. ..
T Consensus 373 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~ 450 (861)
T 2bpt_A 373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ--SLQVKETTAWCIGRIADSVAESIDPQQ 450 (861)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHGGGSCTTT
T ss_pred HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 4445556788888999999998764321 12355677778787 799999999999988743110 11
Q ss_pred hH----HHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCC--------CChHHHHHHHHHHHhhcC
Q 005234 280 GL----LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN--------KSPREAVEFVLQLLKYND 347 (707)
Q Consensus 280 Gl----~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g--------~~P~ev~~fLldlLkyND 347 (707)
-+ +.|++.+++ . | .|+.+...|++.+=..-+ ..-+.+...|+.+++..|
T Consensus 451 ~~~~~l~~l~~~l~~-------~-~-----------~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d 511 (861)
T 2bpt_A 451 HLPGVVQACLIGLQD-------H-P-----------KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID 511 (861)
T ss_dssp THHHHHHHHHHHHTS-------C-H-----------HHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHhcc-------C-h-----------HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcC
Confidence 12 334443321 1 2 377777777765432111 123567778888887433
Q ss_pred CCCCCCChhHHHHHHHHHhhcccc--cccchHHHHHHHHHHHHHHh----cCcCCCC-----cccHhHHHHHHHHHHHHH
Q 005234 348 NNGNPYSDVFWLAALVQSVGELEF--GQQSILFLSSLLKRIDRLLQ----FDRLMPS-----YNGILTISCIRTLTQIAL 416 (707)
Q Consensus 348 NS~N~ysDs~YvA~lI~ALg~~~~--~~~~~~~l~~vl~eI~R~l~----lD~~~PS-----Y~~vVTvacL~~L~~L~~ 416 (707)
+ +.....+++++|+.+.- +.....++..++..+-..+. ++.-+-+ -..-+...++.++..+..
T Consensus 512 ~------~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~ 585 (861)
T 2bpt_A 512 N------EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIR 585 (861)
T ss_dssp C------GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c------chHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 23345667777776532 11222334443333333332 2110000 112234556667666653
Q ss_pred HhcC-CCC-hHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCC-h----hHHHHHHHHHHhcCccchhh
Q 005234 417 KLSG-FIS-LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNG-I----DSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 417 ~~~g-~i~-~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g-~----~~al~~~l~~l~~dp~~r~~ 481 (707)
.... ..| .+.++..+...........+|..|+.++..+....+. . ...+..++..+ .++.+..+
T Consensus 586 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~vr 656 (861)
T 2bpt_A 586 KSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVS 656 (861)
T ss_dssp HCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHH
T ss_pred HhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccHHHH
Confidence 2221 122 1233332222222222116899999988877543221 1 23455566666 34444433
No 42
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.36 E-value=0.84 Score=55.28 Aligned_cols=229 Identities=12% Similarity=0.073 Sum_probs=128.6
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhC-CC--------ChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHH
Q 005234 213 WINQLEKDGDVVAQAQAIAALEAL-PH--------LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLH 283 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~-p~--------~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~ 283 (707)
+..++ .++|--.|..|...|.+. .. ....++..|.+.|.|+ -|.||..|+.+|+.+...-.. ..+..
T Consensus 11 lL~~l-~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~--~~~vR~~A~~~L~~l~~~~~~-~~~~~ 86 (1230)
T 1u6g_C 11 LLEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSKVKE-YQVET 86 (1230)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTSCH-HHHHH
T ss_pred HHHhc-CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhCCH-HHHHH
Confidence 44444 467888888888777642 11 1124567788888876 799999999999988753211 11233
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCC----------ChHHHHHHHHHHHhhcCCCCCCC
Q 005234 284 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----------SPREAVEFVLQLLKYNDNNGNPY 353 (707)
Q Consensus 284 Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~----------~P~ev~~fLldlLkyNDNS~N~y 353 (707)
++...-....+++ + .+|.+...+|+.+=..-+. ..+++..+|++.+.. +
T Consensus 87 i~~~Ll~~l~d~~---~-----------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~---~---- 145 (1230)
T 1u6g_C 87 IVDTLCTNMLSDK---E-----------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK---Q---- 145 (1230)
T ss_dssp HHHHHHHHTTCSS---S-----------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC---C----
T ss_pred HHHHHHHHhcCCc---H-----------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC---C----
Confidence 3333222111211 1 2677777777766543332 256788888887752 1
Q ss_pred ChhHHHHHHHHHhhccc--ccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhh
Q 005234 354 SDVFWLAALVQSVGELE--FGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLI 431 (707)
Q Consensus 354 sDs~YvA~lI~ALg~~~--~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll 431 (707)
.+.-.+..++.+|+.+. ++..-..+...++..+-..+. +-+..|..+++.++..++.. .+.--++.+...+
T Consensus 146 ~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~------~~~~~vR~~a~~al~~l~~~-~~~~~~~~~l~~l 218 (1230)
T 1u6g_C 146 EDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT------SPRLAVRKRTIIALGHLVMS-CGNIVFVDLIEHL 218 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG------CSSHHHHHHHHHHHHHHTTT-C----CTTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 12345577788887643 121111245666666666664 12346888899999887532 1110012222222
Q ss_pred hcccCCCCcHHHHHHHHHHhhhhhhccC-----ChhHHHHHHHHHHh
Q 005234 432 KPFRDFNTIWQVRVEASRALLDLEFHCN-----GIDSALSLFIKSVE 473 (707)
Q Consensus 432 ~~yt~~g~~~~vRiaA~~aL~~l~~~~~-----g~~~al~~~l~~l~ 473 (707)
..+........+|.+|+++|..+....+ -+...+..++..+.
T Consensus 219 ~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 219 LSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 265 (1230)
T ss_dssp HHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 2221111224689999999998864321 12456777777773
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.28 E-value=2.1 Score=46.98 Aligned_cols=208 Identities=20% Similarity=0.240 Sum_probs=123.7
Q ss_pred CHHHHHHHHhhCCChHHHHHHHHHHHhC----CCCh-HH-----HHHHHHHHhcCCCccHHHHHHHHHHHhccccccc--
Q 005234 209 PVQMWINQLEKDGDVVAQAQAIAALEAL----PHLS-FN-----VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 276 (707)
Q Consensus 209 Pd~Mw~sQLq~DrDVvAQlEAI~aL~~~----p~~s-~~-----~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~-- 276 (707)
.-...+..| +..|...|++|+.++.+. ..++ .. ++..|.+.|.... .-.|+.+||.+|+.+++...
T Consensus 58 ~i~~~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~-~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 58 SVEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp CHHHHHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHTSCHHH
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHH
Confidence 456678888 678999999999888753 2221 11 3567888886543 67899999999999975322
Q ss_pred -----ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChH---H-----HHHHHHHHH
Q 005234 277 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR---E-----AVEFVLQLL 343 (707)
Q Consensus 277 -----~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~---e-----v~~fLldlL 343 (707)
+-.|++.|++..++ .+.-|++....||+.+=. + +|. . +...|+.+|
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s------------------~~~~v~e~A~~aL~nLa~-d--~~~~r~~v~~~G~i~~Ll~lL 194 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLAS------------------PHAHISEQAVWALGNIAG-D--GSAFRDLVIKHGAIDPLLALL 194 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTC------------------SCHHHHHHHHHHHHHHHT-T--CHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcC------------------CCHHHHHHHHHHHHHHHh-C--CHHHHHHHHHcCChHHHHHHH
Confidence 12357888877643 112488888899988732 1 222 1 345677788
Q ss_pred hhcCCCCCCCChhHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHH----
Q 005234 344 KYNDNNGNPYSDVFWLAALVQSVGELEFGQ---QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---- 416 (707)
Q Consensus 344 kyNDNS~N~ysDs~YvA~lI~ALg~~~~~~---~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~---- 416 (707)
...|.+ -.....+..+..+|+++..+. ........++.-|.+++. +-..-|...+..+|..|+.
T Consensus 195 ~~~~~~---~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~------~~~~~v~~~A~~aL~~L~~~~~~ 265 (510)
T 3ul1_B 195 AVPDLS---TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH------HNDPEVLADSCWAISYLTDGPNE 265 (510)
T ss_dssp CSSCGG---GSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT------CSCHHHHHHHHHHHHHHTSSCHH
T ss_pred Hhccch---hhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh------cCCHHHHHHHHHHHHHHhhchhh
Confidence 654322 112334556666776654321 222334566677777775 2233344455566666541
Q ss_pred -----HhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhh
Q 005234 417 -----KLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLE 455 (707)
Q Consensus 417 -----~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~ 455 (707)
...|.+ ..+..++. . ....++..|.++|.-+.
T Consensus 266 ~~~~i~~~g~i--~~Lv~lL~----~-~~~~v~~~al~aL~nl~ 302 (510)
T 3ul1_B 266 RIEMVVKKGVV--PQLVKLLG----A-TELPIVTPALRAIGNIV 302 (510)
T ss_dssp HHHHHHTTTCH--HHHHHHHT----C-SCHHHHHHHHHHHHHHT
T ss_pred hHHHHHhcccc--hhhhhhhc----C-CChhhhhHHHHHHHHhh
Confidence 011211 12333332 1 34679999999998875
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.19 E-value=6.7 Score=40.78 Aligned_cols=251 Identities=13% Similarity=0.009 Sum_probs=131.9
Q ss_pred HHhhCC--ChHHHHHHHHHHHhCCC---------ChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccc---c-ccccch
Q 005234 216 QLEKDG--DVVAQAQAIAALEALPH---------LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS---E-ETDWAG 280 (707)
Q Consensus 216 QLq~Dr--DVvAQlEAI~aL~~~p~---------~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~---~-~~~~~G 280 (707)
+.-.+. |...+..|+..|..... ........|...+.|+..-..||.+|+.+|+.+.. + ...|.-
T Consensus 135 ~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 214 (462)
T 1ibr_B 135 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214 (462)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 333556 88888888877764321 11235677888888774358999999999998532 1 111211
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCC----CChH-HHHHHHHHHHhhcCCCCCCCCh
Q 005234 281 LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN----KSPR-EAVEFVLQLLKYNDNNGNPYSD 355 (707)
Q Consensus 281 l~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g----~~P~-ev~~fLldlLkyNDNS~N~ysD 355 (707)
...++....+..-+ .+.-+++++..+|+.+-...+ ..-. .+..+++..++. .|
T Consensus 215 ~~~l~~~l~~~~~~--------------~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~ 272 (462)
T 1ibr_B 215 RHFIMQVVCEATQC--------------PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS--------DI 272 (462)
T ss_dssp HHHHHHHHHHHTTC--------------SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC--------SS
T ss_pred HHHHHHHHHHhcCC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------Cc
Confidence 12334443331100 123478888888876653321 1222 677777777753 22
Q ss_pred hHHHHHHHHHhhccccc-------------------ccch----HHHHHHHHHHHHHHhc-C--cCCCCcccHhHHHHHH
Q 005234 356 VFWLAALVQSVGELEFG-------------------QQSI----LFLSSLLKRIDRLLQF-D--RLMPSYNGILTISCIR 409 (707)
Q Consensus 356 s~YvA~lI~ALg~~~~~-------------------~~~~----~~l~~vl~eI~R~l~l-D--~~~PSY~~vVTvacL~ 409 (707)
.-.+..+++.++.+.-. .... .++..++..+-+.+.- | ..-.+| .+..+|..
T Consensus 273 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~--~~r~~a~~ 350 (462)
T 1ibr_B 273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW--NPCKAAGV 350 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC--SHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccc--hHHHHHHH
Confidence 33444555544432100 0000 1223444444444431 1 111223 45667777
Q ss_pred HHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccC------ChhHHHHHHHHHHhcCccchhhhH
Q 005234 410 TLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN------GIDSALSLFIKSVEEEPSLRGQVK 483 (707)
Q Consensus 410 ~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~------g~~~al~~~l~~l~~dp~~r~~~~ 483 (707)
+|..++... |.--++.+...+..+.. ...+.+|.+|+.+|..++.... .....+..++..+ .||.+++|..
T Consensus 351 ~L~~l~~~~-~~~~~~~~~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l-~d~~~~Vr~~ 427 (462)
T 1ibr_B 351 CLMLLATCC-EDDIVPHVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-KDPSVVVRDT 427 (462)
T ss_dssp HHHHHHHHT-TTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG-GCSCHHHHHH
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-cCCCHHHHHH
Confidence 777776432 32222334444444333 3468999999999999864322 1134566566666 6777776643
Q ss_pred HHHHhhhHHH
Q 005234 484 LGIHAMRICQ 493 (707)
Q Consensus 484 ~~~~~~~~~~ 493 (707)
.....-+++.
T Consensus 428 a~~~l~~~~~ 437 (462)
T 1ibr_B 428 AAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333334443
No 45
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.50 E-value=9.3 Score=43.53 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=45.0
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhCCCCh---------HHHHHHHHHHhcCCCccHHHHHHHHHHHhccccc
Q 005234 213 WINQLEKDGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 274 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~p~~s---------~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~ 274 (707)
++.+.-.|++...|..|+.+|+...... ...+..|...+.|+ .+.||..|+.+|+++...
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~--~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHh
Confidence 4445557889999999999998754321 12356677888887 699999999999998753
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=92.46 E-value=8.9 Score=44.39 Aligned_cols=292 Identities=14% Similarity=0.056 Sum_probs=146.9
Q ss_pred HHHHhhCCChHHHHHHHHHHHhC----CCC---------hHHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccccc--
Q 005234 214 INQLEKDGDVVAQAQAIAALEAL----PHL---------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW-- 278 (707)
Q Consensus 214 ~sQLq~DrDVvAQlEAI~aL~~~----p~~---------s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~-- 278 (707)
..++-.+.|...|.-|+..|... +.. ....+..|.+.+.|+ -..||..|+.+|+.+.......
T Consensus 133 L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 133 LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS--SPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS--SHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccHHHH
Confidence 34455677888888888776542 211 112345566666666 6899999999999876432210
Q ss_pred chHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCC----CChHHHHHHHHHHHhhcCCCCCCCC
Q 005234 279 AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN----KSPREAVEFVLQLLKYNDNNGNPYS 354 (707)
Q Consensus 279 ~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g----~~P~ev~~fLldlLkyNDNS~N~ys 354 (707)
.-+..++..+...--+ .+.-|+++...+|+.+=...+ ..-..+..+++.+++. .
T Consensus 211 ~~~~~~l~~l~~~~~d--------------~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--------~ 268 (852)
T 4fdd_A 211 LHIDSFIENLFALAGD--------------EEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--------Q 268 (852)
T ss_dssp TSHHHHHHHHHHHHTC--------------CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--------S
T ss_pred HHHHHHHHHHHHHcCC--------------CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--------C
Confidence 1122333322221111 223488888888876643221 1123567777777653 2
Q ss_pred hhHHHHHHHHHhhccccc---cc-chHHHHHHHHHHHHHHh----------cC----c----CCCCcccHhHHHHHHHHH
Q 005234 355 DVFWLAALVQSVGELEFG---QQ-SILFLSSLLKRIDRLLQ----------FD----R----LMPSYNGILTISCIRTLT 412 (707)
Q Consensus 355 Ds~YvA~lI~ALg~~~~~---~~-~~~~l~~vl~eI~R~l~----------lD----~----~~PSY~~vVTvacL~~L~ 412 (707)
|..-+..+++.+..+.-. .. -...+..++..+-..+. -| . -.++| .|..++..+|.
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~--~vr~~a~~~L~ 346 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW--NLRKCSAAALD 346 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC--CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc--hHHHHHHHHHH
Confidence 333445555555543210 00 01123344444433331 11 0 00222 24445566666
Q ss_pred HHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCC-----hhHHHHHHHHHHhcCccchhhhHHHHH
Q 005234 413 QIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNG-----IDSALSLFIKSVEEEPSLRGQVKLGIH 487 (707)
Q Consensus 413 ~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g-----~~~al~~~l~~l~~dp~~r~~~~~~~~ 487 (707)
.|+... |..-++.+..++..+... .-+.+|.+|+.+|..++...+. ....+..++..+ .||.+++|......
T Consensus 347 ~la~~~-~~~~~~~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~ 423 (852)
T 4fdd_A 347 VLANVY-RDELLPHILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL-SDKKALVRSITCWT 423 (852)
T ss_dssp HHHHHH-GGGGHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT-TCSSHHHHHHHHHH
T ss_pred HHHHhc-cHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHH
Confidence 665322 222223444555444333 3589999999999998643211 123455555555 67877766433333
Q ss_pred hhhHHHhhCCCCCCCCCCcHHHHHHHHHhccccccccchhhhhHHHHHHHhh
Q 005234 488 AMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILA 539 (707)
Q Consensus 488 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~d~~lR~~~~~~~~~L~ 539 (707)
..+++..-... ....-...++..|..... ..+..+|..+...+..+.
T Consensus 424 l~~l~~~~~~~--~~~~~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 424 LSRYAHWVVSQ--PPDTYLKPLMTELLKRIL---DSNKRVQEAACSAFATLE 470 (852)
T ss_dssp HHHTHHHHHHS--CTTTTHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc--hHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHH
Confidence 33444322211 111223344443333322 136788888777776665
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=91.82 E-value=2.7 Score=47.91 Aligned_cols=217 Identities=14% Similarity=0.104 Sum_probs=119.7
Q ss_pred hCCChHHHHHHHHHHHhCCCCh---H---HHHHHHHHHhc-CCCccHHHHHHHHHHHhcccccccccch-HHHHHHHHHh
Q 005234 219 KDGDVVAQAQAIAALEALPHLS---F---NVVNTLNNFLS-DSKAFWRVRIEAAYALANTASEETDWAG-LLHLVKFYKS 290 (707)
Q Consensus 219 ~DrDVvAQlEAI~aL~~~p~~s---~---~~v~aL~rtL~-D~ryFygVR~eAA~ALak~a~~~~~~~G-l~~Lik~Fk~ 290 (707)
.++|-.-|+-|+..|...-... . .....+..+|. |+. --||..|...|.++.++.+ ... +..|.++..+
T Consensus 339 ~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d--~~Ir~~aL~lL~~l~~~~N-v~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 339 QHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERD--VSVRQRAVDLLYAMCDRSN-AQQIVAEMLSYLET 415 (621)
T ss_dssp SCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCC--HHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCC--HhHHHHHHHHHHHHcChhh-HHHHHHHHHHHHHh
Confidence 4688899999998887643211 1 12345667777 775 2399999999999998764 211 2334444433
Q ss_pred ccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhccc
Q 005234 291 RRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELE 370 (707)
Q Consensus 291 ~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~ 370 (707)
. +.-+++.++.+++.+=........-+.++|+++|+... +|+..+++..+..+.
T Consensus 416 --~----------------d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~--------~~v~~ev~~~l~~ii 469 (621)
T 2vgl_A 416 --A----------------DYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAG--------DYVSEEVWYRVIQIV 469 (621)
T ss_dssp --C----------------CHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHG--------GGSCSHHHHHHHHHH
T ss_pred --c----------------CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc--------ccchHHHHHHHHHHH
Confidence 1 12345566677776643333356778999999998642 233345555555443
Q ss_pred ccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCC---CChHHHHHhhhcccCCCCcHHHHHHH
Q 005234 371 FGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGF---ISLDQVVKLIKPFRDFNTIWQVRVEA 447 (707)
Q Consensus 371 ~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~---i~~d~~~~ll~~yt~~g~~~~vRiaA 447 (707)
....+. -..++..+-.++. -|..+..+-.+|.-.+.+.+...... .|.+-+..++..| ......+|..+
T Consensus 470 ~~~~~~--~~~~~~~l~~~l~----~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~--~~~~~~v~~~~ 541 (621)
T 2vgl_A 470 INRDDV--QGYAAKTVFEALQ----APACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKF--HLCSVPTRALL 541 (621)
T ss_dssp GGGCSC--HHHHHHHHHHHHT----SSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHH--TTSCHHHHHHH
T ss_pred hCChhH--HHHHHHHHHHHHc----CccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHh--ccCCHHHHHHH
Confidence 221111 1223344444444 24445333334445556654333221 1223222222233 24568999999
Q ss_pred HHHhhhhhhccCChhHHHHHHHHHH
Q 005234 448 SRALLDLEFHCNGIDSALSLFIKSV 472 (707)
Q Consensus 448 ~~aL~~l~~~~~g~~~al~~~l~~l 472 (707)
+.+++++..........+..+++..
T Consensus 542 Lta~~Kl~~~~p~~~~~i~~~l~~~ 566 (621)
T 2vgl_A 542 LSTYIKFVNLFPEVKATIQDVLRSD 566 (621)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHSSH
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHH
Confidence 9999998765444444444444443
No 48
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.64 E-value=6.5 Score=45.54 Aligned_cols=236 Identities=16% Similarity=0.106 Sum_probs=125.3
Q ss_pred hhCCChHHHHHHHHHHHhCCCC--------hHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccch--HHHHHHH
Q 005234 218 EKDGDVVAQAQAIAALEALPHL--------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAG--LLHLVKF 287 (707)
Q Consensus 218 q~DrDVvAQlEAI~aL~~~p~~--------s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~G--l~~Lik~ 287 (707)
-.|.+...|..|+.+|...-.. -......|...+.|+ -..||..|+.+|+.+......... +..++.+
T Consensus 183 l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~--~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~ 260 (852)
T 4fdd_A 183 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDE--EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEY 260 (852)
T ss_dssp TTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3578889999999999865321 113556777778777 679999999999998764332211 2233333
Q ss_pred HHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccC------CCChHHHHHHHHHHHhhc---------CCCCCC
Q 005234 288 YKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD------NKSPREAVEFVLQLLKYN---------DNNGNP 352 (707)
Q Consensus 288 Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~------g~~P~ev~~fLldlLkyN---------DNS~N~ 352 (707)
+-+..-+ .+.-|+.....++..+-+.. ...-..+...|+..+.|+ |.....
T Consensus 261 l~~~~~~--------------~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 261 MLQRTQD--------------QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp HHHHHTC--------------SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHccC--------------CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 3321111 11236666566655553211 112224556666666432 222222
Q ss_pred CCh----hHH-HHHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCC----C
Q 005234 353 YSD----VFW-LAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI----S 423 (707)
Q Consensus 353 ysD----s~Y-vA~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i----~ 423 (707)
.+| ++- ..+.+.+|+.+.-... ...+..++..+..+++ |-+--+.-+++.++..++. +.- +
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~------~~~~~~R~aa~~alg~i~~---~~~~~~~~ 396 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLF------HHEWVVKESGILVLGAIAE---GCMQGMIP 396 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHT------CSSHHHHHHHHHHHHHTTT---TTHHHHGG
T ss_pred ccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHh---cchHHHHH
Confidence 332 122 2455566655431111 1234556677777665 2244567778888877641 210 1
Q ss_pred -hHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccC------ChhHHHHHHHHHHhcCccchhh
Q 005234 424 -LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN------GIDSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 424 -~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~------g~~~al~~~l~~l~~dp~~r~~ 481 (707)
++.++..+..... +....||.+|..+|..++...+ -....+..++..+ .|+.++++
T Consensus 397 ~l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L-~d~~~~vr 459 (852)
T 4fdd_A 397 YLPELIPHLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQ 459 (852)
T ss_dssp GHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH-TCSSHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-hCCCHHHH
Confidence 2334444444333 3457899999999998865321 1234566666666 34555544
No 49
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=90.90 E-value=5.5 Score=37.77 Aligned_cols=165 Identities=25% Similarity=0.242 Sum_probs=102.1
Q ss_pred HHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc-------c
Q 005234 214 INQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-------D 277 (707)
Q Consensus 214 ~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~-------~ 277 (707)
.-++-.+.|...|..|+.+|......+. .++..|.+.|.++ -..||..|+.+|+.++.... .
T Consensus 49 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 126 (252)
T 4hxt_A 49 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVD 126 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455567889999999999987654311 2467788888876 58999999999999984221 1
Q ss_pred cchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHH--------HHHHHHHHHhhcCCC
Q 005234 278 WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPRE--------AVEFVLQLLKYNDNN 349 (707)
Q Consensus 278 ~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~e--------v~~fLldlLkyNDNS 349 (707)
-.+++.|++..++ .+..+++....+|+.+=.. .+.. +...|+++|+.
T Consensus 127 ~~~i~~L~~~l~~------------------~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~---- 181 (252)
T 4hxt_A 127 AGGVEVLVKLLTS------------------TDSEVQKEAARALANIASG---PDEAIKAIVDAGGVEVLVKLLTS---- 181 (252)
T ss_dssp TTHHHHHHHHTTC------------------SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHcC------------------CCHHHHHHHHHHHHHHHcC---CHHHHHHHHHCcCHHHHHHHHCC----
Confidence 1246777776542 1234888888999887432 1222 66778888873
Q ss_pred CCCCChhHHHHHHHHHhhcccccccch-H-H-HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHH
Q 005234 350 GNPYSDVFWLAALVQSVGELEFGQQSI-L-F-LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 415 (707)
Q Consensus 350 ~N~ysDs~YvA~lI~ALg~~~~~~~~~-~-~-l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~ 415 (707)
+|..-...++.+|+++....... . . ...++..+.++++ +-..-+...|+.+|.+|.
T Consensus 182 ----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 182 ----TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT------STDSEVQKEAQRALENIK 240 (252)
T ss_dssp ----SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG------CSCHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC------CCcHHHHHHHHHHHHHHH
Confidence 22444577888888765421111 0 1 1124445555553 223355666666666664
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=90.50 E-value=11 Score=36.67 Aligned_cols=170 Identities=15% Similarity=0.116 Sum_probs=91.8
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhC----CC----ChHHHHHHHHHHhc-CCCccHHHHHHHHHHHhcccccccc-cch-H
Q 005234 213 WINQLEKDGDVVAQAQAIAALEAL----PH----LSFNVVNTLNNFLS-DSKAFWRVRIEAAYALANTASEETD-WAG-L 281 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~----p~----~s~~~v~aL~rtL~-D~ryFygVR~eAA~ALak~a~~~~~-~~G-l 281 (707)
|...+ +|.|..-|.+|+..|... +. ....++..|...+. |. -..||..|+.+|+.++..-.. +.. .
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 45555 689999999999888542 21 12256788989895 76 789999999999999853211 111 1
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHH
Q 005234 282 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAA 361 (707)
Q Consensus 282 ~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~ 361 (707)
..++...-+.+-+ ..-.|+.+...||..+=.. .++..+.+-|+..|+.. +..-..+
T Consensus 97 ~~ilp~ll~~l~d--------------~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~--------~~~vr~~ 152 (242)
T 2qk2_A 97 SACVPSLLEKFKE--------------KKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNK--------NPSVKSE 152 (242)
T ss_dssp HHHHHHHHHGGGC--------------CCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCS--------CHHHHHH
T ss_pred HHHHHHHHHHHcC--------------CCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC--------ChHHHHH
Confidence 1122222221111 1123777777777766332 24556666666666421 1222366
Q ss_pred HHHHhhccccc--c--cchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHH
Q 005234 362 LVQSVGELEFG--Q--QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 415 (707)
Q Consensus 362 lI~ALg~~~~~--~--~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~ 415 (707)
++..|+.+... . .....+..++..+..+++ | -+.-|.-+|.+++..++
T Consensus 153 ~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~-D-----~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 153 TALFIARALTRTQPTALNKKLLKLLTTSLVKTLN-E-----PDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT-S-----SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhc-C-----CChHHHHHHHHHHHHHH
Confidence 66666653211 1 112234445555555553 1 12234455555555543
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=90.29 E-value=1.6 Score=42.06 Aligned_cols=130 Identities=21% Similarity=0.190 Sum_probs=85.6
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccccc-----
Q 005234 213 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW----- 278 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~----- 278 (707)
..-++-.+.+...|.+|+.+|......+. .++..|.+.|.++ -..||..|+.+|+.++......
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~ 135 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVI 135 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHH
Confidence 34455567788899999999987654211 1567888888886 6899999999999988653321
Q ss_pred --chHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCCh-----HHHHHHHHHHHhhcCCCCC
Q 005234 279 --AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP-----REAVEFVLQLLKYNDNNGN 351 (707)
Q Consensus 279 --~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P-----~ev~~fLldlLkyNDNS~N 351 (707)
.|++.|++..++ .+.-+++....+|+.+=..+...- ..+...|+++|+..
T Consensus 136 ~~~~i~~L~~lL~~------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----- 192 (252)
T 4db8_A 136 DAGALPALVQLLSS------------------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----- 192 (252)
T ss_dssp HTTHHHHHHHGGGC------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS-----
T ss_pred HCCCHHHHHHHHhC------------------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC-----
Confidence 256777776542 123588888899988754220000 12345677777632
Q ss_pred CCChhHHHHHHHHHhhccc
Q 005234 352 PYSDVFWLAALVQSVGELE 370 (707)
Q Consensus 352 ~ysDs~YvA~lI~ALg~~~ 370 (707)
|..-...++.+|+++.
T Consensus 193 ---~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 193 ---NEQILQEALWALSNIA 208 (252)
T ss_dssp ---SHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHh
Confidence 3444577788888765
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.46 E-value=19 Score=40.81 Aligned_cols=241 Identities=15% Similarity=0.085 Sum_probs=128.5
Q ss_pred HHhhCCChHHHHHHHHHHHhC----CCC----hH-HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc----------
Q 005234 216 QLEKDGDVVAQAQAIAALEAL----PHL----SF-NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET---------- 276 (707)
Q Consensus 216 QLq~DrDVvAQlEAI~aL~~~----p~~----s~-~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~---------- 276 (707)
++-.+.|...|..|++.|... +.. -. .....+...+.|. -..||..|+..|..+.....
T Consensus 231 ~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 308 (861)
T 2bpt_A 231 EATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFP 308 (861)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 455678888888888887643 110 01 2344555666666 58999999999987764321
Q ss_pred -------ccch--HHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCC-CChHHHHHHHHHHHhhc
Q 005234 277 -------DWAG--LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN-KSPREAVEFVLQLLKYN 346 (707)
Q Consensus 277 -------~~~G--l~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g-~~P~ev~~fLldlLkyN 346 (707)
.... +..++...-.....++ ..++.| +|-++++...+|+.+-...| ..-+.+..+|...|..
T Consensus 309 ~~~~~~~~~~~~~~~~il~~ll~~l~~~~-----~d~~d~--~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~- 380 (861)
T 2bpt_A 309 QSPLQSYNFALSSIKDVVPNLLNLLTRQN-----EDPEDD--DWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA- 380 (861)
T ss_dssp TCSCCCCCHHHHHHHHHHHHHHHHTTCCC-----CC-CCC--CCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC-
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhcc-----cccccc--cCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCC-
Confidence 0100 1122221111112211 112222 34577777777765543222 1234556666666541
Q ss_pred CCCCCCCChhHHHHHHHHHhhccccccc-c--hHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCC-
Q 005234 347 DNNGNPYSDVFWLAALVQSVGELEFGQQ-S--ILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI- 422 (707)
Q Consensus 347 DNS~N~ysDs~YvA~lI~ALg~~~~~~~-~--~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i- 422 (707)
.+...+.+++.+||.+.-+.. . ..++..++..+.+.++ +-+..|..+++.++.+++......+
T Consensus 381 -------~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 381 -------DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN------DQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp -------SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG------CSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred -------CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 223445788889998753311 1 1234455555555553 2256677778888888874433221
Q ss_pred ---ChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccC----C-h----hHHHHHHHHHHhc-Cccchhh
Q 005234 423 ---SLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN----G-I----DSALSLFIKSVEE-EPSLRGQ 481 (707)
Q Consensus 423 ---~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~----g-~----~~al~~~l~~l~~-dp~~r~~ 481 (707)
-++.++..+....... ..||.+|..+|..+....+ . + ...+..++..+.. |+....+
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr 517 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNAR 517 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHH
Confidence 2344555444443332 7899999999988754322 1 1 2345555666642 4434433
No 53
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=89.39 E-value=6.3 Score=42.12 Aligned_cols=203 Identities=13% Similarity=0.047 Sum_probs=113.8
Q ss_pred HHhhCCChHHHHHHHHHHHhC----CCC-----hHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccc-------cccc
Q 005234 216 QLEKDGDVVAQAQAIAALEAL----PHL-----SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-------TDWA 279 (707)
Q Consensus 216 QLq~DrDVvAQlEAI~aL~~~----p~~-----s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~-------~~~~ 279 (707)
++-.+.|...|.+|+.+|... +.. ...++..|.+.|.++ .+.+|..|+.+|..++... ....
T Consensus 108 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~la~~~~~~~~~i~~~~ 185 (529)
T 1jdh_A 108 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASG 185 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 344567888899999888754 211 113467788888876 6899999999999877521 1224
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCCh----HHHHHHHHHHHhhcCCCCCCCCh
Q 005234 280 GLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP----REAVEFVLQLLKYNDNNGNPYSD 355 (707)
Q Consensus 280 Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P----~ev~~fLldlLkyNDNS~N~ysD 355 (707)
|++.|++..++. .+ --++.+...+|..+=....... ..+...|+++|+.. |
T Consensus 186 ~i~~L~~ll~~~--~~---------------~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~--------~ 240 (529)
T 1jdh_A 186 GPQALVNIMRTY--TY---------------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--------S 240 (529)
T ss_dssp HHHHHHHHHHHC--CC---------------HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS--------C
T ss_pred CHHHHHHHHHhC--Ch---------------HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC--------C
Confidence 678888887752 10 1244444444444322111000 12455666666432 3
Q ss_pred hHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHh---------cCCCChHH
Q 005234 356 VFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKL---------SGFISLDQ 426 (707)
Q Consensus 356 s~YvA~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~---------~g~i~~d~ 426 (707)
...+..++.+|+++.-..........++..+.+++. +-..-+...|..+|..|+... .| -++.
T Consensus 241 ~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~--~v~~ 312 (529)
T 1jdh_A 241 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG--GIEA 312 (529)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT------CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT--HHHH
T ss_pred hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC--ChHH
Confidence 445556677776653221111123456666666664 334455666667777764200 01 1233
Q ss_pred HHHhhhcccCCCCcHHHHHHHHHHhhhhhh
Q 005234 427 VVKLIKPFRDFNTIWQVRVEASRALLDLEF 456 (707)
Q Consensus 427 ~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~ 456 (707)
+..++.. .+....+|..|+.+|..+..
T Consensus 313 L~~ll~~---~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 313 LVRTVLR---AGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHc---cCCHHHHHHHHHHHHHHHHc
Confidence 4444432 12336899999999998754
No 54
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=88.96 E-value=6.5 Score=36.70 Aligned_cols=139 Identities=19% Similarity=0.161 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhcccccccc-------cchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHH
Q 005234 243 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD-------WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLE 315 (707)
Q Consensus 243 ~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~-------~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqk 315 (707)
....|...|.++ -..||..|+.+|+.++..... ..|++.|++..++ + +..++.
T Consensus 13 ~~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~--------------~~~v~~ 72 (210)
T 4db6_A 13 ELPQMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS----P--------------NEQILQ 72 (210)
T ss_dssp CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----S--------------CHHHHH
T ss_pred hhHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC----C--------------CHHHHH
Confidence 346788888777 689999999999999843221 1356777776543 0 124888
Q ss_pred HHHHHhhcccccCCCChH-----HHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccch--HH-HHHHHHHHH
Q 005234 316 AIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSI--LF-LSSLLKRID 387 (707)
Q Consensus 316 AIp~ALa~vRd~~g~~P~-----ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~--~~-l~~vl~eI~ 387 (707)
....||+.+=..+...-. .+...|+++|+.. |.--...++.+|+++....... .. ...++..|.
T Consensus 73 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 144 (210)
T 4db6_A 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144 (210)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--------cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHH
Confidence 888999887422100001 1456788888643 3445578888888876432211 11 123667777
Q ss_pred HHHhcCcCCCCcccHhHHHHHHHHHHHH
Q 005234 388 RLLQFDRLMPSYNGILTISCIRTLTQIA 415 (707)
Q Consensus 388 R~l~lD~~~PSY~~vVTvacL~~L~~L~ 415 (707)
++++ +-..-+...|+.+|..++
T Consensus 145 ~ll~------~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 145 QLLS------SPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHTT------CSCHHHHHHHHHHHHHHH
T ss_pred HHHc------CCCHHHHHHHHHHHHHHH
Confidence 7775 224566777778888875
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=88.74 E-value=37 Score=38.58 Aligned_cols=294 Identities=13% Similarity=0.018 Sum_probs=140.5
Q ss_pred HHHHhhCC--ChHHHHHHHHHHHhCCC---------ChHHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc----cc
Q 005234 214 INQLEKDG--DVVAQAQAIAALEALPH---------LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET----DW 278 (707)
Q Consensus 214 ~sQLq~Dr--DVvAQlEAI~aL~~~p~---------~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~----~~ 278 (707)
..++-.+. |...|..|+..|..... ........|...+.++..-+.||..|+.+|+.+...-. ..
T Consensus 133 l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 212 (876)
T 1qgr_A 133 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE 212 (876)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444566 78888888877764321 11234566778887764468999999999998763210 00
Q ss_pred chHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCC-hH----HHHHHHHHHHhhcCCCCCCC
Q 005234 279 AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-PR----EAVEFVLQLLKYNDNNGNPY 353 (707)
Q Consensus 279 ~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~-P~----ev~~fLldlLkyNDNS~N~y 353 (707)
.-...++..+.+. .. . .+.-++++...+|+.+-...+.. .+ .+..+++..++.
T Consensus 213 ~~~~~il~~l~~~-~~-------~------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-------- 270 (876)
T 1qgr_A 213 SERHFIMQVVCEA-TQ-------C------PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-------- 270 (876)
T ss_dssp HHHHHHHHHHHHH-TT-------C------SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHH-cC-------C------CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 0011344444331 10 0 11347777777777655432211 11 344555544431
Q ss_pred ChhHHHHHHHHHhhccccc-------------------ccch----HHHHHHHHHHHHHHhcC-c--CCCCcccHhHHHH
Q 005234 354 SDVFWLAALVQSVGELEFG-------------------QQSI----LFLSSLLKRIDRLLQFD-R--LMPSYNGILTISC 407 (707)
Q Consensus 354 sDs~YvA~lI~ALg~~~~~-------------------~~~~----~~l~~vl~eI~R~l~lD-~--~~PSY~~vVTvac 407 (707)
.|...+..+++.++.+.-. .... ..+..++..+-..+.-+ + --.+| -+..+|
T Consensus 271 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~--~~r~~a 348 (876)
T 1qgr_A 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW--NPCKAA 348 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC--CHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccccc--HHHHHH
Confidence 2222233333333221100 0000 12234444444444311 0 01122 455677
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCC--h----hHHHHHHHHHHhcCccchhh
Q 005234 408 IRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNG--I----DSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 408 L~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g--~----~~al~~~l~~l~~dp~~r~~ 481 (707)
..++..++..... --++.++..+..... ...+.+|.+|+.+|..++..... . ...+..++..+ .||.+.+|
T Consensus 349 ~~~l~~l~~~~~~-~~~~~~l~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l-~d~~~~vr 425 (876)
T 1qgr_A 349 GVCLMLLATCCED-DIVPHVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-KDPSVVVR 425 (876)
T ss_dssp HHHHHHHHHHHGG-GGHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH-TCSSHHHH
T ss_pred HHHHHHHHHHCcH-hhHHHHHHHHHHHcc-CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 7777777643221 113444444444333 34589999999999988643220 1 12344455555 57777665
Q ss_pred hHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHHHHhccccccccchhhhhHHHHHHHhh
Q 005234 482 VKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILA 539 (707)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~d~~lR~~~~~~~~~L~ 539 (707)
.......-+++....... ...--.+.++..+...... +.++|..+...+..|.
T Consensus 426 ~~a~~~l~~~~~~~~~~~-~~~~~l~~~l~~l~~~l~~----~~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 426 DTAAWTVGRICELLPEAA-INDVYLAPLLQCLIEGLSA----EPRVASNVCWAFSSLA 478 (876)
T ss_dssp HHHHHHHHHHHHHCGGGT-SSTTTHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhc-ccHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHH
Confidence 333333334443322110 0111234555545444432 3566666655555554
No 56
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.28 E-value=4.9 Score=41.12 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=76.7
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHH-HhcCCCccHHHHHHHHHHHhcccc-cccccchHHHHHHHHHh
Q 005234 213 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNN-FLSDSKAFWRVRIEAAYALANTAS-EETDWAGLLHLVKFYKS 290 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~r-tL~D~ryFygVR~eAA~ALak~a~-~~~~~~Gl~~Lik~Fk~ 290 (707)
....|-++.--.+|+-|+..|++.+ ....+...+.. ...|+ -||||-.+|.++..+.. .... .-+..+.+.-++
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~~-~~~~~L~~ir~~va~D~--~WrVre~lA~a~~~~~~~~~pe-~~l~~~~~W~~d 150 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYLS-KDKEILIFMRDEVSKDN--NWRVQEVLAKAFDEFCKKIEYK-KALPIIDEWLKS 150 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTT-TSHHHHHHHHHTGGGCS--CHHHHHHHHHHHHHHHHHHCTT-TTHHHHHHHHHC
T ss_pred HHHHHHhCcchHHHHHHHHHHHhcc-CcHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHHhcCHH-HHHHHHHHHhcC
Confidence 3445556665699999999998873 33345555555 44455 68999999999998764 2221 113333333332
Q ss_pred ccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcc--cccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHH-HHHHHHhh
Q 005234 291 RRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV--RAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWL-AALVQSVG 367 (707)
Q Consensus 291 ~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~v--Rd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~Yv-A~lI~ALg 367 (707)
.++.||++....+--. +......|..+...|-.+. -|.++|| .++..+|-
T Consensus 151 ------------------~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~---------~D~s~yVrKSVan~Lr 203 (240)
T 3l9t_A 151 ------------------SNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLK---------EDVSEYVRKSVGNALR 203 (240)
T ss_dssp ------------------SSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTT---------TCSCHHHHHHHHHHHH
T ss_pred ------------------CCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhc---------CChHHHHHHHHHHHHH
Confidence 3467999888876220 1111224555555443222 3678998 78888888
Q ss_pred ccc
Q 005234 368 ELE 370 (707)
Q Consensus 368 ~~~ 370 (707)
++.
T Consensus 204 D~S 206 (240)
T 3l9t_A 204 DIS 206 (240)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 57
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.02 E-value=2.6 Score=51.23 Aligned_cols=216 Identities=15% Similarity=0.163 Sum_probs=119.2
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccc-cccccchHHHHHHHHHhccCCCCCCCCCCCC
Q 005234 226 QAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS-EETDWAGLLHLVKFYKSRRFDENIGLPRPND 304 (707)
Q Consensus 226 QlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~-~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNd 304 (707)
+..=+++|...+++ .++.++...+.+.+ .-. .+|+.+|+.... ..++-.-+..+..+.+. +. .+
T Consensus 342 r~~~lDal~~aGT~--~a~~~i~~~i~~~~-l~~--~ea~~~l~~~~~~~~Pt~e~l~~~~~l~~~----~~---~~--- 406 (1056)
T 1lsh_A 342 RRWILDAVPAMATS--EALLFLKRTLASEQ-LTS--AEATQIVASTLSNQQATRESLSYARELLNT----SF---IR--- 406 (1056)
T ss_dssp HHHHHHHHHHHCSH--HHHHHHHHHHHTTC-SCH--HHHHHHHHHHHHTCCCCHHHHHHHHHHHTC----HH---HH---
T ss_pred HHHHHHHhHhcCCH--HHHHHHHHHHHcCC-CCH--HHHHHHHHHhhccCCCCHHHHHHHHHHHhC----cc---cc---
Confidence 33346677766664 46777777777765 333 335555543221 11221123333333221 00 11
Q ss_pred CCChhHHHHHHHHHHHhhcccc----cCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccchHHHH
Q 005234 305 FRDFSEYFVLEAIPHAVAMVRA----ADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLS 380 (707)
Q Consensus 305 Fsdf~~YfVqkAIp~ALa~vRd----~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~~~l~ 380 (707)
.+-.|+++..-|+|.+=. .++.|+.++++-+.+.|...=++ .|..-+-..++|||++..+
T Consensus 407 ----~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~----~~~~~~~~~LkaLGN~g~p-------- 470 (1056)
T 1lsh_A 407 ----NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR----AKEEEIVLALKALGNAGQP-------- 470 (1056)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHTCG--------
T ss_pred ----cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc----CChHHHHHHHHHhhccCCh--------
Confidence 123467766677754322 33568876555555554322112 2444468899999998754
Q ss_pred HHHHHHHHHHhcCcC-CCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHH-hhhcccCCCCcHHHHHHHHHHhhhhhhcc
Q 005234 381 SLLKRIDRLLQFDRL-MPSYNGILTISCIRTLTQIALKLSGFISLDQVVK-LIKPFRDFNTIWQVRVEASRALLDLEFHC 458 (707)
Q Consensus 381 ~vl~eI~R~l~lD~~-~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~-ll~~yt~~g~~~~vRiaA~~aL~~l~~~~ 458 (707)
.+++.|.+++.-.+. -.+...-|.++|+.+|.+++ -..|- .+.+ ++.-|.+......||++|+..|++-
T Consensus 471 ~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~----~~~p~-~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t---- 541 (1056)
T 1lsh_A 471 NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA----KRDPR-KVQEIVLPIFLNVAIKSELRIRSCIVFFES---- 541 (1056)
T ss_dssp GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG----GTCHH-HHHHHHHHHHHCTTSCHHHHHHHHHHHHHT----
T ss_pred hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh----hhchH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHH----
Confidence 234566666542111 22334468889999988875 12221 1211 2334566778899999999999973
Q ss_pred CChhHHHHHHHHHHhcCccchhh
Q 005234 459 NGIDSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 459 ~g~~~al~~~l~~l~~dp~~r~~ 481 (707)
......|.-....+..||+.-+.
T Consensus 542 ~P~~~~l~~ia~~l~~E~~~QV~ 564 (1056)
T 1lsh_A 542 KPSVALVSMVAVRLRREPNLQVA 564 (1056)
T ss_dssp CCCHHHHHHHHHHHTTCSCHHHH
T ss_pred CcCHHHHHHHHHHHhhCchHHHH
Confidence 22234577778888888876443
No 58
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=87.65 E-value=12 Score=43.53 Aligned_cols=215 Identities=16% Similarity=0.101 Sum_probs=117.0
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc-------
Q 005234 213 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 276 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~------- 276 (707)
.+-++-++.|...|..|+.+|......+. ..+..|.+.|.+...--.||..|+.+|+.+.....
T Consensus 403 ~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~ 482 (780)
T 2z6g_A 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 34455577899999999888876543211 24567778886532123899999999999875221
Q ss_pred ---ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCC----hHHHHHHHHHHHhhcCC-
Q 005234 277 ---DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS----PREAVEFVLQLLKYNDN- 348 (707)
Q Consensus 277 ---~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~----P~ev~~fLldlLkyNDN- 348 (707)
...|++.|++.++. + ...-|+++...+|+.+=...... -..+...|+++|+..+.
T Consensus 483 ~v~~~~~l~~L~~lL~~---------~--------~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 483 AVRLHYGLPVVVKLLHP---------P--------SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp HHHHTTCHHHHHHTTST---------T--------CCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHhcC---------C--------ChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchh
Confidence 12356777766542 0 01248888889988874211000 01256677788875430
Q ss_pred --------CCC-----CCChhHHHHHHHHHhhcccccccchHHH--HHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHH
Q 005234 349 --------NGN-----PYSDVFWLAALVQSVGELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQ 413 (707)
Q Consensus 349 --------S~N-----~ysDs~YvA~lI~ALg~~~~~~~~~~~l--~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~ 413 (707)
-.| .-++.--+..++.||+++.........+ ..++.-|..++. +-..-|...|..+|..
T Consensus 546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~------~~~~~v~~~a~~aL~~ 619 (780)
T 2z6g_A 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY------SPIENIQRVAAGVLCE 619 (780)
T ss_dssp HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGG------CSCHHHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHc------CCCHHHHHHHHHHHHH
Confidence 011 1112223456777777764322111111 124455666664 2233455556666666
Q ss_pred HHH--------HhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhc
Q 005234 414 IAL--------KLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFH 457 (707)
Q Consensus 414 L~~--------~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~ 457 (707)
|.. .-.|. ++.+..++. ..-..||..|..+|..+...
T Consensus 620 L~~~~~~~~~i~~~g~--i~~L~~Ll~-----~~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 620 LAQDKEAAEAIEAEGA--TAPLTELLH-----SRNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp HHTSHHHHHHHHHTTC--HHHHHHGGG-----CSCHHHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHCCC--HHHHHHHHc-----CCCHHHHHHHHHHHHHHHcC
Confidence 531 01111 122332221 23467888888888887654
No 59
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=87.05 E-value=4.1 Score=48.30 Aligned_cols=202 Identities=13% Similarity=0.092 Sum_probs=117.6
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhccccccc------ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHH
Q 005234 243 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEA 316 (707)
Q Consensus 243 ~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~------~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkA 316 (707)
++..|...|..+ --.||.+||.+|+.++.... +..|++.|+...++ +- .-+|+.
T Consensus 496 aVp~LV~LL~s~--s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s-------~~-----------~~~k~~ 555 (810)
T 3now_A 496 ITTALCALAKTE--SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE-------GT-----------EKGKRH 555 (810)
T ss_dssp HHHHHHHHHTCC--CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS-------SC-----------HHHHHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc-------CC-----------HHHHHH
Confidence 356788888765 68999999999999986532 22357888888764 11 136888
Q ss_pred HHHHhhccc-ccC------CCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccch--HHH-HHHHHHH
Q 005234 317 IPHAVAMVR-AAD------NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSI--LFL-SSLLKRI 386 (707)
Q Consensus 317 Ip~ALa~vR-d~~------g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~--~~l-~~vl~eI 386 (707)
...||+++= +.+ +....++...|+++|..+ ++......++.||+++....+.. ..+ +..+..|
T Consensus 556 Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~-------~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~L 628 (810)
T 3now_A 556 ATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD-------CTALENFESLMALTNLASMNESVRQRIIKEQGVSKI 628 (810)
T ss_dssp HHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT-------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC-------CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence 888888752 222 101134678899999632 23343456778888876442211 111 1355667
Q ss_pred HHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChH------HHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCC
Q 005234 387 DRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLD------QVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNG 460 (707)
Q Consensus 387 ~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d------~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g 460 (707)
..++. |-+.-|..+|.+++++|.. +.-... ..+..+..+... .-..+|.+|..+|.-+......
T Consensus 629 v~LL~------s~~~~Vq~~A~~~L~NLa~---~~~~~~~~v~~~g~l~~Lv~LL~s-~d~~vq~~Aa~ALanLt~~s~~ 698 (810)
T 3now_A 629 EYYLM------EDHLYLTRAAAQCLCNLVM---SEDVIKMFEGNNDRVKFLALLCED-EDEETATACAGALAIITSVSVK 698 (810)
T ss_dssp HHHHH------SCCTTHHHHHHHHHHHHTT---SHHHHHHHHSSSSHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHc------CCCHHHHHHHHHHHHHHhC---ChHHHHHHHhccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCCHH
Confidence 77775 4456677888888888751 100000 011222223333 3468999999999888642111
Q ss_pred -hh------HHHHHHHHHHhcCccchhhh
Q 005234 461 -ID------SALSLFIKSVEEEPSLRGQV 482 (707)
Q Consensus 461 -~~------~al~~~l~~l~~dp~~r~~~ 482 (707)
.+ ..+..++.++ .++++..+.
T Consensus 699 ~~~~ii~~~g~I~~Lv~LL-~s~d~~vq~ 726 (810)
T 3now_A 699 CCEKILAIASWLDILHTLI-ANPSPAVQH 726 (810)
T ss_dssp HHHHHHTSTTHHHHHHHHH-TCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH-CCCCHHHHH
Confidence 11 2345566655 345555443
No 60
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=86.47 E-value=20 Score=38.13 Aligned_cols=229 Identities=12% Similarity=0.108 Sum_probs=123.3
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCCCh--------HHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc-------
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 276 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s--------~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~------- 276 (707)
..+.-|..+.|...|..|+.+|......+ ...+..|.+.|.++ -..||..|+.+|..++....
T Consensus 63 ~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~ 140 (529)
T 1jdh_A 63 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVR 140 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34455666678889999999988753321 02456788888876 48999999999999876421
Q ss_pred ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCC-----ChHHHHHHHHHHHhhcCCCCC
Q 005234 277 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK-----SPREAVEFVLQLLKYNDNNGN 351 (707)
Q Consensus 277 ~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~-----~P~ev~~fLldlLkyNDNS~N 351 (707)
...+++.|++..++ + +..++.....+|+.+-..+.. .-..+.+.|+++|+..+
T Consensus 141 ~~g~i~~L~~ll~~----~--------------~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~---- 198 (529)
T 1jdh_A 141 LAGGLQKMVALLNK----T--------------NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT---- 198 (529)
T ss_dssp HHTHHHHHHHGGGC----C--------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC----
T ss_pred HcCCHHHHHHHHhc----C--------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC----
Confidence 12356777776643 1 123566555566544211100 01135667888887643
Q ss_pred CCChhHHHHHHHHHhhcccccccchHHH--HHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHH
Q 005234 352 PYSDVFWLAALVQSVGELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVK 429 (707)
Q Consensus 352 ~ysDs~YvA~lI~ALg~~~~~~~~~~~l--~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ 429 (707)
+..-..++..+|.++.........+ ..++..+.+++. +...-+...|+.+|..|............+..
T Consensus 199 ---~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~ 269 (529)
T 1jdh_A 199 ---YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT------DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLG 269 (529)
T ss_dssp ---CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTT------SSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHH
T ss_pred ---hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHh------CCChHHHHHHHHHHHHHhcCChhhHHHHhHHH
Confidence 1222234445555443332222111 234455555553 22344555667778887521111111112222
Q ss_pred hhhcccCCCCcHHHHHHHHHHhhhhhhccC-Ch-----hHHHHHHHHHHhc
Q 005234 430 LIKPFRDFNTIWQVRVEASRALLDLEFHCN-GI-----DSALSLFIKSVEE 474 (707)
Q Consensus 430 ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~-g~-----~~al~~~l~~l~~ 474 (707)
.+..... .....+|..|..+|..+..... .. ..++..++..+..
T Consensus 270 ~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 270 TLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHHHHTT-CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence 2222222 2457899999999998864311 00 1245556666643
No 61
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=86.34 E-value=5.6 Score=46.95 Aligned_cols=189 Identities=10% Similarity=0.094 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhccccccc------ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHH
Q 005234 243 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEA 316 (707)
Q Consensus 243 ~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~------~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkA 316 (707)
++..|...+..+ .-.+|..|+.+|..++.... ...|++.|+....+. -+.. + -++..
T Consensus 458 vIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~-------~~~~----~----~~k~~ 520 (778)
T 3opb_A 458 LISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK-------QDIG----E----PIRIL 520 (778)
T ss_dssp HHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC----------C----C----HHHHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-------CCcc----h----HHHHH
Confidence 667888777666 78999999999999986532 334578888886541 0110 1 25666
Q ss_pred HHHHhhccc-ccC------CCChHHHHHHHHHHHhhcCCCCC-CCChh-----HHHHHHHHHhhcccccccc--hHHHH-
Q 005234 317 IPHAVAMVR-AAD------NKSPREAVEFVLQLLKYNDNNGN-PYSDV-----FWLAALVQSVGELEFGQQS--ILFLS- 380 (707)
Q Consensus 317 Ip~ALa~vR-d~~------g~~P~ev~~fLldlLkyNDNS~N-~ysDs-----~YvA~lI~ALg~~~~~~~~--~~~l~- 380 (707)
-..||+++= +.+ |..+.++.+.|++||.....+.+ +-++. -=....+.||+++....++ ...-.
T Consensus 521 AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 677777654 222 44445899999999984333222 11111 1145777888887544321 11112
Q ss_pred -----HHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcC----CCCh--HH---HHHhhhcccCCCCcHHHHHH
Q 005234 381 -----SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG----FISL--DQ---VVKLIKPFRDFNTIWQVRVE 446 (707)
Q Consensus 381 -----~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g----~i~~--d~---~~~ll~~yt~~g~~~~vRia 446 (707)
.++.-|..++. |-+.-|..+|.++++.|...-.+ .... +. -+..+..+.+. .-..+|.+
T Consensus 601 Ii~~~ga~~~L~~LL~------s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~A 673 (778)
T 3opb_A 601 IVSTKVYWSTIENLML------DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRA 673 (778)
T ss_dssp HHHSHHHHHHHHHGGG------CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHH
T ss_pred HHHhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHH
Confidence 24445555553 55778999999999998731111 0000 01 01233334433 33588899
Q ss_pred HHHHhhhhh
Q 005234 447 ASRALLDLE 455 (707)
Q Consensus 447 A~~aL~~l~ 455 (707)
|..+|.-+.
T Consensus 674 AagALAnLt 682 (778)
T 3opb_A 674 VAAIFANIA 682 (778)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888773
No 62
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=86.31 E-value=23 Score=35.60 Aligned_cols=212 Identities=17% Similarity=0.217 Sum_probs=121.0
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccch--HHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 005234 242 NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAG--LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH 319 (707)
Q Consensus 242 ~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~G--l~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ 319 (707)
.....|..-|-|+ -|-||.-|...+..++.+...... ..-|+-+.++ +-.|| +-++|++
T Consensus 32 ~~l~~lI~~LDDD--lwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k-----sEaIp------------ltqeIa~ 92 (253)
T 2db0_A 32 SVLKKLIELLDDD--LWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK-----SEAIP------------LTQEIAK 92 (253)
T ss_dssp HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH-----CCSHH------------HHHHHHH
T ss_pred HHHHHHHHHhccH--HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-----cccCc------------hHHHHHH
Confidence 4567788888787 999999999999988875443222 2333434333 22454 3578999
Q ss_pred HhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCc
Q 005234 320 AVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSY 399 (707)
Q Consensus 320 ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY 399 (707)
|+|.+--.. |..| +=+.-+|..|=-- .|.--.-++--+|+.+.- .+...+..+..+|-..+. |-
T Consensus 93 a~G~la~i~---Pe~v-~~vVp~lfanyri----gd~kikIn~~yaLeeIar--anP~l~~~v~rdi~smlt------sk 156 (253)
T 2db0_A 93 AFGQMAKEK---PELV-KSMIPVLFANYRI----GDEKTKINVSYALEEIAK--ANPMLMASIVRDFMSMLS------SK 156 (253)
T ss_dssp HHHHHHHHC---HHHH-HHHHHHHHHHSCC----CSHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHTS------CS
T ss_pred HHhHHHHhC---HHHH-HhhHHHHHHHHhc----CCccceecHHHHHHHHHH--hChHHHHHHHHHHHHHhc------CC
Confidence 998765433 4444 4444555544222 233333345555554321 123345667777777764 77
Q ss_pred ccHhHHHHHHHHHHHHHHhcC---CCC-hHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCChhHHHHHHHHHHhcC
Q 005234 400 NGILTISCIRTLTQIALKLSG---FIS-LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEE 475 (707)
Q Consensus 400 ~~vVTvacL~~L~~L~~~~~g---~i~-~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~~l~~d 475 (707)
++.=..++|.-+..++. ++ +.| ++.++.++ ++.-.-||..|.++|+.++...+....+..--++-+ .|
T Consensus 157 d~~Dkl~aLnFi~alGe--n~~~yv~PfLprL~aLL-----~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~-~D 228 (253)
T 2db0_A 157 NREDKLTALNFIEAMGE--NSFKYVNPFLPRIINLL-----HDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEEL-ND 228 (253)
T ss_dssp SHHHHHHHHHHHHTCCT--TTHHHHGGGHHHHHGGG-----GCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-CC
T ss_pred ChHHHHHHHHHHHHHhc--cCccccCcchHHHHHHH-----cCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHh-cC
Confidence 78888888887766541 11 112 23344333 234468999999999999865432333333222323 35
Q ss_pred ccchhhhHHHHHhhhHHHhhC
Q 005234 476 PSLRGQVKLGIHAMRICQIKG 496 (707)
Q Consensus 476 p~~r~~~~~~~~~~~~~~~~~ 496 (707)
++--++.++.-...+++..++
T Consensus 229 ~S~lv~~~V~egL~rl~l~e~ 249 (253)
T 2db0_A 229 TSSLVNKTVKEGISRLLLLEG 249 (253)
T ss_dssp SCHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHhc
Confidence 665555555544556655554
No 63
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=85.60 E-value=20 Score=40.23 Aligned_cols=217 Identities=15% Similarity=0.089 Sum_probs=121.3
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc-----
Q 005234 211 QMWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET----- 276 (707)
Q Consensus 211 ~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~----- 276 (707)
--..-++-++.|...|..|..+|......+. .++..|.+.|.+..--..||..|+.+|+.+.....
T Consensus 265 i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~ 344 (644)
T 2z6h_A 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 344 (644)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444555667888889989888865422110 14667788887633247999999999999975211
Q ss_pred -----ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCC----ChHHHHHHHHHHHhhcC
Q 005234 277 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----SPREAVEFVLQLLKYND 347 (707)
Q Consensus 277 -----~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~----~P~ev~~fLldlLkyND 347 (707)
...|++.|++..++ + .+.-++++...+|+.+=..... .-..+...|+++|+..+
T Consensus 345 q~~v~~~~~l~~L~~lL~~---------~--------~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~ 407 (644)
T 2z6h_A 345 QNAVRLHYGLPVVVKLLHP---------P--------SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 407 (644)
T ss_dssp HHHHHHTTHHHHHHHTTST---------T--------CCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHhCc---------c--------CchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccc
Confidence 12356666665432 0 1134888888888876421100 01136677888887643
Q ss_pred C---------CCC-----CCChhHHHHHHHHHhhcccccccchHHH--HHHHHHHHHHHhcCcCCCCcccHhHHHHHHHH
Q 005234 348 N---------NGN-----PYSDVFWLAALVQSVGELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTL 411 (707)
Q Consensus 348 N---------S~N-----~ysDs~YvA~lI~ALg~~~~~~~~~~~l--~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L 411 (707)
. ..| ..++.-.+.+++.||+++.........+ ..++.-|..++. +-..-|...|..+|
T Consensus 408 ~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~------~~~~~v~~~a~~aL 481 (644)
T 2z6h_A 408 QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY------SPIENIQRVAAGVL 481 (644)
T ss_dssp HHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTT------CSCHHHHHHHHHHH
T ss_pred hhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHc------CCCHHHHHHHHHHH
Confidence 1 011 1233444567777777665332221111 134566666664 22333555566666
Q ss_pred HHHHHH--------hcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhc
Q 005234 412 TQIALK--------LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFH 457 (707)
Q Consensus 412 ~~L~~~--------~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~ 457 (707)
.++... ..|. ++.+.+++ . ..-..||..|..+|..+...
T Consensus 482 ~~l~~~~~~~~~i~~~g~--l~~L~~ll----~-~~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 482 CELAQDKEAAEAIEAEGA--TAPLTELL----H-SRNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp HHHHTSHHHHHHHHHTTC--HHHHHHHT----T-CSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCHHHHHHHHHcCC--hhHHHHHH----c-CCCHHHHHHHHHHHHHHhcc
Confidence 665410 1121 22333322 2 23467999999999998754
No 64
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=84.96 E-value=13 Score=37.04 Aligned_cols=58 Identities=9% Similarity=0.085 Sum_probs=44.7
Q ss_pred HHHHHhhCCChHHHHHHHHHHHh-CC---------C-ChHHHHHHHHHHh-cCCCccHHHHHHHHHHHhcccc
Q 005234 213 WINQLEKDGDVVAQAQAIAALEA-LP---------H-LSFNVVNTLNNFL-SDSKAFWRVRIEAAYALANTAS 273 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~-~p---------~-~s~~~v~aL~rtL-~D~ryFygVR~eAA~ALak~a~ 273 (707)
|..++ .+.+-.-|.+|+..|.. .- . .....+..|...+ .|. -..||..|+.+|+.++.
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~ 90 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELICD 90 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHH
Confidence 56667 57899999999988887 41 1 1134678888999 677 57889999999999884
No 65
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=83.30 E-value=45 Score=34.44 Aligned_cols=239 Identities=11% Similarity=0.066 Sum_probs=125.4
Q ss_pred HHHHhhCCChHHHHHHHHHHHhCCCC-hHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccc---------cccchH--
Q 005234 214 INQLEKDGDVVAQAQAIAALEALPHL-SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE---------TDWAGL-- 281 (707)
Q Consensus 214 ~sQLq~DrDVvAQlEAI~aL~~~p~~-s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~---------~~~~Gl-- 281 (707)
..++ .++|-..|.+|-+.|...... .......|...+.+...-..||..||..|.+.-... ..|..+
T Consensus 7 L~~~-~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~ 85 (462)
T 1ibr_B 7 LEKT-VSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDA 85 (462)
T ss_dssp HHHT-TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCH
T ss_pred HHHh-cCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCH
Confidence 3444 467888888888888765431 124567788888887567899999999999875321 002111
Q ss_pred ---HHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccc---cCCCChHHHHHHHHHHHhhcCCCCCCCCh
Q 005234 282 ---LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRA---ADNKSPREAVEFVLQLLKYNDNNGNPYSD 355 (707)
Q Consensus 282 ---~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd---~~g~~P~ev~~fLldlLkyNDNS~N~ysD 355 (707)
..+....-.....++..+ +.+..+++.+=. .++ ..+++..+|+..+.... +|
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~v---------------~~~~~~i~~ia~~~~~~~-~w~~ll~~L~~~l~~~~------~~ 143 (462)
T 1ibr_B 86 NARREVKNYVLQTLGTETYRP---------------SSASQCVAGIACAEIPVN-QWPELIPQLVANVTNPN------ST 143 (462)
T ss_dssp HHHHHHHHHHHHHTTCCCSSS---------------CSHHHHHHHHHHHHGGGT-CCTTHHHHHHHHHHCTT------CC
T ss_pred HHHHHHHHHHHHHhCCCCchh---------------hHHHHHHHHHHHHhcccc-ccHHHHHHHHHHhccCC------CC
Confidence 111111111112222111 222233332211 112 34678888888886320 13
Q ss_pred hHHHHHHHHHhhcccc---cccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCC---h-HHHH
Q 005234 356 VFWLAALVQSVGELEF---GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS---L-DQVV 428 (707)
Q Consensus 356 s~YvA~lI~ALg~~~~---~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~---~-d~~~ 428 (707)
...+..++.+|+.+.- +..-..+...++..+..+++-+ .-+..|..++++++..+........+ . +.+.
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~----~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 219 (462)
T 1ibr_B 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE----EPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219 (462)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT----CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455667777776431 1111234566778888888632 11356788888888775210000000 0 1122
Q ss_pred HhhhcccCCCCcHHHHHHHHHHhhhhhhccC-----Chh-HHHHHHHHHHhcCccchhh
Q 005234 429 KLIKPFRDFNTIWQVRVEASRALLDLEFHCN-----GID-SALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 429 ~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~-----g~~-~al~~~l~~l~~dp~~r~~ 481 (707)
..+..... +.-..+|.+|+++|..+..... -.. ..+.+++..+ .|.+...+
T Consensus 220 ~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~ 276 (462)
T 1ibr_B 220 QVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVA 276 (462)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHH
Confidence 22332222 3457999999999998864321 123 4566555555 34444333
No 66
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=81.80 E-value=30 Score=40.21 Aligned_cols=229 Identities=12% Similarity=0.144 Sum_probs=119.2
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhCCCCh--------HHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc------
Q 005234 211 QMWINQLEKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 276 (707)
Q Consensus 211 ~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s--------~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~------ 276 (707)
...+..|+.+.|...|..|+.+|....... ..++..|.+.|.++ --.||..|+.+|..++....
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP--VDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 344566777789999999999887632211 02467788888876 58999999999999976421
Q ss_pred -ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccC--CC---ChHHHHHHHHHHHhhcCCCC
Q 005234 277 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD--NK---SPREAVEFVLQLLKYNDNNG 350 (707)
Q Consensus 277 -~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~--g~---~P~ev~~fLldlLkyNDNS~ 350 (707)
...+++.|++..++ + +.-++.....+|+.+=..+ ++ .-..+.+.|+.+|+..+
T Consensus 273 ~~~g~v~~Lv~lL~~----~--------------~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~--- 331 (780)
T 2z6g_A 273 RLAGGLQKMVALLNK----T--------------NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--- 331 (780)
T ss_dssp HHTTHHHHHHHGGGC----C--------------CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC---
T ss_pred HHcCCHHHHHHHHhc----C--------------CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC---
Confidence 12346777776643 1 1124444444444221100 00 00134567778887431
Q ss_pred CCCChh-HHHHHHHHHhhcccccccchHH-H-HHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHH
Q 005234 351 NPYSDV-FWLAALVQSVGELEFGQQSILF-L-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQV 427 (707)
Q Consensus 351 N~ysDs-~YvA~lI~ALg~~~~~~~~~~~-l-~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~ 427 (707)
.... .+.+.++..|+. ....... + ..++..|..++. +-..-+...|+.+|..|+.........+.+
T Consensus 332 --~~~~~~~a~~aL~~Ls~---~~~~~~~i~~~g~l~~Ll~lL~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 400 (780)
T 2z6g_A 332 --YEKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLT------DPSQRLVQNCLWTLRNLSDAATKQEGMEGL 400 (780)
T ss_dssp --CHHHHHHHHHHHHHHHT---STTHHHHHHHTTHHHHHGGGTT------CSCHHHHHHHHHHHHHHHTTCTTCSCCHHH
T ss_pred --HHHHHHHHHHHHHHhhc---ChHHHHHHHHhchHHHHHHHHc------CCchHHHHHHHHHHHHHhccchhhhhhhhH
Confidence 1111 123444455543 2111111 1 123444444443 223345555677788876221111112223
Q ss_pred HHhhhcccCCCCcHHHHHHHHHHhhhhhhccCCh------hHHHHHHHHHHhc
Q 005234 428 VKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGI------DSALSLFIKSVEE 474 (707)
Q Consensus 428 ~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g~------~~al~~~l~~l~~ 474 (707)
+..+..... .....+|..|..+|..+....... ..++..++..+..
T Consensus 401 i~~Lv~lL~-~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 401 LGTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 333322222 244789999999999886431100 1245566666643
No 67
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=79.92 E-value=40 Score=37.74 Aligned_cols=212 Identities=13% Similarity=0.134 Sum_probs=115.2
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhCCCCh--------HHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc------
Q 005234 211 QMWINQLEKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 276 (707)
Q Consensus 211 ~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~s--------~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~------ 276 (707)
...+.-|..+.|...|..|+.+|....... ..++..|.+.|.++ --.||..|+.+|..++....
T Consensus 59 ~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~v 136 (644)
T 2z6h_A 59 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAV 136 (644)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 445666766678999999998887643221 02467788888876 58999999999999975421
Q ss_pred -ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCC-----ChHHHHHHHHHHHhhcCCCC
Q 005234 277 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK-----SPREAVEFVLQLLKYNDNNG 350 (707)
Q Consensus 277 -~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~-----~P~ev~~fLldlLkyNDNS~ 350 (707)
.-.+++.|++..++. | ..++.+...+|+.+=..+.. .-..+...|+++|+..+
T Consensus 137 ~~~g~i~~Lv~lL~~~-----------~-------~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--- 195 (644)
T 2z6h_A 137 RLAGGLQKMVALLNKT-----------N-------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--- 195 (644)
T ss_dssp HHTTHHHHHHHGGGCC-----------C-------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC---
T ss_pred HHCCChHHHHHHHCcC-----------C-------HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC---
Confidence 123467777766531 1 12566555555543211100 01135677888887432
Q ss_pred CCCChhHHHHHHHHHhhcccccccchHH-H-HHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHH
Q 005234 351 NPYSDVFWLAALVQSVGELEFGQQSILF-L-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVV 428 (707)
Q Consensus 351 N~ysDs~YvA~lI~ALg~~~~~~~~~~~-l-~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~ 428 (707)
..+. +.+++.+|.++......... . ..++..|.+++. +-..-+...|+.+|..|+...........++
T Consensus 196 --~~~~--~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~------~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i 265 (644)
T 2z6h_A 196 --YEKL--LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT------DPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 265 (644)
T ss_dssp --CHHH--HHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTT------CSCHHHHHHHHHHHHHHGGGCTTCCSCHHHH
T ss_pred --hHHH--HHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHh------cCCHHHHHHHHHHHHHHhhcchhhhhhhhHH
Confidence 1222 23444455444333222211 1 124445555443 2234556667777888752111111112222
Q ss_pred HhhhcccCCCCcHHHHHHHHHHhhhhhh
Q 005234 429 KLIKPFRDFNTIWQVRVEASRALLDLEF 456 (707)
Q Consensus 429 ~ll~~yt~~g~~~~vRiaA~~aL~~l~~ 456 (707)
..+...... ....+|..|..+|..+..
T Consensus 266 ~~Lv~lL~~-~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 266 GTLVQLLGS-DDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 222222222 346899999999988754
No 68
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=71.26 E-value=75 Score=30.53 Aligned_cols=152 Identities=11% Similarity=0.055 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhccccc--C--CCChHHHHHHHHHHH-hhcCCCCCCCChhHHHHHHHHHhhcccc--cccchHHHHHH
Q 005234 310 EYFVLEAIPHAVAMVRAA--D--NKSPREAVEFVLQLL-KYNDNNGNPYSDVFWLAALVQSVGELEF--GQQSILFLSSL 382 (707)
Q Consensus 310 ~YfVqkAIp~ALa~vRd~--~--g~~P~ev~~fLldlL-kyNDNS~N~ysDs~YvA~lI~ALg~~~~--~~~~~~~l~~v 382 (707)
++..|++-..+|+.+=.. . .....++...|..+| +.. +.--+.+.+.+||.+.. +..-..+...+
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~--------~~~V~~~a~~~l~~la~~l~~~~~~~~~~i 99 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS--------NVVLVAMAGKCLALLAKGLAKRFSNYASAC 99 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC--------CHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455566555555543221 0 112356677777777 331 23334566666665431 11112345556
Q ss_pred HHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccC---
Q 005234 383 LKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN--- 459 (707)
Q Consensus 383 l~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~--- 459 (707)
+.-|-..+. .-+..|.-+|..+|..+. ...+++.++..+..+.... .+.+|..++..|..+....+
T Consensus 100 lp~ll~~l~------d~~~~vr~~a~~aL~~~~----~~~~~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 100 VPSLLEKFK------EKKPNVVTALREAIDAIY----ASTSLEAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHGGG------CCCHHHHHHHHHHHHHHH----TTSCHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence 666666554 334567788888888875 3456777766666655554 46999999999999532211
Q ss_pred -C---hhHHHHHHHHHHhcCccchhh
Q 005234 460 -G---IDSALSLFIKSVEEEPSLRGQ 481 (707)
Q Consensus 460 -g---~~~al~~~l~~l~~dp~~r~~ 481 (707)
+ ....+..++..+ .|+..++|
T Consensus 169 ~~~~~l~~l~p~l~~~l-~D~~~~VR 193 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTL-NEPDPTVR 193 (242)
T ss_dssp CCHHHHHHHHHHHHHHH-TSSCHHHH
T ss_pred ccHHHHHHHHHHHHHHh-cCCChHHH
Confidence 1 123444455555 56665544
No 69
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=67.24 E-value=2.2e+02 Score=34.29 Aligned_cols=257 Identities=10% Similarity=0.082 Sum_probs=134.6
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHhccccccc-cc--chHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhh
Q 005234 246 TLNNFLSDSKAFWRVRIEAAYALANTASEET-DW--AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVA 322 (707)
Q Consensus 246 aL~rtL~D~ryFygVR~eAA~ALak~a~~~~-~~--~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa 322 (707)
.|...+.++ =-.+|.+|...|.+.-.... .. .....++...-+...+ .+..+|++-..+|+
T Consensus 10 ~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--------------~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 10 NLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--------------KNGEVQNLAVKCLG 73 (1230)
T ss_dssp HHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--------------SSHHHHHHHHHHHH
T ss_pred HHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--------------CCHHHHHHHHHHHH
Confidence 344445555 46899999998877543221 00 1122333322221111 23458998888888
Q ss_pred cccccCCCChH---HHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhccc--cccc------chHHHHHHHHHHHHHHh
Q 005234 323 MVRAADNKSPR---EAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELE--FGQQ------SILFLSSLLKRIDRLLQ 391 (707)
Q Consensus 323 ~vRd~~g~~P~---ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~--~~~~------~~~~l~~vl~eI~R~l~ 391 (707)
.+=. +..+. .+...|++.|.. ++..-+.+++.+|+.+. ++.. .......++..+...++
T Consensus 74 ~l~~--~~~~~~~~~i~~~Ll~~l~d--------~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 74 PLVS--KVKEYQVETIVDTLCTNMLS--------DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA 143 (1230)
T ss_dssp HHHT--TSCHHHHHHHHHHHHHHTTC--------SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHS
T ss_pred HHHH--hCCHHHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHc
Confidence 7642 22222 344455555432 12233566677777643 1111 11235566677777664
Q ss_pred cCcCCCCcccHhHHHHHHHHHHHHHHhcC-CCC-hHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhccCC--hhHHHHH
Q 005234 392 FDRLMPSYNGILTISCIRTLTQIALKLSG-FIS-LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNG--IDSALSL 467 (707)
Q Consensus 392 lD~~~PSY~~vVTvacL~~L~~L~~~~~g-~i~-~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~g--~~~al~~ 467 (707)
| +...-+..+|+.++.++...... ..| .+.++..+........ ..||.+|..||..++...+. ....+..
T Consensus 144 -~----~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~~~~~~~l~~ 217 (1230)
T 1u6g_C 144 -K----QEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEH 217 (1230)
T ss_dssp -C----CSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHH
T ss_pred -C----CCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 1 23346788899999888632222 222 2444444444333333 58999999999998754321 1345667
Q ss_pred HHHHHhcCcc--chhhhHHHHHhhhHHHhhCCCCCCCCCCcHHHHHHHHHhccccccccchhhhhHHHHHHHhhcCC
Q 005234 468 FIKSVEEEPS--LRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRA 542 (707)
Q Consensus 468 ~l~~l~~dp~--~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~d~~lR~~~~~~~~~L~g~~ 542 (707)
++..+..+.+ .|.. . ..++..++...+..-.. ..+.++..+....+. .|..+|..++..+..+...+
T Consensus 218 l~~~L~~~~~~~~r~~--a-~~~l~~l~~~~~~~~~~--~l~~l~~~ll~~l~d---~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 218 LLSELSKNDSMSTTRT--Y-IQCIAAISRQAGHRIGE--YLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHTCSSCSCTT--H-HHHHHHHHHHSSGGGTT--SCTTHHHHHHHHHSS---CCTTTHHHHHHHHHHHHHCT
T ss_pred HHHHhccCCchhHHHH--H-HHHHHHHHHHhHHHHHH--HHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHC
Confidence 7777755533 3332 1 12222222222111011 234566666665542 46789999888888777654
No 70
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=64.82 E-value=36 Score=35.10 Aligned_cols=160 Identities=11% Similarity=0.112 Sum_probs=91.2
Q ss_pred ChHHHHHHHHHHHhCCCCh--------HHHHHHHHH-HhcCCCccHHHHHHHHHHHhccccccc-------ccchHHHHH
Q 005234 222 DVVAQAQAIAALEALPHLS--------FNVVNTLNN-FLSDSKAFWRVRIEAAYALANTASEET-------DWAGLLHLV 285 (707)
Q Consensus 222 DVvAQlEAI~aL~~~p~~s--------~~~v~aL~r-tL~D~ryFygVR~eAA~ALak~a~~~~-------~~~Gl~~Li 285 (707)
+...+..|+..|...-... ...+..|.. .|..+ --.||..||.+|+.++.... ...|++.|+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~--~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG--AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 4466777777776432110 013456777 77665 67999999999999975322 234789999
Q ss_pred HHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcc-cccCCCCh-----HHHHHHHHHHHhhcCCCCCCCChhHHH
Q 005234 286 KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADNKSP-----REAVEFVLQLLKYNDNNGNPYSDVFWL 359 (707)
Q Consensus 286 k~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~v-Rd~~g~~P-----~ev~~fLldlLkyNDNS~N~ysDs~Yv 359 (707)
+.+++- | +--+++....||+.+ |+.. ..+ ..+...|+.+|+. .|.--.
T Consensus 131 ~LL~~~--------~---------~~~v~~~A~~ALsnl~~~~~-~~~~~~~~~ggi~~L~~lL~~--------~d~~v~ 184 (296)
T 1xqr_A 131 RLLDRD--------A---------CDTVRVKALFAISCLVREQE-AGLLQFLRLDGFSVLMRAMQQ--------QVQKLK 184 (296)
T ss_dssp HHHHHC--------S---------CHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHS--------SCHHHH
T ss_pred HHHccC--------C---------CHHHHHHHHHHHHHHHcCCc-HHHHHHHHCCCHHHHHHHHcC--------CCHHHH
Confidence 988751 1 113788888999987 4311 001 1245678888864 234445
Q ss_pred HHHHHHhhcccccccc-hH-HH-HHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHH
Q 005234 360 AALVQSVGELEFGQQS-IL-FL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 415 (707)
Q Consensus 360 A~lI~ALg~~~~~~~~-~~-~l-~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~ 415 (707)
..++.+|+++..+... .. +. ..++.-|..+|+ +-..-|...|+.+|..+.
T Consensus 185 ~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~------~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 185 VKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR------TEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT------SCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc------CCChhHHHHHHHHHHHHH
Confidence 6777777775432111 11 11 124455555554 223344445556666653
No 71
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=56.79 E-value=83 Score=32.32 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=36.2
Q ss_pred CcccHhHHHHHHHHHHHHHHhcCCCChHHHH---HhhhcccCCCCcHHHHHHHHHHhhhhhhccC
Q 005234 398 SYNGILTISCIRTLTQIALKLSGFISLDQVV---KLIKPFRDFNTIWQVRVEASRALLDLEFHCN 459 (707)
Q Consensus 398 SY~~vVTvacL~~L~~L~~~~~g~i~~d~~~---~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~~ 459 (707)
|=|.-...+||..+..+- ...|.-|.. .+ ..+..... +.-..||-+|+.|++.+..+.|
T Consensus 178 sKN~R~R~e~l~~l~~li-~~~G~~~~~-~l~~~~~ia~ll~-D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 178 SKNARQRSECLLVIEYYI-TNAGISPLK-SLSVEKTVAPFVG-DKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp CSCHHHHHHHHHHHHHHH-HHHCSGGGG-GGCHHHHHGGGGG-CSSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHH-HhcCCCccc-cccchHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhh
Confidence 555666788998888874 345654422 22 22222111 1236899999999999876643
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=55.12 E-value=1.8e+02 Score=30.96 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=100.4
Q ss_pred HhhCCChHHHH---HHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccC
Q 005234 217 LEKDGDVVAQA---QAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 293 (707)
Q Consensus 217 Lq~DrDVvAQl---EAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~ 293 (707)
|-+.+|..-+. -++..+.+.+....-+++.|.+=+.++..| ||.-|..+|+++..++. +..+....++-.-
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~--iR~lALRtL~~I~~~~m----~~~l~~~lk~~L~ 149 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDS--YRGPAVRALCQITDSTM----LQAIERYMKQAIV 149 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHH--HHHHHHHHHHHHCCTTT----HHHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHh--HHHHHHHHHhcCCCHHH----HHHHHHHHHHHcC
Confidence 55667776664 444445555544445788999999988643 89999999999998775 4566666655211
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccc
Q 005234 294 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQ 373 (707)
Q Consensus 294 ~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~ 373 (707)
+. +.+|+|+-+-+...+=. ..|.-+..|+-++-.-- ++ ++...++..+.+|..+.-
T Consensus 150 d~--------------~pyVRk~A~l~~~kL~~---~~pe~v~~~~~~l~~ll-~d----~n~~V~~~Al~lL~ei~~-- 205 (355)
T 3tjz_B 150 DK--------------VPSVSSSALVSSLHLLK---CSFDVVKRWVNEAQEAA-SS----DNIMVQYHALGLLYHVRK-- 205 (355)
T ss_dssp CS--------------SHHHHHHHHHHHHHHTT---TCHHHHHTTHHHHHHHT-TC----SSHHHHHHHHHHHHHHHT--
T ss_pred CC--------------CHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHh-cC----CCccHHHHHHHHHHHHHh--
Confidence 21 23476655555554422 25777777664443221 22 224455666666665432
Q ss_pred cchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCC--hHHHHHhhhcccCCCCcHHHHHHHHHHh
Q 005234 374 QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS--LDQVVKLIKPFRDFNTIWQVRVEASRAL 451 (707)
Q Consensus 374 ~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~--~d~~~~ll~~yt~~g~~~~vRiaA~~aL 451 (707)
.+...+.+++..+.+ ..+...|.. +-.|+.+++++. +.-| ...+.+++.+..+. ....|-.+|.+++
T Consensus 206 ~d~~a~~kLv~~l~~----~~l~~~~~q---~~llr~l~~~~~---~d~~~~~~~~~~~l~~~L~~-~~~aVvyEa~k~I 274 (355)
T 3tjz_B 206 NDRLAVSKMISKFTR----HGLKSPFAY---CMMIRVASRQLE---DEDGSRDSPLFDFIESCLRN-KHEMVVYEAASAI 274 (355)
T ss_dssp TCHHHHHHHHHHHHS----SCCSCHHHH---HHHHHHHTCC--------------------CCCCC-SSHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHhc----CCCcChHHH---HHHHHHHHHhcc---ccchhhHHHHHHHHHHHHcC-CChHHHHHHHHHH
Confidence 122223333333222 111112222 223343333321 1101 12344555555443 4467999999999
Q ss_pred hhhhh
Q 005234 452 LDLEF 456 (707)
Q Consensus 452 ~~l~~ 456 (707)
+.+..
T Consensus 275 ~~l~~ 279 (355)
T 3tjz_B 275 VNLPG 279 (355)
T ss_dssp TC---
T ss_pred HhccC
Confidence 99854
No 73
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=54.80 E-value=53 Score=35.08 Aligned_cols=205 Identities=13% Similarity=0.049 Sum_probs=103.2
Q ss_pred hCCChHHHHHHHHHHHhCCCC--hHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCC
Q 005234 219 KDGDVVAQAQAIAALEALPHL--SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDEN 296 (707)
Q Consensus 219 ~DrDVvAQlEAI~aL~~~p~~--s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~ 296 (707)
++++-.-|--||++|.....+ .......+.++|.|.. --||..|+.+..++-...++. ....+...++.-|+
T Consensus 114 ~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~--pyVRk~A~l~~~kL~~~~pe~--v~~~~~~l~~ll~d-- 187 (355)
T 3tjz_B 114 TGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKV--PSVSSSALVSSLHLLKCSFDV--VKRWVNEAQEAASS-- 187 (355)
T ss_dssp HSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHTTTCHHH--HHTTHHHHHHHTTC--
T ss_pred CCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHhcC--
Confidence 457778899999999986543 2345567788888884 459999999998876543321 11122222332233
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccch
Q 005234 297 IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSI 376 (707)
Q Consensus 297 s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~ 376 (707)
.+++|+-+-..+|..++..+ +.+..-|+..|.. ..-.+.|=...+|+.++...... ..
T Consensus 188 ------------~n~~V~~~Al~lL~ei~~~d----~~a~~kLv~~l~~-----~~l~~~~~q~~llr~l~~~~~~d-~~ 245 (355)
T 3tjz_B 188 ------------DNIMVQYHALGLLYHVRKND----RLAVSKMISKFTR-----HGLKSPFAYCMMIRVASRQLEDE-DG 245 (355)
T ss_dssp ------------SSHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHS-----SCCSCHHHHHHHHHHHTCC-------
T ss_pred ------------CCccHHHHHHHHHHHHHhhc----hHHHHHHHHHHhc-----CCCcChHHHHHHHHHHHHhcccc-ch
Confidence 23668777778888888655 3344444444432 12334666678889887654321 01
Q ss_pred HHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhh
Q 005234 377 LFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 456 (707)
Q Consensus 377 ~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~ 456 (707)
...+.+++.|.-+| -+-++.|-..|.+++..+.....+.+ ..+...+..|... ....+|.+|++.|..+..
T Consensus 246 ~~~~~~~~~l~~~L------~~~~~aVvyEa~k~I~~l~~~~~~~~--~~a~~~L~~fLss-~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 246 SRDSPLFDFIESCL------RNKHEMVVYEAASAIVNLPGCSAKEL--APAVSVLQLFCSS-PKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp -----------CCC------CCSSHHHHHHHHHHHTC-------------CCCTHHHHHHS-SSSSSHHHHHHCC-----
T ss_pred hhHHHHHHHHHHHH------cCCChHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHcC-CCchHHHHHHHHHHHHHH
Confidence 12233444444433 46778888888888877642001110 1111111111111 224689999999888765
Q ss_pred ccCC
Q 005234 457 HCNG 460 (707)
Q Consensus 457 ~~~g 460 (707)
..++
T Consensus 317 ~~P~ 320 (355)
T 3tjz_B 317 KHPS 320 (355)
T ss_dssp ----
T ss_pred HCcH
Confidence 4443
No 74
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=54.14 E-value=2.2e+02 Score=33.19 Aligned_cols=218 Identities=17% Similarity=0.055 Sum_probs=113.4
Q ss_pred hCCChHHHHHHHHHHHh----CC--------CChHHHHHHHHHHhcCC-------CccHHHHHHHHHHHhcccccc-ccc
Q 005234 219 KDGDVVAQAQAIAALEA----LP--------HLSFNVVNTLNNFLSDS-------KAFWRVRIEAAYALANTASEE-TDW 278 (707)
Q Consensus 219 ~DrDVvAQlEAI~aL~~----~p--------~~s~~~v~aL~rtL~D~-------ryFygVR~eAA~ALak~a~~~-~~~ 278 (707)
-|+.=..|.=|.-+|.. .+ .+..-++..|+=...|. ..=--||-.||++||.. ... ..+
T Consensus 184 Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~ 262 (800)
T 3oc3_A 184 LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPN 262 (800)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSC
T ss_pred cCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChhH
Confidence 56677778877777654 11 11122444444444443 11235777777777776 321 122
Q ss_pred chHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHH
Q 005234 279 AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFW 358 (707)
Q Consensus 279 ~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~Y 358 (707)
..+..|++ . . .-..+.|+.+---+|--+.|--.. ...|.+.++.-|...| .=-
T Consensus 263 ~IL~qLV~---~--------l-------~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~D--------DDV 315 (800)
T 3oc3_A 263 DIIEQLVG---F--------L-------DSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPD--------EDI 315 (800)
T ss_dssp CHHHHHTT---G--------G-------GCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSS--------HHH
T ss_pred HHHHHHHh---h--------c-------CCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcc--------cHH
Confidence 22333331 0 0 112366666555555444332221 5566677766666532 333
Q ss_pred HHHHHHHhhcccccccchHHHHHHHHHHHHHH-hcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCC
Q 005234 359 LAALVQSVGELEFGQQSILFLSSLLKRIDRLL-QFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDF 437 (707)
Q Consensus 359 vA~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l-~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~ 437 (707)
+|.++++|.-+..+ ..+..+++-++..| ++|.+.+|=+.|.. -|..|+.... .+...| .+..-+.+|.+.
T Consensus 316 RAVAAetLiPIA~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMd--LLAkL~s~p~-~a~~dp--~LVPRL~PFLRH 386 (800)
T 3oc3_A 316 KLLSAELLCHFPIT----DSLDLVLEKCWKNIESEELISVSKTSNLS--LLTKIYRENP-ELSIPP--ERLKDIFPCFTS 386 (800)
T ss_dssp HHHHHHHHTTSCCS----STHHHHHHHHHHHHHTCCSCCTTHHHHHH--HHHHHHHHCT-TCCCCS--GGGGGTGGGGTC
T ss_pred HHHHHHHhhhhcch----hhHHHHHHHHHHHhhhhcccchhhHHHHH--HHHHHHcCCc-ccccCh--HHHHHHHhhhcC
Confidence 45555666655421 12455555555544 46889998777765 2223333221 112222 334445565554
Q ss_pred CCcHHHHHHHHHHhhhhhhccCChhHHHHHHHHHH--hcCccch
Q 005234 438 NTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSV--EEEPSLR 479 (707)
Q Consensus 438 g~~~~vRiaA~~aL~~l~~~~~g~~~al~~~l~~l--~~dp~~r 479 (707)
....||.+++++|..+. ...++.+.++-+ |.+++.+
T Consensus 387 -tITSVR~AVL~TL~tfL-----~~~~LRLIFQNILLE~neeIl 424 (800)
T 3oc3_A 387 -PVPEVRTSILNMVKNLS-----EESIDFLVAEVVLIEEKDEIR 424 (800)
T ss_dssp -SSHHHHHHHHHHTTTCC-----CHHHHHHHHHHHHHCSCHHHH
T ss_pred -CcHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHhCCcHHHH
Confidence 56899999999999875 234666555554 5555554
No 75
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=52.54 E-value=43 Score=34.47 Aligned_cols=132 Identities=11% Similarity=0.098 Sum_probs=84.8
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhCCCChH---------HHHHHHHHHhcCCCccHHHHHHHHHHHhcccc--cc-----c
Q 005234 213 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTAS--EE-----T 276 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~p~~s~---------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~--~~-----~ 276 (707)
++.+|-...+..-|..|+.+|+.....+. .++..|.+.|..+. --.||..|+.+|+.+.. +. .
T Consensus 86 Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~ 164 (296)
T 1xqr_A 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFL 164 (296)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 44524467889999999999986432111 14567777787431 36899999999999752 11 1
Q ss_pred ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCC-----hHHHHHHHHHHHhhcCCCCC
Q 005234 277 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGN 351 (707)
Q Consensus 277 ~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~-----P~ev~~fLldlLkyNDNS~N 351 (707)
...|++.|++..++ .+..+|+....||+.+=..+... -..+...|+++|+..
T Consensus 165 ~~ggi~~L~~lL~~------------------~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~----- 221 (296)
T 1xqr_A 165 RLDGFSVLMRAMQQ------------------QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE----- 221 (296)
T ss_dssp HTTHHHHHHHHHHS------------------SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC-----
T ss_pred HCCCHHHHHHHHcC------------------CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC-----
Confidence 23478888888764 12348888888888764321101 112566788888753
Q ss_pred CCChhHHHHHHHHHhhcccc
Q 005234 352 PYSDVFWLAALVQSVGELEF 371 (707)
Q Consensus 352 ~ysDs~YvA~lI~ALg~~~~ 371 (707)
|.-.+..++.+|+++..
T Consensus 222 ---d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 222 ---HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp ---CSTHHHHHHHHHHHHHT
T ss_pred ---ChhHHHHHHHHHHHHHh
Confidence 45566788888887653
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=50.22 E-value=80 Score=32.60 Aligned_cols=165 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred HhhCCChHHHHHHHHHHHhCCCC---------hHHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc-ccchHHHHHH
Q 005234 217 LEKDGDVVAQAQAIAALEALPHL---------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-DWAGLLHLVK 286 (707)
Q Consensus 217 Lq~DrDVvAQlEAI~aL~~~p~~---------s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~-~~~Gl~~Lik 286 (707)
|-+|+|=.-+..|+.+|++.-.. -......+.+.+.++ .-+|-..|+++|...-...+ .-.++.-+++
T Consensus 41 LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~--dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~ 118 (265)
T 3b2a_A 41 LAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE--NEKVTIKALRALGYLVKDVPMGSKTFLKAAK 118 (265)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST--THHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q ss_pred HHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHH-HHHHHH
Q 005234 287 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWL-AALVQS 365 (707)
Q Consensus 287 ~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~Yv-A~lI~A 365 (707)
++.+ -+-++|+- ++.-++..++.++-.+ ..+.|..+|..|++ |++-++ ++.+.+
T Consensus 119 aL~d-------lik~~~~i-------l~~eaae~Lgklkv~~--~~~~V~~~l~sLl~---------Skd~~vK~agl~~ 173 (265)
T 3b2a_A 119 TLVS-------LLESPDDM-------MRIETIDVLSKLQPLE--DSKLVRTYINELVV---------SPDLYTKVAGFCL 173 (265)
T ss_dssp HHHH-------HTTSCCHH-------HHHHHHHHHHHCCBSC--CCHHHHHHHHHHHT---------CSSHHHHHHHHHH
T ss_pred HHHH-------HhcCCCch-------HHHHHHHHhCcCCccc--chHHHHHHHHHHHh---------CCChhHHHHHHHH
Q ss_pred hhcccccccchHHHHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHH
Q 005234 366 VGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQI 414 (707)
Q Consensus 366 Lg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L 414 (707)
|.++..-+.+...++.++.||..+++ |-.-.+.=-+|..+-++
T Consensus 174 L~eia~~S~D~~i~~~I~~eI~elL~------~eD~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 174 FLNMLNSSADSGHLTLILDEIPSLLQ------NDNEFIVELALDVLEKA 216 (265)
T ss_dssp HHHHGGGCSSCCCGGGTTTTHHHHHT------CSCHHHHHHHHHHHHHH
T ss_pred HHHhhcccCCHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHH
No 77
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=45.79 E-value=13 Score=43.10 Aligned_cols=190 Identities=18% Similarity=0.248 Sum_probs=103.3
Q ss_pred HhhCCChHHHHHHHHHHHhC----CCC-------hHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHH
Q 005234 217 LEKDGDVVAQAQAIAALEAL----PHL-------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLV 285 (707)
Q Consensus 217 Lq~DrDVvAQlEAI~aL~~~----p~~-------s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Li 285 (707)
|-...|...|+-|++.|... +.. ....+..|...|.|++ =-||.+|+..|..+.....+ +..++
T Consensus 130 lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneallLL~~Lt~~n~~---iQklV 204 (651)
T 3grl_A 130 LLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR--EVIRNDGVLLLQALTRSNGA---IQKIV 204 (651)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHHHHHHHHHTTCHH---HHHHH
T ss_pred HhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch--HHHHHHHHHHHHHHhcCCHH---HHHHH
Confidence 34678999999998777632 210 0024678889999884 88999999999998875432 11221
Q ss_pred HHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccC----CCChHHHHHHHHHHHhhcCCCCCCCChhHHHHH
Q 005234 286 KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD----NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAA 361 (707)
Q Consensus 286 k~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~----g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~ 361 (707)
- |. -|++.-++-++.+. |..-.++..+|.+||++|-.+.|.|.+. .
T Consensus 205 A-FE-------------------------naFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt----~ 254 (651)
T 3grl_A 205 A-FE-------------------------NAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG----S 254 (651)
T ss_dssp H-HT-------------------------THHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT----T
T ss_pred H-Hh-------------------------ccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc----C
Confidence 1 10 12233333333332 3455678899999999964333333333 3
Q ss_pred HHHHhhccc-ccccc----hHHHHH--HHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcc
Q 005234 362 LVQSVGELE-FGQQS----ILFLSS--LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPF 434 (707)
Q Consensus 362 lI~ALg~~~-~~~~~----~~~l~~--vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~y 434 (707)
.+..|..+. ...+. ..-... ..-+|.|.|= .|+=.---+..+-+++.+ +|. +..+++++.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv----~~~~~~~~t~~nQ~~~~~-----~g~--l~~Ll~ll~-- 321 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLV----SPNNPPGATSSCQKAMFQ-----CGL--LQQLCTILM-- 321 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHT----CTTSCHHHHHHHHHHHHH-----TTH--HHHHHHHHT--
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHh----CCCCCCCCCHHHHHHHHH-----CCC--HHHHHHHHc--
Confidence 444444321 11111 111222 1234555552 232111134445444443 221 233444432
Q ss_pred cCCCCcHHHHHHHHHHhhhhh
Q 005234 435 RDFNTIWQVRVEASRALLDLE 455 (707)
Q Consensus 435 t~~g~~~~vRiaA~~aL~~l~ 455 (707)
..+.+..+|..|+.++.++.
T Consensus 322 -~~~~p~~i~~~Al~tla~~i 341 (651)
T 3grl_A 322 -ATGVPADILTETINTVSEVI 341 (651)
T ss_dssp -CSSCCHHHHHHHHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHHHHHHH
Confidence 25678999999999999864
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=43.88 E-value=1.2e+02 Score=29.93 Aligned_cols=135 Identities=16% Similarity=0.095 Sum_probs=82.3
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHhC----C--CCh----HHHHHHHHHHhcCCCccHHHHHHHHHHHhccccccc--cc
Q 005234 211 QMWINQLEKDGDVVAQAQAIAALEAL----P--HLS----FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET--DW 278 (707)
Q Consensus 211 ~Mw~sQLq~DrDVvAQlEAI~aL~~~----p--~~s----~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~--~~ 278 (707)
.+....+..|.++..+..|+.+++.. + .-. ..+...|...+.|.+ -.||..|..+|..+...-+ .-
T Consensus 63 ~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk--~~V~~aa~~al~~i~~~~~~~~~ 140 (249)
T 2qk1_A 63 GIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKK--PSVIEAIRKALLTICKYYDPLAS 140 (249)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCC--HHHHHHHHHHHHHHHHHSCTTCT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHcccccc
Confidence 35566777899999999888887642 1 111 123455666677764 6798888888777654221 01
Q ss_pred ch-HHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCC--------hHHHHHHHHHHHhhcCCC
Q 005234 279 AG-LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS--------PREAVEFVLQLLKYNDNN 349 (707)
Q Consensus 279 ~G-l~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~--------P~ev~~fLldlLkyNDNS 349 (707)
.+ +..++...-.. .. . .++.++.+...+|+.+=+..+.. ++++...|..++. |
T Consensus 141 ~~~l~~ll~~l~~~-l~----~---------k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D-- 202 (249)
T 2qk1_A 141 SGRNEDMLKDILEH-MK----H---------KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--D-- 202 (249)
T ss_dssp TCTTHHHHHHHHHH-TT----C---------SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--C--
T ss_pred CCcHHHHHHHHHHH-Hc----C---------CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--C--
Confidence 12 33443322211 10 1 12458999999988887766542 2566667777773 2
Q ss_pred CCCCChhHHHHHHHHHhhcc
Q 005234 350 GNPYSDVFWLAALVQSVGEL 369 (707)
Q Consensus 350 ~N~ysDs~YvA~lI~ALg~~ 369 (707)
+|.--+.+.+++||.+
T Consensus 203 ----~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 203 ----TQPAIRTIGFESFAIL 218 (249)
T ss_dssp ----SSHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHH
Confidence 4677788888888875
No 79
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=42.20 E-value=3.2e+02 Score=29.12 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=84.6
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHhCCC---ChH------HHHHHHHHHhcCCCccHHHHHHHHHHHhccccc--cc----
Q 005234 212 MWINQLEKDGDVVAQAQAIAALEALPH---LSF------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASE--ET---- 276 (707)
Q Consensus 212 Mw~sQLq~DrDVvAQlEAI~aL~~~p~---~s~------~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~--~~---- 276 (707)
..+.-|. ..|...|.+|+.+|..... ... ..+..|.+.|..+ --.++.+|+.+|..++.. +.
T Consensus 6 ~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 6 KAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP--NQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3455564 4688999999999886421 111 1356788888765 678999999999999853 22
Q ss_pred -ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChH----HHHHHHHHHHhhc--C--
Q 005234 277 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR----EAVEFVLQLLKYN--D-- 347 (707)
Q Consensus 277 -~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~----ev~~fLldlLkyN--D-- 347 (707)
.-.|++.|++..++. + +.-+++....||+.+=..+. +-. .+...|+++|... .
T Consensus 83 ~~~G~i~~Lv~lL~~~------~-----------~~~~~~~a~~aL~nLa~~~~-~~~~i~~g~i~~Lv~ll~~~~s~~~ 144 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRT------G-----------NAEIQKQLTGLLWNLSSTDE-LKEELIADALPVLADRVIIPFSGWC 144 (457)
T ss_dssp HHTTCHHHHHHHHTTC------C-----------CHHHHHHHHHHHHHHHTSSS-THHHHHHHHHHHHHHHTTHHHHTCC
T ss_pred HHcCCHHHHHHHHhhC------C-----------CHHHHHHHHHHHHHHhcCHH-hHHHHHhccHHHHHHHHhccccccc
Confidence 234688999887520 1 12377777888877654321 222 4677888998431 0
Q ss_pred CCCCC----CChhHHHHHHHHHhhcccc
Q 005234 348 NNGNP----YSDVFWLAALVQSVGELEF 371 (707)
Q Consensus 348 NS~N~----ysDs~YvA~lI~ALg~~~~ 371 (707)
.+.+. -.|.-.+..++.+|+++..
T Consensus 145 ~~~~~~~~e~~~~~v~~~a~~aL~nLs~ 172 (457)
T 1xm9_A 145 DGNSNMSREVVDPEVFFNATGCLRNLSS 172 (457)
T ss_dssp ---------CCCHHHHHHHHHHHHHHTT
T ss_pred cCccchhcccccHHHHHHHHHHHHHHcc
Confidence 01110 1233444566677776553
No 80
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=39.56 E-value=1.2e+02 Score=35.90 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=79.8
Q ss_pred HHHHHhhCCChHHHHHHHHHHHhCCCChHH---------HHHHHHHHhcCCCccHHHHHHHHHHHhcccccccc------
Q 005234 213 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD------ 277 (707)
Q Consensus 213 w~sQLq~DrDVvAQlEAI~aL~~~p~~s~~---------~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~------ 277 (707)
++..|..+.+...+.+|+.+|....+.+.. .+..|...|.++ --.||..|+.+|+.++.....
T Consensus 585 Lv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--~~~Vq~~A~~~L~NLa~~~~~~~~~v~ 662 (810)
T 3now_A 585 LLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLYLTRAAAQCLCNLVMSEDVIKMFEG 662 (810)
T ss_dssp HHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC--CTTHHHHHHHHHHHHTTSHHHHHHHHS
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCChHHHHHHHh
Confidence 345566677888888999998876543211 345677777766 467999999999998763210
Q ss_pred -cchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChH------HHHHHHHHHHhhcCCCC
Q 005234 278 -WAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR------EAVEFVLQLLKYNDNNG 350 (707)
Q Consensus 278 -~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~------ev~~fLldlLkyNDNS~ 350 (707)
..+++.|++...+ .+.-+|++...||+.+=..+..... ...+.|.++|+..
T Consensus 663 ~~g~l~~Lv~LL~s------------------~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~---- 720 (810)
T 3now_A 663 NNDRVKFLALLCED------------------EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP---- 720 (810)
T ss_dssp SSSHHHHHHHGGGC------------------SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS----
T ss_pred ccCcHHHHHHHhcC------------------CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC----
Confidence 1134555554321 1234899999999988642110111 2335777787632
Q ss_pred CCCChhHHHHHHHHHhhcccc
Q 005234 351 NPYSDVFWLAALVQSVGELEF 371 (707)
Q Consensus 351 N~ysDs~YvA~lI~ALg~~~~ 371 (707)
|.--...++.+|+++..
T Consensus 721 ----d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 721 ----SPAVQHRGIVIILNMIN 737 (810)
T ss_dssp ----SHHHHHHHHHHHHHHHT
T ss_pred ----CHHHHHHHHHHHHHHHh
Confidence 23333667777776543
No 81
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=39.02 E-value=5.9 Score=40.18 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=22.3
Q ss_pred HHhhCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Q 005234 216 QLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALA 269 (707)
Q Consensus 216 QLq~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALa 269 (707)
+|-.|+|..-|.+|+..+ +. ..|...+.|+ .|.||..||.+|+
T Consensus 177 ~ll~D~d~~VR~aaa~~l---~~------~~L~~Ll~D~--d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 177 LMTQDPEPEVRRIVASRL---RG------DDLLELLHDP--DWTVRLAAVEHAS 219 (244)
T ss_dssp GSTTCSSHHHHHHHHHHC---CG------GGGGGGGGCS--SHHHHHHHHHHSC
T ss_pred HHHcCCCHHHHHHHHHhC---CH------HHHHHHHcCC--CHHHHHHHHHcCC
Confidence 444555555555555543 11 2244445555 6666666666653
No 82
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=31.58 E-value=2.4e+02 Score=34.18 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=51.2
Q ss_pred hCCChHHHHHHHHHHHhCCCChHHHHHHHHHHhcC-----CCccHHHHHHHHHHHhcccccccccchHHHHHHHHHh
Q 005234 219 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSD-----SKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 290 (707)
Q Consensus 219 ~DrDVvAQlEAI~aL~~~p~~s~~~v~aL~rtL~D-----~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~ 290 (707)
...|..-++-++++|+..+.+ .+...|.+.+.. ...+-+||.+|+.||-+++..++. .--..|++.|..
T Consensus 450 ~~~~~~~~~~~LkaLGN~g~p--~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-~v~~il~~i~~n 523 (1056)
T 1lsh_A 450 DRAKEEEIVLALKALGNAGQP--NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-KVQEIVLPIFLN 523 (1056)
T ss_dssp HTTCHHHHHHHHHHHHHHTCG--GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-HHHHHHHHHHHC
T ss_pred hcCChHHHHHHHHHhhccCCh--hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-HHHHHHHHHhcC
Confidence 456888889999999988865 356788888753 345889999999999999976531 113466777764
No 83
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=25.08 E-value=7.8e+02 Score=27.79 Aligned_cols=113 Identities=18% Similarity=0.147 Sum_probs=73.0
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHhCCCC-h--------HHHHHHHHHHhcCCCccHHHHHHHHHHHhcccc---ccc-
Q 005234 210 VQMWINQLEKDGDVVAQAQAIAALEALPHL-S--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS---EET- 276 (707)
Q Consensus 210 d~Mw~sQLq~DrDVvAQlEAI~aL~~~p~~-s--------~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~---~~~- 276 (707)
....+..| ...|...|.+|+.+|...... + .-.+..|.+.|..+ .-.|+..||.+|..++. +++
T Consensus 50 i~~LV~~L-~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~--~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 50 LPEVIAML-GFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP--KKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS--SHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC--CHHHHHHHHHHHHHHHccCCHHHH
Confidence 44556666 457899999999988754221 0 01357788888776 78999999999999986 222
Q ss_pred ----ccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCCh----HHHHHHHHHHH
Q 005234 277 ----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP----REAVEFVLQLL 343 (707)
Q Consensus 277 ----~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P----~ev~~fLldlL 343 (707)
...|++.|++..++- .+..+++....||..+-..+. .. .++...|+++|
T Consensus 127 ~~I~~~GaIp~LV~LL~s~-----------------~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL 183 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKA-----------------RDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEV 183 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHC-----------------CSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHcCC-----------------CCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHH
Confidence 234689999988751 012367776667666643221 11 12346677766
No 84
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=24.18 E-value=5.1e+02 Score=25.30 Aligned_cols=177 Identities=9% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCChHHHHH
Q 005234 258 WRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVE 337 (707)
Q Consensus 258 ygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~P~ev~~ 337 (707)
|..|.+|...|.+.-.....-.+-......|.. +-..+-+++ .|.+-.+-..+.+
T Consensus 23 WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~lkk~l---~DsN~~v~~~al~ 77 (278)
T 4ffb_C 23 WKARLEAYKELNQLFRNSVGDISRDDNIQIYWR----------------------DPTLFAQYI---TDSNVVAQEQAIV 77 (278)
T ss_dssp HHHHHHHHHHHHHHHHTC----------CCTTS----------------------CTHHHHHHT---TCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccchhHHHHHHH----------------------HHHHHHHHh---ccchHHHHHHHHH
Q ss_pred HHHHHHhhcCCCCCCCChhHHH-HHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcC-----------CCCcccHhHH
Q 005234 338 FVLQLLKYNDNNGNPYSDVFWL-AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRL-----------MPSYNGILTI 405 (707)
Q Consensus 338 fLldlLkyNDNS~N~ysDs~Yv-A~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~-----------~PSY~~vVTv 405 (707)
+|..+++.-......+...... ..++.+|..=.++.......+.+++.+..+...... ..+=+--+..
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~ 157 (278)
T 4ffb_C 78 ALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIA 157 (278)
T ss_dssp HHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHH
T ss_pred HHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHH
Q ss_pred HHHHHHHHHHHH-hcCCCChHHHHHhhhcccC---CCCcHHHHHHHHHHhhhhhhccC
Q 005234 406 SCIRTLTQIALK-LSGFISLDQVVKLIKPFRD---FNTIWQVRVEASRALLDLEFHCN 459 (707)
Q Consensus 406 acL~~L~~L~~~-~~g~i~~d~~~~ll~~yt~---~g~~~~vRiaA~~aL~~l~~~~~ 459 (707)
+|+..|.++-.. +...++.......+..... ...-..||-+|+++++.+....|
T Consensus 158 ~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 158 AAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
No 85
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=22.53 E-value=7e+02 Score=26.30 Aligned_cols=143 Identities=12% Similarity=0.095 Sum_probs=81.5
Q ss_pred cEEEEcCCCceEEEEeccCCHH-HHHHHHhhC---CChHHHHHHH---HHHHhCCCChHHHHHHHHHHhcCCCccHHHHH
Q 005234 190 SWIRADPEMEYLAEIHFNQPVQ-MWINQLEKD---GDVVAQAQAI---AALEALPHLSFNVVNTLNNFLSDSKAFWRVRI 262 (707)
Q Consensus 190 eWIRvDpd~ewL~~V~~~QPd~-Mw~sQLq~D---rDVvAQlEAI---~aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~ 262 (707)
+||.+.++..=.-+|..+...+ ..+.||..+ =++..|..-| -+|+..+..+....--|...|.++. =|-|=.
T Consensus 68 ~wi~~N~~~~GyYRVnYd~~~w~~L~~~L~~~~~~i~~~dRa~LidD~~~La~ag~~~~~~~l~l~~yL~~E~-~y~~w~ 146 (419)
T 3rjo_A 68 EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHET-EIMPVF 146 (419)
T ss_dssp SCEEEEESSSSCCEEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGGGCC-SHHHHH
T ss_pred ceEEEeCCccceEEEEeCHHHHHHHHHHHhhCCccCCHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcccc-hHHHHH
Confidence 4999999988777666543322 234566543 3566665433 3455444444344444677788876 677888
Q ss_pred HHHHHHhcccccc-----c-ccchHH-HHH----HHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCCCC
Q 005234 263 EAAYALANTASEE-----T-DWAGLL-HLV----KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS 331 (707)
Q Consensus 263 eAA~ALak~a~~~-----~-~~~Gl~-~Li----k~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g~~ 331 (707)
.|...|..+..-- + .+..+. ++. ..|.+.-+.+ + .++.+=.+|..+....+.+.+++ |
T Consensus 147 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw~~-------~--~~~~~~~lR~~~l~~ac~~g~~~--c 215 (419)
T 3rjo_A 147 QGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTD-------E--GSVSERMLRSQLLLLACVHNYQP--C 215 (419)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCSSC-------C--SCHHHHHHHHHHHHHHHHTTCHH--H
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHcCCCC-------C--chHHHHHHHHHHHHHHHhcCCHH--H
Confidence 8888887664311 1 112221 122 2333332221 1 34555668888888887775543 7
Q ss_pred hHHHHHHHHHHHh
Q 005234 332 PREAVEFVLQLLK 344 (707)
Q Consensus 332 P~ev~~fLldlLk 344 (707)
-.++.+..-+.+.
T Consensus 216 ~~~A~~~f~~~~~ 228 (419)
T 3rjo_A 216 VQRAEGYFRKWKE 228 (419)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 7777777666554
No 86
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=22.30 E-value=9.5e+02 Score=28.32 Aligned_cols=229 Identities=13% Similarity=0.119 Sum_probs=107.1
Q ss_pred HHHHhhCCChHHHHHHHHHHHhCCCC-------hHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccc-cccchHHHHH
Q 005234 214 INQLEKDGDVVAQAQAIAALEALPHL-------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-TDWAGLLHLV 285 (707)
Q Consensus 214 ~sQLq~DrDVvAQlEAI~aL~~~p~~-------s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~-~~~~Gl~~Li 285 (707)
...+...++-.-....++-|...-.. .......|...+.++ .||..||-+|+|+.... ..-.-...|.
T Consensus 261 ~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~~----~ir~lAavvL~KL~~~~~~~~~si~~La 336 (778)
T 3opb_A 261 KKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNVE----DVQIYSALVLVKTWSFTKLTCINLKQLS 336 (778)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTSG----GGHHHHHHHHHHHTGGGTCTTCCHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence 33343445555555555555432211 112456777777653 67999999999976422 2222356788
Q ss_pred HHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcccccCC--C---ChHHHHHHHHHHHhhcCCCCCCCChhHH-H
Q 005234 286 KFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN--K---SPREAVEFVLQLLKYNDNNGNPYSDVFW-L 359 (707)
Q Consensus 286 k~Fk~~~~~~~s~iPkpNdFsdf~~YfVqkAIp~ALa~vRd~~g--~---~P~ev~~fLldlLkyNDNS~N~ysDs~Y-v 359 (707)
+.|.+..+.+. .+. ++--+.+|+-+=...- . .-..+.+-|+++++. ...++..| +
T Consensus 337 ~~~~~~L~~~~------------~~~--~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~-----~~d~s~~Yga 397 (778)
T 3opb_A 337 EIFINAISRRI------------VPK--VEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS-----QKMTHCLYGL 397 (778)
T ss_dssp HHHHHHTTTCC------------HHH--HHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT-----TCCTTHHHHH
T ss_pred HHHHHHHhcCC------------ccH--HHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC-----CCCchHHHHH
Confidence 99988766432 111 5555677774421100 0 003456677788875 22456777 4
Q ss_pred HHHHHHhhcccccccchHHHHHHHHHHHHHHhcCcCCCCccc--H-hH-HHHHHHHHHHHHHhcCCCChHHHHHhhhccc
Q 005234 360 AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNG--I-LT-ISCIRTLTQIALKLSGFISLDQVVKLIKPFR 435 (707)
Q Consensus 360 A~lI~ALg~~~~~~~~~~~l~~vl~eI~R~l~lD~~~PSY~~--v-VT-vacL~~L~~L~~~~~g~i~~d~~~~ll~~yt 435 (707)
+.++.-|.+..-.... .++=+.++..|.+. -.|.-+. . +. -+-+..-.+-.+.-+|.+|. +..++..
T Consensus 398 l~IL~NLt~~~~~~~~---e~~~l~~Lk~~A~~--~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~--Lv~Ll~S-- 468 (778)
T 3opb_A 398 LVIMANLSTLPEEXXX---XXXXXXXXXXXXXX--XXPAADKVGAEKAAKEDILLFNEKYILRTELISF--LKREMHN-- 468 (778)
T ss_dssp HHHHHHTTCCCCCCCC---CCC--------------------CCTHHHHHHHHHHHHHHHTTTTTHHHH--HHHHGGG--
T ss_pred HHHHHHhcCCCcccch---hhhhhhhhhhhccc--cCcccCcccccccchHHHHHHHHHHHHHCcCHHH--HHHHHcC--
Confidence 6666666653211000 00112334444432 1233221 1 11 11111101111222444442 2222221
Q ss_pred CCCCcHHHHHHHHHHhhhhhhccCCh-----hHHHHHHHHHHhcCcc
Q 005234 436 DFNTIWQVRVEASRALLDLEFHCNGI-----DSALSLFIKSVEEEPS 477 (707)
Q Consensus 436 ~~g~~~~vRiaA~~aL~~l~~~~~g~-----~~al~~~l~~l~~dp~ 477 (707)
....+|..|.++|.-+....... ..++..++.++...+.
T Consensus 469 ---~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~ 512 (778)
T 3opb_A 469 ---LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQD 512 (778)
T ss_dssp ---SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC--
T ss_pred ---CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCC
Confidence 34679999999999986442211 2467778888866543
No 87
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=20.51 E-value=7.5e+02 Score=28.62 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhcccccc---cccchHHHHHHHHHh
Q 005234 242 NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE---TDWAGLLHLVKFYKS 290 (707)
Q Consensus 242 ~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~---~~~~Gl~~Lik~Fk~ 290 (707)
.+++.|..-|.+. .-..=|-.|+.+|-.++.+- ..-.|++.|+...++
T Consensus 21 etI~~L~~Rl~~~-tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~ 71 (651)
T 3grl_A 21 ETIQKLCDRVASS-TLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQT 71 (651)
T ss_dssp HHHHHHHHHHHHC-CSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHS
T ss_pred hHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhc
Confidence 5677788777765 47888999999999887542 233578888888876
Done!