BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005235
(707 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 14/149 (9%)
Query: 557 STKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMDLSSKPY 616
S +IR++DL + IK ++ G + ++A P L G+ GK+ F ++ K Y
Sbjct: 99 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158
Query: 617 RVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSS 676
L K I ++A+ AS + D +F D+ L L L GH
Sbjct: 159 S-LDTRGKFILSIAYSPDGKYLASGAIDGIINIF------DIATGKL---LHTLEGHAMP 208
Query: 677 NGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ F P L TA D I++Y
Sbjct: 209 ----IRSLTFSPDSQLLVTASDDGYIKIY 233
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 36/223 (16%)
Query: 502 WHRRGDYLSTVM------------PAGESRAIFMHQLSKKLSHRIPFKLHGLP--VSSV- 546
W+R G L T+ P G++ A + KL +R L L SSV
Sbjct: 371 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 430
Query: 547 ---FHPT-RSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG 602
F P ++I S K +++++ Q L++ L V +A P G + S +
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489
Query: 603 KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNP 662
+ ++ + + + L H + VAF AS SDD T ++ N+N
Sbjct: 490 TVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--------NRNG 539
Query: 663 LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ L+ L GH+SS V F P + +A +D ++L+
Sbjct: 540 QL--LQTLTGHSSS----VWGVAFSPDGQTIASASSDKTVKLW 576
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 36/223 (16%)
Query: 502 WHRRGDYLSTVM------------PAGESRAIFMHQLSKKLSHRIPFKLHGLP--VSSV- 546
W+R G L T+ P G++ A + KL +R L L SSV
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 184
Query: 547 ---FHP-TRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG 602
F P ++I S K +++++ Q L++ L V +A P G + S +
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDK 243
Query: 603 KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNP 662
+ ++ + + + L H + VAF AS SDD T ++ N+N
Sbjct: 244 TVKLWNRN--GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW--------NRNG 293
Query: 663 LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ L+ L GH+SS V F P + +A D ++L+
Sbjct: 294 QL--LQTLTGHSSS----VWGVAFSPDGQTIASASDDKTVKLW 330
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 18/161 (11%)
Query: 546 VFHP-TRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKL 604
F P ++I S K +++++ Q L++ L V +A P G + S + +
Sbjct: 23 AFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81
Query: 605 CWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLI 664
++ + + + L H + VAF AS SDD T ++ N+N +
Sbjct: 82 KLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--------NRNGQL 131
Query: 665 VPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
L+ L GH+SS V F P + +A D ++L+
Sbjct: 132 --LQTLTGHSSS----VWGVAFSPDGQTIASASDDKTVKLW 166
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 89/223 (39%), Gaps = 36/223 (16%)
Query: 502 WHRRGDYLSTVM------------PAGESRAIFMHQLSKKLSHRIPFKLHGLP--VSSV- 546
W+R G L T+ P G++ A + KL +R L L SSV
Sbjct: 248 WNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 307
Query: 547 ---FHP-TRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG 602
F P ++I S K +++++ Q L + L V +A P G + S +
Sbjct: 308 GVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSPDGQTIASASDDK 366
Query: 603 KLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNP 662
+ ++ + + + L H + VAF AS SDD T ++ N+N
Sbjct: 367 TVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--------NRNG 416
Query: 663 LIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ L+ L GH+SS V F P + +A D ++L+
Sbjct: 417 QL--LQTLTGHSSS----VWGVAFSPDDQTIASASDDKTVKLW 453
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 91/225 (40%), Gaps = 40/225 (17%)
Query: 502 WHRRGDYLSTVM------------PAGESRAIFMHQLSKKLSHRIPFKLHGLP--VSSV- 546
W+R G +L T+ P G++ A + KL +R L L SSV
Sbjct: 330 WNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 389
Query: 547 ---FHP-TRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG 602
F P ++I S K +++++ Q L++ L V +A P D I + +
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPD-DQTIASASDD 447
Query: 603 KLC--WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQ 660
K W + + + + L H + VAF AS SDD T ++ N+
Sbjct: 448 KTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--------NR 496
Query: 661 NPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
N + L+ L GH+SS V F P + +A D ++L+
Sbjct: 497 NGQL--LQTLTGHSSS----VRGVAFSPDGQTIASASDDKTVKLW 535
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 619 LKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSNG 678
L+ H + VAF AS SDD T ++ N+N + L+ L GH+SS
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLW--------NRNGQL--LQTLTGHSSS-- 59
Query: 679 RGVMDCKFHPRQPWLFTAGADSVIRLY 705
V F P + +A D ++L+
Sbjct: 60 --VWGVAFSPDGQTIASASDDKTVKLW 84
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 7/36 (19%)
Query: 386 VACYLEYK------GSTDGTVRIWEVESGRCLRVLE 415
+AC L+Y+ GS+D T+R+W++E G CLRVLE
Sbjct: 299 IAC-LQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 333
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 22/165 (13%)
Query: 543 VSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREG 602
S+ F T I+ KKN ++ + LE EV S+A P+G+ L SR+
Sbjct: 77 ASASFDATTCIW----KKNQDDFEC-----VTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 603 KLCWFDMDLSS--KPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQ 660
+ +++D + VL H +D+ +V +H S L AS S D T ++ +
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR-------EE 180
Query: 661 NPLIVPLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
V L GH S+ V F P L + D +R++
Sbjct: 181 EDDWVCCATLEGHEST----VWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 14/150 (9%)
Query: 560 KNIRVYDLLKQRLIKKL---ETGLKEVSSIAIHPAGDNLIVGSREGKLC-WFDMDLSSKP 615
+ IR++ I K E + V +A P G+ L S + C W +
Sbjct: 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97
Query: 616 YRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTS 675
L+ H ++ +VA+ S L A+CS D + +V+ ++++ + +L HT
Sbjct: 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW------EVDEEDEYECVSVLNSHT- 150
Query: 676 SNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ V +HP Q L +A D ++LY
Sbjct: 151 ---QDVKHVVWHPSQELLASASYDDTVKLY 177
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 25/220 (11%)
Query: 386 VACYLEY--KGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVL 443
V C+ +Y GS D ++++W+V +G+C+ + ++ V ++P LA+ D +
Sbjct: 82 VDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNY-FLAI---LDNV 137
Query: 444 ILNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVSWLQHDKLDGIRLRHFKMVSSVEWH 503
+ N G N E R D E ++ + I++ H+ LD + W
Sbjct: 138 MKNPGSINIYEIER--DSATHELTKVSEEPIHKIIT---HEGLDAATV--------AGWS 184
Query: 504 RRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSV-FHPTRSIFFVSTK-KN 561
+G Y ++ + I + +S + LH +S + F P + F S++ N
Sbjct: 185 TKGKY---IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241
Query: 562 IRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSRE 601
+ D+ +++KK ET +++ I P + +I+G +
Sbjct: 242 SFLVDVSTLQVLKKYETDCP-LNTAVITPLKEFIILGGGQ 280
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 548 HPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWF 607
H + + S I+++D I+ + VSS++I P GD+++ SR+ + +
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 608 DMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650
++ + + H + + V ++ L ASCS+D T V+
Sbjct: 220 EVQ-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 108/292 (36%), Gaps = 40/292 (13%)
Query: 370 TLKPKLPSRKDLKPYPVACYLEYKGSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLP 429
TLK S +D+ + + L S D T+++W+ + C+R + G + + +P
Sbjct: 145 TLKGHTDSVQDI-SFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMP 202
Query: 430 ELPVLAVSVGQDVLI----------LNTGLGNEEEQRRVKDLLHVETPTAPDDNMASIVS 479
+ VS +D I + T G+ E R V+ T A N ++
Sbjct: 203 NGDHI-VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP-NQDGTLIASCSNDQTVRV 260
Query: 480 WLQHDKLDGIRLR-HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKL 538
W+ K LR H +V + W Y S G +KK PF L
Sbjct: 261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE--------TKKSGKPGPFLL 312
Query: 539 HGLPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVG 598
G S K I+++D+ + L V + H G ++
Sbjct: 313 SG----------------SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 356
Query: 599 SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650
+ + L +D + + + L H +T++ FH++ P + S D T V+
Sbjct: 357 ADDKTLRVWDYK-NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 618 VLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTSSN 677
L H +T V FH + + S S+D T V+ D + L+GHT S
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW-DYETGDFERT--------LKGHTDS- 152
Query: 678 GRGVMDCKFHPRQPWLFTAGADSVIRLY 705
V D F L + AD I+L+
Sbjct: 153 ---VQDISFDHSGKLLASCSADMTIKLW 177
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNPLPELPVLAVSVGQDVLILNTGLGNEE 453
GS D TVRIW++ +G+C L I + + VA +P + A S+ + V + ++ G
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 454 EQRRVKDLLHVETPTAPDDNMASIV 478
E+ ++ E+ T D++ S+V
Sbjct: 243 ERLDSEN----ESGTGHKDSVYSVV 263
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 491 LRHFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSK----------KLSHRIPFKLHG 540
L H +V V++ G+YL+T G ++ ++++S +++ P L+
Sbjct: 61 LDHTSVVCCVKFSNDGEYLAT----GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116
Query: 541 -------LPVSSVFHPTRSIFFVSTKKN--IRVYDLLKQRLIKKLETGLKEVSSIAIHPA 591
L + SV F + ++ IR++D+ ++++ L+ +++ S+ P+
Sbjct: 117 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 176
Query: 592 GDNLIVGSREGKLCWFDM 609
GD L+ GS + + +D+
Sbjct: 177 GDKLVSGSGDRTVRIWDL 194
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 46 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 101
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ K + L H ++ V F+R L S S D ++ + L
Sbjct: 162 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 208
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTL 169
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLK 128
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKTL 211
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 44 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 99
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ K + L H ++ V F+R L S S D ++ + L
Sbjct: 160 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 206
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTL 167
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLK 126
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKTL 209
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 28 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 83
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ K + L H ++ V F+R L S S D ++ + L
Sbjct: 144 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 190
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL 151
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLK 110
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTL 193
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 18 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 73
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ K + L H ++ V F+R L S S D ++ + L
Sbjct: 134 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 180
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTL 141
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLK 100
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKTL 183
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 22 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 77
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ K + L H ++ V F+R L S S D ++ + L
Sbjct: 138 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 184
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTL 145
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLK 104
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTL 187
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 22 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 77
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ K + L H ++ V F+R L S S D ++ + L
Sbjct: 138 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 184
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTL 145
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLK 104
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTL 187
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 28 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 83
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ K + L H ++ V F+R L S S D ++ + L
Sbjct: 144 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 190
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL 151
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLK 110
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTL 193
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 546 VFHPTRSIFFVSTKKNIRVYDLLKQ----RLIKKLETGLKEVSSIAIHPAGDNLI-VGSR 600
F T I V++ ++++D +Q I L + + HP +++ G +
Sbjct: 198 TFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQ 257
Query: 601 EGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYP--LFASCSDDCTAY 648
+G L +D+ + P +LK H ++ V FH S P LF +CS+D + +
Sbjct: 258 DGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLF-TCSEDGSLW 306
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 39 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 94
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ K + L H ++ V F+R L S S D ++ + L
Sbjct: 155 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 201
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTL 162
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLK 121
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 395 STDGTVRIWEVESGRCLRVL 414
S DG RIW+ SG+CL+ L
Sbjct: 185 SYDGLCRIWDTASGQCLKTL 204
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 23 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 78
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ K + L H ++ V F+R L S S D ++ + L
Sbjct: 139 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 185
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTL 146
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLK 105
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKTL 188
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 29/220 (13%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 28 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 83
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF---HGMVYSDL--NQNPLIV 665
+ K + L H ++ V F+R L S S D ++ G L + NP
Sbjct: 144 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--- 199
Query: 666 PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
P+ + KF P ++ A D+ ++L+
Sbjct: 200 PVSFV--------------KFSPNGKYILAATLDNTLKLW 225
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL 151
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLK 110
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTL 193
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 27 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 82
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ K + L H ++ V F+R L S S D ++ + L
Sbjct: 143 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 189
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 190 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTL 150
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLK 109
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKTL 192
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 29/220 (13%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 25 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 80
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF---HGMVYSDL--NQNPLIV 665
+ K + L H ++ V F+R L S S D ++ G L + NP
Sbjct: 141 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--- 196
Query: 666 PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
P+ + KF P ++ A D+ ++L+
Sbjct: 197 PVSFV--------------KFSPNGKYILAATLDNTLKLW 222
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 395 STDGTVRIWEVESGRCLRVL 414
S DG RIW+ SG+CL+ L
Sbjct: 171 SYDGLCRIWDTASGQCLKTL 190
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 21 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 76
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ K + L H ++ V F+R L S S D ++ + L
Sbjct: 137 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 183
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTL 144
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLK 103
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKTL 186
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 29/220 (13%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 25 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 80
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF---HGMVYSDL--NQNPLIV 665
+ K + L H ++ V F+R L S S D ++ G L + NP
Sbjct: 141 -TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--- 196
Query: 666 PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
P+ + KF P ++ A D+ ++L+
Sbjct: 197 PVSFV--------------KFSPNGKYILAATLDNTLKLW 222
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 395 STDGTVRIWEVESGRCLRVL 414
S DG RIW+ SG+CL+ L
Sbjct: 171 SYDGLCRIWDTASGQCLKTL 190
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 394 GSTDGTVRIWEVESGRCLRVL 414
GS D T+R+W++E+G+CL VL
Sbjct: 215 GSRDATLRVWDIETGQCLHVL 235
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 19/22 (86%)
Query: 394 GSTDGTVRIWEVESGRCLRVLE 415
G+ D TV+IW++++G+CL+ L+
Sbjct: 335 GNADSTVKIWDIKTGQCLQTLQ 356
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 394 GSTDGTVRIWEVESGRCLRVL 414
GS D ++R+W+VE+G C+ L
Sbjct: 295 GSLDTSIRVWDVETGNCIHTL 315
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 359 VRKKRVNIDPETLKPKLPSRKDLKPYP--VACYLEY------KGSTDGTVRIWEVESGRC 410
+R+ R ID + +L S K LK + V L++ GS D T+++W +G+C
Sbjct: 94 IRQHR--IDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC 151
Query: 411 LRVL 414
LR L
Sbjct: 152 LRTL 155
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 394 GSTDGTVRIWEVESGRCLRVL 414
GSTD T+++W E+G C+ L
Sbjct: 175 GSTDRTLKVWNAETGECIHTL 195
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 15/162 (9%)
Query: 547 FHPTRSIFFVSTKKN-IRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLC 605
FHPT + + +++ Q ++ ++ V + + +IVGS + ++
Sbjct: 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV 665
F+ + K + HP I ++A H + P S SDD T +++ L Q
Sbjct: 81 VFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT---- 135
Query: 666 PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA-DSVIRLYC 706
GH VM F+P+ P F +G D ++++
Sbjct: 136 ----FEGHE----HFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 545 SVFHPTRSIFFVSTK-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG 592
+VFHPT I ++ +++++ ++ K L GL+ IA HP G
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 15/161 (9%)
Query: 547 FHPTRSIFFVSTKKN-IRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLC 605
FHPT + + +++ Q ++ ++ V + + +IVGS + ++
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV 665
F+ + K + HP I ++A H + P S SDD T +++ L Q
Sbjct: 81 VFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT---- 135
Query: 666 PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA-DSVIRLY 705
GH VM F+P+ P F +G D ++++
Sbjct: 136 ----FEGHE----HFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 545 SVFHPTRSIFFVSTK-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG 592
+VFHPT I ++ +++++ ++ K L GL+ IA HP G
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 15/161 (9%)
Query: 547 FHPTRSIFFVSTKKN-IRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLC 605
FHPT + + +++ Q ++ ++ V + + +IVGS + ++
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV 665
F+ + K + HP I ++A H + P S SDD T +++ L Q
Sbjct: 81 VFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT---- 135
Query: 666 PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA-DSVIRLY 705
GH VM F+P+ P F +G D ++++
Sbjct: 136 ----FEGHE----HFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 545 SVFHPTRSIFFVSTK-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG 592
+VFHPT I ++ +++++ ++ K L GL+ IA HP G
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 541 LPVSSVFHPTRSIFFVSTKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPA--GDNLIVG 598
L S + I S ++D+ +L++ +V + + P+ G+ + G
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 599 SREGKLCWFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVF 650
+ K +DM S + + + H D+ +V ++ S FAS SDD T ++
Sbjct: 217 GCDKKAMVWDMR-SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 555 FVS--TKKNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDM 609
FVS K V+D+ + ++ ET +V+S+ +P+GD GS + +D+
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 15/161 (9%)
Query: 547 FHPTRSIFFVSTKKN-IRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLC 605
FHPT + + +++ Q ++ ++ V + + +IVGS + ++
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 606 WFDMDLSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIV 665
F+ + K + HP I ++A H + P S SDD T +++ L Q
Sbjct: 81 VFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT---- 135
Query: 666 PLEILRGHTSSNGRGVMDCKFHPRQPWLFTAGA-DSVIRLY 705
GH VM F+P+ P F +G D ++++
Sbjct: 136 ----FEGHE----HFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 545 SVFHPTRSIFFVSTK-KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAG 592
+VFHPT I ++ +++++ ++ K L GL+ IA HP G
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 12/166 (7%)
Query: 512 VMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFH-PTRSIFFVSTKKNIRV--YDLL 568
+ G+ ++ + LS+K + + H V+ V P + F+S ++ R+ +D
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLK-SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Query: 569 KQRLIKKLETGLKEV--SSIAIHPAGDN-LIVGSREGKLCWFDMDLSSKPYRVLKCHPKD 625
K + +++ + +S+ HP D+ G G + ++ + + H ++
Sbjct: 213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK-NPDSAQTSAVHSQN 271
Query: 626 ITNVAF-HRSYPLFASCSDDCTAYVFHG---MVYSDLNQNPLIVPL 667
IT +A+ + S P AS S+DCT V V+ DL+ + +
Sbjct: 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGV 317
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G+CL+ L
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTL 148
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 395 STDGTVRIWEVESGRCLRVL 414
S DG RIW+ SG+CL+ L
Sbjct: 171 SYDGLCRIWDTASGQCLKTL 190
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 85/215 (39%), Gaps = 19/215 (8%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 25 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 80
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEIL 670
+ + L H ++ V F+R L S S D ++ + L
Sbjct: 141 -TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------------TASGQCL 187
Query: 671 RGHTSSNGRGVMDCKFHPRQPWLFTAGADSVIRLY 705
+ + V KF P ++ A D+ ++L+
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G CL+ L
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTL 148
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTL 190
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 394 GSTDGTVRIWEVESGRCLRVLE 415
GSTD TVR+W+++ G C V E
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFE 200
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 394 GSTDGTVRIWEVESGRCLRVLE 415
GSTD TVR+W+++ G C V E
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFE 200
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L GS D +VRIW+V++G CL+ L
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTL 148
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 493 HFKMVSSVEWHRRGDYLSTVMPAGESRAIFMHQLSKKLSHRIPFKLHGLPVSSVFHPTRS 552
H K VSSV++ G++L++ + + K I H L +S V + S
Sbjct: 25 HTKAVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDS 80
Query: 553 IFFVSTK--KNIRVYDLLKQRLIKKLETGLKEVSSIAIHPAGDNLIVGSREGKLCWFDMD 610
VS K ++++D+ + +K L+ V +P + ++ GS + + +D+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 611 LSSKPYRVLKCHPKDITNVAFHRSYPLFASCSDD 644
+ + L H ++ V F+R L S S D
Sbjct: 141 -TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVLE 415
L S D T++IW+V SG+CL+ L+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLK 107
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 390 LEYKGSTDGTVRIWEVESGRCLRVL 414
L S DG RIW+ SG+CL+ L
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTL 190
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNP 427
G++D +RIW V SG CL ++ + + W+P
Sbjct: 308 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 341
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNP 427
G++D +RIW V SG CL ++ + + W+P
Sbjct: 297 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 330
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 394 GSTDGTVRIWEVESGRCLRVLEIGEAIQYVAWNP 427
G++D +RIW V SG CL ++ + + W+P
Sbjct: 217 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,686,691
Number of Sequences: 62578
Number of extensions: 953590
Number of successful extensions: 2645
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2431
Number of HSP's gapped (non-prelim): 216
length of query: 707
length of database: 14,973,337
effective HSP length: 106
effective length of query: 601
effective length of database: 8,340,069
effective search space: 5012381469
effective search space used: 5012381469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)